Query 004235
Match_columns 766
No_of_seqs 431 out of 1911
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 8.2E-95 2.8E-99 792.3 27.7 348 6-391 9-359 (365)
2 3b6u_A Kinesin-like protein KI 100.0 2.6E-94 8.8E-99 788.6 27.2 345 5-384 18-371 (372)
3 2vvg_A Kinesin-2; motor protei 100.0 1.7E-93 6E-98 777.8 27.9 332 7-379 3-348 (350)
4 1goj_A Kinesin, kinesin heavy 100.0 2.9E-93 9.9E-98 778.1 27.9 340 1-381 1-345 (355)
5 3bfn_A Kinesin-like protein KI 100.0 5.7E-93 2E-97 780.2 26.4 342 3-386 16-367 (388)
6 3cob_A Kinesin heavy chain-lik 100.0 1.8E-92 6.3E-97 774.0 29.6 346 8-396 5-355 (369)
7 1t5c_A CENP-E protein, centrom 100.0 3.5E-92 1.2E-96 767.9 31.0 338 6-379 2-341 (349)
8 1bg2_A Kinesin; motor protein, 100.0 5.9E-92 2E-96 759.9 26.9 321 6-366 5-325 (325)
9 1x88_A Kinesin-like protein KI 100.0 4.4E-92 1.5E-96 770.6 24.5 336 5-375 5-359 (359)
10 2owm_A Nckin3-434, related to 100.0 4E-91 1.4E-95 780.1 31.3 346 7-381 37-429 (443)
11 4a14_A Kinesin, kinesin-like p 100.0 2.5E-91 8.7E-96 761.7 28.3 334 4-364 7-344 (344)
12 2zfi_A Kinesin-like protein KI 100.0 3.2E-91 1.1E-95 765.6 27.5 338 8-374 4-362 (366)
13 2wbe_C Bipolar kinesin KRP-130 100.0 6.7E-91 2.3E-95 764.2 25.2 334 7-377 22-372 (373)
14 3lre_A Kinesin-like protein KI 100.0 2E-90 6.9E-95 756.4 28.4 323 7-366 9-355 (355)
15 2h58_A Kinesin-like protein KI 100.0 3.4E-88 1.1E-92 732.1 29.3 321 7-367 3-329 (330)
16 3gbj_A KIF13B protein; kinesin 100.0 4.4E-88 1.5E-92 737.7 27.6 329 8-366 1-350 (354)
17 1ry6_A Internal kinesin; kines 100.0 2.6E-88 8.8E-93 739.7 24.8 322 9-374 1-339 (360)
18 1v8k_A Kinesin-like protein KI 100.0 6.9E-88 2.4E-92 743.8 26.7 321 5-371 68-407 (410)
19 2heh_A KIF2C protein; kinesin, 100.0 8.1E-88 2.8E-92 739.1 25.8 319 5-369 48-385 (387)
20 3t0q_A AGR253WP; kinesin, alph 100.0 3.3E-87 1.1E-91 730.1 28.7 332 8-370 5-348 (349)
21 3nwn_A Kinesin-like protein KI 100.0 1.2E-87 4.2E-92 734.1 24.0 327 7-366 23-359 (359)
22 2rep_A Kinesin-like protein KI 100.0 5E-87 1.7E-91 732.7 27.1 324 7-366 21-376 (376)
23 1f9v_A Kinesin-like protein KA 100.0 8.8E-87 3E-91 725.6 26.0 328 8-370 3-345 (347)
24 2nr8_A Kinesin-like protein KI 100.0 1.2E-86 4E-91 726.1 24.5 323 6-366 21-358 (358)
25 3dc4_A Kinesin-like protein NO 100.0 1.3E-86 4.3E-91 722.3 24.0 315 5-371 19-340 (344)
26 4etp_A Kinesin-like protein KA 100.0 3E-85 1E-89 726.8 27.3 330 8-370 59-401 (403)
27 3u06_A Protein claret segregat 100.0 7.5E-85 2.6E-89 723.4 26.3 316 8-370 59-386 (412)
28 4h1g_A Maltose binding protein 100.0 1.2E-77 4.2E-82 715.8 29.1 319 8-367 374-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 5.6E-32 1.9E-36 240.4 6.2 98 287-388 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 100.0 4.5E-30 1.5E-34 236.0 10.9 87 291-381 1-87 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 2.1E-25 7.1E-30 229.8 4.2 260 8-370 24-293 (298)
32 1i84_S Smooth muscle myosin he 97.2 0.00091 3.1E-08 83.9 10.5 21 78-98 166-186 (1184)
33 3na7_A HP0958; flagellar bioge 96.1 0.99 3.4E-05 46.4 23.2 60 577-637 59-118 (256)
34 2dfs_A Myosin-5A; myosin-V, in 96.1 0.13 4.3E-06 63.7 18.8 92 583-674 958-1049(1080)
35 1i84_S Smooth muscle myosin he 96.1 0.01 3.4E-07 74.5 8.9 47 378-429 856-902 (1184)
36 2dfs_A Myosin-5A; myosin-V, in 95.2 0.48 1.7E-05 58.5 19.0 21 78-98 153-173 (1080)
37 2v71_A Nuclear distribution pr 94.7 3.5 0.00012 40.2 22.1 91 531-632 13-111 (189)
38 2v71_A Nuclear distribution pr 94.0 1.1 3.8E-05 43.8 14.5 25 644-668 91-115 (189)
39 3oja_B Anopheles plasmodium-re 93.8 0.6 2.1E-05 53.6 14.8 71 628-698 510-580 (597)
40 3na7_A HP0958; flagellar bioge 93.3 2.7 9.1E-05 43.2 17.1 48 607-654 109-156 (256)
41 3ec2_A DNA replication protein 93.3 0.018 6.2E-07 55.5 0.6 50 47-98 6-55 (180)
42 3ol1_A Vimentin; structural ge 93.0 1.9 6.6E-05 39.0 13.6 99 527-632 12-113 (119)
43 2w58_A DNAI, primosome compone 91.2 0.058 2E-06 52.7 1.3 50 47-98 21-71 (202)
44 2qgz_A Helicase loader, putati 90.5 0.075 2.6E-06 56.3 1.4 50 47-98 120-169 (308)
45 3o0z_A RHO-associated protein 90.1 13 0.00045 35.4 20.1 64 498-561 9-74 (168)
46 3oja_B Anopheles plasmodium-re 89.3 1.3 4.6E-05 50.7 10.8 36 604-639 525-560 (597)
47 2fxo_A Myosin heavy chain, car 89.1 8.8 0.0003 35.0 14.1 41 581-621 79-123 (129)
48 3t15_A Ribulose bisphosphate c 88.8 0.15 5.3E-06 53.4 2.2 48 50-98 2-53 (293)
49 3s4r_A Vimentin; alpha-helix, 88.4 7.5 0.00026 33.5 12.2 72 532-623 20-91 (93)
50 4etp_B Spindle POLE BODY-assoc 88.3 3 0.0001 43.8 11.3 90 45-153 91-184 (333)
51 1jbk_A CLPB protein; beta barr 88.1 0.22 7.4E-06 47.1 2.6 30 69-98 31-60 (195)
52 3oja_A Leucine-rich immune mol 87.8 6.6 0.00023 43.8 15.0 56 643-698 423-478 (487)
53 4b4t_M 26S protease regulatory 87.6 0.33 1.1E-05 53.9 4.0 79 46-125 176-273 (434)
54 2p65_A Hypothetical protein PF 86.8 0.25 8.7E-06 46.6 2.2 30 69-98 31-60 (187)
55 3iox_A AGI/II, PA; alpha helix 86.3 18 0.00061 40.1 16.5 103 531-655 5-108 (497)
56 3oja_A Leucine-rich immune mol 85.9 31 0.0011 38.2 19.3 31 626-656 434-464 (487)
57 4b4t_K 26S protease regulatory 85.6 0.27 9.2E-06 54.6 1.9 78 47-125 168-264 (428)
58 2ocy_A RAB guanine nucleotide 85.5 24 0.00084 33.1 17.2 26 495-520 13-38 (154)
59 3te6_A Regulatory protein SIR3 85.0 0.28 9.5E-06 52.3 1.6 27 72-98 36-62 (318)
60 1g8p_A Magnesium-chelatase 38 84.1 0.29 1E-05 51.8 1.3 44 46-98 19-62 (350)
61 3vkg_A Dynein heavy chain, cyt 83.9 46 0.0016 45.7 22.0 26 72-98 1296-1321(3245)
62 2bjv_A PSP operon transcriptio 83.8 0.28 9.7E-06 50.0 1.0 45 47-98 2-46 (265)
63 1l8q_A Chromosomal replication 83.5 0.38 1.3E-05 50.7 1.8 48 47-98 7-54 (324)
64 3h4m_A Proteasome-activating n 83.3 0.32 1.1E-05 50.1 1.1 52 46-98 12-68 (285)
65 3uk6_A RUVB-like 2; hexameric 83.2 0.53 1.8E-05 50.3 2.9 46 47-98 40-87 (368)
66 3cf0_A Transitional endoplasmi 83.2 0.33 1.1E-05 50.9 1.2 51 47-98 11-66 (301)
67 2r62_A Cell division protease 83.0 0.33 1.1E-05 49.5 1.1 50 47-98 7-61 (268)
68 3b9p_A CG5977-PA, isoform A; A 82.6 0.27 9.3E-06 51.0 0.3 52 46-98 16-71 (297)
69 3bos_A Putative DNA replicatio 81.8 0.63 2.1E-05 45.9 2.6 45 48-98 25-69 (242)
70 1ixz_A ATP-dependent metallopr 81.7 0.39 1.3E-05 48.7 1.0 15 84-98 52-66 (254)
71 1qde_A EIF4A, translation init 81.4 0.59 2E-05 46.1 2.2 25 72-98 44-68 (224)
72 4b4t_J 26S protease regulatory 81.3 0.9 3.1E-05 49.9 3.8 78 47-125 144-240 (405)
73 1vec_A ATP-dependent RNA helic 81.2 0.68 2.3E-05 44.9 2.6 25 72-98 33-57 (206)
74 4b4t_I 26S protease regulatory 81.2 3.3 0.00011 45.8 8.2 78 47-125 178-274 (437)
75 1p9r_A General secretion pathw 80.8 0.67 2.3E-05 51.2 2.6 29 70-98 156-184 (418)
76 3vkg_A Dynein heavy chain, cyt 80.8 1.4E+02 0.0049 41.1 24.8 20 79-98 904-923 (3245)
77 4b4t_L 26S protease subunit RP 80.6 0.78 2.7E-05 51.0 3.0 78 47-125 177-273 (437)
78 2eqb_B RAB guanine nucleotide 80.4 28 0.00096 30.1 12.2 56 535-598 12-67 (97)
79 2gxq_A Heat resistant RNA depe 80.2 0.69 2.4E-05 44.8 2.2 25 72-98 31-55 (207)
80 2chg_A Replication factor C sm 79.6 0.71 2.4E-05 44.5 2.1 22 77-98 34-55 (226)
81 1d2n_A N-ethylmaleimide-sensit 79.3 1 3.5E-05 46.1 3.2 21 78-98 61-81 (272)
82 1iy2_A ATP-dependent metallopr 78.8 0.37 1.3E-05 49.7 -0.3 16 83-98 75-90 (278)
83 3bor_A Human initiation factor 78.6 0.56 1.9E-05 47.0 1.0 25 72-98 60-84 (237)
84 3jvv_A Twitching mobility prot 78.6 0.74 2.5E-05 49.8 2.0 29 70-98 112-140 (356)
85 3dkp_A Probable ATP-dependent 77.9 0.88 3E-05 45.6 2.2 25 72-98 59-83 (245)
86 3d8b_A Fidgetin-like protein 1 77.2 0.48 1.6E-05 51.0 -0.0 51 47-98 80-134 (357)
87 2c9o_A RUVB-like 1; hexameric 77.1 1.1 3.9E-05 49.7 3.0 47 46-98 32-80 (456)
88 4b4t_H 26S protease regulatory 77.0 0.83 2.9E-05 51.0 1.9 78 47-125 205-301 (467)
89 3hnw_A Uncharacterized protein 77.0 4.2 0.00014 37.8 6.3 25 536-560 76-100 (138)
90 2kjq_A DNAA-related protein; s 77.0 0.8 2.7E-05 42.8 1.5 17 82-98 37-53 (149)
91 1xwi_A SKD1 protein; VPS4B, AA 76.7 0.6 2.1E-05 49.5 0.6 51 47-98 8-62 (322)
92 3a7p_A Autophagy protein 16; c 76.4 37 0.0013 31.7 12.4 29 664-692 119-148 (152)
93 2eyu_A Twitching motility prot 76.3 1 3.5E-05 46.4 2.2 27 72-98 16-42 (261)
94 2pl3_A Probable ATP-dependent 76.3 1 3.6E-05 44.7 2.2 25 72-98 55-79 (236)
95 2z4s_A Chromosomal replication 76.1 0.86 2.9E-05 50.6 1.7 48 46-98 100-147 (440)
96 3tnu_B Keratin, type II cytosk 75.8 23 0.0008 32.1 11.1 59 608-666 42-100 (129)
97 3i00_A HIP-I, huntingtin-inter 75.6 17 0.00057 32.9 9.7 69 543-625 16-84 (120)
98 3b6e_A Interferon-induced heli 75.4 0.66 2.3E-05 45.1 0.4 24 73-98 42-65 (216)
99 1sxj_D Activator 1 41 kDa subu 75.4 0.99 3.4E-05 47.6 1.9 29 70-98 47-75 (353)
100 1t6n_A Probable ATP-dependent 75.3 1.1 3.8E-05 44.0 2.1 25 72-98 44-68 (220)
101 1f5n_A Interferon-induced guan 75.0 45 0.0015 38.3 15.6 22 77-98 34-55 (592)
102 3ly5_A ATP-dependent RNA helic 73.8 0.9 3.1E-05 46.4 1.0 25 72-98 84-108 (262)
103 3iuy_A Probable ATP-dependent 73.7 1.3 4.5E-05 43.7 2.2 25 72-98 50-74 (228)
104 1wrb_A DJVLGB; RNA helicase, D 73.5 1.4 4.6E-05 44.5 2.2 25 72-98 53-77 (253)
105 2v1u_A Cell division control p 73.4 0.8 2.7E-05 48.8 0.5 20 79-98 42-61 (387)
106 3swk_A Vimentin; cytoskeleton, 73.2 10 0.00036 32.1 7.3 82 538-623 3-84 (86)
107 3tnu_A Keratin, type I cytoske 73.2 54 0.0019 29.7 12.9 21 613-633 49-69 (131)
108 3vfd_A Spastin; ATPase, microt 72.7 0.72 2.5E-05 50.1 -0.1 52 46-98 110-165 (389)
109 1f5n_A Interferon-induced guan 72.4 60 0.002 37.2 15.8 26 578-603 494-519 (592)
110 2v66_B Nuclear distribution pr 72.2 25 0.00084 31.3 9.7 26 607-632 33-58 (111)
111 3fmo_B ATP-dependent RNA helic 72.0 1.4 4.7E-05 46.1 1.9 27 72-98 122-148 (300)
112 3syl_A Protein CBBX; photosynt 71.9 1.7 5.7E-05 45.1 2.5 20 79-98 65-84 (309)
113 3fe2_A Probable ATP-dependent 71.8 1.3 4.6E-05 44.3 1.7 25 72-98 59-83 (242)
114 2oxc_A Probable ATP-dependent 71.8 1.6 5.4E-05 43.4 2.2 25 72-98 54-78 (230)
115 3llm_A ATP-dependent RNA helic 71.6 1.4 4.8E-05 44.1 1.8 26 71-98 68-93 (235)
116 1u0j_A DNA replication protein 71.3 1.6 5.4E-05 45.2 2.1 29 70-98 90-121 (267)
117 1fnn_A CDC6P, cell division co 71.2 2 6.7E-05 45.8 3.0 29 70-98 30-61 (389)
118 3ber_A Probable ATP-dependent 71.0 1.7 5.7E-05 44.0 2.2 25 72-98 73-97 (249)
119 3eiq_A Eukaryotic initiation f 70.7 1.8 6.2E-05 46.5 2.6 26 71-98 69-94 (414)
120 1go4_E MAD1 (mitotic arrest de 70.3 24 0.00081 30.8 9.0 27 535-561 19-45 (100)
121 1q0u_A Bstdead; DEAD protein, 70.2 1.1 3.9E-05 44.0 0.7 24 73-98 35-58 (219)
122 3eie_A Vacuolar protein sortin 70.1 1.2 3.9E-05 47.1 0.8 52 46-98 13-68 (322)
123 1c4o_A DNA nucleotide excision 70.1 4.1 0.00014 47.6 5.6 88 48-142 2-93 (664)
124 1tue_A Replication protein E1; 70.0 1.2 4.1E-05 44.5 0.8 26 73-98 48-75 (212)
125 2ewv_A Twitching motility prot 69.9 1.4 4.9E-05 47.7 1.5 28 71-98 126-153 (372)
126 3co5_A Putative two-component 69.6 2.3 7.9E-05 39.0 2.7 18 81-98 27-44 (143)
127 2x8a_A Nuclear valosin-contain 69.5 0.91 3.1E-05 47.0 -0.2 51 47-98 6-61 (274)
128 3iox_A AGI/II, PA; alpha helix 69.2 72 0.0025 35.4 14.6 55 528-593 27-81 (497)
129 3u61_B DNA polymerase accessor 69.1 0.98 3.4E-05 47.4 -0.0 18 81-98 48-65 (324)
130 3tnu_B Keratin, type II cytosk 68.8 67 0.0023 29.0 13.8 17 638-654 107-123 (129)
131 2oap_1 GSPE-2, type II secreti 68.8 2 6.8E-05 48.7 2.4 20 77-98 258-277 (511)
132 2qp9_X Vacuolar protein sortin 68.6 1.1 3.9E-05 48.0 0.4 51 47-98 47-101 (355)
133 2v66_B Nuclear distribution pr 68.5 64 0.0022 28.6 16.5 41 631-671 25-65 (111)
134 3ghg_A Fibrinogen alpha chain; 68.4 44 0.0015 37.2 12.7 21 582-602 114-134 (562)
135 1gvn_B Zeta; postsegregational 68.4 3.4 0.00012 43.0 3.9 33 66-98 13-50 (287)
136 2qz4_A Paraplegin; AAA+, SPG7, 68.2 1.4 4.8E-05 44.3 0.9 19 80-98 38-56 (262)
137 3fmp_B ATP-dependent RNA helic 68.1 2 7E-05 47.6 2.3 26 72-97 122-147 (479)
138 3hnw_A Uncharacterized protein 67.4 70 0.0024 29.4 12.2 27 606-632 107-133 (138)
139 4fcw_A Chaperone protein CLPB; 67.0 1.9 6.6E-05 44.6 1.7 18 81-98 47-64 (311)
140 1sxj_C Activator 1 40 kDa subu 66.9 2.1 7.3E-05 45.2 2.1 29 70-98 35-63 (340)
141 2zan_A Vacuolar protein sortin 66.8 1.2 3.9E-05 49.6 -0.0 52 46-98 129-184 (444)
142 2qby_A CDC6 homolog 1, cell di 66.3 1.5 5.1E-05 46.5 0.7 20 79-98 43-62 (386)
143 2qby_B CDC6 homolog 3, cell di 66.2 2 6.9E-05 45.8 1.7 29 70-98 33-62 (384)
144 3nmd_A CGMP dependent protein 66.2 13 0.00043 30.5 6.0 21 534-554 46-66 (72)
145 1njg_A DNA polymerase III subu 66.0 2.2 7.6E-05 41.4 1.9 17 82-98 46-62 (250)
146 2j0s_A ATP-dependent RNA helic 65.9 2.3 7.8E-05 45.8 2.1 25 72-98 67-91 (410)
147 3n70_A Transport activator; si 65.7 1.6 5.4E-05 40.2 0.7 20 79-98 22-41 (145)
148 1ofh_A ATP-dependent HSL prote 65.3 2.1 7.3E-05 44.0 1.6 18 81-98 50-67 (310)
149 3hu3_A Transitional endoplasmi 65.1 2 6.7E-05 48.5 1.4 20 79-98 236-255 (489)
150 2fz4_A DNA repair protein RAD2 65.1 2.3 8E-05 42.7 1.8 24 73-98 102-125 (237)
151 3tnu_A Keratin, type I cytoske 64.9 82 0.0028 28.5 13.7 80 575-654 42-125 (131)
152 3fht_A ATP-dependent RNA helic 64.8 2.3 8E-05 45.5 1.9 27 72-98 55-81 (412)
153 1iqp_A RFCS; clamp loader, ext 64.3 2.6 8.7E-05 43.7 2.0 21 78-98 43-63 (327)
154 2z0m_A 337AA long hypothetical 64.2 2.6 9E-05 43.6 2.1 24 73-98 25-48 (337)
155 3h1t_A Type I site-specific re 64.1 3 0.0001 47.7 2.7 28 70-98 188-215 (590)
156 3pey_A ATP-dependent RNA helic 63.9 2.4 8.1E-05 45.0 1.7 27 72-98 35-61 (395)
157 2k48_A Nucleoprotein; viral pr 63.8 33 0.0011 29.9 8.4 60 537-596 37-100 (107)
158 1lv7_A FTSH; alpha/beta domain 63.6 1.9 6.3E-05 43.6 0.8 18 81-98 45-62 (257)
159 1w5s_A Origin recognition comp 62.9 3.6 0.00012 44.2 3.0 29 70-98 35-69 (412)
160 3u1c_A Tropomyosin alpha-1 cha 62.8 76 0.0026 27.5 12.8 52 534-593 43-94 (101)
161 1s2m_A Putative ATP-dependent 62.5 2.6 9E-05 45.1 1.8 25 72-98 51-75 (400)
162 2r44_A Uncharacterized protein 62.2 2.1 7.2E-05 45.0 0.9 26 71-98 38-63 (331)
163 2i4i_A ATP-dependent RNA helic 61.8 3 0.0001 44.8 2.1 24 73-98 46-69 (417)
164 2chq_A Replication factor C sm 61.1 2.4 8.1E-05 43.8 1.1 21 78-98 35-55 (319)
165 1n0w_A DNA repair protein RAD5 60.8 3.1 0.00011 41.1 1.8 29 70-98 10-41 (243)
166 2p5t_B PEZT; postsegregational 60.5 5.2 0.00018 40.4 3.5 34 65-98 11-49 (253)
167 2eqb_B RAB guanine nucleotide 60.4 72 0.0025 27.6 10.0 54 536-589 41-94 (97)
168 4b3f_X DNA-binding protein smu 60.3 3.1 0.00011 48.4 2.0 26 72-98 197-222 (646)
169 2efr_A General control protein 59.4 1.2E+02 0.004 28.5 20.7 95 535-633 35-129 (155)
170 3ghg_A Fibrinogen alpha chain; 59.3 43 0.0015 37.3 10.5 16 607-622 115-130 (562)
171 3oiy_A Reverse gyrase helicase 59.0 3.4 0.00012 44.7 1.9 25 72-98 29-53 (414)
172 2ic6_A Nucleocapsid protein; h 58.1 47 0.0016 27.5 8.0 60 537-596 7-70 (78)
173 3u1c_A Tropomyosin alpha-1 cha 57.9 93 0.0032 26.9 10.9 15 605-619 82-96 (101)
174 4fi5_A Nucleoprotein; structur 57.9 39 0.0013 29.8 8.0 62 538-599 25-90 (113)
175 1xti_A Probable ATP-dependent 57.6 4 0.00014 43.3 2.1 25 72-98 38-62 (391)
176 3c8u_A Fructokinase; YP_612366 57.6 5.4 0.00019 38.9 2.9 30 69-98 8-39 (208)
177 2w0m_A SSO2452; RECA, SSPF, un 57.5 3.9 0.00013 39.9 1.8 28 71-98 10-40 (235)
178 3fho_A ATP-dependent RNA helic 57.4 3.7 0.00013 46.1 1.9 27 72-98 149-175 (508)
179 1x79_B RAB GTPase binding effe 57.2 50 0.0017 29.3 8.7 20 539-558 17-36 (112)
180 1rif_A DAR protein, DNA helica 57.2 2.7 9.2E-05 43.1 0.6 24 73-98 122-145 (282)
181 2cvh_A DNA repair and recombin 56.9 4 0.00014 39.6 1.9 28 71-98 7-37 (220)
182 3s4r_A Vimentin; alpha-helix, 56.9 27 0.00094 29.9 6.9 36 526-561 47-82 (93)
183 3i00_A HIP-I, huntingtin-inter 56.8 38 0.0013 30.5 8.1 24 530-553 42-65 (120)
184 1rz3_A Hypothetical protein rb 56.8 5.7 0.0002 38.5 2.9 30 69-98 7-39 (201)
185 1e9r_A Conjugal transfer prote 56.7 2.8 9.4E-05 46.1 0.7 18 81-98 53-70 (437)
186 3i5x_A ATP-dependent RNA helic 56.6 4.9 0.00017 45.4 2.8 27 72-98 102-128 (563)
187 3pxg_A Negative regulator of g 56.0 5.5 0.00019 44.4 3.0 29 70-98 190-218 (468)
188 3pfi_A Holliday junction ATP-d 55.9 4.1 0.00014 42.7 1.8 44 49-98 27-72 (338)
189 4a74_A DNA repair and recombin 55.8 5.1 0.00018 39.1 2.4 28 71-98 12-42 (231)
190 3mq9_A Bone marrow stromal ant 55.8 2.1E+02 0.0073 31.1 16.0 23 62-86 31-53 (471)
191 2db3_A ATP-dependent RNA helic 55.7 4.4 0.00015 44.5 2.1 25 72-98 86-110 (434)
192 2v1x_A ATP-dependent DNA helic 55.6 5.5 0.00019 45.9 2.9 26 71-98 51-76 (591)
193 1sxj_B Activator 1 37 kDa subu 55.3 4.5 0.00015 41.7 2.0 24 75-98 36-59 (323)
194 3mq7_A Bone marrow stromal ant 55.0 1.1E+02 0.0039 27.1 12.6 19 577-595 70-88 (121)
195 1fuu_A Yeast initiation factor 54.9 2.9 9.8E-05 44.5 0.4 25 72-98 51-75 (394)
196 4gp7_A Metallophosphoesterase; 54.9 3.3 0.00011 39.3 0.8 16 83-98 11-26 (171)
197 1hv8_A Putative ATP-dependent 54.8 4.6 0.00016 42.2 2.0 25 73-98 37-61 (367)
198 1in4_A RUVB, holliday junction 54.7 3 0.0001 44.1 0.5 16 83-98 53-68 (334)
199 2ce7_A Cell division protein F 54.5 2.4 8.1E-05 47.6 -0.3 17 82-98 50-66 (476)
200 3b85_A Phosphate starvation-in 54.2 5 0.00017 39.6 2.0 26 71-98 14-39 (208)
201 2jee_A YIIU; FTSZ, septum, coi 54.1 72 0.0025 26.6 8.6 33 405-437 41-73 (81)
202 1hqc_A RUVB; extended AAA-ATPa 54.0 4.4 0.00015 42.0 1.7 46 47-98 8-55 (324)
203 3upu_A ATP-dependent DNA helic 53.5 6 0.0002 43.8 2.7 34 60-98 29-62 (459)
204 3pvs_A Replication-associated 53.5 4.1 0.00014 45.3 1.4 29 70-98 39-67 (447)
205 2jlq_A Serine protease subunit 53.5 4.3 0.00015 44.9 1.6 25 73-98 12-36 (451)
206 2dhr_A FTSH; AAA+ protein, hex 53.4 2.1 7.1E-05 48.4 -1.1 47 46-98 26-81 (499)
207 4a2p_A RIG-I, retinoic acid in 53.2 5.2 0.00018 44.7 2.2 25 72-98 15-39 (556)
208 2qag_C Septin-7; cell cycle, c 53.0 3.8 0.00013 45.1 1.0 23 76-98 26-48 (418)
209 3o0z_A RHO-associated protein 52.5 1.6E+02 0.0054 28.0 16.7 48 501-560 33-80 (168)
210 2ocy_A RAB guanine nucleotide 52.3 1.5E+02 0.0052 27.7 18.8 63 602-667 72-134 (154)
211 1ojl_A Transcriptional regulat 51.6 5 0.00017 42.0 1.6 26 72-98 17-42 (304)
212 1deq_A Fibrinogen (alpha chain 51.4 1.8E+02 0.0062 31.1 13.3 27 671-697 118-144 (390)
213 3mq9_A Bone marrow stromal ant 51.4 1.4E+02 0.0048 32.6 13.6 6 141-146 131-136 (471)
214 1sxj_E Activator 1 40 kDa subu 51.3 4.1 0.00014 42.9 0.9 15 84-98 39-53 (354)
215 3tbk_A RIG-I helicase domain; 51.3 5.8 0.0002 44.2 2.2 24 73-98 13-36 (555)
216 3s9g_A Protein hexim1; cyclin 51.3 81 0.0028 27.1 8.6 54 502-560 37-90 (104)
217 1w36_D RECD, exodeoxyribonucle 51.2 5 0.00017 46.3 1.7 18 81-98 164-181 (608)
218 2ic9_A Nucleocapsid protein; h 51.0 77 0.0026 27.2 8.5 62 537-598 7-72 (96)
219 2qnr_A Septin-2, protein NEDD5 50.9 4.3 0.00015 42.4 1.0 23 76-98 13-35 (301)
220 3lw7_A Adenylate kinase relate 50.6 4.5 0.00015 37.3 1.0 16 83-98 3-18 (179)
221 1kgd_A CASK, peripheral plasma 50.3 4.3 0.00015 38.6 0.8 16 83-98 7-22 (180)
222 3lay_A Zinc resistance-associa 50.2 53 0.0018 31.5 8.5 52 571-625 78-129 (175)
223 2dr3_A UPF0273 protein PH0284; 50.1 5 0.00017 39.6 1.2 26 73-98 12-40 (247)
224 2yy0_A C-MYC-binding protein; 50.1 23 0.0008 27.1 4.8 35 401-435 15-49 (53)
225 3tr0_A Guanylate kinase, GMP k 50.0 4.3 0.00015 39.0 0.8 16 83-98 9-24 (205)
226 2e7s_A RAB guanine nucleotide 49.9 44 0.0015 30.6 7.4 16 543-558 68-83 (135)
227 3hws_A ATP-dependent CLP prote 49.9 3.9 0.00013 43.7 0.4 18 81-98 51-68 (363)
228 1qvr_A CLPB protein; coiled co 49.9 4.5 0.00015 48.7 1.0 30 69-98 179-208 (854)
229 2fwr_A DNA repair protein RAD2 49.9 5.8 0.0002 43.7 1.8 25 72-98 101-125 (472)
230 3tau_A Guanylate kinase, GMP k 49.6 4.4 0.00015 39.6 0.8 16 83-98 10-25 (208)
231 1jr3_A DNA polymerase III subu 49.5 6.1 0.00021 41.7 1.9 19 80-98 37-55 (373)
232 3iv1_A Tumor susceptibility ge 49.3 1.1E+02 0.0038 25.3 9.2 52 571-622 11-66 (78)
233 1um8_A ATP-dependent CLP prote 49.3 4.3 0.00015 43.5 0.7 18 81-98 72-89 (376)
234 3sqw_A ATP-dependent RNA helic 49.1 7.6 0.00026 44.2 2.8 27 72-98 51-77 (579)
235 3bas_A Myosin heavy chain, str 49.0 1.2E+02 0.0041 25.5 10.7 13 601-613 69-81 (89)
236 3sop_A Neuronal-specific septi 48.8 4.7 0.00016 41.5 0.8 19 80-98 1-19 (270)
237 3nbx_X ATPase RAVA; AAA+ ATPas 48.5 6.2 0.00021 44.5 1.9 27 70-98 32-58 (500)
238 3e70_C DPA, signal recognition 48.4 9.8 0.00033 40.4 3.3 18 81-98 129-146 (328)
239 4gl2_A Interferon-induced heli 48.2 6.6 0.00023 45.6 2.1 25 72-98 15-39 (699)
240 2gk6_A Regulator of nonsense t 48.2 6.1 0.00021 45.8 1.8 25 72-98 188-212 (624)
241 1odf_A YGR205W, hypothetical 3 47.9 8.4 0.00029 40.1 2.6 20 79-98 29-48 (290)
242 3a00_A Guanylate kinase, GMP k 47.4 4.4 0.00015 38.8 0.3 15 84-98 4-18 (186)
243 3cf2_A TER ATPase, transitiona 47.4 8.5 0.00029 45.9 2.9 77 47-124 200-295 (806)
244 4etp_A Kinesin-like protein KA 47.3 43 0.0015 36.5 8.3 15 608-622 44-58 (403)
245 1lvg_A Guanylate kinase, GMP k 47.1 4.5 0.00015 39.3 0.3 16 83-98 6-21 (198)
246 3qh9_A Liprin-beta-2; coiled-c 47.1 1.2E+02 0.0041 25.2 8.8 52 535-618 26-77 (81)
247 1zp6_A Hypothetical protein AT 47.0 5.6 0.00019 37.7 1.1 17 82-98 10-26 (191)
248 4ag6_A VIRB4 ATPase, type IV s 47.0 4.4 0.00015 43.8 0.3 19 78-98 34-52 (392)
249 1ypw_A Transitional endoplasmi 46.3 10 0.00035 45.4 3.3 77 47-124 200-295 (806)
250 3sja_C Golgi to ER traffic pro 45.7 83 0.0028 25.2 7.4 52 377-428 4-55 (65)
251 3pxi_A Negative regulator of g 45.5 10 0.00034 44.9 3.1 30 69-98 189-218 (758)
252 2r8r_A Sensor protein; KDPD, P 45.4 5.3 0.00018 40.3 0.5 17 82-98 7-23 (228)
253 2ykg_A Probable ATP-dependent 45.2 8.2 0.00028 44.8 2.2 24 73-98 22-45 (696)
254 2d7d_A Uvrabc system protein B 45.2 18 0.00062 42.1 5.2 89 47-141 4-96 (661)
255 2b5u_A Colicin E3; high resolu 45.2 3.6E+02 0.012 29.9 17.4 78 628-705 296-378 (551)
256 3trt_A Vimentin; cytoskeleton, 45.0 1.1E+02 0.0036 24.9 8.5 9 613-621 67-75 (77)
257 1ye8_A Protein THEP1, hypothet 44.9 5.4 0.00019 38.2 0.5 15 84-98 3-17 (178)
258 1ly1_A Polynucleotide kinase; 44.9 6.3 0.00022 36.8 1.0 17 82-98 3-19 (181)
259 1rj9_A FTSY, signal recognitio 44.6 6.1 0.00021 41.5 0.9 17 82-98 103-119 (304)
260 2zqm_A Prefoldin beta subunit 44.5 1.6E+02 0.0053 25.6 12.0 27 534-560 19-45 (117)
261 3trf_A Shikimate kinase, SK; a 44.4 6.5 0.00022 37.1 1.0 16 83-98 7-22 (185)
262 3b9q_A Chloroplast SRP recepto 44.4 6.5 0.00022 41.2 1.1 17 82-98 101-117 (302)
263 3u59_A Tropomyosin beta chain; 43.8 1.6E+02 0.0053 25.4 10.9 54 534-595 43-96 (101)
264 1l8d_A DNA double-strand break 43.7 1.6E+02 0.0054 25.4 10.7 27 535-561 17-43 (112)
265 3pxi_A Negative regulator of g 43.6 9.7 0.00033 45.0 2.6 17 82-98 522-538 (758)
266 1r6b_X CLPA protein; AAA+, N-t 43.5 9.9 0.00034 44.9 2.6 30 69-98 195-224 (758)
267 1gm5_A RECG; helicase, replica 43.5 7.9 0.00027 46.1 1.8 30 69-98 377-406 (780)
268 1wp9_A ATP-dependent RNA helic 43.5 7.8 0.00027 41.8 1.6 24 72-98 17-40 (494)
269 1sxj_A Activator 1 95 kDa subu 43.3 9.6 0.00033 42.9 2.4 17 82-98 78-94 (516)
270 3lfu_A DNA helicase II; SF1 he 43.2 6.4 0.00022 45.3 0.9 19 80-98 21-39 (647)
271 3lnc_A Guanylate kinase, GMP k 43.0 7.5 0.00026 38.4 1.3 16 83-98 29-44 (231)
272 2j41_A Guanylate kinase; GMP, 43.0 6.5 0.00022 37.7 0.8 16 83-98 8-23 (207)
273 1moz_A ARL1, ADP-ribosylation 42.9 10 0.00034 35.2 2.1 29 70-98 6-35 (183)
274 2gza_A Type IV secretion syste 42.8 5.6 0.00019 42.7 0.3 20 77-98 173-192 (361)
275 2ehv_A Hypothetical protein PH 42.7 6.6 0.00022 38.8 0.8 16 83-98 32-47 (251)
276 1r6b_X CLPA protein; AAA+, N-t 42.7 11 0.00039 44.3 3.0 17 82-98 489-505 (758)
277 1qhx_A CPT, protein (chloramph 42.6 7.2 0.00024 36.5 1.0 16 83-98 5-20 (178)
278 2pt7_A CAG-ALFA; ATPase, prote 42.6 5.5 0.00019 42.3 0.2 19 78-98 170-188 (330)
