Query 004235
Match_columns 766
No_of_seqs 431 out of 1911
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 19:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 100.0 3E-127 5E-132 1094.2 35.4 695 16-757 1-721 (913)
2 KOG0245 Kinesin-like protein [ 100.0 1.7E-96 4E-101 836.3 31.5 393 7-428 3-421 (1221)
3 KOG4280 Kinesin-like protein [ 100.0 1.2E-95 3E-100 816.5 29.5 356 7-398 4-368 (574)
4 KOG0243 Kinesin-like protein [ 100.0 4.4E-92 9.5E-97 816.7 55.0 397 6-432 47-468 (1041)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 7.4E-89 1.6E-93 741.2 41.4 338 5-380 4-345 (607)
6 PLN03188 kinesin-12 family pro 100.0 1.2E-86 2.6E-91 777.2 37.1 354 7-395 97-462 (1320)
7 KOG0241 Kinesin-like protein [ 100.0 6.9E-84 1.5E-88 719.3 34.2 362 7-398 3-383 (1714)
8 KOG0242 Kinesin-like protein [ 100.0 5.5E-84 1.2E-88 749.9 30.8 352 7-401 5-367 (675)
9 cd01373 KISc_KLP2_like Kinesin 100.0 6.4E-83 1.4E-87 697.5 34.6 325 9-366 2-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 1.9E-82 4.1E-87 694.0 33.8 322 9-366 1-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 3.9E-80 8.4E-85 677.2 34.6 326 9-364 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 9.2E-80 2E-84 678.0 35.3 336 8-373 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.3E-79 2.8E-84 676.3 34.9 333 8-375 2-352 (352)
14 cd01372 KISc_KIF4 Kinesin moto 100.0 2.1E-79 4.6E-84 672.3 34.3 337 8-367 1-341 (341)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 9.8E-78 2.1E-82 656.2 33.5 323 9-366 2-333 (333)
16 cd01367 KISc_KIF2_like Kinesin 100.0 6.8E-78 1.5E-82 654.3 31.2 307 9-364 2-322 (322)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.9E-77 4.1E-82 652.5 33.5 320 8-366 2-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 2E-76 4.4E-81 642.2 32.8 308 9-364 1-319 (319)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 6.5E-76 1.4E-80 639.2 33.8 317 9-366 1-321 (321)
20 cd01375 KISc_KIF9_like Kinesin 100.0 7.7E-76 1.7E-80 641.3 32.9 319 9-364 1-334 (334)
21 cd01366 KISc_C_terminal Kinesi 100.0 1.1E-73 2.3E-78 624.2 34.8 321 8-369 2-329 (329)
22 smart00129 KISc Kinesin motor, 100.0 1.9E-73 4.1E-78 623.9 34.8 327 9-373 1-335 (335)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 3.6E-74 7.8E-79 665.3 25.6 324 8-372 314-646 (670)
24 KOG0246 Kinesin-like protein [ 100.0 1.1E-71 2.3E-76 604.3 27.5 325 4-371 204-546 (676)
25 PF00225 Kinesin: Kinesin moto 100.0 9.3E-72 2E-76 610.6 24.3 322 15-366 1-335 (335)
26 KOG0247 Kinesin-like protein [ 100.0 6.1E-70 1.3E-74 605.9 37.8 336 9-377 32-447 (809)
27 cd00106 KISc Kinesin motor dom 100.0 3.3E-70 7.2E-75 596.7 34.0 318 9-364 1-328 (328)
28 COG5059 KIP1 Kinesin-like prot 100.0 5.3E-64 1.2E-68 578.3 29.1 320 8-374 22-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.1E-50 2.4E-55 407.7 18.7 179 64-345 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.1 3.6E-08 7.9E-13 115.2 -9.7 255 3-305 300-566 (568)
31 KOG4643 Uncharacterized coiled 97.7 0.22 4.9E-06 60.1 37.1 362 343-747 246-638 (1195)
32 PF12128 DUF3584: Protein of u 97.7 0.069 1.5E-06 68.6 35.1 168 500-668 318-496 (1201)
33 PRK11637 AmiB activator; Provi 97.6 0.079 1.7E-06 60.5 29.9 68 600-667 182-252 (428)
34 KOG0161 Myosin class II heavy 97.5 0.75 1.6E-05 60.6 41.1 103 598-700 1009-1117(1930)
35 PRK11637 AmiB activator; Provi 97.5 0.3 6.5E-06 55.8 34.7 84 598-681 169-252 (428)
36 KOG0612 Rho-associated, coiled 97.5 0.36 7.8E-06 59.6 34.8 86 607-692 600-693 (1317)
37 TIGR02169 SMC_prok_A chromosom 97.4 0.34 7.3E-06 62.1 35.3 14 85-98 27-40 (1164)
38 KOG4673 Transcription factor T 97.2 0.34 7.4E-06 56.3 28.5 36 527-562 401-436 (961)
39 KOG0161 Myosin class II heavy 97.1 1.3 2.9E-05 58.4 35.8 93 570-662 1033-1129(1930)
40 TIGR02168 SMC_prok_B chromosom 97.0 0.83 1.8E-05 58.5 34.1 13 86-98 28-40 (1179)
41 TIGR02168 SMC_prok_B chromosom 97.0 1 2.3E-05 57.6 34.4 8 52-59 27-34 (1179)
42 PF07888 CALCOCO1: Calcium bin 97.0 1.1 2.4E-05 52.0 34.8 22 677-698 435-456 (546)
43 KOG0977 Nuclear envelope prote 97.0 0.79 1.7E-05 53.1 29.3 39 725-763 318-358 (546)
44 TIGR02169 SMC_prok_A chromosom 97.0 0.83 1.8E-05 58.6 33.3 17 50-66 25-41 (1164)
45 PF10174 Cast: RIM-binding pro 96.9 1.3 2.8E-05 54.0 31.9 96 574-669 468-576 (775)
46 COG1196 Smc Chromosome segrega 96.8 3.2 6.9E-05 53.6 36.4 58 642-699 440-497 (1163)
47 PF09726 Macoilin: Transmembra 96.7 1 2.3E-05 54.3 29.0 21 378-398 417-437 (697)
48 COG0556 UvrB Helicase subunit 96.7 0.0026 5.6E-08 71.9 6.6 94 46-145 3-100 (663)
49 KOG0964 Structural maintenance 96.7 1.5 3.3E-05 53.2 28.8 89 633-736 313-402 (1200)
50 KOG4643 Uncharacterized coiled 96.6 3.1 6.6E-05 50.9 37.3 231 378-629 176-435 (1195)
51 TIGR00606 rad50 rad50. This fa 96.4 5.3 0.00011 52.3 39.8 22 499-520 796-817 (1311)
52 COG1579 Zn-ribbon protein, pos 96.4 0.5 1.1E-05 49.4 20.1 118 574-696 55-172 (239)
53 PF12128 DUF3584: Protein of u 96.3 5.7 0.00012 51.5 39.7 89 47-146 55-151 (1201)
54 KOG0963 Transcription factor/C 96.3 3.3 7.2E-05 48.3 27.7 51 607-657 290-340 (629)
55 KOG1029 Endocytic adaptor prot 96.3 2.2 4.8E-05 50.5 26.2 17 107-123 43-59 (1118)
56 KOG0971 Microtubule-associated 96.2 4.3 9.2E-05 49.1 31.1 189 501-698 338-547 (1243)
57 PHA02562 46 endonuclease subun 96.2 1.4 3E-05 52.0 25.7 124 531-663 216-352 (562)
58 PF00038 Filament: Intermediat 96.2 2.5 5.5E-05 45.9 28.9 95 571-668 188-282 (312)
59 COG1196 Smc Chromosome segrega 96.0 7.9 0.00017 50.1 41.2 6 386-391 674-679 (1163)
60 PF07888 CALCOCO1: Calcium bin 96.0 4.4 9.6E-05 47.2 35.8 51 631-681 340-390 (546)
61 KOG0996 Structural maintenance 96.0 6.7 0.00015 48.9 30.1 121 532-659 444-574 (1293)
62 KOG0250 DNA repair protein RAD 95.9 1.8 4E-05 53.4 24.8 87 601-697 393-482 (1074)
63 COG4942 Membrane-bound metallo 95.9 3 6.6E-05 46.9 24.8 25 535-559 73-97 (420)
64 TIGR00606 rad50 rad50. This fa 95.9 9 0.0002 50.2 35.7 55 576-633 827-881 (1311)
65 KOG0612 Rho-associated, coiled 95.9 1.4 3E-05 54.8 23.2 149 518-671 657-834 (1317)
66 KOG2129 Uncharacterized conser 95.8 1.9 4.1E-05 47.6 21.6 79 576-654 206-298 (552)
67 KOG0250 DNA repair protein RAD 95.6 7.4 0.00016 48.3 28.1 19 79-98 61-79 (1074)
68 PF09726 Macoilin: Transmembra 95.5 2.1 4.4E-05 51.9 23.2 72 600-671 479-575 (697)
69 KOG0999 Microtubule-associated 95.5 5.5 0.00012 45.7 24.6 55 378-432 7-70 (772)
70 KOG0976 Rho/Rac1-interacting s 95.5 7.8 0.00017 46.3 31.0 58 378-440 98-155 (1265)
71 PF04849 HAP1_N: HAP1 N-termin 95.4 5 0.00011 43.5 24.9 116 535-668 167-282 (306)
72 KOG0933 Structural maintenance 95.1 12 0.00026 46.2 30.8 43 597-639 894-936 (1174)
73 PRK02224 chromosome segregatio 94.8 15 0.00033 46.0 40.9 14 85-98 27-40 (880)
74 KOG0971 Microtubule-associated 94.8 13 0.00029 45.1 33.4 93 535-634 332-428 (1243)
75 KOG0980 Actin-binding protein 94.7 14 0.0003 45.0 31.7 52 371-430 325-376 (980)
76 PF00261 Tropomyosin: Tropomyo 94.7 4.7 0.0001 42.3 20.6 95 534-632 133-227 (237)
77 KOG0994 Extracellular matrix g 94.5 17 0.00037 45.3 30.7 35 663-697 1711-1745(1758)
78 PHA02562 46 endonuclease subun 94.5 13 0.00028 43.8 28.2 92 531-624 251-352 (562)
79 COG1579 Zn-ribbon protein, pos 94.5 4.7 0.0001 42.3 19.5 138 501-684 37-174 (239)
80 PRK02224 chromosome segregatio 94.5 18 0.00039 45.3 41.0 16 52-67 27-42 (880)
81 PF00308 Bac_DnaA: Bacterial d 94.4 0.025 5.4E-07 58.6 2.6 49 46-98 3-51 (219)
82 PF09755 DUF2046: Uncharacteri 94.3 9.4 0.0002 41.3 28.7 93 605-697 174-278 (310)
83 PRK09039 hypothetical protein; 94.2 4.7 0.0001 44.8 20.0 77 531-625 77-153 (343)
84 PF12325 TMF_TATA_bd: TATA ele 94.2 0.75 1.6E-05 43.1 11.5 90 535-632 30-119 (120)
85 TIGR03007 pepcterm_ChnLen poly 94.1 9.5 0.00021 44.4 23.4 108 500-608 166-285 (498)
86 KOG4674 Uncharacterized conser 94.0 30 0.00064 45.9 35.0 163 535-697 689-861 (1822)
87 PRK03918 chromosome segregatio 93.9 23 0.0005 44.3 36.9 14 85-98 27-40 (880)
88 COG2805 PilT Tfp pilus assembl 93.9 0.029 6.3E-07 59.9 1.8 33 66-98 110-142 (353)
89 COG3883 Uncharacterized protei 93.8 10 0.00022 40.3 20.3 35 634-668 183-217 (265)
90 PRK06893 DNA replication initi 93.6 0.039 8.5E-07 57.5 2.3 46 46-98 11-56 (229)
91 KOG0995 Centromere-associated 93.6 18 0.0004 42.0 28.2 90 605-695 304-393 (581)
92 PF14988 DUF4515: Domain of un 93.5 10 0.00022 39.0 23.1 77 529-610 41-122 (206)
93 PF00038 Filament: Intermediat 93.5 13 0.00029 40.3 35.9 74 626-699 208-281 (312)
94 PF12718 Tropomyosin_1: Tropom 93.4 6.8 0.00015 37.9 17.1 87 499-602 18-104 (143)
95 COG4942 Membrane-bound metallo 93.1 18 0.0004 40.8 26.6 51 496-551 60-110 (420)
96 KOG0018 Structural maintenance 93.1 20 0.00044 44.5 23.8 129 496-635 775-903 (1141)
97 PF05667 DUF812: Protein of un 93.1 24 0.00052 42.1 31.3 20 502-521 370-389 (594)
98 PF08317 Spc7: Spc7 kinetochor 93.1 5.4 0.00012 43.9 18.0 49 607-655 235-283 (325)
99 PRK04863 mukB cell division pr 92.7 45 0.00096 44.2 33.1 158 499-667 311-475 (1486)
100 PRK06620 hypothetical protein; 92.6 0.059 1.3E-06 55.7 1.8 48 46-98 11-61 (214)
101 PF14988 DUF4515: Domain of un 92.6 14 0.0003 38.1 23.1 120 576-698 52-174 (206)
102 KOG0977 Nuclear envelope prote 92.6 25 0.00055 41.1 31.6 20 529-548 198-217 (546)
103 PRK09039 hypothetical protein; 92.5 10 0.00022 42.1 19.2 32 605-636 168-199 (343)
104 KOG0946 ER-Golgi vesicle-tethe 92.4 32 0.00068 41.7 25.9 22 676-697 917-938 (970)
105 KOG0964 Structural maintenance 92.1 38 0.00081 41.9 31.5 12 87-98 31-42 (1200)
106 KOG4674 Uncharacterized conser 92.1 54 0.0012 43.6 40.0 116 633-753 1010-1128(1822)
107 TIGR01005 eps_transp_fam exopo 91.5 11 0.00024 46.3 20.0 60 500-560 199-262 (754)
108 KOG0933 Structural maintenance 91.5 45 0.00097 41.4 34.2 29 574-602 783-811 (1174)
109 PF15254 CCDC14: Coiled-coil d 91.3 17 0.00037 43.7 19.6 64 498-561 397-467 (861)
110 PF05010 TACC: Transforming ac 91.2 20 0.00043 36.9 19.7 122 534-669 61-182 (207)
111 PRK14086 dnaA chromosomal repl 91.2 0.1 2.2E-06 61.5 1.9 49 46-98 283-331 (617)
112 PF08614 ATG16: Autophagy prot 91.1 3.8 8.2E-05 41.7 12.9 88 534-625 73-160 (194)
113 PRK04778 septation ring format 91.1 40 0.00086 40.2 33.2 44 581-624 296-339 (569)
114 PRK09087 hypothetical protein; 91.1 0.13 2.8E-06 53.7 2.2 46 46-98 16-61 (226)
115 KOG4807 F-actin binding protei 91.0 29 0.00063 38.4 24.4 31 527-557 344-378 (593)
116 COG2804 PulE Type II secretory 90.8 0.14 3.1E-06 58.5 2.4 31 69-99 246-276 (500)
117 PRK03918 chromosome segregatio 90.8 53 0.0011 41.1 41.3 7 53-59 28-34 (880)
118 PRK14088 dnaA chromosomal repl 90.5 0.15 3.3E-06 58.4 2.3 48 46-98 100-147 (440)
119 TIGR03017 EpsF chain length de 90.5 29 0.00062 39.7 21.0 119 500-618 176-302 (444)
120 PF09755 DUF2046: Uncharacteri 90.3 30 0.00066 37.5 25.5 97 602-698 99-203 (310)
121 PF10174 Cast: RIM-binding pro 90.3 54 0.0012 40.4 36.3 89 605-693 332-423 (775)
122 COG1340 Uncharacterized archae 90.1 30 0.00066 37.3 27.6 27 535-561 158-184 (294)
123 PF05557 MAD: Mitotic checkpoi 90.0 2.7 5.8E-05 51.4 12.7 27 534-560 509-535 (722)
124 KOG4673 Transcription factor T 90.0 49 0.0011 39.4 29.0 18 341-358 398-415 (961)
125 PF10168 Nup88: Nuclear pore c 89.7 14 0.0003 45.2 18.0 28 668-695 684-711 (717)
126 PF05010 TACC: Transforming ac 89.7 27 0.00058 36.0 24.8 70 582-651 77-146 (207)
127 PRK05642 DNA replication initi 89.5 0.23 4.9E-06 52.0 2.5 45 46-98 14-62 (234)
128 PF04851 ResIII: Type III rest 89.5 0.22 4.7E-06 48.8 2.2 32 68-99 11-43 (184)
129 COG3883 Uncharacterized protei 89.4 33 0.00071 36.6 22.0 13 534-546 86-98 (265)
130 PF09787 Golgin_A5: Golgin sub 89.3 51 0.0011 38.7 31.6 161 532-700 211-382 (511)
131 PRK00149 dnaA chromosomal repl 88.9 0.25 5.4E-06 56.9 2.5 49 46-98 117-165 (450)
132 KOG0999 Microtubule-associated 88.9 51 0.0011 38.2 26.7 152 500-655 13-191 (772)
133 PF04111 APG6: Autophagy prote 88.9 7.3 0.00016 42.7 13.7 27 535-561 43-69 (314)
134 PRK12377 putative replication 88.8 0.3 6.4E-06 51.7 2.8 49 47-98 70-118 (248)
135 TIGR00362 DnaA chromosomal rep 88.5 0.29 6.2E-06 55.5 2.6 49 46-98 105-153 (405)
136 COG4372 Uncharacterized protei 88.4 46 0.00099 37.0 27.8 81 293-396 8-91 (499)
137 PRK04863 mukB cell division pr 88.1 1.1E+02 0.0023 40.8 27.5 16 83-98 29-44 (1486)
138 COG0593 DnaA ATPase involved i 87.9 0.3 6.4E-06 55.1 2.2 49 46-98 82-130 (408)
139 smart00787 Spc7 Spc7 kinetocho 87.9 30 0.00065 37.9 17.5 55 604-658 227-281 (312)
140 KOG4657 Uncharacterized conser 87.8 29 0.00064 35.8 15.9 21 666-686 126-146 (246)
141 PRK06526 transposase; Provisio 87.8 0.29 6.3E-06 51.9 2.0 20 78-99 97-116 (254)
142 PRK08116 hypothetical protein; 87.7 0.3 6.5E-06 52.3 2.0 50 46-98 80-131 (268)
143 PF05667 DUF812: Protein of un 87.7 70 0.0015 38.3 26.8 28 725-752 486-513 (594)
144 PRK00411 cdc6 cell division co 87.7 0.48 1E-05 53.2 3.8 27 72-98 45-72 (394)
145 COG1474 CDC6 Cdc6-related prot 87.6 0.75 1.6E-05 51.5 5.2 27 72-98 32-59 (366)
146 PF15070 GOLGA2L5: Putative go 87.6 72 0.0016 38.3 31.6 53 533-593 165-217 (617)
147 cd00009 AAA The AAA+ (ATPases 87.4 0.41 8.8E-06 44.3 2.5 30 69-98 7-36 (151)
148 PRK08727 hypothetical protein; 87.4 0.27 5.8E-06 51.4 1.4 44 46-98 14-58 (233)
149 PRK08084 DNA replication initi 87.4 0.34 7.5E-06 50.7 2.2 46 46-98 17-62 (235)
150 PF15066 CAGE1: Cancer-associa 87.4 59 0.0013 37.1 26.0 47 615-661 459-505 (527)
151 KOG0804 Cytoplasmic Zn-finger 87.1 22 0.00047 40.3 15.7 39 193-237 120-159 (493)
152 PRK07952 DNA replication prote 87.0 0.46 1E-05 50.1 2.9 50 46-98 67-116 (244)
153 TIGR03420 DnaA_homol_Hda DnaA 86.9 0.38 8.3E-06 49.4 2.2 46 46-98 10-55 (226)
154 PRK14087 dnaA chromosomal repl 86.9 0.37 8E-06 55.5 2.2 48 47-98 111-158 (450)
155 KOG1029 Endocytic adaptor prot 86.8 82 0.0018 38.2 28.7 55 615-676 530-584 (1118)
156 TIGR00631 uvrb excinuclease AB 86.8 0.39 8.5E-06 57.8 2.5 93 48-146 2-98 (655)
157 PRK08903 DnaA regulatory inact 86.6 0.48 1E-05 49.0 2.7 47 46-98 13-59 (227)
158 PF00769 ERM: Ezrin/radixin/mo 86.6 33 0.00071 36.3 16.5 22 573-594 7-28 (246)
159 TIGR02928 orc1/cdc6 family rep 86.5 0.48 1E-05 52.5 2.9 27 72-98 30-57 (365)
160 PF00437 T2SE: Type II/IV secr 86.4 0.45 9.8E-06 50.6 2.5 30 69-98 112-144 (270)
161 COG5008 PilU Tfp pilus assembl 86.3 0.49 1.1E-05 49.9 2.6 43 69-111 115-159 (375)
162 PF08317 Spc7: Spc7 kinetochor 86.3 58 0.0013 35.9 23.2 54 535-596 149-202 (325)
163 KOG1853 LIS1-interacting prote 85.9 49 0.0011 34.7 21.5 63 606-668 56-118 (333)
164 PF15070 GOLGA2L5: Putative go 85.7 89 0.0019 37.6 38.8 33 528-560 115-150 (617)
165 PF12718 Tropomyosin_1: Tropom 85.7 36 0.00077 33.0 18.5 54 580-633 51-104 (143)
166 COG5185 HEC1 Protein involved 85.6 42 0.00092 38.2 17.0 28 534-561 294-321 (622)
167 KOG0996 Structural maintenance 85.6 1.2E+02 0.0025 38.7 35.5 84 578-664 412-502 (1293)
168 PF09730 BicD: Microtubule-ass 85.5 80 0.0017 38.5 20.7 62 495-561 27-88 (717)
169 PF05622 HOOK: HOOK protein; 85.5 0.25 5.4E-06 60.2 0.0 28 676-703 583-610 (713)
170 TIGR03185 DNA_S_dndD DNA sulfu 85.5 95 0.0021 37.6 27.2 16 83-98 30-45 (650)
171 PF11559 ADIP: Afadin- and alp 85.4 29 0.00064 33.5 14.4 25 535-559 52-76 (151)
172 PF13245 AAA_19: Part of AAA d 85.3 0.44 9.6E-06 40.8 1.4 25 73-98 3-27 (76)
173 PRK10436 hypothetical protein; 85.2 0.45 9.8E-06 54.8 1.9 27 72-98 209-235 (462)
174 PF08172 CASP_C: CASP C termin 85.2 12 0.00026 39.6 12.3 47 570-633 85-131 (248)
175 TIGR01005 eps_transp_fam exopo 85.1 99 0.0021 38.1 22.2 65 333-397 152-219 (754)
176 TIGR02533 type_II_gspE general 85.0 0.5 1.1E-05 54.9 2.1 28 72-99 233-260 (486)
177 TIGR02538 type_IV_pilB type IV 84.9 0.45 9.8E-06 56.3 1.7 27 72-98 307-333 (564)
178 cd00046 DEXDc DEAD-like helica 84.4 0.4 8.7E-06 43.8 0.8 15 84-98 3-17 (144)
179 TIGR01420 pilT_fam pilus retra 84.3 0.64 1.4E-05 51.6 2.5 30 69-98 110-139 (343)
180 PF04156 IncA: IncA protein; 84.2 27 0.00058 35.1 14.1 55 575-632 127-181 (191)
181 KOG0804 Cytoplasmic Zn-finger 84.2 23 0.0005 40.1 14.2 24 633-656 420-443 (493)
182 cd01131 PilT Pilus retraction 84.0 0.42 9.1E-06 48.6 0.8 18 81-98 1-18 (198)
183 TIGR02525 plasmid_TraJ plasmid 83.8 0.58 1.3E-05 52.4 1.9 27 71-98 140-166 (372)
184 PF10186 Atg14: UV radiation r 83.4 67 0.0015 34.3 18.3 24 537-560 22-45 (302)
185 PRK08181 transposase; Validate 83.3 0.95 2.1E-05 48.5 3.2 19 78-98 105-123 (269)
186 COG4372 Uncharacterized protei 83.2 82 0.0018 35.1 26.6 30 638-667 207-236 (499)
187 PF05701 WEMBL: Weak chloropla 83.1 1E+02 0.0023 36.3 36.3 98 531-628 168-268 (522)
188 TIGR02524 dot_icm_DotB Dot/Icm 82.9 0.65 1.4E-05 51.8 1.8 23 76-98 129-151 (358)
189 PF13401 AAA_22: AAA domain; P 82.6 0.46 1E-05 44.1 0.4 18 81-98 4-21 (131)
190 PF04156 IncA: IncA protein; 82.4 54 0.0012 32.8 15.5 21 533-553 128-148 (191)
191 PF10146 zf-C4H2: Zinc finger- 82.4 50 0.0011 34.6 15.3 56 536-603 2-57 (230)
192 KOG1899 LAR transmembrane tyro 82.1 82 0.0018 37.2 17.8 106 503-623 140-245 (861)
193 KOG0993 Rab5 GTPase effector R 82.0 43 0.00092 37.5 14.9 41 628-668 142-182 (542)
194 PF01935 DUF87: Domain of unkn 82.0 0.54 1.2E-05 48.6 0.7 15 84-98 26-40 (229)
195 smart00382 AAA ATPases associa 81.9 0.55 1.2E-05 42.8 0.7 17 82-98 3-19 (148)
196 PF00270 DEAD: DEAD/DEAH box h 81.8 0.78 1.7E-05 44.4 1.7 25 72-98 7-31 (169)
197 PRK01156 chromosome segregatio 81.7 1.5E+02 0.0033 37.2 34.4 46 578-623 619-664 (895)
198 KOG4809 Rab6 GTPase-interactin 81.4 1.1E+02 0.0025 35.5 28.8 172 526-698 419-612 (654)
199 PF10168 Nup88: Nuclear pore c 81.4 21 0.00046 43.6 13.9 20 264-283 371-390 (717)
200 PF04111 APG6: Autophagy prote 81.2 26 0.00055 38.5 13.4 25 537-561 11-35 (314)
201 cd01129 PulE-GspE PulE/GspE Th 81.1 0.92 2E-05 48.4 2.1 27 72-98 71-97 (264)
202 PF13870 DUF4201: Domain of un 80.7 64 0.0014 32.1 15.5 105 499-628 17-124 (177)
203 PF02841 GBP_C: Guanylate-bind 80.6 14 0.00031 40.0 11.2 14 315-328 25-38 (297)
204 PRK08939 primosomal protein Dn 80.5 0.99 2.1E-05 49.3 2.1 50 48-99 124-174 (306)
205 PF15294 Leu_zip: Leucine zipp 79.9 85 0.0018 33.8 16.1 21 673-693 257-277 (278)
206 PF12846 AAA_10: AAA-like doma 79.9 0.69 1.5E-05 49.2 0.7 18 81-98 1-18 (304)
207 PRK06835 DNA replication prote 79.6 1 2.2E-05 49.7 1.8 29 69-98 172-200 (329)
208 PRK06921 hypothetical protein; 79.4 1.3 2.8E-05 47.3 2.6 30 69-98 102-134 (266)
209 PRK12422 chromosomal replicati 79.1 1.4 2.9E-05 50.8 2.8 49 46-98 106-158 (445)
210 PF13604 AAA_30: AAA domain; P 79.0 0.98 2.1E-05 45.9 1.5 27 72-98 9-35 (196)
211 PF09789 DUF2353: Uncharacteri 79.0 1.1E+02 0.0023 33.7 23.0 133 595-733 126-262 (319)
212 TIGR02782 TrbB_P P-type conjug 78.9 1.1 2.3E-05 48.8 1.8 28 70-98 122-149 (299)
213 KOG0946 ER-Golgi vesicle-tethe 78.8 1.7E+02 0.0037 35.9 23.7 65 492-561 654-718 (970)
214 KOG2991 Splicing regulator [RN 78.7 39 0.00084 35.5 12.6 20 314-333 93-112 (330)
215 PF14992 TMCO5: TMCO5 family 78.6 74 0.0016 34.2 15.1 26 535-560 63-88 (280)
216 KOG1265 Phospholipase C [Lipid 78.6 71 0.0015 39.3 16.3 99 635-750 1076-1181(1189)
217 PF03962 Mnd1: Mnd1 family; I 78.5 38 0.00083 34.3 12.7 29 534-562 68-96 (188)
218 COG2433 Uncharacterized conser 78.4 27 0.00058 41.1 12.6 58 537-599 438-495 (652)
219 KOG0982 Centrosomal protein Nu 78.1 1.3E+02 0.0028 34.1 19.4 186 386-640 278-479 (502)
220 TIGR01000 bacteriocin_acc bact 78.0 1.4E+02 0.003 34.5 23.5 20 647-666 242-261 (457)
221 PF00448 SRP54: SRP54-type pro 77.9 0.89 1.9E-05 46.3 0.7 16 83-98 3-18 (196)
222 PF05700 BCAS2: Breast carcino 77.8 92 0.002 32.3 15.9 80 537-630 138-217 (221)
223 PF01695 IstB_IS21: IstB-like 77.8 1.5 3.2E-05 44.0 2.2 30 69-98 35-64 (178)
224 KOG0962 DNA repair protein RAD 77.7 2.3E+02 0.005 36.8 27.9 91 535-628 268-365 (1294)
225 KOG0926 DEAH-box RNA helicase 77.3 1.6 3.4E-05 52.3 2.6 19 80-98 270-288 (1172)
226 KOG0980 Actin-binding protein 77.3 1.9E+02 0.0042 35.7 25.2 124 573-696 412-553 (980)
227 PRK13894 conjugal transfer ATP 77.0 1.3 2.8E-05 48.7 1.7 28 70-98 138-165 (319)
228 PTZ00112 origin recognition co 76.7 2.1 4.5E-05 52.6 3.4 28 71-98 769-798 (1164)
229 KOG0288 WD40 repeat protein Ti 76.5 43 0.00093 37.6 13.0 18 499-516 10-27 (459)
230 PRK10929 putative mechanosensi 76.5 2.4E+02 0.0052 36.4 21.4 63 534-596 64-127 (1109)
231 COG1484 DnaC DNA replication p 76.4 1.8 4E-05 45.9 2.6 35 61-98 88-122 (254)
232 PF08581 Tup_N: Tup N-terminal 76.3 47 0.001 28.8 10.7 49 572-620 26-75 (79)
233 COG2433 Uncharacterized conser 76.2 48 0.001 39.0 13.9 31 109-139 164-194 (652)
234 PF01637 Arch_ATPase: Archaeal 76.0 1.2 2.7E-05 45.2 1.1 30 69-98 8-37 (234)
235 PF13479 AAA_24: AAA domain 75.9 1.3 2.8E-05 45.6 1.3 19 81-99 3-21 (213)
236 PF00004 AAA: ATPase family as 75.3 1.2 2.5E-05 41.1 0.7 15 84-98 1-15 (132)
237 cd01130 VirB11-like_ATPase Typ 75.0 1.6 3.6E-05 43.7 1.8 29 69-98 14-42 (186)
238 PF13207 AAA_17: AAA domain; P 75.0 1.3 2.8E-05 40.6 0.9 16 83-98 1-16 (121)
239 KOG0989 Replication factor C, 74.8 2.2 4.8E-05 46.1 2.7 35 64-98 39-74 (346)
240 PF15619 Lebercilin: Ciliary p 74.7 1E+02 0.0023 31.4 21.8 54 645-698 122-182 (194)
241 PRK13833 conjugal transfer pro 74.2 1.6 3.6E-05 47.9 1.6 27 71-98 135-161 (323)
242 PF10146 zf-C4H2: Zinc finger- 74.0 80 0.0017 33.1 13.9 61 601-668 24-87 (230)
243 PRK13900 type IV secretion sys 73.7 1.9 4.1E-05 47.7 1.9 27 71-98 151-177 (332)
244 PRK12402 replication factor C 73.7 2.3 4.9E-05 46.5 2.6 21 78-98 33-53 (337)
245 PF07798 DUF1640: Protein of u 73.2 1E+02 0.0023 30.7 15.1 78 537-623 75-152 (177)
246 PRK10884 SH3 domain-containing 73.0 52 0.0011 33.9 12.0 21 576-596 91-111 (206)
247 PF13086 AAA_11: AAA domain; P 73.0 1.9 4.1E-05 43.8 1.6 25 73-98 10-34 (236)
248 PF05673 DUF815: Protein of un 72.9 1.1 2.3E-05 47.2 -0.2 46 47-98 23-69 (249)
249 PF10211 Ax_dynein_light: Axon 72.7 1.1E+02 0.0024 30.9 14.3 27 533-559 64-90 (189)
250 PRK09183 transposase/IS protei 72.7 1.9 4.1E-05 45.9 1.7 19 78-98 101-119 (259)
251 PF13514 AAA_27: AAA domain 72.5 3E+02 0.0065 35.7 32.1 56 381-438 152-207 (1111)
252 PF05557 MAD: Mitotic checkpoi 72.4 1.2 2.6E-05 54.5 0.0 76 607-694 228-309 (722)
253 TIGR02680 conserved hypothetic 72.3 3.3E+02 0.0072 36.1 26.4 14 85-98 28-41 (1353)
254 COG4962 CpaF Flp pilus assembl 72.2 2.2 4.7E-05 46.9 1.9 28 70-98 163-190 (355)
255 PHA02544 44 clamp loader, smal 72.2 2.3 5E-05 46.2 2.2 21 78-98 39-60 (316)
256 PF05266 DUF724: Protein of un 72.2 92 0.002 31.7 13.4 59 603-672 125-183 (190)
257 PF01576 Myosin_tail_1: Myosin 72.1 1.2 2.7E-05 55.3 0.0 123 496-627 494-627 (859)
258 COG1201 Lhr Lhr-like helicases 71.9 4.5 9.8E-05 49.5 4.7 25 72-98 30-54 (814)
259 PF01576 Myosin_tail_1: Myosin 71.9 1.2 2.7E-05 55.2 0.0 28 571-598 173-200 (859)
260 PRK06547 hypothetical protein; 71.8 3 6.5E-05 41.6 2.7 30 69-98 3-32 (172)
261 PF13191 AAA_16: AAA ATPase do 71.1 1.3 2.9E-05 43.4 0.0 26 73-98 16-41 (185)
262 TIGR03499 FlhF flagellar biosy 71.1 3.6 7.8E-05 44.3 3.3 16 83-98 196-211 (282)
263 PRK12723 flagellar biosynthesi 71.1 3.2 7E-05 46.8 3.0 18 81-98 174-191 (388)
264 PF00769 ERM: Ezrin/radixin/mo 71.0 1.5E+02 0.0032 31.5 17.7 23 646-668 87-109 (246)
265 PF07106 TBPIP: Tat binding pr 70.8 57 0.0012 32.2 11.6 52 537-594 81-132 (169)
266 PF14662 CCDC155: Coiled-coil 70.7 1.3E+02 0.0027 30.6 23.3 32 530-561 97-128 (193)
267 PF00580 UvrD-helicase: UvrD/R 70.7 1.7 3.7E-05 46.5 0.7 19 80-98 12-30 (315)
268 KOG2373 Predicted mitochondria 70.5 2.2 4.7E-05 46.7 1.4 27 71-98 261-290 (514)
269 PF10473 CENP-F_leu_zip: Leuci 70.5 1.1E+02 0.0023 29.7 15.5 61 535-603 52-112 (140)
270 PF10267 Tmemb_cc2: Predicted 70.4 30 0.00065 39.1 10.4 79 528-606 4-83 (395)
271 PRK00409 recombination and DNA 70.3 76 0.0016 39.4 14.8 32 730-762 704-736 (782)
272 PLN00020 ribulose bisphosphate 70.2 3.4 7.5E-05 46.1 2.9 51 47-98 111-165 (413)
273 PF02562 PhoH: PhoH-like prote 70.2 2.8 6.1E-05 43.1 2.1 19 80-98 18-36 (205)
274 KOG0963 Transcription factor/C 70.1 2.4E+02 0.0052 33.6 32.1 24 413-436 115-138 (629)
275 PRK13851 type IV secretion sys 70.0 1.8 3.9E-05 48.0 0.7 28 70-98 152-179 (344)
276 smart00487 DEXDc DEAD-like hel 70.0 2.8 6.1E-05 40.7 2.1 25 73-98 17-41 (201)
277 TIGR01843 type_I_hlyD type I s 69.4 2E+02 0.0042 32.3 23.5 24 579-602 166-189 (423)
278 PRK01156 chromosome segregatio 69.4 3.1E+02 0.0067 34.6 38.2 16 83-98 25-40 (895)
279 PF03962 Mnd1: Mnd1 family; I 69.2 55 0.0012 33.1 11.2 20 535-554 76-95 (188)
280 PRK03992 proteasome-activating 69.2 1.4 3.1E-05 49.7 -0.3 51 47-98 127-182 (389)
281 PF07724 AAA_2: AAA domain (Cd 69.1 2.3 4.9E-05 42.4 1.2 17 82-98 4-20 (171)
282 PF01580 FtsK_SpoIIIE: FtsK/Sp 68.9 1.8 3.9E-05 43.9 0.4 16 83-98 40-55 (205)
283 COG1382 GimC Prefoldin, chaper 68.8 95 0.0021 29.1 11.5 39 573-621 72-110 (119)
284 COG1223 Predicted ATPase (AAA+ 68.7 2.1 4.6E-05 45.2 0.9 17 82-98 152-168 (368)
285 PHA00729 NTP-binding motif con 68.6 3.7 8.1E-05 42.8 2.7 30 69-98 5-34 (226)
286 PF06309 Torsin: Torsin; Inte 68.6 4.8 0.0001 38.1 3.1 40 69-121 37-80 (127)
287 TIGR03015 pepcterm_ATPase puta 68.5 3 6.4E-05 44.0 2.0 22 77-98 39-60 (269)
288 PRK10361 DNA recombination pro 68.5 2.4E+02 0.0051 32.9 25.5 39 603-641 107-154 (475)
289 smart00763 AAA_PrkA PrkA AAA d 68.5 7.4 0.00016 43.4 5.1 68 46-119 44-141 (361)
290 cd00268 DEADc DEAD-box helicas 68.4 3.3 7.1E-05 41.6 2.2 25 72-98 29-53 (203)
291 TIGR02903 spore_lon_C ATP-depe 68.4 2.4 5.1E-05 50.9 1.3 43 47-98 150-192 (615)
292 TIGR01000 bacteriocin_acc bact 68.3 2.3E+02 0.005 32.7 20.8 17 502-518 104-120 (457)
293 PF13671 AAA_33: AAA domain; P 68.1 2.3 5E-05 40.0 0.9 16 83-98 1-16 (143)
294 PRK13764 ATPase; Provisional 68.0 2.6 5.6E-05 50.1 1.5 20 79-98 255-274 (602)
295 PF09304 Cortex-I_coil: Cortex 67.9 99 0.0022 28.4 11.6 91 530-654 11-101 (107)
296 COG2841 Uncharacterized protei 67.9 17 0.00036 30.6 5.7 48 585-632 7-62 (72)
297 PF10498 IFT57: Intra-flagella 67.8 1.4E+02 0.003 33.5 14.9 59 576-634 260-319 (359)
298 PF13851 GAS: Growth-arrest sp 67.7 1.5E+02 0.0033 30.3 23.8 86 538-630 110-199 (201)
299 PRK10884 SH3 domain-containing 67.7 70 0.0015 32.9 11.7 19 575-593 97-115 (206)
300 PRK13729 conjugal transfer pil 67.5 15 0.00032 42.2 7.2 43 579-624 77-119 (475)
301 PF10226 DUF2216: Uncharacteri 67.1 52 0.0011 33.2 10.0 37 520-556 97-136 (195)
302 PF10211 Ax_dynein_light: Axon 67.1 94 0.002 31.5 12.4 22 610-631 164-185 (189)
303 PF12325 TMF_TATA_bd: TATA ele 66.7 1.2E+02 0.0025 28.6 14.0 53 370-434 7-59 (120)
304 PF00910 RNA_helicase: RNA hel 66.5 2 4.3E-05 39.1 0.1 26 84-122 1-26 (107)
305 PRK12704 phosphodiesterase; Pr 66.5 2.7E+02 0.0059 32.8 22.2 157 508-671 30-192 (520)
306 PTZ00424 helicase 45; Provisio 66.4 3.2 7E-05 46.5 1.9 26 71-98 57-82 (401)
307 PF07728 AAA_5: AAA domain (dy 66.4 2.3 5E-05 40.1 0.5 15 84-98 2-16 (139)
308 KOG0953 Mitochondrial RNA heli 66.0 4.8 0.0001 46.6 3.0 43 83-125 193-238 (700)
309 PF10473 CENP-F_leu_zip: Leuci 65.9 1.3E+02 0.0029 29.0 16.7 19 537-555 26-44 (140)
310 PF14282 FlxA: FlxA-like prote 65.8 29 0.00062 31.8 7.6 22 534-555 18-39 (106)
311 PF13238 AAA_18: AAA domain; P 65.7 2.5 5.4E-05 38.7 0.6 15 84-98 1-15 (129)
312 PF15066 CAGE1: Cancer-associa 65.4 2.6E+02 0.0056 32.2 25.2 75 604-693 406-484 (527)
313 PTZ00454 26S protease regulato 65.3 1.9 4.1E-05 48.8 -0.3 52 46-98 140-196 (398)
314 KOG4807 F-actin binding protei 65.3 2.3E+02 0.0051 31.7 26.8 72 570-641 413-488 (593)
315 PRK14722 flhF flagellar biosyn 65.3 2.7 5.9E-05 47.1 1.0 18 81-98 137-154 (374)
316 COG1219 ClpX ATP-dependent pro 65.0 2.8 6.1E-05 45.5 0.9 16 82-97 98-113 (408)
317 cd07649 F-BAR_GAS7 The F-BAR ( 64.5 1.9E+02 0.0041 30.3 14.9 99 535-644 100-200 (233)
318 PRK00409 recombination and DNA 64.5 57 0.0012 40.4 12.2 11 723-733 719-729 (782)
319 PF03215 Rad17: Rad17 cell cyc 64.4 4 8.8E-05 47.8 2.2 30 69-98 31-62 (519)
320 COG1419 FlhF Flagellar GTP-bin 64.4 5.2 0.00011 45.0 2.9 18 81-98 203-220 (407)
321 PF05266 DUF724: Protein of un 64.3 1.1E+02 0.0025 31.0 12.3 78 537-625 98-175 (190)
322 PF06120 Phage_HK97_TLTM: Tail 64.3 2.2E+02 0.0048 31.1 18.8 41 605-645 151-192 (301)
323 PRK11776 ATP-dependent RNA hel 64.0 4.2 9E-05 46.8 2.2 25 72-98 34-58 (460)
324 COG0419 SbcC ATPase involved i 63.9 3.9E+02 0.0085 33.8 27.9 17 82-98 26-42 (908)
325 TIGR02788 VirB11 P-type DNA tr 63.6 5.1 0.00011 43.7 2.7 29 69-98 133-161 (308)
326 PF05970 PIF1: PIF1-like helic 63.5 5 0.00011 44.8 2.7 35 60-98 5-39 (364)
327 smart00787 Spc7 Spc7 kinetocho 63.2 2.4E+02 0.0051 31.0 19.9 26 571-596 172-197 (312)
328 PF09730 BicD: Microtubule-ass 63.1 3.6E+02 0.0078 33.1 31.1 145 535-680 265-437 (717)
329 KOG3433 Protein involved in me 63.0 1.1E+02 0.0023 30.9 11.1 67 576-646 79-149 (203)
330 TIGR02881 spore_V_K stage V sp 63.0 3.5 7.6E-05 43.7 1.2 18 81-98 42-59 (261)
331 PF02456 Adeno_IVa2: Adenoviru 62.9 3 6.5E-05 45.1 0.7 70 83-152 89-186 (369)
332 PRK04778 septation ring format 62.8 3.3E+02 0.0071 32.5 34.7 63 636-698 443-508 (569)
333 PF04849 HAP1_N: HAP1 N-termin 62.7 2.4E+02 0.0052 30.9 24.5 140 574-749 163-302 (306)
334 PTZ00361 26 proteosome regulat 62.4 5.5 0.00012 45.7 2.7 16 83-98 219-234 (438)
335 TIGR03319 YmdA_YtgF conserved 62.0 3.2E+02 0.007 32.2 22.5 32 608-639 110-141 (514)
336 PRK10536 hypothetical protein; 61.9 4.6 0.0001 42.9 1.9 17 82-98 75-91 (262)
337 PF06414 Zeta_toxin: Zeta toxi 61.7 3.8 8.2E-05 41.5 1.1 18 81-98 15-32 (199)
338 TIGR00634 recN DNA repair prot 61.3 3.4E+02 0.0074 32.2 25.4 29 533-561 264-292 (563)
339 PRK11192 ATP-dependent RNA hel 61.2 4.9 0.00011 45.9 2.1 25 72-98 31-55 (434)
340 TIGR03007 pepcterm_ChnLen poly 61.1 3.2E+02 0.0068 31.7 26.6 107 332-438 118-230 (498)
341 PF09744 Jnk-SapK_ap_N: JNK_SA 60.4 1.8E+02 0.0039 28.7 13.3 34 607-640 122-155 (158)
342 cd01126 TraG_VirD4 The TraG/Tr 60.3 3.6 7.9E-05 46.2 0.8 15 84-98 2-16 (384)
343 PF15619 Lebercilin: Ciliary p 60.1 2E+02 0.0044 29.3 22.5 86 577-669 88-178 (194)
344 TIGR03819 heli_sec_ATPase heli 60.0 13 0.00029 41.2 5.2 29 69-98 167-195 (340)
345 PF06048 DUF927: Domain of unk 60.0 7.1 0.00015 42.1 3.0 29 69-98 182-210 (286)
346 PF04065 Not3: Not1 N-terminal 59.8 2.2E+02 0.0049 29.9 13.7 47 511-560 21-67 (233)
347 PF13555 AAA_29: P-loop contai 59.7 4.1 8.8E-05 33.6 0.8 15 84-98 26-40 (62)
348 PF03904 DUF334: Domain of unk 59.7 2.2E+02 0.0049 29.6 13.7 94 537-648 59-152 (230)
349 PRK11448 hsdR type I restricti 59.6 5.6 0.00012 50.9 2.4 29 70-99 423-451 (1123)
350 PRK11331 5-methylcytosine-spec 59.5 6.3 0.00014 45.2 2.5 28 331-362 320-347 (459)
351 TIGR00348 hsdR type I site-spe 59.5 6.8 0.00015 47.5 3.0 31 68-99 246-281 (667)
352 PRK00440 rfc replication facto 59.5 6.4 0.00014 42.5 2.5 21 78-98 35-55 (319)
353 PRK04837 ATP-dependent RNA hel 59.3 5.3 0.00012 45.4 2.0 25 72-98 38-62 (423)
354 PLN03025 replication factor C 59.3 6.6 0.00014 42.9 2.6 20 79-98 32-51 (319)
355 PF12775 AAA_7: P-loop contain 59.1 5.3 0.00011 42.9 1.7 26 72-98 25-50 (272)
356 KOG0288 WD40 repeat protein Ti 59.1 3.1E+02 0.0068 31.1 17.6 139 600-756 4-146 (459)
357 TIGR03319 YmdA_YtgF conserved 58.7 3.7E+02 0.0079 31.7 22.5 41 659-699 94-134 (514)
358 KOG1899 LAR transmembrane tyro 58.3 3.9E+02 0.0084 31.9 19.1 67 599-668 192-258 (861)
359 PHA02244 ATPase-like protein 58.3 9.3 0.0002 42.8 3.5 27 70-98 110-136 (383)
360 PF10481 CENP-F_N: Cenp-F N-te 58.1 1.2E+02 0.0027 32.2 11.3 117 535-669 53-190 (307)
361 PF11365 DUF3166: Protein of u 58.0 94 0.002 28.1 9.1 80 505-596 4-87 (96)
362 KOG2129 Uncharacterized conser 58.0 3.2E+02 0.007 30.9 21.0 31 407-437 45-75 (552)
363 PF05911 DUF869: Plant protein 57.9 4.5E+02 0.0099 32.6 23.2 95 531-628 48-153 (769)
364 KOG1853 LIS1-interacting prote 57.8 2.5E+02 0.0055 29.6 21.1 54 535-592 52-105 (333)
365 PF12774 AAA_6: Hydrolytic ATP 57.7 7.4 0.00016 40.7 2.5 40 85-124 36-83 (231)
366 KOG4403 Cell surface glycoprot 57.7 3.3E+02 0.0072 31.0 17.9 17 648-664 309-325 (575)
367 PF00735 Septin: Septin; Inte 57.5 3.9 8.4E-05 44.1 0.4 21 78-98 1-21 (281)
368 PRK09841 cryptic autophosphory 57.4 1.9E+02 0.0042 35.5 15.0 55 500-554 272-330 (726)
369 PRK10590 ATP-dependent RNA hel 57.4 6.6 0.00014 45.3 2.3 25 72-98 31-55 (456)
370 PRK00771 signal recognition pa 57.4 11 0.00024 43.3 4.1 18 81-98 95-112 (437)
371 TIGR01541 tape_meas_lam_C phag 57.2 3.1E+02 0.0067 30.4 19.0 20 723-742 155-174 (332)
372 PF05729 NACHT: NACHT domain 57.1 5 0.00011 38.3 1.1 16 83-98 2-17 (166)
373 KOG3990 Uncharacterized conser 57.1 52 0.0011 34.5 8.3 25 578-602 225-249 (305)
374 PRK13341 recombination factor 57.0 6.6 0.00014 48.0 2.3 21 78-98 49-69 (725)
375 PRK11519 tyrosine kinase; Prov 56.6 2.8E+02 0.0062 34.0 16.3 55 500-554 272-330 (719)
376 PRK04328 hypothetical protein; 56.6 7.3 0.00016 41.1 2.3 27 71-97 10-39 (249)
377 COG1136 SalX ABC-type antimicr 56.5 4.4 9.5E-05 42.2 0.6 15 84-98 34-48 (226)
378 PF08614 ATG16: Autophagy prot 56.5 1.5E+02 0.0033 30.0 11.7 23 576-598 72-94 (194)
379 cd01127 TrwB Bacterial conjuga 56.4 4.7 0.0001 45.8 0.9 17 82-98 43-59 (410)
380 TIGR01242 26Sp45 26S proteasom 56.3 4.7 0.0001 45.0 0.9 51 47-98 118-173 (364)
381 KOG0727 26S proteasome regulat 56.2 4.2 9.2E-05 42.7 0.4 118 9-127 98-249 (408)
382 KOG0994 Extracellular matrix g 56.0 5.6E+02 0.012 33.0 36.5 52 647-698 1646-1697(1758)
383 TIGR01618 phage_P_loop phage n 55.9 4.9 0.00011 41.8 0.8 18 81-98 12-29 (220)
384 PRK00106 hypothetical protein; 55.7 4.2E+02 0.009 31.5 23.9 38 661-698 117-154 (535)
385 PF13476 AAA_23: AAA domain; P 55.7 5.4 0.00012 39.5 1.1 17 82-98 20-36 (202)
386 PF07058 Myosin_HC-like: Myosi 55.3 2.7E+02 0.0058 30.3 13.3 67 530-600 61-137 (351)
387 PRK04195 replication factor C 55.3 7.5 0.00016 45.2 2.3 30 69-98 26-56 (482)
388 PF07106 TBPIP: Tat binding pr 55.1 1.3E+02 0.0028 29.7 10.8 55 498-562 82-136 (169)
389 cd01120 RecA-like_NTPases RecA 55.1 4.9 0.00011 38.1 0.6 15 84-98 2-16 (165)
390 PRK11546 zraP zinc resistance 55.0 74 0.0016 30.8 8.5 56 527-597 53-108 (143)
391 PF05701 WEMBL: Weak chloropla 55.0 4.2E+02 0.0091 31.3 30.9 104 526-630 118-246 (522)
392 PRK14974 cell division protein 54.6 13 0.00027 41.3 3.8 18 81-98 140-157 (336)
393 PF05622 HOOK: HOOK protein; 54.5 4.1 8.9E-05 49.8 0.0 32 610-641 357-388 (713)
394 KOG4360 Uncharacterized coiled 54.3 4.1E+02 0.0089 31.0 17.0 139 574-749 162-301 (596)
395 PF11802 CENP-K: Centromere-as 54.2 3E+02 0.0066 29.4 16.7 31 611-641 156-186 (268)
396 PF06156 DUF972: Protein of un 54.2 76 0.0016 29.2 8.2 36 405-440 22-57 (107)
397 TIGR02237 recomb_radB DNA repa 54.2 7.1 0.00015 39.6 1.7 25 74-98 2-29 (209)
398 TIGR00614 recQ_fam ATP-depende 54.0 8.3 0.00018 44.6 2.4 26 71-98 18-43 (470)
399 KOG3990 Uncharacterized conser 54.0 66 0.0014 33.8 8.4 69 491-562 221-294 (305)
400 cd01123 Rad51_DMC1_radA Rad51_ 54.0 8.3 0.00018 39.8 2.2 29 70-98 5-36 (235)
401 TIGR02338 gimC_beta prefoldin, 53.8 1.8E+02 0.0039 26.6 11.6 19 533-551 15-33 (110)
402 TIGR02640 gas_vesic_GvpN gas v 53.7 10 0.00022 40.3 2.9 30 67-98 9-38 (262)
403 TIGR02902 spore_lonB ATP-depen 53.7 6.3 0.00014 46.4 1.3 44 46-98 60-103 (531)
404 COG1125 OpuBA ABC-type proline 53.6 5.6 0.00012 42.1 0.8 33 335-375 186-218 (309)
405 COG0419 SbcC ATPase involved i 53.6 5.7E+02 0.012 32.4 26.7 39 196-235 39-79 (908)
406 PF10205 KLRAQ: Predicted coil 53.5 1.1E+02 0.0024 27.9 8.8 57 571-631 2-62 (102)
407 PRK05703 flhF flagellar biosyn 53.5 5.7 0.00012 45.4 0.9 17 82-98 222-238 (424)
408 TIGR01843 type_I_hlyD type I s 53.4 3.6E+02 0.0079 30.1 25.0 31 735-765 251-282 (423)
409 PRK15455 PrkA family serine pr 53.4 26 0.00056 41.6 6.1 67 50-121 75-163 (644)
410 TIGR01069 mutS2 MutS2 family p 53.3 96 0.0021 38.4 11.4 31 731-762 694-725 (771)
411 PF05262 Borrelia_P83: Borreli 53.3 4.3E+02 0.0094 30.9 16.5 14 335-348 49-62 (489)
412 PF09731 Mitofilin: Mitochondr 53.3 4.6E+02 0.0099 31.2 22.2 10 140-149 27-36 (582)
413 PF07058 Myosin_HC-like: Myosi 53.0 3.4E+02 0.0073 29.6 14.6 121 379-546 35-161 (351)
414 PF02534 T4SS-DNA_transf: Type 52.9 9.9 0.00022 43.8 2.8 17 82-98 45-61 (469)
415 KOG2543 Origin recognition com 52.7 6.7 0.00015 43.7 1.3 41 80-143 29-69 (438)
416 PF00063 Myosin_head: Myosin h 52.6 8.5 0.00018 46.8 2.3 35 63-98 67-102 (689)
417 cd01850 CDC_Septin CDC/Septin. 52.3 6.8 0.00015 42.1 1.3 21 78-98 1-21 (276)
418 PRK06995 flhF flagellar biosyn 52.2 6.1 0.00013 45.8 0.9 17 82-98 257-273 (484)
419 PF07111 HCR: Alpha helical co 52.1 5.1E+02 0.011 31.5 33.9 158 538-695 474-651 (739)
420 PRK13342 recombination factor 52.1 8.6 0.00019 43.7 2.1 27 72-98 27-53 (413)
421 cd02021 GntK Gluconate kinase 52.1 6 0.00013 37.8 0.7 15 84-98 2-16 (150)
422 PF13851 GAS: Growth-arrest sp 52.0 2.8E+02 0.0061 28.4 21.5 97 578-688 62-158 (201)
423 COG1222 RPT1 ATP-dependent 26S 51.9 5.7 0.00012 43.9 0.5 120 8-128 93-246 (406)
424 TIGR03545 conserved hypothetic 51.8 1.6E+02 0.0035 35.0 12.5 10 576-585 196-205 (555)
425 PRK10865 protein disaggregatio 51.8 12 0.00027 46.6 3.5 42 50-97 567-614 (857)
426 PF13166 AAA_13: AAA domain 51.8 5.2E+02 0.011 31.4 24.5 68 530-599 317-384 (712)
427 PF10236 DAP3: Mitochondrial r 51.6 10 0.00022 41.5 2.5 27 72-98 14-40 (309)
428 PF13173 AAA_14: AAA domain 51.4 6.6 0.00014 36.7 0.8 16 83-98 4-19 (128)
429 PF06705 SF-assemblin: SF-asse 51.3 3.1E+02 0.0068 28.8 19.8 68 575-642 118-190 (247)
430 COG2256 MGS1 ATPase related to 51.3 7.7 0.00017 43.5 1.5 43 49-97 22-64 (436)
431 KOG1532 GTPase XAB1, interacts 51.0 11 0.00025 40.2 2.5 28 80-120 18-45 (366)
432 TIGR01359 UMP_CMP_kin_fam UMP- 50.9 6.7 0.00015 38.8 0.9 15 84-98 2-16 (183)
433 PF13904 DUF4207: Domain of un 50.9 3.4E+02 0.0073 29.0 14.4 17 638-654 134-150 (264)
434 TIGR03495 phage_LysB phage lys 50.9 1.6E+02 0.0034 28.3 10.0 40 604-643 59-98 (135)
435 TIGR01069 mutS2 MutS2 family p 50.8 3.5E+02 0.0075 33.7 15.6 27 611-637 545-571 (771)
436 PRK11634 ATP-dependent RNA hel 50.7 8.8 0.00019 46.2 2.0 25 72-98 36-60 (629)
437 PRK11281 hypothetical protein; 50.7 6.9E+02 0.015 32.5 27.3 244 490-756 55-311 (1113)
438 TIGR00376 DNA helicase, putati 50.7 9.6 0.00021 45.9 2.3 25 73-98 166-190 (637)
439 PRK00080 ruvB Holliday junctio 50.5 8.8 0.00019 42.1 1.8 17 82-98 52-68 (328)
440 PRK08476 F0F1 ATP synthase sub 50.5 2.4E+02 0.0051 27.1 12.3 72 570-641 58-132 (141)
441 PRK07261 topology modulation p 50.4 6.9 0.00015 38.8 0.9 15 84-98 3-17 (171)
442 KOG0735 AAA+-type ATPase [Post 50.2 9.4 0.0002 45.7 2.0 48 79-126 699-760 (952)
443 PRK09270 nucleoside triphospha 50.2 14 0.00031 38.2 3.2 36 63-98 14-50 (229)
444 PF15188 CCDC-167: Coiled-coil 49.8 90 0.002 27.5 7.5 13 647-659 56-68 (85)
445 TIGR03158 cas3_cyano CRISPR-as 49.7 10 0.00022 42.3 2.2 27 72-98 5-31 (357)
446 PRK00131 aroK shikimate kinase 49.7 7.5 0.00016 37.7 1.0 16 83-98 6-21 (175)
447 COG5019 CDC3 Septin family pro 49.7 9.1 0.0002 42.4 1.7 21 78-98 20-40 (373)
448 KOG4593 Mitotic checkpoint pro 49.6 5.6E+02 0.012 31.1 22.5 27 592-618 148-174 (716)
449 KOG0163 Myosin class VI heavy 49.5 5.8E+02 0.013 31.3 19.2 20 79-98 142-161 (1259)
450 PF04012 PspA_IM30: PspA/IM30 49.4 3.1E+02 0.0067 28.1 16.4 51 576-629 89-139 (221)
451 PF06745 KaiC: KaiC; InterPro 49.4 9.8 0.00021 39.1 1.8 26 72-97 7-35 (226)
452 PRK10416 signal recognition pa 49.4 15 0.00032 40.4 3.3 18 81-98 114-131 (318)
453 PRK08118 topology modulation p 49.2 7.4 0.00016 38.4 0.9 14 84-97 4-17 (167)
454 PF11932 DUF3450: Protein of u 48.8 3.5E+02 0.0075 28.5 17.1 31 611-641 86-119 (251)
455 PRK14961 DNA polymerase III su 48.7 13 0.00028 41.6 2.8 29 70-98 26-55 (363)
456 TIGR00635 ruvB Holliday juncti 48.6 12 0.00026 40.4 2.4 16 83-98 32-47 (305)
457 COG1126 GlnQ ABC-type polar am 48.6 7.9 0.00017 40.1 1.0 15 84-98 31-45 (240)
458 PRK06067 flagellar accessory p 48.5 12 0.00026 38.8 2.3 29 70-98 11-42 (234)
459 PRK13897 type IV secretion sys 48.4 16 0.00034 43.8 3.5 17 82-98 159-175 (606)
460 PRK11889 flhF flagellar biosyn 48.2 7.4 0.00016 44.0 0.8 17 82-98 242-258 (436)
461 CHL00176 ftsH cell division pr 48.2 8.1 0.00018 46.5 1.1 17 82-98 217-233 (638)
462 PF11068 YlqD: YlqD protein; 48.2 1.5E+02 0.0033 28.2 9.5 60 529-591 21-80 (131)
463 PF07693 KAP_NTPase: KAP famil 48.2 12 0.00026 40.5 2.4 30 69-98 8-37 (325)
464 PRK12726 flagellar biosynthesi 48.0 7.9 0.00017 43.5 0.9 17 82-98 207-223 (407)
465 KOG0340 ATP-dependent RNA heli 47.9 15 0.00033 40.5 2.9 28 71-100 36-63 (442)
466 CHL00081 chlI Mg-protoporyphyr 47.8 12 0.00025 41.8 2.2 44 46-98 12-55 (350)
467 TIGR01650 PD_CobS cobaltochela 47.7 13 0.00028 41.0 2.4 34 63-98 47-81 (327)
468 PF10412 TrwB_AAD_bind: Type I 47.5 7.4 0.00016 43.9 0.6 16 83-98 17-32 (386)
469 COG0630 VirB11 Type IV secreto 47.4 7.2 0.00016 42.7 0.5 18 81-98 143-160 (312)
470 PRK13822 conjugal transfer cou 47.3 15 0.00032 44.4 3.1 18 81-98 224-241 (641)
471 PRK09361 radB DNA repair and r 47.3 14 0.0003 38.0 2.5 29 70-98 9-40 (225)
472 KOG0239 Kinesin (KAR3 subfamil 47.2 6.2E+02 0.013 31.0 17.3 21 576-596 239-259 (670)
473 cd00464 SK Shikimate kinase (S 47.2 7.8 0.00017 36.9 0.7 16 83-98 1-16 (154)
474 TIGR02030 BchI-ChlI magnesium 47.1 9.9 0.00021 42.1 1.5 42 48-98 1-42 (337)
475 PLN00206 DEAD-box ATP-dependen 47.1 14 0.0003 43.4 2.8 25 72-98 151-175 (518)
476 CHL00181 cbbX CbbX; Provisiona 47.1 7.8 0.00017 41.9 0.7 15 84-98 62-76 (287)
477 PRK14721 flhF flagellar biosyn 47.1 8.4 0.00018 43.9 1.0 18 81-98 191-208 (420)
