Query 004233
Match_columns 766
No_of_seqs 444 out of 3228
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 18:32:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 100.0 9.5E-38 3.2E-42 358.2 15.0 157 241-460 65-224 (506)
2 3hsi_A Phosphatidylserine synt 100.0 5.1E-37 1.7E-41 345.3 19.9 354 208-751 23-401 (458)
3 1xdp_A Polyphosphate kinase; P 99.9 3.1E-25 1.1E-29 258.3 18.6 140 241-459 346-494 (687)
4 2o8r_A Polyphosphate kinase; s 99.9 3.5E-23 1.2E-27 239.1 24.3 274 241-753 351-639 (705)
5 4ggj_A Mitochondrial cardiolip 99.8 2.8E-19 9.5E-24 179.1 11.3 133 241-460 45-178 (196)
6 2fk9_A Protein kinase C, ETA t 99.8 1.1E-18 3.7E-23 168.0 12.4 130 10-180 22-156 (157)
7 2dmh_A Myoferlin; beta-sandwic 99.8 1E-17 3.6E-22 158.1 15.4 125 15-185 5-137 (140)
8 1gmi_A Protein kinase C, epsil 99.7 9E-18 3.1E-22 158.0 13.9 130 14-183 3-135 (136)
9 3b7y_A E3 ubiquitin-protein li 99.7 1.2E-17 4.2E-22 160.2 15.0 123 16-181 19-153 (153)
10 1wfj_A Putative elicitor-respo 99.7 8.7E-18 3E-22 157.8 12.2 124 15-185 8-134 (136)
11 3kwu_A MUNC13-1; calcium bindi 99.7 6.5E-17 2.2E-21 154.2 18.2 121 14-180 14-146 (148)
12 2ep6_A MCTP2 protein; beta san 99.7 3.1E-17 1.1E-21 153.6 14.0 121 15-181 11-132 (133)
13 3m7f_B E3 ubiquitin-protein li 99.7 5.2E-17 1.8E-21 159.7 15.5 124 16-182 7-142 (176)
14 1byr_A Protein (endonuclease); 99.7 3.8E-17 1.3E-21 156.9 13.9 135 241-460 13-149 (155)
15 1rlw_A Phospholipase A2, CALB 99.7 1E-16 3.4E-21 148.4 12.8 117 16-180 2-124 (126)
16 4gel_A Mitochondrial cardiolip 99.7 3.1E-17 1.1E-21 167.3 8.4 150 241-460 57-210 (220)
17 3pyc_A E3 ubiquitin-protein li 99.7 6.3E-16 2.1E-20 144.4 15.4 120 17-179 5-131 (132)
18 2nq3_A Itchy homolog E3 ubiqui 99.6 6.9E-16 2.4E-20 151.3 13.1 126 13-183 32-163 (173)
19 2b3r_A Phosphatidylinositol-4- 99.6 3.3E-15 1.1E-19 140.1 13.9 108 10-160 13-129 (134)
20 3f04_A Synaptotagmin-1; C2A, c 99.6 2.5E-15 8.5E-20 142.3 11.3 104 15-160 32-141 (143)
21 1rsy_A Synaptotagmin I; calciu 99.6 3.3E-15 1.1E-19 143.2 12.2 104 15-160 40-149 (152)
22 3fdw_A Synaptotagmin-like prot 99.6 2.8E-15 9.4E-20 143.0 11.5 106 16-163 22-136 (148)
23 2q3x_A Regulating synaptic mem 99.6 3.7E-15 1.3E-19 145.8 12.6 108 13-162 26-140 (171)
24 1a25_A CALB, protein kinase C 99.6 4.1E-15 1.4E-19 141.9 12.4 107 12-161 26-139 (149)
25 1rh8_A Piccolo protein; beta-s 99.6 1.4E-15 4.8E-20 143.8 9.0 109 11-161 12-138 (142)
26 2r83_A Synaptotagmin-1; C2A-C2 99.6 1.1E-14 3.8E-19 154.0 17.0 126 15-182 17-148 (284)
27 3rdl_A Protein kinase C alpha 99.6 5.4E-15 1.8E-19 138.7 12.3 108 12-162 11-125 (137)
28 2z0u_A WW domain-containing pr 99.6 1.9E-15 6.6E-20 145.4 8.3 104 15-160 41-154 (155)
29 2d8k_A Synaptotagmin VII; exoc 99.6 8.8E-15 3E-19 138.2 12.8 106 15-162 24-136 (141)
30 4ggj_A Mitochondrial cardiolip 99.6 1.2E-15 4.2E-20 152.6 6.6 119 560-753 45-163 (196)
31 2bwq_A Regulating synaptic mem 99.6 1.1E-14 3.7E-19 135.2 11.7 101 16-159 17-128 (129)
32 1byr_A Protein (endonuclease); 99.6 5E-15 1.7E-19 142.1 9.0 121 560-753 13-134 (155)
33 1wfm_A Synaptotagmin XIII; C2 99.6 1.7E-14 6E-19 135.8 12.3 101 16-161 25-132 (138)
34 1v27_A Regulating synaptic mem 99.6 1.3E-14 4.4E-19 136.8 11.0 104 16-162 20-134 (141)
35 2chd_A Rabphilin-3A, exophilin 99.5 1.9E-14 6.6E-19 136.0 12.0 103 15-159 27-138 (142)
36 3fbk_A RGS3, RGP3, regulator o 99.5 3.3E-14 1.1E-18 136.3 12.6 106 14-162 24-138 (153)
37 3n5a_A Synaptotagmin-7; calciu 99.5 3E-14 1E-18 133.7 11.7 92 15-148 14-113 (138)
38 1ugk_A Synaptotagmin IV, KIAA1 99.5 4.5E-14 1.5E-18 132.8 12.4 105 15-161 20-133 (138)
39 2enp_A B/K protein; C2 type 1, 99.5 3.8E-14 1.3E-18 134.8 11.4 109 16-160 25-140 (147)
40 1tjx_A Similar to synaptotagmi 99.5 4.9E-14 1.7E-18 136.0 12.3 104 15-160 23-146 (159)
41 2dmg_A KIAA1228 protein; beta- 99.5 3.5E-14 1.2E-18 134.2 10.8 104 16-162 23-136 (142)
42 1w15_A Synaptotagmin IV; metal 99.5 1E-13 3.4E-18 132.8 13.6 90 15-146 28-125 (153)
43 2cm5_A Rabphilin-3A; protein t 99.5 7.6E-14 2.6E-18 135.6 13.0 104 15-160 35-158 (166)
44 3l9b_A Otoferlin; C2-domain, b 99.5 1.7E-13 5.7E-18 127.1 12.1 101 80-183 37-142 (144)
45 1dqv_A Synaptotagmin III; beta 99.5 2E-13 6.8E-18 145.4 14.1 124 16-182 19-150 (296)
46 2cjt_A UNC-13 homolog A, MUNC1 99.5 2.3E-13 8E-18 127.0 11.3 96 80-179 23-130 (131)
47 3nsj_A Perforin-1; pore formin 99.4 2.4E-12 8.1E-17 146.9 15.6 106 16-178 393-501 (540)
48 3jzy_A Intersectin 2; C2 domai 99.4 1.7E-12 5.7E-17 148.7 14.2 116 16-180 386-507 (510)
49 2cjs_A UNC-13 homolog A, MUNC1 99.4 2.5E-12 8.7E-17 125.0 12.6 66 80-149 32-99 (167)
50 1djx_A PLC-D1, phosphoinositid 99.4 3E-12 1E-16 149.2 13.9 120 15-180 495-623 (624)
51 4gel_A Mitochondrial cardiolip 99.3 1.3E-12 4.4E-17 132.9 8.4 139 560-753 57-195 (220)
52 3bxj_A RAS GTPase-activating p 99.3 4E-13 1.4E-17 152.5 1.8 128 13-187 7-163 (483)
53 2r83_A Synaptotagmin-1; C2A-C2 99.3 1E-11 3.5E-16 131.1 12.5 103 16-160 149-271 (284)
54 1cjy_A CPLA2, protein (cytosol 99.3 6.7E-12 2.3E-16 147.5 11.5 102 16-159 17-124 (749)
55 3hsi_A Phosphatidylserine synt 99.2 2.8E-11 9.7E-16 135.9 11.8 148 241-460 257-420 (458)
56 1dqv_A Synaptotagmin III; beta 99.2 5.3E-12 1.8E-16 134.4 5.1 91 16-148 151-249 (296)
57 1xdp_A Polyphosphate kinase; P 99.2 3.5E-11 1.2E-15 140.4 9.9 119 564-753 350-480 (687)
58 1v0w_A Phospholipase D; hydrol 99.0 5.8E-10 2E-14 127.5 10.5 150 242-460 314-492 (506)
59 3pfq_A PKC-B, PKC-beta, protei 99.0 1.1E-09 3.9E-14 129.5 12.2 107 13-162 168-281 (674)
60 3ohm_B 1-phosphatidylinositol- 99.0 1.8E-09 6.3E-14 128.8 12.0 96 80-182 742-846 (885)
61 3qr0_A Phospholipase C-beta (P 98.9 3.1E-09 1E-13 126.3 13.5 115 15-182 648-772 (816)
62 2zkm_X 1-phosphatidylinositol- 98.9 3.1E-09 1.1E-13 126.8 12.9 113 15-180 676-798 (799)
63 1yrk_A NPKC-delta, protein kin 98.8 6E-08 2E-12 87.3 13.8 89 80-180 27-124 (126)
64 2enj_A NPKC-theta, protein kin 98.8 3.9E-08 1.3E-12 89.7 11.0 90 80-181 32-130 (138)
65 2o8r_A Polyphosphate kinase; s 98.4 5.1E-07 1.7E-11 104.8 10.3 120 563-753 354-487 (705)
66 3qph_A TRMB, A global transcri 97.1 0.00022 7.4E-09 76.9 3.5 110 559-752 117-230 (342)
67 3qph_A TRMB, A global transcri 96.4 0.0034 1.2E-07 67.5 6.2 48 241-305 118-165 (342)
68 2f5t_X Archaeal transcriptiona 95.4 0.052 1.8E-06 54.9 9.5 49 241-306 9-57 (233)
69 2c1l_A Restriction endonucleas 93.8 0.11 3.7E-06 51.8 7.1 40 710-751 103-145 (358)
70 3l4c_A Dedicator of cytokinesi 87.1 4.8 0.00016 39.8 11.5 40 92-131 77-119 (220)
71 2c1l_A Restriction endonucleas 84.9 5 0.00017 40.1 10.2 79 284-395 50-128 (358)
72 2yrb_A Protein fantom; beta sa 73.8 19 0.00064 33.6 9.8 99 80-180 40-149 (156)
73 2f5t_X Archaeal transcriptiona 71.4 8 0.00027 38.7 7.3 51 559-629 8-58 (233)
74 2wxf_A Phosphatidylinositol-4, 66.2 22 0.00077 42.8 10.9 68 80-147 235-324 (940)
75 1q32_A TDP1P;, tyrosyl-DNA pho 57.2 3.8 0.00013 46.2 1.9 41 707-747 427-487 (544)
76 3hhm_A Phosphatidylinositol-4, 53.3 45 0.0016 40.6 10.4 67 80-147 375-455 (1091)
77 1e7u_A Phosphatidylinositol 3- 47.4 61 0.0021 39.1 10.2 68 80-147 238-330 (961)
78 2y3a_A Phosphatidylinositol-4, 35.4 32 0.0011 42.0 5.3 50 80-129 371-429 (1092)
79 1jy1_A TDP1, tyrosyl-DNA phosp 33.2 15 0.00052 40.6 1.9 33 363-400 115-147 (464)
80 2l82_A Designed protein OR32; 26.6 77 0.0026 27.2 4.6 45 285-343 90-134 (162)
81 3sq7_A Tyrosyl-DNA phosphodies 23.9 30 0.001 38.2 2.0 45 708-752 351-415 (470)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=9.5e-38 Score=358.19 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=112.3
Q ss_pred cchHHHHHHHHHhccceEEEEEeec-ccceeEeecCCCCCCCCCcCcHHHHHHHHHhcC--CEEEEEEecCCCccCcccc
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSV-FHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGV 317 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~-~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rG--V~VrILv~D~~gs~~~~~~ 317 (766)
+++|++|+++|++|+++|+|++|+| .++ ..| ..|.++|++||+|| |+||||+ |.+|+.....
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d-----------~~g--~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~~- 129 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNG-----------AFQ--DAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNV- 129 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCH-----------HHH--HHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCC-
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCC-----------hHH--HHHHHHHHHHHhCCCCcEEEEEE-eCcccccccc-
Confidence 7889999999999999999999994 664 122 79999999999999 9999996 8866533100
Q ss_pred ccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcc
Q 004233 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (766)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r 397 (766)
.+..+.+.|+++|+++... .+.. ...+.. ....+.|||+|++|||++ +||+||+|+++++
T Consensus 130 --------~~~~~~~~L~~~g~~~~~~--~~~~-~~~~~~-~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~ 189 (506)
T 1v0w_A 130 --------IPSKYRDELTAKLGKAAEN--ITLN-VASMTT-SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDD 189 (506)
T ss_dssp --------HHHHHHHHHHHHHGGGGGG--EEEE-EEEECS-BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHH
T ss_pred --------CCHHHHHHHHhcccceeec--Cccc-cccccc-cCCccccceeeEEEECCc--------EEEeeccccCccc
Confidence 1234566676655542100 0000 000000 001123899999999999 9999999996556
Q ss_pred cCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhc
Q 004233 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT 460 (766)
Q Consensus 398 ~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gpav~dl~~~F~~~W~~~~ 460 (766)
|.+. ..+|||++++++||+|.+++..|.++|+...
T Consensus 190 y~~~----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~ 224 (506)
T 1v0w_A 190 YLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTC 224 (506)
T ss_dssp HTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred cccC----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhc
Confidence 6421 1379999999999999999999999998754
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=100.00 E-value=5.1e-37 Score=345.26 Aligned_cols=354 Identities=14% Similarity=0.081 Sum_probs=217.4
Q ss_pred cccCCeeEEeeeccccCCCCCceecCCCCccCccchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcH
Q 004233 208 LRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTL 287 (766)
Q Consensus 208 ~~~gn~v~~~~dg~~~~~~~~~~~~~~g~~y~~~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l 287 (766)
...+|.|+++.+| +++|++++++|++|+++|+|++|+|.+| +.| ..|
T Consensus 23 ~~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~d-----------~~g--~~l 69 (458)
T 3hsi_A 23 ALQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQKD-----------EAG--QEI 69 (458)
T ss_dssp ECCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCSS-----------HHH--HHH
T ss_pred cccCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEEecC-----------cHH--HHH
Confidence 3468999999998 8899999999999999999999999886 223 799
Q ss_pred HHHHHHHHhc--CCEEEEEEecCC-------CccCccccccCCccccCcHHHHhhhcCCC--ceEE--ecccCCCcccch
Q 004233 288 GELLKYKSEE--GVRVLLLVWDDK-------TSHDKLGVKTPGVMATHDEETKKFFKHSS--VNCV--LAPRYASSKLSY 354 (766)
Q Consensus 288 ~~aL~~aa~r--GV~VrILv~D~~-------gs~~~~~~~~~~~~~~~~~~~~~~l~~~g--i~v~--~~~~~~~~~~~~ 354 (766)
.++|.+||+| ||+||||+ |.. |+... ..+..+...|.++| |+|+ +++ .|..
T Consensus 70 ~~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~~~~----------~~~~~~~~~L~~~g~nv~v~~~~f~-~p~~---- 133 (458)
T 3hsi_A 70 LDEIYRVKQENPHLDVKVLI-DWHRAQRNLLGAEKS----------ATNADWYCEQRQTYQLPDDPNMFFG-VPIN---- 133 (458)
T ss_dssp HHHHHHHHHHSTTCEEEEEE-ETTGGGSCCC---------------CCHHHHHHHHHHHHTCTTCCCCEEE-ECSS----
T ss_pred HHHHHHHHhcCCCCEEEEEE-ECccccccccccccc----------cccHHHHHHHHhhCCCceEeeeecC-Cccc----
Confidence 9999999999 99999997 883 33221 01134556665555 7766 442 1111
Q ss_pred hhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCce
Q 004233 355 FKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH 434 (766)
Q Consensus 355 ~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~ 434 (766)
....+.|+|+|++|||++ + ++||+||+++++... .....|+
T Consensus 134 ----~~~~~~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~--------------------------~~~~~dr 174 (458)
T 3hsi_A 134 ----TREVFGVLHVKGFVFDDT--------V-LYSGASINNVYLHQF--------------------------EKYRYDR 174 (458)
T ss_dssp ----SSGGGCCEECCEEEETTE--------E-EEESCCBSTTTTTCS--------------------------SCCEECC
T ss_pred ----cccccCcceeeEEEECCC--------E-EEEeeecCHHHhcCC--------------------------cccCcch
Confidence 113467899999999997 8 556699999554210 1123578
Q ss_pred eeeeEEeChHHHHHHHHH--HHHHhhhccchhhhhhhccccccccc--chh-hccccccccCccccccCCCccc-cCCCC
Q 004233 435 DLHCRLDGPAAYDVLINF--EQRWRKATKLTELTFKFKRVSHWRDD--YLI-KIGRISWILSPELSLKTNGTTI-VPRDD 508 (766)
Q Consensus 435 D~~v~v~Gpav~dl~~~F--~~~W~~~~~~~~~~~~~~~~~~~~~~--~l~-~~~~~~~~~~p~~~~~~~~~~~-~p~~~ 508 (766)
| +.+.||.+.|....| ...|+...-.. ++. .|..+ ... ....+...+.+. ..+ +|.