279 3m91_A Proteasome-associated A 42.6 93 0.0032 23.6 6.9 42 577-621 8-49 (51)
280 4dci_A Uncharacterized protein 42.4 1.7E+02 0.0058 27.3 10.3 33 529-561 30-62 (150)
281 2bdt_A BH3686; alpha-beta prot 42.2 6.8 0.00023 37.2 0.8 16 83-98 4-19 (189)
282 1gd2_E Transcription factor PA 41.8 46 0.0016 27.0 5.5 24 572-595 23-46 (70)
283 2i1j_A Moesin; FERM, coiled-co 41.7 28 0.00097 39.8 6.0 29 596-624 420-448 (575)
284 2px0_A Flagellar biosynthesis 41.6 6.8 0.00023 40.9 0.7 17 82-98 106-122 (296)
285 4a4z_A Antiviral helicase SKI2 41.5 10 0.00035 46.5 2.3 24 72-97 47-70 (997)
286 3etw_A Adhesin A; antiparallel 41.4 2E+02 0.0067 25.8 11.4 55 577-634 8-62 (119)
287 1m1j_B Fibrinogen beta chain; 41.4 3.3E+02 0.011 30.1 14.2 9 610-618 169-177 (464)
288 3iij_A Coilin-interacting nucl 41.2 7.2 0.00025 36.7 0.8 16 83-98 13-28 (180)
289 2xzl_A ATP-dependent helicase 41.2 9.1 0.00031 45.8 1.8 25 72-98 368-392 (802)
290 1oyw_A RECQ helicase, ATP-depe 41.1 6.7 0.00023 44.3 0.6 25 72-98 33-57 (523)
291 2jee_A YIIU; FTSZ, septum, coi 40.9 1.6E+02 0.0054 24.6 10.3 53 609-665 20-72 (81)
292 1znw_A Guanylate kinase, GMP k 40.7 7.4 0.00025 37.8 0.8 16 83-98 22-37 (207)
293 1f2t_A RAD50 ABC-ATPase; DNA d 40.3 8.7 0.0003 35.6 1.2 16 83-98 25-40 (149)
294 3uie_A Adenylyl-sulfate kinase 40.2 10 0.00036 36.4 1.8 19 80-98 24-42 (200)
295 2ze6_A Isopentenyl transferase 39.8 8.2 0.00028 39.1 1.0 15 83-97 3-17 (253)
296 3e1s_A Exodeoxyribonuclease V, 39.8 9.9 0.00034 43.6 1.8 25 72-98 197-221 (574)
297 3sjb_C Golgi to ER traffic pro 39.7 1.4E+02 0.0049 25.5 8.4 60 375-434 19-78 (93)
298 2v6i_A RNA helicase; membrane, 39.7 9.9 0.00034 41.7 1.7 16 83-98 4-19 (431)
299 2oqq_A Transcription factor HY 39.7 67 0.0023 23.3 5.3 26 534-559 16-41 (42)
300 1m1j_C Fibrinogen gamma chain; 39.6 4E+02 0.014 28.9 15.3 16 577-592 83-98 (409)
301 1kd8_A GABH AIV, GCN4 acid bas 39.5 68 0.0023 22.4 5.1 28 532-559 5-32 (36)
302 2yhs_A FTSY, cell division pro 39.4 12 0.00041 42.1 2.3 17 82-98 294-310 (503)
303 2wjy_A Regulator of nonsense t 39.3 10 0.00034 45.4 1.8 25 72-98 364-388 (800)
304 3kta_A Chromosome segregation 39.2 7.4 0.00025 36.6 0.5 16 83-98 28-43 (182)
305 3q8t_A Beclin-1; autophagy, AT 39.1 1.8E+02 0.0063 24.8 12.9 23 538-560 7-29 (96)
306 3swf_A CGMP-gated cation chann 39.0 1.2E+02 0.004 24.9 7.5 48 533-591 5-52 (74)
307 1z6g_A Guanylate kinase; struc 39.0 7.1 0.00024 38.5 0.4 15 84-98 26-40 (218)
308 2og2_A Putative signal recogni 38.9 8.9 0.0003 41.3 1.1 17 82-98 158-174 (359)
309 1v5w_A DMC1, meiotic recombina 38.9 13 0.00045 39.5 2.4 28 71-98 109-139 (343)
310 2b8t_A Thymidine kinase; deoxy 38.9 7 0.00024 39.1 0.3 18 81-98 12-29 (223)
311 2orw_A Thymidine kinase; TMTK, 38.9 8.1 0.00028 37.2 0.7 16 83-98 5-20 (184)
312 4a2q_A RIG-I, retinoic acid in 38.9 12 0.0004 44.6 2.2 25 72-98 256-280 (797)
313 1g41_A Heat shock protein HSLU 38.8 13 0.00045 41.2 2.5 41 82-122 51-107 (444)
314 2oxj_A Hybrid alpha/beta pepti 38.6 64 0.0022 22.2 4.8 26 532-557 5-30 (34)
315 2i3b_A HCR-ntpase, human cance 38.3 7.9 0.00027 37.5 0.6 16 83-98 3-18 (189)
316 3t5d_A Septin-7; GTP-binding p 38.3 8.5 0.00029 39.3 0.8 21 78-98 5-25 (274)
317 3vaa_A Shikimate kinase, SK; s 38.1 9.1 0.00031 36.9 1.0 16 83-98 27-42 (199)
318 2oca_A DAR protein, ATP-depend 38.1 8.5 0.00029 42.8 0.8 24 73-98 122-145 (510)
319 1l8d_A DNA double-strand break 37.9 2E+02 0.0067 24.8 10.5 17 537-553 26-42 (112)
320 1kht_A Adenylate kinase; phosp 37.7 8.7 0.0003 36.1 0.7 16 83-98 5-20 (192)
321 4a2w_A RIG-I, retinoic acid in 37.7 12 0.0004 45.6 2.1 25 72-98 256-280 (936)
322 2i1j_A Moesin; FERM, coiled-co 37.7 1.2E+02 0.004 34.7 10.2 19 574-592 338-356 (575)
323 3kb2_A SPBC2 prophage-derived 37.4 9.9 0.00034 35.1 1.0 16 83-98 3-18 (173)
324 1kag_A SKI, shikimate kinase I 37.3 8.9 0.00031 35.6 0.7 16 83-98 6-21 (173)
325 3kl4_A SRP54, signal recogniti 37.2 19 0.00063 39.8 3.4 18 81-98 97-114 (433)
326 2z83_A Helicase/nucleoside tri 37.1 11 0.00039 41.6 1.7 16 83-98 23-38 (459)
327 1x8y_A Lamin A/C; structural p 37.0 86 0.0029 26.3 6.8 72 541-616 2-77 (86)
328 2qen_A Walker-type ATPase; unk 37.0 12 0.0004 38.8 1.7 17 82-98 32-48 (350)
329 3mov_A Lamin-B1; LMNB1, B-type 37.0 1E+02 0.0036 26.4 7.4 38 576-613 42-83 (95)
330 1yks_A Genome polyprotein [con 36.8 11 0.00038 41.4 1.5 21 76-98 5-25 (440)
331 3u59_A Tropomyosin beta chain; 36.7 2E+02 0.0069 24.6 12.8 25 535-559 23-47 (101)
332 2ga8_A Hypothetical 39.9 kDa p 36.6 19 0.00065 38.7 3.2 21 78-98 21-41 (359)
333 1gk4_A Vimentin; intermediate 36.6 1.8E+02 0.0062 24.1 10.0 70 543-616 2-75 (84)
334 1pzn_A RAD51, DNA repair and r 36.5 15 0.00051 39.2 2.4 29 70-98 117-148 (349)
335 1knq_A Gluconate kinase; ALFA/ 36.2 11 0.00037 35.2 1.1 17 82-98 9-25 (175)
336 2e7s_A RAB guanine nucleotide 36.1 77 0.0026 29.1 6.7 64 603-669 61-124 (135)
337 2r2a_A Uncharacterized protein 36.0 9.1 0.00031 37.5 0.5 16 83-98 7-22 (199)
338 1uaa_A REP helicase, protein ( 36.0 9.3 0.00032 44.5 0.7 19 80-98 14-32 (673)
339 2i1q_A DNA repair and recombin 35.9 15 0.00053 38.2 2.4 29 70-98 84-115 (322)
340 1vma_A Cell division protein F 35.7 12 0.0004 39.4 1.4 17 82-98 105-121 (306)
341 3m48_A General control protein 35.6 60 0.0021 22.3 4.3 25 532-556 4-28 (33)
342 3nmd_A CGMP dependent protein 35.3 65 0.0022 26.3 5.4 23 597-619 42-64 (72)
343 3he5_A Synzip1; heterodimeric 35.2 1.2E+02 0.0042 21.6 6.8 44 537-595 5-48 (49)
344 3asz_A Uridine kinase; cytidin 35.1 10 0.00034 36.7 0.7 16 83-98 8-23 (211)
345 2qmh_A HPR kinase/phosphorylas 35.1 11 0.00038 37.3 1.0 20 79-98 32-51 (205)
346 1x79_B RAB GTPase binding effe 35.1 2.4E+02 0.0081 25.0 13.2 86 609-697 6-94 (112)
347 1tev_A UMP-CMP kinase; ploop, 35.0 11 0.00038 35.4 1.0 16 83-98 5-20 (196)
348 2zj8_A DNA helicase, putative 35.0 9.3 0.00032 44.8 0.6 20 77-98 37-56 (720)
349 3cm0_A Adenylate kinase; ATP-b 35.0 11 0.00038 35.4 1.0 16 83-98 6-21 (186)
350 3vem_A Helicase protein MOM1; 34.9 2.4E+02 0.0083 25.0 11.2 40 639-681 59-98 (115)
351 1m1j_A Fibrinogen alpha subuni 34.9 4.9E+02 0.017 28.5 14.6 28 576-603 109-136 (491)
352 3swy_A Cyclic nucleotide-gated 34.8 1.1E+02 0.0036 22.8 6.0 43 533-586 3-45 (46)
353 3rc3_A ATP-dependent RNA helic 34.8 10 0.00034 44.5 0.8 45 77-124 153-201 (677)
354 3bs4_A Uncharacterized protein 34.8 38 0.0013 34.6 5.0 27 71-98 8-37 (260)
355 2qor_A Guanylate kinase; phosp 34.6 9.8 0.00033 36.8 0.5 16 83-98 14-29 (204)
356 2rhm_A Putative kinase; P-loop 34.6 11 0.00038 35.5 0.9 17 82-98 6-22 (193)
357 1cr0_A DNA primase/helicase; R 34.4 11 0.00038 38.7 1.0 27 72-98 24-52 (296)
358 2eyq_A TRCF, transcription-rep 34.4 19 0.00064 44.9 3.1 29 69-97 612-640 (1151)
359 2z43_A DNA repair and recombin 34.4 14 0.00048 38.8 1.8 28 71-98 94-124 (324)
360 1gku_B Reverse gyrase, TOP-RG; 34.4 16 0.00054 45.1 2.5 23 72-96 64-86 (1054)
361 3bas_A Myosin heavy chain, str 34.3 2.1E+02 0.0071 24.0 10.3 15 579-593 71-85 (89)
362 1uf9_A TT1252 protein; P-loop, 34.2 14 0.00046 35.2 1.5 21 78-98 5-25 (203)
363 1htw_A HI0065; nucleotide-bind 34.0 12 0.00042 35.0 1.1 17 82-98 34-50 (158)
364 2fna_A Conserved hypothetical 33.8 15 0.00051 38.1 1.8 17 82-98 31-47 (357)
365 3caz_A BAR protein; thermo-aci 33.7 3.3E+02 0.011 26.2 11.6 47 535-586 98-144 (294)
366 1y63_A LMAJ004144AAA protein; 33.7 11 0.00038 35.8 0.8 16 83-98 12-27 (184)
367 3c3g_A Alpha/beta peptide with 33.5 88 0.003 21.4 4.8 25 532-556 4-28 (33)
368 2bbw_A Adenylate kinase 4, AK4 33.4 11 0.00039 37.5 0.8 17 82-98 28-44 (246)
369 1svm_A Large T antigen; AAA+ f 33.2 16 0.00053 39.6 1.9 17 82-98 170-186 (377)
370 2p6r_A Afuhel308 helicase; pro 33.2 11 0.00036 44.2 0.6 21 76-98 37-57 (702)
371 3tif_A Uncharacterized ABC tra 33.1 12 0.00039 37.6 0.8 16 83-98 33-48 (235)
372 3l9o_A ATP-dependent RNA helic 33.0 14 0.00048 45.8 1.7 25 72-98 192-216 (1108)
373 1e6c_A Shikimate kinase; phosp 33.0 12 0.0004 34.7 0.8 16 83-98 4-19 (173)
374 1ci6_A Transcription factor AT 32.8 1.3E+02 0.0043 23.7 6.7 38 576-623 21-58 (63)
375 2iut_A DNA translocase FTSK; n 32.5 11 0.00037 43.2 0.5 17 82-98 215-231 (574)
376 1a5t_A Delta prime, HOLB; zinc 32.5 19 0.00066 37.8 2.5 28 71-98 13-41 (334)
377 3crm_A TRNA delta(2)-isopenten 32.4 15 0.00051 39.0 1.5 16 82-97 6-21 (323)
378 1j8m_F SRP54, signal recogniti 32.3 30 0.001 36.0 3.8 16 83-98 100-115 (297)
379 4eun_A Thermoresistant glucoki 32.1 12 0.00042 36.0 0.8 16 83-98 31-46 (200)
380 1nks_A Adenylate kinase; therm 32.1 12 0.00041 35.1 0.7 16 83-98 3-18 (194)
381 3dm5_A SRP54, signal recogniti 32.0 25 0.00086 38.9 3.4 18 81-98 100-117 (443)
382 2zr9_A Protein RECA, recombina 32.0 17 0.00057 38.9 1.8 30 69-98 45-78 (349)
383 2xau_A PRE-mRNA-splicing facto 31.9 17 0.0006 43.1 2.2 16 83-98 111-126 (773)
384 3m6a_A ATP-dependent protease 31.8 12 0.00042 42.4 0.8 18 81-98 108-125 (543)
385 1s96_A Guanylate kinase, GMP k 31.8 12 0.00042 37.0 0.8 16 83-98 18-33 (219)
386 2bwj_A Adenylate kinase 5; pho 31.8 13 0.00045 35.2 0.9 16 83-98 14-29 (199)
387 2vli_A Antibiotic resistance p 31.8 15 0.0005 34.4 1.2 16 83-98 7-22 (183)
388 1fxk_A Prefoldin; archaeal pro 31.7 2.4E+02 0.0081 23.9 10.7 28 534-561 14-44 (107)
389 2qag_A Septin-2, protein NEDD5 31.5 11 0.00039 40.3 0.5 23 76-98 32-54 (361)
390 1w4r_A Thymidine kinase; type 31.5 14 0.00049 36.1 1.2 18 79-96 18-35 (195)
391 2va8_A SSO2462, SKI2-type heli 31.4 16 0.00054 42.7 1.7 20 77-98 44-63 (715)
392 2xgj_A ATP-dependent RNA helic 31.4 14 0.00049 45.2 1.4 31 721-751 957-992 (1010)
393 2iyv_A Shikimate kinase, SK; t 31.2 13 0.00044 35.0 0.8 15 83-97 4-18 (184)
394 1xx6_A Thymidine kinase; NESG, 31.2 12 0.00042 36.4 0.6 16 83-98 10-25 (191)
395 3c3f_A Alpha/beta peptide with 31.0 1E+02 0.0035 21.2 4.8 25 532-556 5-29 (34)
396 3qks_A DNA double-strand break 30.6 15 0.00052 35.8 1.2 16 83-98 25-40 (203)
397 3o8b_A HCV NS3 protease/helica 30.6 18 0.00063 42.1 2.0 16 83-98 234-249 (666)
398 3cve_A Homer protein homolog 1 30.5 2.2E+02 0.0075 23.2 8.7 24 535-558 21-44 (72)
399 1via_A Shikimate kinase; struc 30.5 13 0.00046 34.6 0.7 16 83-98 6-21 (175)
400 2b9c_A Striated-muscle alpha t 30.4 70 0.0024 29.8 5.6 72 501-585 72-143 (147)
401 2pt5_A Shikimate kinase, SK; a 30.4 15 0.0005 33.9 1.0 16 83-98 2-17 (168)
402 2lw1_A ABC transporter ATP-bin 30.4 2E+02 0.007 23.9 8.2 54 379-432 29-83 (89)
403 2ius_A DNA translocase FTSK; n 30.3 13 0.00043 42.1 0.5 16 83-98 169-184 (512)
404 1lkx_A Myosin IE heavy chain; 30.2 24 0.00081 41.4 2.9 21 78-98 91-111 (697)
405 2gno_A DNA polymerase III, gam 30.1 20 0.0007 37.4 2.1 30 69-98 6-35 (305)
406 3ney_A 55 kDa erythrocyte memb 30.1 14 0.00048 36.2 0.8 16 83-98 21-36 (197)
407 2w00_A HSDR, R.ECOR124I; ATP-b 30.1 17 0.00057 44.8 1.6 14 85-98 304-317 (1038)
408 3vp9_A General transcriptional 30.1 1.6E+02 0.0056 25.1 7.3 17 603-619 69-85 (92)
409 1xjc_A MOBB protein homolog; s 30.0 14 0.00048 35.3 0.8 16 83-98 6-21 (169)
410 1zd8_A GTP:AMP phosphotransfer 30.0 14 0.00047 36.3 0.7 16 83-98 9-24 (227)
411 3t61_A Gluconokinase; PSI-biol 30.0 14 0.00048 35.5 0.7 16 83-98 20-35 (202)
412 2k48_A Nucleoprotein; viral pr 30.0 2.3E+02 0.008 24.6 8.2 32 610-641 36-67 (107)
413 3foz_A TRNA delta(2)-isopenten 29.8 16 0.00056 38.5 1.3 17 82-98 11-27 (316)
414 3a8t_A Adenylate isopentenyltr 29.8 16 0.00053 39.1 1.1 16 83-98 42-57 (339)
415 1sq5_A Pantothenate kinase; P- 29.7 29 0.00098 36.1 3.2 17 82-98 81-97 (308)
416 1qf9_A UMP/CMP kinase, protein 29.7 15 0.00052 34.4 0.9 16 83-98 8-23 (194)
417 3hr8_A Protein RECA; alpha and 29.7 19 0.00065 38.6 1.8 30 69-98 45-78 (356)
418 1ukz_A Uridylate kinase; trans 29.6 15 0.00053 35.0 1.0 17 82-98 16-32 (203)
419 3umf_A Adenylate kinase; rossm 29.5 14 0.00048 36.7 0.7 15 83-97 31-45 (217)
420 2c95_A Adenylate kinase 1; tra 29.5 15 0.00052 34.6 0.9 16 83-98 11-26 (196)
421 3sr0_A Adenylate kinase; phosp 29.5 14 0.00049 36.2 0.8 14 84-97 3-16 (206)
422 3a4m_A L-seryl-tRNA(SEC) kinas 29.4 15 0.00053 37.1 1.0 17 82-98 5-21 (260)
423 3aez_A Pantothenate kinase; tr 29.0 21 0.00071 37.5 2.0 18 81-98 90-107 (312)
424 1aky_A Adenylate kinase; ATP:A 29.0 15 0.00051 35.8 0.8 16 83-98 6-21 (220)
425 2yvu_A Probable adenylyl-sulfa 28.8 18 0.00062 34.1 1.3 18 81-98 13-30 (186)
426 1tq4_A IIGP1, interferon-induc 28.8 16 0.00056 40.0 1.1 17 82-98 70-86 (413)
427 2ged_A SR-beta, signal recogni 28.7 15 0.00052 34.4 0.8 19 80-98 47-65 (193)
428 3qf7_A RAD50; ABC-ATPase, ATPa 28.7 17 0.00057 39.0 1.2 15 84-98 26-40 (365)
429 2zts_A Putative uncharacterize 28.6 16 0.00054 35.9 0.9 26 73-98 19-47 (251)
430 3fb4_A Adenylate kinase; psych 28.6 15 0.00052 35.5 0.8 15 84-98 3-17 (216)
431 3iv1_A Tumor susceptibility ge 28.6 2.5E+02 0.0086 23.2 9.1 26 603-628 12-37 (78)
432 2ce2_X GTPase HRAS; signaling 28.6 14 0.00048 33.1 0.5 16 83-98 5-20 (166)
433 1c9k_A COBU, adenosylcobinamid 28.5 16 0.00054 35.3 0.9 14 84-97 2-15 (180)
434 1w9i_A Myosin II heavy chain; 28.5 26 0.0009 41.5 2.9 21 78-98 169-189 (770)
435 4ddu_A Reverse gyrase; topoiso 28.4 22 0.00075 44.1 2.3 25 72-98 86-110 (1104)
436 2vhj_A Ntpase P4, P4; non- hyd 28.4 19 0.00063 38.3 1.4 17 82-98 124-140 (331)
437 1jjv_A Dephospho-COA kinase; P 28.3 15 0.00053 35.2 0.8 16 83-98 4-19 (206)
438 1zu4_A FTSY; GTPase, signal re 28.3 15 0.00053 38.7 0.8 16 83-98 107-122 (320)
439 2v9p_A Replication protein E1; 28.2 16 0.00054 38.4 0.8 17 82-98 127-143 (305)
440 3k1j_A LON protease, ATP-depen 27.9 21 0.00071 41.0 1.8 27 70-98 51-77 (604)
441 3crv_A XPD/RAD3 related DNA he 27.9 22 0.00076 40.2 2.1 28 69-98 12-39 (551)
442 3exa_A TRNA delta(2)-isopenten 27.7 19 0.00064 38.1 1.3 16 83-98 5-20 (322)
443 2v26_A Myosin VI; calmodulin-b 27.7 27 0.00094 41.5 2.9 21 78-98 137-157 (784)
444 2cdn_A Adenylate kinase; phosp 27.7 19 0.00064 34.5 1.2 19 80-98 19-37 (201)
445 1kd8_B GABH BLL, GCN4 acid bas 27.5 1.5E+02 0.005 20.7 5.2 27 532-558 5-31 (36)
446 2wq1_A General control protein 27.4 1.3E+02 0.0044 20.6 4.8 24 532-555 4-27 (33)
447 1g8x_A Myosin II heavy chain f 27.4 27 0.00093 42.8 2.8 21 78-98 169-189 (1010)
448 2pcj_A ABC transporter, lipopr 27.2 16 0.00056 36.2 0.7 15 84-98 33-47 (224)
449 3dl0_A Adenylate kinase; phosp 27.1 17 0.00058 35.2 0.8 15 84-98 3-17 (216)
450 1pjr_A PCRA; DNA repair, DNA r 26.9 15 0.00052 43.2 0.4 18 81-98 24-41 (724)
451 1ak2_A Adenylate kinase isoenz 26.9 17 0.00058 35.9 0.8 17 82-98 17-33 (233)
452 3qne_A Seryl-tRNA synthetase, 26.8 1.6E+02 0.0056 32.7 8.8 7 725-731 191-197 (485)
453 2if2_A Dephospho-COA kinase; a 26.8 17 0.00058 34.8 0.7 16 83-98 3-18 (204)
454 2ycu_A Non muscle myosin 2C, a 26.5 29 0.001 42.4 2.9 21 78-98 143-163 (995)
455 2whx_A Serine protease/ntpase/ 26.5 21 0.00072 41.2 1.5 24 73-98 180-203 (618)
456 2dyk_A GTP-binding protein; GT 26.4 17 0.00057 32.7 0.5 16 83-98 3-18 (161)
457 2vl7_A XPD; helicase, unknown 26.4 25 0.00086 39.7 2.2 28 69-98 16-43 (540)
458 2cbz_A Multidrug resistance-as 26.4 18 0.0006 36.3 0.8 16 83-98 33-48 (237)
459 2v3c_C SRP54, signal recogniti 26.4 21 0.00071 39.4 1.4 16 83-98 101-116 (432)
460 2onk_A Molybdate/tungstate ABC 26.4 18 0.0006 36.5 0.8 16 83-98 26-41 (240)
461 3gfo_A Cobalt import ATP-bindi 26.3 18 0.0006 37.3 0.8 15 84-98 37-51 (275)
462 1cke_A CK, MSSA, protein (cyti 26.3 19 0.00065 35.0 1.0 16 83-98 7-22 (227)
463 2jaq_A Deoxyguanosine kinase; 26.2 18 0.00061 34.3 0.7 15 84-98 3-17 (205)
464 1zuh_A Shikimate kinase; alpha 26.1 20 0.00067 33.2 1.0 16 83-98 9-24 (168)
465 2w83_C C-JUN-amino-terminal ki 26.1 2.7E+02 0.0093 22.8 8.5 47 528-589 30-76 (77)
466 1nlf_A Regulatory protein REPA 26.0 18 0.00061 36.9 0.7 16 83-98 32-47 (279)
467 2pbr_A DTMP kinase, thymidylat 25.9 18 0.00062 33.9 0.7 15 84-98 3-17 (195)
468 3f9v_A Minichromosome maintena 25.9 17 0.00059 41.7 0.7 16 83-98 329-344 (595)
469 3cvf_A Homer-3, homer protein 25.8 2.8E+02 0.0097 22.9 9.1 24 535-558 27-50 (79)
470 1w7j_A Myosin VA; motor protei 25.8 31 0.0011 41.0 2.9 21 78-98 153-173 (795)
471 2no2_A HIP-I, huntingtin-inter 25.8 3.3E+02 0.011 23.7 15.6 19 650-668 56-74 (107)
472 1zak_A Adenylate kinase; ATP:A 25.8 18 0.00062 35.3 0.7 16 83-98 7-22 (222)
473 2plr_A DTMP kinase, probable t 25.7 22 0.00076 33.8 1.3 17 82-98 5-21 (213)
474 1kk8_A Myosin heavy chain, str 25.7 28 0.00097 41.6 2.5 21 78-98 166-186 (837)
475 1g6h_A High-affinity branched- 25.7 18 0.00063 36.6 0.8 15 84-98 36-50 (257)
476 1mv5_A LMRA, multidrug resista 25.6 21 0.00071 35.9 1.1 16 83-98 30-45 (243)
477 1t2k_D Cyclic-AMP-dependent tr 25.6 2.2E+02 0.0074 22.0 6.9 46 569-624 13-58 (61)
478 1ji0_A ABC transporter; ATP bi 25.5 19 0.00064 36.1 0.8 15 84-98 35-49 (240)
479 1f6b_A SAR1; gtpases, N-termin 25.4 29 0.001 32.9 2.2 27 72-98 15-42 (198)
480 2xv5_A Lamin-A/C; structural p 25.4 2.1E+02 0.0073 23.3 7.0 41 574-614 8-52 (74)
481 3g9g_A Suppressor of yeast pro 25.4 3.8E+02 0.013 27.6 10.7 67 492-558 68-149 (287)
482 2cxx_A Probable GTP-binding pr 25.4 27 0.00093 32.3 1.9 16 83-98 3-18 (190)
483 4db1_A Myosin-7; S1DC, cardiac 25.3 32 0.0011 40.8 2.9 21 78-98 168-188 (783)
484 2qt1_A Nicotinamide riboside k 25.3 19 0.00064 34.6 0.7 16 83-98 23-38 (207)
485 1vcs_A Vesicle transport throu 25.2 1.3E+02 0.0044 26.0 6.1 25 529-553 68-92 (102)
486 1sgw_A Putative ABC transporte 25.2 18 0.00061 35.8 0.5 14 85-98 39-52 (214)
487 3d3q_A TRNA delta(2)-isopenten 25.1 20 0.00069 38.2 1.0 16 83-98 9-24 (340)
488 1np6_A Molybdopterin-guanine d 25.1 19 0.00066 34.3 0.8 16 83-98 8-23 (174)
489 1b0u_A Histidine permease; ABC 25.1 19 0.00065 36.7 0.8 15 84-98 35-49 (262)
490 3u4q_A ATP-dependent helicase/ 25.1 24 0.0008 44.3 1.7 18 81-98 23-40 (1232)
491 1zj6_A ADP-ribosylation factor 25.1 35 0.0012 31.7 2.6 23 76-98 11-33 (187)
492 1ik9_A DNA repair protein XRCC 25.1 2.5E+02 0.0087 27.6 8.9 23 538-560 142-164 (213)
493 2ke4_A CDC42-interacting prote 25.0 3.3E+02 0.011 23.4 10.1 35 526-560 13-47 (98)
494 2pez_A Bifunctional 3'-phospho 24.9 22 0.00075 33.3 1.1 16 83-98 7-22 (179)
495 2ff7_A Alpha-hemolysin translo 24.8 20 0.00067 36.2 0.8 15 84-98 38-52 (247)
496 2ghi_A Transport protein; mult 24.8 20 0.00067 36.5 0.8 16 83-98 48-63 (260)
497 2yz2_A Putative ABC transporte 24.7 20 0.00067 36.6 0.8 16 83-98 35-50 (266)
498 2f1r_A Molybdopterin-guanine d 24.7 12 0.00039 35.8 -0.9 16 83-98 4-19 (171)
499 1ex7_A Guanylate kinase; subst 24.7 19 0.00063 34.9 0.5 15 84-98 4-18 (186)
500 3auy_A DNA double-strand break 24.7 24 0.00081 37.7 1.5 15 81-95 25-39 (371)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=8.2e-95 Score=792.33 Aligned_cols=348 Identities=38% Similarity=0.634 Sum_probs=297.5
Q ss_pred CCCceEEEEEeCCCCcchhccCCceEEEEeCC--CcceeeCceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEE
Q 004235 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHG--NPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (766)
Q Consensus 6 ~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~--~~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~t 83 (766)
..++|+|+|||||++..|...++..|+.+.++ ...+.++.+.|+||+||+++++ |++||+.++.|+|+++|+|||+|
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~~~~f~FD~Vf~~~~~-Q~~Vy~~~~~plv~~~l~G~n~t 87 (365)
T 2y65_A 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNAS-QEKVYNEAAKSIVTDVLAGYNGT 87 (365)
T ss_dssp CEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEETTEEEECSEEECTTCC-HHHHHHHHTHHHHHHHHTTCCEE
T ss_pred CCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEECCEEEeCceEecCCCC-HHHHHHHhhhhHHHHHhCCCceE
Confidence 45699999999999999998888888877664 5667788899999999999865 89999999999999999999999
Q ss_pred EEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccccccCCC
Q 004235 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (766)
Q Consensus 84 I~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~ 163 (766)
|||||||||||||||+|+.+++..+|||||++++||+.+.......+|.|+|||+|||||.|+|||++..
T Consensus 88 ifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~---------- 157 (365)
T 2y65_A 88 IFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK---------- 157 (365)
T ss_dssp EEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTC----------
T ss_pred EEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCc----------
Confidence 9999999999999999988777889999999999999999877788999999999999999999997632
Q ss_pred CCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccC
Q 004235 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (766)
Q Consensus 164 ~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~ 243 (766)
.++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+....
T Consensus 158 ---------~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~--- 225 (365)
T 2y65_A 158 ---------VNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE--- 225 (365)
T ss_dssp ---------CSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT---
T ss_pred ---------CCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC---
Confidence 47899999999999999999999999999999999999999999999999999999999999985421
Q ss_pred CCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCChh
Q 004235 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (766)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSkL 323 (766)
......|+|+|||||||||++++++.|.|++||.+||+||++||+||.+|+++.+ .|||||||||
T Consensus 226 -----------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~----~hvPyRdSkL 290 (365)
T 2y65_A 226 -----------NQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNK----THIPYRDSKL 290 (365)
T ss_dssp -----------TCCEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCC----SCCCGGGCHH
T ss_pred -----------CCCEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCccccCHH
Confidence 1245789999999999999999999999999999999999999999999998642 5999999999
Q ss_pred hhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHH-HHHHHHHHHH
Q 004235 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDM-QKLRQQLKYL 391 (766)
Q Consensus 324 TrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i-~~L~~~i~~l 391 (766)
||||||||||||+|+|||||||+..+++||++||+||+||++|+|+|++|.++...++ ++++++++.+
T Consensus 291 T~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~ 359 (365)
T 2y65_A 291 TRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKN 359 (365)
T ss_dssp HHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC--------
T ss_pred HHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877544 4455555443
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=2.6e-94 Score=788.60 Aligned_cols=345 Identities=44% Similarity=0.677 Sum_probs=293.2
Q ss_pred CCCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC---------ceeEEcceeeCCCCCchhhhhhhhhHhHHHH
Q 004235 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (766)
Q Consensus 5 ~~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~---------~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~ 75 (766)
...++|+|+|||||++..|...++..|+.+.+...++.+. .+.|+||+||+++++ |++||+.++.|+|++
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~-Q~~Vy~~~~~plv~~ 96 (372)
T 3b6u_A 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAK-QFELYDETFRPLVDS 96 (372)
T ss_dssp ---CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCC-HHHHHHHTHHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCc-hHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999888776666552 368999999999865 999999999999999
Q ss_pred HhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccc
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~ 155 (766)
+|+|||+||||||||||||||||+|..+++..+|||||++++||..+.. .....|.|+|||+|||||.|+|||++..