478 PF14282 FlxA: FlxA-like prote 47.0 83 0.0018 28.8 7.3 21 609-629 51-71 (106)
479 PRK04537 ATP-dependent RNA hel 47.0 12 0.00025 44.7 2.1 25 72-98 39-63 (572)
480 KOG0736 Peroxisome assembly fa 46.8 21 0.00046 43.2 4.2 23 105-127 784-806 (953)
481 KOG0979 Structural maintenance 46.8 7.2E+02 0.016 31.6 23.5 172 499-694 178-357 (1072)
482 TIGR02680 conserved hypothetic 46.7 8.5E+02 0.018 32.4 32.7 63 609-671 903-965 (1353)
483 cd01393 recA_like RecA is a b 46.7 14 0.00029 37.9 2.4 29 70-98 5-36 (226)
484 PRK14723 flhF flagellar biosyn 46.7 9.1 0.0002 46.7 1.2 17 82-98 186-202 (767)
485 PF15397 DUF4618: Domain of un 46.6 3.9E+02 0.0085 28.5 26.6 26 630-655 189-214 (258)
486 cd00820 PEPCK_HprK Phosphoenol 46.6 9.2 0.0002 35.1 1.0 17 82-98 16-32 (107)
487 PRK06696 uridine kinase; Valid 46.5 17 0.00036 37.6 3.0 30 69-98 7-39 (223)
488 cd01428 ADK Adenylate kinase ( 46.5 8.6 0.00019 38.2 0.9 15 84-98 2-16 (194)
489 KOG1803 DNA helicase [Replicat 46.5 10 0.00022 44.6 1.4 17 82-98 202-218 (649)
490 cd09238 V_Alix_like_1 Protein- 46.4 4E+02 0.0087 29.5 14.0 85 535-641 195-279 (339)
491 COG0606 Predicted ATPase with 46.2 8.1 0.00018 44.3 0.7 32 75-114 194-225 (490)
492 PRK01297 ATP-dependent RNA hel 46.0 12 0.00025 43.4 1.9 26 71-98 116-141 (475)
493 PRK13729 conjugal transfer pil 45.9 69 0.0015 36.9 7.9 20 575-594 101-120 (475)
494 TIGR02322 phosphon_PhnN phosph 45.9 8.8 0.00019 37.9 0.8 16 83-98 3-18 (179)
495 PF07926 TPR_MLP1_2: TPR/MLP1/ 45.9 2.7E+02 0.0058 26.4 18.2 97 581-695 20-117 (132)
496 PF09787 Golgin_A5: Golgin sub 45.9 5.6E+02 0.012 30.1 23.5 13 501-513 122-134 (511)
497 TIGR02880 cbbX_cfxQ probable R 45.9 8.3 0.00018 41.6 0.7 16 83-98 60-75 (284)
498 TIGR01241 FtsH_fam ATP-depende 45.7 8.2 0.00018 45.0 0.6 15 84-98 91-105 (495)
499 PTZ00419 valyl-tRNA synthetase 45.5 52 0.0011 42.0 7.7 69 533-602 927-995 (995)
500 TIGR01243 CDC48 AAA family ATP 45.5 8.6 0.00019 47.2 0.8 50 48-98 175-229 (733)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-127 Score=1094.22 Aligned_cols=695 Identities=45% Similarity=0.622 Sum_probs=611.5
Q ss_pred eCCCCcchhccCCceEEEEeCCCcceeeCc-eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCC
Q 004235 16 VRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGK 94 (766)
Q Consensus 16 vRP~~~~E~~~~~~~~~~v~~~~~~v~~~~-~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGK 94 (766)
|||+...|...||+.|+.+.++.|||.+|+ .+|+||+||++. ++|.++|+.||.|+++.+|.|||+||+|||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~-~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDL-ESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCc-hHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 699999999999999999999999999986 799999999875 459999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCc-ccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccccccCCCCCccccCCCC
Q 004235 95 TYTMGTGLREGFQ-TGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRP 173 (766)
Q Consensus 95 TyTm~g~~~~~~~-~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~ 173 (766)
|||||+++..... .|+|||++.+||..|..... ..|.|.|||+|||++.|+|||.|.. ...
T Consensus 80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~-----------------~~~ 141 (913)
T KOG0244|consen 80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSR-----------------LKA 141 (913)
T ss_pred eeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhh-----------------hhh
Confidence 9999998664444 59999999999999998644 8899999999999999999998643 234
Q ss_pred CceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccCCCCCCCCCCC
Q 004235 174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDED 253 (766)
Q Consensus 174 ~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~~~~~~~~~~ 253 (766)
++.+++ +.|++.+.|+|+++|.+..+++.+|..|...|++++|+||.+|||||+||||++++..+...
T Consensus 142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~----------- 209 (913)
T KOG0244|consen 142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK----------- 209 (913)
T ss_pred ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------
Confidence 688888 88999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCChhhhhhhhhcCC
Q 004235 254 MDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGG 333 (766)
Q Consensus 254 ~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSkLTrLLqdsLgG 333 (766)
...+++||||||||||||.++|+++|+|++||++||.||++|||||+||++.++ ++|||||||||||||||+|||
T Consensus 210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgG 284 (913)
T KOG0244|consen 210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGG 284 (913)
T ss_pred --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcC
Confidence 235789999999999999999999999999999999999999999999999875 679999999999999999999
Q ss_pred CceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHhHhhCCCChHHHHHHHHH
Q 004235 334 NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGR 413 (766)
Q Consensus 334 ns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~L~~~i~~l~~el~~~~~~~~~~~~~~l~~~ 413 (766)
|+.|+||+||||++.|+.||++||+||+||+.|+|+|+||.||....|..|+.||+.|+.+|+...|+....+++.|..+
T Consensus 285 ns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e 364 (913)
T KOG0244|consen 285 NSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFE 364 (913)
T ss_pred CcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998877778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCCc--------------------cccccchhhhhcccccCCchhhh
Q 004235 414 IAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPV--------------------SFVKSDGLKRGFQSIDSSDYQMD 473 (766)
Q Consensus 414 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 473 (766)
+..+++.+..+..+..+.+..+.....+...+..... ...+...|.+.++.+.+..+++.
T Consensus 365 ~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~ 444 (913)
T KOG0244|consen 365 NVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIG 444 (913)
T ss_pred hhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccccccccccccc
Confidence 9999999999999999988877554433332221100 00011123333444333212221
Q ss_pred hhhcC-CCChhHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 474 EAVSD-GNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQE 550 (766)
Q Consensus 474 ~~~~~-~~~~~~~~~~~e~e~~~~q~~l~~EL~eLnk~Le~KE~e~k~~~~--~~~~~~k~~ye~kl~eLe~ei~~lq~E 550 (766)
..... +++..-......++|+..|.+|+.|+.+++++|++||++++.+.. .....+++||+.++..|+.++..++.|
T Consensus 445 ~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E 524 (913)
T KOG0244|consen 445 MNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESE 524 (913)
T ss_pred ccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccc
Confidence 11110 111111122456899999999999999999999999999998875 456789999999999999999999999
Q ss_pred HHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 551 RDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (766)
Q Consensus 551 rd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~k 630 (766)
+++|+.++..... .+.++.++|++||+.||.++..|++++.+|.+|++.+.+++....+|..||..||.+||+|++
T Consensus 525 ~~~l~~el~~~~~----~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~ 600 (913)
T KOG0244|consen 525 RSRLRNELNVFNR----LAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR 600 (913)
T ss_pred cHHHHHHHHhhhH----HHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998743 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhcccC
Q 004235 631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA-RENSVN 709 (766)
Q Consensus 631 kmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~~k~~~-~~~~~~ 709 (766)
+|++|+++|+.||+..+||++||++++|++++++.++++.+++|..||+|||+||++++|||++++.+|+... .+....
T Consensus 601 ~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~~~~~ 680 (913)
T KOG0244|consen 601 VMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQVTLG 680 (913)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998874 222211
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 004235 710 STGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVYVSIL 757 (766)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~wv~~Ele~~~~~~e~~~~~e~~~~~r~~~~ 757 (766)
. ++ ...++...|+++|++|++.+++++++|+.++++||+++
T Consensus 681 ~---~~----~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~ 721 (913)
T KOG0244|consen 681 D---NG----ASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRM 721 (913)
T ss_pred h---cC----chhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 11 33578999999999999999999999999999999986
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-96 Score=836.25 Aligned_cols=393 Identities=40% Similarity=0.599 Sum_probs=342.9
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC-----ceeEEcceeeCCCCC------chhhhhhhhhHhHHHH
Q 004235 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-----THSFTFDHVYGNGGS------PSSAMFGECVAPLVDG 75 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~-----~~~F~FD~Vf~~~~s------~q~~vy~~~v~plV~~ 75 (766)
..+|+|+||||||+.+|....|+..|.+..+..++... ...|+|||+||+.++ +|..||+..+.|+++.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 45999999999999999988776445455444444332 257999999986542 5889999999999999
Q ss_pred HhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhcc-ccceeeEEeehhhhhcceeeeccC-Ccc
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLD-SVS 153 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DLL~-~~~ 153 (766)
+|+|||+||||||||||||||||.| +.+++++|||||++++||.+|.... .+..|.|.|||+|||||.|+|||+ |.+
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG-~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~ 161 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMG-FQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKS 161 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeec-cCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCC
Confidence 9999999999999999999999998 4467889999999999999998753 457899999999999999999998 432
Q ss_pred cccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEE
Q 004235 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (766)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~ 233 (766)
+++|++||+|-.|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||||.
T Consensus 162 ------------------kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIv 223 (1221)
T KOG0245|consen 162 ------------------KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIV 223 (1221)
T ss_pred ------------------CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhcc--CC
Q 004235 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK--RR 311 (766)
Q Consensus 234 v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~--~~ 311 (766)
+.|...... .......+|||+|||||||||+..||+.|+|+|||.+||+||++||.||+||++..+ .+
T Consensus 224 ftQk~~~~~----------~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ 293 (1221)
T KOG0245|consen 224 FTQKKHDQD----------TGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKK 293 (1221)
T ss_pred EEeeecccc----------CCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCC
Confidence 999764321 112345789999999999999999999999999999999999999999999998653 33
Q ss_pred CCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHH
Q 004235 312 EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYL 391 (766)
Q Consensus 312 ~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~L~~~i~~l 391 (766)
+..+||||||.|||||+++|||||+|+|||++||++.||+|||+|||||+|||.|+|+|+||+||....|++|+.||..|
T Consensus 294 ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rL 373 (1221)
T KOG0245|consen 294 KSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARL 373 (1221)
T ss_pred CCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhCCCC-----------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 392 QAELCARAGGAP-----------SDEVQVLKGRIAWLEATNEDLCQEL 428 (766)
Q Consensus 392 ~~el~~~~~~~~-----------~~~~~~l~~~~~~l~~~~~~l~~~l 428 (766)
+..|.....+.. ..++..+.++++.-|.....|.+..
T Consensus 374 ksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW 421 (1221)
T KOG0245|consen 374 KSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETW 421 (1221)
T ss_pred HHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876543321 3556777777776666666555443
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-95 Score=816.48 Aligned_cols=356 Identities=46% Similarity=0.690 Sum_probs=329.7
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee---------CceeEEcceeeCCCCCchhhhhhhhhHhHHHHHh
Q 004235 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~---------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l 77 (766)
+.+|+|+|||||+...+...++..++.+.+...++.+ .+++|+||+||+++++ |++||..++.|+|++|+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~st-Q~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDST-QDDVYQETVAPLVESVL 82 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCC-HHHHHHHHhHHHHHHHh
Confidence 4799999999999999999999999888877666655 2468999999998765 99999999999999999
Q ss_pred CCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~ 157 (766)
+|||+||||||||||||||||.|+ ++...|||||++.+||..|+.......|.|+|||+|||||.|+|||+|.+
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~---- 156 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN---- 156 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC----
Confidence 999999999999999999999997 47789999999999999999977667899999999999999999998854
Q ss_pred cccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEee
Q 004235 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (766)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~ 237 (766)
.+.+.|++++..|+||.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||||+|++.
T Consensus 157 --------------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~ 222 (574)
T KOG4280|consen 157 --------------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESS 222 (574)
T ss_pred --------------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEee
Confidence 257999999999999999999999999999999999999999999999999999999999999983
Q ss_pred eecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCccc
Q 004235 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (766)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vP 317 (766)
.+. .+.......|+|||||||||||.++|++.|.|++|+.+||+||++||+||++|+++++ .|||
T Consensus 223 ~~~-----------~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~----~HIP 287 (574)
T KOG4280|consen 223 EKS-----------DGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK----THIP 287 (574)
T ss_pred ccc-----------CCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc----CCCC
Confidence 321 1123456789999999999999999999999999999999999999999999999875 3999
Q ss_pred CCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHhH
Q 004235 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCA 397 (766)
Q Consensus 318 yRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~L~~~i~~l~~el~~ 397 (766)
|||||||+||||||||||+|+|||||||++++++||++||+||+||+.|+|+|+||.||..+.+..|+.+|+.|+.+|..
T Consensus 288 YRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~ 367 (574)
T KOG4280|consen 288 YRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDP 367 (574)
T ss_pred cchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred h
Q 004235 398 R 398 (766)
Q Consensus 398 ~ 398 (766)
.
T Consensus 368 ~ 368 (574)
T KOG4280|consen 368 G 368 (574)
T ss_pred c
Confidence 5
No 4
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-92 Score=816.66 Aligned_cols=397 Identities=40% Similarity=0.627 Sum_probs=335.0
Q ss_pred CCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC--------ceeEEcceeeCCCCCchhhhhhhhhHhHHHHHh
Q 004235 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (766)
Q Consensus 6 ~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~--------~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l 77 (766)
.+.+|+|+|||||++.+|....++..|.+.+....|.+. .+.|+||.||||.+ +|.+||+.+|.|+|+.|+
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes-~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPES-QQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcch-hHHHHHHHHHHHHHHHHh
Confidence 346999999999999999988888888877654434431 46899999999975 599999999999999999
Q ss_pred CCcCEEEEeecccCCCCccccCCCCC-----CCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCc
Q 004235 78 QGYNATVLAYGQTGSGKTYTMGTGLR-----EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm~g~~~-----~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~ 152 (766)
.|||||||||||||+||||||.|+.. .+...|||||++.+||+.++.. ..+|+|+|||+|+|||+|+|||+|.
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCc
Confidence 99999999999999999999988643 4678899999999999999984 4799999999999999999999986
Q ss_pred ccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEE
Q 004235 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (766)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti 232 (766)
.... ....+.+.+++. +..||++|.|+.++.|+++.|++.+|..|...|.+++|.||.+|||||+||+|
T Consensus 204 ~~~~--------~~~~~k~~~~~~---~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsI 272 (1041)
T KOG0243|consen 204 DTSD--------KKLRIKDDSTIV---DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSI 272 (1041)
T ss_pred cccc--------cccccccCCccc---CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEE
Confidence 5321 222233344443 67899999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCC
Q 004235 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (766)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~ 312 (766)
+|.-... + ..+.+-+.+|||+||||||||-..++||.+.|.+|++.||+||++||+||+||.+..
T Consensus 273 tvhike~---------t--~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s---- 337 (1041)
T KOG0243|consen 273 TVHIKEN---------T--PEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS---- 337 (1041)
T ss_pred EEEEecC---------C--CcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC----
Confidence 9976421 1 112345788999999999999999999999999999999999999999999999865
Q ss_pred CCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccc-hHHHHHHHHHHHHH
Q 004235 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLI-SSDMQKLRQQLKYL 391 (766)
Q Consensus 313 ~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~-~~~i~~L~~~i~~l 391 (766)
+|||||+|||||||||||||..+|+|||||||+..+++|||+||.||.||++|+|+|.+|+-.. ...++.|-.+|+.|
T Consensus 338 -~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerL 416 (1041)
T KOG0243|consen 338 -GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERL 416 (1041)
T ss_pred -CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999997654 34678999999999
Q ss_pred HHHHhHhh--CCCC-h--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 392 QAELCARA--GGAP-S--------DEVQVLKGRIAWLEATNEDLCQELHEYR 432 (766)
Q Consensus 392 ~~el~~~~--~~~~-~--------~~~~~l~~~~~~l~~~~~~l~~~l~~~~ 432 (766)
+.+|.+.. .|.. + .+.+...+.|..++.+.+.+..++..+.
T Consensus 417 K~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~ 468 (1041)
T KOG0243|consen 417 KRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLT 468 (1041)
T ss_pred HHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997653 3432 1 1233444455555555555555544444
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=7.4e-89 Score=741.16 Aligned_cols=338 Identities=43% Similarity=0.690 Sum_probs=313.2
Q ss_pred CCCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeCc----eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCc
Q 004235 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT----HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (766)
Q Consensus 5 ~~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~~----~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~ 80 (766)
++.|+|+|+||+||++..|...+......+.++...|.+++ .+|.||.||+|+++ |++||..++.|+|++||.||
T Consensus 4 ~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnat-Qe~Vy~~~a~~Iv~dVL~GY 82 (607)
T KOG0240|consen 4 SAECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNAT-QEDVYEFAAKPIVDDVLLGY 82 (607)
T ss_pred CCCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCcc-HHHHHHHHHHHHHHHHhccc
Confidence 35799999999999999999888776666666666777766 89999999999875 99999999999999999999
Q ss_pred CEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCccccccccc
Q 004235 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~ 160 (766)
|+||||||||||||||||.|...+....|||||++++||++|.......+|.|.|||||||.|+|+|||+|..
T Consensus 83 NGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k------- 155 (607)
T KOG0240|consen 83 NGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEK------- 155 (607)
T ss_pred ceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCccc-------
Confidence 9999999999999999999976666677999999999999999988889999999999999999999999753
Q ss_pred CCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeec
Q 004235 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (766)
Q Consensus 161 ~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~ 240 (766)
.++.|+||.+.+++|.|++++.|.++++++.++..|..+|+++.|+||.+|||||+||+|+|.|....
T Consensus 156 ------------~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e 223 (607)
T KOG0240|consen 156 ------------TNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVE 223 (607)
T ss_pred ------------CCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEecccc
Confidence 58999999999999999999999999999999999999999999999999999999999999995431
Q ss_pred ccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCC
Q 004235 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (766)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRd 320 (766)
+....+|+|.||||||||+++++|+.|.-+.|+.+||+||.|||+||+||+++.+ .||||||
T Consensus 224 --------------~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~----shipYRD 285 (607)
T KOG0240|consen 224 --------------DKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPK----SHIPYRD 285 (607)
T ss_pred --------------chhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCC----CCCcchh
Confidence 2457899999999999999999999999999999999999999999999999753 6999999
Q ss_pred ChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHH
Q 004235 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSD 380 (766)
Q Consensus 321 SkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~ 380 (766)
|||||||||||||||+|.+|.|+||+..|..||.+||+|++||+.|+|.+.+|......+
T Consensus 286 SKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~ 345 (607)
T KOG0240|consen 286 SKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEE 345 (607)
T ss_pred hHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHH
Confidence 999999999999999999999999999999999999999999999999999998655443
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.2e-86 Score=777.18 Aligned_cols=354 Identities=41% Similarity=0.620 Sum_probs=304.9
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeCceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEe
Q 004235 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~a 86 (766)
+++|+|+|||||++..|. +.. ++.... +..+.+..+.|+||+||+++++ |++||+.++.|+|+++|+|||+||||
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~-iV~~~s-~dsl~I~~qtFtFD~VFdp~aT-QedVFe~vv~PLV~svLdGyNaTIFA 171 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEM-IVQKMS-NDSLTINGQTFTFDSIADPEST-QEDIFQLVGAPLVENCLAGFNSSVFA 171 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCe-eEEEcC-CCeEEEeCcEEeCCeeeCCCCC-HHHHHHHHHHHHHHHHhcCCcceeec
Confidence 579999999999999863 333 333333 3456778899999999999865 89999999999999999999999999
Q ss_pred ecccCCCCccccCCCCC-------CCCcccchHHHHHHHHHHHHhc-----cccceeeEEeehhhhhcceeeeccCCccc
Q 004235 87 YGQTGSGKTYTMGTGLR-------EGFQTGLIPQVMNALFNKIETL-----RHQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (766)
Q Consensus 87 YGqTGSGKTyTm~g~~~-------~~~~~Giipr~~~~LF~~i~~~-----~~~~~~~v~vS~~EIynE~v~DLL~~~~~ 154 (766)
||||||||||||+|+.. .+..+|||||++++||..|... .....|.|+|||+|||||.|+|||+|..
T Consensus 172 YGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~- 250 (1320)
T PLN03188 172 YGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ- 250 (1320)
T ss_pred CCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc-
Confidence 99999999999999643 2457899999999999999753 2346799999999999999999998632
Q ss_pred ccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEE
Q 004235 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (766)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v 234 (766)
..+.|++++.+|++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 251 ------------------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~V 312 (1320)
T PLN03188 251 ------------------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVV 312 (1320)
T ss_pred ------------------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCC
Q 004235 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (766)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~ 314 (766)
++...... +.......|+|+|||||||||.+++++.|.+++|+++||+||++||+||.+|+.....++..
T Consensus 313 es~~k~~~----------dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~ 382 (1320)
T PLN03188 313 ESRCKSVA----------DGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQR 382 (1320)
T ss_pred EEeecccC----------CCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCC
Confidence 87543110 11224568999999999999999999999999999999999999999999999755444567
Q ss_pred cccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHH
Q 004235 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAE 394 (766)
Q Consensus 315 ~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~L~~~i~~l~~e 394 (766)
||||||||||+||||+|||||+|+|||||||+..+++||++||+||+||+.|+|+|++|.... ..+..|+..|..|+.|
T Consensus 383 HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~-~~vn~LrelIr~Lk~E 461 (1320)
T PLN03188 383 HIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQ-DDVNFLREVIRQLRDE 461 (1320)
T ss_pred cCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchh-hhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998643 2333444444444444
Q ss_pred H
Q 004235 395 L 395 (766)
Q Consensus 395 l 395 (766)
|
T Consensus 462 L 462 (1320)
T PLN03188 462 L 462 (1320)
T ss_pred H
Confidence 4
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.9e-84 Score=719.27 Aligned_cols=362 Identities=42% Similarity=0.628 Sum_probs=321.4
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-----------CceeEEcceeeCCCC------Cchhhhhhhhh
Q 004235 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNGG------SPSSAMFGECV 69 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~-----------~~~~F~FD~Vf~~~~------s~q~~vy~~~v 69 (766)
+..|+|+|||||++.+|........+.|..+...+.+ ++++|.||++|++.+ +.|+.||+...
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 3589999999999999987776655556544433322 357999999998753 34899999999
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhcc-ccceeeEEeehhhhhcceeeec
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDL 148 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DL 148 (766)
..+|+++|+|||+||||||||||||||||.|. ..++|||||++..||..|.... +...|.|.|||+|||||+++||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt---~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGT---AEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeecc---CCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 99999999999999999999999999999884 4579999999999999998753 3467999999999999999999
Q ss_pred cCCcccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEE
Q 004235 149 LDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHA 228 (766)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~ 228 (766)
|+|... +..+++++++--|+||.||++..|+|++|+-.+|..|+++|+++.|+||..|||||+
T Consensus 160 LdPk~s-----------------sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHa 222 (1714)
T KOG0241|consen 160 LDPKGS-----------------SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHA 222 (1714)
T ss_pred hCCCCC-----------------cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccce
Confidence 998652 357999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhc
Q 004235 229 IFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEK 308 (766)
Q Consensus 229 Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~ 308 (766)
+|.|.|.|+-.. +.++. .-...|+|.|||||||||+.+||+.|.|++||.+||+||++||.||++|++.+
T Consensus 223 VFslvvtQ~l~D----~ktg~------SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~ 292 (1714)
T KOG0241|consen 223 VFSLVVTQTLYD----LKTGH------SGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQK 292 (1714)
T ss_pred eEEEEEeeEEec----cccCc------chhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhh
Confidence 999999986431 11111 12357999999999999999999999999999999999999999999999865
Q ss_pred cC-CCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHH
Q 004235 309 KR-REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQ 387 (766)
Q Consensus 309 ~~-~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~L~~~ 387 (766)
.. ++..+||||||.||+||+|+|||||+|+||+||||+.+||+|||+|||||+|||+|+|.++||.||....|+.||.+
T Consensus 293 n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReE 372 (1714)
T KOG0241|consen 293 NGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREE 372 (1714)
T ss_pred cCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHH
Confidence 43 24679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHh
Q 004235 388 LKYLQAELCAR 398 (766)
Q Consensus 388 i~~l~~el~~~ 398 (766)
++.|+..|...
T Consensus 373 ve~lr~qL~~a 383 (1714)
T KOG0241|consen 373 VEKLREQLEQA 383 (1714)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 8
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.5e-84 Score=749.93 Aligned_cols=352 Identities=45% Similarity=0.678 Sum_probs=307.6
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee----------CceeEEcceeeCCCCCchhhhhhhhhHhHHHHH
Q 004235 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI----------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~----------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~ 76 (766)
...|.|+|||||+++++...+ ..|.....+++.+.. ....|.||+||+++++ |.+||+.+++|+|++|
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t-~~~VYe~~tkpiv~~~ 82 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARG-DRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEEST-QEDVYERTTKPLLLSV 82 (675)
T ss_pred cceeEEEEEeCCCCccccccC-CccceEecCCceeEeeccccccccccccceeeeeecCCCCC-HHHHHHhccHHHHHHH
Confidence 468999999999999854333 223222222222111 0378999999999876 8999999999999999
Q ss_pred hCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCccccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~ 156 (766)
+.|||+||||||||||||||||.|. ..+|||||.++.+||+.|.... ..+|.|.|||+|||||.|+|||+|..
T Consensus 83 l~G~N~TVFAYG~TgSGKTyTM~G~---~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~--- 155 (675)
T KOG0242|consen 83 LEGFNATVFAYGQTGSGKTYTMSGS---EDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG--- 155 (675)
T ss_pred hcCcccceeeecCCCCCCceEEecc---CCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC---
Confidence 9999999999999999999999884 4569999999999999999865 78999999999999999999998753
Q ss_pred ccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEe
Q 004235 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (766)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q 236 (766)
+++.|+||+.+|++|+||++..|.|+++++.+|..|..+|+++.|++|..|||||+||+|.|.+
T Consensus 156 ----------------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s 219 (675)
T KOG0242|consen 156 ----------------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVES 219 (675)
T ss_pred ----------------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEe
Confidence 4699999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcc
Q 004235 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (766)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~v 316 (766)
..+... . ..|+|+|||||||||+.+|++.|.|++||.+||+||++||+||++|+++.. ..||
T Consensus 220 ~~~~~~--------------~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~---~~hi 281 (675)
T KOG0242|consen 220 RGREAS--------------S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKR---PRHI 281 (675)
T ss_pred cccccc--------------c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccc---cCCC
Confidence 643210 1 678999999999999999999999999999999999999999999998754 2399
Q ss_pred cCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchH-HHHHHHHHHHHHHHHH
Q 004235 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISS-DMQKLRQQLKYLQAEL 395 (766)
Q Consensus 317 PyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~-~i~~L~~~i~~l~~el 395 (766)
||||||||||||++|||||+|+|||||+|+..+++||.+||+||+||++|++++.+|.-.... .+..++.++..|+.++
T Consensus 282 pYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~ 361 (675)
T KOG0242|consen 282 PYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAEL 361 (675)
T ss_pred CccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999755544 3455568888888888
Q ss_pred hHhhCC
Q 004235 396 CARAGG 401 (766)
Q Consensus 396 ~~~~~~ 401 (766)
......
T Consensus 362 ~~~~~~ 367 (675)
T KOG0242|consen 362 ERLKKK 367 (675)
T ss_pred Hhhccc
Confidence 664433
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=6.4e-83 Score=697.50 Aligned_cols=325 Identities=42% Similarity=0.604 Sum_probs=290.0
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC--ceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEe
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~--~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~a 86 (766)
+|+|+|||||+...|...+...|+.+..+...+..+ .+.|.||+||+++++ |++||+.++.|+|+++|+|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~p~v~~~~~G~n~ti~a 80 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTN-QEDVFQSVGKPLVEDCLSGYNGSIFA 80 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCC-HHHHHHHHHHHHHHHHhCCCceeEEE
Confidence 799999999999999877778888776554444333 379999999999865 89999999999999999999999999
Q ss_pred ecccCCCCccccCCCCCC-----CCcccchHHHHHHHHHHHHhc----cccceeeEEeehhhhhcceeeeccCCcccccc
Q 004235 87 YGQTGSGKTYTMGTGLRE-----GFQTGLIPQVMNALFNKIETL----RHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (766)
Q Consensus 87 YGqTGSGKTyTm~g~~~~-----~~~~Giipr~~~~LF~~i~~~----~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~ 157 (766)
||||||||||||+|+... ...+|||||++++||..+... .....|.|+|||+|||||+|+|||+|..
T Consensus 81 YGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~---- 156 (337)
T cd01373 81 YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS---- 156 (337)
T ss_pred eCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC----
Confidence 999999999999997643 247899999999999998754 2346799999999999999999997632
Q ss_pred cccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEee
Q 004235 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (766)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~ 237 (766)
..+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 157 ---------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 221 (337)
T cd01373 157 ---------------RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESW 221 (337)
T ss_pred ---------------CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999875
Q ss_pred eecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCccc
Q 004235 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (766)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vP 317 (766)
.... .......|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|++.... ...|||
T Consensus 222 ~~~~------------~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~-~~~~ip 288 (337)
T cd01373 222 EKKA------------SSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG-KQRHVP 288 (337)
T ss_pred ecCC------------CCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC-CCCccC
Confidence 4311 112456799999999999999999999999999999999999999999999875432 257999
Q ss_pred CCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 318 yRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
|||||||+||+|+|||||+|+|||||||+..+++||++||+||+||+.|
T Consensus 289 yR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 289 YRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.9e-82 Score=694.01 Aligned_cols=322 Identities=47% Similarity=0.694 Sum_probs=292.7
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCccee----------------eCceeEEcceeeCCCCCchhhhhhhhhHhH
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ----------------IGTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~----------------~~~~~F~FD~Vf~~~~s~q~~vy~~~v~pl 72 (766)
+|+|+|||||+...|...+...|+.+.++...+. ...+.|+||+||+++++ |++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~-q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETST-QEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCC-HHHHHHHHHHHH
Confidence 5999999999999999899999998766432111 12478999999999865 899999999999
Q ss_pred HHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~ 152 (766)
|+++++|||+||||||||||||||||+|+. ..+|||||++++||+.++.......|.|+|||+|||||.|+|||++.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTD---SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCC---CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC
Confidence 999999999999999999999999998854 56999999999999999987767899999999999999999999763
Q ss_pred ccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEE
Q 004235 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (766)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti 232 (766)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|
T Consensus 157 -------------------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i 217 (338)
T cd01370 157 -------------------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQI 217 (338)
T ss_pred -------------------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEE
Confidence 2478999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCC
Q 004235 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (766)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~ 312 (766)
+|.+..... +.......|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+...+ .
T Consensus 218 ~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~ 284 (338)
T cd01370 218 TVRQKDRTA-----------SINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK--K 284 (338)
T ss_pred EEEEEecCC-----------CCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC--C
Confidence 999865321 123456789999999999999999999999999999999999999999999998753 3
Q ss_pred CCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 313 ~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 285 ~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 285 NKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 469999999999999999999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.9e-80 Score=677.24 Aligned_cols=326 Identities=36% Similarity=0.591 Sum_probs=287.7
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-----------------CceeEEcceeeCCCCCchhhhhhhhhHh
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~-----------------~~~~F~FD~Vf~~~~s~q~~vy~~~v~p 71 (766)
+|+|+|||||+...|...+...|+.+.++. .+.+ ..+.|.||+||+++++ |++||+.++.|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~t-q~~vy~~~~~p 79 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINST-TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTT-QKEFFEGTALP 79 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCC-EEEEeCCccccccccccccCCCceEeecCeEECCCCC-HHHHHHHHHHH
Confidence 799999999999999877778888765443 2222 2468999999999865 89999999999
Q ss_pred HHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCC
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~ 151 (766)
+|+++++|||+||||||||||||||||+|+. ..+|||||++++||+.+.. |.|.|||+|||||.|+|||++
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~---~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP---GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCC
Confidence 9999999999999999999999999999854 5799999999999999876 999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEE
Q 004235 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 231 (766)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ift 231 (766)
.... .....++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+
T Consensus 151 ~~~~-------------~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~ 217 (345)
T cd01368 151 SPSS-------------TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFT 217 (345)
T ss_pred cccc-------------ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEE
Confidence 5421 012357999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCC
Q 004235 232 ITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRR 311 (766)
Q Consensus 232 i~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~ 311 (766)
|+|.+...... +. ..........|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+......