T Consensus 175 d--~~i~g~~~~D~~~~~~~~~~~~g~~v~~-----l~~--~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~-- 236 (458)
T 3hsi_A 175 Y--QKITHAELADSMVNFINDYLLDFSAVYP-----LDV--TNRPRTKEIRGNIRAYRKDLAQN-------GEYSLKS-- 236 (458)
T ss_dssp E--EEEECHHHHHHHHHHHHHTTCCTTTCEE-----SSS--SCCCCGGGTHHHHHHHHHHHHHH-------CCCCCSS--
T ss_pred h--hhhcCchHHHHHHHHHHhhhhcCccchh-----hHH--HhcccchhhHHHHHHHHHhhhhc-------ccccccc--
Confidence 8 448999999999888 45575422110 000 01000 000 000000000000 000 010
Q ss_pred cccccccCCCCCceEeEEEeeccCCCCCCCCCCcccccccccccccCccchhhHHHHHHHHHHhccceEEEecccccccc
Q 004233 509 NVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSS 588 (766)
Q Consensus 509 ~~~~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~ 588 (766)
...+...+++.... + |+. .+..+...++++|.+|+++|+|++|||+++
T Consensus 237 --------~~~~~~~~~v~p~~--~-----~~~----------------~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~- 284 (458)
T 3hsi_A 237 --------AVKLPNVLSVSPLF--G-----LGA----------------SGNELNQVIEDLFLQVQKKLVICTPYFNFP- 284 (458)
T ss_dssp --------CBSSCSSCEEEEEE--E-----ESS----------------SSCHHHHHHHHHHHTCSSEEEEECSSSCCC-
T ss_pred --------cCCCCceEEEecCC--C-----CCC----------------chhHHHHHHHHHHHhcccEEEEEEeccCCC-
Confidence 00011113333211 1 110 135688999999999999999999999953
Q ss_pred CCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCchhhhhHhhHHHH--HHHHHHH---HHHHH
Q 004233 589 YAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTM--QMMYSVV---AQELR 663 (766)
Q Consensus 589 ~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~~~~~~~~~~~~~--~~~~~~~---~~~L~ 663 (766)
. .+..+|..+++ |||+|+||+|.....+.-......++.++...+ ......+ ++.|.
T Consensus 285 -----~-----------~~~~aL~~Aa~--rGV~VrIi~~~~~and~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~ 346 (458)
T 3hsi_A 285 -----R-----------TLQHKIATLLE--NGKRVEIIVGDKVANDFYIPPEQPFKMAGALPYLYESNLRRFCEKFETQI 346 (458)
T ss_dssp -----H-----------HHHHHHHHHHT--TTCEEEEEEECGGGSTTCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHH
T ss_pred -----H-----------HHHHHHHHHHH--CCCeEEEEECCccccCCccCCcchhhhhcchHHHHHHhhhhhHHHHHHHH
Confidence 2 45556666655 569999999974322110011122333444322 1000111 24566
Q ss_pred Hcc-cCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEEEeeeEeEEccCCcCcccCCCCCccc
Q 004233 664 EMQ-VDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTE 742 (766)
Q Consensus 664 ~~G-v~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVDd~~~~IGSaNld~RS~~~n~d~E 742 (766)
++| +. +++|.+ .+.++|+|+|||||++++|||+|||.||+. +|+|
T Consensus 347 ~~G~i~------V~i~~~--------------------------~~~~lHaK~~vvD~~~~~vGS~N~d~RS~~--lN~E 392 (458)
T 3hsi_A 347 ESGQLV------VRLWRD--------------------------GDNTYHLKGVWVDDRYILLTGNNLNPRAWR--LDAE 392 (458)
T ss_dssp HHTSEE------EEEECB--------------------------TTBEECCCEEEETTTEEEEECCCCSHHHHH--TCEE
T ss_pred hCCCeE------EEEEec--------------------------CCCceeEEEEEECCeEEEecCCCCCcchhh--hCce
Confidence 777 21 223532 246999999999999999999999999998 5699
Q ss_pred ceeeeeCCc
Q 004233 743 IAMGSYQPH 751 (766)
Q Consensus 743 ~~v~i~~p~ 751 (766)
++++|++|+
T Consensus 393 ~~~~i~~~~ 401 (458)
T 3hsi_A 393 NGLLIYDPQ 401 (458)
T ss_dssp EEEEEECTT
T ss_pred eEEEEeCCc
Confidence 999999997
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.93 E-value=3.1e-25 Score=258.26 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=108.2
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCcc
Q 004233 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~-----~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~ 315 (766)
.+.|+.+++.|++|++ +|+|+.|.+.++ ..+.++|++||+|||+|+||+ |..+....
T Consensus 346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~d----------------~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~- 407 (687)
T 1xdp_A 346 YHTFEHVLELLRQASFDPSVLAIKINIYRVAKD----------------SRIIDSMIHAAHNGKKVTVVV-ELQARFDE- 407 (687)
T ss_dssp TBCTHHHHHHHHHHHHCTTEEEEEEEESSCCTT----------------CHHHHHHHHHHHTTCEEEEEE-CTTCSSTT-
T ss_pred hhhhhhHHHHHHHHhhCCcceEEEEEeeeecCc----------------HHHHHHHHHHHhcCCEEEEEE-CCCcccch-
Confidence 4568899999999997 999988876554 799999999999999999997 88763210
Q ss_pred ccccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceE---EEEcccc
Q 004233 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT---AFIGGID 392 (766)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~---a~vGG~N 392 (766)
..+..+.+.|.++||+++.+.. .+++|+|++|||++ +...+ +++||.|
T Consensus 408 ---------~~n~~~~~~L~~aGV~V~~~~~----------------~~k~H~Ki~VID~r----e~~~i~~~a~iGS~N 458 (687)
T 1xdp_A 408 ---------EANIHWAKRLTEAGVHVIFSAP----------------GLKIHAKLFLISRK----ENGEVVRYAHIGTGN 458 (687)
T ss_dssp ---------TTTTTTTHHHHHHTCEEEECCT----------------TCEECCEEEEEEEE----ETTEEEEEEEEESSC
T ss_pred ---------hhHHHHHHHHHHCCCEEEEecC----------------CccccceEEEEEec----cCCeEEEEEEEeCCc
Confidence 0112456778889999976421 23589999999952 00015 9999999
Q ss_pred CCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHHhhh
Q 004233 393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKA 459 (766)
Q Consensus 393 i~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gp-av~dl~~~F~~~W~~~ 459 (766)
+++..+ ..|+|+++++.|+ ++.++...|..+|..+
T Consensus 459 ~d~rs~--------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s 494 (687)
T 1xdp_A 459 FNEKTA--------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPY 494 (687)
T ss_dssp SCTTGG--------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTT
T ss_pred CCcchh--------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhc
Confidence 988222 3589999999987 6899999999999763
No 4
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.91 E-value=3.5e-23 Score=239.10 Aligned_cols=274 Identities=13% Similarity=0.129 Sum_probs=185.8
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCcc
Q 004233 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~-----~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~ 315 (766)
.+.|+.++++|++|++ +|+++.|++..+ ..|.++|++||++||+|++|+ | .++...
T Consensus 351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~d----------------s~Iv~ALi~AA~rGv~V~vLv-e-l~arfd- 411 (705)
T 2o8r_A 351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAEN----------------SSIISALEAAAQSGKKVSVFV-E-LKARFD- 411 (705)
T ss_dssp TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCSC----------------CHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred hHhHHHHHHHHHHhccCCCceEEEEEEEEEcCC----------------HHHHHHHHHHHHCCCEEEEEE-e-CCCCcc-
Confidence 6678999999999999 999999988654 799999999999999999997 8 655331
Q ss_pred ccccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccC--CCCCCcceEEEEccccC
Q 004233 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ--ASGNNRKITAFIGGIDL 393 (766)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~--~~~~~~~~~a~vGG~Ni 393 (766)
...+..+.+.|+++||+|.+. + .++++|+|++|||++ -.| +=...+.+|.-|+
T Consensus 412 --------ee~ni~wa~~Le~aGv~Vv~g--~--------------~~lk~H~Ki~lIdrr~~~~g-~~~~y~~igtGN~ 466 (705)
T 2o8r_A 412 --------EENNLRLSERMRRSGIRIVYS--M--------------PGLKVHAKTALILYHTPAGE-RPQGIALLSTGNF 466 (705)
T ss_dssp -----------CHHHHHHHHHHTCEEEEC--C--------------TTCCBCCCEEEEEECCCSSS-CCCEEEEEESSCS
T ss_pred --------hhhhHHHHHHHHHCCCEEEEc--c--------------CCCCceeEEEEEecccccCC-ceeEEEeccccce
Confidence 011246778899999998752 1 245799999999985 111 1122345555554
Q ss_pred CCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHHhhhccchhhhhhhccc
Q 004233 394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFKRV 472 (766)
Q Consensus 394 ~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gp-av~dl~~~F~~~W~~~~~~~~~~~~~~~~ 472 (766)
.+. ...-|.|+++...+| ++.+++..|...|.....
T Consensus 467 n~~--------------------------------tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~~----------- 503 (705)
T 2o8r_A 467 NET--------------------------------TARIYSDTTLMTANTDIVHDVYRLFRILDGDPEP----------- 503 (705)
T ss_dssp SCC--------------------------------CSSCEEEEEEEECCHHHHHHHHHHHHHHTTCCCC-----------
T ss_pred eee--------------------------------EEEEEeeeeeeecChHHHHHHHHHHHHHhCCCCC-----------
Confidence 441 013578999999886 569999999777643100
Q ss_pred ccccccchhhccccccccCccccccCCCccccCCCCcccccccCCCCCceEeEEEeeccCCCCCCCCCCccccccccccc
Q 004233 473 SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLIC 552 (766)
Q Consensus 473 ~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vq~~rs~~~g~~~~~p~~~~~~~~~~~~~ 552 (766)
... .|++-+ |...
T Consensus 504 -----------------------------------------------~~~-~~l~~s---------P~~~---------- 516 (705)
T 2o8r_A 504 -----------------------------------------------ARF-SRLLVA---------RYNM---------- 516 (705)
T ss_dssp -----------------------------------------------SCC-SSCEET---------TTTH----------
T ss_pred -----------------------------------------------CCc-eEEEEC---------CchH----------
Confidence 000 123321 3321
Q ss_pred ccCccchhhHHHHHHHHHHhccc----eEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEec
Q 004233 553 AKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIP 628 (766)
Q Consensus 553 ~~~~~~~~si~~a~~~lI~~Ak~----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp 628 (766)
...+...+...|.+|++ +|+|.++| + ||. .+..+|.+|++ +||+|+||+.
T Consensus 517 ------~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~-l------~D~-----------~ii~aL~~As~--~GV~V~LIVR 570 (705)
T 2o8r_A 517 ------GEAITNLIEREIENVKRGKRGYMLLKMNG-L------QDK-----------NVITQLYRASE--AGVEIDLIVR 570 (705)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCCEEEEEESC-B------CCH-----------HHHHHHHHHHH--TTCEEEEEES
T ss_pred ------HHHHHHHHHHHHHHHhcCCCCEEEEEcCC-C------CCH-----------HHHHHHHHHHH--CCCeEEEEEc
Confidence 46788999999999999 99999998 5 332 44556666655 5599999993
Q ss_pred CCCCCCCCCCchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccc
Q 004233 629 MWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFM 708 (766)
Q Consensus 629 ~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (766)
+.-.-.|. .. + ...+. +..+ +. .
T Consensus 571 GiC~L~Pg----------------------v~-~-sdni~--------V~Si-----------------------vg--r 593 (705)
T 2o8r_A 571 GICCLVPD----------------------MP-Q-SRNIR--------VTRL-----------------------VD--M 593 (705)
T ss_dssp SCBCSCCS----------------------SG-G-GTTEE--------EEEC-----------------------CS--S
T ss_pred cccccCCC----------------------CC-C-CCCeE--------EEee-----------------------HH--H
Confidence 20000000 00 0 00111 1111 00 1
Q ss_pred eEEeeeEEEE---eeeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 709 IYVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 709 ~~~HsK~~IV---Dd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
..-|+|+++. ||.+++||||||+.|||. ++.|+++.|+||++.
T Consensus 594 ~Leh~RIy~f~~gd~~~~~IGSAn~m~Rnl~--~r~Ev~~~i~d~~~~ 639 (705)
T 2o8r_A 594 YLEHSRIWCFHNGGKEEVFISSADWMKRNLY--NRIETACPVLDPTLR 639 (705)
T ss_dssp SEECCCEEEECGGGSCEEEEESCCBCHHHHH--TSBCEEEECCSHHHH
T ss_pred HHhcCEEEEEECCCCcEEEEeccccchhhhh--heeEEEEEEcCHHHH
Confidence 2448888888 889999999999999998 569999999999874
No 5
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.79 E-value=2.8e-19 Score=179.10 Aligned_cols=133 Identities=14% Similarity=0.185 Sum_probs=103.2
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~ 320 (766)
++.|.+|+++|++|+++|+|++|.|.+ ..|.++|.+|++|||+||||+ |......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~-----------------~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS-----------------PQLGRAVQLLHQRGVRVRVIT-DCDYMAL------- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC-----------------HHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCcEEEEE-ecccccc-------
Confidence 778999999999999999999998865 589999999999999999997 8642211
Q ss_pred CccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccCC
Q 004233 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (766)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (766)
.......|..+||+++..... ..+|+|++|||++ ++++||+|++...+.
T Consensus 100 ------~~~~~~~l~~~gi~v~~~~~~----------------~~~H~K~~viD~~--------~~~~GS~N~t~~~~~- 148 (196)
T 4ggj_A 100 ------NGSQIGLLRKAGIQVRHDQDL----------------GYMHHKFAIVDKK--------VLITGSLNWTTQAIQ- 148 (196)
T ss_dssp -------CCHHHHHHHTTCEEEECCSS----------------SCCCCEEEEETTT--------EEEEESCCBCHHHHH-
T ss_pred ------cHHHHHHHHhcCCCccccccc----------------ccccCcEEEEcce--------EEEecCccCChhhhc-
Confidence 113456688899999864321 2389999999999 999999999883331
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHHhhhc
Q 004233 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (766)
Q Consensus 401 ~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gp-av~dl~~~F~~~W~~~~ 460 (766)
..++..+.+.++ +|..+++.|..+|+...
T Consensus 149 -------------------------------~n~E~~~~i~~~~~~~~~~~~F~~~W~~~~ 178 (196)
T 4ggj_A 149 -------------------------------NNRENVLIMEDTEYVRLFLEEFERIWEEFD 178 (196)
T ss_dssp -------------------------------HCCEEEEEECCHHHHHHHHHHHHHHHHHTC
T ss_pred -------------------------------ccceeEEEEECHHHHHHHHHHHHHHHHhCC
Confidence 112455556554 78999999999998754
No 6
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=167.96 Aligned_cols=130 Identities=22% Similarity=0.377 Sum_probs=106.5
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC
Q 004233 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (766)
Q Consensus 10 ~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~ 89 (766)
.++..+.|.|.|+|++|++|+++|..++++ +|.. ....+||||+|.++
T Consensus 22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~~------------------------------~~g~sDPYv~v~l~ 69 (157)
T 2fk9_A 22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFKK------------------------------GHQLLDPYLTVSVD 69 (157)
T ss_dssp --CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSSS------------------------------SCCCCCEEEEEEET
T ss_pred chhccCccEEEEEEEEEECCCCcccccccc--cccc------------------------------CCCCCCeEEEEEEC
Confidence 345678999999999999999888544321 2210 11239999999999
Q ss_pred CeeeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCC----ceeEEEEEccCCCC
Q 004233 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG 164 (766)
Q Consensus 90 ~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~----~~~~~~~~l~~~~~ 164 (766)
++.+.||+++++|+||+|||+|.|.+.. ...|.|+|||+|.++ +++||.+.|+|.++..+ ...+.|++|
T Consensus 70 ~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L----- 143 (157)
T 2fk9_A 70 QVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDL----- 143 (157)
T ss_dssp TEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEEC-----
T ss_pred CEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEEC-----
Confidence 8887899999999999999999999865 457999999999988 89999999999998754 678899999
Q ss_pred CCCCCCceEEEEEEEE
Q 004233 165 SPPKPGASIQLELKFT 180 (766)
Q Consensus 165 ~~~~~~g~i~l~l~~~ 180 (766)
.+.|+|+|+++|.
T Consensus 144 ---~~~G~i~l~l~~~ 156 (157)
T 2fk9_A 144 ---EPEGKVFVVITLT 156 (157)
T ss_dssp ---BSSCEEEEEEEEC
T ss_pred ---CCCcEEEEEEEEE
Confidence 2379999999874
No 7
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=158.10 Aligned_cols=125 Identities=28% Similarity=0.478 Sum_probs=107.3
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~ 94 (766)
..|.|.|+|++|++|+.++. +. +||||++.+..+. .
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~------------------------------------------~dpyv~v~~~~~~-~ 40 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK------------------------------------------PDPIVSVIFKDEK-K 40 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC------------------------------------------CCEEEEEECSSCE-E
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC------------------------------------------CCeEEEEEECCEe-E
Confidence 45899999999999998876 54 9999999998755 7
Q ss_pred eeccccCCCCCeeeeeEEEeecCC----CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEE---ccCCCCCC
Q 004233 95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD---IIAPSGSP 166 (766)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~---l~~~~~~~ 166 (766)
||++++++.||+|||+|.|.+..+ ...|.|+|||+|.++ +++||++.++|.++..+.....|++ |....+.
T Consensus 41 kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~- 119 (140)
T 2dmh_A 41 KTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ- 119 (140)
T ss_dssp ECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC-
T ss_pred EeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC-
Confidence 999999999999999999999753 456999999999997 8999999999999988888889988 6544332
Q ss_pred CCCCceEEEEEEEEecCCC
Q 004233 167 PKPGASIQLELKFTPCDKN 185 (766)
Q Consensus 167 ~~~~g~i~l~l~~~~~~~~ 185 (766)
...|+|.|+++|.|....