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~-- 173 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDLLSKDQ-- 173 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEETTSSCT--
T ss_pred HhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhh-ccCCceEEEEEEEEEeCCEEEECCCCCC--
Confidence 9999999999999999999999999776677899999999999999987 4678999999999999999999997642
Q ss_pred cccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEE
Q 004235 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (766)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~ 235 (766)
...+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|+
T Consensus 174 ----------------~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~ 237 (372)
T 3b6u_A 174 ----------------TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIE 237 (372)
T ss_dssp ----------------TCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEE
T ss_pred ----------------CCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEE
Confidence 2468999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCc
Q 004235 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVH 315 (766)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~ 315 (766)
+..... +.......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|++++ ..|
T Consensus 238 ~~~~~~-----------~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~----~~h 302 (372)
T 3b6u_A 238 CSEVGL-----------DGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGK----STH 302 (372)
T ss_dssp EEC----------------CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC-------C
T ss_pred EeecCC-----------CCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCC----CCC
Confidence 753211 11234678999999999999999999999999999999999999999999998754 259
Q ss_pred ccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHH
Q 004235 316 VPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKL 384 (766)
Q Consensus 316 vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~L 384 (766)
||||||||||||||||||||+|+|||||||+..+++||++||+||+||++|+|+|++|.|+..+.+++|
T Consensus 303 vPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~~~~~ 371 (372)
T 3b6u_A 303 IPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREF 371 (372)
T ss_dssp CCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC----------
T ss_pred CcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999987777655
No 3
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=1.7e-93 Score=777.76 Aligned_cols=332 Identities=42% Similarity=0.655 Sum_probs=278.1
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC--------------ceeEEcceeeCCCCCchhhhhhhhhHhH
Q 004235 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--------------THSFTFDHVYGNGGSPSSAMFGECVAPL 72 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~--------------~~~F~FD~Vf~~~~s~q~~vy~~~v~pl 72 (766)
.++|+|+|||||++..|...++..|+.+.+...++.+. .+.|+||+||+++++ |++||+.++.|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~-Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSC-NYGIFQASFKPL 81 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCC-HHHHHHHTTHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcc-hhHHHHHHHHHH
Confidence 35999999999999999999998898887665555442 368999999999865 899999999999
Q ss_pred HHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~ 152 (766)
|+++|+|||+||||||||||||||||+|+. ..+|||||++++||+.+........|.|+|||+|||||.|+|||++.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~---~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 158 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNK---EEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN 158 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCS---SSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEeecCC---ccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCC
Confidence 999999999999999999999999998854 56999999999999999976777899999999999999999999742
Q ss_pred ccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEE
Q 004235 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (766)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti 232 (766)
.++.|+|++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|
T Consensus 159 --------------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 218 (350)
T 2vvg_A 159 --------------------TKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMV 218 (350)
T ss_dssp --------------------EEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEE
T ss_pred --------------------cCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEE
Confidence 368899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCC
Q 004235 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (766)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~ 312 (766)
+|++.... +.......|+|+|||||||||++++++.|.|++||.+||+||++||+||.+|+++.
T Consensus 219 ~v~~~~~~------------~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~---- 282 (350)
T 2vvg_A 219 RIECSEVI------------ENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA---- 282 (350)
T ss_dssp EEEEEEC----------------CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTC----
T ss_pred EEEEeecc------------CCCccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC----
Confidence 99885431 11234578999999999999999999999999999999999999999999999864
Q ss_pred CCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchH
Q 004235 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISS 379 (766)
Q Consensus 313 ~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~ 379 (766)
.|||||||||||||||||||||+|+|||||||+..+++||++||+||+||++|+|+|++|.|+..+
T Consensus 283 -~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~~ 348 (350)
T 2vvg_A 283 -THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348 (350)
T ss_dssp -SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTTC
T ss_pred -CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchhc
Confidence 499999999999999999999999999999999999999999999999999999999999998654
No 4
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=2.9e-93 Score=778.13 Aligned_cols=340 Identities=40% Similarity=0.621 Sum_probs=307.7
Q ss_pred CCCCCCCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee----CceeEEcceeeCCCCCchhhhhhhhhHhHHHHH
Q 004235 1 MDTASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI----GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (766)
Q Consensus 1 m~~~~~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~----~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~ 76 (766)
|+.+ .++|+|+|||||++..|...++..|+.+.+... +.+ ..+.|+||+||+++++ |++||+.++.|+|+++
T Consensus 1 ms~~--~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~FD~Vf~~~~~-Q~~Vy~~~~~plv~~~ 76 (355)
T 1goj_A 1 MSSS--ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDT-CTVDSKEAQGSFTFDRVFDMSCK-QSDIFDFSIKPTVDDI 76 (355)
T ss_dssp -CCS--SCBCEEEEEECCCCHHHHTTTCCBCEEECSTTE-EEECSTTCCEEEECSEEECTTCC-HHHHHHHHTHHHHHHH
T ss_pred CCCC--CCCeEEEEECCCCChHHhhcCCceEEEEcCCCe-EEEccCCCccEEeeCeEECCCCc-cHHHHHHHHHHHHHHH
Confidence 5443 579999999999999999899888988776543 333 2478999999999865 9999999999999999
Q ss_pred hCCcCEEEEeecccCCCCccccCCCCC-CCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTMGTGLR-EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm~g~~~-~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~ 155 (766)
|+|||+||||||||||||||||+|+.. ++..+|||||++++||..+.......+|.|+|||+|||||.|+|||+|..
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~-- 154 (355)
T 1goj_A 77 LNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN-- 154 (355)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTC--
T ss_pred hCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCcc--
Confidence 999999999999999999999988543 35678999999999999998877778999999999999999999998642
Q ss_pred cccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEE
Q 004235 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (766)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~ 235 (766)
..+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.
T Consensus 155 -----------------~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~ 217 (355)
T 1goj_A 155 -----------------DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITIT 217 (355)
T ss_dssp -----------------CSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEE
T ss_pred -----------------CCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEE
Confidence 468899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCc
Q 004235 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVH 315 (766)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~ 315 (766)
+.... ......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|++++ ..|
T Consensus 218 ~~~~~--------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~----~~h 279 (355)
T 1goj_A 218 QKNVE--------------TGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGK----SSH 279 (355)
T ss_dssp EEETT--------------TTEEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCS----CSC
T ss_pred EeccC--------------CCceeeeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCC----CCC
Confidence 85421 124578999999999999999999999999999999999999999999999753 359
Q ss_pred ccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHH
Q 004235 316 VPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDM 381 (766)
Q Consensus 316 vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i 381 (766)
||||||||||||||+|||||+|+|||||||++.+++||++||+||+||++|+|+|++|.++...++
T Consensus 280 vPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~l 345 (355)
T 1goj_A 280 VPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL 345 (355)
T ss_dssp CCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCSSS
T ss_pred CCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876544
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.7e-93 Score=780.19 Aligned_cols=342 Identities=35% Similarity=0.572 Sum_probs=251.6
Q ss_pred CCCCCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-------CceeEEcceeeCCCCCchhhhhhhhhHhHHHH
Q 004235 3 TASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (766)
Q Consensus 3 ~~~~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~-------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~ 75 (766)
+.+..++|+|+|||||++..|...++..|+.+.++.. +.+ ..+.|+||+||+++++ |++||+.++.|+|++
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~-~~i~~~~~~~~~~~f~FD~Vf~~~~t-Q~~Vy~~~~~plv~~ 93 (388)
T 3bfn_A 16 FQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCS-LEIANWRNHQETLKYQFDAFYGERST-QQDIYAGSVQPILRH 93 (388)
T ss_dssp SSSCCCCCEEEEEECCCC------------------------------CEEEEECSEEECTTCC-HHHHHHHHTGGGHHH
T ss_pred ccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCe-EEEecCCCCCCeeEEEcceEecCCCC-HhHHHHHHHHHHHHH
Confidence 3455689999999999999998877788876543322 222 2368999999999865 899999999999999
Q ss_pred HhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhc---cccceeeEEeehhhhhcceeeeccCCc
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETL---RHQMEFQLHVSFIEILKEEVRDLLDSV 152 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~---~~~~~~~v~vS~~EIynE~v~DLL~~~ 152 (766)
+|+|||+||||||||||||||||+|+ ...+|||||++.+||+.+... ...+.|.|+|||+|||||.|+|||+|.
T Consensus 94 ~l~G~N~tifAYGqTGSGKTyTM~G~---~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~ 170 (388)
T 3bfn_A 94 LLEGQNASVLAYGPTGAGKTHTMLGS---PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPA 170 (388)
T ss_dssp HTTTCCEEEEEESCTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCS
T ss_pred hhcCceeeEeeecCCCCCCCeEeecC---ccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccC
Confidence 99999999999999999999999885 356899999999999999763 234789999999999999999999864
Q ss_pred ccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEE
Q 004235 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (766)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti 232 (766)
. .++.|+|++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|
T Consensus 171 ~-------------------~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i 231 (388)
T 3bfn_A 171 S-------------------GDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLV 231 (388)
T ss_dssp S-------------------CBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEE
T ss_pred C-------------------CCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEE
Confidence 2 368899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCC
Q 004235 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (766)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~ 312 (766)
+|++..... ......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++.
T Consensus 232 ~v~~~~~~~-------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~---- 294 (388)
T 3bfn_A 232 KVDQRERLA-------------PFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL---- 294 (388)
T ss_dssp EEEEEESST-------------TCCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTC----
T ss_pred EEEEeccCC-------------CCceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC----
Confidence 999854311 123468999999999999999999999999999999999999999999998754
Q ss_pred CCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHH
Q 004235 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQ 386 (766)
Q Consensus 313 ~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~L~~ 386 (766)
.|||||||||||||||||||||+|+|||||||++.+++||++||+||+||++|+|+|++|.++....+..++.
T Consensus 295 -~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l~~~k~ 367 (388)
T 3bfn_A 295 -PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKL 367 (388)
T ss_dssp -SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC-------------------
T ss_pred -CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999999999999988776654443
No 6
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.8e-92 Score=774.01 Aligned_cols=346 Identities=36% Similarity=0.567 Sum_probs=306.2
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-----CceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCE
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNA 82 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~-----~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~ 82 (766)
++|+|+|||||++..|...++..++.. .+...+.. ..+.|+||+||+++++ |++||+. +.|+|+++|+|||+
T Consensus 5 ~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~-Q~~Vy~~-~~~lv~~~l~G~n~ 81 (369)
T 3cob_A 5 GKIRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLWKDDKAKQHMYDRVFDGNAT-QDDVFED-TKYLVQSAVDGYNV 81 (369)
T ss_dssp CBCEEEEEECCCCHHHHHTTCCBCEEE-CSSSEEEEECTTSCEEEEECSEEECTTCC-HHHHHHT-TTHHHHHHHTTCEE
T ss_pred CCeEEEEECCCCChhhccCCCcEEEEc-CCcEEEEecCCCCCceEEecCEEECCCCC-cceehhh-hhhhhHhhhcCCce
Confidence 699999999999999987776433322 23333322 2379999999999865 8999998 79999999999999
Q ss_pred EEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccccccCC
Q 004235 83 TVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANG 162 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~ 162 (766)
||||||||||||||||+|+. ..+|||||++++||+.+........|.|+|||+|||||.|+|||+|...
T Consensus 82 tifAYGqTGSGKTyTM~G~~---~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~-------- 150 (369)
T 3cob_A 82 CIFAYGQTGSGKTFTIYGAD---SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQA-------- 150 (369)
T ss_dssp EEEEEECTTSSHHHHHTBCS---SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSS--------
T ss_pred EEEEECCCCCCCeEeecCCC---CCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCccc--------
Confidence 99999999999999998853 5699999999999999998766789999999999999999999987431
Q ss_pred CCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeeccc
Q 004235 163 HAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHS 242 (766)
Q Consensus 163 ~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~ 242 (766)
....+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++....
T Consensus 151 --------~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-- 220 (369)
T 3cob_A 151 --------KRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-- 220 (369)
T ss_dssp --------CCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT--
T ss_pred --------CCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC--
Confidence 2357999999999999999999999999999999999999999999999999999999999999985421
Q ss_pred CCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCCh
Q 004235 243 VSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSK 322 (766)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSk 322 (766)
......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++. .||||||||
T Consensus 221 ------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-----~hvPyRdSk 283 (369)
T 3cob_A 221 ------------TQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-----QHIPYRNHK 283 (369)
T ss_dssp ------------TCCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-----SCCCGGGCH
T ss_pred ------------CCcEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-----CcCCCcCCH
Confidence 124578999999999999999999999999999999999999999999998764 499999999
Q ss_pred hhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHh
Q 004235 323 LTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELC 396 (766)
Q Consensus 323 LTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~L~~~i~~l~~el~ 396 (766)
|||||||||||||+|+|||||||+..+++||++||+||+||++|+|+|++|.++ .+|.+|++++..++.++.
T Consensus 284 LT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--~ei~~L~~~l~~~~~~~~ 355 (369)
T 3cob_A 284 LTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLKKLVSYWKEQAG 355 (369)
T ss_dssp HHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--HHHHHHHHHTTCC-----
T ss_pred HHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH--HHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999987 778888888877776643
No 7
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.5e-92 Score=767.93 Aligned_cols=338 Identities=42% Similarity=0.633 Sum_probs=290.6
Q ss_pred CCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee--CceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEE
Q 004235 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (766)
Q Consensus 6 ~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~--~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~t 83 (766)
+.++|+|+|||||++..|...+...++.+......+.. +.+.|+||+||+++++ |++||+.++.|+|+++|+|||+|
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~F~FD~Vf~~~~t-Q~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNET-TKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETTSSCEEECSCEECTTSC-HHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECCCCeEEECCEEECCCCC-HHHHHHHHHHHHHHHHHcCCccc
Confidence 46799999999999999987777666655544443332 4589999999999865 89999999999999999999999
Q ss_pred EEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccccccCCC
Q 004235 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (766)
Q Consensus 84 I~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~ 163 (766)
|||||||||||||||+|+ ...+|||||++++||+.+... ....|.|+|||+|||||.|+|||++..
T Consensus 81 ifAYGqTGSGKTyTM~G~---~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~---------- 146 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGS---EDHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQ---------- 146 (349)
T ss_dssp EEEEESTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHGGGC-TTEEEEEEEEEEEEETTEEEESSSSSC----------
T ss_pred eeeecCCCCCCCeEEecC---CCCCchHHHHHHHHHHHHHhC-cCCcEEEEEEEEEEeCCEEEEccCCCC----------
Confidence 999999999999999885 346999999999999999874 467899999999999999999998643
Q ss_pred CCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccC
Q 004235 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (766)
Q Consensus 164 ~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~ 243 (766)
...++.|+|++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++......
T Consensus 147 -------~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~- 218 (349)
T 1t5c_A 147 -------KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEP- 218 (349)
T ss_dssp -------TTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC---
T ss_pred -------CCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCC-
Confidence 135799999999999999999999999999999999999999999999999999999999999998653211
Q ss_pred CCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCChh
Q 004235 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (766)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSkL 323 (766)
.........|+|+|||||||||++++++.|.|++||.+||+||++||+||.+|+++++ ..|||||||||
T Consensus 219 --------~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~---~~hvPyRdSkL 287 (349)
T 1t5c_A 219 --------SNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQV---GGFINYRDSKL 287 (349)
T ss_dssp -------------CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCC---TTSSCGGGSHH
T ss_pred --------cCcCccEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCC---CCCCcccccHH
Confidence 0112346789999999999999999999999999999999999999999999998653 35999999999
Q ss_pred hhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccchH
Q 004235 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISS 379 (766)
Q Consensus 324 TrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~ 379 (766)
||||||||||||+|+|||||||+ +++||++||+||+||++|+|+|++|.++...
T Consensus 288 T~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 288 TRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp HHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred HHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCCC
Confidence 99999999999999999999997 5899999999999999999999999987653
No 8
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.9e-92 Score=759.92 Aligned_cols=321 Identities=40% Similarity=0.668 Sum_probs=298.1
Q ss_pred CCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeCceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEE
Q 004235 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVL 85 (766)
Q Consensus 6 ~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~ 85 (766)
..++|+|+|||||+++.|...++..|+.+.+ ...+.++.+.|+||+||+++++ |++||+.++.|+|+++|+|||+|||
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~~~~~~~~~f~FD~Vf~~~~s-Q~~Vy~~~~~plv~~~l~G~n~tif 82 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQG-EDTVVIASKPYAFDRVFQSSTS-QEQVYNDCAKKIVKDVLEGYNGTIF 82 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHHTCCBCCEEET-TTEEEETTEEEECSEEECTTCC-HHHHHHHHTHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEEEcCCCChhHhccCCeeEEEECC-CCeEEECCEEEECCeEeCCCCC-HHHHHHHHhhhhHHHHhCCCeEEEE
Confidence 3579999999999999999888887877665 4567788899999999999865 9999999999999999999999999
Q ss_pred eecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccccccCCCCC
Q 004235 86 AYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAG 165 (766)
Q Consensus 86 aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~ 165 (766)
|||||||||||||+|+..++...|||||++++||+.+.......+|.|+|||+|||||+|+|||++.
T Consensus 83 AYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~------------- 149 (325)
T 1bg2_A 83 AYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVS------------- 149 (325)
T ss_dssp EECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTT-------------
T ss_pred EECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCC-------------
Confidence 9999999999999998777778899999999999999887778899999999999999999999763
Q ss_pred ccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeecccCCC
Q 004235 166 KVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSP 245 (766)
Q Consensus 166 ~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~~~~~~ 245 (766)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+....
T Consensus 150 ------~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~----- 218 (325)
T 1bg2_A 150 ------KTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ----- 218 (325)
T ss_dssp ------CCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETT-----
T ss_pred ------CCCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecC-----
Confidence 247899999999999999999999999999999999999999999999999999999999999985421
Q ss_pred CCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCChhhh
Q 004235 246 DNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTR 325 (766)
Q Consensus 246 ~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSkLTr 325 (766)
......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++. .|||||||||||
T Consensus 219 ---------~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-----~hvPyRdSkLT~ 284 (325)
T 1bg2_A 219 ---------TEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-----TYVPYRDSKMTR 284 (325)
T ss_dssp ---------TCCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC-----SCCCGGGSHHHH
T ss_pred ---------CCcEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCC-----CCCcccccHHHH
Confidence 124578999999999999999999999999999999999999999999999763 499999999999
Q ss_pred hhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 326 LLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 326 LLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
||||||||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 285 lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 285 ILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp HGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred HHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999987
No 9
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=4.4e-92 Score=770.61 Aligned_cols=336 Identities=40% Similarity=0.625 Sum_probs=280.8
Q ss_pred CCCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee---------CceeEEcceeeCCCCCchhhhhhhhhHhHHHH
Q 004235 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (766)
Q Consensus 5 ~~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~---------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~ 75 (766)
...++|+|+|||||++..|...++..++.+.+....+.+ ..+.|+||+||+++++ |++||+.++.|+|++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~-Q~~Vy~~~~~plv~~ 83 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK-QIDVYRSVVCPILDE 83 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCC-HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCc-hhHHHHHHHHHhHHH
Confidence 345799999999999999998888888888776655544 2368999999999865 899999999999999
Q ss_pred HhCCcCEEEEeecccCCCCccccCCCCCC--------CCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeee
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTMGTGLRE--------GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRD 147 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm~g~~~~--------~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~D 147 (766)
+|+|||+||||||||||||||||+|+... ...+|||||++++||+.+.. ...+|.|+|||+|||||+|+|
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~D 161 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFD 161 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEE
T ss_pred HhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEeCceeee
Confidence 99999999999999999999999986542 23479999999999999875 467899999999999999999
Q ss_pred ccCCcccccccccCCCCCccccCCCCCceeeeCCC--CcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCC
Q 004235 148 LLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSN--GVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSR 225 (766)
Q Consensus 148 LL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~--~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSR 225 (766)
||+|... ....+.|++++. ++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||
T Consensus 162 LL~~~~~----------------~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSR 225 (359)
T 1x88_A 162 LLNPSSD----------------VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSR 225 (359)
T ss_dssp TTCTTSC----------------TTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hhccccc----------------ccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCC
Confidence 9987531 124688999984 7899999999999999999999999999999999999999999
Q ss_pred cEEEEEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhh
Q 004235 226 SHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG 305 (766)
Q Consensus 226 SH~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~ 305 (766)
||+||+|+|++..... +.......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+
T Consensus 226 SH~if~i~i~~~~~~~-----------~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~ 294 (359)
T 1x88_A 226 SHSVFSVTIHMKETTI-----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 294 (359)
T ss_dssp CEEEEEEEEEEEEECT-----------TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEEEecccC-----------CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999998754311 11234568999999999999999999999999999999999999999999998
Q ss_pred hhccCCCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 004235 306 DEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (766)
Q Consensus 306 ~~~~~~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d 375 (766)
+.. .|||||||||||||||||||||+|+|||||||+..+++||++||+||+||++|+|+|+||++
T Consensus 295 ~~~-----~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~~ 359 (359)
T 1x88_A 295 ERT-----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQK 359 (359)
T ss_dssp TTC-----SCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC----
T ss_pred cCC-----CCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCCC
Confidence 753 49999999999999999999999999999999999999999999999999999999999963
No 10
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=4e-91 Score=780.15 Aligned_cols=346 Identities=41% Similarity=0.608 Sum_probs=277.3
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCccee--------------------eCceeEEcceeeCCC------CCc
Q 004235 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ--------------------IGTHSFTFDHVYGNG------GSP 60 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~--------------------~~~~~F~FD~Vf~~~------~s~ 60 (766)
.++|+|+|||||+++.|...++..++.+.+....+. ...+.|+||+||+++ .++
T Consensus 37 ~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~as 116 (443)
T 2owm_A 37 GANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYAT 116 (443)
T ss_dssp CEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCCC
T ss_pred CCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCCC
Confidence 459999999999999998888776666654432221 124789999999864 245
Q ss_pred hhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhcc---ccceeeEEeeh
Q 004235 61 SSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR---HQMEFQLHVSF 137 (766)
Q Consensus 61 q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~---~~~~~~v~vS~ 137 (766)
|++||+.++.|+|+++|+|||+||||||||||||||||+|+ ...+|||||++++||..|.... ....|.|+|||
T Consensus 117 Q~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~---~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~ 193 (443)
T 2owm_A 117 QEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT---PDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSY 193 (443)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCC---TTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEE
T ss_pred HHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecC---CCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEE
Confidence 99999999999999999999999999999999999999885 3568999999999999998752 45789999999
Q ss_pred hhhhcceeeeccCCcccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccC
Q 004235 138 IEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGST 217 (766)
Q Consensus 138 ~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t 217 (766)
+|||||.|+|||+|.... .....+.|+|++.++++|.|++++.|.|++|++.+|..|..+|++++|
T Consensus 194 lEIYnE~i~DLL~~~~~~--------------~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T 259 (443)
T 2owm_A 194 FEVYNEHVRDLLAPVVPN--------------KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVAST 259 (443)
T ss_dssp EEEETTEEEETTSCCCSS--------------CCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSS
T ss_pred EEEECCEeeEccCccccC--------------CcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccC
Confidence 999999999999874311 112468999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHH
Q 004235 218 NMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLAL 297 (766)
Q Consensus 218 ~~N~~SSRSH~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aL 297 (766)
.||..|||||+||+|+|++...... ........|+|+|||||||||++++++.|.|++||.+||+||++|
T Consensus 260 ~~N~~SSRSH~Ifti~v~~~~~~~~----------~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aL 329 (443)
T 2owm_A 260 KMNDTSSRSHAVFTIMLKQIHHDLE----------TDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTL 329 (443)
T ss_dssp SSSCBCTTEEEEEEEEEEEEC-----------------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHH
T ss_pred cCCCccCCCeEEEEEEEEEeecccC----------CCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHH
Confidence 9999999999999999998542110 011235689999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccC-----------------CCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHH
Q 004235 298 GNVISALGDEKKR-----------------REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYA 360 (766)
Q Consensus 298 g~vI~aL~~~~~~-----------------~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa 360 (766)
|+||.+|++.... +...|||||||||||||||+|||||+|+|||||||+ +++||++||+||
T Consensus 330 g~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA 407 (443)
T 2owm_A 330 GRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYA 407 (443)
T ss_dssp HHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHH
Confidence 9999999976432 123599999999999999999999999999999997 599999999999
Q ss_pred HHhccccccccccc-ccchHHH
Q 004235 361 NRARNIQNKPVVNR-DLISSDM 381 (766)
Q Consensus 361 ~rar~Ikn~p~vn~-d~~~~~i 381 (766)
+||++|+|+|++|. |+.....
T Consensus 408 ~rak~I~n~~~vN~~d~~~~~~ 429 (443)
T 2owm_A 408 DQAKRIRTRAVVNQVDGVSAAE 429 (443)
T ss_dssp HHHTTCEECCCCCCC-------
T ss_pred HHHhhccccceecccCCccHHH
Confidence 99999999999999 7665543
No 11
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=2.5e-91 Score=761.71 Aligned_cols=334 Identities=48% Similarity=0.783 Sum_probs=276.1
Q ss_pred CCCCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceeeC-ceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCE
Q 004235 4 ASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNA 82 (766)
Q Consensus 4 ~~~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~~-~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~ 82 (766)
..+.++|+|+|||||++++|...++..|+.+.++.+++.++ .+.|+||+||+++++ |++||+.++.|+|+++|+|||+
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~-Q~~vy~~~~~plv~~~l~G~n~ 85 (344)
T 4a14_A 7 GAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAG-QEAVYQACVQPLLEAFFEGFNA 85 (344)
T ss_dssp --CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEETTTEEEECSEEECTTCC-HHHHHHHHTHHHHHHHHTTCCE
T ss_pred CccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEecccceEEEEEEEecCcc-hhHHHHHHHHHHHHHHHhhcCe
Confidence 34578999999999999999999999999999988888776 489999999999865 9999999999999999999999
Q ss_pred EEEeecccCCCCccccCCCCCC---CCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCcccccccc
Q 004235 83 TVLAYGQTGSGKTYTMGTGLRE---GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm~g~~~~---~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~ 159 (766)
||||||||||||||||+|+... ...+|||||++++||+.++.. ...+|.|+|||+|||||.|+|||++..
T Consensus 86 tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~------ 158 (344)
T 4a14_A 86 TVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLLEVGT------ 158 (344)
T ss_dssp EEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC-TTSEEEEEEEEEEEETTEEEETTSSCC------
T ss_pred eEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc-cceeeEEEEehhhhhHHHHHHHHHhcc------
Confidence 9999999999999999886432 467899999999999999874 567999999999999999999998643
Q ss_pred cCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeee
Q 004235 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (766)
Q Consensus 160 ~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~ 239 (766)
...++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++...
T Consensus 159 -----------~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~ 227 (344)
T 4a14_A 159 -----------ASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGR 227 (344)
T ss_dssp -----------CGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC-
T ss_pred -----------ccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCC
Confidence 124789999999999999999999999999999999999999999999999999999999999998653
Q ss_pred cccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCC
Q 004235 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (766)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyR 319 (766)
..... ..+.......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|++.++ +..|||||
T Consensus 228 ~~~~~------~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~--~~~hvPyR 299 (344)
T 4a14_A 228 APSRL------PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQR--RGSHIPYR 299 (344)
T ss_dssp -----------------CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTT--TTSCCCGG
T ss_pred CcccC------CCccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccc--cCCCCCcc
Confidence 22110 11123456789999999999999999999999999999999999999999999998653 35699999
Q ss_pred CChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhc
Q 004235 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (766)
Q Consensus 320 dSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar 364 (766)
||||||||||+|||||+|+|||||||+..+++||++||+||+|||
T Consensus 300 dSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 300 DSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp GCHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred hhhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 999999999999999999999999999999999999999999996
No 12
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=3.2e-91 Score=765.58 Aligned_cols=338 Identities=40% Similarity=0.617 Sum_probs=279.8
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceee------CceeEEcceeeCCCC-------CchhhhhhhhhHhHHH
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI------GTHSFTFDHVYGNGG-------SPSSAMFGECVAPLVD 74 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~------~~~~F~FD~Vf~~~~-------s~q~~vy~~~v~plV~ 74 (766)
++|+|+|||||++.+|...++..++.+.++...+.. ..+.|+||+||+++. ++|++||+.++.|+|+
T Consensus 4 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~ 83 (366)
T 2zfi_A 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQ 83 (366)
T ss_dssp CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHH
T ss_pred CCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHHH
Confidence 489999999999999998887767766654332221 247899999998861 3589999999999999
Q ss_pred HHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhcc-ccceeeEEeehhhhhcceeeeccCCcc
Q 004235 75 GLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVS 153 (766)
Q Consensus 75 ~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DLL~~~~ 153 (766)
++|+|||+||||||||||||||||+|+.. ...+|||||++++||..|.... ....|.|+|||+|||||.|+|||+|..
T Consensus 84 ~~l~G~N~tifAYGqTGSGKTyTm~G~~~-~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 84 HAFEGYNVCIFAYGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBCSG-GGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHhcCCeeEEEEeCCCCCCCceEeeCCCc-cCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999998642 3568999999999999998753 357899999999999999999998643
Q ss_pred cccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEE
Q 004235 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (766)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~ 233 (766)
..++.|+|++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+
T Consensus 163 ------------------~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~ 224 (366)
T 2zfi_A 163 ------------------KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNII 224 (366)
T ss_dssp ------------------CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEE
T ss_pred ------------------CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEE
Confidence 24689999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhcc----
Q 004235 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK---- 309 (766)
Q Consensus 234 v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~---- 309 (766)
|++...... ........|+|+|||||||||++++++.|.|++||.+||+||++||+||.+|++...
T Consensus 225 v~~~~~~~~----------~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~ 294 (366)
T 2zfi_A 225 FTQKRHDAE----------TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294 (366)
T ss_dssp EEEEEECTT----------TTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred EEEecccCC----------CCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhccccccc
Confidence 998653211 011234679999999999999999999999999999999999999999999998531
Q ss_pred ---CCCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 004235 310 ---RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNR 374 (766)
Q Consensus 310 ---~~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~ 374 (766)
.++..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||++|+|+|+++.
T Consensus 295 ~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp ---------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred ccccccCCcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 12357999999999999999999999999999999999999999999999999999999999875
No 13
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=6.7e-91 Score=764.16 Aligned_cols=334 Identities=42% Similarity=0.675 Sum_probs=278.5
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee------CceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCc
Q 004235 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~ 80 (766)
.++|+|+|||||++.+|...++..|+.+..+...+.. ..+.|+||+||+++++ |++||+.++.|+|+++|+||
T Consensus 22 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~-Q~~Vy~~~~~plv~~~l~G~ 100 (373)
T 2wbe_C 22 NQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESK-QCDVYSVVVSPLIEEVLNGY 100 (373)
T ss_dssp CEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCC-HHHHHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccc-hhHHHHHHHHHHHHHHhCCc
Confidence 4589999999999999998888888887755432221 2478999999999865 89999999999999999999
Q ss_pred CEEEEeecccCCCCccccCCCCC--------CCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCc
Q 004235 81 NATVLAYGQTGSGKTYTMGTGLR--------EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm~g~~~--------~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~ 152 (766)
|+||||||||||||||||+|+.. +...+|||||++++||+.+... ..+|.|+|||+|||||+|+|||++.
T Consensus 101 n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE~i~DLL~~~ 178 (373)
T 2wbe_C 101 NCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM--EVEYTMRISYLELYNEELCDLLSTD 178 (373)
T ss_dssp CEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC--CSCEEEEEEEEEEETTEEEESSCTT
T ss_pred eEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc--CceEEEEEEEEEEeCCeEEECCCCC
Confidence 99999999999999999998654 2357899999999999999863 5689999999999999999999864
Q ss_pred ccccccccCCCCCccccCCCCCceeeeCC--CCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEE
Q 004235 153 SVSKSVTANGHAGKVSISGRPPIQIRESS--NGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (766)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~--~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~If 230 (766)
. ...+.+++++ .++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||
T Consensus 179 ~------------------~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if 240 (373)
T 2wbe_C 179 D------------------TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVF 240 (373)
T ss_dssp S------------------CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEE
T ss_pred C------------------CCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEE
Confidence 2 2357788874 6789999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCC-CcchhhhhhhhhhhhHHHHHHHHhhhhcc
Q 004235 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSD-GLRLKEGIHINRGLLALGNVISALGDEKK 309 (766)
Q Consensus 231 ti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~-g~r~kE~~~IN~SL~aLg~vI~aL~~~~~ 309 (766)
+|+|++.... .+.......|+|+|||||||||++++++. |.|++|+.+||+||++||+||.+|++..
T Consensus 241 ~i~v~~~~~~-----------~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~- 308 (373)
T 2wbe_C 241 SIVVHIRENG-----------IEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA- 308 (373)
T ss_dssp EEEEEECTTC-----------TTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCS-
T ss_pred EEEEEEecCC-----------CCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 9999874210 11123456899999999999999999988 9999999999999999999999999753
Q ss_pred CCCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccccccccc
Q 004235 310 RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLI 377 (766)
Q Consensus 310 ~~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~ 377 (766)
.|||||||||||||||||||||+|+|||||||+..+++||++||+||+||++|+|+|+||++..
T Consensus 309 ----~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 309 ----PHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp ----SCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred ----CcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 4999999999999999999999999999999999999999999999999999999999998753
No 14
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2e-90 Score=756.39 Aligned_cols=323 Identities=41% Similarity=0.648 Sum_probs=260.6
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeCCCc--------cee----------------eCceeEEcceeeCCCCCchh
Q 004235 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNP--------QVQ----------------IGTHSFTFDHVYGNGGSPSS 62 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~--------~v~----------------~~~~~F~FD~Vf~~~~s~q~ 62 (766)
.++|+|+|||||++.+|...++..|+.+.++.. .+. ...+.|+||+||+++++ |+
T Consensus 9 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~-Q~ 87 (355)
T 3lre_A 9 CHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETST-QS 87 (355)
T ss_dssp ---CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCC-HH
T ss_pred cCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCC-hH
Confidence 469999999999999999999988887654321 111 12357999999999765 89
Q ss_pred hhhhhhhHhHHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhc
Q 004235 63 AMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILK 142 (766)
Q Consensus 63 ~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyn 142 (766)
+||+.++.|+|+++|+|||+||||||||||||||||+|+ ...+|||||++.+||..+........|.|.|||+||||
T Consensus 88 ~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~---~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYn 164 (355)
T 3lre_A 88 EVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS---ADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYN 164 (355)
T ss_dssp HHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccC---CCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEEC
Confidence 999999999999999999999999999999999999885 44689999999999999998777789999999999999
Q ss_pred ceeeeccCCcccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCC
Q 004235 143 EEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQ 222 (766)
Q Consensus 143 E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~ 222 (766)
|.|+|||++. .++.|+|++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..
T Consensus 165 E~i~DLL~~~--------------------~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~ 224 (355)
T 3lre_A 165 EQIRDLLVNS--------------------GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNAT 224 (355)
T ss_dssp TEEEESSSCC--------------------CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CB
T ss_pred CEEEECcCCC--------------------CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCC
Confidence 9999999752 37899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHH
Q 004235 223 SSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVIS 302 (766)
Q Consensus 223 SSRSH~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~ 302 (766)
|||||+||+|+|++..... ........|+|+|||||||||++++++.|.|++||.+||+||++||+||.