T Consensus 218 i~v~~~~~~~~-----~~-~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~ 291 (345)
T cd01368 218 IKLVQAPGDSD-----GD-VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSG 291 (345)
T ss_pred EEEEEeccCcc-----cc-cccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 99998643211 00 1112345678999999999999999999999999999999999999999999999865433
Q ss_pred -CCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhc
Q 004235 312 -EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (766)
Q Consensus 312 -~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar 364 (766)
...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 292 ~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 292 STNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=9.2e-80 Score=678.01 Aligned_cols=336 Identities=45% Similarity=0.672 Sum_probs=299.2
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceee---------CceeEEcceeeCCC-------CCchhhhhhhhhHh
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNG-------GSPSSAMFGECVAP 71 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~---------~~~~F~FD~Vf~~~-------~s~q~~vy~~~v~p 71 (766)
.+|+|+|||||+...|...+...|+.+.+....+.. ....|+||+||++. ++ |++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~t-q~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYAS-QEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCC-HHHHHHHHHHH
Confidence 379999999999999998888888877663322222 23689999999986 54 89999999999
Q ss_pred HHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccc-cceeeEEeehhhhhcceeeeccC
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLD 150 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~ 150 (766)
+|+.+++|||+||||||||||||||||+|+.. .+|||||++++||+.+..... ...|.|+|||+|||||.|+|||+
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~---~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~ 156 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLN 156 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCC
Confidence 99999999999999999999999999998643 689999999999999987544 57899999999999999999998
Q ss_pred CcccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEE
Q 004235 151 SVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (766)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~If 230 (766)
+.. ....++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||
T Consensus 157 ~~~----------------~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~ 220 (356)
T cd01365 157 PKK----------------KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVF 220 (356)
T ss_pred CCc----------------cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEE
Confidence 743 1235789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccC
Q 004235 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKR 310 (766)
Q Consensus 231 ti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~ 310 (766)
+|+|.+...... ........|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.....
T Consensus 221 ~l~v~~~~~~~~----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~ 290 (356)
T cd01365 221 TIVLTQKKLDKE----------TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSA 290 (356)
T ss_pred EEEEEEEecccC----------CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 999998643211 1123567899999999999999999999999999999999999999999999976532
Q ss_pred ---CCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 004235 311 ---REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (766)
Q Consensus 311 ---~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn 373 (766)
+...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|+|.|++|
T Consensus 291 ~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 291 KSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 245799999999999999999999999999999999999999999999999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.3e-79 Score=676.34 Aligned_cols=333 Identities=44% Similarity=0.694 Sum_probs=301.9
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceee--------CceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCC
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~--------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G 79 (766)
++|+|+|||||+...|...++..++.+.....+|.+ ..+.|+||+||+++++ |++||+.++.|+|+.+++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~-q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEAD-QIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCC-HHHHHHHHHHHHHHHHhCC
Confidence 589999999999999988888888888776666655 3478999999999865 9999999999999999999
Q ss_pred cCEEEEeecccCCCCccccCCCCCC--------CCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCC
Q 004235 80 YNATVLAYGQTGSGKTYTMGTGLRE--------GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm~g~~~~--------~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~ 151 (766)
||+||||||||||||||||+|+... ...+|||||++++||+.+... ...|.|+|||+|||||.|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997654 456899999999999999874 678999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceeeeC--CCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEE
Q 004235 152 VSVSKSVTANGHAGKVSISGRPPIQIRES--SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (766)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~ire~--~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~I 229 (766)
.. ....++.|+++ +.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+|
T Consensus 159 ~~----------------~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i 222 (352)
T cd01364 159 ES----------------DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSI 222 (352)
T ss_pred cc----------------ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceE
Confidence 43 12458999999 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhcc
Q 004235 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK 309 (766)
Q Consensus 230 fti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~ 309 (766)
|+|+|.+..... ........|+|+|||||||||.+++++.|.+++|+..||+||++|++||.+|+...
T Consensus 223 ~~i~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~- 290 (352)
T cd01364 223 FSITIHIKETTI-----------SGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS- 290 (352)
T ss_pred EEEEEEEeccCC-----------CCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-
Confidence 999999854211 11223467999999999999999999999999999999999999999999998754
Q ss_pred CCCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 004235 310 RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (766)
Q Consensus 310 ~~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d 375 (766)
.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|+|+|++|.|
T Consensus 291 ----~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 291 ----PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred ----CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 49999999999999999999999999999999999999999999999999999999999975
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.1e-79 Score=672.26 Aligned_cols=337 Identities=64% Similarity=0.967 Sum_probs=305.9
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC-ceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEe
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~-~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~a 86 (766)
++|+|+||+||+...|...++..|+.+.++.+++.++ .+.|+||+||+++++ |++||+.++.|+|+.+|+|||+||||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTS-QEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCC-HHHHHHHHHHHHHHHHhCCCccceee
Confidence 4899999999999999999999999999999999888 589999999999765 99999999999999999999999999
Q ss_pred ecccCCCCccccCCCCCC---CCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccccccCCC
Q 004235 87 YGQTGSGKTYTMGTGLRE---GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (766)
Q Consensus 87 YGqTGSGKTyTm~g~~~~---~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~ 163 (766)
||||||||||||+|+... ...+|||||++++||+.++......+|.|.|||+|||||.|+|||.+..
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---------- 149 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST---------- 149 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc----------
Confidence 999999999999987542 5689999999999999999876668999999999999999999998743
Q ss_pred CCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccC
Q 004235 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (766)
Q Consensus 164 ~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~ 243 (766)
...+++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.......
T Consensus 150 ------~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~ 223 (341)
T cd01372 150 ------SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPI 223 (341)
T ss_pred ------cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcc
Confidence 12358999999999999999999999999999999999999999999999999999999999999987643110
Q ss_pred CCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCChh
Q 004235 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (766)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSkL 323 (766)
. ....+.......|+|+||||||||+.+++++.|.+++|+.+||+||++|++||.+|+...+ +..|||||||||
T Consensus 224 ~----~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~--~~~~ipyR~S~L 297 (341)
T cd01372 224 A----PMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK--KGSHVPYRDSKL 297 (341)
T ss_pred c----cccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCCCCcccHH
Confidence 0 0111233457889999999999999999999999999999999999999999999997653 346999999999
Q ss_pred hhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccc
Q 004235 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQ 367 (766)
Q Consensus 324 TrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ik 367 (766)
|+||+|+|||||+|+||+||||+..+++||++||+||+|||+||
T Consensus 298 T~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 298 TRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999996
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=9.8e-78 Score=656.22 Aligned_cols=323 Identities=48% Similarity=0.712 Sum_probs=293.8
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC---------ceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCC
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~---------~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G 79 (766)
+|+|+|||||+...|...++..++.+.++..+|.+. .+.|+||+||+++++ |++||+.++.|+|+++++|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~-q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNST-QEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCcc-HHHHHHHHHHHHHHHHhCC
Confidence 799999999999999988888888887766665542 367999999999865 8999999999999999999
Q ss_pred cCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccccc
Q 004235 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~ 159 (766)
||+||||||||||||||||+|+......+|||||++++||..+.... ...|.|.|||+|||||.|+|||++..
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~------ 153 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE-NVQFLVRVSYLEIYNEEVRDLLGKDQ------ 153 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc-CccEEEEEEEEEeeCCeeeeCCCCCC------
Confidence 99999999999999999999987767789999999999999998754 47899999999999999999997632
Q ss_pred cCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeee
Q 004235 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (766)
Q Consensus 160 ~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~ 239 (766)
..++.|++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|++...
T Consensus 154 ------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 221 (333)
T cd01371 154 ------------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEK 221 (333)
T ss_pred ------------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEec
Confidence 24689999999999999999999999999999999999999999999999999999999999998643
Q ss_pred cccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCC
Q 004235 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (766)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyR 319 (766)
.. +.......|+|+|||||||||..++++.|.+++|+.+||+||.+|++||.+|++++ ..|||||
T Consensus 222 ~~-----------~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~----~~~ipyR 286 (333)
T cd01371 222 GE-----------DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK----STHIPYR 286 (333)
T ss_pred cC-----------CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC----CCcCCCc
Confidence 21 11234668999999999999999999999999999999999999999999998754 2599999
Q ss_pred CChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 320 dSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
|||||+||+|+|||||+|+||+||||+..+++||++||+||+|||.|
T Consensus 287 ~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 287 DSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999987
No 16
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=6.8e-78 Score=654.28 Aligned_cols=307 Identities=42% Similarity=0.623 Sum_probs=278.3
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-------------CceeEEcceeeCCCCCchhhhhhhhhHhHHHH
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~-------------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~ 75 (766)
+|+|+|||||+.+.|...+...++.+.++ ..+.+ ..+.|+||+||+++++ |++||+.++.|+|+.
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vf~~~~~plv~~ 79 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVT-NEEVYRSTVKPLIPH 79 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCC-HHHHHHHHHHHHHHH
Confidence 79999999999999987776666665544 22222 1478999999999865 899999999999999
Q ss_pred HhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccc
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~ 155 (766)
+++|||+||||||||||||||||+|+. ..+|||||++++||+.++... ..|.|+|||+|||||.|+|||++.
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--- 151 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDE---NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDR--- 151 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcC---CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCc---
Confidence 999999999999999999999999854 568999999999999998754 689999999999999999999762
Q ss_pred cccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEE
Q 004235 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (766)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~ 235 (766)
+++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.
T Consensus 152 -----------------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~ 214 (322)
T cd01367 152 -----------------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILK 214 (322)
T ss_pred -----------------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEE
Confidence 478999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccC-CCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCC
Q 004235 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTG-SDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (766)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~ 314 (766)
+... ....|+|+|||||||||...++ ..|.+++|+.+||+||++|++||.+|+.+. .
T Consensus 215 ~~~~-----------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-----~ 272 (322)
T cd01367 215 NKKL-----------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-----A 272 (322)
T ss_pred EecC-----------------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-----C
Confidence 7432 3467999999999999998765 578999999999999999999999998764 4
Q ss_pred cccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhc
Q 004235 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (766)
Q Consensus 315 ~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar 364 (766)
||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|+|
T Consensus 273 ~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 273 HVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred cCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999986
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.9e-77 Score=652.53 Aligned_cols=320 Identities=44% Similarity=0.708 Sum_probs=294.6
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC----ceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEE
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~----~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~t 83 (766)
.+|+|+|||||+...|...+...|+.+.++ .+|.+. .+.|.||+||+++++ |++||+.++.|+|+.+++|||+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~~~v~~~~~G~n~~ 79 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNTT-QEDVYNFVAKPIVDDVLNGYNGT 79 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCCC-HHHHHHHHHHHHHHHHHcCccce
Confidence 489999999999999987788888887665 456554 579999999999865 89999999999999999999999
Q ss_pred EEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccccccCCC
Q 004235 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (766)
Q Consensus 84 I~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~ 163 (766)
|||||||||||||||+|+......+|||||++++||+.+.......+|.|+|||+|||||.|+|||++..
T Consensus 80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~---------- 149 (325)
T cd01369 80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSK---------- 149 (325)
T ss_pred EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCcc----------
Confidence 9999999999999999987766789999999999999999877778899999999999999999998642
Q ss_pred CCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccC
Q 004235 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (766)
Q Consensus 164 ~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~ 243 (766)
..+.+++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 150 ---------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~--- 217 (325)
T cd01369 150 ---------DNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE--- 217 (325)
T ss_pred ---------CCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC---
Confidence 46889999999999999999999999999999999999999999999999999999999999875421
Q ss_pred CCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCChh
Q 004235 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (766)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSkL 323 (766)
......|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.+.+ .|||||||+|
T Consensus 218 -----------~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~----~~vpyR~S~L 282 (325)
T cd01369 218 -----------TGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS----THIPYRDSKL 282 (325)
T ss_pred -----------CCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC----CcCCCccCHH
Confidence 1235789999999999999999999999999999999999999999999997642 5999999999
Q ss_pred hhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 324 TrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
|+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 283 T~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 283 TRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2e-76 Score=642.19 Aligned_cols=308 Identities=39% Similarity=0.617 Sum_probs=278.5
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCc----ceee-------CceeEEcceeeCCCCCchhhhhhhhhHhHHHHHh
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP----QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~----~v~~-------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l 77 (766)
+|+|+|||||+.+.|. +...|+.+.++++ .+.+ ..+.|.||+||+++++ |++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECT-QEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCC-HHHHHHHHHHHHHHHHh
Confidence 5899999999999883 4456776655432 3333 2368999999999865 99999999999999999
Q ss_pred CCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~ 157 (766)
+|||+||||||||||||||||+|+. ..+|||||++++||+.++.. ...|.|+|||+|||||.|+|||++..
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~---~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~---- 148 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDP---NEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAK---- 148 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCc---CccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCC----
Confidence 9999999999999999999999864 46899999999999998764 47899999999999999999998642
Q ss_pred cccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEee
Q 004235 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (766)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~ 237 (766)
..+.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|.|.+.
T Consensus 149 ---------------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 213 (319)
T cd01376 149 ---------------KELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQP 213 (319)
T ss_pred ---------------CCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999875
Q ss_pred eecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCccc
Q 004235 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (766)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vP 317 (766)
.. .....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+.+. .|||
T Consensus 214 ~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-----~~ip 272 (319)
T cd01376 214 AS----------------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-----PRIP 272 (319)
T ss_pred CC----------------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-----CcCC
Confidence 32 12568999999999999999999999999999999999999999999998653 5999
Q ss_pred CCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhc
Q 004235 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (766)
Q Consensus 318 yRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar 364 (766)
||||+||+||+|+|||||+|+||+||||+..+++|||+||+||+|||
T Consensus 273 yr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 273 YRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999986
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6.5e-76 Score=639.21 Aligned_cols=317 Identities=41% Similarity=0.676 Sum_probs=284.8
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC----ceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEE
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATV 84 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~----~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI 84 (766)
+|+|+||+||+...|. .+...++.+..+ ..+.+. ...|+||+||+++++ |++||+.++.|+|+.+++|||+||
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~~~~~~f~fd~vf~~~~~-q~~vy~~~~~p~v~~~l~G~n~~i 77 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDND-NTISLEESTPGQSFTFDRVFGGEST-NREVYERIAKPVVRSALEGYNGTI 77 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCC-CEEEEcCCCCCeEEecCeEECCCCC-HHHHHHHHHHHHHHHHHCCCceeE
Confidence 5999999999999987 344555655555 344432 589999999999865 899999999999999999999999
Q ss_pred EeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccccccCCCC
Q 004235 85 LAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHA 164 (766)
Q Consensus 85 ~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~ 164 (766)
||||||||||||||+|+. ..+|||||++++||..+.... ...|.|+|||+|||||.|+|||+|..
T Consensus 78 ~ayG~tgSGKT~T~~G~~---~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~----------- 142 (321)
T cd01374 78 FAYGQTSSGKTFTMSGDE---QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP----------- 142 (321)
T ss_pred EeecCCCCCCceeccCCC---CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC-----------
Confidence 999999999999998854 568999999999999998753 67899999999999999999998742
Q ss_pred CccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccCC
Q 004235 165 GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVS 244 (766)
Q Consensus 165 ~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~ 244 (766)
.++.+++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.....
T Consensus 143 --------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--- 211 (321)
T cd01374 143 --------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD--- 211 (321)
T ss_pred --------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC---
Confidence 478999999999999999999999999999999999999999999999999999999999999854321
Q ss_pred CCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCChhh
Q 004235 245 PDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLT 324 (766)
Q Consensus 245 ~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSkLT 324 (766)
+.......|+|+|||||||||..+.+ .|.+++|+.+||+||++|++||.+|+.+.+ ..||||||||||
T Consensus 212 --------~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~---~~~vpyR~SkLT 279 (321)
T cd01374 212 --------SESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN---SGHIPYRDSKLT 279 (321)
T ss_pred --------CCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC---CCcCCCcCCHHH
Confidence 12245678999999999999999998 899999999999999999999999998652 359999999999
Q ss_pred hhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 325 RLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 325 rLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
+||+|+|||||+|+|||||||...+++||++||+||+||++|
T Consensus 280 ~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 280 RILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=7.7e-76 Score=641.25 Aligned_cols=319 Identities=39% Similarity=0.588 Sum_probs=280.4
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceee---------------CceeEEcceeeCCCCCchhhhhhhhhHhHH
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~---------------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV 73 (766)
+|+|+||+||+...+. .++.+.+.+.++.+ ..+.|+||+||++ + +|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~-~q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-A-SQEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-C-CHHHHHHHHHHHHH
Confidence 5999999999988543 12333333222111 2368999999998 5 49999999999999
Q ss_pred HHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcc
Q 004235 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (766)
Q Consensus 74 ~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~ 153 (766)
+.+|+|||+||||||||||||||||+|+..+...+|||||++++||+.++.. ....|.|+|||+|||||.|+|||++..
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~ 152 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTP 152 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCc
Confidence 9999999999999999999999999997665668999999999999999874 467899999999999999999998754
Q ss_pred cccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEE
Q 004235 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (766)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~ 233 (766)
.. ....+++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+
T Consensus 153 ~~-------------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~ 219 (334)
T cd01375 153 EA-------------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIH 219 (334)
T ss_pred cc-------------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEE
Confidence 21 12346899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCC
Q 004235 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREG 313 (766)
Q Consensus 234 v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~ 313 (766)
|.+.... +.+.....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.+. .
T Consensus 220 v~~~~~~------------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~----~ 283 (334)
T cd01375 220 LESRSRE------------AGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA----R 283 (334)
T ss_pred EEEEecC------------CCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC----C
Confidence 9986431 11235678999999999999999999999999999999999999999999999765 3
Q ss_pred CcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhc
Q 004235 314 VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (766)
Q Consensus 314 ~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar 364 (766)
.||||||||||+||+|+|||||+|+||+||||+..+++|||+||+||+|++
T Consensus 284 ~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 284 THVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999999999999985
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.1e-73 Score=624.19 Aligned_cols=321 Identities=42% Similarity=0.668 Sum_probs=288.0
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCC-cceeeC-----ceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcC
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGN-PQVQIG-----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN 81 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~-~~v~~~-----~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N 81 (766)
++|+|+|||||+...|. .....++.+.++. ..+.+. .+.|+||+||+++++ |++||+. +.|+|+++++|||
T Consensus 2 ~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~-q~~v~~~-v~p~v~~~~~G~~ 78 (329)
T cd01366 2 GNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDAS-QEDVFEE-VSPLVQSALDGYN 78 (329)
T ss_pred CCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCC-HHHHHHH-HHHHHHHHhCCCc
Confidence 68999999999999886 3344566666653 344432 368999999998765 8999997 6999999999999
Q ss_pred EEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccc-cceeeEEeehhhhhcceeeeccCCccccccccc
Q 004235 82 ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~ 160 (766)
+||||||+|||||||||+|+. ..+|||||++++||+.+..... ...|.|.|||+|||||.|+|||++..
T Consensus 79 ~~i~ayG~tgSGKT~tl~G~~---~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~------- 148 (329)
T cd01366 79 VCIFAYGQTGSGKTYTMEGPP---ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP------- 148 (329)
T ss_pred eEEEEeCCCCCCCcEEecCCC---CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc-------
Confidence 999999999999999999854 6689999999999999988654 67899999999999999999998743
Q ss_pred CCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeec
Q 004235 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (766)
Q Consensus 161 ~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~ 240 (766)
...+++.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 ---------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~ 219 (329)
T cd01366 149 ---------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ 219 (329)
T ss_pred ---------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC
Confidence 12468999999999999999999999999999999999999999999999999999999999999875421
Q ss_pred ccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCC
Q 004235 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (766)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRd 320 (766)
+.....|+|+||||||||+..++++.|.+++|+.+||+||++|++||.+|+.+ ..||||||
T Consensus 220 --------------~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-----~~~ipyr~ 280 (329)
T cd01366 220 --------------TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-----DSHVPYRN 280 (329)
T ss_pred --------------CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-----CCcCCCcc
Confidence 23467899999999999999999999999999999999999999999999875 35999999
Q ss_pred ChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccc
Q 004235 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNK 369 (766)
Q Consensus 321 SkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~ 369 (766)
||||+||+|+|||||+|+||+||||...+++||++||+||+||+.|+|.
T Consensus 281 S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 281 SKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred cHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999873
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.9e-73 Score=623.92 Aligned_cols=327 Identities=49% Similarity=0.759 Sum_probs=298.9
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCc-ceee-------CceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCc
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP-QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~-~v~~-------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~ 80 (766)
+|+|+|||||+...|...+...|+.+.++.+ ++.+ ....|+||+||+++++ |++||+.++.|+|+.+++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~-q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATAS-QEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCC-hHHHHHHHHHHHHHHHhcCC
Confidence 5999999999999999888899998877654 3443 2378999999998765 89999999999999999999
Q ss_pred CEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCccccccccc
Q 004235 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~ 160 (766)
|+||||||+|||||||||+|+ ...+||||+++++||+.+........|.|+|||+|||+|.|+|||++.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~---~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~-------- 148 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGT---PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS-------- 148 (335)
T ss_pred ceeEEEeCCCCCCCceEecCC---CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--------
Confidence 999999999999999999885 456899999999999999887667899999999999999999999864
Q ss_pred CCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeec
Q 004235 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (766)
Q Consensus 161 ~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~ 240 (766)
.+++.|++++++++++.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 -----------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~ 217 (335)
T smart00129 149 -----------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN 217 (335)
T ss_pred -----------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC
Confidence 257999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred ccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCC
Q 004235 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (766)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRd 320 (766)
........|+|+|||||||||..+.++.|.+++|+..||+||.+|++||.+|+++. +..|||||+
T Consensus 218 ------------~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~---~~~~ip~r~ 282 (335)
T smart00129 218 ------------SSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQ---KSRHIPYRD 282 (335)
T ss_pred ------------CCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC---CCCCCCCcC
Confidence 12345688999999999999999999999999999999999999999999998753 246999999
Q ss_pred ChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 004235 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (766)
Q Consensus 321 SkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn 373 (766)
|+||+||+++|||+++|+||+||||...+++||++||+||+++++|+|+|++|
T Consensus 283 S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 283 SKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999999999999999999999875
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.6e-74 Score=665.31 Aligned_cols=324 Identities=40% Similarity=0.624 Sum_probs=287.4
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceee---------CceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhC
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ 78 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~---------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~ 78 (766)
++|+|+|||||+.+.+....+...+ ..++...+.+ ..+.|.||+||+|.++ |++||.. +.|+|.++|+
T Consensus 314 GnIRV~CRvRP~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~s-Q~~VF~e-~~~lv~S~lD 390 (670)
T KOG0239|consen 314 GNIRVFCRVRPLLPSEKQRLQSKVI-DTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLAS-QDDVFEE-VSPLVQSALD 390 (670)
T ss_pred cCceEEEEecCCCcccccccccccc-ccCCcceeEeecCCCCCCCccccceeeeecCCccc-HHHHHHH-HHHHHHHHhc
Confidence 7999999999999998754322222 2221111222 1135999999999876 8999988 8999999999
Q ss_pred CcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCccccccc
Q 004235 79 GYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSV 158 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~ 158 (766)
|||+||||||||||||||||.|+ .+..+|||||++++||..+......|.|.+.+||+|||||.|+|||++.+
T Consensus 391 GYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~----- 463 (670)
T KOG0239|consen 391 GYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES----- 463 (670)
T ss_pred CcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc-----
Confidence 99999999999999999999885 55679999999999999999988899999999999999999999997642
Q ss_pred ccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeee
Q 004235 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238 (766)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~ 238 (766)
....+.|+.++++.++|.|++.+.|.+.+++..++..|..+|++++|++|.+|||||+||+|+|....
T Consensus 464 ------------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~ 531 (670)
T KOG0239|consen 464 ------------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGIN 531 (670)
T ss_pred ------------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccc
Confidence 12478899999999999999999999999999999999999999999999999999999999997531
Q ss_pred ecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccC
Q 004235 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPY 318 (766)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPy 318 (766)
........+.|+|||||||||+++++++|.|++|+.+||+||++||+||.||+.. ..||||
T Consensus 532 --------------~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k-----~~HiPy 592 (670)
T KOG0239|consen 532 --------------ELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK-----RSHIPY 592 (670)
T ss_pred --------------cCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc-----CCCCcc
Confidence 2234567899999999999999999999999999999999999999999999874 359999
Q ss_pred CCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccccccccc
Q 004235 319 RDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVV 372 (766)
Q Consensus 319 RdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~v 372 (766)
||||||+||||+|||+++|+|+++|||...++.||+++|+||.|++.+...|..
T Consensus 593 RNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 593 RNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred cccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 999999999999999999999999999999999999999999999999987754
No 24
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-71 Score=604.27 Aligned_cols=325 Identities=36% Similarity=0.567 Sum_probs=287.4
Q ss_pred CCCCCceEEEEEeCCCCcchhccCCceEEEEeC------CCcceee------CceeEEcceeeCCCCCchhhhhhhhhHh
Q 004235 4 ASENCSVKVAVHVRPLIGDERAQGCKECVAVTH------GNPQVQI------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (766)
Q Consensus 4 ~~~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~------~~~~v~~------~~~~F~FD~Vf~~~~s~q~~vy~~~v~p 71 (766)
+.....|.||||=||++.+|....--+.++|+. ++|...+ ..+.|.|||+||..++ ++.||..+++|
T Consensus 204 ~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~s-Ne~VYrfTa~P 282 (676)
T KOG0246|consen 204 GVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESAS-NELVYRFTAKP 282 (676)
T ss_pred CCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccc-hHHHHHHhhhH
Confidence 345568999999999999998777666666633 3444333 3579999999998876 89999999999
Q ss_pred HHHHHhCCcCEEEEeecccCCCCccccCCCCCCC---CcccchHHHHHHHHHHHHhc-cccceeeEEeehhhhhcceeee
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREG---FQTGLIPQVMNALFNKIETL-RHQMEFQLHVSFIEILKEEVRD 147 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~---~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIynE~v~D 147 (766)
||..+|+|--+|+||||||||||||||||+|... ...||.-++.+|+|..+... -....+.|+|||||||+.+|||
T Consensus 283 lV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfD 362 (676)
T KOG0246|consen 283 LVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYD 362 (676)
T ss_pred HHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhh
Confidence 9999999999999999999999999999999743 35699999999999998752 2346899999999999999999
Q ss_pred ccCCcccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcE
Q 004235 148 LLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSH 227 (766)
Q Consensus 148 LL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH 227 (766)
||++ +..+.+.||.+..+.|.||++..|.+.+|++.+++.|+..|+++.|..|..|||||
T Consensus 363 LL~~--------------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSH 422 (676)
T KOG0246|consen 363 LLND--------------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSH 422 (676)
T ss_pred hhcc--------------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccc
Confidence 9975 35789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCcccccc-CCCCcchhhhhhhhhhhhHHHHHHHHhhh
Q 004235 228 AIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRT-GSDGLRLKEGIHINRGLLALGNVISALGD 306 (766)
Q Consensus 228 ~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t-~a~g~r~kE~~~IN~SL~aLg~vI~aL~~ 306 (766)
|||+|.+.... +....+||.||||||+||...| .++-++-.||..||+||+||-.||.||+.
T Consensus 423 AvfQIilr~~~-----------------~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~ 485 (676)
T KOG0246|consen 423 AVFQIILRKHG-----------------EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR 485 (676)
T ss_pred eeEeeeeecCC-----------------cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 99999997521 2357899999999999998655 45667778999999999999999999987
Q ss_pred hccCCCCCcccCCCChhhhhhhhhcCC-CceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccc
Q 004235 307 EKKRREGVHVPYRDSKLTRLLQDSLGG-NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (766)
Q Consensus 307 ~~~~~~~~~vPyRdSkLTrLLqdsLgG-ns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~ 371 (766)
.+ .|+|||.||||.+|+|||=| ||+|+||+||||...+.+.||||||||+|+|.....+.
T Consensus 486 nk-----~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 486 NK-----SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred CC-----CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 65 49999999999999999988 99999999999999999999999999999999876554
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=9.3e-72 Score=610.63 Aligned_cols=322 Identities=48% Similarity=0.748 Sum_probs=280.1
Q ss_pred EeCCCCcchhccCCceEEEEeCC---------CcceeeCceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEE
Q 004235 15 HVRPLIGDERAQGCKECVAVTHG---------NPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVL 85 (766)
Q Consensus 15 RvRP~~~~E~~~~~~~~~~v~~~---------~~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~ 85 (766)
||||++..|...+...++.+... ..........|.||+||+++++ |++||+.++.|+|+++|+|||+|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDAT-QEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTST-HHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCC-HHHHHHHHHHHHHHHhhcCCceEEE
Confidence 89999999998888877765421 1111123479999999999765 9999999999999999999999999
Q ss_pred eecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhcccc--ceeeEEeehhhhhcceeeeccCCcccccccccCCC
Q 004235 86 AYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQ--MEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (766)
Q Consensus 86 aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~--~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~ 163 (766)
|||+|||||||||+|+ .....+|||||++++||..+...... ..|.|+|||+|||||.|+|||++...
T Consensus 80 ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~--------- 149 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS--------- 149 (335)
T ss_dssp EEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS---------
T ss_pred eecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc---------
Confidence 9999999999999996 33667999999999999999986554 68999999999999999999987531
Q ss_pred CCccccCCCCCceeeeCCCCc-EEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeeccc
Q 004235 164 AGKVSISGRPPIQIRESSNGV-ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHS 242 (766)
Q Consensus 164 ~~~~~~~~~~~l~ire~~~~~-~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~ 242 (766)
....++.|++++..| ++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+......
T Consensus 150 ------~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~ 223 (335)
T PF00225_consen 150 ------KSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPS 223 (335)
T ss_dssp ------STTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTT
T ss_pred ------ccccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence 113479999999976 9999999999999999999999999999999999999999999999999998654211
Q ss_pred CCCCCCCCCCCCCcceeeeceeeeecCCCccccccCC-CCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCC
Q 004235 243 VSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS-DGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDS 321 (766)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a-~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdS 321 (766)
........|+|+|||||||||..++++ .|.+++|+..||+||.+|++||.+|+... ...|||||||
T Consensus 224 ----------~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~---~~~~vpyr~S 290 (335)
T PF00225_consen 224 ----------DDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGS---KQSHVPYRDS 290 (335)
T ss_dssp ----------TEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTT---STSSSCGGGS
T ss_pred ----------ccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccc---cchhhhhhcc
Confidence 001135789999999999999999886 47889999999999999999999999872 3469999999
Q ss_pred hhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 322 KLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 322 kLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
|||+||+|+|||||+|+||+||||...+++||++||+||++||+|
T Consensus 291 kLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 291 KLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999987
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-70 Score=605.94 Aligned_cols=336 Identities=36% Similarity=0.575 Sum_probs=291.1
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-------------C--ceeEEcceeeCCCCCchhhhhhhhhHhHH
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------G--THSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~-------------~--~~~F~FD~Vf~~~~s~q~~vy~~~v~plV 73 (766)
+|.|++|+||+.... +...|+.|......+-. + .+.|+|.+||+|+++ |.+||+.|+.|+|
T Consensus 32 ~v~v~~rvrP~~~~~---~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~t-Q~dvF~~~~~plV 107 (809)
T KOG0247|consen 32 PVLVVCRVRPLSDAS---EDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVT-QADVFDTTVAPLV 107 (809)
T ss_pred chheeEeecCCCCCc---cccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCcc-HHHHHHHHhHHHH
Confidence 899999999998633 33446655543322211 1 257999999999876 8999999999999
Q ss_pred HHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhcc---------------------------
Q 004235 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR--------------------------- 126 (766)
Q Consensus 74 ~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~--------------------------- 126 (766)
.+++.|.|..+|+||.|||||||||.|+ ...+||+||+++.||+.|....
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~---~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lk 184 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGT---PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLK 184 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecC---CCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999885 4458999999999999986410
Q ss_pred -------------------------------------ccceeeEEeehhhhhcceeeeccCCcccccccccCCCCCcccc
Q 004235 127 -------------------------------------HQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSI 169 (766)
Q Consensus 127 -------------------------------------~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~ 169 (766)
.+..|.|+|||+|||||-|||||.+.+.. +
T Consensus 185 r~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q------~------- 251 (809)
T KOG0247|consen 185 REAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQ------G------- 251 (809)
T ss_pred hhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhcccccc------c-------
Confidence 11358999999999999999999875421 1
Q ss_pred CCCC-CceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccCCCCCC
Q 004235 170 SGRP-PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNG 248 (766)
Q Consensus 170 ~~~~-~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~~~~~ 248 (766)
..+ ...+++|.+|..||.|+++|.|+|.+|++.+|..|...|++++|..|..|||||+||+|.|.+....
T Consensus 252 -~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~-------- 322 (809)
T KOG0247|consen 252 -KLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS-------- 322 (809)
T ss_pred -hhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc--------
Confidence 112 2567899999999999999999999999999999999999999999999999999999999885321
Q ss_pred CCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCChhhhhhh
Q 004235 249 TPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQ 328 (766)
Q Consensus 249 ~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSkLTrLLq 328 (766)
.....+..|.|.|||||||||..+|++.|.|++||++||.||++||.||.+|...++.+...+|||||||||++++
T Consensus 323 ----~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq 398 (809)
T KOG0247|consen 323 ----QDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFK 398 (809)
T ss_pred ----cccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHH
Confidence 1235678899999999999999999999999999999999999999999999998877777899999999999999
Q ss_pred hhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccc
Q 004235 329 DSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLI 377 (766)
Q Consensus 329 dsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~ 377 (766)
.+|.|..+..||.||+|.+.+|+|+++.|+||.-|..|.+.+-++..+.
T Consensus 399 ~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~~ 447 (809)
T KOG0247|consen 399 NYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIKKQP 447 (809)
T ss_pred HhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccccCC
Confidence 9999999999999999999999999999999999999998877765443
No 27
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.3e-70 Score=596.67 Aligned_cols=318 Identities=48% Similarity=0.753 Sum_probs=284.9
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC---------ceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCC
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~---------~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G 79 (766)
+|+|+|||||+...| ..+...|+.+.++ .+|.+. .+.|.||+||+++++ |++||+.++.|+|+.+++|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~-q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDN-KTVTLTPPKDGRKAGPKSFTFDHVFDPNST-QEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCC-CEEEEecCccccCcCceEEECCeEEcCCCC-HHHHHHHHHHHHHHHHhCC
Confidence 599999999999887 3455677777764 334442 379999999999865 8999999999999999999
Q ss_pred cCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccc-cceeeEEeehhhhhcceeeeccCCccccccc
Q 004235 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSV 158 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~ 158 (766)
||+||||||+|||||||||+|+. ..+||||+++++||..+..... ...|.|.+||+|||+|.|+|||++..
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~---~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~----- 149 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSP---KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP----- 149 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-----
Confidence 99999999999999999998854 5699999999999999987543 57899999999999999999998742
Q ss_pred ccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeee
Q 004235 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238 (766)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~ 238 (766)
...++.|++++.+++++.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+..
T Consensus 150 ------------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~ 217 (328)
T cd00106 150 ------------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRN 217 (328)
T ss_pred ------------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEe
Confidence 13589999999999999999999999999999999999999999999999999999999999999864
Q ss_pred ecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccC
Q 004235 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPY 318 (766)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPy 318 (766)
.... ......|+|+||||||||+..+++..|.+++|+..||+||.+|++||.+|+.+.. ..||||
T Consensus 218 ~~~~------------~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~---~~~ip~ 282 (328)
T cd00106 218 TTND------------GRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK---KKHIPY 282 (328)
T ss_pred cCCC------------CccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC---CCcCCC
Confidence 3211 1136789999999999999999999999999999999999999999999998652 359999
Q ss_pred CCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhc
Q 004235 319 RDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (766)
Q Consensus 319 RdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar 364 (766)
|+||||+||+|+|||||+|+||+||||...+++||++||+||+|||
T Consensus 283 r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 283 RDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999986
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.3e-64 Score=578.35 Aligned_cols=320 Identities=46% Similarity=0.709 Sum_probs=280.9
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceee--C-ceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEE
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--G-THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATV 84 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~--~-~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI 84 (766)
..+++.++..|-...+... ...+...+.. . ...|.||+||++.++ |++||+.++.|+++.++.|||+||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~fdkvf~~~~~-q~~v~e~~~~~l~~~~l~g~N~Tv 93 (568)
T COG5059 22 SDIKSTIRIIPGELGERLI-------NTSKKSHVSLEKSKEGTYAFDKVFGPSAT-QEDVYEETIKPLIDSLLLGYNCTV 93 (568)
T ss_pred cCceEEEeecCCCcchhee-------ecccccccccccccceEEEEeeccCCCCc-HHHHHHHhhhhHHHHHHhcccceE
Confidence 4677777777765543111 1111111111 1 356999999999875 999999999999999999999999
Q ss_pred EeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccccccCCCC
Q 004235 85 LAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHA 164 (766)
Q Consensus 85 ~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~ 164 (766)
||||||||||||||.|.. ..+||||+++.+||+.++.......|.|.|||+|||||+++|||.|..
T Consensus 94 fayGqTgsgKtyt~~G~~---~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~----------- 159 (568)
T COG5059 94 FAYGQTGSGKTYTMSGTE---EEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNE----------- 159 (568)
T ss_pred EEEcccCCCceeEeecCc---cccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcc-----------
Confidence 999999999999998854 679999999999999999987778899999999999999999998754
Q ss_pred CccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccCC
Q 004235 165 GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVS 244 (766)
Q Consensus 165 ~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~ 244 (766)
..+.++++..++++|.|++++.|.+.+|++.+|..|..+|++++|.+|..|||||+||+|++.+..+...
T Consensus 160 --------~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~-- 229 (568)
T COG5059 160 --------ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG-- 229 (568)
T ss_pred --------ccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc--
Confidence 1267899999999999999999999999999999999999999999999999999999999998654321
Q ss_pred CCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCChhh
Q 004235 245 PDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLT 324 (766)
Q Consensus 245 ~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSkLT 324 (766)
....++|+||||||||++..++..|.|++||..||+||++||+||++|.+.+ +..||||||||||
T Consensus 230 ------------~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~---~~~~ipyReskLT 294 (568)
T COG5059 230 ------------TSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKK---KSGHIPYRESKLT 294 (568)
T ss_pred ------------ceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccc---cCCccchhhhHHH
Confidence 1223799999999999999999999999999999999999999999999853 3569999999999
Q ss_pred hhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 004235 325 RLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNR 374 (766)
Q Consensus 325 rLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~ 374 (766)
|+|+++||||++|.|||||||+..++++|.+||+||+||+.|+|+|++|.
T Consensus 295 RlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 295 RLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 99999999999999999999999999999999999999999999999985
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.1e-50 Score=407.75 Aligned_cols=179 Identities=51% Similarity=0.809 Sum_probs=163.8
Q ss_pred hhhhhhHhHHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcc
Q 004235 64 MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (766)
Q Consensus 64 vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE 143 (766)
||+.++ |+|+.+++|||+||||||||||||||||+|+. .+.||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~---~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR---EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC---CCCCcchHHHHH--------------------------
Confidence 999988 99999999999999999999999999998854 578999999987
Q ss_pred eeeeccCCcccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCC
Q 004235 144 EVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223 (766)
Q Consensus 144 ~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~S 223 (766)
++.+|..|..+|.+++|.+|..|
T Consensus 58 ---------------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~S 80 (186)
T cd01363 58 ---------------------------------------------------------VIDLMDKGNANRTTAATAMNEHS 80 (186)
T ss_pred ---------------------------------------------------------HHHHHhhccccccccccCCCCcc
Confidence 67888999999999999999999
Q ss_pred CCcEEEEEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHH
Q 004235 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303 (766)
Q Consensus 224 SRSH~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~a 303 (766)
||||+||+|+|.+...... .......|+|+||||||||+.+++++.|.+++|+.+||+||++|++||.+
T Consensus 81 SRsH~i~~i~v~~~~~~~~-----------~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~ 149 (186)
T cd01363 81 SRSHSVFRIHFGGKNALAS-----------ATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISA 149 (186)
T ss_pred CcccEEEEEEEEEeecCCC-----------CccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999998653211 12345789999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcccCCCChhhhhhhhhcCCCceeeEEeecCC
Q 004235 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISP 345 (766)
Q Consensus 304 L~~~~~~~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP 345 (766)
|+... .||||||||||+||+|+|||||+|+||+||||
T Consensus 150 l~~~~-----~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 150 LAERD-----SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HhcCC-----CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 98754 49999999999999999999999999999999
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.12 E-value=3.6e-08 Score=115.15 Aligned_cols=255 Identities=22% Similarity=0.281 Sum_probs=152.9
Q ss_pred CCCCCCceEEEEEeCCCCcchh---------ccCCceEEEEeCCC-cceeeCceeEEcceeeCCCCCchhhhhhhhhHhH
Q 004235 3 TASENCSVKVAVHVRPLIGDER---------AQGCKECVAVTHGN-PQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (766)
Q Consensus 3 ~~~~~~~V~V~vRvRP~~~~E~---------~~~~~~~~~v~~~~-~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~v~pl 72 (766)
.-++.+.++|+|+|+|...... ......-..+..+. .++......|.||.+|.+... ...++.. ...+
T Consensus 300 sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~-~~~~ 377 (568)
T COG5059 300 SLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEI-EILVFRE-QSQL 377 (568)
T ss_pred hcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhh-hhHHHHH-HHhh
Confidence 3456779999999999885421 00011011111111 122223368999999987643 4444443 5677
Q ss_pred HHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccc-cceeeEEeehhhhhcceeeeccCC
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDS 151 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~~ 151 (766)
++.-+.| +++||++++|+++|| .....++.+-.+...|..+..... .+.+...+-++++|-....++...
T Consensus 378 ~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e 448 (568)
T COG5059 378 SQSSLSG----IFAYMQSLKKETETL-----KSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREE 448 (568)
T ss_pred hhhhhhh----HHHHHhhhhhhhhcc-----cchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888 999999999999999 334456667777888887766432 345556666777772222222221
Q ss_pred cccccccccCCCCCccccCCCCCceeeeCCC-CcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEE
Q 004235 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSN-GVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (766)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~-~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~If 230 (766)
.... +.-.+..... ......-++ .......+.... ......+..+++..|..++++|.+|
T Consensus 449 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~ 509 (568)
T COG5059 449 ELSK-----------------KKTKIHKLNKLRHDLSSLLS-SIPEETSDRVES-EKASKLRSSASTKLNLRSSRSHSKF 509 (568)
T ss_pred hcCC-----------------hHHHHHHHHHHHHHHHHhhh-hcchhhhhhhhh-hhhccchhhcccchhhhhcccchhh
Confidence 1100 0000000000 000000000 000111111111 1456778889999999999999999
Q ss_pred EEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhh
Q 004235 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG 305 (766)
Q Consensus 231 ti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~ 305 (766)
+......... ... .+ ++.|||||+||. .+..-|.++++..++|++|..+|.+|.++.
T Consensus 510 ~~~~~~~~~~--------------~~~-~~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 510 RDHLNGSNSS--------------TKE-LS--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhcccchhhh--------------hHH-HH--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 8765421110 001 11 799999999999 899999999999999999999999998874
No 31
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.73 E-value=0.22 Score=60.09 Aligned_cols=362 Identities=19% Similarity=0.175 Sum_probs=176.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHhHhhCCCChHHHHHHHHHHHHHHHHHH
Q 004235 343 ISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNE 422 (766)
Q Consensus 343 vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~L~~~i~~l~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~ 422 (766)
.-|+..+-+-+...+.|++|+-..+-.-.| ....-..|+.|++.+++.- .+.....++-.++.++..+..++.
T Consensus 246 er~d~~ykerlmDs~fykdRveelkedN~v----LleekeMLeeQLq~lrars---e~~tleseiiqlkqkl~dm~~erd 318 (1195)
T KOG4643|consen 246 ERPDTTYKERLMDSDFYKDRVEELKEDNRV----LLEEKEMLEEQLQKLRARS---EGATLESEIIQLKQKLDDMRSERD 318 (1195)
T ss_pred hcCCCccchhhhhhHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHhcc---ccCChHHHHHHHHHHHHHHHHhhh
Confidence 344455667788888999999888753211 1233445666666665532 123445666667777777777666
Q ss_pred HHHHHHHHHHHhHHHHHhcc--ccccCCCc-ccc-----ccchhhhhcccccCCchhhhhhhcCCCChhHHHH-----HH
Q 004235 423 DLCQELHEYRSRRAVVEHCG--TDAQEGPV-SFV-----KSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEV-----AK 489 (766)
Q Consensus 423 ~l~~~l~~~~~~~~~~~~~~--~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 489 (766)
..+..+.++......+.... .+.+.... ... .+..+...-..+.. +.+.. ..++.. ..
T Consensus 319 tdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-----~ralk----llLEnrrlt~tle 389 (1195)
T KOG4643|consen 319 TDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-----DRALK----LLLENRRLTGTLE 389 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-----HHHHH----HHHHhHHHHHHHH
Confidence 66655555443322111100 00000000 000 00000000000000 00000 000000 00
Q ss_pred H-----H-HHHHhhhchHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004235 490 E-----W-EHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA 563 (766)
Q Consensus 490 e-----~-e~~~~q~~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~ 563 (766)
+ + +.+..--.|.++-..|.+++++.|+.+..+ .+.+.+|+..-+.|+.|+++++.+..+...
T Consensus 390 elqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql------------~qq~~eled~~K~L~~E~ekl~~e~~t~~~ 457 (1195)
T KOG4643|consen 390 ELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQL------------LQQLAELEDLEKKLQFELEKLLEETSTVTR 457 (1195)
T ss_pred HHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 111111234445556666677666655433 256789999999999999999999888654
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 564 NSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWK 643 (766)
Q Consensus 564 ~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k 643 (766)
..+. .++..++..+.+.....-.+..-..+..+..+-+.-......+.+|.+.+..+|.|--+...+.....++...
T Consensus 458 s~~r-q~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~ee-- 534 (1195)
T KOG4643|consen 458 SLSR-QSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEE-- 534 (1195)
T ss_pred hHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3332 2333444444443322222222222223455555666677777788888888888777766666655555443
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH--HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCC
Q 004235 644 ASREKELLKLKKEGRKNEFERHKLEA--LNQR----------QKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNST 711 (766)
Q Consensus 644 ~~~~kEi~qLkk~~rk~~~ei~~L~~--~~~~----------q~~vLkrK~eEa~a~~krlk~~l~~~k~~~~~~~~~~~ 711 (766)
.+..+--|+++.+--..+|+.|.. ++.. +..+-.+|+=.+..+.+|-++.|+....-+..-...
T Consensus 535 --Le~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~-- 610 (1195)
T KOG4643|consen 535 --LEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDP-- 610 (1195)
T ss_pred --HHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC--
Confidence 223333334443333334444433 1100 111223344445557888888888765433222110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004235 712 GYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYE 747 (766)
Q Consensus 712 ~~~~~~~~~~~~~~~~wv~~Ele~~~~~~e~~~~~e 747 (766)
.--.+-+.||-.-+--.+....++..++
T Consensus 611 --------~~~kr~ie~Lr~~~~kll~~Kkdr~ree 638 (1195)
T KOG4643|consen 611 --------IPLKRDIEWLRRKESKLLKEKKDRNREE 638 (1195)
T ss_pred --------CchhhhHHHHHHHHHhhcchhHHHHHHH
Confidence 0124677888777444444444444443
No 32
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.69 E-value=0.069 Score=68.64 Aligned_cols=168 Identities=18% Similarity=0.291 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHH
Q 004235 500 MDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLK 579 (766)
Q Consensus 500 l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~k 579 (766)
+..++..++..|+..+.....+.+.+.+.+... -.++.++..++..++.+.+.|......+....+...+++.++....