T Consensus 120 -~~~G~l~l~~~~~p~~~~ 137 (140)
T 2dmh_A 120 -DTGATIDLVIGYDPPSGP 137 (140)
T ss_dssp -EEEEEEEEEEEECCCBSS
T ss_pred -CCCCEEEEEEEEECCCCC
Confidence 246999999999997553
No 8
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.75 E-value=9e-18 Score=158.00 Aligned_cols=130 Identities=17% Similarity=0.390 Sum_probs=106.2
Q ss_pred eeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeee
Q 004233 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (766)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~ 93 (766)
.+.|.|.|+|++|++|+++|..+++. +.. +.+...+||||++.+++..+
T Consensus 3 ~~~g~L~v~v~~a~~L~~~d~~~~~~---~g~----------------------------~~~~~~~DPyv~v~l~~~~~ 51 (136)
T 1gmi_A 3 VFNGLLKIKICEAVSLKPTAWSLRDA---VGP----------------------------RPQTFLLDPYIALNVDDSRI 51 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC----CCS----------------------------SCCCCCCCEEEEEEETTEEE
T ss_pred ccceEEEEEEEeCcCCCCcccccccc---ccc----------------------------ccCCcCcCcEEEEEECCeEe
Confidence 57899999999999999887544210 100 01123499999999988887
Q ss_pred eeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCC--ceeEEEEEccCCCCCCCCCC
Q 004233 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSGSPPKPG 170 (766)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~--~~~~~~~~l~~~~~~~~~~~ 170 (766)
.+|+++++|.||+|||+|.|.+... ..|.|+|||+|.++ +++||.+.+++.++..+ ...+.|++| ++.
T Consensus 52 ~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L--------~~~ 122 (136)
T 1gmi_A 52 GQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL--------EPE 122 (136)
T ss_dssp EECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC--------BSS
T ss_pred eeeeEECCCcCCccCCEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc--------CCC
Confidence 8999999999999999999998766 67999999999887 89999999999999853 345889998 247
Q ss_pred ceEEEEEEEEecC
Q 004233 171 ASIQLELKFTPCD 183 (766)
Q Consensus 171 g~i~l~l~~~~~~ 183 (766)
|+|+|+++|.+..
T Consensus 123 G~i~l~l~~~~~~ 135 (136)
T 1gmi_A 123 GKVYVIIDLSGSS 135 (136)
T ss_dssp CEEEEEEEEEEEE
T ss_pred eEEEEEEEEEecC
Confidence 9999999998753
No 9
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.75 E-value=1.2e-17 Score=160.21 Aligned_cols=123 Identities=21% Similarity=0.381 Sum_probs=99.9
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-----
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----- 90 (766)
.+.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 19 ~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~ 56 (153)
T 3b7y_A 19 SRIVRVRVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMNGV 56 (153)
T ss_dssp CEEEEEEEEEEESCC-------------------------------------------------CCEEEEEEEEETTTEE
T ss_pred ccEEEEEEEEeeCCCCCCCCCC------------------------------------------CCcEEEEEEECCCCcc
Confidence 4899999999999998886665 99999999963
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCce------eEEEEEccCCC
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAPS 163 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~------~~~~~~l~~~~ 163 (766)
....||++++++.||+|||+|.|.+......|.|+|||++.++ +++||++.++|.++..+.. ...|++|....
T Consensus 57 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~ 136 (153)
T 3b7y_A 57 LTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS 136 (153)
T ss_dssp EEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS
T ss_pred ceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc
Confidence 2567999999999999999999999887778999999999987 8999999999999975443 25899995443
Q ss_pred CCCCCCCceEEEEEEEEe
Q 004233 164 GSPPKPGASIQLELKFTP 181 (766)
Q Consensus 164 ~~~~~~~g~i~l~l~~~~ 181 (766)
+ ..+..|+|+|+++|.|
T Consensus 137 ~-~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 137 H-KSRVKGYLRLKMTYLP 153 (153)
T ss_dssp T-TCCCCSEEEEEEEECC
T ss_pred C-CCCcceEEEEEEEEeC
Confidence 2 3356899999999987
No 10
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.74 E-value=8.7e-18 Score=157.84 Aligned_cols=124 Identities=24% Similarity=0.497 Sum_probs=107.8
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~ 94 (766)
..|.|.|+|++|++|+.++..+. +||||+|.+.++. .
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~ 44 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNN------------------------------------------MDPYVQLTCRTQD-Q 44 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCS------------------------------------------SCCCEEEESSSCE-E
T ss_pred CcEEEEEEEEeccCCCCcccCCC------------------------------------------cCceEEEEECCcc-c
Confidence 35999999999999998886665 9999999998865 5
Q ss_pred eecccc-CCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceec-cCCceeEEEEEccCCCCCCCCCCc
Q 004233 95 RTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTI-ATGELISRWYDIIAPSGSPPKPGA 171 (766)
Q Consensus 95 ~T~~~~-~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~g 171 (766)
||++++ ++.||+|||+|.|.+......|.|+|||++.++ +++||++.++|.++ ..+.....|++|. ..+ +..|
T Consensus 45 kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~---~~~G 120 (136)
T 1wfj_A 45 KSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDE---EYKG 120 (136)
T ss_dssp ECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETT---EEEE
T ss_pred eeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCC---ccCE
Confidence 999998 899999999999999987778999999999987 89999999999999 4566677899996 322 4689
Q ss_pred eEEEEEEEEecCCC
Q 004233 172 SIQLELKFTPCDKN 185 (766)
Q Consensus 172 ~i~l~l~~~~~~~~ 185 (766)
+|+|+++|.|....
T Consensus 121 ~i~l~l~~~p~~~~ 134 (136)
T 1wfj_A 121 EIWVALSFKPSGPS 134 (136)
T ss_dssp EEEEEEEEEECCSC
T ss_pred EEEEEEEEEeCCCC
Confidence 99999999998643
No 11
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.74 E-value=6.5e-17 Score=154.19 Aligned_cols=121 Identities=23% Similarity=0.456 Sum_probs=104.0
Q ss_pred eeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeee
Q 004233 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (766)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~ 93 (766)
.+.|.|.|+|++|++|+.+|..+. +||||++.++.+.
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~- 50 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGS------------------------------------------SDPYVTVQVGKTK- 50 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE-
T ss_pred ccccEEEEEEEeeeCCCCCCCCCC------------------------------------------cCeEEEEEECCEE-
Confidence 457999999999999999887665 9999999998755
Q ss_pred eeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCC-----------C-CceeEEEeccceeccCCceeEEEEEccC
Q 004233 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-----------G-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (766)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~-----------~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~ 161 (766)
.+|++++++.||.|||+|.|.+..+...|.|+|||+|.+ + +++||++.++|.++. .....|++|..
T Consensus 51 ~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~ 128 (148)
T 3kwu_A 51 KRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDK 128 (148)
T ss_dssp EECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBC
T ss_pred EECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEccc
Confidence 699999999999999999999988888899999999985 4 999999999999983 45679999953
Q ss_pred CCCCCCCCCceEEEEEEEE
Q 004233 162 PSGSPPKPGASIQLELKFT 180 (766)
Q Consensus 162 ~~~~~~~~~g~i~l~l~~~ 180 (766)
. +......|+|.|+++|.
T Consensus 129 ~-~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 129 R-TDKSAVSGAIRLHISVE 146 (148)
T ss_dssp S-STTCCCCCEEEEEEEEE
T ss_pred C-CCCCCCceEEEEEEEEE
Confidence 3 33334679999999985
No 12
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.73 E-value=3.1e-17 Score=153.58 Aligned_cols=121 Identities=25% Similarity=0.382 Sum_probs=105.2
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeee
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~ 94 (766)
..|.|.|+|++|++|+.++..+. +||||++.+.++. .
T Consensus 11 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~ 47 (133)
T 2ep6_A 11 DVGILQVKVLKAADLLAADFSGK------------------------------------------SDPFCLLELGNDR-L 47 (133)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSC------------------------------------------CCEEEEEEETTEE-E
T ss_pred CceEEEEEEEeeECCCCCCCCCC------------------------------------------cCeEEEEEECCEE-E
Confidence 45999999999999998886665 9999999998865 5
Q ss_pred eeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCceE
Q 004233 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (766)
Q Consensus 95 ~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~i 173 (766)
||++++++.||+|||+|.|.+..+...|.|+|||+|.++ +++||++.++|.++..+. ..|++|....+. ....|+|
T Consensus 48 kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~-~~~~G~i 124 (133)
T 2ep6_A 48 QTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLE-QAFKGVI 124 (133)
T ss_dssp ECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTT-SCCSSEE
T ss_pred EeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCC-CccceEE
Confidence 999999999999999999999987778999999999997 999999999999997654 489999654433 2578999
Q ss_pred EEEEEEEe
Q 004233 174 QLELKFTP 181 (766)
Q Consensus 174 ~l~l~~~~ 181 (766)
+|+++|..
T Consensus 125 ~l~i~~~~ 132 (133)
T 2ep6_A 125 YLEMDLIY 132 (133)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 99999864
No 13
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.72 E-value=5.2e-17 Score=159.73 Aligned_cols=124 Identities=21% Similarity=0.371 Sum_probs=98.6
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-----
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----- 90 (766)
.|.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~ 44 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMSGI 44 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC------------------------------------------CCEEEEEEEEETTTEE
T ss_pred cEEEEEEEEEeeCCCCcCCCCC------------------------------------------cCcEEEEEEECCCCCc
Confidence 3899999999999999887665 99999999953
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCcee-E-----EEEEccCCC
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-S-----RWYDIIAPS 163 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~-~-----~~~~l~~~~ 163 (766)
..+.+|++++++.||+|||+|.|.+......|.|+|||++.++ +++||++.|+|..+..+... . .|++|....
T Consensus 45 ~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~ 124 (176)
T 3m7f_B 45 LTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS 124 (176)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS
T ss_pred ccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC
Confidence 1467999999999999999999999887778999999999987 89999999999999865433 2 799995433
Q ss_pred CCCCCCCceEEEEEEEEec
Q 004233 164 GSPPKPGASIQLELKFTPC 182 (766)
Q Consensus 164 ~~~~~~~g~i~l~l~~~~~ 182 (766)
. ..+..|+|.|+++|.|.
T Consensus 125 ~-~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 125 H-KSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp T-TCCCCSEEEEEEEECC-
T ss_pred C-CCccCEEEEEEEEEEeC
Confidence 3 33568999999999997
No 14
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.72 E-value=3.8e-17 Score=156.93 Aligned_cols=135 Identities=16% Similarity=0.257 Sum_probs=108.1
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~ 320 (766)
.++++.++++|++|+++|+|++|+|.+ ..|.++|.+|++|||+||||+ |..++...
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~-----------------~~i~~aL~~a~~rGV~Vril~-~~~~~~~~------ 68 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA-----------------PDIMKALVAAKKRGVDVKIVI-DERGNTGR------ 68 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC-----------------HHHHHHHHHHHHTTCEEEEEE-ESTTCCSH------
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC-----------------HHHHHHHHHHHHCCCEEEEEE-eCcccccc------
Confidence 467899999999999999999998842 589999999999999999997 77653210
Q ss_pred CccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEEEccccCCCcccCC
Q 004233 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (766)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (766)
......+.|.++|++++..... .++|.|++|||++ ++++||+|++...+
T Consensus 69 -----~~~~~~~~L~~~gv~v~~~~~~----------------~~~H~K~~iiD~~--------~~~iGS~N~~~~~~-- 117 (155)
T 1byr_A 69 -----ASIAAMNYIANSGIPLRTDSNF----------------PIQHDKVIIVDNV--------TVETGSFNFTKAAE-- 117 (155)
T ss_dssp -----HHHHHHHHHHHTTCCEEEECSS----------------SCCCCCEEEETTT--------EEEEESCCBSHHHH--
T ss_pred -----ccHHHHHHHHHCCCeEEEcCCc----------------ccccceEEEECCC--------EEEEECCCCCcccc--
Confidence 1234567788899998864321 1389999999998 99999999987222
Q ss_pred CCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh--HHHHHHHHHHHHHhhhc
Q 004233 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKAT 460 (766)
Q Consensus 401 ~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gp--av~dl~~~F~~~W~~~~ 460 (766)
..|++.++.+.|+ .+.++...|.+.|+.+.
T Consensus 118 ------------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 ------------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp ------------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ------------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 2467899999994 78999999999998754
No 15
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.69 E-value=1e-16 Score=148.43 Aligned_cols=117 Identities=25% Similarity=0.429 Sum_probs=97.3
Q ss_pred ceEEEEEEEEeeCCCCC---CCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--
Q 004233 16 HGDLDLKIIRARRLPNM---DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~-- 90 (766)
.|.|.|+|++|++|+.+ +..+. +||||++.+.+
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~------------------------------------------~dpyv~v~~~~~~ 39 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTTP 39 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCC------------------------------------------CCEEEEEECTTST
T ss_pred CcEEEEEEEeeeCCCCCCccccCCC------------------------------------------CCCEEEEEEccCC
Confidence 48899999999999975 33333 99999999975
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCCCCCCCC
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 169 (766)
....||++++++.||+|||+|.|.+..+ ...|.|+|||++..++++||++.++|.++..+.....|++|. + ..
T Consensus 40 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~-~-----~~ 113 (126)
T 1rlw_A 40 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN-Q-----VT 113 (126)
T ss_dssp TCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEET-T-----TE
T ss_pred CceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcC-C-----Cc
Confidence 3567999999999999999999999644 556999999999988999999999999999888899999993 2 23
Q ss_pred CceEEEEEEEE
Q 004233 170 GASIQLELKFT 180 (766)
Q Consensus 170 ~g~i~l~l~~~ 180 (766)
.|.|+++++..
T Consensus 114 ~g~i~~~le~~ 124 (126)
T 1rlw_A 114 EMVLEMSLEVA 124 (126)
T ss_dssp EEEEEEEEECC
T ss_pred eEEEEEEEEeC
Confidence 56666666543
No 16
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.68 E-value=3.1e-17 Score=167.26 Aligned_cols=150 Identities=13% Similarity=0.119 Sum_probs=108.9
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~ 320 (766)
.+.++.|+++|++|+++|+|++|.|.. ..|.++|.+||+|||+||||+ |..++...
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~Y~~~~-----------------~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~------ 112 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAIYTFTS-----------------LFLADSIKRALQRGVIIRIIS-DGEMVYSK------ 112 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSCBCC-----------------HHHHHHHHHHHHHTCEEEEEC-CTTTTTST------
T ss_pred HHHHHHHHHHHHHhhhEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCeEEEEE-echhhhhh------
Confidence 678999999999999999999998854 589999999999999999997 98765431
Q ss_pred CccccCcHHHHhhhcCCCceEEecccCCCcccc--hhhh--ccccceecccceEEEEccCCCCCCcceEEEEccccCCCc
Q 004233 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLS--YFKQ--QIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (766)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~--~~~~--~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~ 396 (766)
......+..+++.+...........+ .... ...+.+.++|+|++|+|+. ++++||+|++..
T Consensus 113 -------~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~t~~ 177 (220)
T 4gel_A 113 -------GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNWTAL 177 (220)
T ss_dssp -------TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCBSHH
T ss_pred -------HHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCcccccc
Confidence 12234455566666543211111111 0000 0123356789999999998 999999999873
Q ss_pred ccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhhc
Q 004233 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT 460 (766)
Q Consensus 397 r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gpav~dl~~~F~~~W~~~~ 460 (766)
.+ ...|.++.+...|++|.++++.|.++|+...
T Consensus 178 s~-------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~ 210 (220)
T 4gel_A 178 GL-------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFA 210 (220)
T ss_dssp HH-------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSE
T ss_pred cc-------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 22 1357788888888999999999999998743
No 17
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.67 E-value=6.3e-16 Score=144.44 Aligned_cols=120 Identities=19% Similarity=0.357 Sum_probs=99.3
Q ss_pred eEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-eeeee
Q 004233 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (766)
Q Consensus 17 ~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~-~~~~~ 95 (766)
..|+|+|++|++|+.+|..+. +||||++.+.. ....+
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDpyv~v~~~~~~~~~k 42 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRL------------------------------------------PDPFAKIVVDGSGQCHS 42 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCC------------------------------------------CCEEEEEEETTTCCEEE
T ss_pred EEEEEEEEEeECCCCCCCCCC------------------------------------------cCeEEEEEECCCCceEE
Confidence 579999999999999887765 99999999964 46679
Q ss_pred eccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC----CceeEEEeccceecc-CCceeEEEEEccCCC-CCCCCC
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIA-TGELISRWYDIIAPS-GSPPKP 169 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~----~~~iG~~~~~l~~~~-~~~~~~~~~~l~~~~-~~~~~~ 169 (766)
|++++++.||+|||+|.|.+..+. .|.|+|||++.++ +++||.+.+++..+. .......|++|.... ..+.+.
T Consensus 43 T~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~ 121 (132)
T 3pyc_A 43 TDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAV 121 (132)
T ss_dssp CCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCC
T ss_pred CCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCce
Confidence 999999999999999999998765 5999999999885 699999999999883 333445788985442 223356
Q ss_pred CceEEEEEEE
Q 004233 170 GASIQLELKF 179 (766)
Q Consensus 170 ~g~i~l~l~~ 179 (766)
.|+|.+++++
T Consensus 122 ~G~i~v~l~~ 131 (132)
T 3pyc_A 122 RGQIVVSLQT 131 (132)
T ss_dssp CSEEEEEEEE
T ss_pred eEEEEEEEEc
Confidence 8999999875
No 18
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.65 E-value=6.9e-16 Score=151.27 Aligned_cols=126 Identities=19% Similarity=0.313 Sum_probs=102.4
Q ss_pred EeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCee
Q 004233 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (766)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~ 92 (766)
....+.|.|+|++|++|++.+..+. +||||+|.+.+ .