T Consensus 225 SSRSH~if~i~v~~~~~~~-----------~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~ 293 (355)
T 3lre_A 225 SSRSHAVFQIYLRQQDKTA-----------SINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVIN 293 (355)
T ss_dssp CTTCEEEEEEEEEEEETTS-----------CTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHH
T ss_pred CCCCcEEEEEEEEEecCCC-----------CCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865321 11223567999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 303 ALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 303 aL~~~~~~~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
+|+++++ +..|||||||||||||||||||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 294 aL~~~~~--~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 294 ALADSKR--KNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp HHC----------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHhccC--CCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9998653 3469999999999999999999999999999999999999999999999999987
No 15
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.4e-88 Score=732.06 Aligned_cols=321 Identities=37% Similarity=0.597 Sum_probs=274.9
Q ss_pred CCceEEEEEeCCCCcchhccC-CceEEEEeCCCcce-ee----CceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCc
Q 004235 7 NCSVKVAVHVRPLIGDERAQG-CKECVAVTHGNPQV-QI----GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~~-~~~~~~v~~~~~~v-~~----~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~ 80 (766)
.++|+|+|||||++..|...+ +..++.+.+....+ .+ ..+.|+||+||+++++ |++||+. +.|+|+++|+||
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~-Q~~Vy~~-v~~lv~~~l~G~ 80 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQAS-QQDVFQE-VQALVTSCIDGF 80 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCC-HHHHHTT-THHHHHHHHTTC
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCC-cHhHHHH-HHHHHHHHhCCC
Confidence 368999999999999986443 34456665544332 22 2368999999999865 8999998 699999999999
Q ss_pred CEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCccccccccc
Q 004235 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~ 160 (766)
|+||||||||||||||||+|+ ..++|||||++++||..++.......|.|+|||+|||||.|+|||++.+.
T Consensus 81 n~tifAYGqTGSGKTyTm~G~---~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~------ 151 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGT---AENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQ------ 151 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSC------
T ss_pred EEEEEeECCCCCCCcEEEecC---CCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccccc------
Confidence 999999999999999999885 35689999999999999988767789999999999999999999986431
Q ss_pred CCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEeeeec
Q 004235 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (766)
Q Consensus 161 ~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~~~~ 240 (766)
....+.+++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++....
T Consensus 152 ----------~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 221 (330)
T 2h58_A 152 ----------EKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS 221 (330)
T ss_dssp ----------CCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT
T ss_pred ----------ccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC
Confidence 1234666678999999999999999999999999999999999999999999999999999999875421
Q ss_pred ccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCC
Q 004235 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (766)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRd 320 (766)
......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++. .||||||
T Consensus 222 --------------~~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~-----~hvPyRd 282 (330)
T 2h58_A 222 --------------TGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-----GHVPFRN 282 (330)
T ss_dssp --------------TTEEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTC-----SCCCGGG
T ss_pred --------------CCcEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCC-----CCCcccc
Confidence 124578999999999999999999999999999999999999999999998653 4999999
Q ss_pred ChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccc
Q 004235 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQ 367 (766)
Q Consensus 321 SkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ik 367 (766)
|||||||||+|||||+|+|||||||+..+++||++||+||+||++|+
T Consensus 283 SkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 283 SKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp SHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999986
No 16
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=4.4e-88 Score=737.71 Aligned_cols=329 Identities=42% Similarity=0.608 Sum_probs=259.0
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCccee------------eCceeEEcceeeCC-------CCCchhhhhhhh
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ------------IGTHSFTFDHVYGN-------GGSPSSAMFGEC 68 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~------------~~~~~F~FD~Vf~~-------~~s~q~~vy~~~ 68 (766)
++|+|+|||||++.+|...++..++.+.++...+. ...+.|+||+||++ ..++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 37999999999999999887766666554322111 12468999999953 123589999999
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhc-cccceeeEEeehhhhhcceeee
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETL-RHQMEFQLHVSFIEILKEEVRD 147 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIynE~v~D 147 (766)
+.|+|+++|+|||+||||||||||||||||+|+ ...+|||||++++||..+... .....|.|+|||+|||||.|+|
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~---~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~D 157 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGT---ADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRD 157 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEE
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecC---CCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeE
Confidence 999999999999999999999999999999885 456899999999999999753 3457899999999999999999
Q ss_pred ccCCcccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcE
Q 004235 148 LLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSH 227 (766)
Q Consensus 148 LL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH 227 (766)
||+|.. ...++.|+|++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||
T Consensus 158 LL~~~~-----------------~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH 220 (354)
T 3gbj_A 158 LLDPKG-----------------SRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSH 220 (354)
T ss_dssp TTC-----------------------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSE
T ss_pred ccCCCC-----------------CCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCccc
Confidence 998743 135789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhh
Q 004235 228 AIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDE 307 (766)
Q Consensus 228 ~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~ 307 (766)
+||+|+|.+..... .........|+|+|||||||||++++++.|.|++||.+||+||++||+||.+|++.
T Consensus 221 ~if~i~v~~~~~~~----------~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~ 290 (354)
T 3gbj_A 221 AVFKITLTHTLYDV----------KSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQ 290 (354)
T ss_dssp EEEEEEEEEEEECT----------TSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEEeccc----------CCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhh
Confidence 99999998754311 11123457899999999999999999999999999999999999999999999975
Q ss_pred ccC-CCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 308 KKR-REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 308 ~~~-~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
... ++..|||||||||||||||+|||||+|+|||||||+..+++|||+||+||+||+.-
T Consensus 291 ~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 291 SAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp ------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred hcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 421 23569999999999999999999999999999999999999999999999999853
No 17
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=2.6e-88 Score=739.70 Aligned_cols=322 Identities=33% Similarity=0.496 Sum_probs=274.9
Q ss_pred ceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-------------CceeEEcceeeCCCCCchhhhhhhhhHhHHHH
Q 004235 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (766)
Q Consensus 9 ~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~-------------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~ 75 (766)
+|+|+|||||++..|...++..|+.+.++.. +.+ ..+.|+||+||+++++ |++||+.++.|+|++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~-i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~-Q~~Vy~~~~~plv~~ 78 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCT-LYIDEPRYKVDMTKYIERHEFIVDKVFDDTVD-NFTVYENTIKPLIID 78 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTE-EEEEEEEEETTTEEEEEEEEEECSEEECTTCC-HHHHHHHHTHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCE-EEEeCCccccccccccccceEEeeeEecCCCC-HHHHHHHHhhhhhhh
Confidence 5899999999999999888888887765432 221 2368999999999865 899999999999999
Q ss_pred HhC-CcCEEEEeecccCCCCccccCCCCC--CCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCc
Q 004235 76 LFQ-GYNATVLAYGQTGSGKTYTMGTGLR--EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (766)
Q Consensus 76 ~l~-G~N~tI~aYGqTGSGKTyTm~g~~~--~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~ 152 (766)
+|+ |||+||||||||||||||||+|+.. ....+|||||++.+||..++.......|.|+|||+|||||.|+|||++.
T Consensus 79 ~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 158 (360)
T 1ry6_A 79 LYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR 158 (360)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC-
T ss_pred hccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCC
Confidence 996 9999999999999999999988643 3467999999999999999887677889999999999999999999753
Q ss_pred ccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEE
Q 004235 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (766)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti 232 (766)
..+.+++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|
T Consensus 159 --------------------~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i 218 (360)
T 1ry6_A 159 --------------------KMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNI 218 (360)
T ss_dssp ------------------------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEE
T ss_pred --------------------ccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEE
Confidence 246678999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCC-cchhhhhhhhhhhhHHHHHHHHhhhhccCC
Q 004235 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDG-LRLKEGIHINRGLLALGNVISALGDEKKRR 311 (766)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g-~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~ 311 (766)
+|.+.. .....|+|+|||||||||++++++.| .+++||.+||+||++||+||.+|+.+.
T Consensus 219 ~v~~~~-----------------~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~--- 278 (360)
T 1ry6_A 219 DLKDIN-----------------KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK--- 278 (360)
T ss_dssp EEEETT-----------------TTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST---
T ss_pred EEEecc-----------------CCcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 998632 12467999999999999999999887 478999999999999999999997643
Q ss_pred CCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 004235 312 EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNR 374 (766)
Q Consensus 312 ~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~ 374 (766)
.|||||||||||||||||||||+|+|||||||+..+++||++||+||+||++|+|.|+.|.
T Consensus 279 --~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 279 --NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp --TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---------
T ss_pred --CCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 4999999999999999999999999999999999999999999999999999999766554
No 18
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=6.9e-88 Score=743.85 Aligned_cols=321 Identities=36% Similarity=0.545 Sum_probs=263.3
Q ss_pred CCCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-------------CceeEEcceeeCCCCCchhhhhhhhhHh
Q 004235 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (766)
Q Consensus 5 ~~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~-------------~~~~F~FD~Vf~~~~s~q~~vy~~~v~p 71 (766)
.++++|+|+|||||++..|...++..|+.+.++. .+.+ ..+.|+||+||+++++ |++||+.++.|
T Consensus 68 ~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~-~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~t-Q~~Vy~~~~~p 145 (410)
T 1v8k_A 68 IEEHRICVCVRKRPLNKQELAKKEIDVISVPSKC-LLLVHEPKLKVDLTKYLENQAFCFDFAFDETAS-NEVVYRFTARP 145 (410)
T ss_dssp TSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSS-EEEEEEEEECTTCCEEEEEEEEECSEEECTTCC-HHHHHHHTTHH
T ss_pred CCCCCeEEEEEeCCCChhHhhcCCccEEEECCCC-EEEEecCcccccccccccceEEeeeEEEecCCC-hhhhhHHHHHH
Confidence 3467999999999999999988888887765432 2221 2368999999999865 89999999999
Q ss_pred HHHHHhCCcCEEEEeecccCCCCccccCCCCC---CCCcccchHHHHHHHHHHHHhcc-ccceeeEEeehhhhhcceeee
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---EGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRD 147 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~---~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~D 147 (766)
+|+++|+|||+||||||||||||||||+|++. ....+|||||++++||..+.... ....|.|+|||+|||||.|+|
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~D 225 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFD 225 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEE
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEE
Confidence 99999999999999999999999999998643 23578999999999999987532 357899999999999999999
Q ss_pred ccCCcccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcE
Q 004235 148 LLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSH 227 (766)
Q Consensus 148 LL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH 227 (766)
||++. ..+.|++|+.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||
T Consensus 226 LL~~~--------------------~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH 285 (410)
T 1v8k_A 226 LLNKK--------------------AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSH 285 (410)
T ss_dssp TTTTT--------------------EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSE
T ss_pred CCCCC--------------------CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCce
Confidence 99752 3688999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccC-CCCcchhhhhhhhhhhhHHHHHHHHhhh
Q 004235 228 AIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTG-SDGLRLKEGIHINRGLLALGNVISALGD 306 (766)
Q Consensus 228 ~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-a~g~r~kE~~~IN~SL~aLg~vI~aL~~ 306 (766)
+||+|+|.+. ....|+|+|||||||||+++++ +.|.+++||.+||+||++||+||.+|+.
T Consensus 286 ~Ifti~v~~~-------------------~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~ 346 (410)
T 1v8k_A 286 ACFQILLRTK-------------------GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ 346 (410)
T ss_dssp EEEEEEEESS-------------------SSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEEeC-------------------CcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhc
Confidence 9999999862 1257999999999999998886 5678999999999999999999999986
Q ss_pred hccCCCCCcccCCCChhhhhhhhh-cCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccc
Q 004235 307 EKKRREGVHVPYRDSKLTRLLQDS-LGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (766)
Q Consensus 307 ~~~~~~~~~vPyRdSkLTrLLqds-LgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~ 371 (766)
+. .||||||||||+||||| |||||+|+|||||||+..+++|||+||+||+||++|..+|.
T Consensus 347 ~~-----~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 347 NK-----AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp -----------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred CC-----CCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 43 59999999999999999 69999999999999999999999999999999999998874
No 19
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=8.1e-88 Score=739.14 Aligned_cols=319 Identities=36% Similarity=0.545 Sum_probs=257.5
Q ss_pred CCCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-------------CceeEEcceeeCCCCCchhhhhhhhhHh
Q 004235 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (766)
Q Consensus 5 ~~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~-------------~~~~F~FD~Vf~~~~s~q~~vy~~~v~p 71 (766)
.++++|+|+|||||++..|...++..|+.+.... .+.+ ..+.|+||+||+++++ |++||+.++.|
T Consensus 48 ~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~s-Q~~Vy~~~~~p 125 (387)
T 2heh_A 48 IEEHRICVCVRKRPLNKQELAKKEIDVISIPSKC-LLLVHEPKLKVDLTKYLENQAFCFDFAFDETAS-NEVVYRFTARP 125 (387)
T ss_dssp CCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSS-EEEEEEEEECTTCCEEEEEEEEECSEEECTTCC-HHHHHHHTTHH
T ss_pred CCCCCeEEEEECCCCChHHhccCCceEEEECCCC-EEEEeCCCccccccccccccEEeeeEEEecCCC-ceeehhhhHHH
Confidence 3568999999999999999988888777764432 2221 2368999999999865 89999999999
Q ss_pred HHHHHhCCcCEEEEeecccCCCCccccCCCCC---CCCcccchHHHHHHHHHHHHhcc-ccceeeEEeehhhhhcceeee
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR---EGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRD 147 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~---~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~D 147 (766)
+|+++|+|||+||||||||||||||||+|++. ....+|||||++++||..+.... ....|.|+|||+|||||+|+|
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~D 205 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFD 205 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEE
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEE
Confidence 99999999999999999999999999998643 23578999999999999987532 357899999999999999999
Q ss_pred ccCCcccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcE
Q 004235 148 LLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSH 227 (766)
Q Consensus 148 LL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH 227 (766)
||++. ..+.|+||+.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||
T Consensus 206 LL~~~--------------------~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH 265 (387)
T 2heh_A 206 LLNKK--------------------AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSH 265 (387)
T ss_dssp TTTTT--------------------EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSE
T ss_pred CCCCC--------------------ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccce
Confidence 99753 3588999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccC-CCCcchhhhhhhhhhhhHHHHHHHHhhh
Q 004235 228 AIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTG-SDGLRLKEGIHINRGLLALGNVISALGD 306 (766)
Q Consensus 228 ~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~-a~g~r~kE~~~IN~SL~aLg~vI~aL~~ 306 (766)
+||+|+|++. ....|+|+|||||||||+++++ +.|.+++|+.+||+||++||+||.+|++
T Consensus 266 ~Ifti~v~~~-------------------~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~ 326 (387)
T 2heh_A 266 ACFQIILRAK-------------------GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ 326 (387)
T ss_dssp EEEEEEEESS-------------------SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEEC-------------------CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhc
Confidence 9999999862 1257999999999999998886 5678899999999999999999999986
Q ss_pred hccCCCCCcccCCCChhhhhhhhh-cCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccc
Q 004235 307 EKKRREGVHVPYRDSKLTRLLQDS-LGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNK 369 (766)
Q Consensus 307 ~~~~~~~~~vPyRdSkLTrLLqds-LgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~ 369 (766)
+. .|||||||||||||||| |||||+|+|||||||+..+++||++||+||+||++|++.
T Consensus 327 ~~-----~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 327 NK-----AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp TC-----SCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CC-----CCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 43 59999999999999999 699999999999999999999999999999999999875
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=3.3e-87 Score=730.06 Aligned_cols=332 Identities=32% Similarity=0.489 Sum_probs=262.1
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCC---Ccceee-------CceeEEcceeeCCCCCchhhhhhhhhHhHHHHHh
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHG---NPQVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~---~~~v~~-------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l 77 (766)
++|+|+|||||++..|...++..++.+..+ ...+.+ ..+.|+||+||+++++ |++||+. +.|+|+++|
T Consensus 5 gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~-Q~~vf~~-v~~lv~~~l 82 (349)
T 3t0q_A 5 GNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHT-NKEIFEE-IRQLVQSSL 82 (349)
T ss_dssp CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCC-HHHHHHH-HHHHHHGGG
T ss_pred CCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCcc-HHHHHHH-HHHHHHHHH
Confidence 699999999999999988777666543322 122332 1368999999999865 8999997 679999999
Q ss_pred CCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhcc-ccceeeEEeehhhhhcceeeeccCCccccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DLL~~~~~~~ 156 (766)
+|||+||||||||||||||||+|+ .+|||||++++||+.+.... ..+.|.|+|||+|||||.|+|||++.....
T Consensus 83 ~G~n~tifAYGqTGSGKTyTm~g~-----~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 157 (349)
T 3t0q_A 83 DGYNVCIFAYGQTGSGKTYTMLNA-----GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHD 157 (349)
T ss_dssp TTCEEEEEEECSTTSSHHHHHHST-----TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC------
T ss_pred CCcceeEEEeCCCCCCCceEeCCC-----CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccc
Confidence 999999999999999999999874 36999999999999998753 357899999999999999999998754211
Q ss_pred ccccCCCCCccccCCCCCceeeeCC-CCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEE
Q 004235 157 SVTANGHAGKVSISGRPPIQIRESS-NGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (766)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~ire~~-~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~ 235 (766)
.. ........+.|++++ .++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|+
T Consensus 158 ~~--------~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~ 229 (349)
T 3t0q_A 158 NI--------DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHIN 229 (349)
T ss_dssp -----------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEE
T ss_pred cc--------ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEE
Confidence 00 001123467788765 568999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCc
Q 004235 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVH 315 (766)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~ 315 (766)
+.... ......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|++..++ ..|
T Consensus 230 ~~~~~--------------~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~--~~h 293 (349)
T 3t0q_A 230 GRNLH--------------TGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAG--KRY 293 (349)
T ss_dssp EEETT--------------TCCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGG--GSC
T ss_pred EEecC--------------CCCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCC--CCc
Confidence 86431 12356799999999999999999999999999999999999999999999876532 359
Q ss_pred ccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccccccc
Q 004235 316 VPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKP 370 (766)
Q Consensus 316 vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p 370 (766)
||||||||||||||||||||+|+|||||||+..+++||++||+||+|+++|+..|
T Consensus 294 iPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 294 IPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp CCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred CCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999999999999999999999999999998654
No 21
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-87 Score=734.12 Aligned_cols=327 Identities=34% Similarity=0.516 Sum_probs=260.0
Q ss_pred CCceEEEEEeCCCCcchhcc----CCceEEEEeCCCc-ce-e----eCceeEEcceeeCCCCCchhhhhhhhhHhHHHHH
Q 004235 7 NCSVKVAVHVRPLIGDERAQ----GCKECVAVTHGNP-QV-Q----IGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~----~~~~~~~v~~~~~-~v-~----~~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~ 76 (766)
.++|+|+|||||+...|... ....++.+..... .. . ...++|+||+||++ ++ |++||+.++.|+|+++
T Consensus 23 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~-~s-Q~~Vy~~~~~plv~~~ 100 (359)
T 3nwn_A 23 RKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLHD-AS-QDLVYETVAKDVVSQA 100 (359)
T ss_dssp -CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEES-CC-HHHHHHHHTHHHHHHH
T ss_pred CCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCCC-CC-HHHHHHHHHHHHHHHH
Confidence 46899999999998776421 1223343332211 10 0 12368999999974 54 8999999999999999
Q ss_pred hCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccCCccccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~ 156 (766)
|+|||+||||||||||||||||+|+..+...+|||||++++||+.+.. .....|.|+|||+|||||+|+|||++.+...
T Consensus 101 l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 179 (359)
T 3nwn_A 101 LDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEE-RPTHAITVRVSYLEIYNESLFDLLSTLPYVG 179 (359)
T ss_dssp HTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHT-CTTSCEEEEEEEEEEETTEEEETTSSSTTSC
T ss_pred hCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhc-CCCCcEEEEEEEEEEeccccccccccccccc
Confidence 999999999999999999999999876777899999999999999987 4567899999999999999999998644211
Q ss_pred ccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEe
Q 004235 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (766)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q 236 (766)
....++.+++++. |++|.|++++.|.+++|++.+|..|..+|.+++|.||..|||||+||+|+|.+
T Consensus 180 -------------~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~ 245 (359)
T 3nwn_A 180 -------------PSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEA 245 (359)
T ss_dssp -------------TTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEE
T ss_pred -------------cccccceEEecCC-ceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEe
Confidence 1234677888875 69999999999999999999999999999999999999999999999999987
Q ss_pred eeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCcc
Q 004235 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (766)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~v 316 (766)
.... ..+.....|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++++ .||
T Consensus 246 ~~~~------------~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~----~hV 309 (359)
T 3nwn_A 246 HSRT------------LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKR----DHI 309 (359)
T ss_dssp C-------------------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC---------C
T ss_pred eccc------------ccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCC----CcC
Confidence 5331 112345789999999999999999999999999999999999999999999987543 599
Q ss_pred cCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 317 PyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
|||||||||||||||||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 310 PYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 310 PFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp CGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999987
No 22
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5e-87 Score=732.72 Aligned_cols=324 Identities=36% Similarity=0.541 Sum_probs=248.6
Q ss_pred CCceEEEEEeCCCCcchhccCCceEEEEeC-------CCccee----------e-------CceeEEcceeeCCCCCchh
Q 004235 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTH-------GNPQVQ----------I-------GTHSFTFDHVYGNGGSPSS 62 (766)
Q Consensus 7 ~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~-------~~~~v~----------~-------~~~~F~FD~Vf~~~~s~q~ 62 (766)
.++|+|+|||||+++.|...++. |+.+.+ +...+. + ..+.|+||+||+++++ |+
T Consensus 21 ~~~irV~vRvRP~~~~E~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~-Q~ 98 (376)
T 2rep_A 21 KGNIRVFCRVRPVLPGEPTPPPG-LLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSG-QD 98 (376)
T ss_dssp --CEEEEEEECCCCTTSCCCCGG-GSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCC-HH
T ss_pred CCCeEEEEEcCCCChhhcccCCc-eEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCccc-ch
Confidence 36999999999999999766432 111111 111111 1 1368999999999865 99
Q ss_pred hhhhhhhHhHHHHHhCCcCEEEEeecccCCCCccccCCCCC-CCCcccchHHHHHHHHHHHHhcc-ccceeeEEeehhhh
Q 004235 63 AMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLR-EGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEI 140 (766)
Q Consensus 63 ~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~-~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EI 140 (766)
+||+. +.|+|+++|+|||+||||||||||||||||+|+.. +...+|||||++++||+.+.... ..+.|.|+|||+||
T Consensus 99 ~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EI 177 (376)
T 2rep_A 99 EVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEI 177 (376)
T ss_dssp HHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEE
T ss_pred hhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEE
Confidence 99998 57999999999999999999999999999998754 34578999999999999998753 35789999999999
Q ss_pred hcceeeeccCCcccccccccCCCCCccccCCCCCceeeeC--CCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCC
Q 004235 141 LKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRES--SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTN 218 (766)
Q Consensus 141 ynE~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~ire~--~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~ 218 (766)
|||.|+|||++.... .....+.|+++ +.++++|.|++++.|.|++|++.+|..|..+|++++|.
T Consensus 178 YnE~i~DLL~~~~~~--------------~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~ 243 (376)
T 2rep_A 178 YNETVRDLLATGTRK--------------GQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTA 243 (376)
T ss_dssp ETTEEEETTCCC----------------------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC--
T ss_pred ECCEeeEcccccccc--------------ccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhccccccc
Confidence 999999999874210 11246788888 67899999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCC----cchhhhhhhhhhh
Q 004235 219 MNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDG----LRLKEGIHINRGL 294 (766)
Q Consensus 219 ~N~~SSRSH~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g----~r~kE~~~IN~SL 294 (766)
||..|||||+||+|+|++.... ......|+|+|||||||||++++++.| .|++|+.+||+||
T Consensus 244 ~N~~SSRSH~Ifti~v~~~~~~--------------~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL 309 (376)
T 2rep_A 244 QNERSSRSHSVFQLQISGEHSS--------------RGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSL 309 (376)
T ss_dssp ---CGGGSEEEEEEEEEEEESS--------------SCCEEEEEEEEEECCCCC------------------------CH
T ss_pred CCCCCCCceEEEEEEEEEEecC--------------CCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHH
Confidence 9999999999999999975421 123467999999999999999999999 9999999999999
Q ss_pred hHHHHHHHHhhhhccCCCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 295 LALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 295 ~aLg~vI~aL~~~~~~~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
++||+||.+|+++. .|||||||||||||||||||||+|+|||||||++.+++|||+||+||+|++++
T Consensus 310 ~aLg~vI~aL~~~~-----~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 310 STLGLVIMALSNKE-----SHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHHHHHHHHTTC-----SCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCC-----CccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999998753 49999999999999999999999999999999999999999999999999864
No 23
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=8.8e-87 Score=725.59 Aligned_cols=328 Identities=35% Similarity=0.535 Sum_probs=264.4
Q ss_pred CceEEEEEeCCCCc-chhccCCceEEEEeC-----CCcceee-------CceeEEcceeeCCCCCchhhhhhhhhHhHHH
Q 004235 8 CSVKVAVHVRPLIG-DERAQGCKECVAVTH-----GNPQVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVD 74 (766)
Q Consensus 8 ~~V~V~vRvRP~~~-~E~~~~~~~~~~v~~-----~~~~v~~-------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~ 74 (766)
++|+|+|||||++. .|. .+..++.+.. +...+.+ ..+.|+||+||+++++ |++||+. +.|+|+
T Consensus 3 ~nIrV~vRvRP~~~~~e~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~-Q~~Vy~~-v~~lv~ 78 (347)
T 1f9v_A 3 GNIRVYCRIRPALKNLEN--SDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDT-NVDVFKE-VGQLVQ 78 (347)
T ss_dssp CEEEEEEEECCCCTTTCC--CTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCC-HHHHHHH-HHHHHG
T ss_pred CCeEEEEEeCCCCccccc--CCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCC-HHHHHHH-HHHHHH
Confidence 68999999999987 442 3334444432 1122332 1378999999999865 8999998 679999
Q ss_pred HHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhcc-ccceeeEEeehhhhhcceeeeccCCcc
Q 004235 75 GLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVS 153 (766)
Q Consensus 75 ~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DLL~~~~ 153 (766)
++|+|||+||||||||||||||||+|+ .+|||||++++||+.|.... ..+.|.|+|||+|||||+|+|||++..
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G~-----~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 153 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLNP-----GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDN 153 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHST-----TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC---
T ss_pred HhcCCceeEEEEECCCCCCCcEeccCC-----CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCcc
Confidence 999999999999999999999999874 47999999999999998754 357899999999999999999998754
Q ss_pred cccccccCCCCCccccCCCCCceeeeC-CCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEE
Q 004235 154 VSKSVTANGHAGKVSISGRPPIQIRES-SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (766)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~ire~-~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti 232 (766)
..... ......+.|+++ +.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|
T Consensus 154 ~~~~~----------~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 223 (347)
T 1f9v_A 154 NNKED----------TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFII 223 (347)
T ss_dssp --------------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEE
T ss_pred ccccc----------cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEE
Confidence 21100 011235678876 4688999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCC
Q 004235 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (766)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~ 312 (766)
+|.+.... ......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|++... .
T Consensus 224 ~v~~~~~~--------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~--~ 287 (347)
T 1f9v_A 224 HLSGSNAK--------------TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS--T 287 (347)
T ss_dssp EEEEECC----------------CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC----
T ss_pred EEEEecCC--------------CCceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccC--C
Confidence 99875321 1235689999999999999999999999999999999999999999999987653 2
Q ss_pred CCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccccccc
Q 004235 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKP 370 (766)
Q Consensus 313 ~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p 370 (766)
..|||||||||||||||||||||+|+|||||||+..+++||++||+||+||++|+..|
T Consensus 288 ~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~ 345 (347)
T 1f9v_A 288 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 345 (347)
T ss_dssp -CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC-
T ss_pred CCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCC
Confidence 3699999999999999999999999999999999999999999999999999999876
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.2e-86 Score=726.13 Aligned_cols=323 Identities=34% Similarity=0.527 Sum_probs=259.6
Q ss_pred CCCceEEEEEeCCCCcchhccCCceEEEEeCCCcceee---------------CceeEEcceeeCCCCCchhhhhhhhhH
Q 004235 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------------GTHSFTFDHVYGNGGSPSSAMFGECVA 70 (766)
Q Consensus 6 ~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~---------------~~~~F~FD~Vf~~~~s~q~~vy~~~v~ 70 (766)
..++|+|+|||||+...+. .++.+.++...+.+ ..++|+||+||+ +++ |++||+.++.
T Consensus 21 ~~g~IrV~vRvRP~~~~~~-----~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~s-Q~~Vy~~~~~ 93 (358)
T 2nr8_A 21 TRKKVHAFVRVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DAS-QDLVYETVAK 93 (358)
T ss_dssp --CCEEEEEEECCCSSCCT-----TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCC-HHHHHHHHTH
T ss_pred CCCCeEEEEEcCCCCCCcc-----ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcC-HHHHHHHHHH
Confidence 3479999999999976432 23333333222221 236899999995 454 8999999999
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhccccceeeEEeehhhhhcceeeeccC
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLD 150 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~ 150 (766)
|+|+++|+|||+||||||||||||||||+|+..+...+|||||++++||+.++.. ....|.|+|||+|||||.|+|||+
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC-TTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhc-CCceEEEEEEEEEEeCCeeeECcC
Confidence 9999999999999999999999999999997666667999999999999999874 467899999999999999999998
Q ss_pred CcccccccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEE
Q 004235 151 SVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (766)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~If 230 (766)
+.+... ....++.|++++ .|++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||
T Consensus 173 ~~~~~~-------------~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If 238 (358)
T 2nr8_A 173 TLPYVG-------------PSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIF 238 (358)
T ss_dssp SSTTSC-------------TTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred CccccC-------------ccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEE
Confidence 744210 123578999998 679999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccC
Q 004235 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKR 310 (766)
Q Consensus 231 ti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~ 310 (766)
+|+|++..... .+.....|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++++
T Consensus 239 ~i~v~~~~~~~------------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~- 305 (358)
T 2nr8_A 239 TIYLEAHSRTL------------SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKR- 305 (358)
T ss_dssp EEEEEEC-------------------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC----
T ss_pred EEEEEEEeccC------------CCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 99999754211 12345689999999999999999999999999999999999999999999987542
Q ss_pred CCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 311 REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 311 ~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
.||||||||||+||||+|||||+|+|||||||+..+++|||+||+||+|||+|
T Consensus 306 ---~hiPyRdSkLT~LLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 306 ---DHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp -----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred ---CcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 59999999999999999999999999999999999999999999999999987
No 25
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.3e-86 Score=722.28 Aligned_cols=315 Identities=33% Similarity=0.535 Sum_probs=249.3
Q ss_pred CCCCceEEEEEeCCCCcchhccCCceEEEEeC--CCcceeeCceeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCE
Q 004235 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTH--GNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNA 82 (766)
Q Consensus 5 ~~~~~V~V~vRvRP~~~~E~~~~~~~~~~v~~--~~~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~ 82 (766)
.+.++|+|+|||||+++.| ..++..++.+.+ ....+.+..+.|+||+||+++++ |++||+.++.|+|+++|+|||+
T Consensus 19 ~~~~~VrV~vRvRP~~~~e-~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~Vf~~~~s-Q~~Vy~~~~~plv~~~l~G~N~ 96 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFL-GRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATIS-QDEMYQALILPLVDKLLEGFQC 96 (344)
T ss_dssp CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEETTEEEECSEEECTTCC-HHHHHHHHTHHHHHHHHHTCCE
T ss_pred CCCCCeEEEEECCCCCccc-ccCCceEEEecCCCCCceEEecCcEEEcceEECCCCC-HHHHHHhhccchhhHhhCCCce
Confidence 3457999999999999887 455666777665 34456677899999999999865 8999999999999999999999
Q ss_pred EEEeecccCCCCccccCCCCC---CCCcccchHHHHHHHHHHHHhcccc--ceeeEEeehhhhhcceeeeccCCcccccc
Q 004235 83 TVLAYGQTGSGKTYTMGTGLR---EGFQTGLIPQVMNALFNKIETLRHQ--MEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm~g~~~---~~~~~Giipr~~~~LF~~i~~~~~~--~~~~v~vS~~EIynE~v~DLL~~~~~~~~ 157 (766)
||||||||||||||||+|+.. ....+|||||++++||+.|...... ..|.|+|||+|||||+|+|||++....
T Consensus 97 tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-- 174 (344)
T 3dc4_A 97 TALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM-- 174 (344)
T ss_dssp EEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTS--
T ss_pred EEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCC--
Confidence 999999999999999987653 2467899999999999999875433 469999999999999999999864310
Q ss_pred cccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEee
Q 004235 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (766)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~ 237 (766)
+.+ ...+.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.
T Consensus 175 ---------------~~~--------~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~ 231 (344)
T 3dc4_A 175 ---------------PMV--------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK 231 (344)
T ss_dssp ---------------BCC--------SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS
T ss_pred ---------------ccc--------cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec
Confidence 010 112358999999999999999999999999999999999999999999999752
Q ss_pred eecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCccc
Q 004235 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (766)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vP 317 (766)
...|+|+|||||||||++++++.|.|++||.+||+||++||+||.+|+++. .|||
T Consensus 232 --------------------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-----~hiP 286 (344)
T 3dc4_A 232 --------------------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-----TVIP 286 (344)
T ss_dssp --------------------SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-----SSCC
T ss_pred --------------------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-----CcCC
Confidence 146899999999999999999999999999999999999999999998754 4999
Q ss_pred CCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccccccc
Q 004235 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (766)
Q Consensus 318 yRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p~ 371 (766)
||||||||||||||||||+|+|||||||+..+++|||+||+||+||+.....|.
T Consensus 287 yRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 287 YRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp GGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred ccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999887664
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-85 Score=726.78 Aligned_cols=330 Identities=36% Similarity=0.542 Sum_probs=268.5
Q ss_pred CceEEEEEeCCCCcc-hhccCCceEEEEeCCC---cceee-------CceeEEcceeeCCCCCchhhhhhhhhHhHHHHH
Q 004235 8 CSVKVAVHVRPLIGD-ERAQGCKECVAVTHGN---PQVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~-E~~~~~~~~~~v~~~~---~~v~~-------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~ 76 (766)
++|+|+|||||+... |....+..++...... ..+.+ ..+.|+||+||+++++ |++||+. +.|+|+++
T Consensus 59 gnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~-Q~~Vf~~-v~~lv~~~ 136 (403)
T 4etp_A 59 GNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDT-NVDVFKE-VGQLVQSS 136 (403)
T ss_dssp CSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCC-HHHHHHH-HHHHHHHH
T ss_pred CCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCc-hHHHHHH-HHHHHHHH
Confidence 689999999999887 4333333233211111 11211 1368999999999865 8999987 67999999
Q ss_pred hCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhcc-ccceeeEEeehhhhhcceeeeccCCcccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DLL~~~~~~ 155 (766)
|+|||+||||||||||||||||+|+ .+|||||++++||..|.... ..+.|.|+|||+|||||.|+|||++....
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM~g~-----~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 211 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTMLNP-----GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNN 211 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHHHCT-----TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC----
T ss_pred hCCcceEEEEECCCCCCCceEeCCC-----CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccc
Confidence 9999999999999999999999874 36999999999999998743 35789999999999999999999875421
Q ss_pred cccccCCCCCccccCCCCCceeeeCC-CCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEE
Q 004235 156 KSVTANGHAGKVSISGRPPIQIRESS-NGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (766)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~ire~~-~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v 234 (766)
... ......+.|++++ .++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 212 ~~~----------~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 281 (403)
T 4etp_A 212 KED----------TSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 281 (403)
T ss_dssp --------------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEE
T ss_pred ccc----------cccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEE
Confidence 110 0112356677665 57899999999999999999999999999999999999999999999999999
Q ss_pred EeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCC
Q 004235 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (766)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~ 314 (766)
.+.... ......|+|+|||||||||++++++.|.|++||.+||+||++||+||.+|++... ...