T Consensus 318 ~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~-~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~ 396 (1201)
T PF12128_consen 318 LNADLARIKSELDEIEQQKKDYEDADIEQLIAR-VDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQ 396 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554445544444433332 2455566666666666666666666665555555555665555555
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 004235 580 LKALEAQILELKKKQES---------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ--EAEQFRQWKASREK 648 (766)
Q Consensus 580 l~~Le~el~~Lk~k~~e---------~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmke--e~~~~r~~k~~~~k 648 (766)
+..++.++..++....+ +.-.....+..+..+..++.+...++.+...|-.+.+. -.+...+.....+.
T Consensus 397 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~ 476 (1201)
T PF12128_consen 397 QERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADK 476 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHH
Confidence 55555554444322221 11111233344455555555555555555444333322 12233333333444
Q ss_pred HHHHHHHhhhhhHHHHHHHH
Q 004235 649 ELLKLKKEGRKNEFERHKLE 668 (766)
Q Consensus 649 Ei~qLkk~~rk~~~ei~~L~ 668 (766)
++.+...+.......+..++
T Consensus 477 ~~~~a~~~~~~~~~~~~~~~ 496 (1201)
T PF12128_consen 477 RLEQAQEQQNQAQQAVEELQ 496 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55444444444444444444
No 33
>PRK11637 AmiB activator; Provisional
Probab=97.56 E-value=0.079 Score=60.51 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=29.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 004235 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ---EAEQFRQWKASREKELLKLKKEGRKNEFERHKL 667 (766)
Q Consensus 600 l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmke---e~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L 667 (766)
|...+...+.+...|...+..++.++..|..+..+ ...+........+.++.+|+++..+....|.++
T Consensus 182 L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 182 LAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433 333333333444444444444444444444333
No 34
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.52 E-value=0.75 Score=60.62 Aligned_cols=103 Identities=23% Similarity=0.298 Sum_probs=58.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 004235 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ---NKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQ 674 (766)
Q Consensus 598 ~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~---kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q 674 (766)
..+-+.+.+.+..+..|...+...++.+..+- ++...+..-++.|-......+..|..+..+.+.++..|+...+--
T Consensus 1009 ~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e 1088 (1930)
T KOG0161|consen 1009 KSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDE 1088 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34445556666666666666666665554443 555556666666666666666666666666666666665554443
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 675 KM---VLQRKTEEAAIATKRLKELLEARK 700 (766)
Q Consensus 675 ~~---vLkrK~eEa~a~~krlk~~l~~~k 700 (766)
.. -|+++..|..+-.+-|.+.|+..+
T Consensus 1089 ~~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1089 QAEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 245555555444444444444433
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.51 E-value=0.3 Score=55.80 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=56.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 004235 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMV 677 (766)
Q Consensus 598 ~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~v 677 (766)
.+++..-.....++.....++...+.....+...+..+.......+..++.++.+|+++....+.++.+|++..++-...
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~ 248 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDS 248 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555666666666666666777777777777778888888888888888888888887766665555
Q ss_pred HHHH
Q 004235 678 LQRK 681 (766)
Q Consensus 678 LkrK 681 (766)
|.+.
T Consensus 249 I~~l 252 (428)
T PRK11637 249 IARA 252 (428)
T ss_pred HHHH
Confidence 5543
No 36
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.50 E-value=0.36 Score=59.64 Aligned_cols=86 Identities=26% Similarity=0.388 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHH--HHHHHHHHHHHH
Q 004235 607 SDEAAKRLQAEIQSIKAQKV---QLQNKIKQEAEQFRQWKASREKELLKL---KKEGRKNEFERHK--LEALNQRQKMVL 678 (766)
Q Consensus 607 ~e~~i~~L~~Ei~~mK~~kV---~L~kkmkee~~~~r~~k~~~~kEi~qL---kk~~rk~~~ei~~--L~~~~~~q~~vL 678 (766)
....-+.++.+....+.++- ..+.-++++..-.........+++.++ |++.....+...+ ++..++++..++
T Consensus 600 ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~ 679 (1317)
T KOG0612|consen 600 LSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKML 679 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443332 222333333333333333344444443 3333333344444 888999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004235 679 QRKTEEAAIATKRL 692 (766)
Q Consensus 679 krK~eEa~a~~krl 692 (766)
+-.+++..+.++|+
T Consensus 680 q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 680 QNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999999
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.36 E-value=0.34 Score=62.13 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=11.9
Q ss_pred EeecccCCCCcccc
Q 004235 85 LAYGQTGSGKTYTM 98 (766)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (766)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 34799999999877
No 38
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.21 E-value=0.34 Score=56.27 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004235 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (766)
Q Consensus 527 ~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~ 562 (766)
..++..|.++|..|+.++..+-+|||-|..++.++.
T Consensus 401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk 436 (961)
T KOG4673|consen 401 SSLREEYHQRVATLEKKVQALTKERDALRREQKSLK 436 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 457889999999999999999999999999988763
No 39
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.10 E-value=1.3 Score=58.38 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=52.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 570 QKMQDGHTLKLKALEAQILELKKKQE----SQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKAS 645 (766)
Q Consensus 570 ~kl~e~~~~kl~~Le~el~~Lk~k~~----e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~ 645 (766)
++.+.+.++....|+.++..++.... ....+.....+.+..+..++.++...+....++.|++++=..+.......
T Consensus 1033 ~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~ 1112 (1930)
T KOG0161|consen 1033 KRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEE 1112 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666655543332 23334445555556666666666666666677777776666666666666
Q ss_pred HHHHHHHHHHhhhhhHH
Q 004235 646 REKELLKLKKEGRKNEF 662 (766)
Q Consensus 646 ~~kEi~qLkk~~rk~~~ 662 (766)
.+.|-+++-|-.|++.-
T Consensus 1113 le~er~~r~K~ek~r~d 1129 (1930)
T KOG0161|consen 1113 LEAERASRAKAERQRRD 1129 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66665555544444433
No 40
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.05 E-value=0.83 Score=58.47 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=7.2
Q ss_pred eecccCCCCcccc
Q 004235 86 AYGQTGSGKTYTM 98 (766)
Q Consensus 86 aYGqTGSGKTyTm 98 (766)
-+|++|||||..|
T Consensus 28 i~G~NGsGKS~ll 40 (1179)
T TIGR02168 28 IVGPNGCGKSNIV 40 (1179)
T ss_pred EECCCCCChhHHH
Confidence 3456666665554
No 41
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.01 E-value=1 Score=57.60 Aligned_cols=8 Identities=25% Similarity=0.559 Sum_probs=3.4
Q ss_pred eeeCCCCC
Q 004235 52 HVYGNGGS 59 (766)
Q Consensus 52 ~Vf~~~~s 59 (766)
.|.||+++
T Consensus 27 ~i~G~NGs 34 (1179)
T TIGR02168 27 GIVGPNGC 34 (1179)
T ss_pred EEECCCCC
Confidence 34444443
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.00 E-value=1.1 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004235 677 VLQRKTEEAAIATKRLKELLEA 698 (766)
Q Consensus 677 vLkrK~eEa~a~~krlk~~l~~ 698 (766)
-|++...|..--.+||..-|+.
T Consensus 435 ql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 435 QLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556555543
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.00 E-value=0.79 Score=53.13 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=25.2
Q ss_pred HHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHh-hhcccccc
Q 004235 725 LQKWLEHELE-VSANVHEVRFKYEKQSQVYVS-ILYFPCTC 763 (766)
Q Consensus 725 ~~~wv~~Ele-~~~~~~e~~~~~e~~~~~r~~-~~~~~~~~ 763 (766)
.-.|+...|+ +.....+=...+|.-+.++.+ |+.|+|-|
T Consensus 318 ~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec 358 (546)
T KOG0977|consen 318 RNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREEC 358 (546)
T ss_pred cChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 3455666665 455556667777777777754 55777777
No 44
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.99 E-value=0.83 Score=58.58 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=9.9
Q ss_pred cceeeCCCCCchhhhhh
Q 004235 50 FDHVYGNGGSPSSAMFG 66 (766)
Q Consensus 50 FD~Vf~~~~s~q~~vy~ 66 (766)
|..|+||+++.-..|.+
T Consensus 25 ~~~i~G~NGsGKS~ild 41 (1164)
T TIGR02169 25 FTVISGPNGSGKSNIGD 41 (1164)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 44677887765444433
No 45
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.94 E-value=1.3 Score=53.96 Aligned_cols=96 Identities=21% Similarity=0.356 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 004235 574 DGHTLKLKALEAQILELKKKQES-----------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ--EAEQFR 640 (766)
Q Consensus 574 e~~~~kl~~Le~el~~Lk~k~~e-----------~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmke--e~~~~r 640 (766)
+.|++.++.+..++..|++..-+ .+.|.....+.+..|+.|..++...+.--.+|.+++.. ...+++
T Consensus 468 e~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~ 547 (775)
T PF10174_consen 468 ETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELR 547 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhc
Confidence 45677777777777777765544 45666677788899999999999888888888888865 224666
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 004235 641 QWKASREKELLKLKKEGRKNEFERHKLEA 669 (766)
Q Consensus 641 ~~k~~~~kEi~qLkk~~rk~~~ei~~L~~ 669 (766)
.--...++++...+.+..+.+.||-+|-.
T Consensus 548 ~r~~~Le~ev~~~~ee~~kaq~EVERLl~ 576 (775)
T PF10174_consen 548 DRIQQLEQEVTRYREESEKAQAEVERLLD 576 (775)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667888888888888888888777753
No 46
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.76 E-value=3.2 Score=53.61 Aligned_cols=58 Identities=21% Similarity=0.106 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 642 WKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (766)
Q Consensus 642 ~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~~ 699 (766)
.-.....+|..|...-......+..++.........+++...++..+..++..+...+
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 497 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQ 497 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555566555555666666666666666666666666666666665554433
No 47
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.75 E-value=1 Score=54.33 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHh
Q 004235 378 SSDMQKLRQQLKYLQAELCAR 398 (766)
Q Consensus 378 ~~~i~~L~~~i~~l~~el~~~ 398 (766)
...+.+|..+|+.|+.+|...
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~ 437 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSS 437 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 345678888888888888543
No 48
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0026 Score=71.90 Aligned_cols=94 Identities=24% Similarity=0.448 Sum_probs=62.9
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchH----HHHHHHHHH
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIP----QVMNALFNK 121 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giip----r~~~~LF~~ 121 (766)
..|....-|.|.+.|. ..+..||+++-.|.-.-++ .|.|||||||||..=-..-..|-+|- -....||+.
T Consensus 3 ~~F~l~s~f~PaGDQP-----~AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 3 KPFKLHSPFKPAGDQP-----EAIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CceEeccCCCCCCCcH-----HHHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHH
Confidence 3577777888877643 3578889998888766554 49999999999932100011111211 245677777
Q ss_pred HHhccccceeeEEeehhhhhccee
Q 004235 122 IETLRHQMEFQLHVSFIEILKEEV 145 (766)
Q Consensus 122 i~~~~~~~~~~v~vS~~EIynE~v 145 (766)
+...-++..+..+|||+..|+-+-
T Consensus 77 fk~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 77 FKEFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HHHhCcCcceEEEeeeccccCccc
Confidence 777666777888999999887554
No 49
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=1.5 Score=53.21 Aligned_cols=89 Identities=19% Similarity=0.189 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 004235 633 KQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTG 712 (766)
Q Consensus 633 kee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~~k~~~~~~~~~~~~ 712 (766)
.++...-++.+......+..++.+--.++.|+.+.+-.++.+.--=.+-....+.+..+.++++.++-
T Consensus 313 q~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqg------------ 380 (1200)
T KOG0964|consen 313 QDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQG------------ 380 (1200)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc------------
Confidence 33333444444444455555666666677777776655554322112222233334444555554431
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHH
Q 004235 713 YTTPTGQ-SNEKSLQKWLEHELEVS 736 (766)
Q Consensus 713 ~~~~~~~-~~~~~~~~wv~~Ele~~ 736 (766)
+.++ .+-++...||-.||+-.
T Consensus 381 ---r~sqFssk~eRDkwir~ei~~l 402 (1200)
T KOG0964|consen 381 ---RYSQFSSKEERDKWIRSEIEKL 402 (1200)
T ss_pred ---cccccCcHHHHHHHHHHHHHHH
Confidence 1122 34578999999999843
No 50
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.56 E-value=3.1 Score=50.87 Aligned_cols=231 Identities=21% Similarity=0.281 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc--cccccCCCcccccc
Q 004235 378 SSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHC--GTDAQEGPVSFVKS 455 (766)
Q Consensus 378 ~~~i~~L~~~i~~l~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 455 (766)
...+..++..|..|+.|+-... +.+..++..+..++++..+|+++..++...-..+... ..++........ +
T Consensus 176 ~velAdle~kir~LrqElEEK~-----enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~-d 249 (1195)
T KOG4643|consen 176 EVELADLEKKIRTLRQELEEKF-----ENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERP-D 249 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcC-C
Confidence 3456777888888888876552 5677788888888888888888877664321111000 000000000000 0
Q ss_pred chhhhhcccccCCchhhhhhhc-CCCChhH----HHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHhhhccCcHH
Q 004235 456 DGLKRGFQSIDSSDYQMDEAVS-DGNSSEI----EEVAKEWEHALWQ---NTMDKELNELNKRLEQKESEMKLFGDIDTE 527 (766)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~e~e~~~~q---~~l~~EL~eLnk~Le~KE~e~k~~~~~~~~ 527 (766)
...+..+- +.+.--+.... ..+.... ......+++...| ..+..++..++++|...+.+. +
T Consensus 250 ~~ykerlm---Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~er------d-- 318 (1195)
T KOG4643|consen 250 TTYKERLM---DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSER------D-- 318 (1195)
T ss_pred Cccchhhh---hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhh------h--
Confidence 00000000 00000000000 0000000 0000112222211 235566666666666554432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------Cccchhhhhhh------HHHHH--HHHHHHHHHHH--
Q 004235 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN------SDGHTQKMQDG------HTLKL--KALEAQILELK-- 591 (766)
Q Consensus 528 ~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~------~~~~~~kl~e~------~~~kl--~~Le~el~~Lk-- 591 (766)
.-..|+.+|..|+..|+.+...|...+.-...- -+.......++ |..-| ..+-+.+.+++
T Consensus 319 ----tdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqss 394 (1195)
T KOG4643|consen 319 ----TDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSS 394 (1195)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhh
Confidence 123678888888888888887777665543210 01111111111 11100 01111222222
Q ss_pred ---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004235 592 ---KKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ 629 (766)
Q Consensus 592 ---~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~ 629 (766)
.....|..|.+...+-+.++..|...|++|++++++|-
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELE 435 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 23333666667777889999999999999999999863
No 51
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.44 E-value=5.3 Score=52.28 Aligned_cols=22 Identities=14% Similarity=0.445 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhh
Q 004235 499 TMDKELNELNKRLEQKESEMKL 520 (766)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~e~k~ 520 (766)
.+..++..+.++|+..+..+..
T Consensus 796 r~~~ei~~l~~qie~l~~~l~~ 817 (1311)
T TIGR00606 796 RFQMELKDVERKIAQQAAKLQG 817 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3456777777777776666554
No 52
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.37 E-value=0.5 Score=49.37 Aligned_cols=118 Identities=22% Similarity=0.255 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 574 DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL 653 (766)
Q Consensus 574 e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qL 653 (766)
++++.....++.+|.+++.+...-...+ -..+.+.....|..||+..|.+.+.|...|-+ -.......++++.-|
T Consensus 55 e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~----l~~~~~~l~~~i~~l 129 (239)
T COG1579 55 EDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAE----LMEEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3456666777777777776666555555 66677778888888888888888777655543 333344456666666
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 654 KKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELL 696 (766)
Q Consensus 654 kk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l 696 (766)
+.+-.+.+..+.-.+...+---..+..+..+...-...|+.-+
T Consensus 130 ~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 130 KERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666555554444444444444444444444444443
No 53
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.34 E-value=5.7 Score=51.51 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=50.1
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecc-cCCCCccccC-CCCC------CCCcccchHHHHHHH
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQ-TGSGKTYTMG-TGLR------EGFQTGLIPQVMNAL 118 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGq-TGSGKTyTm~-g~~~------~~~~~Giipr~~~~L 118 (766)
.=.||.-|-|..+ .-.||+.. + -+|--|||++|-- .|-|=.|-.. ++|. .....++.+.....+
T Consensus 55 rksF~~yYLP~~n-SyIIYEY~-R------~~G~~~~vvl~~~s~g~~V~YRFId~~y~~e~fi~~~~~~~~~~~~~~e~ 126 (1201)
T PF12128_consen 55 RKSFDDYYLPYSN-SYIIYEYQ-R------EDGQLCCVVLSRKSDGRGVQYRFIDAPYQRELFIDENNGDLVQALSMWEL 126 (1201)
T ss_pred hhhHHHHcCCCCC-ceEEEeee-c------cCCceeEEEEeecCCCCceeeeeccCccchhhcccccCccccccccHHHH
Confidence 3456655556543 56777652 2 2376677777743 2223347664 3333 122245677788888
Q ss_pred HHHHHhccccceeeEEeehhhhhcceee
Q 004235 119 FNKIETLRHQMEFQLHVSFIEILKEEVR 146 (766)
Q Consensus 119 F~~i~~~~~~~~~~v~vS~~EIynE~v~ 146 (766)
+..+.. ....++=.++ +.=|..-|+
T Consensus 127 ~r~~~~--~gv~~S~~i~-~~eYR~IIq 151 (1201)
T PF12128_consen 127 IRELRR--KGVQVSRKIT-TSEYRAIIQ 151 (1201)
T ss_pred HHHHHh--CCCeeecCcC-HHHHHHHHc
Confidence 888876 3556666666 554544443
No 54
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.28 E-value=3.3 Score=48.27 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004235 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEG 657 (766)
Q Consensus 607 ~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~ 657 (766)
.|..|.+|..+|+++++.-+.++-.-+.+...-...-..+..+|.+|+++.
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666655555555555555555555443
No 55
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=2.2 Score=50.53 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=12.6
Q ss_pred cccchHHHHHHHHHHHH
Q 004235 107 QTGLIPQVMNALFNKIE 123 (766)
Q Consensus 107 ~~Giipr~~~~LF~~i~ 123 (766)
..||-+.++..|+....
T Consensus 43 qS~LP~~VLaqIWALsD 59 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIWALSD 59 (1118)
T ss_pred hcCCChHHHHHHHHhhh
Confidence 35788888888887544
No 56
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.24 E-value=4.3 Score=49.09 Aligned_cols=189 Identities=19% Similarity=0.254 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC----cHHHHH--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCCccchh
Q 004235 501 DKELNELNKRLEQKESEMKLFGDI----DTEALR--HHFGKKIMELEEEKRIV----QQERDRLLAEIENLAANSDGHTQ 570 (766)
Q Consensus 501 ~~EL~eLnk~Le~KE~e~k~~~~~----~~~~~k--~~ye~kl~eLe~ei~~l----q~Erd~Ll~~l~~~~~~~~~~~~ 570 (766)
...+.+|.-.|+++.++|..-+.- .+-.|+ .+|..+|.+---+.++| ..++.++..+++...+. .....
T Consensus 338 kEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE-~~eL~ 416 (1243)
T KOG0971|consen 338 KERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE-LEELR 416 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 455667788888887887654311 112222 12333333332233332 22334445555544321 22345
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 004235 571 KMQDGHTLKLKALEAQILELKKKQES-------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEA-EQFRQW 642 (766)
Q Consensus 571 kl~e~~~~kl~~Le~el~~Lk~k~~e-------~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~-~~~r~~ 642 (766)
+++|...+++..+|..|++|+..... -.+|-..+-.-|++++.|..+|.+|.+. ..|.|+. +-.++.
T Consensus 417 r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal-----ee~~EQL~Esn~el 491 (1243)
T KOG0971|consen 417 RQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL-----EEMNEQLQESNREL 491 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 67788889999999999999965443 3344456778899999999999999764 3444443 334555
Q ss_pred HHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 643 KASREKELLKLKK---EGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (766)
Q Consensus 643 k~~~~kEi~qLkk---~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~ 698 (766)
.....+||-+++= +..++.. .-++..++++..++|=. |-++..+..|.+.-+.
T Consensus 492 e~DLreEld~~~g~~kel~~r~~--aaqet~yDrdqTI~KfR-elva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 492 ELDLREELDMAKGARKELQKRVE--AAQETVYDRDQTIKKFR-ELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 6666677776632 2211111 12355566666665432 3344455555554443
No 57
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.20 E-value=1.4 Score=51.99 Aligned_cols=124 Identities=21% Similarity=0.309 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Q 004235 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHK---- 606 (766)
Q Consensus 531 ~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k---- 606 (766)
..+++++..+..+...++.+.+.+..++.++... -+.|...|+.++.++..++..........+.-..
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~--------i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~C 287 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD--------IEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVC 287 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3455666666666666666666666666655311 1347777888888888888777666665553311
Q ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 004235 607 ---------SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFE 663 (766)
Q Consensus 607 ---------~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~e 663 (766)
....+..|..+|..++.+.-.|..++.+-.+..+++.. ..+++..++++-+.....
T Consensus 288 p~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~-~~~~i~el~~~i~~~~~~ 352 (562)
T PHA02562 288 PTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNE-QSKKLLELKNKISTNKQS 352 (562)
T ss_pred CCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 14566666666666666666655555544444443222 344444444444333333
No 58
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.17 E-value=2.5 Score=45.93 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=59.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKEL 650 (766)
Q Consensus 571 kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi 650 (766)
.+..-|..++.++..+...-..... .....-......+..|+.+|..++.++..|-+++.+=-..+..........|
T Consensus 188 e~e~~y~~k~~~l~~~~~~~~~~~~---~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i 264 (312)
T PF00038_consen 188 ELEEWYQSKLEELRQQSEKSSEELE---SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEI 264 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccc---hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 4455677777777776655332222 2222333455567788888888888888888877776666666666666666
Q ss_pred HHHHHhhhhhHHHHHHHH
Q 004235 651 LKLKKEGRKNEFERHKLE 668 (766)
Q Consensus 651 ~qLkk~~rk~~~ei~~L~ 668 (766)
..|..+-..-..+|....
T Consensus 265 ~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 265 AELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHH
Confidence 666666555555555544
No 59
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.01 E-value=7.9 Score=50.08 Aligned_cols=6 Identities=33% Similarity=0.462 Sum_probs=2.2
Q ss_pred HHHHHH
Q 004235 386 QQLKYL 391 (766)
Q Consensus 386 ~~i~~l 391 (766)
.++..+
T Consensus 674 ~~l~~~ 679 (1163)
T COG1196 674 EELAEL 679 (1163)
T ss_pred HHHHHH
Confidence 333333
No 60
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.00 E-value=4.4 Score=47.15 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004235 631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRK 681 (766)
Q Consensus 631 kmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK 681 (766)
++-+.+...|..+....+|...|+........+|.+|.+..++-..-|+.+
T Consensus 340 qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEe 390 (546)
T PF07888_consen 340 QLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEE 390 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433334444445544444433333333
No 61
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=6.7 Score=48.93 Aligned_cols=121 Identities=23% Similarity=0.291 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 004235 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH---TLKLKALEAQILELKKKQE----SQVELLKQK 604 (766)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~---~~kl~~Le~el~~Lk~k~~----e~~~l~k~k 604 (766)
..+.++..|+......+.+.++.+..+.. .+..++++. ++.|..+..++.+.+.+.+ +..-|+...
T Consensus 444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~~-------~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~ 516 (1293)
T KOG0996|consen 444 KCQTEIEQLEELLEKEERELDEILDSLKQ-------ETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRH 516 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555543 233333333 3333333333333332221 122233344
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004235 605 HKSDEAAKRLQAEIQSIKAQ---KVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRK 659 (766)
Q Consensus 605 ~k~e~~i~~L~~Ei~~mK~~---kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk 659 (766)
...-.++..|+.-+..+... ++..+..++++...........+|++.+++++.+-
T Consensus 517 ~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~ 574 (1293)
T KOG0996|consen 517 ETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERN 574 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHH
Confidence 44445555666666665443 34456666777777666677777777777766553
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.95 E-value=1.8 Score=53.36 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=45.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 004235 601 LKQKHKSDEAAKRLQAEIQSIKAQKVQLQN---KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMV 677 (766)
Q Consensus 601 ~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~k---kmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~v 677 (766)
-..+.+.+.+++.|+.|+..|..+-+.|-. ..+++...-...+-..+.+|.+|++.-+-..-+|..|+.
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~-------- 464 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK-------- 464 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 334444444444444444444443222211 122333333334444667888898887777777777775
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004235 678 LQRKTEEAAIATKRLKELLE 697 (766)
Q Consensus 678 LkrK~eEa~a~~krlk~~l~ 697 (766)
=|+..+.+.-...-.+|.
T Consensus 465 --~k~dkvs~FG~~m~~lL~ 482 (1074)
T KOG0250|consen 465 --TKTDKVSAFGPNMPQLLR 482 (1074)
T ss_pred --cccchhhhcchhhHHHHH
Confidence 355555555555444443
No 63
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.94 E-value=3 Score=46.91 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIE 559 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~ 559 (766)
..+..++.++..++.+++++...+.
T Consensus 73 ~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 73 TEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 3344444444444444444444443
No 64
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.94 E-value=9 Score=50.20 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmk 633 (766)
.+..+..++.++..++++ ...+.....+...+|..|+..|..++..+.++-.++.
T Consensus 827 le~ei~~~~~el~~l~~~---~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~ 881 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSK---IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444332 2335566667778888888888888877777766444
No 65
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.86 E-value=1.4 Score=54.76 Aligned_cols=149 Identities=23% Similarity=0.277 Sum_probs=80.2
Q ss_pred HhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHH
Q 004235 518 MKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRL--------LAEIENLAANSDGHTQKMQDGHTLKLKALEAQILE 589 (766)
Q Consensus 518 ~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~L--------l~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~ 589 (766)
++.+.+...+.++-+|+.++..++++...+..|...+ ++++.+.- ++++..+ +.-+..+.+++.++.-
T Consensus 657 ~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~e~~~~e~~~~l--seek~ar--~k~e~~~~~i~~e~e~ 732 (1317)
T KOG0612|consen 657 QERISDSEKEALEIKLERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKL--SEEKSAR--EKAENLLLEIEAELEY 732 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh--cccccHH--HHHHHHHHHHHHHHHH
Confidence 3334433344688899999999999999999998877 22222211 1111111 1112333445555555
Q ss_pred HHH---------------HHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 004235 590 LKK---------------KQESQVELLKQKHKSDEAA---KRLQAEIQSIKAQKVQL---QNKIKQEAEQFRQWKASREK 648 (766)
Q Consensus 590 Lk~---------------k~~e~~~l~k~k~k~e~~i---~~L~~Ei~~mK~~kV~L---~kkmkee~~~~r~~k~~~~k 648 (766)
|+. +.......++++.+-++.+ ..++.|+. ++.+-|.. .++|+++...++..|...+.
T Consensus 733 L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs-sq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~ 811 (1317)
T KOG0612|consen 733 LSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK-SQEQEVNTKMLEKQLKKLLDELAELKKQLEE 811 (1317)
T ss_pred HhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh-hHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 541 1111222222333222222 22334444 44444443 77888888888888888888
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Q 004235 649 ELLKLKKEGRKNEFERHKLEALN 671 (766)
Q Consensus 649 Ei~qLkk~~rk~~~ei~~L~~~~ 671 (766)
+.+||+...+-.-..+..++...
T Consensus 812 ~~~q~~~~~~~~~~~~k~lq~~l 834 (1317)
T KOG0612|consen 812 ENAQLRGLNRSAWGQMKELQDQL 834 (1317)
T ss_pred HHHHhhcccccchhhhHHHHHHH
Confidence 88888876665444444444333
No 66
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.77 E-value=1.9 Score=47.63 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLKALEAQILELKKKQES-------QVELL-------KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e-------~~~l~-------k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~ 641 (766)
.=||+..||.+-.-|++|..+ -..+- ..-...-.-|..|++||.+++.+-..-++.-.++..++++
T Consensus 206 LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~ 285 (552)
T KOG2129|consen 206 LWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRA 285 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888888877754 01111 1112233457888999999998888888888888888888
Q ss_pred HHHHHHHHHHHHH
Q 004235 642 WKASREKELLKLK 654 (766)
Q Consensus 642 ~k~~~~kEi~qLk 654 (766)
.+...+-|..+|.
T Consensus 286 Ee~~~reen~rlQ 298 (552)
T KOG2129|consen 286 EEVDHREENERLQ 298 (552)
T ss_pred HHhhHHHHHHHHH
Confidence 7777777776664
No 67
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.63 E-value=7.4 Score=48.34 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=14.3
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
|-+.. |..|+.||||+-.|
T Consensus 61 g~~vN-fI~G~NGSGKSAIl 79 (1074)
T KOG0250|consen 61 GPRVN-FIVGNNGSGKSAIL 79 (1074)
T ss_pred CCCce-EeecCCCCcHHHHH
Confidence 44444 77799999999876
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.54 E-value=2.1 Score=51.87 Aligned_cols=72 Identities=22% Similarity=0.392 Sum_probs=38.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHH
Q 004235 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQ-------------------------FRQWKASREKELLKLK 654 (766)
Q Consensus 600 l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~-------------------------~r~~k~~~~kEi~qLk 654 (766)
|.+.+++.-..+..|..-|.+...+|+.|=+++.+|-.. -|+-++..|.|+-+|+
T Consensus 479 L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr 558 (697)
T PF09726_consen 479 LVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLR 558 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555443 3334455555666666
Q ss_pred HhhhhhHHHHHHHHHHH
Q 004235 655 KEGRKNEFERHKLEALN 671 (766)
Q Consensus 655 k~~rk~~~ei~~L~~~~ 671 (766)
.+.+..+.++..|+...
T Consensus 559 ~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 559 RELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666655433
No 69
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=5.5 Score=45.69 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhCC---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 378 SSDMQKLRQQLKYLQAELCARAGG---------APSDEVQVLKGRIAWLEATNEDLCQELHEYR 432 (766)
Q Consensus 378 ~~~i~~L~~~i~~l~~el~~~~~~---------~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~ 432 (766)
...+..|+.+|..|-.+|...... ...++-..|+.+...|+.+.+..+.++....
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtk 70 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTK 70 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999888654211 1123334455555555555555555554443
No 70
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.50 E-value=7.8 Score=46.33 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004235 378 SSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (766)
Q Consensus 378 ~~~i~~L~~~i~~l~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 440 (766)
..++..++.||..||..+... ..+.+.|.+-++.++....+-.-++++..++...+++
T Consensus 98 Eddlk~~~sQiriLQn~c~~l-----E~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRL-----EMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345677788888887766543 2345566666666666655555566666665554443
No 71
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.40 E-value=5 Score=43.46 Aligned_cols=116 Identities=27% Similarity=0.328 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L 614 (766)
+|+..|++|+..|..|...|..+-.+ ..++.+.|-.+.-+.|.+...+|+.| ...-.+..+.....
T Consensus 167 ~Klk~LEeEN~~LR~Ea~~L~~et~~----~EekEqqLv~dcv~QL~~An~qia~L----------seELa~k~Ee~~rQ 232 (306)
T PF04849_consen 167 EKLKSLEEENEQLRSEASQLKTETDT----YEEKEQQLVLDCVKQLSEANQQIASL----------SEELARKTEENRRQ 232 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhh----ccHHHHHHHHHHHHHhhhcchhHHHH----------HHHHHHHHHHHHHH
Confidence 66677777777777666666544432 22233333333333344444444333 33444555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004235 615 QAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (766)
Q Consensus 615 ~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~ 668 (766)
+.||..+-++-|.|.++.|.=+....+. ..-+...|.-.+.-..|+.-|+
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL----~q~L~~ske~Q~~L~aEL~elq 282 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEEL----QQHLQASKESQRQLQAELQELQ 282 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899988887655443322 1222223434444444555544
No 72
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.12 E-value=12 Score=46.15 Aligned_cols=43 Identities=16% Similarity=0.347 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQF 639 (766)
Q Consensus 597 ~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~ 639 (766)
+...+..+...+-.+++|..|+..|+.-+....+.|..=.++|
T Consensus 894 ~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 894 QEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKH 936 (1174)
T ss_pred HHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence 4556667777777888888888888888877777776555554
No 73
>PRK02224 chromosome segregation protein; Provisional
Probab=94.84 E-value=15 Score=45.96 Aligned_cols=14 Identities=36% Similarity=0.574 Sum_probs=11.7
Q ss_pred EeecccCCCCcccc
Q 004235 85 LAYGQTGSGKTYTM 98 (766)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (766)
+-+|++|||||..+
T Consensus 27 ~i~G~Ng~GKStil 40 (880)
T PRK02224 27 VIHGVNGSGKSSLL 40 (880)
T ss_pred EEECCCCCCHHHHH
Confidence 34899999999875
No 74
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.80 E-value=13 Score=45.15 Aligned_cols=93 Identities=25% Similarity=0.357 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHhhhHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELL---K-QKHKSDEA 610 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~---k-~k~k~e~~ 610 (766)
..+.-|.+++..|+.+.+=|.+++++.. ++.... ..| .+++||.+-..||...-...-|. | ..+|..+.
T Consensus 332 ~eve~lkEr~deletdlEILKaEmeekG--~~~~~~---ss~--qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~ke 404 (1243)
T KOG0971|consen 332 QEVEALKERVDELETDLEILKAEMEEKG--SDGQAA---SSY--QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKE 404 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCccc---chH--HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3455566666666666666777777752 222111 112 33455555555553322211111 0 12233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 611 AKRLQAEIQSIKAQKVQLQNKIKQ 634 (766)
Q Consensus 611 i~~L~~Ei~~mK~~kV~L~kkmke 634 (766)
+.+++.|+..++++|-.|.+++-+
T Consensus 405 lE~k~sE~~eL~r~kE~Lsr~~d~ 428 (1243)
T KOG0971|consen 405 LEKKNSELEELRRQKERLSRELDQ 428 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888887643
No 75
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.74 E-value=14 Score=45.00 Aligned_cols=52 Identities=23% Similarity=0.230 Sum_probs=32.3
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 371 VVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHE 430 (766)
Q Consensus 371 ~vn~d~~~~~i~~L~~~i~~l~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~ 430 (766)
..+.|+....+..+..+++.+..++.. .....+..+..++..+..+.-++.+
T Consensus 325 ~sqkd~~~~~~~~~~~e~~~~~~~l~~--------~~~ear~~~~q~~~ql~~le~~~~e 376 (980)
T KOG0980|consen 325 ASQKDPRELQIEQLSREVAQLKAQLEN--------LKEEARRRIEQYENQLLALEGELQE 376 (980)
T ss_pred cccCChhhHHHHHHHHHHHHHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667788888888888777632 2334455566666666665555544
No 76
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.74 E-value=4.7 Score=42.32 Aligned_cols=95 Identities=17% Similarity=0.281 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004235 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~ 613 (766)
+.++..++.++..|+.+...+-..|.++... .++...-.+.|+.++..|+.++.+.-..... .-+.-.+.+..|..
T Consensus 133 EeR~e~~E~ki~eLE~el~~~~~~lk~lE~~-~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~---aE~~v~~Le~~id~ 208 (237)
T PF00261_consen 133 EERAEAAESKIKELEEELKSVGNNLKSLEAS-EEKASEREDEYEEKIRDLEEKLKEAENRAEF---AERRVKKLEKEIDR 208 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 5777788888888888888887777765421 1122222344555555555555444322221 11223344555666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004235 614 LQAEIQSIKAQKVQLQNKI 632 (766)
Q Consensus 614 L~~Ei~~mK~~kV~L~kkm 632 (766)
|..+|...|.....+.+-|
T Consensus 209 le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 209 LEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666665554444433
No 77
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.55 E-value=17 Score=45.32 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 663 ERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (766)
Q Consensus 663 ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~ 697 (766)
.|..|+..+..-.+.|-+|.-|.+-+++|+...|.
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 36666777777788888999999999999988775
No 78
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.54 E-value=13 Score=43.85 Aligned_cols=92 Identities=14% Similarity=0.217 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN----------SDGHTQKMQDGHTLKLKALEAQILELKKKQESQVEL 600 (766)
Q Consensus 531 ~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~----------~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l 600 (766)
..|++.|..++.++..++.+.+.+-..+...... .+. ..++ ......+..|+.++..+..+..+....
T Consensus 251 ~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-~~~~-~~l~d~i~~l~~~l~~l~~~i~~~~~~ 328 (562)
T PHA02562 251 EDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG-PDRI-TKIKDKLKELQHSLEKLDTAIDELEEI 328 (562)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488888889999999888888887776654210 011 1111 223334455555555555555544444
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 004235 601 LKQKHKSDEAAKRLQAEIQSIKAQ 624 (766)
Q Consensus 601 ~k~k~k~e~~i~~L~~Ei~~mK~~ 624 (766)
.....+...++..++.+|...+..
T Consensus 329 ~~~~~~~~~~i~el~~~i~~~~~~ 352 (562)
T PHA02562 329 MDEFNEQSKKLLELKNKISTNKQS 352 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555554444
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.53 E-value=4.7 Score=42.26 Aligned_cols=138 Identities=21% Similarity=0.337 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHH
Q 004235 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKL 580 (766)
Q Consensus 501 ~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl 580 (766)
..++..+|+.+..++.+++. |+.++..++.+|..+..-.++....|.+. + ..+.+
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~------------le~qv~~~e~ei~~~r~r~~~~e~kl~~v---~----------~~~e~ 91 (239)
T COG1579 37 KAELEALNKALEALEIELED------------LENQVSQLESEIQEIRERIKRAEEKLSAV---K----------DEREL 91 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c----------cHHHH
Confidence 34555566666555544432 23445555555555555554444444221 1 13445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004235 581 KALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKN 660 (766)
Q Consensus 581 ~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~ 660 (766)
.+|+.++..++.... ..+..+..|..++..+.....-|..+|...-..|...+..-+-++..++++..
T Consensus 92 ~aL~~E~~~ak~r~~----------~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~-- 159 (239)
T COG1579 92 RALNIEIQIAKERIN----------SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ-- 159 (239)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 666666655554333 23344455555555555555555555555555666666666666665554432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 661 EFERHKLEALNQRQKMVLQRKTEE 684 (766)
Q Consensus 661 ~~ei~~L~~~~~~q~~vLkrK~eE 684 (766)
.+..|...|+.++..
T Consensus 160 ---------~~~~~~~~L~~~l~~ 174 (239)
T COG1579 160 ---------ELSSKREELKEKLDP 174 (239)
T ss_pred ---------HHHHHHHHHHHhcCH
Confidence 344555566677654
No 80
>PRK02224 chromosome segregation protein; Provisional
Probab=94.51 E-value=18 Score=45.33 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=9.2
Q ss_pred eeeCCCCCchhhhhhh
Q 004235 52 HVYGNGGSPSSAMFGE 67 (766)
Q Consensus 52 ~Vf~~~~s~q~~vy~~ 67 (766)
-|+|++++.-..|++.
T Consensus 27 ~i~G~Ng~GKStil~a 42 (880)
T PRK02224 27 VIHGVNGSGKSSLLEA 42 (880)
T ss_pred EEECCCCCCHHHHHHH
Confidence 4677776655555443
No 81
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.41 E-value=0.025 Score=58.63 Aligned_cols=49 Identities=24% Similarity=0.459 Sum_probs=30.9
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..||||.-+..+ + +...|.. +..+.+.--..||. ++-||++|+||||-|
T Consensus 3 ~~~tFdnfv~g~-~-N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVGE-S-NELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--TT-T-THHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHH
T ss_pred CCCccccCCcCC-c-HHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHH
Confidence 369999887432 3 4556643 45555552233555 688999999999977
No 82
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.32 E-value=9.4 Score=41.34 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 004235 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ---------EAEQF---RQWKASREKELLKLKKEGRKNEFERHKLEALNQ 672 (766)
Q Consensus 605 ~k~e~~i~~L~~Ei~~mK~~kV~L~kkmke---------e~~~~---r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~ 672 (766)
+..+--+.+|..-+..|-+-|-.|..++-. ++..+ ...=....--|..|+.+-.+-...+...++.+.
T Consensus 174 ~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~ 253 (310)
T PF09755_consen 174 QEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHS 253 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777888777777777653 11100 000022233344455444444445555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 673 RQKMVLQRKTEEAAIATKRLKELLE 697 (766)
Q Consensus 673 ~q~~vLkrK~eEa~a~~krlk~~l~ 697 (766)
-+-..+-.+-.++-..|+||+..|.
T Consensus 254 ~k~~~~~~eek~ireEN~rLqr~L~ 278 (310)
T PF09755_consen 254 EKMAQYLQEEKEIREENRRLQRKLQ 278 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445566667777776664
No 83
>PRK09039 hypothetical protein; Validated
Probab=94.19 E-value=4.7 Score=44.79 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004235 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEA 610 (766)
Q Consensus 531 ~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~ 610 (766)
...+..|.+|+.++..++.+|++|...+...... ...-+.++..|+.+|..++. .-...-.+
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~--------~~~~~~~~~~l~~~L~~~k~----------~~se~~~~ 138 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLAELAGA--------GAAAEGRAGELAQELDSEKQ----------VSARALAQ 138 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------cchHHHHHHHHHHHHHHHHH----------HHHHhhHH
Confidence 3456888999999999999998887766532100 01123334444443333332 22234455
Q ss_pred HHHHHHHHHHHHHHH
Q 004235 611 AKRLQAEIQSIKAQK 625 (766)
Q Consensus 611 i~~L~~Ei~~mK~~k 625 (766)
+..|+.+|..||.|-
T Consensus 139 V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 139 VELLNQQIAALRRQL 153 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777788888888773
No 84
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.16 E-value=0.75 Score=43.07 Aligned_cols=90 Identities=24% Similarity=0.414 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L 614 (766)
..+..|..++..++.+||.+..++-.+-...+ .+ .....++..|+.++.+|+.+....-.|+ -...+.+..|
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e----~~-~~~~~~~~~L~~el~~l~~ry~t~Lell---GEK~E~veEL 101 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENE----EL-RALKKEVEELEQELEELQQRYQTLLELL---GEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHH
Confidence 34556677777777777777777766432111 11 2246677889999988887655544444 4556789999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004235 615 QAEIQSIKAQKVQLQNKI 632 (766)
Q Consensus 615 ~~Ei~~mK~~kV~L~kkm 632 (766)
+.+|.+||..--..+..|
T Consensus 102 ~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 102 RADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999998765555443
No 85
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.10 E-value=9.5 Score=44.40 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc-C---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----Cccc---
Q 004235 500 MDKELNELNKRLEQKESEMKLFGD-I---DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN----SDGH--- 568 (766)
Q Consensus 500 l~~EL~eLnk~Le~KE~e~k~~~~-~---~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~----~~~~--- 568 (766)
++.++.++..+++..|..+..+.. + .++. ...+..++..++.+...++.++..+...+..+... ....
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~ 244 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPDQ-EGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAG 244 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcc
Confidence 567778888888877777665531 1 1111 12234556666666666665555444444332210 0000
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhH
Q 004235 569 TQKMQDGHTLKLKALEAQILELKKKQES-QVELLKQKHKSD 608 (766)
Q Consensus 569 ~~kl~e~~~~kl~~Le~el~~Lk~k~~e-~~~l~k~k~k~e 608 (766)
....-...+.+|.+++.++..|...-.+ |-++..++.+-+
T Consensus 245 ~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~ 285 (498)
T TIGR03007 245 SSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIA 285 (498)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 0111234677899999999988764443 555555544333
No 86
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.98 E-value=30 Score=45.86 Aligned_cols=163 Identities=21% Similarity=0.253 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCccchhhhhhhH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLA---ANSDGHTQKMQDGH---TLKLKALEAQILELKKKQES----QVELLKQK 604 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~---~~~~~~~~kl~e~~---~~kl~~Le~el~~Lk~k~~e----~~~l~k~k 604 (766)
+++.-|+..|..+..|.+.|...-..+. ..-+...+.+.+++ ..++..++.++..|++...- ..+|....
T Consensus 689 ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~ 768 (1822)
T KOG4674|consen 689 EKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQEL 768 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554443321111 11122233444433 56788888888888864432 55666666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (766)
Q Consensus 605 ~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eE 684 (766)
++-......|+.-+..|+.++-.+-.---+.-.++...-...++++..||++......+++.+...+.+|-.=++...++
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~ 848 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDE 848 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66677777777777777777766655555555666677778889999999999999999999988888888777777777
Q ss_pred HHHHHHHHHHHHH
Q 004235 685 AAIATKRLKELLE 697 (766)
Q Consensus 685 a~a~~krlk~~l~ 697 (766)
......-+...+.
T Consensus 849 ~~~~~~~~~~~l~ 861 (1822)
T KOG4674|consen 849 LESELKSLLTSLD 861 (1822)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666664
No 87
>PRK03918 chromosome segregation protein; Provisional
Probab=93.90 E-value=23 Score=44.28 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=11.8
Q ss_pred EeecccCCCCcccc
Q 004235 85 LAYGQTGSGKTYTM 98 (766)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (766)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 36799999999775
No 88
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.89 E-value=0.029 Score=59.89 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=29.7
Q ss_pred hhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 66 GECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 66 ~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+-.+.|++..+.+--++.|+.-|+||||||+||
T Consensus 110 ~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 110 ELGLPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred HcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 344678899999999999999999999999999
No 89
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.77 E-value=10 Score=40.31 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004235 634 QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (766)
Q Consensus 634 ee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~ 668 (766)
.........+..+..=+++|+-+.-+...++.-|+
T Consensus 183 ~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 183 TQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333444444444444444444444444444444
No 90
>PRK06893 DNA replication initiation factor; Validated
Probab=93.65 E-value=0.039 Score=57.51 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=32.4
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..++||..++.. + .. .+..+...+-.++|..++-||++|+||||.+
T Consensus 11 ~~~~fd~f~~~~-~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 11 DDETLDNFYADN-N-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CcccccccccCC-h-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 578999999643 2 21 1223334444578888999999999999988
No 91
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.56 E-value=18 Score=42.04 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (766)
Q Consensus 605 ~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eE 684 (766)
+.-+..+..|+.++..||++ |.++.===+|.++....+.+..|+|..+..+.-+-..++-.++.+.+.+..-+..+--+
T Consensus 304 e~kEeE~e~lq~~~d~Lk~~-Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~ 382 (581)
T KOG0995|consen 304 EEKEEEIEKLQKENDELKKQ-IELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFID 382 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777654 33332223455555566666777888887777777777777777666666666666666
Q ss_pred HHHHHHHHHHH
Q 004235 685 AAIATKRLKEL 695 (766)
Q Consensus 685 a~a~~krlk~~ 695 (766)
-..+.+||+=.
T Consensus 383 ~~~l~~~i~l~ 393 (581)
T KOG0995|consen 383 LNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHH
Confidence 66666666643
No 92
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=93.55 E-value=10 Score=39.03 Aligned_cols=77 Identities=16% Similarity=0.395 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q 004235 529 LRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-----QVELLKQ 603 (766)
Q Consensus 529 ~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e-----~~~l~k~ 603 (766)
+-..|..++.+|+.+...-.++...+-.+|..+. ...++++..+.+++.|+.++...+....+ +.+++..