T Consensus 32 ~~~~~~L~V~V~~A~~L~~~~~~~~------------------------------------------sDPYv~v~~~~-~ 68 (173)
T 2nq3_A 32 LTMKSQLQITVISAKLKENKKNWFG------------------------------------------PSPYVEVTVDG-Q 68 (173)
T ss_dssp CSCCEEEEEEEEEEEECCCC--CCC------------------------------------------CCEEEEEEETT-E
T ss_pred cCCceEEEEEEEEeECCCCcccCCC------------------------------------------CCeEEEEEECC-E
Confidence 3467899999999999984433332 99999999988 5
Q ss_pred eeeeccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCC-----ceeEEEEEccCCCCCC
Q 004233 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-----ELISRWYDIIAPSGSP 166 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~-----~~~~~~~~l~~~~~~~ 166 (766)
+.||+++++++||+|||+|.|.+. +...|.|+|||+|.++ +++||++.++|.++..+ +....|++|.... ..
T Consensus 69 ~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~-~~ 146 (173)
T 2nq3_A 69 SKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK-EP 146 (173)
T ss_dssp EEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESS-CT
T ss_pred EeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCC-CC
Confidence 679999999999999999999985 4667999999999987 89999999999998632 1236799995542 23
Q ss_pred CCCCceEEEEEEEEecC
Q 004233 167 PKPGASIQLELKFTPCD 183 (766)
Q Consensus 167 ~~~~g~i~l~l~~~~~~ 183 (766)
.+..|+|.+.+.|.+..
T Consensus 147 ~~~~G~L~v~l~~l~~~ 163 (173)
T 2nq3_A 147 TETIGDLSICLDGLQLE 163 (173)
T ss_dssp TSEEEEEEEEEESEECC
T ss_pred CcccEEEEEEEeeeecc
Confidence 35689999999999873
No 19
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.62 E-value=3.3e-15 Score=140.09 Aligned_cols=108 Identities=17% Similarity=0.406 Sum_probs=92.5
Q ss_pred ceeEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC
Q 004233 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (766)
Q Consensus 10 ~~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~ 89 (766)
.+..+..|.|.|+|++|++|+. +..+. +||||+|.+.
T Consensus 13 ~~~~~~~~~L~V~V~~a~~L~~-~~~g~------------------------------------------~DPyv~v~l~ 49 (134)
T 2b3r_A 13 LSVSYRNGTLFIMVMHIKDLVT-EDGAD------------------------------------------PNPYVKTYLL 49 (134)
T ss_dssp EEEEEETTEEEEEEEEEECCCC-TTSCC------------------------------------------CCEEEEEEEE
T ss_pred EEEeecCCEEEEEEEEeeCCCC-CCCCC------------------------------------------CCeEEEEEEE
Confidence 3456788999999999999995 54443 9999999982
Q ss_pred ----CeeeeeeccccCCCCCeeeeeEEEe-ecC---CCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEcc
Q 004233 90 ----QATVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (766)
Q Consensus 90 ----~~~~~~T~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~ 160 (766)
...+.||++++++.||+|||+|.|. +.. ....|.|+|||+|.++ +++||++.++|.++..+.....|++|.
T Consensus 50 ~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 129 (134)
T 2b3r_A 50 PDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129 (134)
T ss_dssp SCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred cCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECC
Confidence 2356799999999999999999999 764 3457999999999987 899999999999998888889999994
No 20
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.60 E-value=2.5e-15 Score=142.31 Aligned_cols=104 Identities=33% Similarity=0.537 Sum_probs=91.5
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Cee
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~~~ 92 (766)
..+.|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 69 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 69 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBC------------------------------------------CCEEEEEEEESCCSC
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------cCcEEEEEEECCCCc
Confidence 46789999999999998876555 9999999992 345
Q ss_pred eeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEcc
Q 004233 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~ 160 (766)
..||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.++|.++..+.....|++|.
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 67999999999999999999998754 357999999999987 899999999999999888899999993
No 21
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.60 E-value=3.3e-15 Score=143.15 Aligned_cols=104 Identities=33% Similarity=0.537 Sum_probs=91.7
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Cee
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~~~ 92 (766)
..+.|.|+|++|++|+.++..+. +||||+|.+. ...
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 77 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 77 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETTCCS
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------cCeEEEEEEEcCCCc
Confidence 45899999999999998886655 9999999993 235
Q ss_pred eeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEcc
Q 004233 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~ 160 (766)
..||++++++.||+|||+|.|.+..+ ...|.|+|||++.++ +++||++.++|.++..+.....|++|.
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 67999999999999999999998753 457999999999987 899999999999998888889999994
No 22
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=142.98 Aligned_cols=106 Identities=17% Similarity=0.326 Sum_probs=90.5
Q ss_pred ceEEEEEEEEeeCCCCCC-CcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004233 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---- 90 (766)
.+.|.|+|++|++|+.++ ..+. +||||++.+..
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKR------------------------------------------SNPYVKTYLLPDKSR 59 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTB------------------------------------------CCEEEEEEEETCCSG
T ss_pred CCEEEEEEEEecCCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 589999999999999877 3443 99999999952
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCC
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~ 163 (766)
..+.||++++++.||+|||+|.|.+.... ..|.|+|||+|.++ +++||.+.++|.++..+.....|++|....
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 136 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence 23679999999999999999999988753 34999999999987 899999999999998777788999995443
No 23
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.60 E-value=3.7e-15 Score=145.85 Aligned_cols=108 Identities=23% Similarity=0.416 Sum_probs=93.9
Q ss_pred EeeceEEEEEEEEeeCCCCCCC-cchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-
Q 004233 13 IYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (766)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~- 90 (766)
.|..|.|.|+|++|++|+.+|. .+. +||||+|.+..
T Consensus 26 ~y~~~~L~V~v~~a~~L~~~d~~~g~------------------------------------------~DPyv~v~l~~~ 63 (171)
T 2q3x_A 26 EDKKGQLEVEVIRARSLTQKPGSKST------------------------------------------PAPYVKVYLLEN 63 (171)
T ss_dssp EEETTEEEEEEEEEESCCCCC---CC------------------------------------------CEEEEEEEEEET
T ss_pred EECCCEEEEEEEEeeCCCCCCcCCCC------------------------------------------CCceEEEEEECC
Confidence 5678999999999999998884 444 99999999843
Q ss_pred -e--eeeeeccccCCCCCeeeeeEEEeecCCCceEEEEEE-EcCCCC-CceeEEEeccceeccCCceeEEEEEccCC
Q 004233 91 -A--TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (766)
Q Consensus 91 -~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~-d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~ 162 (766)
. .+.||++++++.||+|||+|.|.+......|.|+|| |+|.++ +++||.+.++|.++..+.....|++|...
T Consensus 64 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 64 GACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp TEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 1 367999999999999999999999777777999999 999987 89999999999999878888999999543
No 24
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.60 E-value=4.1e-15 Score=141.94 Aligned_cols=107 Identities=22% Similarity=0.389 Sum_probs=92.6
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC-
Q 004233 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (766)
Q Consensus 12 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~- 90 (766)
+.+..+.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 26 l~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~ 63 (149)
T 1a25_A 26 AHIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPD 63 (149)
T ss_dssp EEESSSEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEESC
T ss_pred EEecCCEEEEEEEEeeCCCCCCCCCC------------------------------------------cCeEEEEEEECC
Confidence 35668899999999999998886655 99999999953
Q ss_pred ---eeeeeeccccCCCCCeeeeeEEEeecCC--CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccC
Q 004233 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (766)
Q Consensus 91 ---~~~~~T~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~ 161 (766)
....||++++++.||+|||+|.|.+... ...|.|+|||+|.++ +++||.+.|+|.++..+ ....||+|..
T Consensus 64 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 64 PKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp TTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 4567999999999999999999998764 346999999999986 89999999999999865 5789999954
No 25
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.60 E-value=1.4e-15 Score=143.80 Aligned_cols=109 Identities=28% Similarity=0.437 Sum_probs=93.5
Q ss_pred eeEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC
Q 004233 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (766)
Q Consensus 11 ~~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~ 90 (766)
.+.|..|.|.|+|++|++|+.+|..+. +||||++.+..
T Consensus 12 ~l~y~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~ 49 (142)
T 1rh8_A 12 QINYDLGNLIIHILQARNLVPRDNNGY------------------------------------------SDPFVKVYLLP 49 (142)
T ss_dssp EEEEETTEEEEEEEEEESCCCCSSSSC------------------------------------------SCCEEEEEETT
T ss_pred EEEEcCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCceEEEEEec
Confidence 346778999999999999999886665 99999999965
Q ss_pred e-------------eeeeeccccCCCCCeeeeeEEEe-ecC---CCceEEEEEEEcCCCC-CceeEEEeccceeccCCce
Q 004233 91 A-------------TVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (766)
Q Consensus 91 ~-------------~~~~T~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~ 152 (766)
. ...||++++++.||+|||+|.|. +.. ....|.|+|||+|.++ +++||.+.++|..+..+..
T Consensus 50 ~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~ 129 (142)
T 1rh8_A 50 GRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN 129 (142)
T ss_dssp SSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTT
T ss_pred CCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCC
Confidence 3 24799999999999999999997 543 3457999999999987 8999999999999987777
Q ss_pred eEEEEEccC
Q 004233 153 ISRWYDIIA 161 (766)
Q Consensus 153 ~~~~~~l~~ 161 (766)
...|++|..
T Consensus 130 ~~~W~~L~~ 138 (142)
T 1rh8_A 130 TPRWYPLKE 138 (142)
T ss_dssp CCEEEECBC
T ss_pred CCeEEECCc
Confidence 889999943
No 26
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.60 E-value=1.1e-14 Score=153.98 Aligned_cols=126 Identities=29% Similarity=0.491 Sum_probs=107.7
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--ee
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--~~ 92 (766)
..|.|.|+|++|++|+.+|..+. +||||++.+.. ..
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~ 54 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 54 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSS------------------------------------------CCEEEEEEEETCTTS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeEEEEEEEcCCCc
Confidence 46899999999999999886665 99999999943 34
Q ss_pred eeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCCC
Q 004233 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 168 (766)
..+|++++++.||+|||+|.|.+..+ ...|.|+|||.|.++ +++||++.++|.++..+.....|++|....+....
T Consensus 55 ~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~ 134 (284)
T 2r83_A 55 KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134 (284)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCC
T ss_pred eEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccccccc
Confidence 57999999999999999999998754 356999999999987 89999999999999888888999999655443335
Q ss_pred CCceEEEEEEEEec
Q 004233 169 PGASIQLELKFTPC 182 (766)
Q Consensus 169 ~~g~i~l~l~~~~~ 182 (766)
..|+|.++++|.|.
T Consensus 135 ~~G~i~l~l~~~p~ 148 (284)
T 2r83_A 135 KLGDICFSLRYVPT 148 (284)
T ss_dssp CCCEEEEEEEEETT
T ss_pred ccccEEEEEEecCc
Confidence 67999999999874
No 27
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.59 E-value=5.4e-15 Score=138.71 Aligned_cols=108 Identities=22% Similarity=0.401 Sum_probs=92.8
Q ss_pred eEeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--
Q 004233 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-- 89 (766)
Q Consensus 12 ~~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~-- 89 (766)
+.+..|.|.|+|++|++|+.++..+. +||||++.+.
T Consensus 11 l~~~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~ 48 (137)
T 3rdl_A 11 AEVTDEKLHVTVRDAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPD 48 (137)
T ss_dssp EEEETTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEECC
T ss_pred EEEcCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeeEEEEEEcC
Confidence 35678999999999999999887665 9999999993
Q ss_pred --CeeeeeeccccCCCCCeeeeeEEEeecCCC--ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCC
Q 004233 90 --QATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (766)
Q Consensus 90 --~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~ 162 (766)
.....+|++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||.+.++|.++..+. ...|++|...
T Consensus 49 ~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 49 PKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp TTCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred CCCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 345679999999999999999999987643 46999999999987 899999999999997554 7899999543
No 28
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=145.40 Aligned_cols=104 Identities=25% Similarity=0.415 Sum_probs=89.9
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC---e
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A 91 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---~ 91 (766)
..+.|.|+|++|++|+.+|..+. +||||++.+.. .
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~------------------------------------------sDPyVkv~l~~~~~~ 78 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQD------------------------------------------QKVNIRVAVLPCSES 78 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCC------------------------------------------SEEEEEEEEESCSCH
T ss_pred CCCEEEEEEEEccCcCCcccCCC------------------------------------------CCEEEEEEEecCCCC
Confidence 35789999999999998886655 99999999943 2
Q ss_pred --eeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceecc-CCceeEEEEEcc
Q 004233 92 --TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDII 160 (766)
Q Consensus 92 --~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~-~~~~~~~~~~l~ 160 (766)
.+.||+++++|+||+|||+|.|.+... ...|.|+|||+|.++ +++||.+.++|.++. .+.....||+|.
T Consensus 79 ~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 79 TTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 367999999999999999999998753 346999999999987 899999999999996 366788999983
No 29
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8.8e-15 Score=138.22 Aligned_cols=106 Identities=28% Similarity=0.467 Sum_probs=91.3
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Cee
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~~~ 92 (766)
..+.|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKH 61 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEEEEESCCSS
T ss_pred CCCEEEEEEEEeECCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 46889999999999998886655 9999999993 345
Q ss_pred eeeeccccCCCCCeeeeeEEEeecC----CCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCC
Q 004233 93 VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~ 162 (766)
..||++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.++|.++..+.....|++|...
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 6799999999999999999998533 2457999999999987 89999999999999888788899999433
No 30
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.58 E-value=1.2e-15 Score=152.59 Aligned_cols=119 Identities=18% Similarity=0.099 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCc
Q 004233 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (766)
Q Consensus 560 ~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~ 639 (766)
.+....++++|++|+++|+|+..+|. ...++.+|.+|++ |||+|+||++......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~------------------~~~i~~aL~~aa~--rGV~Vrii~D~~~~~~----- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFS------------------SPQLGRAVQLLHQ--RGVRVRVITDCDYMAL----- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBC------------------CHHHHHHHHHHHH--TTCEEEEEESSCCC-------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeC------------------CHHHHHHHHHHHH--cCCcEEEEEecccccc-----
Confidence 35678899999999999999984443 1256677777766 5599999998521100
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEEEe
Q 004233 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (766)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVD 719 (766)
..+ ....|.++|+++ + .+. ...++|+|++|||
T Consensus 100 --------~~~-------~~~~l~~~gi~v----~--~~~---------------------------~~~~~H~K~~viD 131 (196)
T 4ggj_A 100 --------NGS-------QIGLLRKAGIQV----R--HDQ---------------------------DLGYMHHKFAIVD 131 (196)
T ss_dssp ---------CC-------HHHHHHHTTCEE----E--ECC---------------------------SSSCCCCEEEEET
T ss_pred --------cHH-------HHHHHHhcCCCc----c--ccc---------------------------ccccccCcEEEEc
Confidence 000 145678889875 1 121 1247899999999
Q ss_pred eeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 720 DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 720 d~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
++++++||+||+.+|+.. |.|.++++++++++
T Consensus 132 ~~~~~~GS~N~t~~~~~~--n~E~~~~i~~~~~~ 163 (196)
T 4ggj_A 132 KKVLITGSLNWTTQAIQN--NRENVLIMEDTEYV 163 (196)
T ss_dssp TTEEEEESCCBCHHHHHH--CCEEEEEECCHHHH
T ss_pred ceEEEecCccCChhhhcc--cceeEEEEECHHHH
Confidence 999999999999999984 59999999999763
No 31
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.57 E-value=1.1e-14 Score=135.22 Aligned_cols=101 Identities=26% Similarity=0.444 Sum_probs=83.3
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC----Ce
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~----~~ 91 (766)
.+.|.|+|++|++|+.++..+. +||||++.+. ..
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 54 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK 54 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCC------------------------------------------BCEEEEEEEESSCSGG
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence 4789999999999998886665 9999999992 24
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecC----CCceEEEEEEEcCCCC---CceeEEEeccceeccCCceeEEEEEc
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d~~~~~---~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
...||++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.++|.++.... ...||+|
T Consensus 55 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 55 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp GEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred cceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 56799999999999999999999543 2356999999999886 899999999999987544 7899997
No 32
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.56 E-value=5e-15 Score=142.07 Aligned_cols=121 Identities=19% Similarity=0.151 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCc
Q 004233 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (766)
Q Consensus 560 ~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~ 639 (766)
.++...++++|.+|+++|+|+++||.. ..+..+|.++++ |||+|+||++.... ..