T Consensus 282 ~~~~~~--------------~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~--~~~ 345 (403)
T 4etp_A 282 SGSNAK--------------TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDS--TKR 345 (403)
T ss_dssp EEEETT--------------TCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCT--TTS
T ss_pred EEeecC--------------CCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCC
Confidence 875421 1234679999999999999999999999999999999999999999999987643 235
Q ss_pred cccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccccccc
Q 004235 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKP 370 (766)
Q Consensus 315 ~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p 370 (766)
||||||||||+||||||||||+|+|||||||+..+++||++||+||+|++.|+..|
T Consensus 346 hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~ 401 (403)
T 4etp_A 346 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401 (403)
T ss_dssp CCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred cCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999876
No 27
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=7.5e-85 Score=723.39 Aligned_cols=316 Identities=36% Similarity=0.555 Sum_probs=261.0
Q ss_pred CceEEEEEeCCCCcchhccCCceEEEEeCCCcceee-----------CceeEEcceeeCCCCCchhhhhhhhhHhHHHHH
Q 004235 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (766)
Q Consensus 8 ~~V~V~vRvRP~~~~E~~~~~~~~~~v~~~~~~v~~-----------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~ 76 (766)
++|+|+|||||+++.|...++ |+.+.++...+.+ +.+.|+||+||+++++ |++||+. +.|+|+++
T Consensus 59 gnIrV~vRvRP~~~~E~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~-Q~~Vf~~-v~plv~~~ 134 (412)
T 3u06_A 59 DNIRVFCRIRPPLESEENRMC--CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS-QSDIFEM-VSPLIQSA 134 (412)
T ss_dssp CSEEEEEEECCCCGGGTTSCB--CEEEEEETTEEEEECCC-------CCCEEECSEEECTTCC-HHHHHTT-THHHHHHH
T ss_pred CCEEEEEEcCCCCchhccCcc--eEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCC-HHHHHHH-HHHHHHHH
Confidence 699999999999999975553 3322222222222 2468999999999865 8999985 78999999
Q ss_pred hCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhcc-ccceeeEEeehhhhhcceeeeccCCcccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DLL~~~~~~ 155 (766)
|+|||+||||||||||||||||+|. +..+|||||++++||+.|.... ..++|.|+|||+|||||.|+|||++..
T Consensus 135 l~G~n~tifAYGqTGSGKTyTM~G~---~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~-- 209 (412)
T 3u06_A 135 LDGYNICIFAYGQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ-- 209 (412)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTEE---TTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSC--
T ss_pred HCCCceEEEEecCCCCCCeeEecCC---CCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCC--
Confidence 9999999999999999999999884 4568999999999999998743 357999999999999999999997643
Q ss_pred cccccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEE
Q 004235 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (766)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~ 235 (766)
....+.+.+++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.
T Consensus 210 ---------------~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~ 274 (412)
T 3u06_A 210 ---------------KDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI 274 (412)
T ss_dssp ---------------CCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEE
T ss_pred ---------------CCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEE
Confidence 12346666888999999999999999999999999999999999999999999999999999998
Q ss_pred eeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCc
Q 004235 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVH 315 (766)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~ 315 (766)
+.... ......|+|+|||||||||.+ .|.|++||.+||+||++||+||.+|++.. .|
T Consensus 275 ~~~~~--------------~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~-----~h 331 (412)
T 3u06_A 275 GRHAE--------------KQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQ-----DH 331 (412)
T ss_dssp EEETT--------------TTEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTC-----SC
T ss_pred EEeCC--------------CCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccC-----CC
Confidence 75421 124567999999999999985 46899999999999999999999998753 49
Q ss_pred ccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccccccc
Q 004235 316 VPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKP 370 (766)
Q Consensus 316 vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p 370 (766)
||||||||||||||||||||+|+|||||||++.+++||++||+||+|++.|+..+
T Consensus 332 iPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~ 386 (412)
T 3u06_A 332 IPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTK 386 (412)
T ss_dssp CCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC--
T ss_pred CCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999999998544
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.2e-77 Score=715.84 Aligned_cols=319 Identities=35% Similarity=0.558 Sum_probs=246.8
Q ss_pred CceEEEEEeC----CCCcchhccCCceEEEEeCC------Ccceee--------CceeEEcceeeCCCCCchhhhhhhhh
Q 004235 8 CSVKVAVHVR----PLIGDERAQGCKECVAVTHG------NPQVQI--------GTHSFTFDHVYGNGGSPSSAMFGECV 69 (766)
Q Consensus 8 ~~V~V~vRvR----P~~~~E~~~~~~~~~~v~~~------~~~v~~--------~~~~F~FD~Vf~~~~s~q~~vy~~~v 69 (766)
..++|+|||| |....|...|......-.|+ ..++.+ ..++|+||+||+++++ |++||+. +
T Consensus 374 ~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~-q~~v~~~-~ 451 (715)
T 4h1g_A 374 GNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQS-NDLVFEE-L 451 (715)
T ss_dssp CSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCC-HHHHGGG-T
T ss_pred hcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCC-HHHHHHH-H
Confidence 4799999999 65555554443322221221 223332 2479999999999865 8999986 5
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHhcc-ccceeeEEeehhhhhcceeeec
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDL 148 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DL 148 (766)
.|+|+++|+|||+||||||||||||||||+|+ .+|||||++++||+.|+... ....|.|+|||+|||||.|+||
T Consensus 452 ~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~-----~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DL 526 (715)
T 4h1g_A 452 SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP-----TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDL 526 (715)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT-----TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEES
T ss_pred HHHHHHHhCCceEEEEccCCCCCchhhccCCC-----CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEEC
Confidence 79999999999999999999999999999773 57999999999999998753 3468999999999999999999
Q ss_pred cCCcccccccccCCCCCccccCCCCCceeee-CCCCcEEEcCceEEEcCCHHHHHHHHHhcccCcccccCCCCCCCCCcE
Q 004235 149 LDSVSVSKSVTANGHAGKVSISGRPPIQIRE-SSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSH 227 (766)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~~~~~~~~l~ire-~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH 227 (766)
|+|... ....+.+++ +..|+++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||
T Consensus 527 l~~~~~----------------~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH 590 (715)
T 4h1g_A 527 LNPKID----------------PNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSH 590 (715)
T ss_dssp SSCCCC----------------TTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSE
T ss_pred CCCCCC----------------CCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCcccccc
Confidence 987431 123455665 456779999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhh
Q 004235 228 AIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDE 307 (766)
Q Consensus 228 ~Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~ 307 (766)
+||+|+|++.... ......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+..
T Consensus 591 ~i~~i~~~~~~~~--------------~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~ 656 (715)
T 4h1g_A 591 SIFIIDLQGYNSL--------------TKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLK 656 (715)
T ss_dssp EEEEEEEEEEETT--------------TCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEEecC--------------CCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999886431 12457899999999999999999999999999999999999999999999864
Q ss_pred ccCCCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhcccc
Q 004235 308 KKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQ 367 (766)
Q Consensus 308 ~~~~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ik 367 (766)
. ..|||||||||||||||||||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus 657 ~----~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 657 D----GSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp S----CCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred C----CCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 3 3599999999999999999999999999999999999999999999999999997
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.97 E-value=5.6e-32 Score=240.40 Aligned_cols=98 Identities=46% Similarity=0.723 Sum_probs=88.5
Q ss_pred hhhhhhhhhHHHHHHHHhhhhccCCCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccc
Q 004235 287 GIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (766)
Q Consensus 287 ~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~I 366 (766)
+.+||+||++||+||.+|+++. ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~----~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i 76 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGT----KTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTI 76 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTC----CSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHHHHHHhcC----CCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999863 359999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchHH-HHHHHHHH
Q 004235 367 QNKPVVNRDLISSD-MQKLRQQL 388 (766)
Q Consensus 367 kn~p~vn~d~~~~~-i~~L~~~i 388 (766)
+|+|++|.++...+ ++++++|+
T Consensus 77 ~~~~~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 77 KNTVSVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp EEEECCEEECCHHHHHHHHHHHH
T ss_pred cCcceeccCCCHHHHHHHHHHhh
Confidence 99999999887754 44566554
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=4.5e-30 Score=235.95 Aligned_cols=87 Identities=52% Similarity=0.819 Sum_probs=81.7
Q ss_pred hhhhhHHHHHHHHhhhhccCCCCCcccCCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccccccc
Q 004235 291 NRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKP 370 (766)
Q Consensus 291 N~SL~aLg~vI~aL~~~~~~~~~~~vPyRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p 370 (766)
|+||++||+||.+|+++.+ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|+|+|
T Consensus 1 N~SL~~Lg~vi~aL~~~~~----~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~ 76 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTK----THVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 76 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCC----SSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHHhCCC----CCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCc
Confidence 8999999999999998642 599999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHH
Q 004235 371 VVNRDLISSDM 381 (766)
Q Consensus 371 ~vn~d~~~~~i 381 (766)
++|.++...++
T Consensus 77 ~~n~~~~~~~l 87 (117)
T 3kin_B 77 SVNLELTAEEW 87 (117)
T ss_dssp CCCBCCCHHHH
T ss_pred eecCcCCHHHH
Confidence 99998876544
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.1e-25 Score=229.80 Aligned_cols=260 Identities=11% Similarity=0.144 Sum_probs=169.2
Q ss_pred CceEEEEEeCCCC-cchhccCCceE-EEEeCCCcceee--CceeEEcceeeCCCCCchh--hhhhhhhHhHHHHHhC-Cc
Q 004235 8 CSVKVAVHVRPLI-GDERAQGCKEC-VAVTHGNPQVQI--GTHSFTFDHVYGNGGSPSS--AMFGECVAPLVDGLFQ-GY 80 (766)
Q Consensus 8 ~~V~V~vRvRP~~-~~E~~~~~~~~-~~v~~~~~~v~~--~~~~F~FD~Vf~~~~s~q~--~vy~~~v~plV~~~l~-G~ 80 (766)
|+|||++||||.. +. .| +.+..+. +.+ +.++|.||+||++..+ |+ .||++ +.++|+.+++ ||
T Consensus 24 GnIRVFcrvrp~~~p~-------~~~v~y~~~~--I~v~~~~k~f~FDRVf~p~s~-Qe~~~vf~E-~~~~i~scLd~Gy 92 (298)
T 2o0a_A 24 GTMRCYAYVMEQNLPE-------NLLFDYENGV--ITQGLSEHVYKFNRVIPHLKV-SEDKFFTQE-YSVYHDMCLNQKK 92 (298)
T ss_dssp TCCEEEEEECGGGSCT-------TEEEETTTTE--EEETTTCCEEECSEEEETTTS-CHHHHHHHT-THHHHHHHHHTTC
T ss_pred CceEEEEEeccccCCc-------cceeecCccc--eeecCCCceEEeeeEECcccc-ccHHHHHHH-HHHHHHHHHhCCC
Confidence 7999999999965 31 13 2222211 222 3389999999999865 77 99988 8999999999 99
Q ss_pred CEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHHh-ccccceeeEEeehhhhh-cceeeeccCCccccccc
Q 004235 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIET-LRHQMEFQLHVSFIEIL-KEEVRDLLDSVSVSKSV 158 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~~-~~~~~~~~v~vS~~EIy-nE~v~DLL~~~~~~~~~ 158 (766)
|+||||||||||||| ||++..+|...+. .. +.|.+++||+||| ||.++|||...+.
T Consensus 93 NvcIfSyGQTGsGKT----------------~ral~q~f~~~~~~~~--~~Y~~tlq~veLy~Ne~~~DLL~~~~~---- 150 (298)
T 2o0a_A 93 NFNLISLSTTPHGSL----------------RESLIKFLAEKDTIYQ--KQYVITLQFVFLSDDEFSQDMLLDYSH---- 150 (298)
T ss_dssp CEEEEEECSSCCHHH----------------HHHHHHHHHSTTSHHH--HHEEEEEEEEEEECC-CEEETTSCCC-----
T ss_pred ceEEEEECCCCCCcc----------------HHHHHHHHHHhhhhcc--cceEEEEEEEEEecCCchHHhcCCCCC----
Confidence 999999999999999 9999999987644 32 8999999999999 9999999964321
Q ss_pred ccCCCCCccccCCCCCceeeeCCCCcEEEcCceEEEcCC-HHHHHHHHHhcccCcccccCCCCCCCCCcEEEEEEEEEee
Q 004235 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNT-LQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (766)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~ire~~~~~~~v~glte~~V~s-~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~Ifti~v~q~ 237 (766)
+ ..+.|+-+..|..++.|++.+.|.+ ++|+..++.-+.. +..|. +.-.|..+.+...
T Consensus 151 ------------~-~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~ 208 (298)
T 2o0a_A 151 ------------N-DKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPR 208 (298)
T ss_dssp ------------------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEES
T ss_pred ------------C-CcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecC
Confidence 1 1457888889999999999999999 8998887733321 12221 2244555544431
Q ss_pred eecccCCCCCCCCCCCCCcceeeeceeeeecCCCccccccCCCCcchhhhhhhhhhhhHHHHHHHHhhhhccCCCCCccc
Q 004235 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (766)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~a~g~r~kE~~~IN~SL~aLg~vI~aL~~~~~~~~~~~vP 317 (766)
. .. . +.++....--+.|+.+.-.. +...|.+ ++..+ .
T Consensus 209 ~--~~-------~--~~~~~~~~~d~yf~e~~~~~--------------------~~~~l~~---~~~~~---------~ 245 (298)
T 2o0a_A 209 D--SK-------S--DGNNDPVPVDFYFIELNNLK--------------------SIEQFDK---SIFKK---------E 245 (298)
T ss_dssp C--C----------------CCCEEEEEEEECSHH--------------------HHHHHHH---HHHTC----------
T ss_pred c--cc-------c--cccCCCCceEEEEEEeCCHH--------------------HHHHHHh---hcccc---------c
Confidence 0 00 0 00111112346676653211 1222323 22111 3
Q ss_pred CCCChhhhhhhhhcCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhccccccc
Q 004235 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKP 370 (766)
Q Consensus 318 yRdSkLTrLLqdsLgGns~t~mIa~vSP~~~~~~ETl~TL~fa~rar~Ikn~p 370 (766)
+-.|+++-+|+..| -..+.++++++..+..+ -.-|..+++...++|.-
T Consensus 246 ~~~spi~~il~~ll-~~tks~~~~~l~~~~~~----~~lL~~s~~i~~~~~~~ 293 (298)
T 2o0a_A 246 SCETPIALVLKKLI-SDTKSFFLLNLNDSKNV----NKLLTISEEVQTQLCKR 293 (298)
T ss_dssp CCCSHHHHHHHHHH-HHSBCEEEEEECCGGGH----HHHHHHHHHHHHHTC--
T ss_pred ccCCcHHHHHHHHH-hcCcceEEEEecCCCch----hHHHHHHHHhhcccCcc
Confidence 55688999998877 34567888888764432 23588888888888753
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.15 E-value=0.00091 Score=83.88 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.4
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|.|-||+..|-+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 599999999999999999874
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.14 E-value=0.99 Score=46.40 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAE 637 (766)
Q Consensus 577 ~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~ 637 (766)
+..+..++.+|.+++.+.......+. ..++.+....|..||..++...-.|-..+.+-.+
T Consensus 59 ~~~~~~~e~~i~~~~~ri~~~~~~l~-~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 59 KLQVSKNEQTLQDTNAKIASIQKKMS-EIKSERELRSLNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555444443333332 2345556666666666666555554444443333
No 34
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.11 E-value=0.13 Score=63.67 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 004235 583 LEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEF 662 (766)
Q Consensus 583 Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ 662 (766)
++.++.+|++...+...+.+...+.+.+++.|..||..++.+--++.+..++--++..+.+...+..|..|+++..+-+.
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555544444444555556666778888888888777777766666655555566666667777778877777777
Q ss_pred HHHHHHHHHHHH
Q 004235 663 ERHKLEALNQRQ 674 (766)
Q Consensus 663 ei~~L~~~~~~q 674 (766)
++..|+..-..+
T Consensus 1038 q~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1038 EKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777444333
No 35
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.06 E-value=0.01 Score=74.49 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 378 SSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELH 429 (766)
Q Consensus 378 ~~~i~~L~~~i~~l~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~ 429 (766)
..++..++.++..++..+... ...+..+..++..|+.+...+..++.
T Consensus 856 ~~El~~L~~eL~el~~~L~~l-----e~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKA-----EAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776665432 12333444444444444444443333
No 36
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.18 E-value=0.48 Score=58.54 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.3
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.|-||+.-|-+|||||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 599999999999999999874
No 37
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.69 E-value=3.5 Score=40.24 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Q 004235 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES--------QVELLK 602 (766)
Q Consensus 531 ~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e--------~~~l~k 602 (766)
.+|-....++..+...++.|.++... .++.|..+.++-|..+++++.+|+.+... ..++..
T Consensus 13 ~ywk~~~~~~~q~~~~le~El~EFqe-----------sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 13 AYWKELSMKYKQSFQEARDELVEFQE-----------GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888776543 33556666777777777777777654432 112222
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (766)
Q Consensus 603 ~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkm 632 (766)
.+......+..|+.||..++..+..|.+++
T Consensus 82 ~~~e~~~~~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 82 QYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223334445555554444444444444
No 38
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.99 E-value=1.1 Score=43.79 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH
Q 004235 644 ASREKELLKLKKEGRKNEFERHKLE 668 (766)
Q Consensus 644 ~~~~kEi~qLkk~~rk~~~ei~~L~ 668 (766)
...++||.+|++.-+.....|+.|+
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333344443
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.82 E-value=0.6 Score=53.63 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 628 LQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (766)
Q Consensus 628 L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~ 698 (766)
.++++++........-+..++++.+++++-++-+.++.+|+...+.++..+.+-.+|....+..+|+++++
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555556666666667788888888888888888888988888999988764
No 40
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.32 E-value=2.7 Score=43.16 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK 654 (766)
Q Consensus 607 ~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLk 654 (766)
.+..+..+...|..++.....+-..+.+-...+...+...+.++..++
T Consensus 109 lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~ 156 (256)
T 3na7_A 109 ANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIK 156 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444445555554444
No 41
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.32 E-value=0.018 Score=55.50 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=33.5
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.++||.....+ ..+..++.. +..++.++--.-...|+-||++|||||+.+
T Consensus 6 ~~~f~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 6 NANLDTYHPKN-VSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TCCSSSCCCCS-HHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hCccccccCCC-HHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 46888866433 235666654 455666554333456788999999999987
No 42
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.99 E-value=1.9 Score=38.99 Aligned_cols=99 Identities=15% Similarity=0.271 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLK---LKALEAQILELKKKQESQVELLKQ 603 (766)
Q Consensus 527 ~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~k---l~~Le~el~~Lk~k~~e~~~l~k~ 603 (766)
..+...|+..|..|..+|..+..++.+|..++.+.... ...++..|+.. -+.+|.++..|++-..+ .-| .
T Consensus 12 ~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~----~edfk~KyE~E~~~r~~~E~di~~lrK~lD~-~~l--~ 84 (119)
T 3ol1_A 12 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAED----IMRLREKLQEEMLQREEAENTLQSFRQDVDN-ASL--A 84 (119)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--H
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHhhhcccH-HHH--H
Confidence 34567899999999999999999999999988876321 12222223222 23456666666544332 111 2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 604 KHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (766)
Q Consensus 604 k~k~e~~i~~L~~Ei~~mK~~kV~L~kkm 632 (766)
+..-+.++..|..||.-||+-.-.-++.|
T Consensus 85 r~dLE~~iesL~eEl~FLKk~heeEl~eL 113 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLKKLHEEEIQEL 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455566666666666665554433333
No 43
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.24 E-value=0.058 Score=52.73 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=31.5
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcC-EEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N-~tI~aYGqTGSGKTyTm 98 (766)
.++||.+...+ ..+..++.. +...+...-.++. ..|+-||++|+||||.+
T Consensus 21 ~~~f~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLND-DGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSS-HHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCC-hhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 56888766443 234455553 3444444333322 67889999999999987
No 44
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.49 E-value=0.075 Score=56.32 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=31.4
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.++||.+...+ ..+..++. .+...+...-.+....|+-||++|+||||.+
T Consensus 120 ~~tfd~f~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 120 HIHLSDIDVNN-ASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp SCCGGGSCCCS-HHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred hCCHhhCcCCC-hHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 36777655332 12344554 3445555544444567888999999999988
No 45
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.13 E-value=13 Score=35.39 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=37.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHhhhc--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 498 NTMDKELNELNKRLEQKESEMKLFG--DIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 498 ~~l~~EL~eLnk~Le~KE~e~k~~~--~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
..|.++|.++|..|..--+....+- ......-.++.+..+.+|+..+..|+..++.|-.++.++
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~L 74 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQL 74 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777753322111110 112222335667778888888888888888877777664
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.28 E-value=1.3 Score=50.71 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=17.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 604 KHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQF 639 (766)
Q Consensus 604 k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~ 639 (766)
.++.++++..++.+++.+++.+-.|-++.++..++.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 333444445555555555555555544444444333
No 47
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.07 E-value=8.8 Score=35.03 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHH
Q 004235 581 KALEAQILELKKKQES----QVELLKQKHKSDEAAKRLQAEIQSI 621 (766)
Q Consensus 581 ~~Le~el~~Lk~k~~e----~~~l~k~k~k~e~~i~~L~~Ei~~m 621 (766)
.+|+.+|.+|...+.+ ...|...+.+.+..+..|...|..+
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666554444 4555666666666666666666554
No 48
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.82 E-value=0.15 Score=53.35 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=31.3
Q ss_pred cceeeCCCCCchhhhhhhhhHhHHHHHhCCcC----EEEEeecccCCCCcccc
Q 004235 50 FDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN----ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 50 FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N----~tI~aYGqTGSGKTyTm 98 (766)
||.+|+...- ...+.+..+..++...+...+ ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~-~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYI-APAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEEC-CHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccC-CHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 5555554332 345666667777776654222 36788999999999965
No 49
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.36 E-value=7.5 Score=33.52 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004235 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAA 611 (766)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i 611 (766)
.|=+|+.-||++...|+.+...+... ....+...|+.-+.+|..+|..+.. .+.+.+-.+
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~~----------~~~~~~~~ye~~i~~Lr~~i~~~~~----------ek~~l~~e~ 79 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKGQ----------GKSRLGDLYEEEMRELRRQVDQLTN----------DKARVEVER 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc----------cCCCcHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 46688888888888888777655422 1224555576666666666655543 344556667
Q ss_pred HHHHHHHHHHHH
Q 004235 612 KRLQAEIQSIKA 623 (766)
Q Consensus 612 ~~L~~Ei~~mK~ 623 (766)
..|..++..+|.
T Consensus 80 dnl~~~~~~~k~ 91 (93)
T 3s4r_A 80 DNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 778888887775
No 50
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=88.31 E-value=3 Score=43.79 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=62.8
Q ss_pred ceeEEcceeeCCCCCchhhhhhhhhHhHHHHHh-CCcCEEEEeecccCCCCccccCCCCCCCCcccchHHHHHHHHHHHH
Q 004235 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF-QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIE 123 (766)
Q Consensus 45 ~~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l-~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Giipr~~~~LF~~i~ 123 (766)
.+.|.|++|++...-+..+++..-..+.++-++ .+.|+.|+..|..- .+.....|+..+.
T Consensus 91 ~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~-------------------w~~Lr~~lL~fi~ 151 (333)
T 4etp_B 91 EHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP-------------------HGSLRESLIKFLA 151 (333)
T ss_dssp CCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC-------------------CCHHHHHHHHHHH
T ss_pred cceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC-------------------cHHHHHHHHHHHH
Confidence 479999999976654445555555799999999 89999999988531 1234444555554
Q ss_pred hcc--ccceeeEEeehhhhhcce-eeeccCCcc
Q 004235 124 TLR--HQMEFQLHVSFIEILKEE-VRDLLDSVS 153 (766)
Q Consensus 124 ~~~--~~~~~~v~vS~~EIynE~-v~DLL~~~~ 153 (766)
... -.++|.+.+-|+.+.++. ..|||.+..
T Consensus 152 ~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~ 184 (333)
T 4etp_B 152 EKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYS 184 (333)
T ss_dssp STTCHHHHHEEEEEEEEECCSSSCCEESSCC--
T ss_pred hcccccccceEEEEEEEEEcCCCchhhhhcccc
Confidence 420 035788999998888776 799998753
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.15 E-value=0.22 Score=47.10 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=23.9
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++..+..+....|+-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 455666666677778899999999999987
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.77 E-value=6.6 Score=43.78 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 643 KASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (766)
Q Consensus 643 k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~ 698 (766)
.+..++|....+......+.++.+|+..+++++.++..=-....-++.+++++..+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 33344444444444444455555555555555544443333444455666666544
No 53
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.56 E-value=0.33 Score=53.90 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=52.9
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHH-HHhC--C--cCEEEEeecccCCCCcccc--------------CCCCCCCC
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM--------------GTGLREGF 106 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~--G--~N~tI~aYGqTGSGKTyTm--------------~g~~~~~~ 106 (766)
..-+||.|-+-+. .-+.+.+.++-|+.. ..|. | +.-.|+-||++|+|||++. .|+.-...
T Consensus 176 p~~t~~digGl~~-~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 176 PTETYSDVGGLDK-QIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254 (434)
T ss_dssp CSCCGGGSCSCHH-HHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS
T ss_pred CCCChHhcCcHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc
Confidence 3568888887653 345677777777653 3343 2 3356899999999999875 11111233
Q ss_pred cccchHHHHHHHHHHHHhc
Q 004235 107 QTGLIPQVMNALFNKIETL 125 (766)
Q Consensus 107 ~~Giipr~~~~LF~~i~~~ 125 (766)
..|--.+.++.+|......
T Consensus 255 ~vGese~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 255 YIGEGAKLVRDAFALAKEK 273 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhc
Confidence 4688889999999887764
No 54
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.81 E-value=0.25 Score=46.60 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=23.6
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++..+..+....|+-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 455566666676778899999999999977
No 55
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=86.27 E-value=18 Score=40.14 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHH
Q 004235 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQ-VELLKQKHKSDE 609 (766)
Q Consensus 531 ~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~-~~l~k~k~k~e~ 609 (766)
..|+.+|...+.|+...|+.... .+++|+++|.+...+-+.++...... .+-...+...+.
T Consensus 5 a~yq~~la~yq~elarvqkana~------------------aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~ 66 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANAD------------------AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEA 66 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888777777666555433 35678888888888777776544442 233345667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKK 655 (766)
Q Consensus 610 ~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk 655 (766)
++.+.+.++..-++.+..-.. +...+...+++-.++++.+++
T Consensus 67 ~l~kY~~dlakY~~~~AeY~~----kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 67 KLAKYQADLAKYQKDLADYPV----KLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 777777777666655333222 223344444444455554443
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.93 E-value=31 Score=38.16 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 626 VQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (766)
Q Consensus 626 V~L~kkmkee~~~~r~~k~~~~kEi~qLkk~ 656 (766)
-++++.|+++.++.++.++..++++..+.++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 3445555555555555555555555555443
No 57
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.62 E-value=0.27 Score=54.57 Aligned_cols=78 Identities=24% Similarity=0.306 Sum_probs=49.8
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhC--C--cCEEEEeecccCCCCcccc--------------CCCCCCCCc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM--------------GTGLREGFQ 107 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~--G--~N~tI~aYGqTGSGKTyTm--------------~g~~~~~~~ 107 (766)
.-+||.|-|-+. .-+.+.+.+.-|+.. ..|. | ..-.|+-||++|+|||++. .|+.--...
T Consensus 168 ~v~~~digGl~~-~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 168 DVTYADVGGLDM-QKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY 246 (428)
T ss_dssp SCCGGGSCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCCHHHhccHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccc
Confidence 467888877543 234555555555533 2333 3 2345999999999999875 111112345
Q ss_pred ccchHHHHHHHHHHHHhc
Q 004235 108 TGLIPQVMNALFNKIETL 125 (766)
Q Consensus 108 ~Giipr~~~~LF~~i~~~ 125 (766)
.|--++.++.+|......
T Consensus 247 ~Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLAREN 264 (428)
T ss_dssp CSHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHc
Confidence 688899999999987764
No 58
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.47 E-value=24 Score=33.13 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=17.0
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHhh
Q 004235 495 LWQNTMDKELNELNKRLEQKESEMKL 520 (766)
Q Consensus 495 ~~q~~l~~EL~eLnk~Le~KE~e~k~ 520 (766)
..|..|+.+|....+.|+.....++.
T Consensus 13 n~qs~LeD~L~~~R~el~~~~~ri~~ 38 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIASQKAAIEN 38 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888877777755544443
No 59
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.98 E-value=0.28 Score=52.30 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=21.6
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
|-..+-.|...+|+-||++|+|||.+.
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 333344688889999999999999877
No 60
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.10 E-value=0.29 Score=51.78 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=29.2
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|+|+.+++.+ .+.. .+...++.+..+.|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~-----~~~~----~l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE-----DMKL----ALLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH-----HHHH----HHHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH-----HHHH----HHHHHhhCCCCceEEEECCCCccHHHHH
Confidence 468999988642 2322 2333344444455999999999999976
No 61
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.94 E-value=46 Score=45.70 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=16.9
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+++.++.. +--|+-+|+||||||-++
T Consensus 1296 ll~~ll~~-~~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1296 VLHAWLSE-HRPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp HHHHHHHT-TCCCEEESSTTSSHHHHH
T ss_pred HHHHHHHC-CCcEEEECCCCCCHHHHH
Confidence 44444432 223577899999999654
No 62
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.78 E-value=0.28 Score=50.05 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=21.0
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|+||.+.+.+ .....+ ...+..+.. .+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~-----~~~~~~-~~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEA-----NSFLEV-LEQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCC-----HHHHHH-HHHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCC-----HHHHHH-HHHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 48899988642 122222 222333332 3456888999999999876
No 63
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.46 E-value=0.38 Score=50.70 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=29.0
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|+||.++... + +...+.. +..++..-- +....|+-||++|+|||+.+
T Consensus 7 ~~~f~~fv~g~-~-~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 7 KYTLENFIVGE-G-NRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TCCSSSCCCCT-T-THHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCcccCCCCC-c-HHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 58898876321 2 3344433 333443321 12346788999999999987
No 64
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.27 E-value=0.32 Score=50.07 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=30.6
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHH-----HHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLV-----DGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV-----~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..++|+.+.+.+. .-..+.+.+..|+. ...--.....|+-||++|+|||+..
T Consensus 12 ~~~~~~~i~G~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEK-QMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHH-HHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHH-HHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4688999887542 23334333333221 1111133456889999999999876
No 65
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.20 E-value=0.53 Score=50.27 Aligned_cols=46 Identities=26% Similarity=0.250 Sum_probs=31.5
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCE--EEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNA--TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~--tI~aYGqTGSGKTyTm 98 (766)
.++||.+.+.+ .... .+..++..+-.|... .|+-||++|+|||+..
T Consensus 40 ~~~~~~ivG~~-----~~~~-~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQL-----AARR-AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESCH-----HHHH-HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccChH-----HHHH-HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 56788888642 2221 244556666667654 7899999999999976
No 66
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.17 E-value=0.33 Score=50.85 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=30.0
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhC----CcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ----GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~----G~N~tI~aYGqTGSGKTyTm 98 (766)
.++||.|.+.+.. -..+.+.+..|+.. ..|. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~-~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDV-KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHH-HHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHH-HHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 5678888765422 23444443333211 1111 23456899999999999876
No 67
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.98 E-value=0.33 Score=49.53 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=29.4
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHH-----HHHhCCcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLV-----DGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV-----~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.++|+.+.+.+.. ...+.+ .+..+- ..+-......|+-||++|+|||+..
T Consensus 7 ~~~~~~i~G~~~~-~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEA-KEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTT-HHHHHH-HHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHH-HHHHHH-HHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 5788998876543 333332 222211 1111122345899999999999977
No 68
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.60 E-value=0.27 Score=50.99 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=31.2
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHH-HHhCC---cCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQG---YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~G---~N~tI~aYGqTGSGKTyTm 98 (766)
...+|+.+.+.+. .-..+.+.+..|+.. .++.| ....|+-||++|+|||+..
T Consensus 16 ~~~~~~~i~G~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDV-AKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHH-HHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHH-HHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3567888886532 133344443333321 12233 3457899999999999876
No 69
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.77 E-value=0.63 Score=45.91 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=26.8
Q ss_pred EEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 48 F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++|+.+++.. . +..++.. +-..+..+....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~~-~-~~~~~~~----l~~~~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPAA-G-NDELIGA----LKSAASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---C-CHHHHHH----HHHHHHTCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCCC-C-CHHHHHH----HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 6777666522 2 2333332 222222335567889999999999987
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.68 E-value=0.39 Score=48.65 Aligned_cols=15 Identities=47% Similarity=0.563 Sum_probs=14.2
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+-||++|||||+.+
T Consensus 52 ~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999987
No 71
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.45 E-value=0.59 Score=46.07 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=19.6
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++..++.|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 4556678877 677899999999873
No 72
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.35 E-value=0.9 Score=49.90 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=51.2
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhC--C--cCEEEEeecccCCCCcccc--------------CCCCCCCCc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM--------------GTGLREGFQ 107 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~--G--~N~tI~aYGqTGSGKTyTm--------------~g~~~~~~~ 107 (766)
.-+||.|-|-+. .-+++.+.+.-|+.. .+|. | ..-.|+-||++|+|||+.. .|+.--...
T Consensus 144 ~v~~~dIgGl~~-~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 144 DSTYDMVGGLTK-QIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp SCCGGGSCSCHH-HHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCHHHhCCHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 467888877543 345666666666643 3343 2 2346999999999999875 111112334
Q ss_pred ccchHHHHHHHHHHHHhc
Q 004235 108 TGLIPQVMNALFNKIETL 125 (766)
Q Consensus 108 ~Giipr~~~~LF~~i~~~ 125 (766)
.|--.+.++.+|......
T Consensus 223 vGese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREH 240 (405)
T ss_dssp TTHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 577899999999988764
No 73
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=81.23 E-value=0.68 Score=44.90 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=18.7
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3455677876 567889999999764
No 74
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.22 E-value=3.3 Score=45.81 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=49.7
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhC--C--cCEEEEeecccCCCCcccc--------------CCCCCCCCc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM--------------GTGLREGFQ 107 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~--G--~N~tI~aYGqTGSGKTyTm--------------~g~~~~~~~ 107 (766)
.-+||.|=+-+. .-+.+.+.+.-|+.. .+|. | +.-.|+-||+.|+|||++. .|+.--...
T Consensus 178 ~v~~~DIgGld~-~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~ 256 (437)
T 4b4t_I 178 TESYSDIGGLES-QIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY 256 (437)
T ss_dssp CCCGGGTCSCHH-HHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS
T ss_pred CCcceecCcHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc
Confidence 467777776542 234555555555532 2333 2 3357999999999999864 111112345
Q ss_pred ccchHHHHHHHHHHHHhc
Q 004235 108 TGLIPQVMNALFNKIETL 125 (766)
Q Consensus 108 ~Giipr~~~~LF~~i~~~ 125 (766)
.|--.+.++.+|......