T Consensus 41 l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-----~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~E 115 (206)
T PF14988_consen 41 LVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK-----EFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQE 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777766666666666666666553 34556666666667776666665543322 4444444
Q ss_pred HhhhHHH
Q 004235 604 KHKSDEA 610 (766)
Q Consensus 604 k~k~e~~ 610 (766)
|..-+.+
T Consensus 116 K~~LEke 122 (206)
T PF14988_consen 116 KARLEKE 122 (206)
T ss_pred HHHHHHH
Confidence 4444333
No 93
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.50 E-value=13 Score=40.28 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 626 VQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (766)
Q Consensus 626 V~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~~ 699 (766)
..-....++|....+..-.....+|..|+.+...-+..|..|+..+..+..-++......-+....++..+..+
T Consensus 208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~ 281 (312)
T PF00038_consen 208 SEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 34455667777777777788888888888888888888888887777776666666655555555555555443
No 94
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.40 E-value=6.8 Score=37.88 Aligned_cols=87 Identities=23% Similarity=0.334 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHH
Q 004235 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTL 578 (766)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~ 578 (766)
.+...+..++.....++.++..+. .|+..|+.++..++.....+...+.... +...-.+.+.+
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~------------~K~~~lE~eld~~~~~l~~~k~~lee~~-----~~~~~~E~l~r 80 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQ------------KKNQQLEEELDKLEEQLKEAKEKLEESE-----KRKSNAEQLNR 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHhHHHHHh
Confidence 445666667766666766665442 6666777777777666666666665431 11122347889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 579 KLKALEAQILELKKKQESQVELLK 602 (766)
Q Consensus 579 kl~~Le~el~~Lk~k~~e~~~l~k 602 (766)
|++.||.++....+++.+...-++
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887776554443
No 95
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.13 E-value=18 Score=40.83 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=29.1
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQER 551 (766)
Q Consensus 496 ~q~~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Er 551 (766)
...+|.++|.+++.+|...+..+..+. .+. +..+++|..++..+..|+.+.
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~-~~l----~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETA-DDL----KKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hHH----HHHHhhHHHHHHHHHHHHHHH
Confidence 345566677777777766666655443 111 233466666666666665443
No 96
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.12 E-value=20 Score=44.53 Aligned_cols=129 Identities=17% Similarity=0.259 Sum_probs=75.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhh
Q 004235 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG 575 (766)
Q Consensus 496 ~q~~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~ 575 (766)
.+.+...+..++..++...+-.+.-..+.|+..--...++.+..++.++..+++..+.....+..+ .++...
T Consensus 775 ~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~--------~~~e~k 846 (1141)
T KOG0018|consen 775 LQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI--------EELEKK 846 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH--------HHHHHH
Confidence 366777788888888777766554333334332222344566666666666666666655555443 222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQE 635 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee 635 (766)
-..+...++.++. .....-.++.+...+-+..|..+.+.|......++.|+++-+-+
T Consensus 847 ~k~~~~~~~~e~~---e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~ 903 (1141)
T KOG0018|consen 847 NKSKFEKKEDEIN---EVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLE 903 (1141)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhc
Confidence 1223333344333 33344556667777777778888888888888888887776543
No 97
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.11 E-value=24 Score=42.10 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 004235 502 KELNELNKRLEQKESEMKLF 521 (766)
Q Consensus 502 ~EL~eLnk~Le~KE~e~k~~ 521 (766)
.+..++..++..++..+..+
T Consensus 370 ~~~~~le~~~~l~~k~~~lL 389 (594)
T PF05667_consen 370 AENEELEEELKLKKKTVELL 389 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555444
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.07 E-value=5.4 Score=43.90 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKK 655 (766)
Q Consensus 607 ~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk 655 (766)
...++..+..+|..++.+|.++...|.+-.......+.--..||..||.
T Consensus 235 l~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~ 283 (325)
T PF08317_consen 235 LQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKA 283 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3455666777777777777777776664333222233334445555543
No 99
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.74 E-value=45 Score=44.19 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHH
Q 004235 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALR-HHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (766)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k-~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~ 577 (766)
.++.++.+|+.++..++.+.+...+.....-. ..+..++..+...+..++.+.++....+.... .-.++.+
T Consensus 311 rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeele--------eeleele 382 (1486)
T PRK04863 311 EMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEAD--------EQQEENE 382 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 44556666666665555444332211110000 11234444444455555444444444443321 1112244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 004235 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ------NKIKQEAEQFRQWKASREKELL 651 (766)
Q Consensus 578 ~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~------kkmkee~~~~r~~k~~~~kEi~ 651 (766)
.++..++.++..|+.+.. .+.......+.++..++..|..+...+--+- ..+....+.|..--...+.++.
T Consensus 383 eEleelEeeLeeLqeqLa---elqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~ 459 (1486)
T PRK04863 383 ARAEAAEEEVDELKSQLA---DYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELL 459 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544322 3333444444555555555555555554332 4445555555555555555555
Q ss_pred HHHHhhhhhHHHHHHH
Q 004235 652 KLKKEGRKNEFERHKL 667 (766)
Q Consensus 652 qLkk~~rk~~~ei~~L 667 (766)
.|+.+....+..+..+
T Consensus 460 elE~kL~~lea~leql 475 (1486)
T PRK04863 460 SLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555544444444333
No 100
>PRK06620 hypothetical protein; Validated
Probab=92.65 E-value=0.059 Score=55.67 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=32.7
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcC---EEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N---~tI~aYGqTGSGKTyTm 98 (766)
..|+||..+... + +...|..+ ..+.+. -|+| -.++-||++||||||.+
T Consensus 11 ~~~tfd~Fvvg~-~-N~~a~~~~-~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 11 SKYHPDEFIVSS-S-NDQAYNII-KNWQCG--FGVNPYKFTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CCCCchhhEecc-c-HHHHHHHH-HHHHHc--cccCCCcceEEEECCCCCCHHHHH
Confidence 579999888543 3 55666653 333331 1444 35899999999999998
No 101
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=92.63 E-value=14 Score=38.06 Aligned_cols=120 Identities=23% Similarity=0.264 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004235 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK- 654 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLk- 654 (766)
.+..|-+.++.+..|+..........+.+...+..|..|+.|+..+.......+++|+. +|=..|+..++|+..++
T Consensus 52 Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~---qfl~EK~~LEke~~e~~i 128 (206)
T PF14988_consen 52 LQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAES---QFLQEKARLEKEASELKI 128 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhH
Confidence 34556666667777888888888888999999999999999999999998887777765 56666666666652221
Q ss_pred -HhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 655 -KEGRKNEFER-HKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (766)
Q Consensus 655 -k~~rk~~~ei-~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~ 698 (766)
.=..+...++ .+-+++.-.-...+-.-+--+.+.|.+|+..|..
T Consensus 129 ~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~ 174 (206)
T PF14988_consen 129 LQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQ 174 (206)
T ss_pred HHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1112222222344556666677777777776643
No 102
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.63 E-value=25 Score=41.12 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004235 529 LRHHFGKKIMELEEEKRIVQ 548 (766)
Q Consensus 529 ~k~~ye~kl~eLe~ei~~lq 548 (766)
++..|+.++..|.+++.-+.
T Consensus 198 lr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 198 LRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 55566777777777777766
No 103
>PRK09039 hypothetical protein; Validated
Probab=92.48 E-value=10 Score=42.08 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEA 636 (766)
Q Consensus 605 ~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~ 636 (766)
.....++..|..+|+...++||+-+.++|.+-
T Consensus 168 ~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 168 RESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555667777777777777777666665544
No 104
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=32 Score=41.71 Aligned_cols=22 Identities=32% Similarity=0.246 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004235 676 MVLQRKTEEAAIATKRLKELLE 697 (766)
Q Consensus 676 ~vLkrK~eEa~a~~krlk~~l~ 697 (766)
.|+.-+.++...+.|+.=+-|.
T Consensus 917 ~v~~~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 917 LVLLADQKEKIQALKEALEDLN 938 (970)
T ss_pred HHHHhhHHHHHHHHHHHHHHhC
Confidence 4566666666555555444443
No 105
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.13 E-value=38 Score=41.93 Aligned_cols=12 Identities=42% Similarity=0.711 Sum_probs=8.7
Q ss_pred ecccCCCCcccc
Q 004235 87 YGQTGSGKTYTM 98 (766)
Q Consensus 87 YGqTGSGKTyTm 98 (766)
.|..||||+-..
T Consensus 31 VGrNGSGKSNFF 42 (1200)
T KOG0964|consen 31 VGRNGSGKSNFF 42 (1200)
T ss_pred ecCCCCCchhhH
Confidence 388888887544
No 106
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.06 E-value=54 Score=43.60 Aligned_cols=116 Identities=9% Similarity=0.007 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhcccC
Q 004235 633 KQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELL---EARKSSARENSVN 709 (766)
Q Consensus 633 kee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l---~~~k~~~~~~~~~ 709 (766)
+.|.+.+........+-+..++..-......+.+.+..++++-.-+.+-+++...+..-+-.+. ..-+......+..
T Consensus 1010 ~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~ 1089 (1822)
T KOG4674|consen 1010 QNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHAL 1089 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH
Confidence 4455555555555555555555444444444444454444443333333333322222221111 1111222122211
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004235 710 STGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVY 753 (766)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~wv~~Ele~~~~~~e~~~~~e~~~~~r 753 (766)
.. +-...|.+-..|+++|+.....-.+--....++++++
T Consensus 1090 l~-----e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~q 1128 (1822)
T KOG4674|consen 1090 LS-----EQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQ 1128 (1822)
T ss_pred Hh-----hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1234699999999999998877766666666666655
No 107
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.49 E-value=11 Score=46.30 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 500 MDKELNELNKRLEQKESEMKLFGDI----DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 500 l~~EL~eLnk~Le~KE~e~k~~~~~----~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
|+.++.++.++++..|..+..+... +.+. ..-.+++|.+|+.++..++.++......+.+
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~-~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~ 262 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNN-ATLATQQLAELNTELSRARANRAAAEGTADS 262 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888776655321 1100 0113467888888888877777665444433
No 108
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.46 E-value=45 Score=41.45 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 574 DGHTLKLKALEAQILELKKKQESQVELLK 602 (766)
Q Consensus 574 e~~~~kl~~Le~el~~Lk~k~~e~~~l~k 602 (766)
..++++|++|+++|..++++..+.++-.+
T Consensus 783 ~~re~rlkdl~keik~~k~~~e~~~~~~e 811 (1174)
T KOG0933|consen 783 ANRERRLKDLEKEIKTAKQRAEESSKELE 811 (1174)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888777777666655554
No 109
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.26 E-value=17 Score=43.69 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=47.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHhhhcc--Cc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 498 NTMDKELNELNKRLEQKESEMKLFGD--ID-----TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 498 ~~l~~EL~eLnk~Le~KE~e~k~~~~--~~-----~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
++|.+.|+-||.+|.++|...+.... .+ ++.+.--++.+|.|.....+.||.-.++|+..+++.
T Consensus 397 aqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 397 AQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQ 467 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Confidence 46788999999999988876654431 22 334555577888888888888888888888888775
No 110
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.22 E-value=20 Score=36.92 Aligned_cols=122 Identities=25% Similarity=0.280 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004235 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~ 613 (766)
+++-.....++..+..|||.+.+.|.++..... .+-..|++ +..-+..+++ .=-.++.....-..+
T Consensus 61 ~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs----dl~~ryek----~K~vi~~~k~------NEE~Lkk~~~ey~~~ 126 (207)
T PF05010_consen 61 QKQKELSEAEIQKLLKERDQAYADLNSLEKSFS----DLHKRYEK----QKEVIEGYKK------NEETLKKCIEEYEER 126 (207)
T ss_pred HhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH----HHHHHHHH----HHHHHHHHHH------hHHHHHHHHHHHHHH
Confidence 334445566777888888888888877643222 11111211 1111111111 000111122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 004235 614 LQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (766)
Q Consensus 614 L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~ 669 (766)
+..+=+...+-|..-..+|..-.+.....+....-|+..|+-..||.+..+..|+.
T Consensus 127 l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~ 182 (207)
T PF05010_consen 127 LKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEE 182 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333344444444444444455555666777787778888887777764
No 111
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.22 E-value=0.1 Score=61.54 Aligned_cols=49 Identities=24% Similarity=0.449 Sum_probs=34.2
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|+||..+... + +...|. .+..+++..-.+||. ||-||.+|+||||.+
T Consensus 283 ~~~TFDnFvvG~-s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL 331 (617)
T PRK14086 283 PKYTFDTFVIGA-S-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLL 331 (617)
T ss_pred CCCCHhhhcCCC-c-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHH
Confidence 469999876432 2 344553 345555554457886 899999999999988
No 112
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.12 E-value=3.8 Score=41.65 Aligned_cols=88 Identities=25% Similarity=0.357 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004235 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~ 613 (766)
+.++..|++++..+.+.+.++...|-.....-.....++ ......|..|+.++..|+.+......-++.+.+. +..
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~-~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~---~e~ 148 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKEL-SEKERRLAELEAELAQLEEKIKDLEEELKEKNKA---NEI 148 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 355566666666666666666666554322111111122 2245666677777777666666655555554443 445
Q ss_pred HHHHHHHHHHHH
Q 004235 614 LQAEIQSIKAQK 625 (766)
Q Consensus 614 L~~Ei~~mK~~k 625 (766)
|+.|+..+.-+-
T Consensus 149 l~DE~~~L~l~~ 160 (194)
T PF08614_consen 149 LQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666655433
No 113
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.11 E-value=40 Score=40.18 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 004235 581 KALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (766)
Q Consensus 581 ~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~ 624 (766)
..|++++..-+.-.+...++.+......+....|..||..++..
T Consensus 296 d~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 296 DILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444444444445555555555555555555544
No 114
>PRK09087 hypothetical protein; Validated
Probab=91.10 E-value=0.13 Score=53.66 Aligned_cols=46 Identities=26% Similarity=0.208 Sum_probs=31.6
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|+||.-+..+ + +..+|.. +.....-.|..++-||++||||||.+
T Consensus 16 ~~~~~~~Fi~~~-~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 16 PAYGRDDLLVTE-S-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCCChhceeecC-c-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHH
Confidence 578999988533 2 4556663 33322223556899999999999998
No 115
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.99 E-value=29 Score=38.42 Aligned_cols=31 Identities=42% Similarity=0.606 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 004235 527 EALRHHFGKKIMELEE----EKRIVQQERDRLLAE 557 (766)
Q Consensus 527 ~~~k~~ye~kl~eLe~----ei~~lq~Erd~Ll~~ 557 (766)
..|-...+++|.+|+. |...|+.|+|.|+++
T Consensus 344 AaMEetHQkkiEdLQRqHqRELekLreEKdrLLAE 378 (593)
T KOG4807|consen 344 AAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAE 378 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3466667788887764 677888888999876
No 116
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.82 E-value=0.14 Score=58.51 Aligned_cols=31 Identities=32% Similarity=0.318 Sum_probs=26.4
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCccccC
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm~ 99 (766)
....+..++..=+|.|+.-|+||||||.||+
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 3445677788889999999999999999994
No 117
>PRK03918 chromosome segregation protein; Provisional
Probab=90.79 E-value=53 Score=41.08 Aligned_cols=7 Identities=43% Similarity=0.900 Sum_probs=3.1
Q ss_pred eeCCCCC
Q 004235 53 VYGNGGS 59 (766)
Q Consensus 53 Vf~~~~s 59 (766)
|+|++++
T Consensus 28 i~G~nG~ 34 (880)
T PRK03918 28 IIGQNGS 34 (880)
T ss_pred EEcCCCC
Confidence 4444443
No 118
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=90.50 E-value=0.15 Score=58.44 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=32.4
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..||||.-+.. .+ +...|..+ ..+.+. -..||. +|-||++|+||||.|
T Consensus 100 ~~~tFdnFv~g-~~-n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 100 PDYTFENFVVG-PG-NSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred CCCcccccccC-Cc-hHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHH
Confidence 57999987743 23 45566543 333333 123776 999999999999988
No 119
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.47 E-value=29 Score=39.69 Aligned_cols=119 Identities=11% Similarity=0.156 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---Cccchhhh
Q 004235 500 MDKELNELNKRLEQKESEMKLFGDI----DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKM 572 (766)
Q Consensus 500 l~~EL~eLnk~Le~KE~e~k~~~~~----~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~---~~~~~~kl 572 (766)
++.++.++..+++..|..+..|... ++..-...-..+|.+|+.++..++.++.+....+...... .+-.....
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPI 255 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChH
Confidence 4667777777777777666554321 1110001112578888888888888876666555432100 00001111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHH
Q 004235 573 QDGHTLKLKALEAQILELKKKQES-QVELLKQKHKSDEAAKRLQAEI 618 (766)
Q Consensus 573 ~e~~~~kl~~Le~el~~Lk~k~~e-~~~l~k~k~k~e~~i~~L~~Ei 618 (766)
-...+.+|.+++.++.+|...-.+ |-.+..++.+-+.--..|..||
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~ 302 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEI 302 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 234677788888888877654333 5555544444333333333333
No 120
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.33 E-value=30 Score=37.55 Aligned_cols=97 Identities=24% Similarity=0.296 Sum_probs=58.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HH-
Q 004235 602 KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ----WKASREKELLKLKKEGRKNEFERHKLEALNQR-QK- 675 (766)
Q Consensus 602 k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~----~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~-q~- 675 (766)
++....+--...|+..|..|...|+.|=.+|..|.+-+=. .=...++|...+....-+-..|...|++.-+. |+
T Consensus 99 ~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~ 178 (310)
T PF09755_consen 99 KYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEA 178 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555566667788888888888888888888776654311 11111222222222222333344445444333 33
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHH
Q 004235 676 --MVLQRKTEEAAIATKRLKELLEA 698 (766)
Q Consensus 676 --~vLkrK~eEa~a~~krlk~~l~~ 698 (766)
+-|...++...+.++.|...|+.
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34888999999999999988874
No 121
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.26 E-value=54 Score=40.35 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004235 605 HKSDEAAKRLQAEIQSIKAQ---KVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRK 681 (766)
Q Consensus 605 ~k~e~~i~~L~~Ei~~mK~~---kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK 681 (766)
...+.....|++|+..|... |-..+-|-.....++...+....=||.-|+...++.+.+|..|+...+.=...|+.|
T Consensus 332 ~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek 411 (775)
T PF10174_consen 332 RAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666655421 222233333333344444444444555555555555555555554444444444444
Q ss_pred HHHHHHHHHHHH
Q 004235 682 TEEAAIATKRLK 693 (766)
Q Consensus 682 ~eEa~a~~krlk 693 (766)
-.+...++.||.
T Consensus 412 d~ql~~~k~Rl~ 423 (775)
T PF10174_consen 412 DRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 122
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.14 E-value=30 Score=37.29 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
.++.+|-.++..+..+.+++...+..+
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~l 184 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQEL 184 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665555544
No 123
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.03 E-value=2.7 Score=51.42 Aligned_cols=27 Identities=41% Similarity=0.532 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 534 GKKIMELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
..++..|+.++..|+.+.+.|-..|+.
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554
No 124
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.96 E-value=49 Score=39.37 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.0
Q ss_pred eecCCCCCCHHHHHHHHH
Q 004235 341 ACISPADINAEESLNTLK 358 (766)
Q Consensus 341 a~vSP~~~~~~ETl~TL~ 358 (766)
..|||....|..-++||.
T Consensus 398 s~~ssl~~e~~QRva~lE 415 (961)
T KOG4673|consen 398 SEVSSLREEYHQRVATLE 415 (961)
T ss_pred ccccchHHHHHHHHHHHH
Confidence 357888888888888875
No 125
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.73 E-value=14 Score=45.18 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 668 EALNQRQKMVLQRKTEEAAIATKRLKEL 695 (766)
Q Consensus 668 ~~~~~~q~~vLkrK~eEa~a~~krlk~~ 695 (766)
..+++.=+.+|+.-+++...+.+.+|..
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445678999888888888777754
No 126
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.70 E-value=27 Score=35.98 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 582 ALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELL 651 (766)
Q Consensus 582 ~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~ 651 (766)
+-+.-..+|..-...-+.|.+.-++.-.-|..+...-..+|+.-...+.+++.+..+|..+|.-.+..|.
T Consensus 77 erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~ 146 (207)
T PF05010_consen 77 ERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLE 146 (207)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555556666777888888888888888999999999999999886665444
No 127
>PRK05642 DNA replication initiation factor; Validated
Probab=89.54 E-value=0.23 Score=52.02 Aligned_cols=45 Identities=22% Similarity=0.526 Sum_probs=28.2
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhC---Cc-CEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ---GY-NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~---G~-N~tI~aYGqTGSGKTyTm 98 (766)
..|+||.-+.. + +...+ ..+....+ ++ +..++-||++|+||||-+
T Consensus 14 ~~~tfdnF~~~--~-~~~a~-----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 14 DDATFANYYPG--A-NAAAL-----GYVERLCEADAGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CcccccccCcC--C-hHHHH-----HHHHHHhhccccCCCCeEEEECCCCCCHHHHH
Confidence 46899998832 2 22333 23333222 22 246789999999999987
No 128
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=89.48 E-value=0.22 Score=48.79 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=22.9
Q ss_pred hhHhHHHHHhCC-cCEEEEeecccCCCCccccC
Q 004235 68 CVAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 99 (766)
Q Consensus 68 ~v~plV~~~l~G-~N~tI~aYGqTGSGKTyTm~ 99 (766)
++..+++.+-.+ .+..++..|+||||||++|.
T Consensus 11 ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 11 AIARIINSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp HHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 345555655555 45566777899999999994
No 129
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.38 E-value=33 Score=36.56 Aligned_cols=13 Identities=38% Similarity=0.340 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 004235 534 GKKIMELEEEKRI 546 (766)
Q Consensus 534 e~kl~eLe~ei~~ 546 (766)
+.+|.+|++.|..
T Consensus 86 ~~eI~~~~~~I~~ 98 (265)
T COG3883 86 QKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 130
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=89.33 E-value=51 Score=38.71 Aligned_cols=161 Identities=22% Similarity=0.266 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 004235 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILE-----------LKKKQESQVEL 600 (766)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~-----------Lk~k~~e~~~l 600 (766)
+|-.+..++...++.+..+-+...++|...+ .++.++-..-++++..|...... |-.-..|...+
T Consensus 211 ~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk----~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~ 286 (511)
T PF09787_consen 211 EYLRESGELQEQLELLKAEGESEEAELQQYK----QKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHL 286 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHH
Confidence 3556666666777777666666666665542 12333333334444444441111 22112222222
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004235 601 LKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQR 680 (766)
Q Consensus 601 ~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkr 680 (766)
.-.-...+.+|..|..|+++++.+...-...+++.. +.+.....-++.. ..+.+....++..++....+|..-+..
T Consensus 287 ~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~~~~s~~~~ 362 (511)
T PF09787_consen 287 QEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQP---QELSQQLEPELTT-EAELRLYYQELYHYREELSRQKSPLQL 362 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 234444455566667777777665543222222211 2333333334433 666777888888888888899998888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004235 681 KTEEAAIATKRLKELLEARK 700 (766)
Q Consensus 681 K~eEa~a~~krlk~~l~~~k 700 (766)
|..+-.....+|+..+..+.
T Consensus 363 k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 363 KLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888889998887654
No 131
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.95 E-value=0.25 Score=56.85 Aligned_cols=49 Identities=24% Similarity=0.402 Sum_probs=31.1
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|+||.-... .+ +...|.. +..+.+.--..||. ++-||++|+||||.+
T Consensus 117 ~~~tfd~fv~g-~~-n~~a~~~-~~~~~~~~~~~~~~-l~l~G~~G~GKThL~ 165 (450)
T PRK00149 117 PKYTFDNFVVG-KS-NRLAHAA-ALAVAENPGKAYNP-LFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCcccccccC-CC-cHHHHHH-HHHHHhCcCccCCe-EEEECCCCCCHHHHH
Confidence 57899984422 22 4445543 44444432234554 788999999999988
No 132
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.94 E-value=51 Score=38.23 Aligned_cols=152 Identities=20% Similarity=0.331 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCccchh--
Q 004235 500 MDKELNELNKRLEQKESEMKLFGDIDTEAL--RHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA-----NSDGHTQ-- 570 (766)
Q Consensus 500 l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~--k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~-----~~~~~~~-- 570 (766)
|..|+.-|.+++++--++.-.-..+....+ |....+++.+|+.+...+..|.|.+-..+....+ ..++...
T Consensus 13 lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~Ee 92 (772)
T KOG0999|consen 13 LRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREE 92 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH
Confidence 345555666666554333222222333332 3445677889999999999999998888766421 1111110
Q ss_pred -------hhhhhHHHHHHHHHHHHHHHHHHHH----H-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 571 -------KMQDGHTLKLKALEAQILELKKKQE----S-------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (766)
Q Consensus 571 -------kl~e~~~~kl~~Le~el~~Lk~k~~----e-------~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkm 632 (766)
--.+.|-.|+-+|+.++..++.... + |+.+....+..+.+-.+|+.||...|..-..|+.
T Consensus 93 sLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rlls-- 170 (772)
T KOG0999|consen 93 SLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLS-- 170 (772)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0124678899999999988875433 2 4445555666777778888888888877766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004235 633 KQEAEQFRQWKASREKELLKLKK 655 (766)
Q Consensus 633 kee~~~~r~~k~~~~kEi~qLkk 655 (766)
|-....+......|-|.-||.
T Consensus 171 --eYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 171 --EYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred --HHHHHHHhcchHHHHHHHHhh
Confidence 333344445556666666653
No 133
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.91 E-value=7.3 Score=42.74 Aligned_cols=27 Identities=48% Similarity=0.671 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
..+..++.++..++.|.++++++|..+
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEEL 69 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666555543
No 134
>PRK12377 putative replication protein; Provisional
Probab=88.83 E-value=0.3 Score=51.69 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=33.2
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+||....... .+..++.. +..+++.+..+. ..++-||++|+||||.+
T Consensus 70 ~~tFdnf~~~~~-~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 70 KCSFANYQVQND-GQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLA 118 (248)
T ss_pred cCCcCCcccCCh-hHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHH
Confidence 347886553332 24445543 566777776654 45788999999999998
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.46 E-value=0.29 Score=55.48 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=30.2
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|+||.... +.. +...|.. +..+...--..|| .++-||++|+||||.+
T Consensus 105 ~~~tfd~fi~-g~~-n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 105 PKYTFDNFVV-GKS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCccccccc-CCc-HHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 5789998442 222 4445543 3444443212245 4778999999999988
No 136
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.42 E-value=46 Score=37.01 Aligned_cols=81 Identities=26% Similarity=0.372 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHhhhhccCCCC-CcccCCCChhhhhhhhhcCC--CceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccc
Q 004235 293 GLLALGNVISALGDEKKRREG-VHVPYRDSKLTRLLQDSLGG--NSKTVMIACISPADINAEESLNTLKYANRARNIQNK 369 (766)
Q Consensus 293 SL~aLg~vI~aL~~~~~~~~~-~~vPyRdSkLTrLLqdsLgG--ns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~ 369 (766)
+.+.||-||..++|.-..+-+ .|. .|.| .-.|.+|.+|-....--.-||..|=.+++- ...
T Consensus 8 ~vlvLgGVIA~~gD~ig~kvGkarL-------------rlF~LRPkqTAvlvtvltG~liSA~tLailf~~~~~--lr~- 71 (499)
T COG4372 8 FVLVLGGVIAYAGDTIGKKVGKARL-------------RLFGLRPKQTAVLVTVLTGMLISAATLAILFLLNRN--LRS- 71 (499)
T ss_pred HHHHHHhHHHHHhhHHHhhhhHHHH-------------hHhccCcccceeehhhhhcchhhHHHHHHHHHhhhh--HHh-
Confidence 578899999999983221111 111 1222 346777777765544445677666555431 111
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHh
Q 004235 370 PVVNRDLISSDMQKLRQQLKYLQAELC 396 (766)
Q Consensus 370 p~vn~d~~~~~i~~L~~~i~~l~~el~ 396 (766)
...++..++.++..++.||-
T Consensus 72 -------gVfqlddi~~qlr~~rtel~ 91 (499)
T COG4372 72 -------GVFQLDDIRPQLRALRTELG 91 (499)
T ss_pred -------hhhhHHHHHHHHHHHHHHHH
Confidence 11244555666666666653
No 137
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.13 E-value=1.1e+02 Score=40.85 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=13.7
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
++.-+|++|||||.+|
T Consensus 29 ~~~l~G~NGaGKSTll 44 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTM 44 (1486)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4556799999999998
No 138
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.95 E-value=0.3 Score=55.06 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=30.8
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..||||.-... .+ +...|.. ...|.....+.--.||-||++|+||||-|
T Consensus 82 ~~ytFdnFv~g-~~-N~~A~aa--~~~va~~~g~~~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 82 PKYTFDNFVVG-PS-NRLAYAA--AKAVAENPGGAYNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCCchhheeeC-Cc-hHHHHHH--HHHHHhccCCcCCcEEEECCCCCCHHHHH
Confidence 57999987743 33 3344332 22333333333335889999999999999
No 139
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.86 E-value=30 Score=37.93 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=38.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004235 604 KHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGR 658 (766)
Q Consensus 604 k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~r 658 (766)
....+.++..+...|...+.+|..+..++.+-.....+.+.--.+||..||.+-+
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3344566777888888888888888888877766666666666677777775433
No 140
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.83 E-value=29 Score=35.75 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004235 666 KLEALNQRQKMVLQRKTEEAA 686 (766)
Q Consensus 666 ~L~~~~~~q~~vLkrK~eEa~ 686 (766)
+.++....++++++||..+|.
T Consensus 126 kr~~~~Ka~e~~~kRkQdsa~ 146 (246)
T KOG4657|consen 126 KRQALSKAKENAGKRKQDSAD 146 (246)
T ss_pred HHHHHHHHHHHHHHHHhhhhc
Confidence 445556778888888877743
No 141
>PRK06526 transposase; Provisional
Probab=87.81 E-value=0.29 Score=51.93 Aligned_cols=20 Identities=35% Similarity=0.336 Sum_probs=16.5
Q ss_pred CCcCEEEEeecccCCCCccccC
Q 004235 78 QGYNATVLAYGQTGSGKTYTMG 99 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm~ 99 (766)
.|.| |+.||++|+||||.+.
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~ 116 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAI 116 (254)
T ss_pred cCce--EEEEeCCCCchHHHHH
Confidence 3554 7899999999999983
No 142
>PRK08116 hypothetical protein; Validated
Probab=87.69 E-value=0.3 Score=52.25 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=34.0
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhC--CcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~--G~N~tI~aYGqTGSGKTyTm 98 (766)
..++||.-. .+. .+...|.. +...++.+.. +.|..++-||++||||||.+
T Consensus 80 ~~~tFdnf~-~~~-~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFL-FDK-GSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred Hhcchhccc-CCh-HHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHH
Confidence 367888755 332 24445543 5666676653 34556899999999999988
No 143
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.68 E-value=70 Score=38.28 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004235 725 LQKWLEHELEVSANVHEVRFKYEKQSQV 752 (766)
Q Consensus 725 ~~~wv~~Ele~~~~~~e~~~~~e~~~~~ 752 (766)
...++.+=+||.=.+.--+...++-+.|
T Consensus 486 Rs~Yt~RIlEIv~NI~KQk~eI~KIl~D 513 (594)
T PF05667_consen 486 RSAYTRRILEIVKNIRKQKEEIEKILSD 513 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444455555555555555555544443
No 144
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.67 E-value=0.48 Score=53.15 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=19.7
Q ss_pred HHHHHh-CCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLF-QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l-~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+...+ .+....++-||++|+|||+++
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 333344 345566899999999999987
No 145
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=0.75 Score=51.47 Aligned_cols=27 Identities=33% Similarity=0.668 Sum_probs=19.6
Q ss_pred HHHHHhCCcC-EEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N-~tI~aYGqTGSGKTyTm 98 (766)
++..++.|.- ..++.||.||+|||.|+
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3444454433 34999999999999987
No 146
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.59 E-value=72 Score=38.34 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 004235 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKK 593 (766)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k 593 (766)
..+.|.+|++....|-.+.-+|-..|..- +-+..+..++|.+|+.++..++.+
T Consensus 165 LK~QL~Elq~~Fv~ltne~~elt~~lq~E--------q~~~keL~~kl~~l~~~l~~~~e~ 217 (617)
T PF15070_consen 165 LKEQLAELQDAFVKLTNENMELTSALQSE--------QHVKKELQKKLGELQEKLHNLKEK 217 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556677776666666655544444321 122223455555555555555543
No 147
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=87.42 E-value=0.41 Score=44.29 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=20.7
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+...+.......|+.+|++|+|||+++
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 344444444434556888999999999876
No 148
>PRK08727 hypothetical protein; Validated
Probab=87.40 E-value=0.27 Score=51.42 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=26.7
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcC-EEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N-~tI~aYGqTGSGKTyTm 98 (766)
..|+||.-+.. .+ + .... +.++ ..|+. -.|+-||++||||||.+
T Consensus 14 ~~~~f~~f~~~-~~-n--~~~~-~~~~----~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 14 SDQRFDSYIAA-PD-G--LLAQ-LQAL----AAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CcCChhhccCC-cH-H--HHHH-HHHH----HhccCCCeEEEECCCCCCHHHHH
Confidence 46899987643 22 2 2211 1222 22332 35999999999999988
No 149
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.40 E-value=0.34 Score=50.66 Aligned_cols=46 Identities=13% Similarity=0.340 Sum_probs=29.7
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|+||.-+.. + +...+.. +..++. ......++-||++|+||||.+
T Consensus 17 ~~~~fd~f~~~--~-n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 17 DDETFASFYPG--D-NDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CcCCccccccC--c-cHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 57889877643 3 3445433 333322 222347899999999999998
No 150
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=87.36 E-value=59 Score=37.07 Aligned_cols=47 Identities=26% Similarity=0.430 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 004235 615 QAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNE 661 (766)
Q Consensus 615 ~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~ 661 (766)
..||+.|+.-|-.|=+....-....+..|..++.|.+-|..+-.|++
T Consensus 459 eeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~e 505 (527)
T PF15066_consen 459 EEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHE 505 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544444444444445555555556666666655554443
No 151
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.06 E-value=22 Score=40.25 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=20.7
Q ss_pred EEcCCHHHHHHHHHhcccCcccccCCCCC-CCCCcEEEEEEEEEee
Q 004235 193 VAVNTLQEMAACLEQGSLSRATGSTNMNN-QSSRSHAIFTITLEQM 237 (766)
Q Consensus 193 ~~V~s~~e~~~~l~~g~~~R~~~~t~~N~-~SSRSH~Ifti~v~q~ 237 (766)
+...+..++..++..=+ .+ .+|. .+--.|++|-..|+-.
T Consensus 120 IkFr~q~da~~Fy~efN-Gk-----~Fn~le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 120 IKFRDQADADTFYEEFN-GK-----QFNSLEPEVCHLLYVDRVEVT 159 (493)
T ss_pred EEeccchhHHHHHHHcC-CC-----cCCCCCccceeEEEEEEEEEE
Confidence 55667777777765411 11 1221 1124588887777653
No 152
>PRK07952 DNA replication protein DnaC; Validated
Probab=87.01 E-value=0.46 Score=50.12 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=31.9
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
...+||..... ...+..++.. +...++.+..|++ .++-||++|+||||.+
T Consensus 67 ~~~tFdnf~~~-~~~q~~al~~-a~~~~~~~~~~~~-~~~l~G~~GtGKThLa 116 (244)
T PRK07952 67 QNCSFENYRVE-CEGQMNALSK-ARQYVEEFDGNIA-SFIFSGKPGTGKNHLA 116 (244)
T ss_pred cCCccccccCC-CchHHHHHHH-HHHHHHhhccCCc-eEEEECCCCCCHHHHH
Confidence 45678865432 2234445554 4445555544443 6788999999999988
No 153
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.90 E-value=0.38 Score=49.37 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=30.6
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|+||.... + . +...+.. +..+ +..+....|+-||++||||||..
T Consensus 10 ~~~~~~~~~~-~-~-~~~~~~~-l~~~---~~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYA-G-G-NAELLAA-LRQL---AAGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCc-C-C-cHHHHHH-HHHH---HhcCCCCeEEEECCCCCCHHHHH
Confidence 4588887773 2 2 3344443 2222 23566778999999999999987
No 154
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.86 E-value=0.37 Score=55.46 Aligned_cols=48 Identities=27% Similarity=0.392 Sum_probs=31.0
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.||||.-+.. .+ +...|. .+..++..--..|| .+|-||++|+||||.|
T Consensus 111 ~~tFdnFv~g-~~-n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVIG-SS-NEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccCC-Cc-HHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 5999987743 33 444553 34444432112355 4789999999999988
No 155
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.84 E-value=82 Score=38.16 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 004235 615 QAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKM 676 (766)
Q Consensus 615 ~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~ 676 (766)
..++...-..|--+.++||+......+...++--||.-+. +++.+|+..+..|..
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n-------~qlkelk~~~~~q~l 584 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFN-------NQLKELKEDVNSQQL 584 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHH
Confidence 3455555566666667777776665555544444444333 445566655555543
No 156
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=86.78 E-value=0.39 Score=57.76 Aligned_cols=93 Identities=25% Similarity=0.415 Sum_probs=56.3
Q ss_pred EEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccch--H--HHHHHHHHHHH
Q 004235 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLI--P--QVMNALFNKIE 123 (766)
Q Consensus 48 F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Gii--p--r~~~~LF~~i~ 123 (766)
|....=|.|.+. |..-+ ..+++++-.|-..-+ .+|.||||||+||..-......+-|| | .....|++.+.
T Consensus 2 f~~~~~~~~~~~-Q~~ai----~~l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 2 FKLHSPFQPAGD-QPKAI----AKLVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred ceeccCCCCChH-HHHHH----HHHHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 444445777665 55444 446666666643333 68999999999994321111122222 1 24556777666
Q ss_pred hccccceeeEEeehhhhhcceee
Q 004235 124 TLRHQMEFQLHVSFIEILKEEVR 146 (766)
Q Consensus 124 ~~~~~~~~~v~vS~~EIynE~v~ 146 (766)
..-+...+...|||+..|+-+.|
T Consensus 76 ~f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 76 EFFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HhCCCCeEEEEeeecccCCcccc
Confidence 65445558889999999987643
No 157
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=86.61 E-value=0.48 Score=48.99 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=30.9
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|+||.+++. . ...++. .+..++.. .+.+..|+-||++||||||.+
T Consensus 13 ~~~~~d~f~~~--~-~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAG--E-NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccC--C-cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 56999998832 2 233333 34444442 234557899999999999987
No 158
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.55 E-value=33 Score=36.29 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 004235 573 QDGHTLKLKALEAQILELKKKQ 594 (766)
Q Consensus 573 ~e~~~~kl~~Le~el~~Lk~k~ 594 (766)
+.+|+.+|.+++.+....+..+
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L 28 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEAL 28 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666655555544433
No 159
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.50 E-value=0.48 Score=52.54 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=20.2
Q ss_pred HHHHHhC-CcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~-G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++. +....++-||++|+|||+++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3344443 45668999999999999977
No 160
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.38 E-value=0.45 Score=50.59 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=21.5
Q ss_pred hHhHHHHHhCCc---CEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGY---NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~---N~tI~aYGqTGSGKTyTm 98 (766)
..+.+..++... .+.|+..|.||||||.+|
T Consensus 112 ~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 112 IPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp CHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHhhccccceEEEEECCCccccchHH
Confidence 334444455444 667778899999999998
No 161
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.32 E-value=0.49 Score=49.86 Aligned_cols=43 Identities=35% Similarity=0.476 Sum_probs=32.3
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCccccC--CCCCCCCcccch
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--TGLREGFQTGLI 111 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm~--g~~~~~~~~Gii 111 (766)
+.|++..+.----+.|+..|+|||||+.||. -++.+....|=|
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHI 159 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCce
Confidence 5678888887888889999999999999982 234455555543
No 162
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.25 E-value=58 Score=35.87 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES 596 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e 596 (766)
.-...|+.....|+.+...|...++.+ ..+....+.+...|+.++..|+....+
T Consensus 149 gl~~~L~~~~~~L~~D~~~L~~~~~~l--------~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 149 GLKEGLEENLELLQEDYAKLDKQLEQL--------DELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555555555555555433 344445566777888888888776655
No 163
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=85.90 E-value=49 Score=34.69 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004235 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (766)
Q Consensus 606 k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~ 668 (766)
..+.+.+.|..+.+.|+.--..+--+.-..-.+|-+.....+.++.|++..-.....-|++|+
T Consensus 56 q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLE 118 (333)
T KOG1853|consen 56 QLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444454444443333344444444555555555555555543333333344443
No 164
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.74 E-value=89 Score=37.58 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 004235 528 ALRHHFGKKIMELEEEKRIVQQE---RDRLLAEIEN 560 (766)
Q Consensus 528 ~~k~~ye~kl~eLe~ei~~lq~E---rd~Ll~~l~~ 560 (766)
.+....+.+|.+|+..++.++.+ +.+|++.+.+
T Consensus 115 ~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqs 150 (617)
T PF15070_consen 115 RLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQS 150 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34455578888888888877655 4556665554
No 165
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.72 E-value=36 Score=32.95 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 580 LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (766)
Q Consensus 580 l~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmk 633 (766)
|..++.+|.+++.+..+-.+....-+....+|..|..++...-..-.....+++
T Consensus 51 ld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 51 LDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333334444444555555444443333333333
No 166
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.61 E-value=42 Score=38.17 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 534 GKKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
.+++..|+++.++|+..--++...+..+
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~m 321 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAM 321 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3677888888888877766666555444
No 167
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.55 E-value=1.2e+02 Score=38.70 Aligned_cols=84 Identities=25% Similarity=0.285 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 004235 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQE-------AEQFRQWKASREKEL 650 (766)
Q Consensus 578 ~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee-------~~~~r~~k~~~~kEi 650 (766)
++++.|++++.+.++ +...+-++-++....|.+++.||.+|...+.++-+.+.+. ++..+......++|+
T Consensus 412 ~k~kKleke~ek~~~---~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel 488 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARR---KKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKEL 488 (1293)
T ss_pred HHHHHHHHHHHHHHh---hHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 344444444444443 3455667778888888899999999988888776655444 444455555666666
Q ss_pred HHHHHhhhhhHHHH
Q 004235 651 LKLKKEGRKNEFER 664 (766)
Q Consensus 651 ~qLkk~~rk~~~ei 664 (766)
+.+.++.-+...++
T Consensus 489 ~~~~~~~n~~~~e~ 502 (1293)
T KOG0996|consen 489 MPLLKQVNEARSEL 502 (1293)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555444443
No 168
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.53 E-value=80 Score=38.48 Aligned_cols=62 Identities=24% Similarity=0.287 Sum_probs=33.5
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 495 LWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 495 ~~q~~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
.+.+.|...+.+|..+|.+....+... ..-..+......+|......++.+|..|..+|...
T Consensus 27 ~~E~~~~~~i~~l~~elk~~~~~~~~~-----~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~ 88 (717)
T PF09730_consen 27 SKEAYLQQRILELENELKQLRQELSNV-----QAENERLSQLNQELRKECEDLELERKRLREEIKEY 88 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555554444444333221 11223445666677777777777777777777654
No 169
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=85.51 E-value=0.25 Score=60.17 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004235 676 MVLQRKTEEAAIATKRLKELLEARKSSA 703 (766)
Q Consensus 676 ~vLkrK~eEa~a~~krlk~~l~~~k~~~ 703 (766)
..|++|-++..+...|+|..+++-+.+-
T Consensus 583 ~~L~~k~~e~~~~eer~k~~lekak~vi 610 (713)
T PF05622_consen 583 EALQKKEEEMRAMEERYKKYLEKAKEVI 610 (713)
T ss_dssp ----------------------------
T ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHh
Confidence 3577777777777778887777655543
No 170
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.48 E-value=95 Score=37.62 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.8
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
+++-+|+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5567899999999987
No 171
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.39 E-value=29 Score=33.54 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIE 559 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~ 559 (766)
.....|..++..+..+.+.+-..+.
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~ 76 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVE 76 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4456666777777666666655444
No 172
>PF13245 AAA_19: Part of AAA domain
Probab=85.26 E-value=0.44 Score=40.83 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.0
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
|...+. -+..++..|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 344445 2333445899999999998
No 173
>PRK10436 hypothetical protein; Provisional
Probab=85.24 E-value=0.45 Score=54.81 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=23.1
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++..-++.|+..|+||||||.||
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 455666677889999999999999999
No 174
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=85.19 E-value=12 Score=39.57 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=39.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 570 QKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (766)
Q Consensus 570 ~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmk 633 (766)
.+.++.++.|..+||.|+..++. .+..|+.||..||+-=++|-.|+|
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~-----------------~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQ-----------------TISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999876654 566899999999999999988875
No 175
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.09 E-value=99 Score=38.09 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=32.2
Q ss_pred CCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccc---cccchHHHHHHHHHHHHHHHHHhH
Q 004235 333 GNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN---RDLISSDMQKLRQQLKYLQAELCA 397 (766)
Q Consensus 333 Gns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn---~d~~~~~i~~L~~~i~~l~~el~~ 397 (766)
+++..+-|..-+|.+.-...-.|++-=+-...++..+-... .+.....+..+++++...+.++..
T Consensus 152 ~~s~ii~Is~~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~ 219 (754)
T TIGR01005 152 EKTRIIAIEFRSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAA 219 (754)
T ss_pred CccEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777666556666554333332222221111 122233455566666555555543
No 176
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.05 E-value=0.5 Score=54.90 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=23.3
Q ss_pred HHHHHhCCcCEEEEeecccCCCCccccC
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm~ 99 (766)
.+..++..-++.|+..|+||||||+||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556677777889999999999999993
No 177
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.87 E-value=0.45 Score=56.33 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.4
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++..-++.|+..|+||||||+||
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 456677777899999999999999998
No 178
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=84.45 E-value=0.4 Score=43.83 Aligned_cols=15 Identities=53% Similarity=0.618 Sum_probs=13.7
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
++.+|+||||||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
Confidence 578899999999998
No 179
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.30 E-value=0.64 Score=51.55 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=23.5
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|.+..++.--.+.|+..|+||||||+||
T Consensus 110 ~~~~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 110 LPPVLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CCHHHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 345666666544678999999999999999
No 180
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.19 E-value=27 Score=35.09 Aligned_cols=55 Identities=25% Similarity=0.389 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 575 GHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (766)
Q Consensus 575 ~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkm 632 (766)
.+..++..++..+..+.+...+.. +.-......+..+..++.++...+-.+..++
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQ---KELQDSREEVQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544333322 2333333444444444444444444444333
No 181
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.18 E-value=23 Score=40.07 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 633 KQEAEQFRQWKASREKELLKLKKE 656 (766)
Q Consensus 633 kee~~~~r~~k~~~~kEi~qLkk~ 656 (766)
++..++.......++..|.-|+++
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQ 443 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444443
No 182
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=84.02 E-value=0.42 Score=48.63 Aligned_cols=18 Identities=50% Similarity=0.695 Sum_probs=16.1
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
++.|+-.|+||||||+++
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 367889999999999998
No 183
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=83.77 E-value=0.58 Score=52.41 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=20.4
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++++.++. .++.|+..|+||||||+||
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 34444443 4667888999999999999
No 184
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.44 E-value=67 Score=34.27 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
|..+..++..+..+++.|...+..
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666665555544
No 185
>PRK08181 transposase; Validated
Probab=83.32 E-value=0.95 Score=48.48 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=16.4
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|.| |+-||++|+||||-+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa 123 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLA 123 (269)
T ss_pred cCce--EEEEecCCCcHHHHH
Confidence 4555 789999999999988
No 186
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=83.22 E-value=82 Score=35.11 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 004235 638 QFRQWKASREKELLKLKKEGRKNEFERHKL 667 (766)
Q Consensus 638 ~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L 667 (766)
..++.-+.+++|++.+...-...+.+|..+
T Consensus 207 ~r~~a~q~r~~ela~r~aa~Qq~~q~i~qr 236 (499)
T COG4372 207 TRANAAQARTEELARRAAAAQQTAQAIQQR 236 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555554444444444444433
No 187
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=83.13 E-value=1e+02 Score=36.25 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004235 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKS 607 (766)
Q Consensus 531 ~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~---~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~ 607 (766)
....+++.+|..+|..+....+.....-...... ...........|...|.+-+.++..|+.....-..|...-...