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~------------------~~i~~aL~~a~~--rGV~Vril~~~~~~----~~- 67 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA------------------PDIMKALVAAKK--RGVDVKIVIDERGN----TG- 67 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC------------------HHHHHHHHHHHH--TTCEEEEEEESTTC----CS-
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC------------------HHHHHHHHHHHH--CCCEEEEEEeCccc----cc-
Confidence 467899999999999999999988841 245566667766 55999999996321 10
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEEEe
Q 004233 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (766)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVD 719 (766)
..... ..+.|.+.|+++ + +|. ....+|+|++|||
T Consensus 68 ------~~~~~-------~~~~L~~~gv~v----~--~~~---------------------------~~~~~H~K~~iiD 101 (155)
T 1byr_A 68 ------RASIA-------AMNYIANSGIPL----R--TDS---------------------------NFPIQHDKVIIVD 101 (155)
T ss_dssp ------HHHHH-------HHHHHHHTTCCE----E--EEC---------------------------SSSCCCCCEEEET
T ss_pred ------cccHH-------HHHHHHHCCCeE----E--EcC---------------------------CcccccceEEEEC
Confidence 11222 256788889875 1 221 0237899999999
Q ss_pred eeEeEEccCCcCcccCCCCCcccceeeeeCC-cch
Q 004233 720 DEYVIMGSANINQRSMAGSKDTEIAMGSYQP-HHT 753 (766)
Q Consensus 720 d~~~~IGSaNld~RS~~~n~d~E~~v~i~~p-~~~ 753 (766)
++++++||+||+.+|+. .|.|+++.+.++ +++
T Consensus 102 ~~~~~iGS~N~~~~~~~--~n~E~~~~i~~~~~l~ 134 (155)
T 1byr_A 102 NVTVETGSFNFTKAAET--KNSENAVVIWNMPKLA 134 (155)
T ss_dssp TTEEEEESCCBSHHHHH--TSCEEEEEEESCHHHH
T ss_pred CCEEEEECCCCCccccc--cCcccEEEEcCcHHHH
Confidence 99999999999999997 459999999995 653
No 33
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.56 E-value=1.7e-14 Score=135.83 Aligned_cols=101 Identities=19% Similarity=0.289 Sum_probs=86.6
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC---Cee
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP---QAT 92 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~---~~~ 92 (766)
.+.|.|+|++|+ ++|..+. +||||+|.+. ...
T Consensus 25 ~~~L~V~v~~a~---~~d~~g~------------------------------------------sDPyv~v~l~~~~~~~ 59 (138)
T 1wfm_A 25 KAELFVTRLEAV---TSNHDGG------------------------------------------CDCYVQGSVANRTGSV 59 (138)
T ss_dssp TTEEEEEEEEEE---CCCCSSC------------------------------------------CCEEEEEEEEETTEEE
T ss_pred CCEEEEEEEEEE---cCCCCCC------------------------------------------cceEEEEEEEcCCCcc
Confidence 689999999999 3555554 9999999993 344
Q ss_pred eeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccC
Q 004233 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~ 161 (766)
..||+++++++||+|||+|.|.+... ...|.|+|||+|.++ +++||.+.++|.++..+.....|++|..
T Consensus 60 ~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 60 EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp EEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred cEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence 67999999999999999999998765 346999999999987 8999999999999986677889999954
No 34
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.55 E-value=1.3e-14 Score=136.82 Aligned_cols=104 Identities=25% Similarity=0.424 Sum_probs=88.4
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC----Ce
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~----~~ 91 (766)
.+.|.|+|++|++|+.++..+. +||||++.+. ..
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~ 57 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK 57 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC------------------------------------------CCEEEECCCSSCCSSS
T ss_pred CCEEEEEEEEccCCCCcCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence 5789999999999999887665 9999999982 24
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecC-C---CceEEEEEEEcCCCC---CceeEEEeccceeccCCceeEEEEEccCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAH-P---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~-~---~~~l~~~v~d~~~~~---~~~iG~~~~~l~~~~~~~~~~~~~~l~~~ 162 (766)
...||++++++.||+|||+|.|.+.. . ...|.|+|||++.++ +++||++.++|.++.... ...|++|...
T Consensus 58 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~ 134 (141)
T 1v27_A 58 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH 134 (141)
T ss_dssp SCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred cceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence 56799999999999999999999533 2 356999999999886 799999999999987544 7899999644
No 35
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.55 E-value=1.9e-14 Score=135.99 Aligned_cols=103 Identities=29% Similarity=0.480 Sum_probs=89.6
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---- 90 (766)
..+.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 64 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGL------------------------------------------ADPYVKLHLLPGASK 64 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSC------------------------------------------CCEEEEEEEESCCSG
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 56889999999999998886554 99999999954
Q ss_pred eeeeeeccccCCCCCeeeeeEEEe-ecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEc
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
....||++++++.||+|||+|.|. +... ...|.|+|||++.++ +++||++.++|.++..+.....|++|
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 138 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEEC
T ss_pred cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEec
Confidence 356799999999999999999998 5433 256999999999987 89999999999999988878888887
No 36
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.54 E-value=3.3e-14 Score=136.34 Aligned_cols=106 Identities=23% Similarity=0.404 Sum_probs=89.1
Q ss_pred eeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC---
Q 004233 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (766)
Q Consensus 14 ~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--- 90 (766)
...|.|.|+|++|++|+.++ .+. +||||++.+..
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d-~g~------------------------------------------~Dpyv~v~l~~~~~ 60 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQ-PGT------------------------------------------CDPYVKISLIPEDS 60 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCS-SSC------------------------------------------CCEEEEEEEESCSC
T ss_pred CCCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCEEEEEEEEcCCC
Confidence 35688999999999999877 344 99999999932
Q ss_pred -eeeeeeccccCCCCCeeeeeEEEeec--CCCceEEEEEEEcCCCC--CceeEEEeccceeccC-CceeEEEEEccCC
Q 004233 91 -ATVARTRVLKNSQEPVWNEHFNIPLA--HPLSNLEIQVKDDDVFG--AQIIGTAAIPAHTIAT-GELISRWYDIIAP 162 (766)
Q Consensus 91 -~~~~~T~~~~~~~~P~w~e~~~~~~~--~~~~~l~~~v~d~~~~~--~~~iG~~~~~l~~~~~-~~~~~~~~~l~~~ 162 (766)
..+.||++++++.||+|||+|.|.+. .....|.|+|||++.++ +++||++.++|.++.. +.....|++|...
T Consensus 61 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 61 RLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp CTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred CccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 34579999999999999999999984 33456999999999874 8999999999999984 6788899999654
No 37
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.53 E-value=3e-14 Score=133.66 Aligned_cols=92 Identities=27% Similarity=0.408 Sum_probs=80.1
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---- 90 (766)
..|.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 51 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGT------------------------------------------SDPYVKVWLMYKDKR 51 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTB------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCeEEEEEEEeeCCCCcCCCCC------------------------------------------cCeEEEEEEEeCCCc
Confidence 35889999999999998886655 99999999953
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEeccceecc
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~ 148 (766)
....+|++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||++.+++..+.
T Consensus 52 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 52 VEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred cceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 24679999999999999999999987665 46999999999987 899999999998753
No 38
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.53 E-value=4.5e-14 Score=132.82 Aligned_cols=105 Identities=29% Similarity=0.426 Sum_probs=87.7
Q ss_pred eceEEEEEEEEeeCCCCCCCc-chhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Ce
Q 004233 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA 91 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~~ 91 (766)
..+.|.|+|++|++|+.++.. +. +||||++.+. ..
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~~~~~~~ 57 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMT------------------------------------------SDPYIKMTILPEKK 57 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTB------------------------------------------CEEEEEEEEETTTC
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCC------------------------------------------CCCEEEEEEecCCC
Confidence 467899999999999988864 44 9999999994 24
Q ss_pred eeeeeccccCCCCCeeeeeEEEe-ecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCce-eEEEEEccC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-ISRWYDIIA 161 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~-~~~~~~l~~ 161 (766)
...||++++++.||+|||+|.|. +... ...|.|+|||+|.++ +++||++.++|.++..+.. ...|++|..
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 56799999999999999999996 6653 246999999999987 8999999999999986544 456788843
No 39
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=134.84 Aligned_cols=109 Identities=25% Similarity=0.445 Sum_probs=87.8
Q ss_pred ceEEEEEEEEeeCCCCC-CCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--ee
Q 004233 16 HGDLDLKIIRARRLPNM-DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~--~~ 92 (766)
.+.|.|+|++|++|+.+ +..+. +.....+||||+|.+.. ..
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~------------------------------------~~~~~~~dpyv~v~l~~~~~~ 68 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGS------------------------------------RQDMAHSNPYVKICLLPDQKN 68 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCS------------------------------------SCTTCCCCCEEEEEEETCCSS
T ss_pred CCEEEEEEEEEeCCCCccccccc------------------------------------cccCCCCCcEEEEEEEeCCCc
Confidence 67999999999999973 43220 00112399999999952 34
Q ss_pred eeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEcc
Q 004233 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (766)
Q Consensus 93 ~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~ 160 (766)
..||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|+|.++..+.....|+.|.
T Consensus 69 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 69 SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp CEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred ceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence 67999999999999999999998753 346999999999987 899999999999998766677898883
No 40
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.52 E-value=4.9e-14 Score=135.95 Aligned_cols=104 Identities=27% Similarity=0.445 Sum_probs=88.1
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---- 90 (766)
..|.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 60 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCce
Confidence 46899999999999999886655 99999999942
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceec------------cCCceeE
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI------------ATGELIS 154 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~------------~~~~~~~ 154 (766)
....||++++++.||+|||+|.|.+..+ ...|.|+|||+|.++ +++||.+.|++..+ ..+..+.
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~ 140 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEE
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeee
Confidence 2467999999999999999999998765 345999999999987 89999999999853 2355778
Q ss_pred EEEEcc
Q 004233 155 RWYDII 160 (766)
Q Consensus 155 ~~~~l~ 160 (766)
.|++|.
T Consensus 141 ~W~~L~ 146 (159)
T 1tjx_A 141 QWHTLQ 146 (159)
T ss_dssp EEEECB
T ss_pred eEEECc
Confidence 999984
No 41
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=134.23 Aligned_cols=104 Identities=22% Similarity=0.418 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----e
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~----~ 91 (766)
.+.|.|+|++|++|+.++..+ +||||+|.+.. .
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-------------------------------------------~dpyv~v~l~~~~~~~ 59 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-------------------------------------------SDPYVRMYLLPDKRRS 59 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-------------------------------------------CCEEEEEEEESCCCSS
T ss_pred CCEEEEEEEEeECCCCCCCCC-------------------------------------------CCeeEEEEEEcCCCCC
Confidence 688999999999999876422 89999999932 2
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC---CceeEEEeccceeccCCceeEEEEEccCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~---~~~iG~~~~~l~~~~~~~~~~~~~~l~~~ 162 (766)
...||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.++|..+..+.....|++|...
T Consensus 60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 457999999999999999999998653 346999999999874 36999999999999877778899999544
No 42
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.51 E-value=1e-13 Score=132.84 Aligned_cols=90 Identities=28% Similarity=0.424 Sum_probs=74.5
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEE--CCe-
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQA- 91 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~--~~~- 91 (766)
..+.|.|+|++|++|+.++..+. +||||+|.+ +..
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 65 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGL------------------------------------------SDPYVKVNLYHAKKR 65 (153)
T ss_dssp TTTEEEEEEEEEESCC------C------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------CCeEEEEEEEeCCeE
Confidence 46789999999999998886665 999999999 443
Q ss_pred -eeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEecccee
Q 004233 92 -TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHT 146 (766)
Q Consensus 92 -~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~ 146 (766)
...||++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||++.|++..
T Consensus 66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 2569999999999999999999988753 45999999999987 8999999999987
No 43
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.51 E-value=7.6e-14 Score=135.64 Aligned_cols=104 Identities=28% Similarity=0.426 Sum_probs=86.9
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---- 90 (766)
..+.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGY------------------------------------------SDPFVKLWLKPDMGK 72 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETC---
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 36889999999999998886655 99999999954
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEeccceecc------------CCceeE
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELIS 154 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~------------~~~~~~ 154 (766)
....||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|++..+. .+..+.
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~ 152 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 152 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEE
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcce
Confidence 3567999999999999999999998764 346999999999987 899999999998753 244566
Q ss_pred EEEEcc
Q 004233 155 RWYDII 160 (766)
Q Consensus 155 ~~~~l~ 160 (766)
.|+.|.
T Consensus 153 ~Wh~L~ 158 (166)
T 2cm5_A 153 RWHQLQ 158 (166)
T ss_dssp EEEECB
T ss_pred EeeECC
Confidence 666663
No 44
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.48 E-value=1.7e-13 Score=127.13 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=88.0
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeE
Q 004233 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS 154 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~ 154 (766)
+|||+++.+-+.+ .||++++ ++.||+|||.|.+++..+. ..|.|+|+|++.+. +++||++.++|.++..+....
T Consensus 37 ~Dp~akv~FRg~k-~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~ 115 (144)
T 3l9b_A 37 ADRIAKVTFRGQS-FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVE 115 (144)
T ss_dssp EEEEEEEEETTEE-EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEE
T ss_pred CCCeEEEEEeccc-eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEE
Confidence 9999999997755 5999998 7999999999999998753 45999999999987 999999999999998766777
Q ss_pred EEEEccCCCCCCCCCCceEEEEEEEEecC
Q 004233 155 RWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (766)
Q Consensus 155 ~~~~l~~~~~~~~~~~g~i~l~l~~~~~~ 183 (766)
.+..|++.+.++ ..++|.++|+|.|..
T Consensus 116 l~~~LvD~n~~~--~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 116 VSDTLIDDNNAI--IKTSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEECTTSCE--EEEEEEEEEEEEETT
T ss_pred EeecccCCCCCc--cccEEEEEEEecCCC
Confidence 788888887766 358999999999964
No 45
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.48 E-value=2e-13 Score=145.45 Aligned_cols=124 Identities=24% Similarity=0.401 Sum_probs=99.6
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Ceee
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV 93 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~~~~ 93 (766)
.+.|.|+|++|++|+.+|..+. +||||++.+. +...
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dPyv~v~l~~~~~~~ 56 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGF------------------------------------------SDPYVKIYLLPDRKKK 56 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSC------------------------------------------CCEEEEEECTTSTTSC
T ss_pred CCEEEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEcCCCee
Confidence 5889999999999999887665 9999999993 3455
Q ss_pred eeeccccCCCCCeeeeeEEEeecCC---CceEEEEEEEcCCCC-CceeEEEecc-ceecc-CCceeEEEEEccCCCCCCC
Q 004233 94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIP-AHTIA-TGELISRWYDIIAPSGSPP 167 (766)
Q Consensus 94 ~~T~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~~~iG~~~~~-l~~~~-~~~~~~~~~~l~~~~~~~~ 167 (766)
.||++++++.||+|||+|.|.+... ...|.|+|||.|.++ +++||++.++ +..+. .......|++|....+ ..
T Consensus 57 ~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~-~~ 135 (296)
T 1dqv_A 57 FQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGS-EK 135 (296)
T ss_dssp EECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSS-CC
T ss_pred EeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccc-cc
Confidence 7999999999999999999998654 346999999999987 8999999996 44443 2334567999854332 23
Q ss_pred CCCceEEEEEEEEec
Q 004233 168 KPGASIQLELKFTPC 182 (766)
Q Consensus 168 ~~~g~i~l~l~~~~~ 182 (766)
...|+|.+++.|.|.
T Consensus 136 ~~~G~i~vsl~y~~~ 150 (296)
T 1dqv_A 136 ADLGELNFSLCYLPT 150 (296)
T ss_dssp SCCCEEEEEEEEETT
T ss_pred cccceEEEEEEeccc
Confidence 457999999999764
No 46
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.46 E-value=2.3e-13 Score=126.99 Aligned_cols=96 Identities=21% Similarity=0.371 Sum_probs=68.2
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccCCc--eeEE
Q 004233 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISR 155 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~--~~~~ 155 (766)
+||||++.. + . .||++++ ++.||+|||+|.|.+......|.|+|||+| ++ +++||++.|+|.++.... ....
T Consensus 23 ~DPYv~v~~-~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~ 98 (131)
T 2cjt_A 23 FNTYVTLKV-Q-N-VKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGE 98 (131)
T ss_dssp CEEEEEEEE-T-T-EEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCE
T ss_pred cCeEEEEEe-c-C-EEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccc
Confidence 999999992 2 2 3566555 699999999999999987778999999999 65 899999999999986322 1224
Q ss_pred EEEcc----CCCCC----CCCCCceEEEEEEE
Q 004233 156 WYDII----APSGS----PPKPGASIQLELKF 179 (766)
Q Consensus 156 ~~~l~----~~~~~----~~~~~g~i~l~l~~ 179 (766)
|.++. .+.++ .....+.+.+.++|
T Consensus 99 ~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 99 WLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp EEECBC----------CCSCCCCCEEEEEEEE
T ss_pred cEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 55442 22221 11124558888877
No 47
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.39 E-value=2.4e-12 Score=146.93 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=90.9
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~ 95 (766)
.|.|.|+|++|++|+. |..+. +||||+|.+.++. .|
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~------------------------------------------sDPYV~v~l~~~~-~k 428 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTA------------------------------------------TDAYLKVFFGGQE-FR 428 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSC------------------------------------------CCEEEEEEETTEE-EE
T ss_pred ccEEEEEEEEccCCCc-ccCCC------------------------------------------cCeEEEEEECCEe-ee
Confidence 3799999999999998 87776 9999999998865 79
Q ss_pred eccccCCCCCeeeeeEEEeecC--CCceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCCCCCCCce
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS 172 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~--~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~ 172 (766)
|+++++++||+|||+|.|.+.. ....|+|+|||+|..+ +|+||++.++|. .| ....|+.| ..|+
T Consensus 429 Tkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l---------~~G~ 495 (540)
T 3nsj_A 429 TGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCEL---------NHGR 495 (540)
T ss_dssp CCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SE-EEEEEEEC---------SSSE
T ss_pred eeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEc---------CCeE
Confidence 9999999999999999998643 5567999999999987 799999999987 23 46678886 4688
Q ss_pred EEEEEE
Q 004233 173 IQLELK 178 (766)
Q Consensus 173 i~l~l~ 178 (766)
|.+++.