T Consensus 257 vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 257 LGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhc
Confidence 688899999999988764
No 75
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=80.78 E-value=0.67 Score=51.23 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=23.8
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+++..++..-.+.|+..|+||||||+||
T Consensus 156 ~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 156 HDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 34677777666778899999999999998
No 76
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.77 E-value=1.4e+02 Score=41.08 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=16.0
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
...-+||..|+||||||.+.
T Consensus 904 ~vRhGvmlVGp~gsGKTt~~ 923 (3245)
T 3vkg_A 904 NINHGVMMVGPSGGGKTTSW 923 (3245)
T ss_dssp TTCSEEEEECSSSSSHHHHH
T ss_pred HheeeEEEECCCCCCHHHHH
Confidence 34556899999999999774
No 77
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.58 E-value=0.78 Score=50.98 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=50.0
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhCCc----CEEEEeecccCCCCcccc--------------CCCCCCCCc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGY----NATVLAYGQTGSGKTYTM--------------GTGLREGFQ 107 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~G~----N~tI~aYGqTGSGKTyTm--------------~g~~~~~~~ 107 (766)
..+||.|-+-+. .-.++.+.+.-|+.. .+|.++ .-.|+-||++|+|||++. .|+.--+..
T Consensus 177 ~v~~~digGl~~-~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 177 EITFDGIGGLTE-QIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY 255 (437)
T ss_dssp SSCSGGGCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred CCChhHhCChHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc
Confidence 567888876543 244565555555542 344322 357999999999999875 111112334
Q ss_pred ccchHHHHHHHHHHHHhc
Q 004235 108 TGLIPQVMNALFNKIETL 125 (766)
Q Consensus 108 ~Giipr~~~~LF~~i~~~ 125 (766)
.|--...++.+|......
T Consensus 256 ~Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEH 273 (437)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHhc
Confidence 677889999999987764
No 78
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.36 E-value=28 Score=30.11 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQV 598 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~ 598 (766)
.++..|+.+......|..+|...|.. ....+..-+.....++.+|.+|...+=+.+
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~e--------E~~~R~~aE~~~~~ie~ElEeLTasLFeEA 67 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAK--------ENELRTKAEEEADKLNKEVEDLTASLFDEA 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666655543 123344456666677777777765544433
No 79
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.24 E-value=0.69 Score=44.83 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=18.9
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| ++..++||||||.+.
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHHH
Confidence 3455677877 567789999999873
No 80
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=79.57 E-value=0.71 Score=44.54 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=17.0
Q ss_pred hCCcCEEEEeecccCCCCcccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm 98 (766)
-.|-...|+-||++|+|||+.+
T Consensus 34 ~~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 34 ERKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp HTTCCCCEEEECSTTSSHHHHH
T ss_pred hCCCCCeEEEECCCCCCHHHHH
Confidence 3444344999999999999976
No 81
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.29 E-value=1 Score=46.09 Aligned_cols=21 Identities=33% Similarity=0.237 Sum_probs=18.4
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999976
No 82
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.84 E-value=0.37 Score=49.70 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=14.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-||++|||||+.+
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 3899999999999987
No 83
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.65 E-value=0.56 Score=47.03 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=19.7
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4556678877 577899999999874
No 84
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=78.56 E-value=0.74 Score=49.77 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=23.3
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.+..++.--.+.|+..|+||||||++|
T Consensus 112 ~~~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 112 GEVFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CHHHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred hHHHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 45666666666678889999999999998
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=77.92 E-value=0.88 Score=45.60 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=19.8
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| ++..++||||||.+.
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4566778887 577889999999873
No 86
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.21 E-value=0.48 Score=51.01 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=29.1
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHH----hCCcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGL----FQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~----l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+||.+.+.+.. -..+.+.+..|+...- +.+....|+-||++|+|||+..
T Consensus 80 ~~~~~~i~G~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFA-KATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHH-HHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHH-HHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 4577777754321 2233333333322111 2244567999999999999876
No 87
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.07 E-value=1.1 Score=49.74 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=31.1
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcC--EEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N--~tI~aYGqTGSGKTyTm 98 (766)
..|.||.|.+. +.+... +..++..+..|.. ..|+-||++|+|||+..
T Consensus 32 ~~~~~~~iiG~-----~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 32 AKQAASGLVGQ-----ENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp BCSEETTEESC-----HHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhhchhhccCH-----HHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 35678888754 233332 3455666666653 35788999999999875
No 88
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.02 E-value=0.83 Score=51.00 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=48.7
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhCC----cCEEEEeecccCCCCcccc--------------CCCCCCCCc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQG----YNATVLAYGQTGSGKTYTM--------------GTGLREGFQ 107 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~G----~N~tI~aYGqTGSGKTyTm--------------~g~~~~~~~ 107 (766)
..+||.|-+-+. .-+.+.+.+.-|+.. .+|.+ .--.|+-||++|+|||++. .|+.--...
T Consensus 205 ~vt~~DIgGl~~-~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 205 DVTYSDVGGCKD-QIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY 283 (467)
T ss_dssp SCCCSSCTTCHH-HHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS
T ss_pred CCCHHHhccHHH-HHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc
Confidence 467777766542 234555555555433 33433 3357999999999999864 111112334
Q ss_pred ccchHHHHHHHHHHHHhc
Q 004235 108 TGLIPQVMNALFNKIETL 125 (766)
Q Consensus 108 ~Giipr~~~~LF~~i~~~ 125 (766)
.|--.+.++.+|......
T Consensus 284 vGesek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 284 VGEGARMVRELFEMARTK 301 (467)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 678889999999987764
No 89
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.98 E-value=4.2 Score=37.75 Aligned_cols=25 Identities=16% Similarity=-0.025 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 536 KIMELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
+...|+.++..+.+|.-.|..++..
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.95 E-value=0.8 Score=42.84 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=14.5
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..++-||++||||||.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667999999999988
No 91
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=76.67 E-value=0.6 Score=49.53 Aligned_cols=51 Identities=27% Similarity=0.500 Sum_probs=30.6
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhCCc---CEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGY---NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~G~---N~tI~aYGqTGSGKTyTm 98 (766)
..+||.|.+.+.. -..+.+.+..|+-. .+|.|. ...|+-||++|+|||+..
T Consensus 8 ~~~~~di~G~~~~-k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGA-KEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHH-HHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHH-HHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 3578888765422 23344433334321 344442 246889999999999876
No 92
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=76.37 E-value=37 Score=31.75 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=14.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 004235 664 RHKLEALNQR-QKMVLQRKTEEAAIATKRL 692 (766)
Q Consensus 664 i~~L~~~~~~-q~~vLkrK~eEa~a~~krl 692 (766)
+.+|+..|.. =+..+++|..||.+.|.++
T Consensus 119 l~kLq~EN~~LV~RWM~rk~qEAe~MN~an 148 (152)
T 3a7p_A 119 LSDLKKEHSQLVARWLKKTEKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444443322 2345778888888777665
No 93
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=76.32 E-value=1 Score=46.37 Aligned_cols=27 Identities=37% Similarity=0.399 Sum_probs=19.5
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+++++.-.-+..|.-.|+||||||+++
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHH
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHH
Confidence 334433344567888899999999998
No 94
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=76.26 E-value=1 Score=44.74 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=19.1
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++..++.|.| ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 4456678877 466789999999874
No 95
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=76.11 E-value=0.86 Score=50.61 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=27.6
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|+||..... .+ +...+.. +..+... .|....++-||++|+|||+.+
T Consensus 100 ~~~tfd~fv~g-~~-n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 100 PDYTFENFVVG-PG-NSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp TTCSGGGCCCC-TT-THHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCChhhcCCC-Cc-hHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 46888875522 12 3333322 2333332 131335788999999999988
No 96
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.82 E-value=23 Score=32.11 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 004235 608 DEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHK 666 (766)
Q Consensus 608 e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~ 666 (766)
...|..|+.||+.++.++..|-..+.+--.++...-.....-|..|..+-.+...+|.+
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35678899999999999999999888766666554444445555555444444444443
No 97
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.63 E-value=17 Score=32.86 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004235 543 EKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIK 622 (766)
Q Consensus 543 ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK 622 (766)
.|..|..|.+.|..+++.+ +.++...+.+|+.+|..|...+.++..+ +++.-.....|+.|+..+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l-----------~~E~q~~v~ql~~~i~~Le~eL~e~r~~---~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 16 LIERLYREISGLKAQLENM-----------KTESQRVVLQLKGHVSELEADLAEQQHL---RQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666544 2233444445555555555444443322 2233333446666666654
Q ss_pred HHH
Q 004235 623 AQK 625 (766)
Q Consensus 623 ~~k 625 (766)
.+.
T Consensus 82 ~~~ 84 (120)
T 3i00_A 82 RQR 84 (120)
T ss_dssp TTC
T ss_pred HHh
Confidence 443
No 98
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=75.40 E-value=0.66 Score=45.08 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=18.2
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++.|.| ++..|+||||||++.
T Consensus 42 i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 42 AQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 344566766 466899999999987
No 99
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.39 E-value=0.99 Score=47.62 Aligned_cols=29 Identities=34% Similarity=0.445 Sum_probs=20.7
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+...+..|....++-||++|+|||+++
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 44445555563334889999999999987
No 100
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=75.31 E-value=1.1 Score=43.97 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.1
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 4556677877 566789999999875
No 101
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=74.98 E-value=45 Score=38.28 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.0
Q ss_pred hCCcCEEEEeecccCCCCcccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+.+-...|...|.+|+|||+.|
T Consensus 34 i~~~~~~VaivG~pnvGKStLi 55 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLM 55 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHH
Confidence 3555677888999999999876
No 102
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=73.83 E-value=0.9 Score=46.43 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=19.5
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++..++.|.| +++.++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 4555677877 678899999999874
No 103
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=73.74 E-value=1.3 Score=43.71 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=19.3
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.|+ +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45566788875 66789999999874
No 104
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=73.49 E-value=1.4 Score=44.47 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=19.0
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++..++.|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4456677877 466789999999864
No 105
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=73.43 E-value=0.8 Score=48.77 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=17.2
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
+....|+-||++|+|||+++
T Consensus 42 ~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 45567899999999999987
No 106
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=73.25 E-value=10 Score=32.11 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 004235 538 MELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAE 617 (766)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~E 617 (766)
.+|..+|..+..++.++..++.++....++-..|..++.. +-+.+|.++..|++-..+. -| .+..-+.++..|..|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~-~R~~~E~d~~~LrkdvD~a-~l--~r~dLE~kvesL~eE 78 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML-QREEAENTLQSFRQDVDNA-SL--ARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTHHHH-HH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHH-HH--HHHHHHHHHHHHHHH
Confidence 4566666666666666666666543211111222222221 2256777787777654432 22 234567778888888
Q ss_pred HHHHHH
Q 004235 618 IQSIKA 623 (766)
Q Consensus 618 i~~mK~ 623 (766)
|.-||+
T Consensus 79 l~fLkk 84 (86)
T 3swk_A 79 IAFLKK 84 (86)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 887764
No 107
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.16 E-value=54 Score=29.73 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004235 613 RLQAEIQSIKAQKVQLQNKIK 633 (766)
Q Consensus 613 ~L~~Ei~~mK~~kV~L~kkmk 633 (766)
.|+.||+.++.++..|-..+.
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 333444444444444444443
No 108
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=72.74 E-value=0.72 Score=50.10 Aligned_cols=52 Identities=27% Similarity=0.457 Sum_probs=29.2
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHH-HHhCC---cCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQG---YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~G---~N~tI~aYGqTGSGKTyTm 98 (766)
..++||.+.+.+. .-..+...+..|+.. .++.| -...|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDL-AKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHH-HHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHH-HHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3567888876432 122333333333221 11122 2357899999999999876
No 109
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=72.44 E-value=60 Score=37.25 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 578 LKLKALEAQILELKKKQESQVELLKQ 603 (766)
Q Consensus 578 ~kl~~Le~el~~Lk~k~~e~~~l~k~ 603 (766)
.|-..+|.+...|..++.++.+++..
T Consensus 494 ~~~e~~~~~~~~l~~~~~~~~~~~~~ 519 (592)
T 1f5n_A 494 VKAESAQASAKMLHEMQRKNEQMMEQ 519 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554443
No 110
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=72.18 E-value=25 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 607 SDEAAKRLQAEIQSIKAQKVQLQNKI 632 (766)
Q Consensus 607 ~e~~i~~L~~Ei~~mK~~kV~L~kkm 632 (766)
+-..+..|+.||..++..+-.|.+++
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~i 58 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKYV 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444444444333
No 111
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=71.99 E-value=1.4 Score=46.14 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=20.3
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|-+.-++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456677773344788999999999874
No 112
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=71.88 E-value=1.7 Score=45.06 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=16.5
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34447899999999999976
No 113
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=71.82 E-value=1.3 Score=44.30 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=18.4
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.|+ +..++||||||.+.
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 34556678775 55679999999874
No 114
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=71.79 E-value=1.6 Score=43.37 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=18.7
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| ++..++||||||.+.
T Consensus 54 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 54 AIPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3445677877 466789999999873
No 115
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=71.57 E-value=1.4 Score=44.10 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=19.1
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.++..+..|-+ ++..|+||||||..+
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 45555666654 577899999999866
No 116
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.26 E-value=1.6 Score=45.25 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=23.2
Q ss_pred HhHHHHHhCCc---CEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGY---NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~---N~tI~aYGqTGSGKTyTm 98 (766)
...+..++.|. --||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 34577888887 337999999999999876
No 117
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=71.19 E-value=2 Score=45.83 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=20.5
Q ss_pred HhHHHHHhCCcC-E--EEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYN-A--TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N-~--tI~aYGqTGSGKTyTm 98 (766)
...+..++.|.. . .|+-||++|+|||+++
T Consensus 30 ~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 30 DILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp HHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 344455544433 4 6889999999999987
No 118
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=71.05 E-value=1.7 Score=44.04 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=18.9
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 4556678877 456679999999874
No 119
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=70.74 E-value=1.8 Score=46.49 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=20.9
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+..++.|.| ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 45667788988 577899999999874
No 120
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=70.32 E-value=24 Score=30.78 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
++|..|+.|...|..+++.|-.+|+..
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777773
No 121
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=70.17 E-value=1.1 Score=43.96 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=18.0
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++.|.|+ +..++||||||.+.
T Consensus 35 i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4555678774 66789999999874
No 122
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=70.11 E-value=1.2 Score=47.12 Aligned_cols=52 Identities=29% Similarity=0.559 Sum_probs=30.2
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHH-HHhCCc---CEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGY---NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~G~---N~tI~aYGqTGSGKTyTm 98 (766)
...+|+.|.+.+.. -..+.+.+..|+.. .++.+. ...|+-||++|+|||+..
T Consensus 13 ~~~~~~di~G~~~~-~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGA-KEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHH-HHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHH-HHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34678888765321 23343333333321 222332 346899999999999876
No 123
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=70.08 E-value=4.1 Score=47.60 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=48.9
Q ss_pred EEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccch----HHHHHHHHHHHH
Q 004235 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLI----PQVMNALFNKIE 123 (766)
Q Consensus 48 F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Gii----pr~~~~LF~~i~ 123 (766)
|.|..+ .|.+. |..-+ ..+++++-.|.... ...|.||||||+||..-......+-|| ......|++.+.
T Consensus 2 ~~~~~~-~~~~~-q~~ai----~~l~~~~~~~~~~~-~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~ 74 (664)
T 1c4o_A 2 FRYRGP-SPKGD-QPKAI----AGLVEALRDGERFV-TLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFR 74 (664)
T ss_dssp CCCCSC-CCCTT-HHHHH----HHHHHHHHTTCSEE-EEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCC-CCCCC-ChHHH----HHHHHHHhcCCCcE-EEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHH
Confidence 555554 66654 54443 44677777776433 456999999999994211000011111 123455666665
Q ss_pred hccccceeeEEeehhhhhc
Q 004235 124 TLRHQMEFQLHVSFIEILK 142 (766)
Q Consensus 124 ~~~~~~~~~v~vS~~EIyn 142 (766)
..-....+....||+--|.
T Consensus 75 ~~~~~~~V~~fps~yd~~~ 93 (664)
T 1c4o_A 75 ELFPENAVEYFISYYDYYQ 93 (664)
T ss_dssp HHCTTSEEEECCCGGGTSC
T ss_pred HHCCCCeEEEcCchhhccC
Confidence 5433445667788755554
No 124
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=69.97 E-value=1.2 Score=44.45 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=18.9
Q ss_pred HHHHhCCcC--EEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N--~tI~aYGqTGSGKTyTm 98 (766)
+..++.|.- -+++-||+.|+|||++.
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 344445532 46899999999999876
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=69.91 E-value=1.4 Score=47.70 Aligned_cols=28 Identities=36% Similarity=0.376 Sum_probs=21.2
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+++..+.-.-...|+-.|+||||||++|
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 4455554445667888999999999998
No 126
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=69.60 E-value=2.3 Score=39.04 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=14.9
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
+..|+-||++|+|||+..
T Consensus 27 ~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp SSCEEEEEETTCCHHHHH
T ss_pred CCcEEEECCCCccHHHHH
Confidence 345788999999999876
No 127
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=69.47 E-value=0.91 Score=47.00 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=26.0
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhCCcC----EEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGYN----ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~G~N----~tI~aYGqTGSGKTyTm 98 (766)
..+||.|-+.+. .-+.+.+.++.|+-. .+|.+++ ..|+-||+.|||||+.+
T Consensus 6 ~~~~~di~g~~~-~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALED-IREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHH-HHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHH-HHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 356777665432 234454445555422 2333222 22899999999999886
No 128
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=69.17 E-value=72 Score=35.38 Aligned_cols=55 Identities=9% Similarity=0.139 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 004235 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKK 593 (766)
Q Consensus 528 ~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k 593 (766)
..+..|++++.+.+.+...++.|...+.+.=+ ..+..|+.+|.+-++.|+.-++.
T Consensus 27 ~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa-----------~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 27 DAKAAYEAAVAANNAANAALTAENTAIKKRNA-----------DAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999888877764322 22456888887777777666654
No 129
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=69.12 E-value=0.98 Score=47.38 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.3
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...++-||++|+|||+++
T Consensus 48 ~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSEEEECSSTTSSHHHHH
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 356788899999999987
No 130
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.81 E-value=67 Score=29.00 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004235 638 QFRQWKASREKELLKLK 654 (766)
Q Consensus 638 ~~r~~k~~~~kEi~qLk 654 (766)
.--..|...+-||+.-+
T Consensus 107 ~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 107 ELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666666544
No 131
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=68.79 E-value=2 Score=48.72 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=16.6
Q ss_pred hCCcCEEEEeecccCCCCcccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm 98 (766)
-.|.+ |+..|+||||||+||
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHH
Confidence 35776 567899999999997
No 132
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=68.60 E-value=1.1 Score=48.00 Aligned_cols=51 Identities=29% Similarity=0.577 Sum_probs=29.6
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhCCc---CEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGY---NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~G~---N~tI~aYGqTGSGKTyTm 98 (766)
..+|+.|.+.+.. -..+.+.+..|+-. .+|.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~-~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGA-KEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGH-HHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHH-HHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 5678888765321 23344433333221 233332 235888999999999876
No 133
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=68.50 E-value=64 Score=28.62 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 004235 631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALN 671 (766)
Q Consensus 631 kmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~ 671 (766)
|.+.-...+-..-...++||.+|+...+....-|+.|+..+
T Consensus 25 K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 25 KLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333334444455678888888888888888888887544
No 134
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=68.40 E-value=44 Score=37.21 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004235 582 ALEAQILELKKKQESQVELLK 602 (766)
Q Consensus 582 ~Le~el~~Lk~k~~e~~~l~k 602 (766)
+|+..|..|+.+..++...++
T Consensus 114 ELRRrIqyLKekVdnQlsnIr 134 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQ 134 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666554443
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=68.36 E-value=3.4 Score=42.95 Aligned_cols=33 Identities=33% Similarity=0.369 Sum_probs=23.5
Q ss_pred hhhhHhHHHHHhCCc-----CEEEEeecccCCCCcccc
Q 004235 66 GECVAPLVDGLFQGY-----NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 66 ~~~v~plV~~~l~G~-----N~tI~aYGqTGSGKTyTm 98 (766)
...+..++..++.|+ ...|+..|++|||||+..
T Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 13 ENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 345566666666553 356888999999999865
No 136
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=68.21 E-value=1.4 Score=44.34 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.2
Q ss_pred cCEEEEeecccCCCCcccc
Q 004235 80 YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (766)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4456899999999999976
No 137
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=68.11 E-value=2 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.2
Q ss_pred HHHHHhCCcCEEEEeecccCCCCccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYT 97 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyT 97 (766)
.+..++.|.+..++..|+||||||.+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45666777667789999999999977
No 138
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.41 E-value=70 Score=29.44 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 606 KSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (766)
Q Consensus 606 k~e~~i~~L~~Ei~~mK~~kV~L~kkm 632 (766)
...+.+..|+.++..+..+.++|-..+
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666664433
No 139
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=66.99 E-value=1.9 Score=44.58 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=15.8
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+-||++|+|||++.
T Consensus 47 ~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SEEEEEESCSSSSHHHHH
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 368999999999999876
No 140
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.93 E-value=2.1 Score=45.24 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=19.7
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+-..+-.|--..++-||+.|+|||+++
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHH
Confidence 33434444563323788999999999987
No 141
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=66.83 E-value=1.2 Score=49.60 Aligned_cols=52 Identities=27% Similarity=0.477 Sum_probs=29.2
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHH-HHhCC---cCEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQG---YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~G---~N~tI~aYGqTGSGKTyTm 98 (766)
...+|+.|.+.+.. -..+.+.+..|+.. .+|.| ....|+-||++|+|||+..
T Consensus 129 ~~~~~~di~G~~~~-k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGA-KEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHH-HHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHH-HHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 35678887764321 22233332233221 23333 2346888999999999876
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=66.29 E-value=1.5 Score=46.51 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=16.8
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
+....|+-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34557899999999999877
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=66.23 E-value=2 Score=45.79 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=20.9
Q ss_pred HhHHHHHhCC-cCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G-~N~tI~aYGqTGSGKTyTm 98 (766)
...+..++.| ....|+-||++|+|||+++
T Consensus 33 ~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 33 AIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3344554444 4458999999999999976
No 144
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.21 E-value=13 Score=30.46 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004235 534 GKKIMELEEEKRIVQQERDRL 554 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~L 554 (766)
++.|.+.+.+|..|+.|.|++
T Consensus 46 Ek~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 46 ELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 467778888888888887775
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=65.96 E-value=2.2 Score=41.38 Aligned_cols=17 Identities=35% Similarity=0.385 Sum_probs=15.1
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47889999999999876
No 146
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=65.93 E-value=2.3 Score=45.81 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=19.5
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4556778887 567789999999764
No 147
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=65.69 E-value=1.6 Score=40.21 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=16.2
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 44556899999999999865
No 148
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=65.27 E-value=2.1 Score=44.02 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=15.5
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456888999999999976
No 149
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=65.08 E-value=2 Score=48.47 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=16.8
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 44567999999999999876
No 150
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=65.05 E-value=2.3 Score=42.75 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=18.1
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++.+.+ ++.+|+||+|||++.
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHH
Confidence 445666655 667789999999986
No 151
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.86 E-value=82 Score=28.53 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 004235 575 GHTLKLKALEAQILELKKKQESQV-ELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQE---AEQFRQWKASREKEL 650 (766)
Q Consensus 575 ~~~~kl~~Le~el~~Lk~k~~e~~-~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee---~~~~r~~k~~~~kEi 650 (766)
+++..++.|+.+|..++....... .+.-.....+..+..++.-|..+..+-.++-..|-.. -+.--..|...+-||
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999988876554433 3334556666666666666666555443333322222 223334566666666
Q ss_pred HHHH
Q 004235 651 LKLK 654 (766)
Q Consensus 651 ~qLk 654 (766)
+.-+
T Consensus 122 atYR 125 (131)
T 3tnu_A 122 ATYR 125 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 152
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=64.76 E-value=2.3 Score=45.49 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=20.5
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 456667775555788899999999874
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=64.32 E-value=2.6 Score=43.70 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=16.8
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|....++-||++|+|||++.
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 354444899999999999977
No 154
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=64.16 E-value=2.6 Score=43.62 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=18.0
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+++|.| ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 445567876 466789999999875
No 155
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=64.12 E-value=3 Score=47.75 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=19.6
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+++.+..|.+.++++ ++||||||.++
T Consensus 188 ~~~~~~~~~~~~~~ll~-~~TGsGKT~~~ 215 (590)
T 3h1t_A 188 NRAVQSVLQGKKRSLIT-MATGTGKTVVA 215 (590)
T ss_dssp HHHHHHHHTTCSEEEEE-ECTTSCHHHHH
T ss_pred HHHHHHHhcCCCceEEE-ecCCCChHHHH
Confidence 33444555577665555 99999999997
No 156
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=63.94 E-value=2.4 Score=45.02 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=19.6
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|-+..++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 445667774345677899999999864
No 157
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=63.85 E-value=33 Score=29.93 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQER----DRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES 596 (766)
Q Consensus 537 l~eLe~ei~~lq~Er----d~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e 596 (766)
|.+|+.|+...+.+. .+|..+-.......|+-.+..=..|+.-.+.|+..|++|++...+
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333 233333333333444333333344555566666666666665544
No 158
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.55 E-value=1.9 Score=43.61 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.6
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+-||++|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 446899999999999876
No 159
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.90 E-value=3.6 Score=44.16 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=21.4
Q ss_pred HhHH-HHHhCC---cCEEEEe--ecccCCCCcccc
Q 004235 70 APLV-DGLFQG---YNATVLA--YGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV-~~~l~G---~N~tI~a--YGqTGSGKTyTm 98 (766)
...+ ..+..| -...++. ||+.|+|||+.+
T Consensus 35 ~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 35 ARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 3344 555555 5567888 999999999977
No 160
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=62.82 E-value=76 Score=27.48 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 004235 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKK 593 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k 593 (766)
+..+..|..++..++.+.|.+...|... ..++.+ -++.....|.++..|.++
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea-------~~kLee-~ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKS-------EDSLLF-AEENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444321 122222 344455555555555443
No 161
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=62.45 E-value=2.6 Score=45.06 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=18.8
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 4455667877 567789999999764
No 162
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=62.19 E-value=2.1 Score=44.96 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=18.5
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+...+..|. .|+-||++|+|||+..
T Consensus 38 ~l~~~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 38 RLLIGICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHTC--CEEEESCCCHHHHHHH
T ss_pred HHHHHHHcCC--eEEEECCCCCcHHHHH
Confidence 3334444453 5788999999999977
No 163
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=61.80 E-value=3 Score=44.84 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=18.6
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++.|.|+ +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 4556788875 66789999999865
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=61.15 E-value=2.4 Score=43.78 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=16.7
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|....++-||++|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 454444899999999999876
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=60.77 E-value=3.1 Score=41.10 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=21.8
Q ss_pred HhHHHHHhCC-c--CEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQG-Y--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G-~--N~tI~aYGqTGSGKTyTm 98 (766)
-|-+|.++.| + ...+.-+|++|||||+.+
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 3556777754 2 346778899999999987
No 166
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=60.54 E-value=5.2 Score=40.41 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=21.7
Q ss_pred hhhhhHhHHHHHhCCcC-----EEEEeecccCCCCcccc
Q 004235 65 FGECVAPLVDGLFQGYN-----ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 65 y~~~v~plV~~~l~G~N-----~tI~aYGqTGSGKTyTm 98 (766)
|..+...++..++.|+. ..|+..|++|||||+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 33344444455554432 46888999999999754
No 167
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.36 E-value=72 Score=27.56 Aligned_cols=54 Identities=24% Similarity=0.177 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHH
Q 004235 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILE 589 (766)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~ 589 (766)
+-...+.+...++.|.++|-+.|..-+.+=--...+-+..+++|...|+.||.+
T Consensus 41 ~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 41 LRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566677777777777777776532100001122234455566666665544
No 168
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=60.33 E-value=3.1 Score=48.41 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|..++..-..+ +-.||.|||||+|+
T Consensus 197 AV~~al~~~~~~-lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 197 AVLFALSQKELA-IIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHHCSSEE-EEECCTTSCHHHHH
T ss_pred HHHHHhcCCCce-EEECCCCCCHHHHH
Confidence 455555433334 56699999999998
No 169
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=59.43 E-value=1.2e+02 Score=28.54 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L 614 (766)
.++...+.++..|+.+.+-+-.+|.++... .++...-.+.|+.+++.|..++.+.-.+-..-.+ .-.+-+..|..|
T Consensus 35 ERae~aE~k~~eLEeeL~~v~~nlKsLE~s-eekasqrEd~yEeqIk~L~~kLKEAE~RAE~AER---sv~kLEk~id~l 110 (155)
T 2efr_A 35 ERAELSEGKSAELEEELKTVTNNLKSLEAQ-AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER---SVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 333444444444444444444555444321 1222222345555555555555544433332222 222333445555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004235 615 QAEIQSIKAQKVQLQNKIK 633 (766)
Q Consensus 615 ~~Ei~~mK~~kV~L~kkmk 633 (766)
..++..-|.....+..-|.
T Consensus 111 Ed~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 111 EDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555554544444444333
No 170
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.32 E-value=43 Score=37.33 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 004235 607 SDEAAKRLQAEIQSIK 622 (766)
Q Consensus 607 ~e~~i~~L~~Ei~~mK 622 (766)
-+++|..|+.+|+.-.
T Consensus 115 LRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 171
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=59.02 E-value=3.4 Score=44.68 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| ++..++||||||.+.
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 4455677876 578899999999843
No 172
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=58.14 E-value=47 Score=27.50 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQER----DRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES 596 (766)
Q Consensus 537 l~eLe~ei~~lq~Er----d~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e 596 (766)
|.+|+.++...+... .+|..+-......+|+-.+.-=..|+--.+.|+..|.+|++...+
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444 333333333333444433333344555556666666666655444
No 173
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=57.92 E-value=93 Score=26.91 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHHH
Q 004235 605 HKSDEAAKRLQAEIQ 619 (766)
Q Consensus 605 ~k~e~~i~~L~~Ei~ 619 (766)
...+..+..|+.-|+
T Consensus 82 ~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 82 AKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 174
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=57.89 E-value=39 Score=29.78 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 538 MELEEEKRIVQQER----DRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVE 599 (766)
Q Consensus 538 ~eLe~ei~~lq~Er----d~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~ 599 (766)
.+|+.++...+.+. .+|..+-.......|+-.+..=..|+--++.|+..|.+|++...+...
T Consensus 25 eeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443 333333333333444433333344566667777777777766655443
No 175
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=57.58 E-value=4 Score=43.32 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.1
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| ++..++||||||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4566777877 466789999999875
No 176
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=57.56 E-value=5.4 Score=38.85 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=19.9
Q ss_pred hHhHHHHHhC--CcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~--G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 4444555442 33446667799999999876
No 177
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=57.48 E-value=3.9 Score=39.88 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=19.8
Q ss_pred hHHHHHhC-Cc--CEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~-G~--N~tI~aYGqTGSGKTyTm 98 (766)
+.++.++. |+ ...+.-+|++|||||+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 44566665 43 235666899999999887
No 178
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=57.41 E-value=3.7 Score=46.13 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=20.0
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|-+..++..++||||||++.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 345667774445678899999999973
No 179
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=57.24 E-value=50 Score=29.34 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004235 539 ELEEEKRIVQQERDRLLAEI 558 (766)
Q Consensus 539 eLe~ei~~lq~Erd~Ll~~l 558 (766)
+|..+...+..+|++|...+
T Consensus 17 ql~~qL~k~~~~r~~Le~~w 36 (112)
T 1x79_B 17 QANDQLEKTMKDKQELEDFI 36 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 180
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=57.17 E-value=2.7 Score=43.14 Aligned_cols=24 Identities=13% Similarity=0.020 Sum_probs=16.9
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++.|.++ +..++||||||.+.
T Consensus 122 i~~~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 122 VFEGLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHHHSEE--EECCCTTSCHHHHH
T ss_pred HHHHHhcCCe--EEEcCCCCCcHHHH
Confidence 4445556444 33899999999986
No 181
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=56.93 E-value=4 Score=39.56 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=21.8
Q ss_pred hHHHHHhC-CcC--EEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQ-GYN--ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~-G~N--~tI~aYGqTGSGKTyTm 98 (766)
+-+|.++. |+. ..++-+|++|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 55677775 553 46788999999999876
No 182
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=56.89 E-value=27 Score=29.93 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 526 TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 526 ~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
+..+...|+..|..|..+|..+..|+.++..++.++
T Consensus 47 ~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 47 KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999998888877664
No 183
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=56.83 E-value=38 Score=30.50 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 530 RHHFGKKIMELEEEKRIVQQERDR 553 (766)
Q Consensus 530 k~~ye~kl~eLe~ei~~lq~Erd~ 553 (766)
-.+|...|.+|+.+......++++
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~ 65 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQ 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777766555433
No 184
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=56.81 E-value=5.7 Score=38.50 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=20.5
Q ss_pred hHhHHHHHhC---CcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQ---GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~---G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+++.+.. +-...|...|++|||||+.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 3445555553 33456778899999999876
No 185
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=56.74 E-value=2.8 Score=46.07 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.3
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
|.-++.+|+||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 445688999999999987
No 186
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=56.56 E-value=4.9 Score=45.40 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=20.9
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++..++.|-+--+++.++||||||.+.
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 456667665667788999999999874
No 187
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=56.04 E-value=5.5 Score=44.40 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=21.4
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..++..+-.+....++-||++|+|||+..
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 34555554555667788999999999977
No 188
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=55.85 E-value=4.1 Score=42.74 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=27.4
Q ss_pred EcceeeCCCCCchhhhhhhhhHhHHHHHh--CCcCEEEEeecccCCCCcccc
Q 004235 49 TFDHVYGNGGSPSSAMFGECVAPLVDGLF--QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 49 ~FD~Vf~~~~s~q~~vy~~~v~plV~~~l--~G~N~tI~aYGqTGSGKTyTm 98 (766)
+|+.+.+. +.+... +..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG~-----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQ-----ESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSC-----HHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCCh-----HHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 56666643 233332 344444443 344557899999999999876
No 189
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=55.82 E-value=5.1 Score=39.06 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=21.0
Q ss_pred hHHHHHhC-Cc--CEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~-G~--N~tI~aYGqTGSGKTyTm 98 (766)
|-+|.++. |+ ...+.-+|++|||||+.+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 55677774 43 346778899999999986
No 190
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.78 E-value=2.1e+02 Score=31.12 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=12.3
Q ss_pred hhhhhhhhHhHHHHHhCCcCEEEEe
Q 004235 62 SAMFGECVAPLVDGLFQGYNATVLA 86 (766)
Q Consensus 62 ~~vy~~~v~plV~~~l~G~N~tI~a 86 (766)
...++..+...-+. -|+.+.+..
T Consensus 31 ~~~~~~~i~~Fe~~--~gI~V~~~~ 53 (471)
T 3mq9_A 31 YNGLAEVGKKFEKD--TGIKVTVEH 53 (471)
T ss_dssp HHHHHHHHHHHHHH--HCCCEEEEC
T ss_pred cHHHHHHHHHHhhC--cCCEEEEEe
Confidence 34555555444433 377776654
No 191
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=55.68 E-value=4.4 Score=44.45 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=19.2
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| +++.++||||||.+.