T Consensus 168 ~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a 247 (522)
T PF05701_consen 168 EENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEA 247 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777777777776543322111000 0000112234566667777777777776663333333344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004235 608 DEAAKRLQAEIQSIKAQKVQL 628 (766)
Q Consensus 608 e~~i~~L~~Ei~~mK~~kV~L 628 (766)
...+..|+.|+...+..++.-
T Consensus 248 ~~~l~~Lq~El~~~~~~~l~~ 268 (522)
T PF05701_consen 248 SAELESLQAELEAAKESKLEE 268 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 566777777777666655554
No 188
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=82.92 E-value=0.65 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=19.3
Q ss_pred HhCCcCEEEEeecccCCCCcccc
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++.--++.|+..|+||||||.||
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHH
Confidence 44445789999999999999999
No 189
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=82.60 E-value=0.46 Score=44.09 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=13.2
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
+.+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 357899999999999987
No 190
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.40 E-value=54 Score=32.84 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004235 533 FGKKIMELEEEKRIVQQERDR 553 (766)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~ 553 (766)
+..++..+...+..+.+|..+
T Consensus 128 ~~~~l~~l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEIRE 148 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333
No 191
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.37 E-value=50 Score=34.62 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQ 603 (766)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~ 603 (766)
+|.++..+...+++-+.+|+.+++... .-++.|+++++++..|......|..-|++
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e------------~ee~~L~e~~kE~~~L~~Er~~h~eeLrq 57 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLE------------NEEKCLEEYRKEMEELLQERMAHVEELRQ 57 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888887652 12466777777777777666666655554
No 192
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=82.12 E-value=82 Score=37.20 Aligned_cols=106 Identities=20% Similarity=0.297 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHH
Q 004235 503 ELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKA 582 (766)
Q Consensus 503 EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~ 582 (766)
.+.+|.-.|+.|...+.. ..+.+++.|-. ...||.++-+|-.|.-+|.-.+..+ .|-+.+|++|+..
T Consensus 140 KIrDLE~cie~kr~kLna----tEEmLQqells-rtsLETqKlDLmaevSeLKLkltal--------Ekeq~e~E~K~R~ 206 (861)
T KOG1899|consen 140 KIRDLETCIEEKRNKLNA----TEEMLQQELLS-RTSLETQKLDLMAEVSELKLKLTAL--------EKEQNETEKKLRL 206 (861)
T ss_pred hHHHHHHHHHHHHhhhch----HHHHHHHHHHh-hhhHHHHHhHHHHHHHHhHHHHHHH--------HHHhhhHHHHHHh
Confidence 445555555555432211 11223333332 2556666666555555554444332 1223456667766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004235 583 LEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKA 623 (766)
Q Consensus 583 Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~ 623 (766)
-|..+.++. +.-+..+...+-..+.+++.-..|+..|+.
T Consensus 207 se~l~qevn--~~kv~e~~~erlqye~klkstk~e~a~L~E 245 (861)
T KOG1899|consen 207 SENLMQEVN--QSKVGEVVQERLQYETKLKSTKGEMAPLRE 245 (861)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhhcccccchhhhHHH
Confidence 666666665 222334444444444444444444444443
No 193
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.99 E-value=43 Score=37.45 Aligned_cols=41 Identities=32% Similarity=0.363 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004235 628 LQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (766)
Q Consensus 628 L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~ 668 (766)
-|++-++++++.|..-.--+|||..||++.-|.+..|..|+
T Consensus 142 em~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 142 EMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46777899999999999999999999999999999999998
No 194
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=81.96 E-value=0.54 Score=48.62 Aligned_cols=15 Identities=47% Similarity=0.846 Sum_probs=13.1
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999999
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=81.91 E-value=0.55 Score=42.82 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=15.1
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 45788999999999998
No 196
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=81.77 E-value=0.78 Score=44.38 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=19.4
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++..+..|.| ++..|+||||||+..
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHH
Confidence 3445556766 678899999999987
No 197
>PRK01156 chromosome segregation protein; Provisional
Probab=81.67 E-value=1.5e+02 Score=37.19 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004235 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKA 623 (766)
Q Consensus 578 ~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~ 623 (766)
..+..|+.++.+++....+.......-......+..|..+|..++.
T Consensus 619 ~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~ 664 (895)
T PRK01156 619 KSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDS 664 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666555555555554555555555556666655544
No 198
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.39 E-value=1.1e+02 Score=35.52 Aligned_cols=172 Identities=18% Similarity=0.165 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhh------HHHHH-HHHHHHHHHHHHHHHHHH
Q 004235 526 TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG------HTLKL-KALEAQILELKKKQESQV 598 (766)
Q Consensus 526 ~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~------~~~kl-~~Le~el~~Lk~k~~e~~ 598 (766)
.....++.+......+.+....+.|.|+++.-+.......++...|+.+- .-++. +-+-+++.++++..+...
T Consensus 419 ~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~le 498 (654)
T KOG4809|consen 419 FADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNAQLLE 498 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHHHHHH
Confidence 34456777888888888888888899988876665443344444454321 11111 122233333332222211
Q ss_pred HHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---
Q 004235 599 ELLKQKHK--SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQR--- 673 (766)
Q Consensus 599 ~l~k~k~k--~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~--- 673 (766)
..-+.... ...+--....+|..|.++|-. .-.|+.-..--++..+.++--+++|+-+-|+.--++..+++...+
T Consensus 499 e~rrred~~~d~sqhlq~eel~~alektkQe-l~~tkarl~stqqslaEke~HL~nLr~errk~Lee~lemK~~a~k~~i 577 (654)
T KOG4809|consen 499 EVRRREDSMADNSQHLQIEELMNALEKTKQE-LDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKKPAWKPGI 577 (654)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHhhC-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Confidence 11111100 011111234455555555533 234444445556667777778889998888888887777644322
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 674 ----------QKMVLQRKTEEAAIATKRLKELLEA 698 (766)
Q Consensus 674 ----------q~~vLkrK~eEa~a~~krlk~~l~~ 698 (766)
-..-+.+|+.+-+++.+++|...--
T Consensus 578 ~~d~~~~~~~~~~~~~~k~~~ev~~~~~~k~~~~~ 612 (654)
T KOG4809|consen 578 HADMWRETHKPSNETVTKGSTEVTLAECLKWLTTF 612 (654)
T ss_pred CHHHHHHHhhhhhhHHHhhHHHHHHHHHHccccHH
Confidence 3456777777777788888876543
No 199
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.37 E-value=21 Score=43.58 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=13.8
Q ss_pred eeeecCCCccccccCCCCcc
Q 004235 264 HLVDLAGSERAKRTGSDGLR 283 (766)
Q Consensus 264 ~lVDLAGSEr~~~t~a~g~r 283 (766)
.+.|-...+|.-.+.+.|..
T Consensus 371 L~~Dp~~~~ryy~~H~~GvH 390 (717)
T PF10168_consen 371 LHRDPLNPDRYYCYHNAGVH 390 (717)
T ss_pred EEecCCCCceEEEEecCccE
Confidence 45788888887666666643
No 200
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.19 E-value=26 Score=38.51 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 537 IMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
+..|+.++..+++|++.-..-|..+
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l 35 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKL 35 (314)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777776666555544
No 201
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=81.09 E-value=0.92 Score=48.44 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=20.9
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++..-.+.|+-.|+||||||+||
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 345555555667888899999999999
No 202
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=80.69 E-value=64 Score=32.12 Aligned_cols=105 Identities=24% Similarity=0.328 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhh
Q 004235 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALR---HHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG 575 (766)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k---~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~ 575 (766)
.+...+..+..+|..++..-..+.-.|.+.++ ++|.++|.+-..++..|..-.-..++.| ..
T Consensus 17 ~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L---------------~h 81 (177)
T PF13870_consen 17 TLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQIL---------------TH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH
Confidence 34566777788888887755444333443333 4455555544444444333322222222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L 628 (766)
++.|+..+..++..++..... .+..+..++.++...|..+-++
T Consensus 82 ~keKl~~~~~~~~~l~~~l~~----------~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 82 VKEKLHFLSEELERLKQELKD----------REEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777776666654443 3334445555555555555443
No 203
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=80.60 E-value=14 Score=39.99 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=6.7
Q ss_pred cccCCCChhhhhhh
Q 004235 315 HVPYRDSKLTRLLQ 328 (766)
Q Consensus 315 ~vPyRdSkLTrLLq 328 (766)
.||-=+|.++.+.+
T Consensus 25 ~vP~iesa~~~~~e 38 (297)
T PF02841_consen 25 SVPCIESAWQAVAE 38 (297)
T ss_dssp S--BHHHHHHHHHH
T ss_pred CCCCchHHHHHHHH
Confidence 46766666555543
No 204
>PRK08939 primosomal protein DnaI; Reviewed
Probab=80.50 E-value=0.99 Score=49.26 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=30.5
Q ss_pred EEcceeeCCCCCchhhhhhhhhHhHHHHHhCC-cCEEEEeecccCCCCccccC
Q 004235 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 99 (766)
Q Consensus 48 F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G-~N~tI~aYGqTGSGKTyTm~ 99 (766)
.+||.+-..+. ....++.. +...++....| ..-.|+-||++|+||||-+.
T Consensus 124 atf~~~~~~~~-~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDR-DRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCCh-HHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 45655432221 24455553 35556655543 23468999999999999984
No 205
>PF15294 Leu_zip: Leucine zipper
Probab=79.92 E-value=85 Score=33.75 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004235 673 RQKMVLQRKTEEAAIATKRLK 693 (766)
Q Consensus 673 ~q~~vLkrK~eEa~a~~krlk 693 (766)
.=+.+|..|.+++.+.++||.
T Consensus 257 NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 257 NMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HhHHHHHhccHHHHHHHHHhc
Confidence 334567788888888887774
No 206
>PF12846 AAA_10: AAA-like domain
Probab=79.86 E-value=0.69 Score=49.16 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=15.9
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
|.-++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 556788999999999998
No 207
>PRK06835 DNA replication protein DnaC; Validated
Probab=79.60 E-value=1 Score=49.74 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=22.5
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+...|+.+-.+. ..|+-||+||+||||.+
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLS 200 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence 345677766554 55899999999999987
No 208
>PRK06921 hypothetical protein; Provisional
Probab=79.37 E-value=1.3 Score=47.35 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=20.5
Q ss_pred hHhHHHHHhC---CcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQ---GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~---G~N~tI~aYGqTGSGKTyTm 98 (766)
+...++.+-. +....|+-||++|+||||.+
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHH
Confidence 3345554432 23446788999999999988
No 209
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=79.11 E-value=1.4 Score=50.77 Aligned_cols=49 Identities=22% Similarity=0.313 Sum_probs=31.4
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHH--hCC--cCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGL--FQG--YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~--l~G--~N~tI~aYGqTGSGKTyTm 98 (766)
..||||.-+.. .+ +...|. .+..+.... ..| ||. ++-||++|+||||.+
T Consensus 106 ~~~tFdnFv~g-~~-N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl 158 (445)
T PRK12422 106 PLMTFANFLVT-PE-NDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLM 158 (445)
T ss_pred ccccccceeeC-Cc-HHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHH
Confidence 57999987743 23 444443 344444432 223 554 678999999999988
No 210
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=79.05 E-value=0.98 Score=45.88 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=19.2
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|..++.+.+..++..|+.||||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 345555544444556899999999998
No 211
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=79.04 E-value=1.1e+02 Score=33.73 Aligned_cols=133 Identities=20% Similarity=0.227 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 004235 595 ESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQ 674 (766)
Q Consensus 595 ~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q 674 (766)
.+...++..-++...++..|+.+++.+---|-.+ ..|-.-|+.--.....|+..+=.-+-.+-..|-.|=+.+.-.
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl----~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL 201 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL----VTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYL 201 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Confidence 4577888888999999999999999887777554 467777888777888898888777766666677776656555
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhcccCCCC-CCCCCCCCCHHHHHHHHHHHH
Q 004235 675 KMVLQRKTEE---AAIATKRLKELLEARKSSARENSVNSTG-YTTPTGQSNEKSLQKWLEHEL 733 (766)
Q Consensus 675 ~~vLkrK~eE---a~a~~krlk~~l~~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~wv~~El 733 (766)
+.-|+-=.|| +-+.--+-|-+|++++...--.. +.| .++-.+..+.+.|+..|..+.
T Consensus 202 ~erl~q~qeE~~l~k~~i~KYK~~le~k~~~~~~k~--~~~~~~~~~~v~s~kQv~~ll~~~~ 262 (319)
T PF09789_consen 202 KERLKQLQEEKELLKQTINKYKSALERKRKKGIIKL--GNSASSNLTGVMSAKQVKELLESES 262 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--CCCCCCcccccccHHHHHHHHhccc
Confidence 5444444444 44555677888885332211111 101 111123345677888775544
No 212
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=78.87 E-value=1.1 Score=48.81 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=20.9
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..++..++.+ ...|+..|+||||||++|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455555554 456778899999999998
No 213
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.77 E-value=1.7e+02 Score=35.88 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=34.6
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 492 EHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 492 e~~~~q~~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
++...+-.+-..+.+++-+++......+.+ .......+.++.....++..+.++.+-|..+|...
T Consensus 654 ~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l-----~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 654 ELDDIQQKYKGLIRELDYQIENLKQMEKEL-----QVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333444556666666666665332211111 12233445666666666667777777776666643
No 214
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=78.74 E-value=39 Score=35.51 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=16.3
Q ss_pred CcccCCCChhhhhhhhhcCC
Q 004235 314 VHVPYRDSKLTRLLQDSLGG 333 (766)
Q Consensus 314 ~~vPyRdSkLTrLLqdsLgG 333 (766)
.+||--.++-||||-|.+.|
T Consensus 93 ~~v~a~e~~~~rll~d~i~n 112 (330)
T KOG2991|consen 93 AYVQALEGKYTRLLSDDITN 112 (330)
T ss_pred HHHHHhcCcccchhHHHHHh
Confidence 47888888999999988754
No 215
>PF14992 TMCO5: TMCO5 family
Probab=78.64 E-value=74 Score=34.20 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
.-+.+|+.+...|+++.+-+-..+..
T Consensus 63 ~~l~~le~e~~~LE~~ne~l~~~~~e 88 (280)
T PF14992_consen 63 TDLQELELETAKLEKENEHLSKSVQE 88 (280)
T ss_pred HHHHHHHhhhHHHhhhhHhhhhhhhh
Confidence 44667777777777777665444333
No 216
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=78.57 E-value=71 Score=39.30 Aligned_cols=99 Identities=27% Similarity=0.265 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 004235 635 EAEQFRQWKASREKELLKLKKEGRKNEFERHKL------EALN-QRQKMVLQRKTEEAAIATKRLKELLEARKSSARENS 707 (766)
Q Consensus 635 e~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L------~~~~-~~q~~vLkrK~eEa~a~~krlk~~l~~~k~~~~~~~ 707 (766)
...++.+.|...+||--.||++..|...+-.+- ++.. ++..-+-..-++|.....|||.+.+++|...-.+.+
T Consensus 1076 q~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~ 1155 (1189)
T KOG1265|consen 1076 QTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKH 1155 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776655544442221 1111 122334556678888899999998887765432222
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004235 708 VNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQS 750 (766)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~wv~~Ele~~~~~~e~~~~~e~~~ 750 (766)
.++...|..+ +-+ -..|+...||.+|
T Consensus 1156 ---------------~~~leql~e~-~ka-l~~e~~~~~e~~~ 1181 (1189)
T KOG1265|consen 1156 ---------------LEVLEQLAEE-EKA-LDAEAEQEYEEQM 1181 (1189)
T ss_pred ---------------HHHHHHHHHh-hHH-HHHHHHHHHHHHH
Confidence 2355555555 444 2345555666554
No 217
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.51 E-value=38 Score=34.30 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004235 534 GKKIMELEEEKRIVQQERDRLLAEIENLA 562 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~~ 562 (766)
..++..|..++..++.++.++...++...
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666543
No 218
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.41 E-value=27 Score=41.09 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVE 599 (766)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~ 599 (766)
+..|+.++..+++|..+|..+|+.....- ..+....+++..++..|..|++++.+..+
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~-----~~~~~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREV-----RDKVRKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444432100 11222355667777777777776665443
No 219
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.09 E-value=1.3e+02 Score=34.12 Aligned_cols=186 Identities=20% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCCccccccchhhhhcccc
Q 004235 386 QQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSI 465 (766)
Q Consensus 386 ~~i~~l~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (766)
.+-+..+.|+........+-+++.+..+++.|+.+|..|+.....+++.+..+
T Consensus 278 ~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dkl--------------------------- 330 (502)
T KOG0982|consen 278 SEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKL--------------------------- 330 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Q ss_pred cCCchhhhhhhcCCCChhHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHH
Q 004235 466 DSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKR 545 (766)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~q~~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~ 545 (766)
+.+.+... .+|..+.-+|-..+.+.+.+. .+|...+++..
T Consensus 331 ----------------------aee~qr~s------d~LE~lrlql~~eq~l~~rm~------------d~Lrrfq~eke 370 (502)
T KOG0982|consen 331 ----------------------AEEDQRSS------DLLEALRLQLICEQKLRVRMN------------DILRRFQEEKE 370 (502)
T ss_pred ----------------------hhhhhhHH------HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhhHHH
Q 004235 546 IVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES---------------QVELLKQKHKSDEA 610 (766)
Q Consensus 546 ~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e---------------~~~l~k~k~k~e~~ 610 (766)
+++.-.++|..+|+.+...+-.-.....-.-..|+-+|+.++..|+.+... ....++.--..--.
T Consensus 371 atqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls~q~lkn~ha~~~~ 450 (502)
T KOG0982|consen 371 ATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQFLKNWHATFSL 450 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 004235 611 AKRLQAEIQSIKAQKVQLQNKI-KQEAEQFR 640 (766)
Q Consensus 611 i~~L~~Ei~~mK~~kV~L~kkm-kee~~~~r 640 (766)
...|-+||..| .+-+||..+ ..|...||
T Consensus 451 ~~Slaaeid~~--sqdeLmqafqeqeeiNfR 479 (502)
T KOG0982|consen 451 FFSLAAEIDEM--SQDELMQAFQEQEEINFR 479 (502)
T ss_pred HHHHHHHHHHH--hHHHHHHHHHHHHHhhhH
No 220
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=77.95 E-value=1.4e+02 Score=34.46 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 004235 647 EKELLKLKKEGRKNEFERHK 666 (766)
Q Consensus 647 ~kEi~qLkk~~rk~~~ei~~ 666 (766)
+.++.+|+.+-...+.++..
T Consensus 242 ~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 242 QQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444454444444444443
No 221
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=77.88 E-value=0.89 Score=46.31 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.4
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4678899999999998
No 222
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=77.84 E-value=92 Score=32.33 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQA 616 (766)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~ 616 (766)
...|+..+..++++...+..+++.+. -..+..+.+...+|+.|+.+-.++ +...-..+..+..|..
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN----~~RK~~Q~~~~~~L~~Le~~W~~~----------v~kn~eie~a~~~Le~ 203 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVN----RERKRRQEEAGEELRYLEQRWKEL----------VSKNLEIEVACEELEQ 203 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 45666666666666666666666542 011122334455555555555444 4444567788999999
Q ss_pred HHHHHHHHHHHHHH
Q 004235 617 EIQSIKAQKVQLQN 630 (766)
Q Consensus 617 Ei~~mK~~kV~L~k 630 (766)
||.++|+.+.++-.
T Consensus 204 ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 204 EIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988866543
No 223
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=77.81 E-value=1.5 Score=43.99 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=18.4
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+...-+-.-.-.++-||++|+||||..
T Consensus 35 ~~~l~~~~~~~~~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 35 IAQLAALEFIENGENLILYGPPGTGKTHLA 64 (178)
T ss_dssp HHHHHHH-S-SC--EEEEEESTTSSHHHHH
T ss_pred HHHHhcCCCcccCeEEEEEhhHhHHHHHHH
Confidence 333433333333345889999999999987
No 224
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=77.68 E-value=2.3e+02 Score=36.81 Aligned_cols=91 Identities=25% Similarity=0.315 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQ-------DGHTLKLKALEAQILELKKKQESQVELLKQKHKS 607 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~-------e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~ 607 (766)
.++..|+.+...+.++.+.+...+......++....++- .+++.++..++..+.++. .++..+...+.+.
T Consensus 268 ~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~---~e~~~l~~~k~~~ 344 (1294)
T KOG0962|consen 268 KQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLN---EERSSLIQLKTEL 344 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 344445555555555555554444432222333333332 234455555555555555 5566677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004235 608 DEAAKRLQAEIQSIKAQKVQL 628 (766)
Q Consensus 608 e~~i~~L~~Ei~~mK~~kV~L 628 (766)
+-.+..|+.++...+..+.++
T Consensus 345 ~~~~~~lq~e~~~~~~l~~~~ 365 (1294)
T KOG0962|consen 345 DLEQSELQAEAEFHQELKRQR 365 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777766665
No 225
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=77.34 E-value=1.6 Score=52.34 Aligned_cols=19 Identities=47% Similarity=0.665 Sum_probs=15.9
Q ss_pred cCEEEEeecccCCCCcccc
Q 004235 80 YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (766)
-|-.|+.+|+||||||+-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3556778899999999887
No 226
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=77.32 E-value=1.9e+02 Score=35.73 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 004235 573 QDGHTLKLKALEAQILELKKKQESQVEL-LKQKHKSDEAAKRLQAEI---QSIKAQKVQLQNKIKQEAEQFRQWKAS--- 645 (766)
Q Consensus 573 ~e~~~~kl~~Le~el~~Lk~k~~e~~~l-~k~k~k~e~~i~~L~~Ei---~~mK~~kV~L~kkmkee~~~~r~~k~~--- 645 (766)
-++-+.+....+.++.+|+.+..+.-.- .-+..|.+.-.++|...+ ..++..+-.|-.++-+=......|..+
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~ 491 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTES 491 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3556666677777777777655542111 123334444444444333 334444444444444333333333332
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHH-------HHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 004235 646 REKELLKLKKEGRKNEFERHKLEAL-------NQRQ----KMVLQRKTEEAAIATKRLKELL 696 (766)
Q Consensus 646 ~~kEi~qLkk~~rk~~~ei~~L~~~-------~~~q----~~vLkrK~eEa~a~~krlk~~l 696 (766)
..+-+.+||.+.+...-++.+|+.. +..| .-.|+-|--+++.+..|+-+.-
T Consensus 492 ~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~ 553 (980)
T KOG0980|consen 492 QAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEERE 553 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344555666666666665555433 1111 1246666666666666664333
No 227
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=76.99 E-value=1.3 Score=48.71 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=20.1
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..++..++.+. ..|+..|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 34556566553 55666799999999887
No 228
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.70 E-value=2.1 Score=52.56 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=20.4
Q ss_pred hHHHHHh--CCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLF--QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l--~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+..++ .|-+.+||.||+||+|||.|+
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3334444 345567889999999999998
No 229
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=76.53 E-value=43 Score=37.60 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=9.4
Q ss_pred chHHHHHHHHHHHHHHHH
Q 004235 499 TMDKELNELNKRLEQKES 516 (766)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~ 516 (766)
+.+..+..+|.+|++-+.
T Consensus 10 ~~dqr~~~~~~~laq~~k 27 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEK 27 (459)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 344555555555555443
No 230
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=76.49 E-value=2.4e+02 Score=36.43 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhh-hhhHHHHHHHHHHHHHHHHHHHHH
Q 004235 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKM-QDGHTLKLKALEAQILELKKKQES 596 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl-~e~~~~kl~~Le~el~~Lk~k~~e 596 (766)
.++..+|+..+....++.+++.+++++.+........++ ..+-++++.+-..++.++++...+
T Consensus 64 ~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~ 127 (1109)
T PRK10929 64 LERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQ 127 (1109)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666666554322211111111 134566666666666666654443
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=76.40 E-value=1.8 Score=45.87 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=24.7
Q ss_pred hhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 61 SSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 61 q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+|.. +..++..+-.|.| ++-||++|+||||-.
T Consensus 88 ~~~~l~~-~~~~~~~~~~~~n--l~l~G~~G~GKThLa 122 (254)
T COG1484 88 DKKALED-LASLVEFFERGEN--LVLLGPPGVGKTHLA 122 (254)
T ss_pred hHHHHHH-HHHHHHHhccCCc--EEEECCCCCcHHHHH
Confidence 4455544 5666666664544 567999999999987
No 232
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=76.33 E-value=47 Score=28.84 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHH
Q 004235 572 MQDGHTLKLKALEAQILELKKKQESQVEL-LKQKHKSDEAAKRLQAEIQS 620 (766)
Q Consensus 572 l~e~~~~kl~~Le~el~~Lk~k~~e~~~l-~k~k~k~e~~i~~L~~Ei~~ 620 (766)
-+++|+.+++.=-.++..++.+.-+...- .++|++.|+.|.+|+.++..
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777666666666666665553332 35667777777777776654
No 233
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.24 E-value=48 Score=39.04 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=16.7
Q ss_pred cchHHHHHHHHHHHHhccccceeeEEeehhh
Q 004235 109 GLIPQVMNALFNKIETLRHQMEFQLHVSFIE 139 (766)
Q Consensus 109 Giipr~~~~LF~~i~~~~~~~~~~v~vS~~E 139 (766)
|.|.++...|=+.+....-+++..|+=+|-.
T Consensus 164 ~av~~~~reIee~L~~agldyDl~vr~~~gG 194 (652)
T COG2433 164 GAVKRVVREIEEKLDEAGLDYDLEVRESYGG 194 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEEeeccCc
Confidence 6777777777776665333333333333433
No 234
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=75.99 E-value=1.2 Score=45.19 Aligned_cols=30 Identities=37% Similarity=0.518 Sum_probs=22.0
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..|...+-.|.+..++-||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344555555677889999999999999987
No 235
>PF13479 AAA_24: AAA domain
Probab=75.87 E-value=1.3 Score=45.58 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=16.3
Q ss_pred CEEEEeecccCCCCccccC
Q 004235 81 NATVLAYGQTGSGKTYTMG 99 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm~ 99 (766)
+..|+.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999999873
No 236
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=75.28 E-value=1.2 Score=41.14 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.5
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999976
No 237
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=75.03 E-value=1.6 Score=43.71 Aligned_cols=29 Identities=31% Similarity=0.325 Sum_probs=20.2
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+++..++.. ...|+-.|+||||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 34455555553 345677799999999987
No 238
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=74.97 E-value=1.3 Score=40.62 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999876
No 239
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=74.82 E-value=2.2 Score=46.08 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=22.6
Q ss_pred hhhhhhHhHHHHHhCC-cCEEEEeecccCCCCcccc
Q 004235 64 MFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 64 vy~~~v~plV~~~l~G-~N~tI~aYGqTGSGKTyTm 98 (766)
++...|-.++.+.+.| .---.+-|||.|+|||.|.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3333344444444444 4445788999999999997
No 240
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=74.66 E-value=1e+02 Score=31.37 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 645 SREKELLKLKKEGRKNEFERHKLEA-------LNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (766)
Q Consensus 645 ~~~kEi~qLkk~~rk~~~ei~~L~~-------~~~~q~~vLkrK~eEa~a~~krlk~~l~~ 698 (766)
...+++..+..+.......|..|+. .+.+|-++.++|+.++....+.|.+-+..
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~ 182 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQR 182 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555443 45567778888888888777777765544
No 241
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=74.25 E-value=1.6 Score=47.90 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=19.0
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.++..++.+- ..|+-.|.||||||++|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4444445432 34778899999999998
No 242
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.00 E-value=80 Score=33.09 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004235 601 LKQKHKSDEAAKRLQAEIQSIKAQK---VQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (766)
Q Consensus 601 ~k~k~k~e~~i~~L~~Ei~~mK~~k---V~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~ 668 (766)
...-+..+.-|..+..|+..|-.-| |.-+++|.++-+. .+..|.+++.+-.+....+.++.
T Consensus 24 ~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~-------lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 24 VESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINT-------LENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555554333 4444444444433 44455555555555555444443
No 243
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=73.71 E-value=1.9 Score=47.69 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=18.8
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.++..++.+. ..|+..|+||||||++|
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 4444444432 34677899999999998
No 244
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=73.68 E-value=2.3 Score=46.45 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=16.9
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|....++-||++|+|||++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 454345888999999999987
No 245
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=73.16 E-value=1e+02 Score=30.70 Aligned_cols=78 Identities=28% Similarity=0.389 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQA 616 (766)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~ 616 (766)
+..|..+...|+.|.+.|.+.|.. ...+++.+-+--++.-..++.+....+. .++.....+-+..|..|+.
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~~-------ei~~l~a~~klD~n~eK~~~r~e~~~~~--~ki~e~~~ki~~ei~~lr~ 145 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELRE-------EINKLRAEVKLDLNLEKGRIREEQAKQE--LKIQELNNKIDTEIANLRT 145 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555432 1223332222222222223333322222 2233344455666777888
Q ss_pred HHHHHHH
Q 004235 617 EIQSIKA 623 (766)
Q Consensus 617 Ei~~mK~ 623 (766)
+|..+|.
T Consensus 146 ~iE~~K~ 152 (177)
T PF07798_consen 146 EIESLKW 152 (177)
T ss_pred HHHHHHH
Confidence 8776443
No 246
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.04 E-value=52 Score=33.90 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLKALEAQILELKKKQES 596 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e 596 (766)
-+.+|.+|+.|+++|+.+..+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999876665
No 247
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=73.01 E-value=1.9 Score=43.80 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=15.9
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
|..++..-. ..+..|+.|||||+|+
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHH
Confidence 444443322 4566899999999998
No 248
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=72.89 E-value=1.1 Score=47.15 Aligned_cols=46 Identities=26% Similarity=0.502 Sum_probs=29.3
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCE-EEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNA-TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~-tI~aYGqTGSGKTyTm 98 (766)
...+|...+-+. +...+.+. ...++.|..+ -|+-||..|+|||.++
T Consensus 23 ~~~l~~L~Gie~-Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 23 PIRLDDLIGIER-QKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred CCCHHHhcCHHH-HHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHH
Confidence 456666665542 23333333 2566777655 3677999999999877
No 249
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.72 E-value=1.1e+02 Score=30.93 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 533 FGKKIMELEEEKRIVQQERDRLLAEIE 559 (766)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll~~l~ 559 (766)
|..=+.||=.++.--=.||=.||..+.
T Consensus 64 y~~~F~ELIRQVTi~C~ERGlLL~rvr 90 (189)
T PF10211_consen 64 YSQCFDELIRQVTIDCPERGLLLLRVR 90 (189)
T ss_pred HHHHHHHHHHHHHhCcHHHhHHHHHHH
Confidence 555555665666655566655555544
No 250
>PRK09183 transposase/IS protein; Provisional
Probab=72.72 E-value=1.9 Score=45.85 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.6
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|.| |+-||++|+||||.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa 119 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLA 119 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHH
Confidence 4555 567999999999988
No 251
>PF13514 AAA_27: AAA domain
Probab=72.52 E-value=3e+02 Score=35.70 Aligned_cols=56 Identities=27% Similarity=0.275 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004235 381 MQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVV 438 (766)
Q Consensus 381 i~~L~~~i~~l~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 438 (766)
|+.+..++..++.++... .....+.+.+...+..++.+...+..++..++.+...+
T Consensus 152 in~~l~~l~e~~~~l~~~--~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l 207 (1111)
T PF13514_consen 152 INQALKELKELERELREA--EVRAAEYQELQQALEEAEEELEELRAELKELRAELRRL 207 (1111)
T ss_pred HHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555433 22345666677777777777777777777666554443
No 252
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.42 E-value=1.2 Score=54.47 Aligned_cols=76 Identities=26% Similarity=0.394 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH------HHHHHHH
Q 004235 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQR------QKMVLQR 680 (766)
Q Consensus 607 ~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~------q~~vLkr 680 (766)
.+..++.|..++.......+ +.+.|+++..+.+. |.++.++...|+..|...+.- |..-|++
T Consensus 228 ~e~~i~~Le~el~~~~~~~~-i~k~l~~ql~~i~~-----------LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~ 295 (722)
T PF05557_consen 228 AEQKIKELEAELKDQESDAE-INKELKEQLAHIRE-----------LEKENRRLREELKHLRQSQENVELLEEEKRSLQR 295 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHhhHHH-HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46666777777766666553 55666655554444 555555555555555543332 2233555
Q ss_pred HHHHHHHHHHHHHH
Q 004235 681 KTEEAAIATKRLKE 694 (766)
Q Consensus 681 K~eEa~a~~krlk~ 694 (766)
|.+.+..+...|.+
T Consensus 296 kl~~~E~~~~el~~ 309 (722)
T PF05557_consen 296 KLERLEELEEELAE 309 (722)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444444443
No 253
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.33 E-value=3.3e+02 Score=36.15 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=12.1
Q ss_pred EeecccCCCCcccc
Q 004235 85 LAYGQTGSGKTYTM 98 (766)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (766)
+-.|++|||||.+|
T Consensus 28 ~~~G~NGsGKS~~l 41 (1353)
T TIGR02680 28 LLRGNNGAGKSKVL 41 (1353)
T ss_pred EEECCCCCcHHHHH
Confidence 44599999999988
No 254
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=72.18 E-value=2.2 Score=46.89 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=21.0
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..++-.+..+. +.|+..|.||||||+++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 34444555555 77888999999999997
No 255
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=72.17 E-value=2.3 Score=46.19 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.6
Q ss_pred CCc-CEEEEeecccCCCCcccc
Q 004235 78 QGY-NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~-N~tI~aYGqTGSGKTyTm 98 (766)
.|- ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 453 456777999999999987
No 256
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=72.16 E-value=92 Score=31.66 Aligned_cols=59 Identities=25% Similarity=0.324 Sum_probs=40.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 004235 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQ 672 (766)
Q Consensus 603 ~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~ 672 (766)
...+.+..+..|...|..|+.+...+-.+ +....+||.+|+.....-..++..++..++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~-----------ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEK-----------KEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888887777766544333 333348999998888888777777775543
No 257
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=72.07 E-value=1.2 Score=55.31 Aligned_cols=123 Identities=25% Similarity=0.389 Sum_probs=0.0
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhccCCccc
Q 004235 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRI-------VQQERDRLLAEIENLAANSDGH 568 (766)
Q Consensus 496 ~q~~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~-------lq~Erd~Ll~~l~~~~~~~~~~ 568 (766)
++..|..--.++++.|..|++++... +..|...|..|+.++.. +-..+.+|-..|..+...-+ .
T Consensus 494 l~~el~~~r~e~er~l~eKeeE~E~~--------Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld-~ 564 (859)
T PF01576_consen 494 LQVELQQLRQEIERELQEKEEEFEET--------RRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLD-H 564 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH--------HHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34445555566666777776665432 22333444444443322 11222222222222211111 2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004235 569 TQKMQDGHTLKLKALEAQILELKKKQESQV----ELLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (766)
Q Consensus 569 ~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~----~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~ 627 (766)
..+...+..+.++.++.+|.+|+....+-. .+...-...+.++..|.+|+..+....-.
T Consensus 565 ~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~ 627 (859)
T PF01576_consen 565 ANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQ 627 (859)
T ss_dssp ---------------------------------------------------------------
T ss_pred HhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344455555555555555554444322 22223344566666666666666654443
No 258
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=71.90 E-value=4.5 Score=49.55 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=20.9
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..+.+|.|+.|.| |||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 456678999998887 9999999874
No 259
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=71.86 E-value=1.2 Score=55.24 Aligned_cols=28 Identities=39% Similarity=0.359 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 571 KMQDGHTLKLKALEAQILELKKKQESQV 598 (766)
Q Consensus 571 kl~e~~~~kl~~Le~el~~Lk~k~~e~~ 598 (766)
+-+-..+++.+.||.+|.+|+.+..+..
T Consensus 173 k~k~~~Ek~~K~lE~qL~El~~klee~e 200 (859)
T PF01576_consen 173 KAKQEAEKKRKQLEAQLNELQAKLEESE 200 (859)
T ss_dssp ----------------------------
T ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 3334456666677777777766655533
No 260
>PRK06547 hypothetical protein; Provisional
Probab=71.78 E-value=3 Score=41.56 Aligned_cols=30 Identities=43% Similarity=0.446 Sum_probs=21.4
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
|..++..+..+.---|+.+|.+|||||+.-
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344555655555566777799999999875
No 261
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=71.07 E-value=1.3 Score=43.43 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=14.7
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++....|-..+|+.+|.+|+|||+.+
T Consensus 16 l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 16 LDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp TGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 33334566778999999999999986
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=71.05 E-value=3.6 Score=44.31 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=14.1
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|+||+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999998
No 263
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.05 E-value=3.2 Score=46.79 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=16.3
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+.+|+||+|||+|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999998
No 264
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.02 E-value=1.5e+02 Score=31.46 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Q 004235 646 REKELLKLKKEGRKNEFERHKLE 668 (766)
Q Consensus 646 ~~kEi~qLkk~~rk~~~ei~~L~ 668 (766)
.+.+|.+|..+..++..+...|+
T Consensus 87 ~~~~i~~l~ee~~~ke~Ea~~lq 109 (246)
T PF00769_consen 87 AEAEIARLEEESERKEEEAEELQ 109 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554
No 265
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.76 E-value=57 Score=32.19 Aligned_cols=52 Identities=31% Similarity=0.402 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQ 594 (766)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~ 594 (766)
+.+|++++..+..+...|..+|.++.+... -++....+.+|+.++..|..++
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t------~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPT------NEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555432111 1223444555555555554433
No 266
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=70.71 E-value=1.3e+02 Score=30.63 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 530 RHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 530 k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
.++...+|..|+++...+..|+|.|......+
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 34555666666666666666666666555554
No 267
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=70.65 E-value=1.7 Score=46.46 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.6
Q ss_pred cCEEEEeecccCCCCcccc
Q 004235 80 YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (766)
.++.++..|..|||||+||
T Consensus 12 ~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHH
T ss_pred CCCCEEEEeCCCCCchHHH
Confidence 6778888899999999999
No 268
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=70.50 E-value=2.2 Score=46.70 Aligned_cols=27 Identities=44% Similarity=0.722 Sum_probs=21.3
Q ss_pred hHHHHHhCCcC---EEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N---~tI~aYGqTGSGKTyTm 98 (766)
|++...+.|.- -|||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 66777777753 46776 99999999988
No 269
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=70.48 E-value=1.1e+02 Score=29.67 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQ 603 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~ 603 (766)
.-+..|+.++..+-.++..|-.+|.++.. =++.-.+.|+.+..+|.+|..-+.+..+++..
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~s--------Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRS--------EKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45566666777766666666666665421 12334455555666666665555555555443
No 270
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=70.44 E-value=30 Score=39.07 Aligned_cols=79 Identities=28% Similarity=0.349 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004235 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN-SDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHK 606 (766)
Q Consensus 528 ~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~-~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k 606 (766)
....++..||..+.++|+..+..||+-..+-=.+..+ +..+..+++..|+||-+.--..|+.|++|+....+.++.-+.
T Consensus 4 ~~~~~l~~Ki~~~~eqi~~e~~~rd~nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~l~ele~ 83 (395)
T PF10267_consen 4 AAIDHLQQKILKLKEQIKVEQTARDENVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQYHKRLKELEQ 83 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888999999999999999999888775444333 344566899999999999999999999999986666664443
No 271
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.34 E-value=76 Score=39.38 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=19.6
Q ss_pred HHHHHHH-HhHHHHHHHHHHHHHHHHhhhccccc
Q 004235 730 EHELEVS-ANVHEVRFKYEKQSQVYVSILYFPCT 762 (766)
Q Consensus 730 ~~Ele~~-~~~~e~~~~~e~~~~~r~~~~~~~~~ 762 (766)
..||+++ +++.||...|++-+. .|.++.++|.
T Consensus 704 ~~~lDL~G~~~eeA~~~l~~fl~-~a~~~g~~~v 736 (782)
T PRK00409 704 SLELDLRGMRYEEALERLDKYLD-DALLAGYGEV 736 (782)
T ss_pred CceEECCCCCHHHHHHHHHHHHH-HHHHcCCCEE
Confidence 3455543 467788888887754 4555555554
No 272
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=70.18 E-value=3.4 Score=46.10 Aligned_cols=51 Identities=16% Similarity=0.325 Sum_probs=36.1
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhC----CcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ----GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~----G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.|+++.+.-.. -..|.+.++-.++.+++. -.---|+-||+.|+|||+..
T Consensus 111 ~~~f~~~~g~~~~-~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 111 TRSFDNLVGGYYI-APAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hcchhhhcCcccc-CHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 4677777654333 456777777788888774 33346788999999999863
No 273
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=70.17 E-value=2.8 Score=43.06 Aligned_cols=19 Identities=37% Similarity=0.636 Sum_probs=13.9
Q ss_pred cCEEEEeecccCCCCcccc
Q 004235 80 YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (766)
-+-.|++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5557899999999999876
No 274
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=70.13 E-value=2.4e+02 Score=33.59 Aligned_cols=24 Identities=29% Similarity=0.298 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 004235 413 RIAWLEATNEDLCQELHEYRSRRA 436 (766)
Q Consensus 413 ~~~~l~~~~~~l~~~l~~~~~~~~ 436 (766)
++.....++++|..++.+....+.
T Consensus 115 k~~~~~~e~~~lk~~lee~~~el~ 138 (629)
T KOG0963|consen 115 KQQKASEENEELKEELEEVNNELA 138 (629)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHh
Confidence 333445566666666666555433
No 275
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=70.00 E-value=1.8 Score=48.05 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=19.3
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..++..+..+ ...|+..|+||||||++|
T Consensus 152 ~~~l~~~v~~-~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 152 EAFLHACVVG-RLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHHHc-CCeEEEECCCCccHHHHH
Confidence 3444444432 344677899999999998
No 276
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=69.95 E-value=2.8 Score=40.73 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=17.2
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+..+. ..++..|+||||||.++
T Consensus 17 ~~~~~~~~-~~~~i~~~~GsGKT~~~ 41 (201)
T smart00487 17 IEALLSGL-RDVILAAPTGSGKTLAA 41 (201)
T ss_pred HHHHHcCC-CcEEEECCCCCchhHHH
Confidence 34444442 34466799999999987
No 277
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=69.42 E-value=2e+02 Score=32.30 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 579 KLKALEAQILELKKKQESQVELLK 602 (766)
Q Consensus 579 kl~~Le~el~~Lk~k~~e~~~l~k 602 (766)
.+..++.++..+++......+|.+
T Consensus 166 ~l~~~~~~l~~~~~~~~~~~~L~~ 189 (423)
T TIGR01843 166 QLQALRQQLEVISEELEARRKLKE 189 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333434433
No 278
>PRK01156 chromosome segregation protein; Provisional
Probab=69.38 E-value=3.1e+02 Score=34.55 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.1
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4467899999999875
No 279
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.20 E-value=55 Score=33.14 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRL 554 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~L 554 (766)
+++..++.++..++.+.+..
T Consensus 76 ~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 76 KEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 280
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=69.16 E-value=1.4 Score=49.70 Aligned_cols=51 Identities=29% Similarity=0.442 Sum_probs=28.7
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhC--C--cCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~--G--~N~tI~aYGqTGSGKTyTm 98 (766)
.++||.|.+-+. +-..+.+.+..|+.. ..|. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~-~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEE-QIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHH-HHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 456666655432 233444443344433 2232 2 2346889999999999875
No 281
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=69.06 E-value=2.3 Score=42.37 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=15.0
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56888999999999976
No 282
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=68.91 E-value=1.8 Score=43.91 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=12.6
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
-++.+|.||||||+++
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 4788999999999998
No 283
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=68.85 E-value=95 Score=29.13 Aligned_cols=39 Identities=36% Similarity=0.388 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004235 573 QDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSI 621 (766)
Q Consensus 573 ~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~m 621 (766)
.++-+.|+..|+.+|..|. +..++.++++..|+++|+.+
T Consensus 72 ~~eL~er~E~Le~ri~tLe----------kQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 72 VDELEERKETLELRIKTLE----------KQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444 34445666777777777765
No 284
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=68.69 E-value=2.1 Score=45.17 Aligned_cols=17 Identities=47% Similarity=0.753 Sum_probs=14.7
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
-+|+-||++|+|||++-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 46899999999999874
No 285
>PHA00729 NTP-binding motif containing protein
Probab=68.62 E-value=3.7 Score=42.76 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=21.6
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++..+..|--..|+.+|.+|+||||..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 344556655433357999999999999976
No 286
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=68.61 E-value=4.8 Score=38.11 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=24.9
Q ss_pred hHhHHHHHhCCc---CEEEEee-cccCCCCccccCCCCCCCCcccchHHHHHHHHHH
Q 004235 69 VAPLVDGLFQGY---NATVLAY-GQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNK 121 (766)
Q Consensus 69 v~plV~~~l~G~---N~tI~aY-GqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~ 121 (766)
+-..|.+.+... -..|+++ |+||+||||+- ..+.+.||..
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~-------------~liA~~ly~~ 80 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS-------------RLIAEHLYKS 80 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH-------------HHHHHHHHhc
Confidence 334444444432 2356555 99999999975 4466777754
No 287
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=68.54 E-value=3 Score=44.01 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.4
Q ss_pred hCCcCEEEEeecccCCCCcccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+....+.++-+|++|||||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 3434557888999999999887
No 288
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=68.52 E-value=2.4e+02 Score=32.89 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=23.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Q 004235 603 QKHKSDEAAKRLQAEIQSIKAQKV---------QLQNKIKQEAEQFRQ 641 (766)
Q Consensus 603 ~k~k~e~~i~~L~~Ei~~mK~~kV---------~L~kkmkee~~~~r~ 641 (766)
.+++-..+-+.|-++|=+-|.++. .|++=+|+..+.|++
T Consensus 107 ~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~ 154 (475)
T PRK10361 107 SEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRR 154 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444555555666666665555553 356667777777766
No 289
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=68.50 E-value=7.4 Score=43.38 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=39.0
Q ss_pred eeEE-cc-eeeCCCCCchhhhhhhhhHhHHHHHhCC---cCEEEEeecccCCCCcccc------CCC-------------
Q 004235 46 HSFT-FD-HVYGNGGSPSSAMFGECVAPLVDGLFQG---YNATVLAYGQTGSGKTYTM------GTG------------- 101 (766)
Q Consensus 46 ~~F~-FD-~Vf~~~~s~q~~vy~~~v~plV~~~l~G---~N~tI~aYGqTGSGKTyTm------~g~------------- 101 (766)
+.|. |+ .||+.+ +.-+..|.-+ .....| -+-.|+-.|++|||||... .+.
T Consensus 44 ~~y~~F~~~~~G~~-----~~i~~lv~~l-~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~ 117 (361)
T smart00763 44 KRYRFFDHDFFGME-----EAIERFVNYF-KSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFK 117 (361)
T ss_pred eeccccchhccCcH-----HHHHHHHHHH-HHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEE
Confidence 3444 34 577643 3333444333 333333 4566788899999999764 111
Q ss_pred ------CCCCCcccchHHHHHHHH
Q 004235 102 ------LREGFQTGLIPQVMNALF 119 (766)
Q Consensus 102 ------~~~~~~~Giipr~~~~LF 119 (766)
+-...-.|++|...+..|
T Consensus 118 ~~~~~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 118 WNGEESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred ecCCCCCCccCCcccCCHHHHHHH
Confidence 111233489999988888
No 290
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=68.44 E-value=3.3 Score=41.58 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=18.6
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.++.++.|.| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455556888 477789999999874
No 291
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=68.39 E-value=2.4 Score=50.88 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=31.4
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.-+||.+++.+ .. +..++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGqs-----~~----~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQE-----RA----IKALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeCc-----HH----HHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 46788888542 22 223456666788888999999999999876
No 292
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=68.26 E-value=2.3e+02 Score=32.66 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004235 502 KELNELNKRLEQKESEM 518 (766)
Q Consensus 502 ~EL~eLnk~Le~KE~e~ 518 (766)
.++..+..+++..+++.