T Consensus 496 l~~~~~ 501 (540)
T 3nsj_A 496 VKFSYH 501 (540)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888876
No 48
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.38 E-value=1.7e-12 Score=148.72 Aligned_cols=116 Identities=21% Similarity=0.367 Sum_probs=99.1
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCeeeee
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~~~~ 95 (766)
.|.|.|+|++|++|+.+|..+. +||||++.++.. +.+
T Consensus 386 ~~~l~v~v~~a~~L~~~d~~~~------------------------------------------sdpyv~v~~~~~-~~~ 422 (510)
T 3jzy_A 386 IGRLMVHVIEATELKACKPNGK------------------------------------------SNPYCEISMGSQ-SYT 422 (510)
T ss_dssp CEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTE-EEE
T ss_pred CceEEEEeceeecCCCCCCCCC------------------------------------------CCeEEEEEECCe-ecc
Confidence 4789999999999999887665 999999999775 469
Q ss_pred eccccCCCCCeeeeeEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEeccceeccCCce----eEEEEEccCCCCCCCCC
Q 004233 96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL----ISRWYDIIAPSGSPPKP 169 (766)
Q Consensus 96 T~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~----~~~~~~l~~~~~~~~~~ 169 (766)
|++++++.||+|||+|.|.+..+. ..|.|+|||+|.++ +++||++.+++.++..+.. ...|+++.. ..
T Consensus 423 T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~------~~ 496 (510)
T 3jzy_A 423 TRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE------VP 496 (510)
T ss_dssp CCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBS------SS
T ss_pred CCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCC------CC
Confidence 999999999999999999997665 45999999999987 8999999999999975443 778999832 25
Q ss_pred CceEEEEEEEE
Q 004233 170 GASIQLELKFT 180 (766)
Q Consensus 170 ~g~i~l~l~~~ 180 (766)
.|+|.+++.+.
T Consensus 497 ~G~i~l~~~l~ 507 (510)
T 3jzy_A 497 TGEVWVRFDLQ 507 (510)
T ss_dssp SCEEEEEEEEE
T ss_pred CceEEEEEEEE
Confidence 68888887754
No 49
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.37 E-value=2.5e-12 Score=124.99 Aligned_cols=66 Identities=23% Similarity=0.417 Sum_probs=57.1
Q ss_pred CCcEEEEEECCeeeeeecccc-CCCCCeeeeeEEEeecCCCceEEEEEEEcCCCC-CceeEEEeccceeccC
Q 004233 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~ 149 (766)
+||||+|. .+ . .||++++ ++.||+|||+|.|.+......|.|+|||+| ++ |++||++.|+|.++..
T Consensus 32 ~DPYV~v~-~~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 32 FNTYVTLK-VQ-N-VESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp CEEEEEEE-ET-T-EEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEEEEEEGGGSCB
T ss_pred CCeEEEEE-ec-c-eEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEEEEEEHHHhcc
Confidence 99999999 22 2 4677766 699999999999999987778999999999 55 9999999999999863
No 50
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.35 E-value=3e-12 Score=149.21 Aligned_cols=120 Identities=24% Similarity=0.449 Sum_probs=100.0
Q ss_pred eceEEEEEEEEeeCCCCCCC--cchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--
Q 004233 15 LHGDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~-- 90 (766)
..+.|.|+|++|++|+.++. .+ .+||||+|.+.+
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~------------------------------------------~~DPYV~V~l~g~~ 532 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNS------------------------------------------IVDPKVIVEIHGVG 532 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSS------------------------------------------CCCEEEEEEEESSG
T ss_pred cceEEEEEEEEcCCCCcccccccC------------------------------------------CCCcEEEEEEecCC
Confidence 45899999999999998763 22 299999999943
Q ss_pred --eeeeeeccccCC-CCCeeeeeEEEeecCCC-ceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCCCCC
Q 004233 91 --ATVARTRVLKNS-QEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (766)
Q Consensus 91 --~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~~ 165 (766)
....||++++++ .||+|||+|.|.+..+. ..|.|+|||+|.++ +++||++.|||..+..|. +|++|....|.
T Consensus 533 ~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~ 609 (624)
T 1djx_A 533 RDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGD 609 (624)
T ss_dssp GGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSC
T ss_pred CCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcC
Confidence 345799999997 99999999999998775 45999999999986 999999999999998663 68999777665
Q ss_pred CCCCCceEEEEEEEE
Q 004233 166 PPKPGASIQLELKFT 180 (766)
Q Consensus 166 ~~~~~g~i~l~l~~~ 180 (766)
+. ..++|.+.+.|.
T Consensus 610 ~~-~~~~L~v~i~~~ 623 (624)
T 1djx_A 610 QH-PSATLFVKISIQ 623 (624)
T ss_dssp EE-EEEEEEEEEEEE
T ss_pred CC-CceEEEEEEEEE
Confidence 42 468898988875
No 51
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.34 E-value=1.3e-12 Score=132.90 Aligned_cols=139 Identities=16% Similarity=0.052 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCc
Q 004233 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (766)
Q Consensus 560 ~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~~ 639 (766)
....+.++++|++|+++|+|+. |+++. ..++.+|.+|++|| |+|+||++....... .
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~-Y~~~~-----------------~~I~~aL~~Aa~RG--V~VRii~D~~~~~~~--~- 113 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAI-YTFTS-----------------LFLADSIKRALQRG--VIIRIISDGEMVYSK--G- 113 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEC-SCBCC-----------------HHHHHHHHHHHHHT--CEEEEECCTTTTTST--T-
T ss_pred HHHHHHHHHHHHHhhhEEEEEE-EEeCC-----------------HHHHHHHHHHHHcC--CeEEEEEechhhhhh--H-
Confidence 3566789999999999999997 44421 35677788887755 999999985321110 0
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEEEe
Q 004233 640 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 719 (766)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IVD 719 (766)
. .+..+...|+.+ ..+.. ...+-.+.....+.. .........|.|++++|
T Consensus 114 ---------~--------~~~~~~~~~~~~------~~~~~--~~~~h~K~~viD~~~-----~~~~~~~~~H~K~~v~D 163 (220)
T 4gel_A 114 ---------S--------QISMLAQLGVPV------RVPIT--TNLMHNKFCIIDGFE-----RVEEIRLLRKLKFMRPC 163 (220)
T ss_dssp ---------C--------HHHHHHHTTCCE------EECCS--SSCBCCCEEEESCHH-----HHHHHHHHTTCSCCCCC
T ss_pred ---------H--------HHHHHHhcCCcE------Eeecc--cccccceeEEEcchh-----cccccccccceeccccc
Confidence 0 034455666543 01100 000000000000000 00001124566666666
Q ss_pred eeEeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 720 DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 720 d~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
++++++||+||+.+|+.. |.|.++++.+++++
T Consensus 164 ~~~v~~GS~N~t~~s~~~--N~E~~~vi~~~~~a 195 (220)
T 4gel_A 164 YSIVISGSVNWTALGLGG--NWENCIITADDKLT 195 (220)
T ss_dssp CCEEEEESCCBSHHHHHT--SBEEEEEECCHHHH
T ss_pred cceEEecCcccccccccc--CceEEEEEECHHHH
Confidence 789999999999999984 59999999999764
No 52
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.29 E-value=4e-13 Score=152.52 Aligned_cols=128 Identities=25% Similarity=0.426 Sum_probs=26.3
Q ss_pred EeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECCee
Q 004233 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (766)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~~~ 92 (766)
....|.|+|+|++|++|+++ .||||++.++++.
T Consensus 7 ~r~~~~L~V~VieAk~L~~~-----------------------------------------------ddpYv~v~l~~~~ 39 (483)
T 3bxj_A 7 RRVDNVLKLWIIEARELPPK-----------------------------------------------KRYYCELCLDDML 39 (483)
T ss_dssp EEEEECC-------------------------------------------------------------------------
T ss_pred ceeccEEEEEEEEcCCcCCC-----------------------------------------------CCCeEEEEECCeE
Confidence 34568999999999999842 3899999998876
Q ss_pred eeeeccccCC---CCCeeeeeEEEeecCCCceEEEEEEEc-CC---C-CCceeEEEeccceeccCCceeEEEEEccCCCC
Q 004233 93 VARTRVLKNS---QEPVWNEHFNIPLAHPLSNLEIQVKDD-DV---F-GAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (766)
Q Consensus 93 ~~~T~~~~~~---~~P~w~e~~~~~~~~~~~~l~~~v~d~-~~---~-~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~ 164 (766)
..||+++++| .||+|||+|.|.+......|.|+|||+ |. . ++++||.+.|++.++..+...+.|++|..+.+
T Consensus 40 ~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~ 119 (483)
T 3bxj_A 40 YARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTG 119 (483)
T ss_dssp -------------------CCEECC------------------------------------------CCEECC-------
T ss_pred EeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCC
Confidence 7899999999 999999999999766566799999994 42 3 48999999999999998888899999964432
Q ss_pred C---------------------CCCCCceEEEEEEEEecCCCCc
Q 004233 165 S---------------------PPKPGASIQLELKFTPCDKNPL 187 (766)
Q Consensus 165 ~---------------------~~~~~g~i~l~l~~~~~~~~p~ 187 (766)
. ..+..|+|+|+++|.+....|.
T Consensus 120 ~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~vlP~ 163 (483)
T 3bxj_A 120 SGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPM 163 (483)
T ss_dssp -------------------------------CEEEEEECCBCCG
T ss_pred ccccccccccccccccccccccCCCCCceEEEEEEeeeeeeccH
Confidence 1 1134689999999998765554
No 53
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.29 E-value=1e-11 Score=131.12 Aligned_cols=103 Identities=26% Similarity=0.448 Sum_probs=86.8
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--Ce--
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA-- 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~~-- 91 (766)
.+.|.|+|++|++|+.+|..+. +||||++.+. +.
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 186 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKRL 186 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEEE
T ss_pred CCceEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEeCCcEe
Confidence 5789999999999998886665 9999999983 22
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEeccceecc------------CCceeEE
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELISR 155 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~------------~~~~~~~ 155 (766)
.+.||++++++.||+|||+|.|.+..+. ..|.|+|||+|.++ +++||++.+++..+. .+..+.+
T Consensus 187 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~ 266 (284)
T 2r83_A 187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ 266 (284)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEE
T ss_pred eeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchhe
Confidence 4679999999999999999999997763 35999999999987 899999999997632 3456788
Q ss_pred EEEcc
Q 004233 156 WYDII 160 (766)
Q Consensus 156 ~~~l~ 160 (766)
|++|.
T Consensus 267 W~~L~ 271 (284)
T 2r83_A 267 WHTLQ 271 (284)
T ss_dssp EEECB
T ss_pred eeecC
Confidence 99984
No 54
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.28 E-value=6.7e-12 Score=147.47 Aligned_cols=102 Identities=27% Similarity=0.472 Sum_probs=91.0
Q ss_pred ceEEEEEEEEeeCCCC---CCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC--
Q 004233 16 HGDLDLKIIRARRLPN---MDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~-- 90 (766)
.|.|.|+|++|++|+. +|..+. +||||+|.+..
T Consensus 17 ~g~L~V~Vi~A~nL~~~~~~D~~g~------------------------------------------sDPYV~V~l~~~~ 54 (749)
T 1cjy_A 17 SHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTTP 54 (749)
T ss_dssp CEEEEEEEEEEECCCSCHHHHHHCC------------------------------------------CCEEEEEECTTST
T ss_pred ccEEEEEEEEEECCCCccccCCCCC------------------------------------------cCeEEEEEEecCC
Confidence 4899999999999998 665554 99999999974
Q ss_pred eeeeeeccccCCCCCeeeeeEEEeecCC-CceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEc
Q 004233 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (766)
Q Consensus 91 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l 159 (766)
..+.||+++++++||+|||+|.|.+..+ ...|+|+|||+|.+++++||++.++|.++..+.....|++|
T Consensus 55 ~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L 124 (749)
T 1cjy_A 55 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 124 (749)
T ss_dssp TCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEE
T ss_pred CCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEec
Confidence 3567999999999999999999999874 45699999999998899999999999999888888899999
No 55
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.22 E-value=2.8e-11 Score=135.91 Aligned_cols=148 Identities=18% Similarity=-0.001 Sum_probs=103.3
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccC
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~ 320 (766)
......++++|.+|+++|+|++.+|.|+ ..+.++|+.|++|||+|+||+ ++..+.........
T Consensus 257 ~~i~~~~~~lI~~A~~~I~I~tpYf~p~----------------~~~~~aL~~Aa~rGV~VrIi~-~~~~and~y~~~~~ 319 (458)
T 3hsi_A 257 NELNQVIEDLFLQVQKKLVICTPYFNFP----------------RTLQHKIATLLENGKRVEIIV-GDKVANDFYIPPEQ 319 (458)
T ss_dssp CHHHHHHHHHHHTCSSEEEEECSSSCCC----------------HHHHHHHHHHHTTTCEEEEEE-ECGGGSTTCCCTTS
T ss_pred hHHHHHHHHHHHhcccEEEEEEeccCCC----------------HHHHHHHHHHHHCCCeEEEEE-CCccccCCccCCcc
Confidence 4567899999999999999999888875 689999999999999999998 77633221000011
Q ss_pred CccccCcH-HHH-----------hhhcCCC-ceEEecccCCCcccchhhhccccceecccceEEEEccCCCCCCcceEEE
Q 004233 321 GVMATHDE-ETK-----------KFFKHSS-VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (766)
Q Consensus 321 ~~~~~~~~-~~~-----------~~l~~~g-i~v~~~~~~~~~~~~~~~~~~~~~~~r~H~K~~VVD~~~~~~~~~~~a~ 387 (766)
.++..... ... +.|..+| +.+..+... ....|.|++|||++ +++
T Consensus 320 ~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~~~~---------------~~~lHaK~~vvD~~--------~~~ 376 (458)
T 3hsi_A 320 PFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLWRDG---------------DNTYHLKGVWVDDR--------YIL 376 (458)
T ss_dssp CCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEECBT---------------TBEECCCEEEETTT--------EEE
T ss_pred hhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEEecC---------------CCceeEEEEEECCe--------EEE
Confidence 11111010 111 2344456 444433211 12389999999998 999
Q ss_pred EccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh---HHHHHHHHHHHHHhhhc
Q 004233 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP---AAYDVLINFEQRWRKAT 460 (766)
Q Consensus 388 vGG~Ni~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gp---av~dl~~~F~~~W~~~~ 460 (766)
|||.|++. |.. .-..++.+.|.++ .+.++...|.++|..+.
T Consensus 377 vGS~N~d~-RS~-------------------------------~lN~E~~~~i~~~~~~l~~~l~~~f~~~~~~s~ 420 (458)
T 3hsi_A 377 LTGNNLNP-RAW-------------------------------RLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTK 420 (458)
T ss_dssp EECCCCSH-HHH-------------------------------HTCEEEEEEEECTTCSSHHHHHHHHHHHHTTEE
T ss_pred ecCCCCCc-chh-------------------------------hhCceeEEEEeCCcHHHHHHHHHHHHHHHHhCe
Confidence 99999998 431 1224789999998 79999999999997654
No 56
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.21 E-value=5.3e-12 Score=134.40 Aligned_cols=91 Identities=31% Similarity=0.456 Sum_probs=79.5
Q ss_pred ceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC--C--e
Q 004233 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (766)
Q Consensus 16 ~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--~--~ 91 (766)
.|.|.|+|++|++|+.+|..+. +||||++.+. + .
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~ 188 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF------------------------------------------SDPYVKASLISEGRRL 188 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEECCCTTCCTT
T ss_pred cceeEEEEEEeecCCccCCCCC------------------------------------------CCcEEEEEEEeCCcCc
Confidence 5899999999999999887665 8999999995 2 2
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCC---ceEEEEEEEcCCCC-CceeEEEeccceecc
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~ 148 (766)
.+.||++++++.||+|||+|.|.+..+. ..|.|+|||++.++ +++||.+.|++..+.
T Consensus 189 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 189 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 249 (296)
T ss_dssp SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred cceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCC
Confidence 4579999999999999999999987753 35999999999997 899999999998764
No 57
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.18 E-value=3.5e-11 Score=140.38 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=86.3
Q ss_pred HHHHHHHHhccc-----eEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCC
Q 004233 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (766)
Q Consensus 564 ~a~~~lI~~Ak~-----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~ 638 (766)
..++++|++|++ +|+| ++||+.. +. .++.+|++|++ +||+|+||++..+. .+.
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~-----d~-----------~I~~AL~~AA~--rGV~VrVLvd~~a~--~~~- 407 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVAK-----DS-----------RIIDSMIHAAH--NGKKVTVVVELQAR--FDE- 407 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCCT-----TC-----------HHHHHHHHHHH--TTCEEEEEECTTCS--STT-
T ss_pred hhHHHHHHHHhhCCcceEEEE-EeeeecC-----cH-----------HHHHHHHHHHh--cCCEEEEEECCCcc--cch-
Confidence 578899999997 9999 8999832 21 45667777766 55999999996431 111
Q ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEEE
Q 004233 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (766)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IV 718 (766)
.+... ..+.|.++|++| + +| . ....+|+|++||
T Consensus 408 -------~~n~~-------~~~~L~~aGV~V----~--~~-~--------------------------~~~k~H~Ki~VI 440 (687)
T 1xdp_A 408 -------EANIH-------WAKRLTEAGVHV----I--FS-A--------------------------PGLKIHAKLFLI 440 (687)
T ss_dssp -------TTTTT-------TTHHHHHHTCEE----E--EC-C--------------------------TTCEECCEEEEE
T ss_pred -------hhHHH-------HHHHHHHCCCEE----E--Ee-c--------------------------CCccccceEEEE
Confidence 11111 157788999975 1 11 1 123599999999
Q ss_pred ee----eE---eEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 719 DD----EY---VIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 719 Dd----~~---~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
|+ ++ ++|||+|+|.||+. .++|+++.+.+|+++
T Consensus 441 D~re~~~i~~~a~iGS~N~d~rs~~--~n~D~~l~i~~~~i~ 480 (687)
T 1xdp_A 441 SRKENGEVVRYAHIGTGNFNEKTAR--LYTDYSLLTADARIT 480 (687)
T ss_dssp EEEETTEEEEEEEEESSCSCTTGGG--TEEEEEEEECCHHHH
T ss_pred EeccCCeEEEEEEEeCCcCCcchhh--hcceEEEEEeCHHHH
Confidence 95 44 99999999999997 569999999999753
No 58
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=99.01 E-value=5.8e-10 Score=127.50 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=92.1
Q ss_pred chHHHHHHHHHhccceEEEEEe----ecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEecCCCccCcccc
Q 004233 242 TCWEDICHAISEAHHLIYIVGW----SVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317 (766)
Q Consensus 242 ~~f~~l~~~I~~A~~~I~I~~~----~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~ 317 (766)
.....++++|.+|+++|+|++. +|.|.. -....+.++|+.|++|||+||||+ +....... .