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHHH
Confidence 4555678877 477789999999864
No 192
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=55.63 E-value=5.5 Score=45.89 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=20.2
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+|..++.|.| +++.++||||||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 34566778888 577889999999864
No 193
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.34 E-value=4.5 Score=41.71 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=17.4
Q ss_pred HHhCCcCEEEEeecccCCCCcccc
Q 004235 75 GLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 75 ~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+-.|.-..++-||++|+|||++.
T Consensus 36 ~l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 36 IAKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HHHSCCCCCEEEECSTTSSHHHHH
T ss_pred HHHcCCCCeEEEECcCCCCHHHHH
Confidence 333454333889999999999876
No 194
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=54.96 E-value=1.1e+02 Score=27.06 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004235 577 TLKLKALEAQILELKKKQE 595 (766)
Q Consensus 577 ~~kl~~Le~el~~Lk~k~~ 595 (766)
.+++++|+.+|..|..+++
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788888888776554
No 195
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=54.88 E-value=2.9 Score=44.45 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=18.7
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4455667877 466789999999874
No 196
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.87 E-value=3.3 Score=39.25 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=14.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.+.-.|++|||||+.+
T Consensus 11 i~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999998
No 197
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=54.80 E-value=4.6 Score=42.21 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=17.4
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++.|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 444556633 3467799999999875
No 198
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=54.67 E-value=3 Score=44.14 Aligned_cols=16 Identities=44% Similarity=0.482 Sum_probs=14.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999987
No 199
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=54.54 E-value=2.4 Score=47.64 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.9
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-||++|+|||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999876
No 200
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=54.16 E-value=5 Score=39.62 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=18.7
Q ss_pred hHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++++++-.|-- +.-.|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 45566655554 444799999999987
No 201
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.11 E-value=72 Score=26.63 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004235 405 DEVQVLKGRIAWLEATNEDLCQELHEYRSRRAV 437 (766)
Q Consensus 405 ~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 437 (766)
.+.+.++.....|..+|..|..+...+..|+..
T Consensus 41 ~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 41 QEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556777777777777777776653
No 202
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=54.01 E-value=4.4 Score=42.05 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=27.4
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHh--CCcCEEEEeecccCCCCcccc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLF--QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l--~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+|+.+.+.+ .+... +..++..+. .+....|+-||++|+|||+..
T Consensus 8 p~~~~~~ig~~-----~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 8 PKTLDEYIGQE-----RLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCSTTTCCSCH-----HHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cccHHHhhCHH-----HHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 34677766532 22222 333344333 234567888999999999876
No 203
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=53.51 E-value=6 Score=43.85 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=22.4
Q ss_pred chhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 60 ~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|..++. .++..+..|- ..++..|..|||||+++
T Consensus 29 ~Q~~av~----~~~~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 29 GQKNAFN----IVMKAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp HHHHHHH----HHHHHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred HHHHHHH----HHHHHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 3555443 3344444443 37888999999999887
No 204
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=53.48 E-value=4.1 Score=45.25 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=21.7
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.++...+-.|.-..|+-||++|+|||+..
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 44444445565568999999999999876
No 205
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=53.45 E-value=4.3 Score=44.91 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=19.2
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++.|.+. +++.|+||||||.+.
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 4566788775 456799999999973
No 206
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=53.37 E-value=2.1 Score=48.43 Aligned_cols=47 Identities=28% Similarity=0.351 Sum_probs=28.0
Q ss_pred eeEEcceeeCCCCCchhhhhhhhhHhHHHH-----HhCCc----CEEEEeecccCCCCcccc
Q 004235 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDG-----LFQGY----NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plV~~-----~l~G~----N~tI~aYGqTGSGKTyTm 98 (766)
..++|+.|.+.+.. -.. +..++.. .+..+ ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~-k~~-----l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEA-KEE-----LKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHH-HHH-----HHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHH-HHH-----HHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 46788888865321 112 2333332 22222 224899999999999987
No 207
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=53.21 E-value=5.2 Score=44.71 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=18.9
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4455677877 466789999999874
No 208
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=52.98 E-value=3.8 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.2
Q ss_pred HhCCcCEEEEeecccCCCCcccc
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++.|++-+|...|++|+|||+.|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 58899999999999999999876
No 209
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=52.53 E-value=1.6e+02 Score=27.98 Aligned_cols=48 Identities=25% Similarity=0.238 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 501 ~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
.+...++.+.+...|..++.+ ..++..|+.....|++|...|-.+|..
T Consensus 33 kK~~tEl~k~~~~~E~~~rEL------------q~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 33 RKSHTEMSKSISQLESLNREL------------QERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444332 255667777777777777777776654
No 210
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.27 E-value=1.5e+02 Score=27.71 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 004235 602 KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKL 667 (766)
Q Consensus 602 k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L 667 (766)
..+...+....++..|+..|-+.--.--.+|=.+. |......++.+.+|+++..-.+.-+..|
T Consensus 72 ~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a---r~~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 72 ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA---RKEKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888888888877666666665443 2333344444444444444443333333
No 211
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=51.59 E-value=5 Score=41.95 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=19.0
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..+. ..+..|+-||++|+|||+..
T Consensus 17 ~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 17 EIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred HHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 334433 44667899999999999865
No 212
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=51.42 E-value=1.8e+02 Score=31.11 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 671 NQRQKMVLQRKTEEAAIATKRLKELLE 697 (766)
Q Consensus 671 ~~~q~~vLkrK~eEa~a~~krlk~~l~ 697 (766)
-+++-..||++...-..-.+.|+.-|+
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~ 144 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVR 144 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333444444444444444444444443
No 213
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=51.37 E-value=1.4e+02 Score=32.63 Aligned_cols=6 Identities=0% Similarity=0.241 Sum_probs=2.5
Q ss_pred hcceee
Q 004235 141 LKEEVR 146 (766)
Q Consensus 141 ynE~v~ 146 (766)
||..++
T Consensus 131 YNkdl~ 136 (471)
T 3mq9_A 131 YNKDLL 136 (471)
T ss_dssp EETTTC
T ss_pred EEhHHh
Confidence 444333
No 214
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.34 E-value=4.1 Score=42.91 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=14.0
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999987
No 215
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=51.26 E-value=5.8 Score=44.15 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=18.2
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445567877 466789999999874
No 216
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=51.26 E-value=81 Score=27.14 Aligned_cols=54 Identities=31% Similarity=0.314 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 502 KELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 502 ~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
.|--+|.+.++..|++...+ ......+..++.+|+.+++.|..|...|+.+=+-
T Consensus 37 qEYl~LE~~~s~le~e~~rl-----r~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRL-----RLESKRLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456777777777665433 3345567889999999999999999999877443
No 217
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=51.22 E-value=5 Score=46.34 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.4
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
+..++..|++|||||+|+
T Consensus 164 ~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTV 181 (608)
T ss_dssp BSEEEEECCTTSTHHHHH
T ss_pred CCCEEEEeCCCCCHHHHH
Confidence 346788999999999987
No 218
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=51.03 E-value=77 Score=27.24 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQER----DRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQV 598 (766)
Q Consensus 537 l~eLe~ei~~lq~Er----d~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~ 598 (766)
|.+|+.++...+... .+|..+-.......|+-.+..=..|+--++.|+..|++|++...+..
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544443 33333333333344433333334455556666666666666555443
No 219
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=50.87 E-value=4.3 Score=42.44 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=17.0
Q ss_pred HhCCcCEEEEeecccCCCCcccc
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++.|++..|...|++|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 67899999999999999999877
No 220
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=50.60 E-value=4.5 Score=37.28 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999864
No 221
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=50.25 E-value=4.3 Score=38.65 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.3
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|++|||||+.+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 222
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=50.20 E-value=53 Score=31.52 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=29.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004235 571 KMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQK 625 (766)
Q Consensus 571 kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~k 625 (766)
+|.++|+.+..+|..++...+ .+...|+....=.+.+|+.|..||.+++.+.
T Consensus 78 ~I~~e~r~~~~~Lr~ql~akr---~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 78 KIYDDYYTQTSALRQQLISKR---YEYNALLTASSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344455555555554443333 3334444444456677777777777766554
No 223
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=50.12 E-value=5 Score=39.63 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=18.9
Q ss_pred HHHHhCC-c--CEEEEeecccCCCCcccc
Q 004235 73 VDGLFQG-Y--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G-~--N~tI~aYGqTGSGKTyTm 98 (766)
+|.++.| + ...++-+|++|||||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4666543 3 346778899999999985
No 224
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.11 E-value=23 Score=27.12 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=26.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004235 401 GAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRR 435 (766)
Q Consensus 401 ~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 435 (766)
+.+..++..|+.++..|..++..|..++.++.+++
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888888888888877777654
No 225
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=50.01 E-value=4.3 Score=38.99 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.1
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4555699999999887
No 226
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.93 E-value=44 Score=30.64 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 004235 543 EKRIVQQERDRLLAEI 558 (766)
Q Consensus 543 ei~~lq~Erd~Ll~~l 558 (766)
+...++.|.++|=+.|
T Consensus 68 ~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 68 EADKLNKEVEDLTASL 83 (135)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 227
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=49.87 E-value=3.9 Score=43.70 Aligned_cols=18 Identities=44% Similarity=0.660 Sum_probs=15.3
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999975
No 228
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=49.86 E-value=4.5 Score=48.74 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=22.2
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+++.+..+....++-||++|+|||+.+
T Consensus 179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 445555555565556788999999999987
No 229
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=49.86 E-value=5.8 Score=43.73 Aligned_cols=25 Identities=24% Similarity=0.133 Sum_probs=18.5
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.+ ++..|+||||||.+.
T Consensus 101 ai~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 101 ALERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 3455666654 566799999999986
No 230
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=49.63 E-value=4.4 Score=39.61 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.6
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|++|||||+++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4666799999999987
No 231
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=49.45 E-value=6.1 Score=41.75 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.0
Q ss_pred cCEEEEeecccCCCCcccc
Q 004235 80 YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (766)
....++-||++|+|||++.
T Consensus 37 ~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CCSEEEEESCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456889999999999986
No 232
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=49.28 E-value=1.1e+02 Score=25.29 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004235 571 KMQDGHTLKLKALEAQILELKKKQES----QVELLKQKHKSDEAAKRLQAEIQSIK 622 (766)
Q Consensus 571 kl~e~~~~kl~~Le~el~~Lk~k~~e----~~~l~k~k~k~e~~i~~L~~Ei~~mK 622 (766)
||+-..+.++.+...+|..|++.+.+ +++|..+-.+.+.....|..+|.-+|
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34334444555555666666554444 33444443344444444444444433
No 233
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=49.27 E-value=4.3 Score=43.49 Aligned_cols=18 Identities=44% Similarity=0.672 Sum_probs=15.5
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999876
No 234
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=49.12 E-value=7.6 Score=44.24 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=20.0
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+|..++.|-+.-+++.++||||||.+.
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 455666555556788899999999864
No 235
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=49.00 E-value=1.2e+02 Score=25.54 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=4.7
Q ss_pred HHHHhhhHHHHHH
Q 004235 601 LKQKHKSDEAAKR 613 (766)
Q Consensus 601 ~k~k~k~e~~i~~ 613 (766)
.+.+..-+.++..
T Consensus 69 ~~~K~eLE~~l~e 81 (89)
T 3bas_A 69 LSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 236
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=48.81 E-value=4.7 Score=41.53 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=16.1
Q ss_pred cCEEEEeecccCCCCcccc
Q 004235 80 YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (766)
|+-+|...|++|||||+.|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4567888999999999877
No 237
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=48.53 E-value=6.2 Score=44.48 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=19.7
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..++..++.|. .|+-||++|+|||+..
T Consensus 32 ~~l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCC--eeEeecCchHHHHHHH
Confidence 34444555554 5788999999999986
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=48.40 E-value=9.8 Score=40.39 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.0
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|.-.|++|||||+|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346677799999999998
No 239
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=48.24 E-value=6.6 Score=45.62 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=19.4
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+|..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 4555677877 567799999999876
No 240
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=48.20 E-value=6.1 Score=45.76 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=18.0
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|..++. +..++..|++|||||+|+
T Consensus 188 av~~~l~--~~~~li~GppGTGKT~~~ 212 (624)
T 2gk6_A 188 AVKTVLQ--RPLSLIQGPPGTGKTVTS 212 (624)
T ss_dssp HHHHHHT--CSEEEEECCTTSCHHHHH
T ss_pred HHHHHhc--CCCeEEECCCCCCHHHHH
Confidence 4455553 234677899999999997
No 241
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=47.94 E-value=8.4 Score=40.10 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=15.5
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
+-...|.-.|++|||||+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456677799999999876
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=47.41 E-value=4.4 Score=38.79 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=12.7
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999987
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=47.35 E-value=8.5 Score=45.95 Aligned_cols=77 Identities=21% Similarity=0.300 Sum_probs=46.6
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhCCcC----EEEEeecccCCCCcccc---CCCCC-----------CCCc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQGYN----ATVLAYGQTGSGKTYTM---GTGLR-----------EGFQ 107 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~G~N----~tI~aYGqTGSGKTyTm---~g~~~-----------~~~~ 107 (766)
..+||.|-+-+. .-..+.+.+.-|+.. .+|.++. ..|+-||+.|+|||+.. .+..+ .+..
T Consensus 200 ~v~~~dIgGl~~-~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 200 EVGYDDIGGCRK-QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SCCGGGCCSCCT-THHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCChhhhcCHHH-HHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 356776666543 234555544445543 4556554 36999999999999765 11110 1233
Q ss_pred ccchHHHHHHHHHHHHh
Q 004235 108 TGLIPQVMNALFNKIET 124 (766)
Q Consensus 108 ~Giipr~~~~LF~~i~~ 124 (766)
.|-....++.+|.....
T Consensus 279 ~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEK 295 (806)
T ss_dssp TTHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHH
Confidence 56677888889987654
No 244
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.30 E-value=43 Score=36.46 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 004235 608 DEAAKRLQAEIQSIK 622 (766)
Q Consensus 608 e~~i~~L~~Ei~~mK 622 (766)
+..-++|.++|++||
T Consensus 44 ~~~rr~l~n~~~elk 58 (403)
T 4etp_A 44 ETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 344567788888776
No 245
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=47.10 E-value=4.5 Score=39.31 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|++|||||+++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999988
No 246
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=47.05 E-value=1.2e+02 Score=25.20 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L 614 (766)
+.|+.|.-++..++.||-. |++||+.-..+|+.|+..+. -.+..++.|
T Consensus 26 qEi~~Lr~kv~elEnErlQ----------------------yEkKLKsTK~El~~Lq~qLe----------~kd~ei~rL 73 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQ----------------------YEWKLKATKAEVAQLQEQVA----------LKDAEIERL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHhhhHHHHHHHHHHHH----------hhHHHHHHH
Q ss_pred HHHH
Q 004235 615 QAEI 618 (766)
Q Consensus 615 ~~Ei 618 (766)
+.++
T Consensus 74 ~~~l 77 (81)
T 3qh9_A 74 HSQL 77 (81)
T ss_dssp HHHH
T ss_pred HHHH
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=47.03 E-value=5.6 Score=37.71 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.4
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777899999999976
No 248
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=46.96 E-value=4.4 Score=43.81 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=14.9
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.| ++..|+||||||+++
T Consensus 34 ~~~~--~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSN--WTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCC--EEEECCTTSSHHHHH
T ss_pred ccCc--eEEEcCCCCCHHHHH
Confidence 3445 466799999999988
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=46.33 E-value=10 Score=45.38 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=43.8
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHH-HHhCC----cCEEEEeecccCCCCcccc---CCCCC-----------CCCc
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQG----YNATVLAYGQTGSGKTYTM---GTGLR-----------EGFQ 107 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~-~~l~G----~N~tI~aYGqTGSGKTyTm---~g~~~-----------~~~~ 107 (766)
.++||.|.+.+. .-..+.+.+..|+.. .+|.. -...|+-||++|||||+.+ .|-.+ .+..
T Consensus 200 ~v~~~di~G~~~-~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 200 EVGYDDVGGCRK-QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SCCGGGCCSCSG-GGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCHHHhCChHH-HHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 477888877543 234444443333322 22322 2346899999999999876 11110 1123
Q ss_pred ccchHHHHHHHHHHHHh
Q 004235 108 TGLIPQVMNALFNKIET 124 (766)
Q Consensus 108 ~Giipr~~~~LF~~i~~ 124 (766)
.|-....+..+|.....
T Consensus 279 ~g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEK 295 (806)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 45666777888877654
No 250
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=45.74 E-value=83 Score=25.15 Aligned_cols=52 Identities=10% Similarity=0.012 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 377 ISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQEL 428 (766)
Q Consensus 377 ~~~~i~~L~~~i~~l~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l 428 (766)
.......|+.++..|+.|+.....-.....-..|+.++..|.++++.+...+
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l 55 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEI 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788999999999998654332222334455556665555555554444
No 251
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=45.49 E-value=10 Score=44.90 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=22.3
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++..+..+....|+-||++|+|||...
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 344555555566667899999999999876
No 252
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=45.35 E-value=5.3 Score=40.29 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=15.6
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..||..|..|+||||+|
T Consensus 7 l~I~~~~kgGvGKTt~a 23 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAM 23 (228)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCcHHHHH
Confidence 56899999999999998
No 253
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=45.22 E-value=8.2 Score=44.81 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=18.1
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++.|.|+ +..++||||||...
T Consensus 22 i~~~l~g~~~--iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKNT--IICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Confidence 3445678774 67789999999864
No 254
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=45.18 E-value=18 Score=42.08 Aligned_cols=89 Identities=21% Similarity=0.383 Sum_probs=49.5
Q ss_pred eEEcceeeCCCCCchhhhhhhhhHhHHHHHhCCcCEEEEeecccCCCCccccCCCCCCCCcccch----HHHHHHHHHHH
Q 004235 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLI----PQVMNALFNKI 122 (766)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plV~~~l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Gii----pr~~~~LF~~i 122 (766)
.|..-.=|.|.+. |..-+ ..+++++-.|... ....|.|||||||||..-......+-|| ......|++.+
T Consensus 4 ~~~~~~~~~p~~~-Q~~~i----~~l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el 77 (661)
T 2d7d_A 4 RFELVSKYQPQGD-QPKAI----EKLVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEF 77 (661)
T ss_dssp CCCCCCSCCCCTT-HHHHH----HHHHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHH
T ss_pred cceeecCCCCCCC-CHHHH----HHHHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHH
Confidence 3666666777665 54443 3467777777543 3456999999999994211100011111 13455566666
Q ss_pred HhccccceeeEEeehhhhh
Q 004235 123 ETLRHQMEFQLHVSFIEIL 141 (766)
Q Consensus 123 ~~~~~~~~~~v~vS~~EIy 141 (766)
...-....+....||+--|
T Consensus 78 ~~~~~~~~v~~fps~yd~~ 96 (661)
T 2d7d_A 78 KEFFPNNAVEYFVSYYDYY 96 (661)
T ss_dssp HHHCTTSEEEEECCCEEEE
T ss_pred HHHcCCCcEEEcccccccc
Confidence 5543344566777764444
No 255
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=45.15 E-value=3.6e+02 Score=29.91 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004235 628 LQNKIKQEAEQFRQW-----KASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSS 702 (766)
Q Consensus 628 L~kkmkee~~~~r~~-----k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa~a~~krlk~~l~~~k~~ 702 (766)
|.++..||..+.++| ....++|..++|.|.-.....+.+.+....+-..|+.-.--++-++|+.|.+++...+.-
T Consensus 296 lkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f 375 (551)
T 2b5u_A 296 VKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQF 375 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhh
Confidence 344555555666666 344555555555554433333333332212222566554556678999999999876655
Q ss_pred hhh
Q 004235 703 ARE 705 (766)
Q Consensus 703 ~~~ 705 (766)
.+.
T Consensus 376 ~~~ 378 (551)
T 2b5u_A 376 NRF 378 (551)
T ss_dssp GGG
T ss_pred hhh
Confidence 533
No 256
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=45.05 E-value=1.1e+02 Score=24.86 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 004235 613 RLQAEIQSI 621 (766)
Q Consensus 613 ~L~~Ei~~m 621 (766)
.|+.||+.|
T Consensus 67 ~L~~el~sl 75 (77)
T 3trt_A 67 SLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 334444443
No 257
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=44.90 E-value=5.4 Score=38.25 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=12.9
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999987
No 258
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=44.89 E-value=6.3 Score=36.75 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.0
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-.|.+|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35788999999999854
No 259
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=44.61 E-value=6.1 Score=41.50 Aligned_cols=17 Identities=47% Similarity=0.636 Sum_probs=14.3
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999998
No 260
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.45 E-value=1.6e+02 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 534 GKKIMELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
..++..|..++..++.+..++...+..
T Consensus 19 ~~~~~~l~~q~~~l~~~~~e~~~~~~e 45 (117)
T 2zqm_A 19 QQQLQLVVQQKQKVQLELTEAKKALDE 45 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666555444444333
No 261
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=44.39 E-value=6.5 Score=37.13 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999754
No 262
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=44.35 E-value=6.5 Score=41.19 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=14.7
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|.-.|++|||||+|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 36677899999999998
No 263
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=43.80 E-value=1.6e+02 Score=25.36 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004235 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQE 595 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~ 595 (766)
+..+..|..++..++.+.|.+...+... ..++. .-++.....|.+++.|.++.+
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a-------~~kLe-~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEA-------QEKLE-QAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655555432 12332 245666777777777766543
No 264
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.66 E-value=1.6e+02 Score=25.43 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
.++..|...+..+..+...+...+...
T Consensus 17 ~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 17 EERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555554444443
No 265
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=43.63 E-value=9.7 Score=45.03 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=15.1
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
+.|+-||+||+|||++.
T Consensus 522 ~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 37999999999999976
No 266
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=43.50 E-value=9.9 Score=44.89 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=22.3
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+++.+.......++-||++|+|||+..
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 344555555556666788999999999987
No 267
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=43.48 E-value=7.9 Score=46.13 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=21.9
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+..++-.|....++..|+||||||...
T Consensus 377 i~~I~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 377 HQEIRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHHHHhhccccCCCcEEEEcCCCCCHHHHH
Confidence 344555555666566788999999999875
No 268
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=43.46 E-value=7.8 Score=41.81 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=17.8
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.| .++..++||+|||.+.
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHH
Confidence 34556777 3455689999999987
No 269
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.29 E-value=9.6 Score=42.91 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=15.2
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57888999999999987
No 270
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=43.17 E-value=6.4 Score=45.32 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.3
Q ss_pred cCEEEEeecccCCCCcccc
Q 004235 80 YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (766)
.++.++..|..|||||+|+
T Consensus 21 ~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp CSSCEEEEECTTSCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHH
Confidence 3566788999999999998
No 271
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=42.98 E-value=7.5 Score=38.39 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=9.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|++|||||+++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999987
No 272
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=42.98 E-value=6.5 Score=37.71 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.4
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999876
No 273
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=42.95 E-value=10 Score=35.24 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=22.0
Q ss_pred HhHHHHHhC-CcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~-G~N~tI~aYGqTGSGKTyTm 98 (766)
..++..+|. .....|...|.+|+|||..+
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 344555665 56778899999999999876
No 274
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=42.77 E-value=5.6 Score=42.72 Aligned_cols=20 Identities=40% Similarity=0.383 Sum_probs=15.1
Q ss_pred hCCcCEEEEeecccCCCCcccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm 98 (766)
-.|.+. .-.|+||||||+++
T Consensus 173 ~~G~~i--~ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVI--VVAGETGSGKTTLM 192 (361)
T ss_dssp HTTCCE--EEEESSSSCHHHHH
T ss_pred hcCCEE--EEECCCCCCHHHHH
Confidence 356654 44599999999987
No 275
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=42.69 E-value=6.6 Score=38.82 Aligned_cols=16 Identities=56% Similarity=0.636 Sum_probs=13.6
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.+.-+|++|||||+.+
T Consensus 32 ~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4556899999999987
No 276
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=42.68 E-value=11 Score=44.33 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=15.4
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
+.|+-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999876
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=42.62 E-value=7.2 Score=36.49 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=13.9
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|.+|||||+..
T Consensus 5 ~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIV 20 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999865
No 278
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=42.59 E-value=5.5 Score=42.28 Aligned_cols=19 Identities=53% Similarity=0.704 Sum_probs=15.0
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|-+ |.-.|+||||||+++
T Consensus 170 ~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCC--EEEEESTTSCHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 4654 556799999999987
No 279
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=42.56 E-value=93 Score=23.64 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004235 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSI 621 (766)
Q Consensus 577 ~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~m 621 (766)
+.++.+|..++..|.++... |.........+|..|+.+|..+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~r---L~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSK---LMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 55667788888777766553 3334445666677777776654
No 280
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=42.44 E-value=1.7e+02 Score=27.30 Aligned_cols=33 Identities=9% Similarity=0.229 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 529 LRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (766)
Q Consensus 529 ~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (766)
+...|...+..++.+...|+-+..+++.+....
T Consensus 30 l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q 62 (150)
T 4dci_A 30 AEREISNGIANADQQLAQLEQEGQTVVDQVRRQ 62 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666777777777777777777777777653
No 281
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=42.17 E-value=6.8 Score=37.22 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566799999999987
No 282
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=41.85 E-value=46 Score=27.02 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 004235 572 MQDGHTLKLKALEAQILELKKKQE 595 (766)
Q Consensus 572 l~e~~~~kl~~Le~el~~Lk~k~~ 595 (766)
.++..+..+++||.++.+|.....
T Consensus 23 fReRK~~~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 23 FRKRKEDHLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667788888888888876433
No 283
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=41.70 E-value=28 Score=39.80 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=3.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 004235 596 SQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (766)
Q Consensus 596 e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~ 624 (766)
.-.+|....++.+....+|+.++...+..
T Consensus 420 ~~~~~~~~~~~~~~e~~~~~~~~~~a~~~ 448 (575)
T 2i1j_A 420 EVSRIQQEVELKDSETRRLQEEVEDARRK 448 (575)
T ss_dssp ----------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666655543
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=41.60 E-value=6.8 Score=40.89 Aligned_cols=17 Identities=41% Similarity=0.769 Sum_probs=14.3
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|...|++|+|||+|+
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35666799999999998
No 285
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=41.47 E-value=10 Score=46.50 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=18.1
Q ss_pred HHHHHhCCcCEEEEeecccCCCCccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYT 97 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyT 97 (766)
+|..++.|.+ ++..|+||||||.+
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 3455677754 67889999999954
No 286
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=41.43 E-value=2e+02 Score=25.80 Aligned_cols=55 Identities=16% Similarity=0.304 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ 634 (766)
Q Consensus 577 ~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmke 634 (766)
..+++.|+.++..|.+ .|.+++.+.++..+.+-.+|... ..|+.+-..=+.+|..
T Consensus 8 ~~~l~~Leae~q~L~~--~E~qry~~eka~AE~A~~~La~~-~~l~~~i~er~~~i~~ 62 (119)
T 3etw_A 8 VGELQALDAEYQNLAN--QEEARFNEERAQADAARQALAQN-EQVYNELSQRAQRLQA 62 (119)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5567888888888875 45677777777777777777554 5555554444444433
No 287
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=41.42 E-value=3.3e+02 Score=30.06 Aligned_cols=9 Identities=33% Similarity=0.394 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 004235 610 AAKRLQAEI 618 (766)
Q Consensus 610 ~i~~L~~Ei 618 (766)
.|..|+..+
T Consensus 169 ~i~~L~~~~ 177 (464)
T 1m1j_B 169 SLRVLRAVI 177 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333343333
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=41.19 E-value=7.2 Score=36.72 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.7
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778999999999865
No 289
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=41.16 E-value=9.1 Score=45.76 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=17.9
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|..++. +..++..|+.|||||+|+
T Consensus 368 Av~~~l~--~~~~lI~GppGTGKT~~i 392 (802)
T 2xzl_A 368 AVSHVLQ--RPLSLIQGPPGTGKTVTS 392 (802)
T ss_dssp HHHHHTT--CSEEEEECSTTSSHHHHH
T ss_pred HHHHHhc--CCCEEEECCCCCCHHHHH
Confidence 3444443 234677999999999997
No 290
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=41.09 E-value=6.7 Score=44.34 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=18.6
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+|..++.|.++ +..++||||||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 45566788875 55679999999864
No 291
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.90 E-value=1.6e+02 Score=24.58 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 004235 609 EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERH 665 (766)
Q Consensus 609 ~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~ 665 (766)
..|.-|+-||..+|.....|- ++.+..+.-+....+|+.||+.+..--+..+.
T Consensus 20 dtI~lLqmEieELKekN~~L~----~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLS----QEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888887664 44455555566677777777755444433333
No 292
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=40.68 E-value=7.4 Score=37.82 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
++.-.|++|||||+++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999987
No 293
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=40.25 E-value=8.7 Score=35.59 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
..+-||++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3457899999999876
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=40.19 E-value=10 Score=36.44 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.0
Q ss_pred cCEEEEeecccCCCCcccc
Q 004235 80 YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (766)
-...|.-.|++|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456777899999999865
No 295
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=39.85 E-value=8.2 Score=39.07 Aligned_cols=15 Identities=53% Similarity=0.572 Sum_probs=12.7
Q ss_pred EEEeecccCCCCccc
Q 004235 83 TVLAYGQTGSGKTYT 97 (766)
Q Consensus 83 tI~aYGqTGSGKTyT 97 (766)
.|+..|++|||||+.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467889999999974
No 296
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=39.80 E-value=9.9 Score=43.58 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=18.4
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|..++.+ ..++..|+.|||||+|+
T Consensus 197 Av~~~~~~--~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 197 VLDQLAGH--RLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp HHHHHTTC--SEEEEECCTTSCHHHHH
T ss_pred HHHHHHhC--CEEEEEcCCCCCHHHHH
Confidence 44455543 45677899999999998
No 297
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=39.75 E-value=1.4e+02 Score=25.50 Aligned_cols=60 Identities=8% Similarity=-0.001 Sum_probs=41.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004235 375 DLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSR 434 (766)
Q Consensus 375 d~~~~~i~~L~~~i~~l~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 434 (766)
.........|+.|+..|+.|+.....-.....-..|+.++..|.++++.+...+...+..
T Consensus 19 s~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~ 78 (93)
T 3sjb_C 19 NELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKA 78 (93)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999998654333333344567777777777777777777665543
No 298
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=39.72 E-value=9.9 Score=41.71 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.7
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999984
No 299
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.71 E-value=67 Score=23.26 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 534 GKKIMELEEEKRIVQQERDRLLAEIE 559 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~ 559 (766)
+.+..+|++.+..|+.|...|.+-+.
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 46788999999999999887776553
No 300
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.55 E-value=4e+02 Score=28.89 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 004235 577 TLKLKALEAQILELKK 592 (766)
Q Consensus 577 ~~kl~~Le~el~~Lk~ 592 (766)
-++.+.|..++..|..
T Consensus 83 tq~skkml~~~~~~e~ 98 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYEN 98 (409)
T ss_dssp HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555566666666544
No 301
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=39.52 E-value=68 Score=22.38 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 532 HFGKKIMELEEEKRIVQQERDRLLAEIE 559 (766)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~~l~ 559 (766)
|.+.|+.+|..++..|+.|..+|..-+.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4567788888888888888777766554
No 302
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=39.40 E-value=12 Score=42.13 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=14.6
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|.-.|++|||||+++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 36677799999999998
No 303
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=39.31 E-value=10 Score=45.36 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=18.0
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|..++.+ ..++..|++|||||+|+
T Consensus 364 Av~~~l~~--~~~lI~GppGTGKT~ti 388 (800)
T 2wjy_A 364 AVKTVLQR--PLSLIQGPPGTGKTVTS 388 (800)
T ss_dssp HHHHHHTS--SEEEEECCTTSCHHHHH
T ss_pred HHHHhccC--CeEEEEcCCCCCHHHHH
Confidence 34444443 34677899999999997
No 304
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=39.24 E-value=7.4 Score=36.64 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.3
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999876
No 305
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=39.08 E-value=1.8e+02 Score=24.83 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004235 538 MELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
..|+.++..+..|-.+|+++|..
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~ 29 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELED 29 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 306
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=39.03 E-value=1.2e+02 Score=24.88 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 004235 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK 591 (766)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk 591 (766)
.++|+..|+.-+..||.---+|+++..+. ..|| .+|+..||.++..+.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ss-------Q~KL----KqRit~LE~~~~~~~ 52 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESM-------QQKL----KQRLTKVEKFLKPLI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHhcccC
Confidence 46888999999999999999999988763 2344 567788888776543
No 307
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=38.97 E-value=7.1 Score=38.50 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.5
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
+.-.|++|||||+.+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999987
No 308
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=38.93 E-value=8.9 Score=41.28 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=14.8
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|.-.|++|||||+|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 36777899999999998
No 309
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=38.90 E-value=13 Score=39.46 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=22.3
Q ss_pred hHHHHHhC-Cc--CEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~-G~--N~tI~aYGqTGSGKTyTm 98 (766)
+-+|.++. |+ ...+.-||++|||||..+
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 55788886 44 456788999999999876
No 310
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=38.87 E-value=7 Score=39.14 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=15.2
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...++-||++|||||..+
T Consensus 12 G~i~litG~mGsGKTT~l 29 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL 29 (223)
T ss_dssp CEEEEEECSTTSCHHHHH
T ss_pred cEEEEEECCCCCcHHHHH
Confidence 356788899999999887
No 311
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=38.86 E-value=8.1 Score=37.17 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.1
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.++-||+.|||||+.+
T Consensus 5 i~vi~G~~gsGKTT~l 20 (184)
T 2orw_A 5 LTVITGPMYSGKTTEL 20 (184)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999987
No 312
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=38.85 E-value=12 Score=44.63 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=19.1
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 4555678877 466789999999875
No 313
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=38.83 E-value=13 Score=41.16 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=25.4
Q ss_pred EEEEeecccCCCCcccc------CC-CC--------CCCCcccc-hHHHHHHHHHHH
Q 004235 82 ATVLAYGQTGSGKTYTM------GT-GL--------REGFQTGL-IPQVMNALFNKI 122 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm------~g-~~--------~~~~~~Gi-ipr~~~~LF~~i 122 (766)
..|+-||++|+|||+.. .| ++ ......|- ++..+..+|...
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a 107 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHH
Confidence 45899999999999874 11 11 11112343 677888888654
No 314
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=38.59 E-value=64 Score=22.23 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 532 HFGKKIMELEEEKRIVQQERDRLLAE 557 (766)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~~ 557 (766)
+.+.|+.+|-.++..|+.|..+|..-
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45677777777777777777766543
No 315
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=38.30 E-value=7.9 Score=37.54 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.7
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|++|||||+++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3566799999999988
No 316
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=38.26 E-value=8.5 Score=39.28 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.6
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|+...|+..|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588999999999999999765
No 317
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=38.14 E-value=9.1 Score=36.85 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.8
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|++|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999875
No 318
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=38.06 E-value=8.5 Score=42.82 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=17.6
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
|..++.|.+ ++..|+||||||.+.
T Consensus 122 i~~~~~~~~--~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 122 VFEGLVNRR--RILNLPTSAGRSLIQ 145 (510)
T ss_dssp HHHHHHHSE--EEEECCSTTTHHHHH
T ss_pred HHHHHhcCC--cEEEeCCCCCHHHHH
Confidence 444555644 466799999999986
No 319
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.86 E-value=2e+02 Score=24.82 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQERDR 553 (766)
Q Consensus 537 l~eLe~ei~~lq~Erd~ 553 (766)
...++.++..+++....