T Consensus 104 ~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 104 QQLDNLKDQKKSLDTLK 120 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 293
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=68.08 E-value=2.3 Score=40.03 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.8
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+.+|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999975
No 294
>PRK13764 ATPase; Provisional
Probab=68.03 E-value=2.6 Score=50.14 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=16.8
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
.....|+..|+||||||+++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH
Confidence 34455899999999999998
No 295
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=67.95 E-value=99 Score=28.35 Aligned_cols=91 Identities=21% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004235 530 RHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDE 609 (766)
Q Consensus 530 k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~ 609 (766)
+...+.++.-|+..+..+...+++|..+-..+.+.-. ...--...+.+++.+|+.+|.++.+
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~-~L~~q~~s~~qr~~eLqaki~ea~~----------------- 72 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQ-SLQAQNASRNQRIAELQAKIDEARR----------------- 72 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK 654 (766)
Q Consensus 610 ~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLk 654 (766)
.+..+|.+|.+| +.|..|....|-+..|+
T Consensus 73 -------~le~eK~ak~~l---------~~r~~k~~~dka~lel~ 101 (107)
T PF09304_consen 73 -------NLEDEKQAKLEL---------ESRLLKAQKDKAILELK 101 (107)
T ss_dssp -------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHH---------HHHHHHHHhhhhHHHHH
No 296
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.90 E-value=17 Score=30.60 Aligned_cols=48 Identities=31% Similarity=0.480 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 004235 585 AQILELKKKQESQVELLKQKHKSDEAAKRL--------QAEIQSIKAQKVQLQNKI 632 (766)
Q Consensus 585 ~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L--------~~Ei~~mK~~kV~L~kkm 632 (766)
..|..|+.+..--.+|...-.+-+..|+.. ..||+.||+||++|--.|
T Consensus 7 ~~is~Lk~~dahF~rLfd~hn~LDd~I~~~E~n~~~~s~~ev~~LKKqkL~LKDEi 62 (72)
T COG2841 7 DLISKLKANDAHFARLFDKHNELDDRIKRAEGNRQPGSDAEVSNLKKQKLQLKDEI 62 (72)
T ss_pred HHHHHHhccchHHHHHHHHHhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHH
Confidence 455566655555666666666666666666 459999999999875444
No 297
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=67.77 E-value=1.4e+02 Score=33.51 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=37.3
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLK-ALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ 634 (766)
Q Consensus 576 ~~~kl~-~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmke 634 (766)
|++-|+ +|+..+.+.+..+.+.+.+...-......+..+..++..+...--+.-.+|.+
T Consensus 260 REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 260 REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455553 67777777777777777777666666666777776666665554444444444
No 298
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=67.71 E-value=1.5e+02 Score=30.34 Aligned_cols=86 Identities=26% Similarity=0.292 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHH
Q 004235 538 MELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK----KKQESQVELLKQKHKSDEAAKR 613 (766)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk----~k~~e~~~l~k~k~k~e~~i~~ 613 (766)
..|+.....++.|||+|....... ...++..-..|---||..+..|. ++..+...++..-.=.-..+..
T Consensus 110 evL~qr~~kle~ErdeL~~kf~~~-------i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~ 182 (201)
T PF13851_consen 110 EVLEQRFEKLEQERDELYRKFESA-------IQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQ 182 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 356667777788888887766542 12222222222233333333333 2223333333333333334455
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004235 614 LQAEIQSIKAQKVQLQN 630 (766)
Q Consensus 614 L~~Ei~~mK~~kV~L~k 630 (766)
....|..+=..|-..|+
T Consensus 183 v~~~l~~~l~~KN~~I~ 199 (201)
T PF13851_consen 183 VSKKLEDVLDSKNQTIK 199 (201)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555555555555443
No 299
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.71 E-value=70 Score=32.93 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 004235 575 GHTLKLKALEAQILELKKK 593 (766)
Q Consensus 575 ~~~~kl~~Le~el~~Lk~k 593 (766)
+-++.+.+|+.++.++...
T Consensus 97 ~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3577888888888888754
No 300
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.52 E-value=15 Score=42.23 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 004235 579 KLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (766)
Q Consensus 579 kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~ 624 (766)
|+.+||++|..|+ .+...+.+..+..+.+|+.|..|+..|+.|
T Consensus 77 kasELEKqLaaLr---qElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 77 TAAQMQKQYEEIR---RELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHH---HHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4444444444442 112222233334455555555555555444
No 301
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=67.14 E-value=52 Score=33.17 Aligned_cols=37 Identities=24% Similarity=0.445 Sum_probs=28.0
Q ss_pred hhccCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 520 LFGDIDTEALRH---HFGKKIMELEEEKRIVQQERDRLLA 556 (766)
Q Consensus 520 ~~~~~~~~~~k~---~ye~kl~eLe~ei~~lq~Erd~Ll~ 556 (766)
.|+.+...+|++ .|.+||.+|+.....|-+|..+|..
T Consensus 97 rFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 97 RFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455566666765 4999999999999988888766654
No 302
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=67.09 E-value=94 Score=31.50 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004235 610 AAKRLQAEIQSIKAQKVQLQNK 631 (766)
Q Consensus 610 ~i~~L~~Ei~~mK~~kV~L~kk 631 (766)
..+....||..+|++-.+|-.+
T Consensus 164 ~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 164 EEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665444333
No 303
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=66.69 E-value=1.2e+02 Score=28.62 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=34.6
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 370 PVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSR 434 (766)
Q Consensus 370 p~vn~d~~~~~i~~L~~~i~~l~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 434 (766)
+.++..|....+.+|..+|..+..|+ ..++.++..|+.+-+.+..|+..+...
T Consensus 7 s~~~~~~~~~~ve~L~s~lr~~E~E~------------~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 7 STSSGGPSVQLVERLQSQLRRLEGEL------------ASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777888888888777665 345666777777666666666654443
No 304
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=66.53 E-value=2 Score=39.08 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHH
Q 004235 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKI 122 (766)
Q Consensus 84 I~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i 122 (766)
|+-||++|.|||+.+ -.++.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~-------------~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA-------------KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH-------------HHHHHHHHHHh
Confidence 578999999999988 34566666655
No 305
>PRK12704 phosphodiesterase; Provisional
Probab=66.46 E-value=2.7e+02 Score=32.85 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHH
Q 004235 508 NKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQI 587 (766)
Q Consensus 508 nk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el 587 (766)
.+.++..+...+.+...-....+..-.+...+.+.++...+.|.++-+.+.+. ...+..+...+|...|+.+.
T Consensus 30 ~~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~-------~L~qrE~rL~~Ree~Le~r~ 102 (520)
T PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRN-------ELQKLEKRLLQKEENLDRKL 102 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHHHHHHHHHHHHHHHhhhhhH
Q 004235 588 LELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI----KQEAEQ--FRQWKASREKELLKLKKEGRKNE 661 (766)
Q Consensus 588 ~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkm----kee~~~--~r~~k~~~~kEi~qLkk~~rk~~ 661 (766)
..|.++..+..+..+.-.+.++.+..+..++..++...+.-+-++ .+|+.. +.+++....+|.+.+=++-....
T Consensus 103 e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~ 182 (520)
T PRK12704 103 ELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEA 182 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 004235 662 FERHKLEALN 671 (766)
Q Consensus 662 ~ei~~L~~~~ 671 (766)
.+-..-++..
T Consensus 183 ~~~a~~~a~~ 192 (520)
T PRK12704 183 KEEADKKAKE 192 (520)
T ss_pred HHHHHHHHHH
No 306
>PTZ00424 helicase 45; Provisional
Probab=66.41 E-value=3.2 Score=46.53 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=20.1
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+..++.|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 345667889985 46789999999875
No 307
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=66.36 E-value=2.3 Score=40.12 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=13.6
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999976
No 308
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=65.96 E-value=4.8 Score=46.63 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=33.5
Q ss_pred EEEeecccCCCCcccc---CCCCCCCCcccchHHHHHHHHHHHHhc
Q 004235 83 TVLAYGQTGSGKTYTM---GTGLREGFQTGLIPQVMNALFNKIETL 125 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm---~g~~~~~~~~Giipr~~~~LF~~i~~~ 125 (766)
-||..|+|.|||||-- ++....+--.|-+-...+++|++..+.
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 4899999999999986 233334556687888889999998774
No 309
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=65.92 E-value=1.3e+02 Score=29.03 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQERDRLL 555 (766)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll 555 (766)
+.-|+.++...+.++..+.
T Consensus 26 v~~LEreLe~~q~~~e~~~ 44 (140)
T PF10473_consen 26 VESLERELEMSQENKECLI 44 (140)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3333333333333333333
No 310
>PF14282 FlxA: FlxA-like protein
Probab=65.84 E-value=29 Score=31.78 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004235 534 GKKIMELEEEKRIVQQERDRLL 555 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll 555 (766)
...|..|+.+|..|+.+..+|.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666655544
No 311
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=65.70 E-value=2.5 Score=38.70 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=13.2
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 312
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=65.38 E-value=2.6e+02 Score=32.18 Aligned_cols=75 Identities=32% Similarity=0.384 Sum_probs=41.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004235 604 KHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELL---KLKKEGRKNEFERHKLEALNQRQKMVLQR 680 (766)
Q Consensus 604 k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~---qLkk~~rk~~~ei~~L~~~~~~q~~vLkr 680 (766)
.+.+...-..|+-|+..||.--|.|+-+-..|.++ +.|=|. .+-+-.-+++-+|.+|+. ||-
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQq-------KnksvsqclEmdk~LskKeeeverLQ~--------lkg 470 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEIQQ-------KNKSVSQCLEMDKTLSKKEEEVERLQQ--------LKG 470 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHhhhhHHHHHHHHH--------HHH
Confidence 34455556678889999999999988655444432 222222 222333344455555553 455
Q ss_pred HHHHHH-HHHHHHH
Q 004235 681 KTEEAA-IATKRLK 693 (766)
Q Consensus 681 K~eEa~-a~~krlk 693 (766)
+.|.|. .|..+||
T Consensus 471 elEkat~SALdlLk 484 (527)
T PF15066_consen 471 ELEKATTSALDLLK 484 (527)
T ss_pred HHHHHHHHHHHHHH
Confidence 666555 4444444
No 313
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=65.32 E-value=1.9 Score=48.84 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=33.6
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHH-HHhC--C--cCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~--G--~N~tI~aYGqTGSGKTyTm 98 (766)
..++|+.|-+.+. +-..+.+.+..|+.. .++. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~-~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDI-QKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHH-HHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3577888877643 244555554445543 3343 2 3457899999999999976
No 314
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=65.32 E-value=2.3e+02 Score=31.67 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=52.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 570 QKMQDGHTLKLKALEAQILELK----KKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (766)
Q Consensus 570 ~kl~e~~~~kl~~Le~el~~Lk----~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~ 641 (766)
.-|+.+|...|+.++.+|..|. .|+-+..-|...-+..+..+++-+.|=|.|-+---.|-.++-+|..+.|.
T Consensus 413 eaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRt 488 (593)
T KOG4807|consen 413 EALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRT 488 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566667777777777777774 57777777888778888888888888888777776677666666666554
No 315
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.28 E-value=2.7 Score=47.08 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.8
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457778999999999998
No 316
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.95 E-value=2.8 Score=45.51 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=13.9
Q ss_pred EEEEeecccCCCCccc
Q 004235 82 ATVLAYGQTGSGKTYT 97 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyT 97 (766)
+-|+..||||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 4688999999999975
No 317
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=64.53 E-value=1.9e+02 Score=30.34 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQ--ESQVELLKQKHKSDEAAK 612 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~--~e~~~l~k~k~k~e~~i~ 612 (766)
+....++..+..+++........+ .|.++.|..+.++++.....++.+. ..+.++.|.+.+.++...
T Consensus 100 k~~k~~e~~~~k~~K~~~~~~~~~-----------~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~ 168 (233)
T cd07649 100 KDMKKLDHHIADLRKQLASRYAAV-----------EKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGD 168 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 455666666666666665544443 3456679999999998777766543 224556778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKA 644 (766)
Q Consensus 613 ~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~ 644 (766)
.+..-+......+.+-+..|..-.++|...+.
T Consensus 169 e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee 200 (233)
T cd07649 169 DLMRCVDLYNQAQSKWFEEMVTTSLELERLEV 200 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888877777766443
No 318
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.52 E-value=57 Score=40.41 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 004235 723 KSLQKWLEHEL 733 (766)
Q Consensus 723 ~~~~~wv~~El 733 (766)
..+..||++-+
T Consensus 719 ~~l~~fl~~a~ 729 (782)
T PRK00409 719 ERLDKYLDDAL 729 (782)
T ss_pred HHHHHHHHHHH
Confidence 44666666544
No 319
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=64.45 E-value=4 Score=47.79 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=22.7
Q ss_pred hHhHHHHHhCCcC--EEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N--~tI~aYGqTGSGKTyTm 98 (766)
|+..++..+.|.. ..++.+||+|||||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4555666665553 46788999999999998
No 320
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=64.44 E-value=5.2 Score=45.03 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.6
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
..-|.-.||||.|||+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 566677799999999998
No 321
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=64.35 E-value=1.1e+02 Score=31.00 Aligned_cols=78 Identities=26% Similarity=0.442 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQA 616 (766)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~ 616 (766)
|-.+...-..+..+++.+...+.... -.....+..+.+||..|.+|+.. .+.+-..++..+..|.+|+.
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~~--------~~~~~~e~~i~~Le~ki~el~~~---~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEKE--------AELKELESEIKELEMKILELQRQ---AAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555554321 01122455555566655555432 12344577778888888888
Q ss_pred HHHHHHHHH
Q 004235 617 EIQSIKAQK 625 (766)
Q Consensus 617 Ei~~mK~~k 625 (766)
++..|+..-
T Consensus 167 ~~~~l~~~~ 175 (190)
T PF05266_consen 167 EAEALKEEI 175 (190)
T ss_pred HHHHHHHHH
Confidence 887777654
No 322
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=64.34 E-value=2.2e+02 Score=31.08 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 004235 605 HKSDEAAKRLQAEIQSIKAQKVQLQNK-IKQEAEQFRQWKAS 645 (766)
Q Consensus 605 ~k~e~~i~~L~~Ei~~mK~~kV~L~kk-mkee~~~~r~~k~~ 645 (766)
++...+....+.-+..+..+++.++++ .-+...-...|...
T Consensus 151 ~q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~~~~~sl~~~ 192 (301)
T PF06120_consen 151 EQMQSKASETQATLNDLTEQRIDLIRQKAAEQAGAYNSLKGM 192 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777888888999988874 55555555555443
No 323
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=63.99 E-value=4.2 Score=46.85 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=19.3
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..+++|.| |++.++||||||.+.
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 3445678888 677889999999764
No 324
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=63.87 E-value=3.9e+02 Score=33.78 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=13.3
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
+..+-+|+||||||.-|
T Consensus 26 gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 26 GIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34456799999999866
No 325
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=63.63 E-value=5.1 Score=43.70 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=20.7
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+.+++..++.+- ..|+-.|+||||||+.|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 345566666544 35566799999999987
No 326
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=63.48 E-value=5 Score=44.84 Aligned_cols=35 Identities=14% Similarity=0.413 Sum_probs=26.3
Q ss_pred chhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 60 ~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|..+|+.++..+.. .....+|.-|+.|+||||.+
T Consensus 5 eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 5 EQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 478888887655543 34456788999999999987
No 327
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=63.21 E-value=2.4e+02 Score=31.03 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=16.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004235 571 KMQDGHTLKLKALEAQILELKKKQES 596 (766)
Q Consensus 571 kl~e~~~~kl~~Le~el~~Lk~k~~e 596 (766)
.+....+.+...|+.++..|++...+
T Consensus 172 ~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 172 SIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444566667777777777765555
No 328
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.11 E-value=3.6e+02 Score=33.09 Aligned_cols=145 Identities=20% Similarity=0.290 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQV---------------- 598 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~---------------- 598 (766)
-.|..|+++...++.|+..|+..|......-+.....+. ....++..|-.++..|++-+..+.
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als-~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d 343 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALS-EQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHED 343 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccc
Confidence 345566666666666666666666553221111111222 234566667677777765221110
Q ss_pred -----------HHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 004235 599 -----------ELL-KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHK 666 (766)
Q Consensus 599 -----------~l~-k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~ 666 (766)
+++ -.-......+..|+.||..||.....+..+-+++..+.+..-+.....+..+.+..+..+-.+..
T Consensus 344 ~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~ 423 (717)
T PF09730_consen 344 GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISE 423 (717)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 111 11123445577889999999998888888888888888888888888888888877777777777
Q ss_pred HHHHHHHHHHHHHH
Q 004235 667 LEALNQRQKMVLQR 680 (766)
Q Consensus 667 L~~~~~~q~~vLkr 680 (766)
|+.....=..+--.
T Consensus 424 LE~ELr~l~~~A~E 437 (717)
T PF09730_consen 424 LEKELRALSKLAGE 437 (717)
T ss_pred HHHHHHHHHHHHHh
Confidence 77655543333333
No 329
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=62.98 E-value=1.1e+02 Score=30.86 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLKALEAQILELKKKQESQVE----LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASR 646 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e~~~----l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~ 646 (766)
++-.+++|+.+++.++++.....+ .-.-++..++.-..|..++..++. .++.||.+..+++....+-
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk----~~e~lr~el~k~~e~dpqv 149 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKK----ILESLRWELAKIQETDPQV 149 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCHHH
Confidence 677888999999998876554332 223445555555566777766666 5677788888887755443
No 330
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=62.97 E-value=3.5 Score=43.70 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.3
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 345788999999999986
No 331
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=62.88 E-value=3 Score=45.12 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=40.5
Q ss_pred EEEeecccCCCCccccC----CC----CCC-----CCcccchHHHHHHHHHH-H-Hhc---ccc----------ceeeEE
Q 004235 83 TVLAYGQTGSGKTYTMG----TG----LRE-----GFQTGLIPQVMNALFNK-I-ETL---RHQ----------MEFQLH 134 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm~----g~----~~~-----~~~~Giipr~~~~LF~~-i-~~~---~~~----------~~~~v~ 134 (766)
-...||+|||||++.+- +. .++ .++.|+||-.=...++. + +.. .++ ..-.|.
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~ 168 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVE 168 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccccccee
Confidence 34669999999999872 11 111 24678888754444432 1 110 111 012277
Q ss_pred eehhhhhcceeeeccCCc
Q 004235 135 VSFIEILKEEVRDLLDSV 152 (766)
Q Consensus 135 vS~~EIynE~v~DLL~~~ 152 (766)
+||=|+-.++=+|.=+|.
T Consensus 169 msy~e~t~~~NldI~~p~ 186 (369)
T PF02456_consen 169 MSYDEATSPENLDITNPN 186 (369)
T ss_pred ecHhhhCCccccCCCCch
Confidence 777777777777776654
No 332
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=62.79 E-value=3.3e+02 Score=32.50 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004235 636 AEQFRQWKASREKELLKLKKEGRKNEFERHKLE-ALNQRQK--MVLQRKTEEAAIATKRLKELLEA 698 (766)
Q Consensus 636 ~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~-~~~~~q~--~vLkrK~eEa~a~~krlk~~l~~ 698 (766)
.+.|..+-..-..+|..|+++..+-..-|...+ .....+. .-|..++++...+..-+-.+++-
T Consensus 443 p~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 443 PEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556667777777776666444455555 2222333 23667777766665555555544
No 333
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=62.68 E-value=2.4e+02 Score=30.87 Aligned_cols=140 Identities=24% Similarity=0.285 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 574 DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL 653 (766)
Q Consensus 574 e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qL 653 (766)
+...+|++.||.+-..|+. +.++|...-...|++-..|-.++ ++++.+-+.+ =+....||+.-
T Consensus 163 e~Lq~Klk~LEeEN~~LR~---Ea~~L~~et~~~EekEqqLv~dc----------v~QL~~An~q----ia~LseELa~k 225 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRS---EASQLKTETDTYEEKEQQLVLDC----------VKQLSEANQQ----IASLSEELARK 225 (306)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhhHHHhhccHHHHHHHHHH----------HHHhhhcchh----HHHHHHHHHHH
Confidence 5567888888888777775 34444444444444444443333 2222222222 23456677777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 004235 654 KKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHEL 733 (766)
Q Consensus 654 kk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~wv~~El 733 (766)
..+..+.+.||.+|.++-.. |++|....++.+.-|...|..-|.+.+... +++...=+.=-
T Consensus 226 ~Ee~~rQQEEIt~Llsqivd----lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~---------------aEL~elqdkY~ 286 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVD----LQQRCKQLAAENEELQQHLQASKESQRQLQ---------------AELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence 77778888888888764333 555555556666666666655554443332 23444444555
Q ss_pred HHHHhHHHHHHHHHHH
Q 004235 734 EVSANVHEVRFKYEKQ 749 (766)
Q Consensus 734 e~~~~~~e~~~~~e~~ 749 (766)
|+.-..+||..++-.+
T Consensus 287 E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 287 ECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6777778887766543
No 334
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=62.36 E-value=5.5 Score=45.72 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=14.1
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999876
No 335
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=61.99 E-value=3.2e+02 Score=32.18 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 608 DEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQF 639 (766)
Q Consensus 608 e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~ 639 (766)
++.+.....++..+......+......+.++-
T Consensus 110 e~~L~~re~eLee~~~e~~~~~~~~~~~le~~ 141 (514)
T TIGR03319 110 EKELSNKEKNLDEKEEELEELIAEQREELERI 141 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445444444444444444444433
No 336
>PRK10536 hypothetical protein; Provisional
Probab=61.87 E-value=4.6 Score=42.92 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=15.3
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
.-|+..|++||||||..
T Consensus 75 ~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 75 QLIFATGEAGCGKTWIS 91 (262)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 48899999999999975
No 337
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=61.70 E-value=3.8 Score=41.55 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.0
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...||..||.|||||+.+
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 356888899999999887
No 338
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=61.31 E-value=3.4e+02 Score=32.24 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 533 FGKKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
|+..+.++.+.+..+..+.+++..++...
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~ 292 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNY 292 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666654
No 339
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=61.22 E-value=4.9 Score=45.85 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=19.9
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..+++|-| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4555678887 788899999999874
No 340
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=61.06 E-value=3.2e+02 Score=31.75 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=51.9
Q ss_pred CCCceeeEEeecCCCCCCHHHHHHHHH--HHHHhcccccccc-cccccchHHHHHHHHHHHHHHHHHhHh--hCC-CChH
Q 004235 332 GGNSKTVMIACISPADINAEESLNTLK--YANRARNIQNKPV-VNRDLISSDMQKLRQQLKYLQAELCAR--AGG-APSD 405 (766)
Q Consensus 332 gGns~t~mIa~vSP~~~~~~ETl~TL~--fa~rar~Ikn~p~-vn~d~~~~~i~~L~~~i~~l~~el~~~--~~~-~~~~ 405 (766)
.|++..+=|..-||.+.-.....+++- |-+.-...+.... --.+.....+..++.++...+..|... ..+ ..++
T Consensus 118 ~~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~ 197 (498)
T TIGR03007 118 AGRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPD 197 (498)
T ss_pred cCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 445666666667777666666666642 2222221111110 001222345566666666666666533 222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004235 406 EVQVLKGRIAWLEATNEDLCQELHEYRSRRAVV 438 (766)
Q Consensus 406 ~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 438 (766)
....+..++..++.+......++.....+...+
T Consensus 198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 198 QEGDYYSEISEAQEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223345556666666666666655555554443
No 341
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=60.40 E-value=1.8e+02 Score=28.70 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFR 640 (766)
Q Consensus 607 ~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r 640 (766)
.++.-..|..+...|...-.++|++.++-.++.|
T Consensus 122 lee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 122 LEEREAELKKEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777777777888888887777655
No 342
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=60.27 E-value=3.6 Score=46.18 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.6
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
++.+|+||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578999999999987
No 343
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=60.12 E-value=2e+02 Score=29.26 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 577 TLKLKALEAQILELKKKQESQVELLK-----QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELL 651 (766)
Q Consensus 577 ~~kl~~Le~el~~Lk~k~~e~~~l~k-----~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~ 651 (766)
++++++.+.+|..++.......+|.. ..++-..++..+...++.-...=..|-+++.-...-|+. +++
T Consensus 88 ~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r-------ql~ 160 (194)
T PF15619_consen 88 ERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR-------QLA 160 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHH
Confidence 44555555555555444443333332 223333444444444444333334455555555555554 444
Q ss_pred HHHHhhhhhHHHHHHHHH
Q 004235 652 KLKKEGRKNEFERHKLEA 669 (766)
Q Consensus 652 qLkk~~rk~~~ei~~L~~ 669 (766)
..+++....+.++..|+.
T Consensus 161 ~e~kK~~~~~~~~~~l~~ 178 (194)
T PF15619_consen 161 SEKKKHKEAQEEVKSLQE 178 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 344
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=60.05 E-value=13 Score=41.16 Aligned_cols=29 Identities=38% Similarity=0.482 Sum_probs=22.7
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
...++..++.+. +.|+..|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 456666667654 67888899999999987
No 345
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=60.03 E-value=7.1 Score=42.13 Aligned_cols=29 Identities=38% Similarity=0.510 Sum_probs=23.0
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+.||+ ..+.--+..|-.||+|++|||.++
T Consensus 182 a~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 182 AAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 34555 556677788999999999999987
No 346
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.77 E-value=2.2e+02 Score=29.88 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 511 LEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 511 Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
|+.-+.-...+.......-|..|+ ..|..||+.||+-||.+..=+.+
T Consensus 21 ~~~F~~i~~K~~~~~n~~QKEK~E---~DLKkEIKKLQR~RdQIK~W~~~ 67 (233)
T PF04065_consen 21 VEEFDEIYEKVESATNQNQKEKLE---ADLKKEIKKLQRLRDQIKTWLSS 67 (233)
T ss_pred HHHHHHHHHHHHcccCcchHHHHH---HHHHHHHHHHHHHHHHHHHHccC
Confidence 334444444444334444555566 67889999999999887765543
No 347
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=59.71 E-value=4.1 Score=33.64 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.7
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999877
No 348
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=59.70 E-value=2.2e+02 Score=29.60 Aligned_cols=94 Identities=18% Similarity=0.312 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQA 616 (766)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~ 616 (766)
+.++++.....+++-+++...|+.......++..+++.++-.. |..+|.+... + ..+......++++++
T Consensus 59 l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~---Lq~~Lk~V~t---d-----e~k~~~~~ei~k~r~ 127 (230)
T PF03904_consen 59 LSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDI---LQDELKDVDT---D-----ELKNIAQNEIKKVRE 127 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhch---H-----HHHHHHHHHHHHHHH
Confidence 3455555555666666666666664333333344444444332 3333333311 1 122223333666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 617 EIQSIKAQKVQLQNKIKQEAEQFRQWKASREK 648 (766)
Q Consensus 617 Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~k 648 (766)
|..+|.. ..|...+++++|....-+
T Consensus 128 e~~~ml~-------evK~~~E~y~k~~k~~~~ 152 (230)
T PF03904_consen 128 ENKSMLQ-------EVKQSHEKYQKRQKSMYK 152 (230)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 6665543 344566666665544333
No 349
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=59.59 E-value=5.6 Score=50.91 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=20.1
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCccccC
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm~ 99 (766)
..+++.+-.|....++ ..+||||||+||.
T Consensus 423 ~ai~~a~~~g~r~~Ll-~maTGSGKT~tai 451 (1123)
T PRK11448 423 QAVEKAIVEGQREILL-AMATGTGKTRTAI 451 (1123)
T ss_pred HHHHHHHHhccCCeEE-EeCCCCCHHHHHH
Confidence 3445555567665444 4899999999984
No 350
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=59.51 E-value=6.3 Score=45.22 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=20.4
Q ss_pred cCCCceeeEEeecCCCCCCHHHHHHHHHHHHH
Q 004235 331 LGGNSKTVMIACISPADINAEESLNTLKYANR 362 (766)
Q Consensus 331 LgGns~t~mIa~vSP~~~~~~ETl~TL~fa~r 362 (766)
+.-..+..+|||+..++.+ +..|.+|-+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~Alr 347 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALR 347 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHH
Confidence 4557899999999998864 445666644
No 351
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=59.47 E-value=6.8 Score=47.49 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=21.6
Q ss_pred hhHhHHHHHhC-----CcCEEEEeecccCCCCccccC
Q 004235 68 CVAPLVDGLFQ-----GYNATVLAYGQTGSGKTYTMG 99 (766)
Q Consensus 68 ~v~plV~~~l~-----G~N~tI~aYGqTGSGKTyTm~ 99 (766)
++..+++.+.. |.+..|+. -+||||||+||.
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~ 281 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHH
Confidence 35667777766 34455544 489999999993
No 352
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=59.47 E-value=6.4 Score=42.51 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=16.8
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 454445788999999999887
No 353
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=59.34 E-value=5.3 Score=45.42 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=18.8
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.|. ++.++||||||.+.
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 34456789884 66779999999864
No 354
>PLN03025 replication factor C subunit; Provisional
Probab=59.25 E-value=6.6 Score=42.93 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=15.6
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
|.-.-++-||++|+|||++.
T Consensus 32 ~~~~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSI 51 (319)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33334667999999999988
No 355
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=59.08 E-value=5.3 Score=42.88 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=18.8
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+++.++.. +--|+-+|++|||||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 44444433 556788999999999877
No 356
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=59.08 E-value=3.1e+02 Score=31.07 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=74.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HH
Q 004235 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNK---IKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQR-QK 675 (766)
Q Consensus 600 l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kk---mkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~-q~ 675 (766)
+..++.+.++++-.|+.++++--++--.+.-| .+.|++--+..=+.+|-||..|+++.+..-.+..+.++.-.. -.
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~ 83 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTV 83 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555554443333222222 245555555556677778888888877776666654432221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 004235 676 MVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVYVS 755 (766)
Q Consensus 676 ~vLkrK~eEa~a~~krlk~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~wv~~Ele~~~~~~e~~~~~e~~~~~r~~ 755 (766)
+++. +.|+|.+-+++-++...++.+ ..++.-+..|.-+++.+...+.+|...+.---..|..
T Consensus 84 ~~~~-------~en~~~r~~~eir~~~~q~~e-----------~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~~~r~~s 145 (459)
T KOG0288|consen 84 DVLI-------AENLRIRSLNEIRELREQKAE-----------FENAELALREMRRKMRIAERLAEALKDLGLKDLRRQS 145 (459)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHhhhh-----------hccchhhHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 2222 334555544444443332222 1123457889999999999998887776644444443
Q ss_pred h
Q 004235 756 I 756 (766)
Q Consensus 756 ~ 756 (766)
+
T Consensus 146 ~ 146 (459)
T KOG0288|consen 146 V 146 (459)
T ss_pred h
Confidence 3
No 357
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=58.72 E-value=3.7e+02 Score=31.74 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 659 KNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEAR 699 (766)
Q Consensus 659 k~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~~ 699 (766)
++...+.+.+.....++.-|..+.+++....+.+.+....+
T Consensus 94 kr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~ 134 (514)
T TIGR03319 94 RKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQ 134 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555554444444444433
No 358
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=58.34 E-value=3.9e+02 Score=31.94 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=37.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004235 599 ELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (766)
Q Consensus 599 ~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~ 668 (766)
-|.|.+-..|++.+.-+++|+.+.+.||-.+-+-+- +|..-=..-.-|+++|+++---+..|+.+|.
T Consensus 192 alEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erl---qye~klkstk~e~a~L~Eq~~eK~~e~~rl~ 258 (861)
T KOG1899|consen 192 ALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERL---QYETKLKSTKGEMAPLREQRSEKNDEEMRLL 258 (861)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHhhcccccchhhhHHHHHhhhhhHHHHHH
Confidence 345566667777777777777777777765543322 2222112233467777766555555555443
No 359
>PHA02244 ATPase-like protein
Probab=58.34 E-value=9.3 Score=42.80 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=18.5
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+...+-.|.+. +-+|+||+|||+..
T Consensus 110 ~ri~r~l~~~~PV--LL~GppGtGKTtLA 136 (383)
T PHA02244 110 ADIAKIVNANIPV--FLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 3444444456664 55899999999866
No 360
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.10 E-value=1.2e+02 Score=32.24 Aligned_cols=117 Identities=24% Similarity=0.312 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG---HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAA 611 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~---~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i 611 (766)
.|+.+=..++..|+.|...|+....++.. ..+|+.-+ .+..+.-||.++...++ .-++.+..+
T Consensus 53 qK~e~ek~e~s~LkREnq~l~e~c~~lek----~rqKlshdlq~Ke~qv~~lEgQl~s~Kk----------qie~Leqel 118 (307)
T PF10481_consen 53 QKVEEEKNEYSALKRENQSLMESCENLEK----TRQKLSHDLQVKESQVNFLEGQLNSCKK----------QIEKLEQEL 118 (307)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHH----HHHHhhHHHhhhHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 55666666777888888888877776531 22233222 24455566666655554 223444555
Q ss_pred HHHHHHHHHHHHHHH----HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 004235 612 KRLQAEIQSIKAQKV----QL--------------QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (766)
Q Consensus 612 ~~L~~Ei~~mK~~kV----~L--------------~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~ 669 (766)
++|..|+......-. .| .-.-.---.+|...+....|||. +-++-+.|+.-|++
T Consensus 119 kr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeve----erkrle~e~k~lq~ 190 (307)
T PF10481_consen 119 KRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVE----ERKRLEAEVKALQA 190 (307)
T ss_pred HHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHH----HHhhHHHHHHHHhc
Confidence 555555553322111 00 00001122566677777777774 22344555555554
No 361
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=58.03 E-value=94 Score=28.05 Aligned_cols=80 Identities=29% Similarity=0.383 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cC-Cccch-hhhhhhHHHHH
Q 004235 505 NELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA--AN-SDGHT-QKMQDGHTLKL 580 (766)
Q Consensus 505 ~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~--~~-~~~~~-~kl~e~~~~kl 580 (766)
.+|.++|...|++...+- ++|.+|+.+.+.+..|..+......... +. +.+.. .--...-...|
T Consensus 4 aeLR~qLqFvEEEa~LlR------------Rkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eL 71 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLR------------RKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEEL 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHH
Confidence 567788888887766543 7899999999999888888776553321 00 11110 01112345667
Q ss_pred HHHHHHHHHHHHHHHH
Q 004235 581 KALEAQILELKKKQES 596 (766)
Q Consensus 581 ~~Le~el~~Lk~k~~e 596 (766)
+..+.|+..|..|..+
T Consensus 72 k~a~~qi~~Ls~kv~e 87 (96)
T PF11365_consen 72 KLAREQINELSGKVME 87 (96)
T ss_pred HHHHHHHHHHhhHHHH
Confidence 7788888888776543
No 362
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=58.03 E-value=3.2e+02 Score=30.91 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004235 407 VQVLKGRIAWLEATNEDLCQELHEYRSRRAV 437 (766)
Q Consensus 407 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 437 (766)
...|..++..|..+|..|.-+++.+...|..
T Consensus 45 ~e~l~~rv~slsq~Nkvlk~elet~k~kcki 75 (552)
T KOG2129|consen 45 GESLGARVSSLSQRNKVLKGELETLKGKCKI 75 (552)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhhHHHH
Confidence 4456667777777777777777766665544
No 363
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=57.89 E-value=4.5e+02 Score=32.57 Aligned_cols=95 Identities=19% Similarity=0.273 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-----------HHH
Q 004235 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-----------QVE 599 (766)
Q Consensus 531 ~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e-----------~~~ 599 (766)
.|.+.-|.+.-.+++....|.+..+...-... ...-.|++.+.+.+|-++.+++..+...... ...
T Consensus 48 ~hld~aLkec~~qlr~~ree~eq~i~~~~~~~---s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~ 124 (769)
T PF05911_consen 48 SHLDGALKECMRQLRQVREEQEQKIHEAVAKK---SKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAE 124 (769)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35566777888888888888877776654322 1233455556667777777766665543332 223
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004235 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (766)
Q Consensus 600 l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L 628 (766)
|.+.+...+..+..|..-++.+.+.-.-|
T Consensus 125 l~~~~~~~e~~~~~l~~~l~~~eken~~L 153 (769)
T PF05911_consen 125 LSEEKSQAEAEIEDLMARLESTEKENSSL 153 (769)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666655554443
No 364
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=57.75 E-value=2.5e+02 Score=29.61 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKK 592 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~ 592 (766)
..|.+++...+.++.+..+|.-+++..+.+.+ -..-+.-+....|+..+..++.
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e----~q~~q~y~q~s~Leddlsqt~a 105 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQE----DQRVQFYQQESQLEDDLSQTHA 105 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777766665421111 1111233445566666555554
No 365
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=57.71 E-value=7.4 Score=40.74 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=25.3
Q ss_pred EeecccCCCCcccc------CCCCC--CCCcccchHHHHHHHHHHHHh
Q 004235 85 LAYGQTGSGKTYTM------GTGLR--EGFQTGLIPQVMNALFNKIET 124 (766)
Q Consensus 85 ~aYGqTGSGKTyTm------~g~~~--~~~~~Giipr~~~~LF~~i~~ 124 (766)
..+|++|||||.|+ .|-+- -....++=...+..||..+..
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 46999999999997 23211 012346666777777776655
No 366
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=57.67 E-value=3.3e+02 Score=30.96 Aligned_cols=17 Identities=41% Similarity=0.298 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhhHHHH
Q 004235 648 KELLKLKKEGRKNEFER 664 (766)
Q Consensus 648 kEi~qLkk~~rk~~~ei 664 (766)
|||.|||.+.+|.+.|+
T Consensus 309 kelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 69999999999988883
No 367
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=57.52 E-value=3.9 Score=44.12 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.9
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|++-+||..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 388999999999999999865
No 368
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.44 E-value=1.9e+02 Score=35.51 Aligned_cols=55 Identities=13% Similarity=0.303 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 500 MDKELNELNKRLEQKESEMKLFGDI----DTEALRHHFGKKIMELEEEKRIVQQERDRL 554 (766)
Q Consensus 500 l~~EL~eLnk~Le~KE~e~k~~~~~----~~~~~k~~ye~kl~eLe~ei~~lq~Erd~L 554 (766)
+++++.++..+|+..|..+..+-.. +...--+.+-.++.+|+.++..++....++
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l 330 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEI 330 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777666554321 111101222345666666666665544444
No 369
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=57.43 E-value=6.6 Score=45.26 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=19.6
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..+++|.| |++.++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3456678988 577789999999874
No 370
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=57.42 E-value=11 Score=43.26 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=16.0
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+-+|.+|||||+|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 467888999999999998
No 371
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=57.24 E-value=3.1e+02 Score=30.43 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 004235 723 KSLQKWLEHELEVSANVHEV 742 (766)
Q Consensus 723 ~~~~~wv~~Ele~~~~~~e~ 742 (766)
..+..|.+.-.++.-.+.++
T Consensus 155 ~a~~~y~d~a~n~a~~~~~~ 174 (332)
T TIGR01541 155 SGLADYGETATNVASAAAQL 174 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45777777666665555443
No 372
>PF05729 NACHT: NACHT domain
Probab=57.14 E-value=5 Score=38.33 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.3
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-+|.+|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4788999999999988
No 373
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.06 E-value=52 Score=34.46 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 578 LKLKALEAQILELKKKQESQVELLK 602 (766)
Q Consensus 578 ~kl~~Le~el~~Lk~k~~e~~~l~k 602 (766)
-+++.|+.+|+.|++.+.+.-+++-
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~il 249 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQLIL 249 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3455566666666665555554443
No 374
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=56.96 E-value=6.6 Score=47.96 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.3
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|.-..++-||++|+|||++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 455557888999999999887
No 375
>PRK11519 tyrosine kinase; Provisional
Probab=56.61 E-value=2.8e+02 Score=34.03 Aligned_cols=55 Identities=13% Similarity=0.251 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 500 MDKELNELNKRLEQKESEMKLFGDI----DTEALRHHFGKKIMELEEEKRIVQQERDRL 554 (766)
Q Consensus 500 l~~EL~eLnk~Le~KE~e~k~~~~~----~~~~~k~~ye~kl~eLe~ei~~lq~Erd~L 554 (766)
+++++.++..+|+..|..+..+... +...--+.+-+.+.+++.++..++.+..++
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l 330 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEI 330 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777766554321 111111122234455555555554444443
No 376
>PRK04328 hypothetical protein; Provisional
Probab=56.61 E-value=7.3 Score=41.08 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=22.0
Q ss_pred hHHHHHhCC---cCEEEEeecccCCCCccc
Q 004235 71 PLVDGLFQG---YNATVLAYGQTGSGKTYT 97 (766)
Q Consensus 71 plV~~~l~G---~N~tI~aYGqTGSGKTyT 97 (766)
|-+|.++.| ...+++.+|++|||||..
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 456888876 588899999999999764
No 377
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=56.49 E-value=4.4 Score=42.22 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=13.0
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|.-.|++|||||+-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 466799999999987
No 378
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=56.48 E-value=1.5e+02 Score=30.00 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLKALEAQILELKKKQESQV 598 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e~~ 598 (766)
...++..+..+++++.+...+.+
T Consensus 72 le~~~~~l~~ELael~r~~~el~ 94 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELA 94 (194)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 45566666666666666665533
No 379
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=56.40 E-value=4.7 Score=45.82 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=14.6
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
--++.+|+||||||..|
T Consensus 43 ~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 43 AHTMIIGTTGTGKTTQI 59 (410)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 35789999999999877
No 380
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=56.28 E-value=4.7 Score=44.96 Aligned_cols=51 Identities=27% Similarity=0.456 Sum_probs=28.1
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhC--Cc--CEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--GY--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~--G~--N~tI~aYGqTGSGKTyTm 98 (766)
.++|+.|.+-+. +-+.+.+.+..|+.. ..+. |. ...|+-||++|+|||++.
T Consensus 118 ~~~~~di~Gl~~-~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLEE-QIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChHH-HHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 456666665432 223343333333322 1121 22 345899999999999877
No 381
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=56.16 E-value=4.2 Score=42.69 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=64.6
Q ss_pred ceEEEEEeCCCCcchhccCC---------ceEEEEeCCCcceee---C---ceeEEcceeeCCCCCchhhhhhhhhHhHH
Q 004235 9 SVKVAVHVRPLIGDERAQGC---------KECVAVTHGNPQVQI---G---THSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~---------~~~~~v~~~~~~v~~---~---~~~F~FD~Vf~~~~s~q~~vy~~~v~plV 73 (766)
.-.-+|||-..+.+|..... ...|.|.|.+...++ + .-..+|..|=+-+- +-++|-+.+--||.
T Consensus 98 gsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~-qkqeireavelplt 176 (408)
T KOG0727|consen 98 GSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDV-QKQEIREAVELPLT 176 (408)
T ss_pred CCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchh-hHHHHHHHHhccch
Confidence 34567888888888763322 112233332221111 1 12345555544443 34566666666766
Q ss_pred HHHhC---CcC--EEEEeecccCCCCccccC-----C--CCC----C---CCcccchHHHHHHHHHHHHhccc
Q 004235 74 DGLFQ---GYN--ATVLAYGQTGSGKTYTMG-----T--GLR----E---GFQTGLIPQVMNALFNKIETLRH 127 (766)
Q Consensus 74 ~~~l~---G~N--~tI~aYGqTGSGKTyTm~-----g--~~~----~---~~~~Giipr~~~~LF~~i~~~~~ 127 (766)
..=+- |.+ -.|+.||+.|+|||-..- + .|- + ....|==||.++++|+...+..+
T Consensus 177 ~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenap 249 (408)
T KOG0727|consen 177 HADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP 249 (408)
T ss_pred HHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCC
Confidence 65441 444 358999999999985431 0 000 0 01236669999999998766433
No 382
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=55.99 E-value=5.6e+02 Score=33.04 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 647 EKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (766)
Q Consensus 647 ~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~ 698 (766)
+|.+-..+.+.-..+.....|+...++-.+.|.+|++...+++.|-+.+..+
T Consensus 1646 ~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~e 1697 (1758)
T KOG0994|consen 1646 EKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTE 1697 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 3344334444444444555788889999999999999999999988877654
No 383
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=55.91 E-value=4.9 Score=41.77 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=15.9
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...++-||++|+|||++.
T Consensus 12 ~~~~liyG~~G~GKtt~a 29 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTI 29 (220)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999987
No 384
>PRK00106 hypothetical protein; Provisional
Probab=55.69 E-value=4.2e+02 Score=31.45 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 661 EFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (766)
Q Consensus 661 ~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~ 698 (766)
..++.+-+..-.+++..|..+.+++....+.+.++.+.
T Consensus 117 ee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~ 154 (535)
T PRK00106 117 DENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQ 154 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333434444444444444444444444444444433
No 385
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=55.68 E-value=5.4 Score=39.47 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.4
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
+..+-||++|+|||+.|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45567899999999987
No 386
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=55.32 E-value=2.7e+02 Score=30.35 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cC--Ccc--chhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 530 RHHFGKKIMELEEEKRIVQQERDRLLAEIENLA---AN--SDG--HTQKMQ---DGHTLKLKALEAQILELKKKQESQVE 599 (766)
Q Consensus 530 k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~---~~--~~~--~~~kl~---e~~~~kl~~Le~el~~Lk~k~~e~~~ 599 (766)
-..|+.++.+|.+|.+.|+.|.-+..-.-...+ ++ .|+ +.=.++ |++ .-|+.+++.|+-|+.--.+
T Consensus 61 vrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEER----R~lQgEmQ~LrDKLAiaER 136 (351)
T PF07058_consen 61 VRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEER----RFLQGEMQQLRDKLAIAER 136 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999866544322221 11 121 221222 223 2378888888877765444
Q ss_pred H
Q 004235 600 L 600 (766)
Q Consensus 600 l 600 (766)
-
T Consensus 137 t 137 (351)
T PF07058_consen 137 T 137 (351)
T ss_pred H
Confidence 3
No 387
>PRK04195 replication factor C large subunit; Provisional
Probab=55.30 E-value=7.5 Score=45.20 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=21.8
Q ss_pred hHhHHHHHhCCc-CEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~-N~tI~aYGqTGSGKTyTm 98 (766)
+...+.....|. ...++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444455555554 457888999999999987
No 388
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.15 E-value=1.3e+02 Score=29.70 Aligned_cols=55 Identities=29% Similarity=0.389 Sum_probs=31.7
Q ss_pred hchHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004235 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (766)
Q Consensus 498 ~~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~ 562 (766)
.+|..++.+|...+...++++..+...-+ ..+|...|..++.|...+...|..+.
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t----------~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLSSEPT----------NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777766543322 13444555555555555555555543
No 389
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=55.06 E-value=4.9 Score=38.08 Aligned_cols=15 Identities=53% Similarity=0.853 Sum_probs=13.1
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
++-||++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 467899999999977
No 390
>PRK11546 zraP zinc resistance protein; Provisional
Probab=55.04 E-value=74 Score=30.84 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004235 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQ 597 (766)
Q Consensus 527 ~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~ 597 (766)
+.+.+.|..+...|.+++..-+.|...|+. ..++| .+++++|.+||.+|+.+..++
T Consensus 53 q~I~~~f~~~t~~LRqqL~aKr~ELnALl~-----~~~pD----------~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQLVSKRYEYNALLT-----ANPPD----------SSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCC----------HHHHHHHHHHHHHHHHHHHHH
No 391
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=54.99 E-value=4.2e+02 Score=31.28 Aligned_cols=104 Identities=21% Similarity=0.302 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH------
Q 004235 526 TEALRHHFGKKIMELEE---EKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES------ 596 (766)
Q Consensus 526 ~~~~k~~ye~kl~eLe~---ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e------ 596 (766)
++..+.+|..-+.+|.. ++..++.|.+.++.+-.... +.-+.+....+...+++..|..+|..|+..+..
T Consensus 118 le~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~-~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~ 196 (522)
T PF05701_consen 118 LESAREQYASAVAELDSVKQELEKLRQELASALDAKNAAL-KQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHI 196 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666655555544 33333333333332211111 111122233344566666666666666533221
Q ss_pred ----------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 597 ----------------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (766)
Q Consensus 597 ----------------~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~k 630 (766)
...+.+.....+..+..|+.++...+.-+++|..