T Consensus 314 ~~~~~~~~~I~~A~~~I~I~tq~~~pyf~p~~------------~~~~~i~~aL~~Aa~rGV~VrIl~-~~~~~~~~--~ 378 (506)
T 1v0w_A 314 PEESALRALVASAKGHIEISQQDLNATCPPLP------------RYDIRLYDALAAKMAAGVKVRIVV-SDPANRGA--V 378 (506)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCSSCCTTTSC------------SCCHHHHHHHHHHHHTTCEEEEEE-CCGGGCC----
T ss_pred cHHHHHHHHHhCcCcEEEEEeccccccccCcc------------cchHHHHHHHHHHHhCCCcEEEEe-CCCCchHH--H
Confidence 4678999999999999999973 333310 001599999999999999999998 65421110 0
Q ss_pred ccCCccccCcHHHHh---------hhcCCC-----------ceEEeccc---CCCcccchhhhccccceecccceEEEEc
Q 004233 318 KTPGVMATHDEETKK---------FFKHSS-----------VNCVLAPR---YASSKLSYFKQQIVGTIFTHHQKCVLVD 374 (766)
Q Consensus 318 ~~~~~~~~~~~~~~~---------~l~~~g-----------i~v~~~~~---~~~~~~~~~~~~~~~~~~r~H~K~~VVD 374 (766)
...++... .+..+ .+..+| +++..... +... .+....+|.|++|||
T Consensus 379 ~~a~~~~~--~~L~~~~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~~~~~---------~~~~~~lHaK~~vvD 447 (506)
T 1v0w_A 379 GSGGYSQI--KSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKWA---------DGHPYAQHHKLVSVD 447 (506)
T ss_dssp ----CCCC--SCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSSSSCT---------TSCCCCBCCEEEEET
T ss_pred HHhHHHHH--HHHHHhhhhhcccchhcccccchhccccccceeeeeccccCccccc---------cCccccceEEEEEEC
Confidence 00011000 00000 010111 23321100 0000 000224899999999
Q ss_pred cCCCCCCcceEEEEccccCCCcccCCCCCCCccCCCccccCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHH
Q 004233 375 TQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFE 453 (766)
Q Consensus 375 ~~~~~~~~~~~a~vGG~Ni~~~r~d~~~H~l~~~~~~~~~~~~~n~~~~~~~~~~~~~w~D~~v~v~Gp-av~dl~~~F~ 453 (766)
++ ++++||+|++. |. ++++.+.|++| .+.++...|.
T Consensus 448 ~~--------~~~vGS~N~d~-rS----------------------------------~~E~~l~i~~~~~a~~l~~~f~ 484 (506)
T 1v0w_A 448 SS--------TFYIGSKNLYP-SW----------------------------------LQDFGYIVESPEAAKQLDAKLL 484 (506)
T ss_dssp TT--------EEEEESCCSSC-CC----------------------------------SBCEEEEEECHHHHHHHHHHTH
T ss_pred Cc--------EEEEeCCCCCC-cc----------------------------------hhhceeEecCHHHHHHHHHHHH
Confidence 99 99999999966 32 24889999998 5788999999
Q ss_pred HH-Hhhhc
Q 004233 454 QR-WRKAT 460 (766)
Q Consensus 454 ~~-W~~~~ 460 (766)
++ |+...
T Consensus 485 ~~~w~~s~ 492 (506)
T 1v0w_A 485 DPQWKYSQ 492 (506)
T ss_dssp HHHHHHHG
T ss_pred HHHHhhcc
Confidence 75 87543
No 59
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.99 E-value=1.1e-09 Score=129.46 Aligned_cols=107 Identities=22% Similarity=0.408 Sum_probs=91.6
Q ss_pred EeeceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEEC---
Q 004233 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--- 89 (766)
Q Consensus 13 ~~~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~--- 89 (766)
.+..+.|.|+|++|++|+.+|..+. +||||++.+.
T Consensus 168 ~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDPyvkv~l~p~~ 205 (674)
T 3pfq_A 168 HIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDP 205 (674)
T ss_dssp EECSSEEEEEEEEEESCCCCSTTSS------------------------------------------CCEEEEEEEESCS
T ss_pred eeccceeeeeeecccccCCCCcccc------------------------------------------cCcccccccccCc
Confidence 4567899999999999999987765 9999999992
Q ss_pred -CeeeeeeccccCCCCCeeeeeEEEeecCC--CceEEEEEEEcCCCC-CceeEEEeccceeccCCceeEEEEEccCC
Q 004233 90 -QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (766)
Q Consensus 90 -~~~~~~T~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~~~~l~~~ 162 (766)
...+.+|+++++++||+|||+|.|.+... ...|.|+|||+|.++ +++||.+.++++++.... ...|+.++..
T Consensus 206 ~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 206 KSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp SCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred cccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeeccc
Confidence 23457999999999999999999998754 345999999999998 999999999999998543 5899999654
No 60
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=98.95 E-value=1.8e-09 Score=128.81 Aligned_cols=96 Identities=22% Similarity=0.383 Sum_probs=77.0
Q ss_pred CCcEEEEEECC-----eeeeeeccccC-CCCCeeee-eEEEe-ecCCC-ceEEEEEEEcCCCCCceeEEEeccceeccCC
Q 004233 80 SDPYVTVVVPQ-----ATVARTRVLKN-SQEPVWNE-HFNIP-LAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATG 150 (766)
Q Consensus 80 ~dpyv~~~~~~-----~~~~~T~~~~~-~~~P~w~e-~~~~~-~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~ 150 (766)
+||||+|++.+ ..+.||+++++ +.||+||| +|.|. +..+. ..|+|+|||+| +++||++.|||..|..|
T Consensus 742 ~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~G 818 (885)
T 3ohm_B 742 VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSG 818 (885)
T ss_dssp CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCE
T ss_pred CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCC
Confidence 89999999943 23469999976 69999999 69998 76554 45999999987 89999999999999876
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEEec
Q 004233 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (766)
Q Consensus 151 ~~~~~~~~l~~~~~~~~~~~g~i~l~l~~~~~ 182 (766)
. ++++|....|.+ ...|+|.+.+.+...
T Consensus 819 y---R~vpL~~~~g~~-l~~atLfv~i~~~~~ 846 (885)
T 3ohm_B 819 Y---HYVCLRNEANQP-LCLPALLIYTEASDY 846 (885)
T ss_dssp E---EEEEEECTTSCE-EEEEEEEEEEEEEEC
T ss_pred c---eEEEecCCCCCc-cCceEEEEEEEEEec
Confidence 4 457887766654 246889999988764
No 61
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=98.95 E-value=3.1e-09 Score=126.25 Aligned_cols=115 Identities=23% Similarity=0.394 Sum_probs=91.9
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---- 90 (766)
..+.|.|+|++|++|+.+ . +||||+|++.+
T Consensus 648 ~~~~L~V~Visaq~L~~~----~------------------------------------------~DPYV~V~l~g~p~d 681 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSDK----Q------------------------------------------ISSYVEVEMYGLPTD 681 (816)
T ss_dssp CCEEEEEEEEEEECCCSS----C------------------------------------------CCEEEEEEEESSGGG
T ss_pred cceEEEEEEEEcccCCCC----C------------------------------------------CCCeEEEEEeCCCcc
Confidence 357899999999999842 1 89999999943
Q ss_pred e--eeeeeccccC-CCCCeeeee-EEEe-ecCCC-ceEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCCC
Q 004233 91 A--TVARTRVLKN-SQEPVWNEH-FNIP-LAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (766)
Q Consensus 91 ~--~~~~T~~~~~-~~~P~w~e~-~~~~-~~~~~-~~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~ 164 (766)
. ...||+++++ +.||+|||+ |.|. +..+. ..|+|+|||++ +++||++.+||+.|..|. ++++|....|
T Consensus 682 ~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g 755 (816)
T 3qr0_A 682 TVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESN 755 (816)
T ss_dssp CEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEE---EEEEEECTTS
T ss_pred cccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCC
Confidence 1 4569999886 699999998 9998 76664 35999999985 799999999999998764 4688877766
Q ss_pred CCCCCCceEEEEEEEEec
Q 004233 165 SPPKPGASIQLELKFTPC 182 (766)
Q Consensus 165 ~~~~~~g~i~l~l~~~~~ 182 (766)
.+ -..++|.+.+.+...
T Consensus 756 ~~-~~~atLfv~i~~~~~ 772 (816)
T 3qr0_A 756 RP-LGLASVFAHIVAKDY 772 (816)
T ss_dssp CE-EEEEEEEEEEEEEEC
T ss_pred CC-CCceEEEEEEEEEec
Confidence 54 235788888887654
No 62
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.93 E-value=3.1e-09 Score=126.75 Aligned_cols=113 Identities=21% Similarity=0.355 Sum_probs=89.5
Q ss_pred eceEEEEEEEEeeCCCCCCCcchhhhccccccccCCCCCCCCccccCCcCcccccccccccCCCCCCcEEEEEECC----
Q 004233 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (766)
Q Consensus 15 ~~~~l~v~i~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~~~~~~---- 90 (766)
..|.|.|+|++|++|+.. . +||||+|++.+
T Consensus 676 ~~~~L~V~Visa~~L~~~----~------------------------------------------~DPYV~V~l~g~p~d 709 (799)
T 2zkm_X 676 VATTLSITVISGQFLSER----S------------------------------------------VRTYVEVELFGLPGD 709 (799)
T ss_dssp TCEEEEEEEEEEESCCSS----C------------------------------------------CCEEEEEEEECCTTS
T ss_pred eeeeEEEEEEeccccCcc----C------------------------------------------CCcEEEEEEEecCCC
Confidence 458999999999999842 1 89999999932
Q ss_pred -eeeeeec-cccC-CCCCeeee-eEEE-eecCCCc-eEEEEEEEcCCCCCceeEEEeccceeccCCceeEEEEEccCCCC
Q 004233 91 -ATVARTR-VLKN-SQEPVWNE-HFNI-PLAHPLS-NLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (766)
Q Consensus 91 -~~~~~T~-~~~~-~~~P~w~e-~~~~-~~~~~~~-~l~~~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~~~~l~~~~~ 164 (766)
..+.||+ ++++ +.||+||| +|.| .+..+.. .|.|.|||+| +++||++.|||+.|..|. +|++|....|
T Consensus 710 ~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g 783 (799)
T 2zkm_X 710 PKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESN 783 (799)
T ss_dssp CCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTC
T ss_pred cccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCCc---EEEeccCCCC
Confidence 1346999 7764 79999999 6999 7876654 5999999987 799999999999998663 5788876666
Q ss_pred CCCCCCceEEEEEEEE
Q 004233 165 SPPKPGASIQLELKFT 180 (766)
Q Consensus 165 ~~~~~~g~i~l~l~~~ 180 (766)
.+. ..++|.+.+.+.
T Consensus 784 ~~~-~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 784 MPL-TMPALFIFLEMK 798 (799)
T ss_dssp CEE-EEEEEEEEEEEE
T ss_pred CCC-CceEEEEEEEEE
Confidence 542 357888888764
No 63
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.81 E-value=6e-08 Score=87.34 Aligned_cols=89 Identities=16% Similarity=0.352 Sum_probs=74.8
Q ss_pred CCcEEEEEECCeeee---ee-ccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCCCceeEEEeccceecc-----CC
Q 004233 80 SDPYVTVVVPQATVA---RT-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (766)
Q Consensus 80 ~dpyv~~~~~~~~~~---~T-~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~-----~~ 150 (766)
.||||.|.++..... +| ...++|..|+|||+|.-.+.. ...|.|.|++... +++..+.+++.+|. .+
T Consensus 27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~ 102 (126)
T 1yrk_A 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN 102 (126)
T ss_dssp CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 999999999765544 76 777789999999999998755 4589999997655 99999999999998 34
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEE
Q 004233 151 ELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (766)
Q Consensus 151 ~~~~~~~~l~~~~~~~~~~~g~i~l~l~~~ 180 (766)
...+.|++| ++.|+|++.++|.
T Consensus 103 g~~e~WvdL--------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 103 GKAEFWLDL--------QPQAKVLMSVQYF 124 (126)
T ss_dssp TEEEEEEEC--------BSSCEEEEEEEEE
T ss_pred CceEEEEec--------ccCcEEEEEEEEe
Confidence 567889999 5689999999886
No 64
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.76 E-value=3.9e-08 Score=89.69 Aligned_cols=90 Identities=19% Similarity=0.409 Sum_probs=75.6
Q ss_pred CCcEEEEEECCeee---eee-ccccCCCCCeeeeeEEEeecCCCceEEEEEEEcCCCCCceeEEEeccceecc-----CC
Q 004233 80 SDPYVTVVVPQATV---ART-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (766)
Q Consensus 80 ~dpyv~~~~~~~~~---~~T-~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~~~l~~~~-----~~ 150 (766)
.||||.|.++.... ++| ...++|..|+|||+|.-.+.. ...|.|.|++... +||..+.+++.+|. .+
T Consensus 32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~ 107 (138)
T 2enj_A 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN 107 (138)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 99999999977544 788 777789999999999988755 4589999996544 99999999999998 34
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEEe
Q 004233 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (766)
Q Consensus 151 ~~~~~~~~l~~~~~~~~~~~g~i~l~l~~~~ 181 (766)
...+.|++| ++.|+|++.++|.-
T Consensus 108 g~~e~WvdL--------eP~Gkl~v~i~~~~ 130 (138)
T 2enj_A 108 GKTEIWLEL--------KPQGRMLMNARYFL 130 (138)
T ss_dssp TCEEEEEEC--------BSSCEEEEEEEECC
T ss_pred CceEEEEec--------ccCcEEEEEEEEEE
Confidence 567889999 56899999999963
No 65
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=98.42 E-value=5.1e-07 Score=104.76 Aligned_cols=120 Identities=12% Similarity=0.159 Sum_probs=86.3
Q ss_pred HHHHHHHHHhccc-----eEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCC
Q 004233 563 QTAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKT 637 (766)
Q Consensus 563 ~~a~~~lI~~Ak~-----~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~ 637 (766)
...++++|++|++ +|.++ .|.++. + ..++.+|++|+++| |+|+||+...+ ..+.
T Consensus 354 f~~vi~~I~~A~~DP~V~sIk~t-lYr~~~-----d-----------s~Iv~ALi~AA~rG--v~V~vLvel~a--rfde 412 (705)
T 2o8r_A 354 YDYVVRLLMEAAISPDVSEIRLT-QYRVAE-----N-----------SSIISALEAAAQSG--KKVSVFVELKA--RFDE 412 (705)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEE-ESCCCS-----C-----------CHHHHHHHHHHHTT--CEEEEEECCCS--CC--
T ss_pred HHHHHHHHHHhccCCCceEEEEE-EEEEcC-----C-----------HHHHHHHHHHHHCC--CEEEEEEeCCC--Ccch
Confidence 4689999999999 99976 455532 1 25677788887755 99999999421 1111
Q ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEE
Q 004233 638 NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 717 (766)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~I 717 (766)
.+ .. ...+.|.++|++| +|.+ .....|+|++|
T Consensus 413 e~--------ni-------~wa~~Le~aGv~V-------v~g~--------------------------~~lk~H~Ki~l 444 (705)
T 2o8r_A 413 EN--------NL-------RLSERMRRSGIRI-------VYSM--------------------------PGLKVHAKTAL 444 (705)
T ss_dssp ----------CH-------HHHHHHHHHTCEE-------EECC--------------------------TTCCBCCCEEE
T ss_pred hh--------hH-------HHHHHHHHCCCEE-------EEcc--------------------------CCCCceeEEEE
Confidence 00 01 1267789999986 3422 12468999999
Q ss_pred Eeee---------EeEEccCCcCcccCCCCCcccceeeeeCCcch
Q 004233 718 VDDE---------YVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 753 (766)
Q Consensus 718 VDd~---------~~~IGSaNld~RS~~~n~d~E~~v~i~~p~~~ 753 (766)
||++ ++.+|+.||++.++.. -+++++++.+|+++
T Consensus 445 Idrr~~~~g~~~~y~~igtGN~n~~tari--y~D~~l~t~~~~i~ 487 (705)
T 2o8r_A 445 ILYHTPAGERPQGIALLSTGNFNETTARI--YSDTTLMTANTDIV 487 (705)
T ss_dssp EEECCCSSSCCCEEEEEESSCSSCCCSSC--EEEEEEEECCHHHH
T ss_pred EecccccCCceeEEEeccccceeeeEEEE--EeeeeeeecChHHH
Confidence 9998 5789999999999974 49999999999763
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=97.10 E-value=0.00022 Score=76.93 Aligned_cols=110 Identities=9% Similarity=0.018 Sum_probs=71.8
Q ss_pred hhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCC
Q 004233 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (766)
Q Consensus 559 ~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~~~~g~~d~~ 638 (766)
...|...+.++|.+|++.|++..++.. ...+...+.++++ |||+|++|++.. ++..