T Consensus 197 eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~ 246 (522)
T PF05701_consen 197 EAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAE 246 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344566777777888888776666665443
No 392
>PRK14974 cell division protein FtsY; Provisional
Probab=54.64 E-value=13 Score=41.26 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=16.0
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+-.|++|+|||+|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467888999999999998
No 393
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=54.55 E-value=4.1 Score=49.77 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (766)
Q Consensus 610 ~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~ 641 (766)
++..+...|..+|++=+.|-.++-++..+...
T Consensus 357 ~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~ 388 (713)
T PF05622_consen 357 KARALKSQLEEYKKQIQELEQKLSEESRRADK 388 (713)
T ss_dssp --------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666555555555555554443
No 394
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=54.29 E-value=4.1e+02 Score=30.98 Aligned_cols=139 Identities=23% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 574 DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKV-QLQNKIKQEAEQFRQWKASREKELLK 652 (766)
Q Consensus 574 e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV-~L~kkmkee~~~~r~~k~~~~kEi~q 652 (766)
|....||+.++.++..|+.|.- .++.=..=...-+.+-| .+.|++|+-..+.+- -.+||.+
T Consensus 162 EaL~ekLk~~~een~~lr~k~~--------------llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s----~~eel~~ 223 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAM--------------LLKTETLTYEEKEQQLYGDCVKELRDTNTQARS----GQEELQS 223 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHH--------------HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCHHHHHHHHHHH
Q 004235 653 LKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHE 732 (766)
Q Consensus 653 Lkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~wv~~E 732 (766)
+-++.-+.+-++.+|.+ |-.=++.|.-.....+.-+.+.|..-+.+.+...+ +....=+.+
T Consensus 224 kt~el~~q~Ee~skLls----ql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~a---------------E~~EleDky 284 (596)
T KOG4360|consen 224 KTKELSRQQEENSKLLS----QLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTA---------------ELEELEDKY 284 (596)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---------------HHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHH
Q 004235 733 LEVSANVHEVRFKYEKQ 749 (766)
Q Consensus 733 le~~~~~~e~~~~~e~~ 749 (766)
.|.+-..|||+.+|..+
T Consensus 285 AE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 285 AECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHhh
No 395
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=54.25 E-value=3e+02 Score=29.44 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (766)
Q Consensus 611 i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~ 641 (766)
.+.|...|..+|..+-+|+..+-+=.+.|-.
T Consensus 156 ~~el~~K~~~~k~~~e~Ll~~LgeFLeeHfP 186 (268)
T PF11802_consen 156 FQELKTKIEKIKEYKEKLLSFLGEFLEEHFP 186 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3778888888888888888888776666544
No 396
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=54.19 E-value=76 Score=29.19 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 004235 405 DEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEH 440 (766)
Q Consensus 405 ~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 440 (766)
.++..|+..+..|-++|..|+.|...+|.++...+.
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888889999999999999998888776654
No 397
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=54.16 E-value=7.1 Score=39.60 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=18.8
Q ss_pred HHHhCCc---CEEEEeecccCCCCcccc
Q 004235 74 DGLFQGY---NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 74 ~~~l~G~---N~tI~aYGqTGSGKTyTm 98 (766)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4445443 577899999999999865
No 398
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.02 E-value=8.3 Score=44.61 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=19.5
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|..++.|.|+ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 345667889874 56679999999864
No 399
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.98 E-value=66 Score=33.76 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=47.9
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHh----hhccCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Q 004235 491 WEHALWQNTMDKELNELNKRLEQKESEMK----LFGDIDTEALRHHFGKKIMELEEE-KRIVQQERDRLLAEIENLA 562 (766)
Q Consensus 491 ~e~~~~q~~l~~EL~eLnk~Le~KE~e~k----~~~~~~~~~~k~~ye~kl~eLe~e-i~~lq~Erd~Ll~~l~~~~ 562 (766)
.+|...+..|..|++.|.+.|.+|..++- .+..-.. .++|+..+..+..+ +..|+++.++++.+++.+.
T Consensus 221 ~dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa---d~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 221 GDHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA---DKEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666788889999999999988876652 2211111 14666666666666 7788888888888888764
No 400
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=53.97 E-value=8.3 Score=39.77 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=22.9
Q ss_pred HhHHHHHhCC---cCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G---~N~tI~aYGqTGSGKTyTm 98 (766)
-|-+|.++.| ...++.-+|++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3556777875 4567889999999999876
No 401
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=53.81 E-value=1.8e+02 Score=26.62 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004235 533 FGKKIMELEEEKRIVQQER 551 (766)
Q Consensus 533 ye~kl~eLe~ei~~lq~Er 551 (766)
|.+++..+..++..++.+.
T Consensus 15 ~q~~~~~l~~q~~~le~~~ 33 (110)
T TIGR02338 15 LQQQLQAVATQKQQVEAQL 33 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555554444
No 402
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=53.71 E-value=10 Score=40.28 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=21.4
Q ss_pred hhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 67 ~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.++..++..+..|.+. +-+|++|+|||+..
T Consensus 9 ~l~~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 9 RVTSRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 4455566666667655 56899999999865
No 403
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=53.67 E-value=6.3 Score=46.44 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=30.6
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+.-+|+.+++.+. .+..+...++.+....|+-||++|+|||+.-
T Consensus 60 rp~~f~~iiGqs~---------~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 60 RPKSFDEIIGQEE---------GIKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CcCCHHHeeCcHH---------HHHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 4567888886431 1344444556677778889999999999854
No 404
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=53.60 E-value=5.6 Score=42.15 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=20.3
Q ss_pred ceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 004235 335 SKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (766)
Q Consensus 335 s~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d 375 (766)
++|++++|- +.+|. ++.|+|.--+...-++-.+
T Consensus 186 ~kTivfVTH-----DidEA---~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 186 GKTIVFVTH-----DIDEA---LKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred CCEEEEEec-----CHHHH---HhhhceEEEecCCeEEEeC
Confidence 567666662 45554 6788877766665555444
No 405
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=53.60 E-value=5.7e+02 Score=32.38 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHhcccCcc--cccCCCCCCCCCcEEEEEEEEE
Q 004235 196 NTLQEMAACLEQGSLSRA--TGSTNMNNQSSRSHAIFTITLE 235 (766)
Q Consensus 196 ~s~~e~~~~l~~g~~~R~--~~~t~~N~~SSRSH~Ifti~v~ 235 (766)
+|.-|++.+=-.|...|. ...-.+....+++ +.+.+.+.
T Consensus 39 SSIldAI~~ALyG~~~~~~~~~~~~~i~~g~~~-~~V~l~F~ 79 (908)
T COG0419 39 SSILDAITFALYGKTPRLGAFSLDDLIRAGEKS-ASVELEFE 79 (908)
T ss_pred HHHHHHHHHHHcCCCCCccchhhhHHHhcCCcc-EEEEEEEE
Confidence 466666666666666653 2233344444555 65555554
No 406
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=53.52 E-value=1.1e+02 Score=27.86 Aligned_cols=57 Identities=30% Similarity=0.332 Sum_probs=35.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 571 KMQDGHTLKLKALEAQILELKKKQE-SQ---VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNK 631 (766)
Q Consensus 571 kl~e~~~~kl~~Le~el~~Lk~k~~-e~---~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kk 631 (766)
||..+| ..|..+...|++..- ++ ..|...-...|..++++..|+..|--.--+|.|+
T Consensus 2 kla~eY----sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kR 62 (102)
T PF10205_consen 2 KLAQEY----SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKR 62 (102)
T ss_pred hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555 446777777775433 23 3344455566778888888888886555555443
No 407
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=53.48 E-value=5.7 Score=45.44 Aligned_cols=17 Identities=47% Similarity=0.601 Sum_probs=14.6
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-.|+||+|||+|+
T Consensus 222 ~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 222 GVVALVGPTGVGKTTTL 238 (424)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36677799999999998
No 408
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=53.42 E-value=3.6e+02 Score=30.10 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhh-cccccccc
Q 004235 735 VSANVHEVRFKYEKQSQVYVSIL-YFPCTCYL 765 (766)
Q Consensus 735 ~~~~~~e~~~~~e~~~~~r~~~~-~~~~~~~~ 765 (766)
+...+.+++..++.......... +=||.+++
T Consensus 251 ~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V 282 (423)
T TIGR01843 251 AQARLAELRERLNKARDRLQRLIIRSPVDGTV 282 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcEEECCCCcEE
Confidence 44445555656655554444333 66777664
No 409
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=53.40 E-value=26 Score=41.63 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=38.6
Q ss_pred cceeeCCCCCchhhhhhhhhHhHHHHHh--CCcCEEEEeecccCCCCcc---------------ccCC----CCCCCCcc
Q 004235 50 FDHVYGNGGSPSSAMFGECVAPLVDGLF--QGYNATVLAYGQTGSGKTY---------------TMGT----GLREGFQT 108 (766)
Q Consensus 50 FD~Vf~~~~s~q~~vy~~~v~plV~~~l--~G~N~tI~aYGqTGSGKTy---------------Tm~g----~~~~~~~~ 108 (766)
|+.+|| ++++-+.++..+...+. ..-...++-.||+|+|||. ++-| ++-...-.
T Consensus 75 F~d~yG-----lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL 149 (644)
T PRK15455 75 FEEFYG-----MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPL 149 (644)
T ss_pred hhcccC-----cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCC
Confidence 555664 34555555655544333 3444567777999999994 4433 22223345
Q ss_pred cch-HHHHHHHHHH
Q 004235 109 GLI-PQVMNALFNK 121 (766)
Q Consensus 109 Gii-pr~~~~LF~~ 121 (766)
|+| |.-...+|..
T Consensus 150 ~L~p~~~~~~~le~ 163 (644)
T PRK15455 150 GLFDPDEDGPILEE 163 (644)
T ss_pred CCCChhhhHHHHHH
Confidence 888 5556666643
No 410
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=53.34 E-value=96 Score=38.42 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=18.9
Q ss_pred HHHHHH-HhHHHHHHHHHHHHHHHHhhhccccc
Q 004235 731 HELEVS-ANVHEVRFKYEKQSQVYVSILYFPCT 762 (766)
Q Consensus 731 ~Ele~~-~~~~e~~~~~e~~~~~r~~~~~~~~~ 762 (766)
.||++. +++.||...|++-+. +|.++-++|.
T Consensus 694 ~~ldl~G~~~~eA~~~l~~~ld-~a~~~g~~~v 725 (771)
T TIGR01069 694 LTLDLRGQRSEEALDRLEKFLN-DALLAGYEVV 725 (771)
T ss_pred ceEECCCCCHHHHHHHHHHHHH-HHHHCCCCEE
Confidence 455543 466777777777663 4555566554
No 411
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=53.31 E-value=4.3e+02 Score=30.92 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=10.2
Q ss_pred ceeeEEeecCCCCC
Q 004235 335 SKTVMIACISPADI 348 (766)
Q Consensus 335 s~t~mIa~vSP~~~ 348 (766)
++..+|-+|.|...
T Consensus 49 ~~y~ii~~vd~~~~ 62 (489)
T PF05262_consen 49 GRYYIIHAVDPEEK 62 (489)
T ss_pred CcEEEEEecCcccc
Confidence 57778888888643
No 412
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=53.25 E-value=4.6e+02 Score=31.20 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=4.7
Q ss_pred hhcceeeecc
Q 004235 140 ILKEEVRDLL 149 (766)
Q Consensus 140 IynE~v~DLL 149 (766)
.||+.++|.+
T Consensus 27 ~~n~~f~d~f 36 (582)
T PF09731_consen 27 KQNDNFRDFF 36 (582)
T ss_pred hcChHHHHHH
Confidence 3444444444
No 413
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=52.97 E-value=3.4e+02 Score=29.59 Aligned_cols=121 Identities=24% Similarity=0.366 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHH-HhccccccCCCccccc
Q 004235 379 SDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRS---RRAVV-EHCGTDAQEGPVSFVK 454 (766)
Q Consensus 379 ~~i~~L~~~i~~l~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 454 (766)
.++.+|-+.|..|..-+++ ||....-+..-+.++..|.++...|.+||..... |.+.. .-.|.|..+..
T Consensus 35 ~EVEKLsqTi~ELEEaiLa--gGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkv----- 107 (351)
T PF07058_consen 35 LEVEKLSQTIRELEEAILA--GGAAANAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKV----- 107 (351)
T ss_pred HHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCcc-----
Confidence 3455666666666555543 4444555566666677777777777666665432 22111 01122211110
Q ss_pred cchhhhhcccccCCchhhhhhhcCCCChhHHHHHHHH--HHHHhhhchHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHH
Q 004235 455 SDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEW--EHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHH 532 (766)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--e~~~~q~~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ 532 (766)
+ ..+.| |.. =|..|++.|..+|++-|...+. ...|+..
T Consensus 108 -----------------------------M--PVKqWLEERR----~lQgEmQ~LrDKLAiaERtAka-----EaQLkeK 147 (351)
T PF07058_consen 108 -----------------------------M--PVKQWLEERR----FLQGEMQQLRDKLAIAERTAKA-----EAQLKEK 147 (351)
T ss_pred -----------------------------c--cHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 0 02344 222 2567888888888888876543 2357778
Q ss_pred HHHHHHHHHHHHHH
Q 004235 533 FGKKIMELEEEKRI 546 (766)
Q Consensus 533 ye~kl~eLe~ei~~ 546 (766)
|.-+|..||+-.+.
T Consensus 148 ~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 148 LKLRLKVLEEGLKG 161 (351)
T ss_pred HHHHHHHHHhhccC
Confidence 88888888875543
No 414
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=52.95 E-value=9.9 Score=43.80 Aligned_cols=17 Identities=53% Similarity=0.751 Sum_probs=15.2
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56889999999999987
No 415
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=52.73 E-value=6.7 Score=43.70 Aligned_cols=41 Identities=27% Similarity=0.492 Sum_probs=28.5
Q ss_pred cCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcc
Q 004235 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE 143 (766)
+-.-|+-||.+||||||+. +.+|+..+ .-.|+++++|-|.=
T Consensus 29 ~PS~~~iyG~sgTGKT~~~-----------------r~~l~~~n------~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLV-----------------RQLLRKLN------LENVWLNCVECFTY 69 (438)
T ss_pred cceeEEEeccCCCchhHHH-----------------HHHHhhcC------CcceeeehHHhccH
Confidence 4445689999999999987 33454431 23578888888753
No 416
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=52.63 E-value=8.5 Score=46.84 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=25.5
Q ss_pred hhhhhhhHhHHHHH-hCCcCEEEEeecccCCCCcccc
Q 004235 63 AMFGECVAPLVDGL-FQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 63 ~vy~~~v~plV~~~-l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.||... ......+ -.|.|-||+..|.+|||||+|+
T Consensus 67 Hif~~a-~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVA-QRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHH-HHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhh-hcccccccccccccceeeccccccccccch
Confidence 466543 3333333 3589999999999999999996
No 417
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=52.33 E-value=6.8 Score=42.06 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=19.3
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|++-+|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999876
No 418
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=52.18 E-value=6.1 Score=45.84 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=15.1
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|.-.|+||+|||+|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 46777899999999998
No 419
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=52.15 E-value=5.1e+02 Score=31.46 Aligned_cols=158 Identities=25% Similarity=0.297 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhh-------HHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHhh
Q 004235 538 MELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG-------HTLKLKALEAQILELKKKQES-QVEL---LKQKHK 606 (766)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~-------~~~kl~~Le~el~~Lk~k~~e-~~~l---~k~k~k 606 (766)
..|..|...|..|||++.++|.-.+.-........+|+ |...-+.|+..+.+-+....+ ..+| .+-...
T Consensus 474 ~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe 553 (739)
T PF07111_consen 474 TDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE 553 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 47788999999999999999874321111111222333 333444444444333322221 1111 123345
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHH-
Q 004235 607 SDEAAKRLQAEIQSIKAQKV-QLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKM---VLQRK- 681 (766)
Q Consensus 607 ~e~~i~~L~~Ei~~mK~~kV-~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~---vLkrK- 681 (766)
+....-.|+.|+...+.... .|+.++.+--.++++.=...+|.+...+++.-|.-.-++.++.+..+-+- =+.|-
T Consensus 554 s~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~~E~~~lq 633 (739)
T PF07111_consen 554 STEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERNQELRRLQ 633 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence 56667789999999987776 57889988888888888888888888888887777777777666655431 12222
Q ss_pred ----HHHHHHHHHHHHHH
Q 004235 682 ----TEEAAIATKRLKEL 695 (766)
Q Consensus 682 ----~eEa~a~~krlk~~ 695 (766)
.+|..-..+||+++
T Consensus 634 ~e~~~~e~~rl~~rlqel 651 (739)
T PF07111_consen 634 EEARKEEGQRLTQRLQEL 651 (739)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 23445567777764
No 420
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.14 E-value=8.6 Score=43.75 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=19.7
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+...+-.+.-..++-||++|+|||++.
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 444444565557777999999999876
No 421
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=52.08 E-value=6 Score=37.78 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=12.8
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+..|.+|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999864
No 422
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=52.04 E-value=2.8e+02 Score=28.38 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004235 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEG 657 (766)
Q Consensus 578 ~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~ 657 (766)
.-|+.++.++.+|+++...+.+--..-.....+++.+..+|..++-..--|-. |-|+...+|+ .|....
T Consensus 62 epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~q---------r~~kle~Erd--eL~~kf 130 (201)
T PF13851_consen 62 EPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQ---------RFEKLEQERD--ELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH--HHHHHH
Confidence 34555566666666666555554444444455555555555555544433322 2222222222 222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 658 RKNEFERHKLEALNQRQKMVLQRKTEEAAIA 688 (766)
Q Consensus 658 rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~ 688 (766)
..-|...+....-+..+|.+|.......
T Consensus 131 ---~~~i~evqQk~~~kn~lLEkKl~~l~~~ 158 (201)
T PF13851_consen 131 ---ESAIQEVQQKTGLKNLLLEKKLQALSEQ 158 (201)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234455555566667788887765543
No 423
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.86 E-value=5.7 Score=43.94 Aligned_cols=120 Identities=22% Similarity=0.341 Sum_probs=65.8
Q ss_pred CceEEEEEeCCCCcchh-ccCCceEEE--------EeCCC--cceee----CceeEEcceeeCCCCCchhhhhhhhhHhH
Q 004235 8 CSVKVAVHVRPLIGDER-AQGCKECVA--------VTHGN--PQVQI----GTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~-~~~~~~~~~--------v~~~~--~~v~~----~~~~F~FD~Vf~~~~s~q~~vy~~~v~pl 72 (766)
+.-+.+|++.|...++. ..|+..++. +.|.+ |.|.. ..-.-+|+.|=+-+ .|-+++.+.+.-||
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~-~Qi~EirE~VELPL 171 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLD-EQIQEIREVVELPL 171 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHH-HHHHHHHHHhcccc
Confidence 34567888888887764 344443322 22222 22211 11234555554432 23456777666666
Q ss_pred HH-HHhC--CcCE--EEEeecccCCCCccccC-----CC--CC--CC-----CcccchHHHHHHHHHHHHhcccc
Q 004235 73 VD-GLFQ--GYNA--TVLAYGQTGSGKTYTMG-----TG--LR--EG-----FQTGLIPQVMNALFNKIETLRHQ 128 (766)
Q Consensus 73 V~-~~l~--G~N~--tI~aYGqTGSGKTyTm~-----g~--~~--~~-----~~~Giipr~~~~LF~~i~~~~~~ 128 (766)
.. .+|. |..- .|+-||+.|+|||-.-- ++ |- .+ ..-|==+|.+++||.......+.
T Consensus 172 ~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPs 246 (406)
T COG1222 172 KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPS 246 (406)
T ss_pred cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCe
Confidence 54 3333 5543 58999999999986430 00 00 00 01244489999999988765443
No 424
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=51.82 E-value=1.6e+02 Score=35.00 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q 004235 576 HTLKLKALEA 585 (766)
Q Consensus 576 ~~~kl~~Le~ 585 (766)
|++++.+++.
T Consensus 196 yk~~v~~i~~ 205 (555)
T TIGR03545 196 YKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHh
Confidence 5666655554
No 425
>PRK10865 protein disaggregation chaperone; Provisional
Probab=51.80 E-value=12 Score=46.63 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=0.0
Q ss_pred cceeeCCCCCchhhhhhhhhHhHHHHHhCCcC------EEEEeecccCCCCccc
Q 004235 50 FDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN------ATVLAYGQTGSGKTYT 97 (766)
Q Consensus 50 FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N------~tI~aYGqTGSGKTyT 97 (766)
+.+|+| |+..-.. +...|..+..|.+ +.++-+|+||+|||++
T Consensus 567 ~~~viG-----Q~~ai~~-l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~l 614 (857)
T PRK10865 567 HHRVIG-----QNEAVEA-VSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTEL 614 (857)
T ss_pred CCeEeC-----CHHHHHH-HHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHH
No 426
>PF13166 AAA_13: AAA domain
Probab=51.76 E-value=5.2e+02 Score=31.43 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 530 RHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVE 599 (766)
Q Consensus 530 k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~ 599 (766)
...+.....++...+..+....+.+...|........... .+ +.....+..+..-+..+.....++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~-~~-~~~~~~~~~l~~~i~~~n~~i~~~n~ 384 (712)
T PF13166_consen 317 YEEFEEDKEELKSAIEALKEELEELKKALEKKIKNPSSPI-EL-EEINEDIDELNSIIDELNELIEEHNE 384 (712)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cc-cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888889999999998888888877432211111 11 12233334455555555554444444
No 427
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=51.62 E-value=10 Score=41.48 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=21.5
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
|.+.-..+-+.-++-||+.|||||.+|
T Consensus 14 l~~~~~~~~~~r~vL~G~~GsGKS~~L 40 (309)
T PF10236_consen 14 LKEADKSSKNNRYVLTGERGSGKSVLL 40 (309)
T ss_pred HHHhcccCCceEEEEECCCCCCHHHHH
Confidence 333344567788999999999999998
No 428
>PF13173 AAA_14: AAA domain
Probab=51.44 E-value=6.6 Score=36.69 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.4
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999988
No 429
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=51.33 E-value=3.1e+02 Score=28.76 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 575 GHTLKLKALEAQILELKKKQES--QVE---LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQW 642 (766)
Q Consensus 575 ~~~~kl~~Le~el~~Lk~k~~e--~~~---l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~ 642 (766)
..+.....|..+|.+|...... +.+ -..+-.+-+.-...++..|..=|..+..=+..++.+.+....|
T Consensus 118 ~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~ 190 (247)
T PF06705_consen 118 DIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRR 190 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666543332 111 1223344444455555555555555555555555555544443
No 430
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=51.28 E-value=7.7 Score=43.51 Aligned_cols=43 Identities=30% Similarity=0.536 Sum_probs=27.8
Q ss_pred EcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCccc
Q 004235 49 TFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYT 97 (766)
Q Consensus 49 ~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyT 97 (766)
+||.|++ |+.+... ..||=.-+-.|--...+-||+.|+|||..
T Consensus 22 ~lde~vG-----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG-----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC-----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 5555653 3344333 34444444457777888999999999975
No 431
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=50.97 E-value=11 Score=40.18 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=22.5
Q ss_pred cCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHH
Q 004235 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFN 120 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~ 120 (766)
.-+||+..|-.|||||.-| +|...+|+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~-------------QrL~~hl~~ 45 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM-------------QRLNSHLHA 45 (366)
T ss_pred CCcEEEEEecCCCCchhHH-------------HHHHHHHhh
Confidence 3569999999999999877 666666664
No 432
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=50.91 E-value=6.7 Score=38.75 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=13.1
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+.+|++|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999863
No 433
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=50.89 E-value=3.4e+02 Score=29.00 Aligned_cols=17 Identities=18% Similarity=0.589 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004235 638 QFRQWKASREKELLKLK 654 (766)
Q Consensus 638 ~~r~~k~~~~kEi~qLk 654 (766)
+|.+|-..+.++..+.+
T Consensus 134 ~y~eWl~~K~~q~~~~~ 150 (264)
T PF13904_consen 134 KYQEWLQRKEEQERKQR 150 (264)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555544444443
No 434
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=50.89 E-value=1.6e+02 Score=28.33 Aligned_cols=40 Identities=23% Similarity=0.468 Sum_probs=26.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 604 KHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWK 643 (766)
Q Consensus 604 k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k 643 (766)
.+....++.........+-.++-+-|..++.|.+.+|.|-
T Consensus 59 ~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 59 NEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHh
Confidence 3344444555555666666677777778888888888884
No 435
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=50.82 E-value=3.5e+02 Score=33.67 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 611 AKRLQAEIQSIKAQKVQLQNKIKQEAE 637 (766)
Q Consensus 611 i~~L~~Ei~~mK~~kV~L~kkmkee~~ 637 (766)
...|..+...++..|-+++.+.++|++
T Consensus 545 ~~~l~~~~~~l~~~~~~~~~~a~~ea~ 571 (771)
T TIGR01069 545 KKELEQEMEELKERERNKKLELEKEAQ 571 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555544444443
No 436
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=50.74 E-value=8.8 Score=46.20 Aligned_cols=25 Identities=44% Similarity=0.636 Sum_probs=19.6
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4455677877 678889999999875
No 437
>PRK11281 hypothetical protein; Provisional
Probab=50.72 E-value=6.9e+02 Score=32.50 Aligned_cols=244 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccch
Q 004235 490 EWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHT 569 (766)
Q Consensus 490 e~e~~~~q~~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~ 569 (766)
+.+.+.....++.=+.-|++..+.+++ -..|++++.....+++..+++.+++...............
T Consensus 55 ~~~~k~~~~~l~~tL~~L~qi~~~~~~-------------~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~ 121 (1113)
T PRK11281 55 EAEDKLVQQDLEQTLALLDKIDRQKEE-------------TEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTL 121 (1113)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhHHHHHHHHHHHHHhhcccccccccccccc
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 004235 570 QKMQDGHTLKLKALEAQILELKKKQES-QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN--KIKQEAEQFRQWKASR 646 (766)
Q Consensus 570 ~kl~e~~~~kl~~Le~el~~Lk~k~~e-~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~k--kmkee~~~~r~~k~~~ 646 (766)
.. .+-+++|.+++.++.+.+....+ .+++..++..-++.-..+..--+++..-..+|.. -=.+.....+.|...-
T Consensus 122 Sl--~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~a 199 (1113)
T PRK11281 122 SL--RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQA 199 (1113)
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCC
Q 004235 647 EKELLKLKKEGRKNEFE-RHKLEALNQRQKMVLQRKTE---------EAAIATKRLKELLEARKSSARENSVNSTGYTTP 716 (766)
Q Consensus 647 ~kEi~qLkk~~rk~~~e-i~~L~~~~~~q~~vLkrK~e---------Ea~a~~krlk~~l~~~k~~~~~~~~~~~~~~~~ 716 (766)
|.....++.+..+++-. -..++...+.|...++.+.+ ..+...||+++.-+.-+.+.+.......+.++
T Consensus 200 e~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p- 278 (1113)
T PRK11281 200 EQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANP- 278 (1113)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCh-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 004235 717 TGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVYVSI 756 (766)
Q Consensus 717 ~~~~~~~~~~~wv~~Ele~~~~~~e~~~~~e~~~~~r~~~ 756 (766)
-++.-++.=.+..-...++-..++.+.++...+
T Consensus 279 -------~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~ 311 (1113)
T PRK11281 279 -------LVAQELEINLQLSQRLLKATEKLNTLTQQNLRV 311 (1113)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 438
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=50.71 E-value=9.6 Score=45.94 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=17.6
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
|..++..- ..++..|++|||||||+
T Consensus 166 v~~~l~~~-~~~lI~GpPGTGKT~t~ 190 (637)
T TIGR00376 166 VSFALSSK-DLFLIHGPPGTGKTRTL 190 (637)
T ss_pred HHHHhcCC-CeEEEEcCCCCCHHHHH
Confidence 44444322 34568999999999998
No 439
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=50.51 E-value=8.8 Score=42.12 Aligned_cols=17 Identities=47% Similarity=0.643 Sum_probs=14.8
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..++-||++|+|||+..
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 35778999999999987
No 440
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=50.47 E-value=2.4e+02 Score=27.07 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=31.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 570 QKMQDGHTLKLKALEAQILELKKKQESQVELL--KQKHK-SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (766)
Q Consensus 570 ~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~--k~k~k-~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~ 641 (766)
..+..+|+..|.....+-..+.....+.++-. +..++ ..+--..+..-..++..++.++...++.+...|-.
T Consensus 58 ~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~ 132 (141)
T PRK08476 58 SEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKE 132 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455566666666555544443332222211 11111 11111223333444555566666666666555543
No 441
>PRK07261 topology modulation protein; Provisional
Probab=50.45 E-value=6.9 Score=38.76 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.0
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+-.|++|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999865
No 442
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.21 E-value=9.4 Score=45.72 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=32.7
Q ss_pred CcCEEEEeecccCCCCccccCCCCC-------C--C-----CcccchHHHHHHHHHHHHhcc
Q 004235 79 GYNATVLAYGQTGSGKTYTMGTGLR-------E--G-----FQTGLIPQVMNALFNKIETLR 126 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm~g~~~-------~--~-----~~~Giipr~~~~LF~~i~~~~ 126 (766)
-....|+-||+.|+||||..+--.. + | ..-|--...+++||.+....+
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAK 760 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccC
Confidence 3456799999999999998632110 0 1 123666778999999887654
No 443
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=50.19 E-value=14 Score=38.20 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=21.8
Q ss_pred hhhhhhhHhHHHHHhC-CcCEEEEeecccCCCCcccc
Q 004235 63 AMFGECVAPLVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 63 ~vy~~~v~plV~~~l~-G~N~tI~aYGqTGSGKTyTm 98 (766)
.+|...+..+...+-. |..-.|.-.|++|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3444444443333333 44556666699999999876
No 444
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=49.80 E-value=90 Score=27.51 Aligned_cols=13 Identities=69% Similarity=0.820 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhhh
Q 004235 647 EKELLKLKKEGRK 659 (766)
Q Consensus 647 ~kEi~qLkk~~rk 659 (766)
++|+..|+++.||
T Consensus 56 E~eL~~LrkENrK 68 (85)
T PF15188_consen 56 EKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHhhhh
Confidence 4444444444444
No 445
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=49.75 E-value=10 Score=42.26 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=21.7
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+.+.+|-+..++..++||||||...
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 345567888878888899999999874
No 446
>PRK00131 aroK shikimate kinase; Reviewed
Probab=49.67 E-value=7.5 Score=37.69 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=14.3
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+.+|.+|||||+.-
T Consensus 6 ~i~l~G~~GsGKstla 21 (175)
T PRK00131 6 NIVLIGFMGAGKSTIG 21 (175)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 6889999999999874
No 447
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=49.65 E-value=9.1 Score=42.41 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=0.0
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|+.-+|++.|+.|+|||..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
No 448
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.62 E-value=5.6e+02 Score=31.12 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 004235 592 KKQESQVELLKQKHKSDEAAKRLQAEI 618 (766)
Q Consensus 592 ~k~~e~~~l~k~k~k~e~~i~~L~~Ei 618 (766)
.+....+.+-.+..+.+..+.+++.+.
T Consensus 148 e~~~k~ae~~~lr~k~dss~s~~q~e~ 174 (716)
T KOG4593|consen 148 EKEDKLAELGTLRNKLDSSLSELQWEV 174 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666777777777776654
No 449
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=49.47 E-value=5.8e+02 Score=31.31 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.2
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
-.+-+|+.-|.+|.|||-+-
T Consensus 142 k~SQSIIVSGESGAGKTEst 161 (1259)
T KOG0163|consen 142 KLSQSIIVSGESGAGKTEST 161 (1259)
T ss_pred hhcccEEEecCCCCCcchhH
Confidence 45668999999999999763
No 450
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.42 E-value=3.1e+02 Score=28.11 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ 629 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~ 629 (766)
.-.+...++.++..|+.... .+...-.+-...+..|...|..||..+..|+
T Consensus 89 al~~k~~~e~~~~~l~~~~~---~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLD---QAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555543222 2222333344455566666666666555444
No 451
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=49.41 E-value=9.8 Score=39.14 Aligned_cols=26 Identities=42% Similarity=0.532 Sum_probs=20.0
Q ss_pred HHHHHhCC---cCEEEEeecccCCCCccc
Q 004235 72 LVDGLFQG---YNATVLAYGQTGSGKTYT 97 (766)
Q Consensus 72 lV~~~l~G---~N~tI~aYGqTGSGKTyT 97 (766)
-+|.++.| .+.+++.+|++|||||..
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 35666743 577899999999999864
No 452
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=49.41 E-value=15 Score=40.40 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.2
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|.-.|++|+|||+|+
T Consensus 114 ~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 346777799999999998
No 453
>PRK08118 topology modulation protein; Reviewed
Probab=49.23 E-value=7.4 Score=38.42 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.2
Q ss_pred EEeecccCCCCccc
Q 004235 84 VLAYGQTGSGKTYT 97 (766)
Q Consensus 84 I~aYGqTGSGKTyT 97 (766)
|+..|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999964
No 454
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.82 E-value=3.5e+02 Score=28.50 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=18.8
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 004235 611 AKRLQAEIQSI---KAQKVQLQNKIKQEAEQFRQ 641 (766)
Q Consensus 611 i~~L~~Ei~~m---K~~kV~L~kkmkee~~~~r~ 641 (766)
+..|+.+|..+ +..=+-+|.+|-++.+.|-.
T Consensus 86 l~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 86 LASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444 44446678888888888766
No 455
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.67 E-value=13 Score=41.55 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=20.6
Q ss_pred HhHHHHHhCC-cCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G-~N~tI~aYGqTGSGKTyTm 98 (766)
..+...+-.| ..-+++-||+.|+|||++.
T Consensus 26 ~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 26 TAISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred HHHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 3344444444 4567889999999999876
No 456
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=48.58 E-value=12 Score=40.40 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=13.9
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.++-||++|+|||+..
T Consensus 32 ~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLA 47 (305)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677999999999877
No 457
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=48.57 E-value=7.9 Score=40.07 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=12.3
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 458
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=48.46 E-value=12 Score=38.82 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=21.7
Q ss_pred HhHHHHHhC-C--cCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQ-G--YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~-G--~N~tI~aYGqTGSGKTyTm 98 (766)
-|-+|.++. | ...+++.+|.+|||||+-.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 345677775 4 2667888899999998765
No 459
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=48.38 E-value=16 Score=43.77 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=14.7
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
.-++.+|+||||||.++
T Consensus 159 ~hvLviapTgSGKg~g~ 175 (606)
T PRK13897 159 QHALLFAPTGSGKGVGF 175 (606)
T ss_pred ceEEEEcCCCCCcceEE
Confidence 35789999999999887
No 460
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.21 E-value=7.4 Score=44.00 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=15.4
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-.|+||+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 57788899999999998
No 461
>CHL00176 ftsH cell division protein; Validated
Probab=48.19 E-value=8.1 Score=46.51 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=15.0
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999986
No 462
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=48.19 E-value=1.5e+02 Score=28.24 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 004235 529 LRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK 591 (766)
Q Consensus 529 ~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk 591 (766)
+...|...+..++.+...|+-+..+++.+.... +.....-++..+++..+.+..+...|.
T Consensus 21 l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~---~~~~~~~i~~q~~~e~~~r~e~k~~l~ 80 (131)
T PF11068_consen 21 LLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQ---NAQQIQSIQQQFEQEKQERLEQKNQLL 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777766666666665432 112333444444444444444443333
No 463
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=48.15 E-value=12 Score=40.52 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=21.7
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+|.+.=..-+.+|.-||+=|||||+.|
T Consensus 8 la~~I~~~~~~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 8 LAEIIKNPDSDDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred HHHHHhccCCCCCeEEEEECCCCCCHHHHH
Confidence 334444332356789999999999999977
No 464
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.04 E-value=7.9 Score=43.55 Aligned_cols=17 Identities=47% Similarity=0.608 Sum_probs=14.9
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-.|++|+|||+|+
T Consensus 207 ~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 207 RIISLIGQTGVGKTTTL 223 (407)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45678899999999998
No 465
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=47.87 E-value=15 Score=40.53 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=21.7
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCccccCC
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm~g 100 (766)
.+|-.++.|.+| +....||||||..+-.
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaL 63 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFAL 63 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhH
Confidence 345667889997 5667999999998743
No 466
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=47.84 E-value=12 Score=41.78 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=29.6
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|.|+.|-+. +++ ..-|+..+.+-.-+.|+.+|.+||||||++
T Consensus 12 ~~~pf~~ivGq-----~~~----k~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ-----EEM----KLALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh-----HHH----HHHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 37899988853 333 333444444433345789999999999987
No 467
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=47.66 E-value=13 Score=41.01 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=22.0
Q ss_pred hhhh-hhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 63 AMFG-ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 63 ~vy~-~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+|+ ..+..++.++.. +.-|+-+|++|+|||...
T Consensus 47 y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred ccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 4444 223445555543 445888999999999865
No 468
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=47.54 E-value=7.4 Score=43.92 Aligned_cols=16 Identities=50% Similarity=0.764 Sum_probs=12.4
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
-++..|.||||||.+|
T Consensus 17 ~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 17 HILIIGATGSGKTQAI 32 (386)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3678899999999877
No 469
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.45 E-value=7.2 Score=42.70 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.2
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
..+|+-.|.||||||++|
T Consensus 143 ~~siii~G~t~sGKTt~l 160 (312)
T COG0630 143 RKSIIICGGTASGKTTLL 160 (312)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 335688899999999998
No 470
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=47.29 E-value=15 Score=44.37 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.4
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
+.-++++|+||||||..+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSV 241 (641)
T ss_pred CceEEEEeCCCCCccceE
Confidence 346799999999999976
No 471
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=47.28 E-value=14 Score=38.03 Aligned_cols=29 Identities=34% Similarity=0.639 Sum_probs=21.8
Q ss_pred HhHHHHHhCC-c--CEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQG-Y--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G-~--N~tI~aYGqTGSGKTyTm 98 (766)
-|=+|.++.| + ...++-||++|||||...
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3456778854 2 456789999999999875
No 472
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=47.24 E-value=6.2e+02 Score=30.96 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLKALEAQILELKKKQES 596 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e 596 (766)
..+++..|..++..|+++..+
T Consensus 239 ~~~~i~~l~~~l~~l~~~~~~ 259 (670)
T KOG0239|consen 239 IKKKIQALQQELEELKAELKE 259 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666555544
No 473
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=47.24 E-value=7.8 Score=36.88 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.9
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
+|+.+|.+|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999865
No 474
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=47.13 E-value=9.9 Score=42.13 Aligned_cols=42 Identities=24% Similarity=0.447 Sum_probs=31.2
Q ss_pred EEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 48 F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
|.|..|.+ |+.+ ..-|+-.+++..-+-|+-.|.+|+|||..+
T Consensus 1 ~pf~~ivg-----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 1 FPFTAIVG-----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCcccccc-----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 56777764 3333 556667777777777889999999999887
No 475
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=47.08 E-value=14 Score=43.42 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=19.4
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| +++..+||||||.+.
T Consensus 151 aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHHH
Confidence 4566778887 466779999999764
No 476
>CHL00181 cbbX CbbX; Provisional
Probab=47.08 E-value=7.8 Score=41.89 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.4
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999975
No 477
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.05 E-value=8.4 Score=43.94 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=15.7
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
+..|...|+||+|||+|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456788899999999999
No 478
>PF14282 FlxA: FlxA-like protein
Probab=47.05 E-value=83 Score=28.76 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004235 609 EAAKRLQAEIQSIKAQKVQLQ 629 (766)
Q Consensus 609 ~~i~~L~~Ei~~mK~~kV~L~ 629 (766)
.++..|+.+|..|.+|=.+|.
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 479
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=46.96 E-value=12 Score=44.69 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=19.5
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|..++.|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3456788998 566789999999875
No 480
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.83 E-value=21 Score=43.20 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=19.4
Q ss_pred CCcccchHHHHHHHHHHHHhccc
Q 004235 105 GFQTGLIPQVMNALFNKIETLRH 127 (766)
Q Consensus 105 ~~~~Giipr~~~~LF~~i~~~~~ 127 (766)
++.-|++.|++..|...+..+.+
T Consensus 784 GDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 784 GDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred CCccccHHHHHHHHHHHhhcccC
Confidence 45679999999999999988754
No 481
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.83 E-value=7.2e+02 Score=31.58 Aligned_cols=172 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhccCCccchh
Q 004235 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAE--------IENLAANSDGHTQ 570 (766)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~--------l~~~~~~~~~~~~ 570 (766)
+...+|.+|.......+.-+..-. .+|..|+.++..+.+..+.+... |...+...- .-.
T Consensus 178 ~~h~eL~~lr~~e~~Le~~~~~~~------------~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v-~y~ 244 (1072)
T KOG0979|consen 178 QYHIELMDLREDEKSLEDKLTTKT------------EKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWV-EYK 244 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-chH
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKEL 650 (766)
Q Consensus 571 kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi 650 (766)
+-..+|..=.++...--.++++..++...+...++.-+..+..+.++|..+..---.--.+.++--++++.....-++-.
T Consensus 245 ~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~ 324 (1072)
T KOG0979|consen 245 KHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKK 324 (1072)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 651 LKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKE 694 (766)
Q Consensus 651 ~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~ 694 (766)
.+|..-.++....+.+++ +-.+....+...|..
T Consensus 325 ~~le~lk~~~~~rq~~i~-----------~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 325 NKLESLKKAAEKRQKRIE-----------KAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhhh
No 482
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=46.70 E-value=8.5e+02 Score=32.44 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 004235 609 EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALN 671 (766)
Q Consensus 609 ~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~ 671 (766)
.++..+..++..+...--.++..+..+....+..-....+++..+.++......++..+....
T Consensus 903 ~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 903 AEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555544443345555666666666556666666666666655555555554433
No 483
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=46.67 E-value=14 Score=37.91 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=22.0
Q ss_pred HhHHHHHhC-Cc--CEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~-G~--N~tI~aYGqTGSGKTyTm 98 (766)
-|-+|.++. |+ ...+.-+|++|||||..+
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 356778775 43 446788899999999876
No 484
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.66 E-value=9.1 Score=46.74 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=15.2
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
.+|.-.|+||+|||+|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46778899999999998
No 485
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=46.65 E-value=3.9e+02 Score=28.53 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 630 NKIKQEAEQFRQWKASREKELLKLKK 655 (766)
Q Consensus 630 kkmkee~~~~r~~k~~~~kEi~qLkk 655 (766)
..|+.+..+||+.-...+.+|-+|+.
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888766666666666653
No 486
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=46.62 E-value=9.2 Score=35.13 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=14.1
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
-.+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34567899999999987
No 487
>PRK06696 uridine kinase; Validated
Probab=46.52 E-value=17 Score=37.56 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=20.6
Q ss_pred hHhHHHHHh---CCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLF---QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l---~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..|.+.++ .|....|...|.+|||||+.-
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 344445554 355666777799999999865
No 488
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=46.51 E-value=8.6 Score=38.21 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=13.0
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+.+|++|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999754
No 489
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=46.47 E-value=10 Score=44.58 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.3
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
-..+-.||+|+|||||+
T Consensus 202 ~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTL 218 (649)
T ss_pred CceEeeCCCCCCceeeH
Confidence 34566799999999998
No 490
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=46.39 E-value=4e+02 Score=29.48 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L 614 (766)
..|..+-+++..+..+|..+...|..... .|+-..++-... ..++. +- .+. =++-..+
T Consensus 195 ~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~-~DDI~~~ll~~~----~~~e~--------------lF--~~e-L~kf~~~ 252 (339)
T cd09238 195 GTLRSNLEELEALGNERAGIEDMMKALKR-NDNILAKVMATT----GSYDA--------------LF--KEE-LKKYDSV 252 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCcHHHHHHhh----hhhHH--------------HH--HHH-HHHHhhH
Confidence 56778888999999999999999877553 455555653211 11111 00 001 1234556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 615 QAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (766)
Q Consensus 615 ~~Ei~~mK~~kV~L~kkmkee~~~~r~ 641 (766)
...|..-....-.|+++++.....|.+
T Consensus 253 ~~~v~~~~~~Q~~ll~~i~~~n~~f~~ 279 (339)
T cd09238 253 REAVSKNISSQDDLLSRLRALNEKFSQ 279 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777778889999998888875
No 491
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=46.24 E-value=8.1 Score=44.28 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=21.7
Q ss_pred HHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHH
Q 004235 75 GLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQV 114 (766)
Q Consensus 75 ~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~ 114 (766)
.+..|-| +|.||+.|||||.... --+||+|-.
T Consensus 194 AAAGgHn--Ll~~GpPGtGKTmla~------Rl~~lLPpl 225 (490)
T COG0606 194 AAAGGHN--LLLVGPPGTGKTMLAS------RLPGLLPPL 225 (490)
T ss_pred HHhcCCc--EEEecCCCCchHHhhh------hhcccCCCC
Confidence 3444555 5789999999998862 235776643
No 492
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=45.96 E-value=12 Score=43.43 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=20.3
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+..+++|.|..+ .++||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 45677889998654 569999999765
No 493
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.94 E-value=69 Score=36.93 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004235 575 GHTLKLKALEAQILELKKKQ 594 (766)
Q Consensus 575 ~~~~kl~~Le~el~~Lk~k~ 594 (766)
+++.||++|+.++..|+.++
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888887765
No 494
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=45.93 E-value=8.8 Score=37.86 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+..|++|||||+++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999987
No 495
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=45.91 E-value=2.7e+02 Score=26.36 Aligned_cols=97 Identities=23% Similarity=0.358 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004235 581 KALEAQILELKKKQESQVELLK-QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRK 659 (766)
Q Consensus 581 ~~Le~el~~Lk~k~~e~~~l~k-~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk 659 (766)
..++.++..++.....+..+.+ .+.+.+..+..--..| +-+.++|++....+ .+|.+|+.+-..
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~--------~~L~~lr~e~~~~~-------~~~~~l~~~~~~ 84 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDI--------KELQQLREELQELQ-------QEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3344444444444444444443 4444454444433333 33444555555444 355556655555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 660 NEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKEL 695 (766)
Q Consensus 660 ~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~ 695 (766)
....+...+..-.-|+..|....++ +.+|+.++
T Consensus 85 a~~~l~~~e~sw~~qk~~le~e~~~---~~~r~~dL 117 (132)
T PF07926_consen 85 AKAELEESEASWEEQKEQLEKELSE---LEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHH
Confidence 5566666666666666666655444 34455443
No 496
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=45.89 E-value=5.6e+02 Score=30.10 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 004235 501 DKELNELNKRLEQ 513 (766)
Q Consensus 501 ~~EL~eLnk~Le~ 513 (766)
+.|+..++.+|+.
T Consensus 122 ~~El~~l~~~l~~ 134 (511)
T PF09787_consen 122 DQELRRLRRQLEE 134 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 497
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=45.86 E-value=8.3 Score=41.57 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
-|+-+|++|||||+.-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999865
No 498
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=45.67 E-value=8.2 Score=45.00 Aligned_cols=15 Identities=47% Similarity=0.667 Sum_probs=0.0
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+-||++|+|||+..
T Consensus 91 iLL~GppGtGKT~la 105 (495)
T TIGR01241 91 VLLVGPPGTGKTLLA 105 (495)
T ss_pred EEEECCCCCCHHHHH
No 499
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=45.55 E-value=52 Score=41.95 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLK 602 (766)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k 602 (766)
+++.+..|+.++..+++|.+++...|.+-.=... --..+.+..+.||.+++.++..|++...+..+|+|
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~k-Ap~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~~~ 995 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDK-VPEDVRKLNDEKIDELNEEIKQLEQAIEELKSLLK 995 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 500
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=45.46 E-value=8.6 Score=47.17 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=0.0
Q ss_pred EEcceeeCCCCCchhhhhhhhhHh-----HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 48 FTFDHVYGNGGSPSSAMFGECVAP-----LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 48 F~FD~Vf~~~~s~q~~vy~~~v~p-----lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++||.|-+.+.. -..+.+.+..| +...+--.....|+-||++|||||+.+
T Consensus 175 ~~~~di~G~~~~-~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 175 VTYEDIGGLKEA-KEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCHHHhcCHHHH-HHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Done!