T Consensus 117 ~~~I~~ri~eli~~A~~eI~i~~~~~~------------------l~~l~~~L~~a~~--RGV~Vrvi~~~~----~d~a 172 (342)
T 3qph_A 117 FDEAIEMFRESLYSAKNEVIVVTPSEF------------------FETIREDLIKTLE--RGVTVSLYIDKI----PDLS 172 (342)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECHHH------------------HHHHHHHHHHHHH--TTCEEEEEESSC----CCCG
T ss_pred HHHHHHHHHHHHHhhheEEEEEeCHHH------------------HHHHHHHHHHHHh--CCCEEEEEECCC----CChh
Confidence 367899999999999999999876533 1123344555544 569999999853 2211
Q ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHcccCCCccCeEEEeecCCccCCccccccCCCCCccccccCCccceEEeeeEEEE
Q 004233 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 718 (766)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HsK~~IV 718 (766)
. + . +. ....++++ + . .+.+ ++|+
T Consensus 173 ~------~---~--------~~-~~~~~vR~--------~--------------------------~-~~p~----l~iv 195 (342)
T 3qph_A 173 E------F---K--------GK-GNFFVRQF--------Y--------------------------K-LNHL----IGMT 195 (342)
T ss_dssp G------G---S--------SS-SEEEEEEC--------S--------------------------C-CCSE----EEEE
T ss_pred h------h---h--------cc-ccceEEEE--------c--------------------------C-CCcE----EEEE
Confidence 0 0 0 00 11122221 1 0 1223 5999
Q ss_pred eeeEeEEccCCc-C---cccCCCCCcccceeeeeCCcc
Q 004233 719 DDEYVIMGSANI-N---QRSMAGSKDTEIAMGSYQPHH 752 (766)
Q Consensus 719 Dd~~~~IGSaNl-d---~RS~~~n~d~E~~v~i~~p~~ 752 (766)
|++++++|++|+ + .||+.. ++| ++++.++.+
T Consensus 196 D~~~alv~~~~~~~~~~~rS~~~--~~e-aliv~~~~l 230 (342)
T 3qph_A 196 DGKEVVTIQNATFDSIGPPSFKS--TYP-EIIFSQYSL 230 (342)
T ss_dssp TTTEEEEECSSSCCSSCCCEEEE--CCH-HHHHHHHHH
T ss_pred ECCEEEEeccccccccccccccc--ccc-EEEEECHHH
Confidence 999999999998 4 499974 488 999988876
No 67
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=96.37 E-value=0.0034 Score=67.48 Aligned_cols=48 Identities=27% Similarity=0.202 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEE
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv 305 (766)
+.....+.++|.+|+++|++..|.-. -..+.++|.+|++|||+|++|+
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~~~-----------------l~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPSEF-----------------FETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECHHH-----------------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhhheEEEEEeCHHH-----------------HHHHHHHHHHHHhCCCEEEEEE
Confidence 66788999999999999999875311 1578899999999999999997
No 68
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=95.38 E-value=0.052 Score=54.88 Aligned_cols=49 Identities=24% Similarity=0.108 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHhccceEEEEEeecccceeEeecCCCCCCCCCcCcHHHHHHHHHhcCCEEEEEEe
Q 004233 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVW 306 (766)
Q Consensus 241 ~~~f~~l~~~I~~A~~~I~I~~~~~~~~~~l~r~~~~~~~~g~~~~l~~aL~~aa~rGV~VrILv~ 306 (766)
+.....+.++|++|+++|++..|. .. -..|.+.|.+|++|||.|+|+++
T Consensus 9 e~Ii~r~~e~I~~A~~el~lsi~~--e~---------------l~~l~~~L~~A~~rGV~V~liv~ 57 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVVTPS--EF---------------FETIREDLIKTLERGVTVSLYID 57 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECG--GG---------------HHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHHHHhhhEEEEEeCH--HH---------------HHHHHHHHHHHHHCCCEEEEEEc
Confidence 667889999999999999997662 21 16899999999999999999994
No 69
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=93.84 E-value=0.11 Score=51.78 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=34.6
Q ss_pred EEeeeEEEE---eeeEeEEccCCcCcccCCCCCcccceeeeeCCc
Q 004233 710 YVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 751 (766)
Q Consensus 710 ~~HsK~~IV---Dd~~~~IGSaNld~RS~~~n~d~E~~v~i~~p~ 751 (766)
.+|+|+... |...++|||.||+.--|. .|-|++|+++++.
T Consensus 103 i~HaK~Yg~~~n~g~~LIV~SgNfT~pGms--QNvE~sllld~~T 145 (358)
T 2c1l_A 103 ILHAKLYGTSNNLGESLVVSSGNFTGPGMS--QNIEASLLLDNNT 145 (358)
T ss_dssp CBCCEEEEEEETTEEEEEEESCCBSTTTTT--TSBEEEEEECHHH
T ss_pred ecchhhhcccCCCceEEEEecCCccccccc--cceeEEEEEcCCC
Confidence 689998776 577899999999999997 4599999999884
No 70
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=87.10 E-value=4.8 Score=39.80 Aligned_cols=40 Identities=10% Similarity=0.270 Sum_probs=33.0
Q ss_pred eeeeeccccCCCCCeeeeeEEEeecCCCc---eEEEEEEEcCC
Q 004233 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLS---NLEIQVKDDDV 131 (766)
Q Consensus 92 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~---~l~~~v~d~~~ 131 (766)
...+|.|...+.+|.|+|++.+.++.... -|.|++++...
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 44689999999999999999999988643 29999988654
No 71
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=84.94 E-value=5 Score=40.07 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=59.0
Q ss_pred cCcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEecccCCCcccchhhhccccce
Q 004233 284 DLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTI 363 (766)
Q Consensus 284 ~~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~ 363 (766)
+.++...+.+...+|++|.+++ -+..+.. ..+++..+++.+.|+++++.++..
T Consensus 50 gvrfy~~f~~h~~~Ggkv~~Il-GgstsQr-----------lTSKQavEElL~cGvev~IiNrkR--------------- 102 (358)
T 2c1l_A 50 GVRFYETFTEHINQGGRVIAIL-GGSTSQR-----------LSSRQVVEELLNRGVEVHIINRKR--------------- 102 (358)
T ss_dssp TTTTHHHHHHHHHTTCEEEEEE-ECCSSSC-----------CBBHHHHHHHHHTTCEEEEEECSS---------------
T ss_pred ceeecHHHHHHHhcCCcEEEEE-ccccccc-----------ccHHHHHHHHHhcCCceEEeeeee---------------
Confidence 4899999999999999999997 4332222 124678888999999998764321
Q ss_pred ecccceEEEEccCCCCCCcceEEEEccccCCC
Q 004233 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (766)
Q Consensus 364 ~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~ 395 (766)
-.|.|+...-.. +....+||+-|++.
T Consensus 103 -i~HaK~Yg~~~n-----~g~~LIV~SgNfT~ 128 (358)
T 2c1l_A 103 -ILHAKLYGTSNN-----LGESLVVSSGNFTG 128 (358)
T ss_dssp -CBCCEEEEEEET-----TEEEEEEESCCBST
T ss_pred -ecchhhhcccCC-----CceEEEEecCCccc
Confidence 169999988553 22388999999987
No 72
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=73.81 E-value=19 Score=33.61 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=67.2
Q ss_pred CCc--EEEEEECCeeeeeeccccCCCCCeeeeeEEEeecCCC--------ceEEEEEEEcCCCCCceeEEEeccceecc-
Q 004233 80 SDP--YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------SNLEIQVKDDDVFGAQIIGTAAIPAHTIA- 148 (766)
Q Consensus 80 ~dp--yv~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--------~~l~~~v~d~~~~~~~~iG~~~~~l~~~~- 148 (766)
.+| ||.+.+-.-..+-|.++. ..+|.+|-+-++.+.... ..+.+++..........||.+.|++..+.
T Consensus 40 ~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe 118 (156)
T 2yrb_A 40 KEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILE 118 (156)
T ss_dssp SCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHH
T ss_pred cCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhC
Confidence 355 444444343434565555 789999999998886542 24888887765444689999999999987
Q ss_pred CCceeEEEEEccCCCCCCCCCCceEEEEEEEE
Q 004233 149 TGELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (766)
Q Consensus 149 ~~~~~~~~~~l~~~~~~~~~~~g~i~l~l~~~ 180 (766)
..+.+..-.+|....+. +..-|+|...+++.
T Consensus 119 ~~~~i~g~~~L~g~~g~-~~~~G~LeywiRL~ 149 (156)
T 2yrb_A 119 KSGRIFCTASLIGTKGD-IPNFGTVEYWFRLR 149 (156)
T ss_dssp CCSCEEEEEEECBSSSC-CTTSEEEEEEEEEE
T ss_pred cCCceEEEEEEEcCCCC-cceEEEEEEEEEEe
Confidence 33445556677665542 13579999888864
No 73
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=71.36 E-value=8 Score=38.70 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHhccceEEEeccccccccCCCCccccCCCCCccHHHHHHHHHHHHHcCCCeEEEEEecC
Q 004233 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (766)
Q Consensus 559 ~~si~~a~~~lI~~Ak~~IyIe~~yFi~~~~~~p~~~~~~~~~~i~~~~a~~la~~~~~grgV~V~Illp~ 629 (766)
...+.+-..++|++|++.|+|..+ ++. -..+...|.++.+ |||.|.|++..
T Consensus 8 ~e~Ii~r~~e~I~~A~~el~lsi~---------~e~---------l~~l~~~L~~A~~--rGV~V~liv~~ 58 (233)
T 2f5t_X 8 FDEAIEMFRESLYSAKNEVIVVTP---------SEF---------FETIREDLIKTLE--RGVTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEC---------GGG---------HHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred HHHHHHHHHHHHHHhhhEEEEEeC---------HHH---------HHHHHHHHHHHHH--CCCEEEEEEcC
Confidence 357888999999999999999532 222 2346666777766 55999999985
No 74
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=66.24 E-value=22 Score=42.79 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=45.0
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeeeeeEEEeecCC----CceEEEEEEEcCCC-------------CCcee
Q 004233 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVF-------------GAQII 137 (766)
Q Consensus 80 ~dpyv~~~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~-------------~~~~i 137 (766)
.+-||++.+ ++.. ...|..+.-..+|.|||-+.|++.-. ...|.|+||+.... ....|
T Consensus 235 ~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~l 314 (940)
T 2wxf_A 235 MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPI 314 (940)
T ss_dssp CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC----------------CEEE
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecCCccCccccccccccccceE
Confidence 677888877 4322 22455554577899999999987653 34499999985321 13578
Q ss_pred EEEeccceec
Q 004233 138 GTAAIPAHTI 147 (766)
Q Consensus 138 G~~~~~l~~~ 147 (766)
|.+.++|-+.
T Consensus 315 g~~~~~lFd~ 324 (940)
T 2wxf_A 315 AWANLMLFDY 324 (940)
T ss_dssp EEEEEESBCT
T ss_pred EEEeeeEECC
Confidence 8888877553
No 75
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=57.24 E-value=3.8 Score=46.19 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=30.9
Q ss_pred cceEEeeeEEEE---------e---e----eEeEEccCCcCcccCCC----CCcccceeee
Q 004233 707 FMIYVHAKGMIV---------D---D----EYVIMGSANINQRSMAG----SKDTEIAMGS 747 (766)
Q Consensus 707 ~~~~~HsK~~IV---------D---d----~~~~IGSaNld~RS~~~----n~d~E~~v~i 747 (766)
.....|.|+++- | | .|+++|||||..-.|.. -+++|++|++
T Consensus 427 ~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k~irnyElGVL~ 487 (544)
T 1q32_A 427 GTTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLY 487 (544)
T ss_dssp TTCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEE
T ss_pred CCccCceEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhccccceEeEEEe
Confidence 456889999873 2 1 38999999998766542 2579999999
No 76
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=53.28 E-value=45 Score=40.63 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=43.9
Q ss_pred CCcEEEEEE--CCee---eeeeccccCCCCCeeeeeEEEeecCC----CceEEEEEEEcCCC-----CCceeEEEeccce
Q 004233 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVF-----GAQIIGTAAIPAH 145 (766)
Q Consensus 80 ~dpyv~~~~--~~~~---~~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~-----~~~~iG~~~~~l~ 145 (766)
.+-||++.+ +++. ...|+.+ ...+|.|||-+.|++.-. ...|.|+||+.... ....||.+.++|-
T Consensus 375 ~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 375 DKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp CCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred ceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 678998888 3322 2234433 356788999999997653 34599999986543 1357888888886
Q ss_pred ec
Q 004233 146 TI 147 (766)
Q Consensus 146 ~~ 147 (766)
+.
T Consensus 454 d~ 455 (1091)
T 3hhm_A 454 DY 455 (1091)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 77
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=47.43 E-value=61 Score=39.12 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=44.0
Q ss_pred CCcEEEEEE--CCeee--eeeccccCCCCCeeeeeEEEeecCC----CceEEEEEEEcCCC-----------------CC
Q 004233 80 SDPYVTVVV--PQATV--ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVF-----------------GA 134 (766)
Q Consensus 80 ~dpyv~~~~--~~~~~--~~T~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~-----------------~~ 134 (766)
.+-||++.+ ++... .+|+.+.-+.+|.|||-+.|++.-. ...|.|+||+.... +.
T Consensus 238 ~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (961)
T 1e7u_A 238 LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGAKPALSGKTSAEMPSPESKGKA 317 (961)
T ss_dssp EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEEEC--------------------
T ss_pred ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEecccCccccccccccccccccccc
Confidence 678888876 44332 2454444567899999999987653 34499999975321 13
Q ss_pred ceeEEEeccceec
Q 004233 135 QIIGTAAIPAHTI 147 (766)
Q Consensus 135 ~~iG~~~~~l~~~ 147 (766)
..||.+.++|-+.
T Consensus 318 ~~lg~~n~~lfd~ 330 (961)
T 1e7u_A 318 QLLYYVNLLLIDH 330 (961)
T ss_dssp CEEEEEEEESBCT
T ss_pred eeEEEEeeeeecC
Confidence 4778877777554
No 78
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=35.41 E-value=32 Score=42.02 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=33.7
Q ss_pred CCcEEEEEE--CCeee---eeeccccCCCCCeeeeeEEEeecCCC----ceEEEEEEEc
Q 004233 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDD 129 (766)
Q Consensus 80 ~dpyv~~~~--~~~~~---~~T~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~ 129 (766)
.+-||++.+ ++... ..|+.+.-+.+|.|||-+.|++.-.. ..|.|+||+.
T Consensus 371 ~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~ 429 (1092)
T 2y3a_A 371 VKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV 429 (1092)
T ss_dssp CCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence 567777655 44222 24544444778999999999877643 3499999875
No 79
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=33.18 E-value=15 Score=40.59 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=25.8
Q ss_pred eecccceEEEEccCCCCCCcceEEEEccccCCCcccCC
Q 004233 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (766)
Q Consensus 363 ~~r~H~K~~VVD~~~~~~~~~~~a~vGG~Ni~~~r~d~ 400 (766)
..+||.||+|.=.+ +....+|-+.|+....|..
T Consensus 115 fGthHsKmmiL~y~-----~glRVVI~TANL~~~DW~~ 147 (464)
T 1jy1_A 115 FGTHHTKMMLLLYE-----EGLRVVIHTSNLIHADWHQ 147 (464)
T ss_dssp TCCBCCCEEEEEES-----SCEEEEEECCCBSGGGGTS
T ss_pred ccccchhhheeecC-----CceEEEEeCCCCChhHhcc
Confidence 34799999999654 2269999999999977743
No 80
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.65 E-value=77 Score=27.24 Aligned_cols=45 Identities=18% Similarity=0.399 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHhcCCEEEEEEecCCCccCccccccCCccccCcHHHHhhhcCCCceEEe
Q 004233 285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL 343 (766)
Q Consensus 285 ~~l~~aL~~aa~rGV~VrILv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 343 (766)
.=+-+.+.+|.+|||+|.++ |+...... .++....+++.|+.++.
T Consensus 90 ewikdfieeakergvevfvv-ynnkdddr-------------rkeaqqefrsdgvdvrt 134 (162)
T 2l82_A 90 EWIKDFIEEAKERGVEVFVV-YNNKDDDR-------------RKEAQQEFRSDGVDVRT 134 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-EECSCHHH-------------HHHHHHHHCCSSCEEEE
T ss_pred HHHHHHHHHHHhcCcEEEEE-ecCCCchh-------------HHHHHHHhhhcCceeee
Confidence 45677888899999999998 66642211 13455678889999874
No 81
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=23.92 E-value=30 Score=38.25 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=32.8
Q ss_pred ceEEeeeEEE-Ee---------------eeEeEEccCCcCcccCCC----CCcccceeeeeCCcc
Q 004233 708 MIYVHAKGMI-VD---------------DEYVIMGSANINQRSMAG----SKDTEIAMGSYQPHH 752 (766)
Q Consensus 708 ~~~~HsK~~I-VD---------------d~~~~IGSaNld~RS~~~----n~d~E~~v~i~~p~~ 752 (766)
...-|.|+.+ +. =.|+++|||||..-.|.. -+++|++|++....+
T Consensus 351 ~a~PHiKtY~r~s~~~~~~~~~~~~~~~i~W~LlTSaNLSkaAWG~l~k~irsYElGVL~~p~~~ 415 (470)
T 3sq7_A 351 TTPANSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLYHSRRL 415 (470)
T ss_dssp TCCBCCEEEEEEEC--------CCTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEEEGGGS
T ss_pred CcCCceEEEEEecccccccccccCCCceeeEEEEecccCCHHHhhhhccCCcceeeeEEEccccc
Confidence 3466999887 22 139999999998655432 367999999977654
Done!