T Consensus 26 ~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 26 IGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555444433
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=37.75 E-value=8.7 Score=36.13 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.7
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|+.|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999864
No 321
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=37.70 E-value=12 Score=45.56 Aligned_cols=25 Identities=44% Similarity=0.599 Sum_probs=19.1
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.|+ +..++||||||.+.
T Consensus 256 ai~~il~g~~~--ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKNA--LICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHcCCCE--EEEeCCCchHHHHH
Confidence 44556788874 56789999999885
No 322
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=37.69 E-value=1.2e+02 Score=34.68 Aligned_cols=19 Identities=5% Similarity=0.149 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 004235 574 DGHTLKLKALEAQILELKK 592 (766)
Q Consensus 574 e~~~~kl~~Le~el~~Lk~ 592 (766)
.+++.+|.+++.+....+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~ 356 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQA 356 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444443
No 323
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=37.36 E-value=9.9 Score=35.06 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=13.3
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999865
No 324
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=37.34 E-value=8.9 Score=35.61 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.6
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|+.|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999875
No 325
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=37.24 E-value=19 Score=39.83 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=15.0
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+..|++|||||+|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SEEEEECCCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356677799999999998
No 326
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=37.11 E-value=11 Score=41.58 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.++..|+||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567799999999983
No 327
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=37.03 E-value=86 Score=26.31 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHH
Q 004235 541 EEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK----KKQESQVELLKQKHKSDEAAKRLQA 616 (766)
Q Consensus 541 e~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk----~k~~e~~~l~k~k~k~e~~i~~L~~ 616 (766)
+.++..++..+..|...+.... ..-..-.+.+...+..||.++.+++ ....+...|+-.|-+-|..|..++.
T Consensus 2 ~~eie~L~~q~~~Le~~l~e~E----~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 2 SCQLSQLQCQLAAKEAKLRDLE----DSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp ----------CTTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 328
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=37.02 E-value=12 Score=38.83 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.3
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+.||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57888999999999987
No 329
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=36.96 E-value=1e+02 Score=26.38 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHH
Q 004235 576 HTLKLKALEAQILELKKK----QESQVELLKQKHKSDEAAKR 613 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k----~~e~~~l~k~k~k~e~~i~~ 613 (766)
|...+..||.++..++.. ..+...|+-.|-+-+..|..
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555432 23334444444444444433
No 330
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=36.77 E-value=11 Score=41.41 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.0
Q ss_pred HhCCcCEEEEeecccCCCCcccc
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
++.|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345665 567899999999984
No 331
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=36.74 E-value=2e+02 Score=24.63 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIE 559 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~ 559 (766)
.+..+++.+++.++....++..++.
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~ 47 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQ 47 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444455555555444444444443
No 332
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=36.62 E-value=19 Score=38.72 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.0
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|.-..|+-+|+.|||||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 577777889999999999876
No 333
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=36.61 E-value=1.8e+02 Score=24.08 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHH
Q 004235 543 EKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK----KKQESQVELLKQKHKSDEAAKRLQA 616 (766)
Q Consensus 543 ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk----~k~~e~~~l~k~k~k~e~~i~~L~~ 616 (766)
++..+...+..|...+.... ..-..--..+..++..||.++..++ ....+...|+-.|-+-|..|..++.
T Consensus 2 el~~l~~~~~sLE~~l~e~e----~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREME----ENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 334
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=36.48 E-value=15 Score=39.18 Aligned_cols=29 Identities=34% Similarity=0.483 Sum_probs=22.5
Q ss_pred HhHHHHHhCC---cCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G---~N~tI~aYGqTGSGKTyTm 98 (766)
-|-+|.++.| ....+.-+|++|||||..+
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3567888864 3457888999999999876
No 335
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=36.16 E-value=11 Score=35.20 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.1
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-.|+.|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35777899999999875
No 336
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.10 E-value=77 Score=29.06 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=34.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 004235 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (766)
Q Consensus 603 ~k~k~e~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~ 669 (766)
.+...+....++..|+..|-++--.--.+|=.+. |......++.+.+|+.+..-.+.-+..|+.
T Consensus 61 ~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~a---r~~~~~~e~r~~~L~~ql~e~e~ll~~lq~ 124 (135)
T 2e7s_A 61 LRTKAEEEADKLNKEVEDLTASLFDEANNLVADA---RMEKYAIEILNKRLTEQLREKDMLLDTLTL 124 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHTTTHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666777776666555555554443 444455566666666666655555555443
No 337
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=35.98 E-value=9.1 Score=37.53 Aligned_cols=16 Identities=50% Similarity=0.686 Sum_probs=13.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.++-+|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3567899999999976
No 338
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=35.96 E-value=9.3 Score=44.45 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=16.6
Q ss_pred cCEEEEeecccCCCCcccc
Q 004235 80 YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (766)
.++.++..|..|||||+||
T Consensus 14 ~~~~~lV~AgaGSGKT~~l 32 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVI 32 (673)
T ss_dssp CSSEEEECCCTTSCHHHHH
T ss_pred CCCCEEEEeCCCCChHHHH
Confidence 3567888999999999998
No 339
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=35.88 E-value=15 Score=38.22 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=22.8
Q ss_pred HhHHHHHhC-Cc--CEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~-G~--N~tI~aYGqTGSGKTyTm 98 (766)
-|-+|.++. |+ ...++-||++|||||...
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 466788885 43 457889999999999875
No 340
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=35.68 E-value=12 Score=39.37 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.9
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-.|++|||||+|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46778899999999998
No 341
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=35.63 E-value=60 Score=22.27 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 532 HFGKKIMELEEEKRIVQQERDRLLA 556 (766)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~ 556 (766)
|.+.|+.+|-.++..|+.|..+|..
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567777777777777777766643
No 342
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.29 E-value=65 Score=26.28 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 004235 597 QVELLKQKHKSDEAAKRLQAEIQ 619 (766)
Q Consensus 597 ~~~l~k~k~k~e~~i~~L~~Ei~ 619 (766)
...+.+.-...+..|+.|+.++.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444443
No 343
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.23 E-value=1.2e+02 Score=21.64 Aligned_cols=44 Identities=27% Similarity=0.370 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004235 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQE 595 (766)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~Lk~k~~ 595 (766)
+.+|+.++..|+.|.+-|... +.. ...-+.-||++|+.|++|..
T Consensus 5 vaqlenevaslenenetlkkk----------nlh-----kkdliaylekeianlrkkie 48 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKK----------NLH-----KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHH-----HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccHHHHHh----------ccc-----HHHHHHHHHHHHHHHHHHhc
Confidence 456666666666666544321 001 11224458888888888754
No 344
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=35.15 E-value=10 Score=36.66 Aligned_cols=16 Identities=38% Similarity=0.312 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 345
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=35.11 E-value=11 Score=37.28 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=15.9
Q ss_pred CcCEEEEeecccCCCCcccc
Q 004235 79 GYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTyTm 98 (766)
-+...|+-.|+||||||...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHH
T ss_pred ECCEEEEEECCCCCCHHHHH
Confidence 34556888899999998765
No 346
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=35.09 E-value=2.4e+02 Score=24.96 Aligned_cols=86 Identities=21% Similarity=0.188 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 609 EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKAS---REKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEA 685 (766)
Q Consensus 609 ~~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~~k~~---~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK~eEa 685 (766)
.+.++|+.+...|+.+-.+++. .|.+.+.+ |..+ -.++|.-|...-...+..+..|+..+..=+.-.+..+-+.
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~-~r~~Le~~--w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMK-DKQELEDF--IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777665444332 33333333 4444 4578888888888888888888765555444444444444
Q ss_pred HHHHHHHHHHHH
Q 004235 686 AIATKRLKELLE 697 (766)
Q Consensus 686 ~a~~krlk~~l~ 697 (766)
+.-.+++..-|.
T Consensus 83 t~~Re~V~~eL~ 94 (112)
T 1x79_B 83 MQSREQVSEELV 94 (112)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHH
Confidence 444555444443
No 347
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=35.03 E-value=11 Score=35.45 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.6
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999864
No 348
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=35.02 E-value=9.3 Score=44.80 Aligned_cols=20 Identities=40% Similarity=0.416 Sum_probs=15.4
Q ss_pred hCCcCEEEEeecccCCCCcccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|.| ++..|+||||||...
T Consensus 37 ~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 37 LEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGTCE--EEEECCGGGCHHHHH
T ss_pred cCCCc--EEEEcCCccHHHHHH
Confidence 44544 678899999999765
No 349
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=35.00 E-value=11 Score=35.43 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.6
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999864
No 350
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=34.87 E-value=2.4e+02 Score=24.96 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004235 639 FRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRK 681 (766)
Q Consensus 639 ~r~~k~~~~kEi~qLkk~~rk~~~ei~~L~~~~~~q~~vLkrK 681 (766)
--+.+...++||+++++ |-...++.+++.+.+++.-+-..
T Consensus 59 klqLkse~e~E~ae~k~---KYD~~lqe~ese~~~kkK~le~~ 98 (115)
T 3vem_A 59 KSILKAELERKMAEVQA---EFRRKFHEVEAEHNTRTTKIEKD 98 (115)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456668899998884 44555777777777766555444
No 351
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=34.85 E-value=4.9e+02 Score=28.53 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLKALEAQILELKKKQESQVELLKQ 603 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e~~~l~k~ 603 (766)
|-.=..+||.+|..|+.+..++...++.
T Consensus 109 ~~e~S~eLe~ri~yIK~kVd~qi~~Irv 136 (491)
T 1m1j_A 109 YGHVSTELRRRIVTLKQRVATQVNRIKA 136 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445568888888888888887765554
No 352
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=34.84 E-value=1.1e+02 Score=22.82 Aligned_cols=43 Identities=33% Similarity=0.394 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHH
Q 004235 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQ 586 (766)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~e 586 (766)
.|+|+..|+.-++.||.--.+|+++..+. ..|| .+|+..||.+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ss-------q~Kl----KqRit~lE~~ 45 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNAT-------QMKM----KQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHHHHHhc
Confidence 46888999999999999889999888763 2344 4566666654
No 353
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=34.77 E-value=10 Score=44.45 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=25.5
Q ss_pred hCCcCEEEEeecccCCCCccccCCCCCCCCcccc--hHH--HHHHHHHHHHh
Q 004235 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGL--IPQ--VMNALFNKIET 124 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm~g~~~~~~~~Gi--ipr--~~~~LF~~i~~ 124 (766)
++|- .|+..|+||||||+.+.-.... ...|+ .|. ++.++|+.+..
T Consensus 153 l~rk--~vlv~apTGSGKT~~al~~l~~-~~~gl~l~PtR~LA~Qi~~~l~~ 201 (677)
T 3rc3_A 153 MQRK--IIFHSGPTNSGKTYHAIQKYFS-AKSGVYCGPLKLLAHEIFEKSNA 201 (677)
T ss_dssp SCCE--EEEEECCTTSSHHHHHHHHHHH-SSSEEEEESSHHHHHHHHHHHHH
T ss_pred cCCC--EEEEEcCCCCCHHHHHHHHHHh-cCCeEEEeCHHHHHHHHHHHHHh
Confidence 4453 5788999999999854110000 01233 232 46677777765
No 354
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=34.77 E-value=38 Score=34.64 Aligned_cols=27 Identities=7% Similarity=0.004 Sum_probs=19.5
Q ss_pred hHHHHHhCC---cCEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G---~N~tI~aYGqTGSGKTyTm 98 (766)
|-+|.++.| -+.+++..|.+||||| |+
T Consensus 8 ~~LD~~l~GGl~~gs~~li~g~p~~~~~-~l 37 (260)
T 3bs4_A 8 EELDREIGKIKKHSLILIHEEDASSRGK-DI 37 (260)
T ss_dssp HHHHHHHCCBCTTCEEEEEECSGGGCHH-HH
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCccHH-HH
Confidence 445777766 4566677788888888 77
No 355
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=34.59 E-value=9.8 Score=36.80 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=13.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|++|||||+.+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999855
No 356
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=34.57 E-value=11 Score=35.50 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.5
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999865
No 357
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=34.41 E-value=11 Score=38.68 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=19.7
Q ss_pred HHHHHhCCcC--EEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N--~tI~aYGqTGSGKTyTm 98 (766)
.++.+.-|+. ..+.-.|++|||||..+
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 4566665543 35677899999999987
No 358
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=34.41 E-value=19 Score=44.89 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=21.1
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYT 97 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyT 97 (766)
+..++.++-.|...-++..|+||||||.+
T Consensus 612 i~~il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 612 INAVLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 34444555557766778899999999975
No 359
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=34.38 E-value=14 Score=38.75 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=21.9
Q ss_pred hHHHHHhCC-c--CEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQG-Y--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G-~--N~tI~aYGqTGSGKTyTm 98 (766)
+-+|.++.| + ...+.-||++|||||..+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 567888853 3 346788999999999875
No 360
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=34.35 E-value=16 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=17.7
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTY 96 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTy 96 (766)
.+..++.|.| +++.|+||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4455677876 5778999999995
No 361
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=34.33 E-value=2.1e+02 Score=24.04 Aligned_cols=15 Identities=40% Similarity=0.377 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 004235 579 KLKALEAQILELKKK 593 (766)
Q Consensus 579 kl~~Le~el~~Lk~k 593 (766)
+-.+|+.+|.+|...
T Consensus 71 ~K~eLE~~l~el~~r 85 (89)
T 3bas_A 71 KNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 335667777666543
No 362
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=34.17 E-value=14 Score=35.23 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.2
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..-.|.-.|++|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344567888899999999864
No 363
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=33.98 E-value=12 Score=35.04 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.1
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..+.-.|+.|||||+.+
T Consensus 34 e~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667799999999987
No 364
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=33.76 E-value=15 Score=38.08 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=15.5
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+.||+.|+|||+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58899999999999987
No 365
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=33.71 E-value=3.3e+02 Score=26.16 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQ 586 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~e 586 (766)
..+..|-++|.....+.+.|.-++.+.. ...-+=+.|.-|+.+||+.
T Consensus 98 reiarllekiqkyfQ~IEtlK~ql~nf~-----e~RLiYDHYKlKvdELEK~ 144 (294)
T 3caz_A 98 REIARLLEKIQKYRQEIEEIKKEYKETD-----KYRERYDHYKVKLDNLEKK 144 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHhHHHHHhc
Confidence 3445555555555666666666665531 2223335566666666653
No 366
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=33.68 E-value=11 Score=35.76 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=13.6
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999864
No 367
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=33.46 E-value=88 Score=21.42 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 532 HFGKKIMELEEEKRIVQQERDRLLA 556 (766)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~ 556 (766)
+.+.|+.+|-.++..|+.|..+|..
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567777777777777777766654
No 368
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=33.38 E-value=11 Score=37.52 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.5
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46778899999999876
No 369
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=33.23 E-value=16 Score=39.65 Aligned_cols=17 Identities=35% Similarity=0.218 Sum_probs=14.5
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|.-+|++|||||+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46778999999999876
No 370
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=33.22 E-value=11 Score=44.18 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=16.1
Q ss_pred HhCCcCEEEEeecccCCCCcccc
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+++|.| ++..|+||||||...
T Consensus 37 i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 37 VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp HTTCSC--EEEECSSHHHHHHHH
T ss_pred HhCCCc--EEEEcCCccHHHHHH
Confidence 456666 467889999999875
No 371
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=33.06 E-value=12 Score=37.63 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.+.-.|++|||||+.|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456799999999886
No 372
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=33.01 E-value=14 Score=45.79 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=19.1
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.|..++.|.+ |+..|+||||||...
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlva 216 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVVA 216 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHHH
Confidence 4555677876 477899999999763
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=32.99 E-value=12 Score=34.73 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.3
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999864
No 374
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.83 E-value=1.3e+02 Score=23.71 Aligned_cols=38 Identities=37% Similarity=0.405 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004235 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKA 623 (766)
Q Consensus 576 ~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~ 623 (766)
...+..+|+.++.+|..... .-..+|..|..|+..||.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~----------~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNE----------ALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 34445666666666655443 334556677777777764
No 375
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=32.52 E-value=11 Score=43.16 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=14.5
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
.-++..|.||||||+++
T Consensus 215 pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeeEEECCCCCCHHHHH
Confidence 44688899999999986
No 376
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=32.52 E-value=19 Score=37.79 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=20.1
Q ss_pred hHHHHHhCCc-CEEEEeecccCCCCcccc
Q 004235 71 PLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 71 plV~~~l~G~-N~tI~aYGqTGSGKTyTm 98 (766)
.+...+-.|. ...++-||+.|+|||.+.
T Consensus 13 ~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 13 KLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 3444444553 446888999999999875
No 377
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=32.42 E-value=15 Score=38.95 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.6
Q ss_pred EEEEeecccCCCCccc
Q 004235 82 ATVLAYGQTGSGKTYT 97 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyT 97 (766)
-.|+-.|+||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4688899999999974
No 378
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=32.34 E-value=30 Score=35.98 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=13.7
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|...|.+|+|||+++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999987
No 379
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=32.10 E-value=12 Score=35.96 Aligned_cols=16 Identities=44% Similarity=0.611 Sum_probs=13.3
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|+.|||||+.+
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999875
No 380
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=32.10 E-value=12 Score=35.13 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.4
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999754
No 381
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=32.00 E-value=25 Score=38.86 Aligned_cols=18 Identities=44% Similarity=0.577 Sum_probs=15.9
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+..|++|||||+|.
T Consensus 100 p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 467888899999999998
No 382
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=31.96 E-value=17 Score=38.88 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=22.4
Q ss_pred hHhHHHHHhC--Cc--CEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQ--GY--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~--G~--N~tI~aYGqTGSGKTyTm 98 (766)
.-+-+|.++. |+ ...+.-||++|||||+.+
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 3455677787 43 346888999999999875
No 383
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=31.92 E-value=17 Score=43.10 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=12.9
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.++..|+||||||..+
T Consensus 111 ~vii~gpTGSGKTtll 126 (773)
T 2xau_A 111 IMVFVGETGSGKTTQI 126 (773)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567799999999944
No 384
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=31.84 E-value=12 Score=42.43 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.1
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
...|+-||++|+|||+++
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346888999999999876
No 385
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=31.80 E-value=12 Score=37.02 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.+.-.|++|||||+.+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999877
No 386
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=31.79 E-value=13 Score=35.18 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999854
No 387
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=31.78 E-value=15 Score=34.38 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=9.8
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 7 ~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 7 IIWINGPFGVGKTHTA 22 (183)
T ss_dssp EEEEECCC----CHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999864
No 388
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.66 E-value=2.4e+02 Score=23.92 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Q 004235 534 GKKIMELEEEKRIVQQERDR---LLAEIENL 561 (766)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~---Ll~~l~~~ 561 (766)
..++..+..++..++.+..+ ++.+|..+
T Consensus 14 q~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l 44 (107)
T 1fxk_A 14 QQQAQAISVQKQTVEMQINETQKALEELSRA 44 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555566666666555544 44445443
No 389
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=31.54 E-value=11 Score=40.27 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.5
Q ss_pred HhCCcCEEEEeecccCCCCcccc
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..|++..|...|.+|+|||..+
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHHH
T ss_pred ecCCCCEEEEEEcCCCCCHHHHH
Confidence 56799999999999999999766
No 390
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=31.51 E-value=14 Score=36.15 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=13.9
Q ss_pred CcCEEEEeecccCCCCcc
Q 004235 79 GYNATVLAYGQTGSGKTY 96 (766)
Q Consensus 79 G~N~tI~aYGqTGSGKTy 96 (766)
..--..|-||+.|||||.
T Consensus 18 ~~g~l~fiyG~MgsGKTt 35 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKST 35 (195)
T ss_dssp -CCEEEEEEECTTSCHHH
T ss_pred CceEEEEEECCCCCcHHH
Confidence 334478999999999993
No 391
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=31.45 E-value=16 Score=42.75 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=15.5
Q ss_pred hCCcCEEEEeecccCCCCcccc
Q 004235 77 FQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 77 l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..|.| ++..|+||||||...
T Consensus 44 ~~~~~--~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 44 LEGNR--LLLTSPTGSGKTLIA 63 (715)
T ss_dssp TTTCC--EEEECCTTSCHHHHH
T ss_pred cCCCc--EEEEcCCCCcHHHHH
Confidence 44544 577899999999875
No 392
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=31.42 E-value=14 Score=45.23 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHH
Q 004235 721 NEKSLQKWLEHELEVSANVHEVRF-----KYEKQSQ 751 (766)
Q Consensus 721 ~~~~~~~wv~~Ele~~~~~~e~~~-----~~e~~~~ 751 (766)
.+..|.+|+.+=.|++-.+..|-. .|+.-++
T Consensus 957 ~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~~ 992 (1010)
T 2xgj_A 957 YEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKME 992 (1010)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 357899999999999888888754 5665554
No 393
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=31.21 E-value=13 Score=34.97 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=12.8
Q ss_pred EEEeecccCCCCccc
Q 004235 83 TVLAYGQTGSGKTYT 97 (766)
Q Consensus 83 tI~aYGqTGSGKTyT 97 (766)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 377789999999986
No 394
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=31.17 E-value=12 Score=36.37 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=14.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.++-||+.|||||..+
T Consensus 10 i~v~~G~mgsGKTT~l 25 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEEL 25 (191)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5678999999999877
No 395
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.00 E-value=1e+02 Score=21.23 Aligned_cols=25 Identities=12% Similarity=0.164 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 532 HFGKKIMELEEEKRIVQQERDRLLA 556 (766)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~ 556 (766)
+.+.|+.+|-.++..|+.|..+|..
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4466677777777777777666543
No 396
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=30.63 E-value=15 Score=35.75 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
..+-||++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4456799999999876
No 397
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=30.63 E-value=18 Score=42.13 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=13.6
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.++..|+||||||+.+
T Consensus 234 ~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKV 249 (666)
T ss_dssp EEEEECCTTSCTTTHH
T ss_pred eEEEEeCCchhHHHHH
Confidence 4678899999999876
No 398
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.54 E-value=2.2e+02 Score=23.17 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEI 558 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l 558 (766)
.+|..|+..+...+.+++.+..++
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~El 44 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433333
No 399
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=30.51 E-value=13 Score=34.64 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.1
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|+.|||||+.-
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3677899999999864
No 400
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=30.41 E-value=70 Score=29.77 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHH
Q 004235 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKL 580 (766)
Q Consensus 501 ~~EL~eLnk~Le~KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl 580 (766)
+....+..++|.+.+..+.. .+.+....+..+..|+.+.+-+-.+|.++.... ++...-.+.|+.++
T Consensus 72 drKyeE~~RKl~~~E~dLer------------aeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~e-ekas~rE~~yee~I 138 (147)
T 2b9c_A 72 DRKYEEVARKLVIIESDLER------------AEERAELSEGKCAELEEELKTVTNNLKSLEDKV-EELLSKNYHLENEV 138 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH-HHHHHHHHHHHHHH
Confidence 34445555666655554432 346667777777777777777888887765433 34444455666666
Q ss_pred HHHHH
Q 004235 581 KALEA 585 (766)
Q Consensus 581 ~~Le~ 585 (766)
..|..
T Consensus 139 ~~L~~ 143 (147)
T 2b9c_A 139 ARLKK 143 (147)
T ss_dssp TTSCC
T ss_pred HHHHH
Confidence 55543
No 401
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=30.40 E-value=15 Score=33.90 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=13.3
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999864
No 402
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.39 E-value=2e+02 Score=23.94 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 379 SDMQKLRQQLKYLQAELCARAG-GAPSDEVQVLKGRIAWLEATNEDLCQELHEYR 432 (766)
Q Consensus 379 ~~i~~L~~~i~~l~~el~~~~~-~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~ 432 (766)
..|..|..+|..|+.+|....- ..+.+.++.+..++..++.+++.+..+..++.
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666643221 13456777788888888877777766655543
No 403
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=30.29 E-value=13 Score=42.11 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=13.7
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
-++..|.||||||+.+
T Consensus 169 HlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 169 HLLVAGTTGSGASVGV 184 (512)
T ss_dssp SEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4577899999999976
No 404
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=30.17 E-value=24 Score=41.41 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.8
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.|-||+.-|-+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999986
No 405
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=30.11 E-value=20 Score=37.39 Aligned_cols=30 Identities=13% Similarity=0.010 Sum_probs=22.4
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+...+-.|-.-.++-||+.|+|||.+.
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 445555555676667888999999998876
No 406
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=30.11 E-value=14 Score=36.22 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4555799999999866
No 407
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=30.10 E-value=17 Score=44.76 Aligned_cols=14 Identities=50% Similarity=0.634 Sum_probs=12.0
Q ss_pred EeecccCCCCcccc
Q 004235 85 LAYGQTGSGKTYTM 98 (766)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (766)
+...+||||||+||
T Consensus 304 li~~~TGSGKT~t~ 317 (1038)
T 2w00_A 304 YIWHTTGSGKTLTS 317 (1038)
T ss_dssp EEEECTTSSHHHHH
T ss_pred EEEecCCCCHHHHH
Confidence 45668999999998
No 408
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=30.07 E-value=1.6e+02 Score=25.07 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=7.9
Q ss_pred HHhhhHHHHHHHHHHHH
Q 004235 603 QKHKSDEAAKRLQAEIQ 619 (766)
Q Consensus 603 ~k~k~e~~i~~L~~Ei~ 619 (766)
+|++.|+.|.+|+.||.
T Consensus 69 mKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 69 MKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 409
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=29.98 E-value=14 Score=35.27 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=12.8
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|.+|||||+.+
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556699999999876
No 410
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=29.98 E-value=14 Score=36.34 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.7
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|.+|||||+..
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999864
No 411
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=29.96 E-value=14 Score=35.46 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.7
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 20 ~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVG 35 (202)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999865
No 412
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.96 E-value=2.3e+02 Score=24.63 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (766)
Q Consensus 610 ~i~~L~~Ei~~mK~~kV~L~kkmkee~~~~r~ 641 (766)
.++.|+.||...-.|-|--.+|+++..+.|..
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~ 67 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEV 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46777888888888877777777777666654
No 413
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=29.85 E-value=16 Score=38.48 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=13.6
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
-.|+..|+||||||..-
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 35777899999999754
No 414
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=29.78 E-value=16 Score=39.06 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|+||||||..-
T Consensus 42 lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6888899999999743
No 415
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=29.74 E-value=29 Score=36.09 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.1
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
-.|.-.|++|||||+++
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45666799999999987
No 416
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=29.68 E-value=15 Score=34.40 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999864
No 417
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=29.66 E-value=19 Score=38.62 Aligned_cols=30 Identities=33% Similarity=0.356 Sum_probs=22.9
Q ss_pred hHhHHHHHhC--Cc--CEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQ--GY--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~--G~--N~tI~aYGqTGSGKTyTm 98 (766)
.-+-+|.++. |+ ...+.-||++|||||+.+
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHH
Confidence 3466788886 44 457888999999999876
No 418
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=29.58 E-value=15 Score=35.05 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=14.0
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
-.|+-.|..|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35778899999999854
No 419
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=29.51 E-value=14 Score=36.70 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=12.7
Q ss_pred EEEeecccCCCCccc
Q 004235 83 TVLAYGQTGSGKTYT 97 (766)
Q Consensus 83 tI~aYGqTGSGKTyT 97 (766)
.||-.|++||||++-
T Consensus 31 iI~llGpPGsGKgTq 45 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQ 45 (217)
T ss_dssp EEEEECCTTCCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999764
No 420
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=29.50 E-value=15 Score=34.63 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQC 26 (196)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999864
No 421
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=29.48 E-value=14 Score=36.21 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.9
Q ss_pred EEeecccCCCCccc
Q 004235 84 VLAYGQTGSGKTYT 97 (766)
Q Consensus 84 I~aYGqTGSGKTyT 97 (766)
|+-.|++||||++-
T Consensus 3 Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999863
No 422
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=29.37 E-value=15 Score=37.05 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.3
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+..|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 46888999999999864
No 423
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=29.01 E-value=21 Score=37.45 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=14.4
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
.-.|.-.|++|||||+++
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 345666799999999987
No 424
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=28.98 E-value=15 Score=35.83 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQA 21 (220)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999754
No 425
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=28.83 E-value=18 Score=34.10 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=14.5
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
+..|+-.|..|||||+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345777899999999865
No 426
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=28.79 E-value=16 Score=40.01 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.0
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
+.|.-.|++|||||++|
T Consensus 70 ~~valvG~nGaGKSTLl 86 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFI 86 (413)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35556799999999997
No 427
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=28.74 E-value=15 Score=34.41 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=15.9
Q ss_pred cCEEEEeecccCCCCcccc
Q 004235 80 YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (766)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4457899999999999766
No 428
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=28.67 E-value=17 Score=39.04 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=12.1
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
++-+|++|||||.-+
T Consensus 26 ~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345899999999765
No 429
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=28.65 E-value=16 Score=35.90 Aligned_cols=26 Identities=46% Similarity=0.691 Sum_probs=18.4
Q ss_pred HHHHhC-Cc--CEEEEeecccCCCCcccc
Q 004235 73 VDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~-G~--N~tI~aYGqTGSGKTyTm 98 (766)
+|.++. |+ ...++-+|.+|+|||...
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 455564 43 346778899999999754
No 430
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.64 E-value=15 Score=35.48 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.6
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+-.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999864
No 431
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.57 E-value=2.5e+02 Score=23.20 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=17.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004235 603 QKHKSDEAAKRLQAEIQSIKAQKVQL 628 (766)
Q Consensus 603 ~k~k~e~~i~~L~~Ei~~mK~~kV~L 628 (766)
++.+..+.+...++||+.|+++.-.|
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL 37 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44445566777788888887766443
No 432
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=28.56 E-value=14 Score=33.12 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.7
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999875
No 433
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=28.54 E-value=16 Score=35.33 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=12.2
Q ss_pred EEeecccCCCCccc
Q 004235 84 VLAYGQTGSGKTYT 97 (766)
Q Consensus 84 I~aYGqTGSGKTyT 97 (766)
|+.+|.+|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 68899999999864
No 434
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=28.47 E-value=26 Score=41.47 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.8
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.|-||+..|-+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 599999999999999999986
No 435
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=28.36 E-value=22 Score=44.08 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=19.3
Q ss_pred HHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+..++.|.| +++.++||||||...
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~~ 110 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTFG 110 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHHH
Confidence 4566778876 578899999999843
No 436
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=28.36 E-value=19 Score=38.33 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.3
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..++-||++|+|||+..
T Consensus 124 sviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp EEEEEECSCSSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35678999999999876
No 437
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=28.35 E-value=15 Score=35.19 Aligned_cols=16 Identities=44% Similarity=0.380 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|+.|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999875
No 438
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=28.31 E-value=15 Score=38.66 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.9
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
+|.-.|++|+|||+|+
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999998
No 439
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=28.18 E-value=16 Score=38.40 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.2
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
-+|.-+|++|||||+.+
T Consensus 127 e~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 35667899999999877
No 440
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=27.95 E-value=21 Score=41.04 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=20.0
Q ss_pred HhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 70 ~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
..+-..+-.|. .|+-+|++|+|||+++
T Consensus 51 ~~l~~~i~~g~--~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 51 EVIKTAANQKR--HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHHHTTC--CEEEECCTTSSHHHHH
T ss_pred hhccccccCCC--EEEEEeCCCCCHHHHH
Confidence 44444555674 6677999999999986
No 441
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=27.85 E-value=22 Score=40.20 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=19.3
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+...+..|.++ ++-.+||||||.+.
T Consensus 12 ~~~v~~~l~~~~~~--~~~a~TGtGKT~~~ 39 (551)
T 3crv_A 12 KDKVIEGLRNNFLV--ALNAPTGSGKTLFS 39 (551)
T ss_dssp HHHHHHHHHTTCEE--EEECCTTSSHHHHH
T ss_pred HHHHHHHHHcCCcE--EEECCCCccHHHHH
Confidence 34455566678654 55568999998875
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=27.73 E-value=19 Score=38.12 Aligned_cols=16 Identities=44% Similarity=0.391 Sum_probs=13.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+..|+||||||..-
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4667899999999754
No 443
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=27.70 E-value=27 Score=41.46 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.7
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.|-||+.-|-+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 599999999999999999986
No 444
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=27.68 E-value=19 Score=34.50 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.2
Q ss_pred cCEEEEeecccCCCCcccc
Q 004235 80 YNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 80 ~N~tI~aYGqTGSGKTyTm 98 (766)
....|+-.|..|||||+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3446888899999999864
No 445
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.45 E-value=1.5e+02 Score=20.74 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 532 HFGKKIMELEEEKRIVQQERDRLLAEI 558 (766)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~~l 558 (766)
|.+.|+.+|-.+...|+.|..+|..-+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 345666666666666666665555443
No 446
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.43 E-value=1.3e+02 Score=20.62 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 532 HFGKKIMELEEEKRIVQQERDRLL 555 (766)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll 555 (766)
|.+.|+.+|-.++..|+.|..+|.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 446667777777777776666554
No 447
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=27.42 E-value=27 Score=42.76 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.5
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.|-||+..|-+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 599999999999999999874
No 448
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=27.20 E-value=16 Score=36.18 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=12.4
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
+.-.|+.|||||+.+
T Consensus 33 ~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 33 VSIIGASGSGKSTLL 47 (224)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999876
No 449
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=27.09 E-value=17 Score=35.21 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=12.6
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|+-.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999864
No 450
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=26.86 E-value=15 Score=43.20 Aligned_cols=18 Identities=33% Similarity=0.528 Sum_probs=15.5
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
++.++..|..|||||+||
T Consensus 24 ~g~~lV~AgAGSGKT~vL 41 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVL 41 (724)
T ss_dssp SSCEEEEECTTSCHHHHH
T ss_pred CCCEEEEEcCCCCHHHHH
Confidence 456778899999999998
No 451
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=26.86 E-value=17 Score=35.89 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.1
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-.|..|||||+..
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999864
No 452
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.83 E-value=1.6e+02 Score=32.71 Aligned_cols=7 Identities=14% Similarity=-0.016 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 004235 725 LQKWLEH 731 (766)
Q Consensus 725 ~~~wv~~ 731 (766)
|.+|+.+
T Consensus 191 L~~~~~d 197 (485)
T 3qne_A 191 LINYGLS 197 (485)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 453
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=26.81 E-value=17 Score=34.79 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|..|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3677899999999864
No 454
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=26.55 E-value=29 Score=42.39 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.4
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.|-||+.-|-+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 599999999999999999874
No 455
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=26.50 E-value=21 Score=41.23 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=18.8
Q ss_pred HHHHhCCcCEEEEeecccCCCCcccc
Q 004235 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 73 V~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..++.|.|. +..++||||||...
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTTH
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 5566777764 67899999999984
No 456
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=26.44 E-value=17 Score=32.73 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.5
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999766
No 457
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=26.42 E-value=25 Score=39.71 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=19.1
Q ss_pred hHhHHHHHhCCcCEEEEeecccCCCCcccc
Q 004235 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 69 v~plV~~~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+..+...+..|.++ ++-.+||||||.+.
T Consensus 16 ~~~v~~~~~~~~~~--~~~a~TGtGKT~~~ 43 (540)
T 2vl7_A 16 LGEAINALKHGKTL--LLNAKPGLGKTVFV 43 (540)
T ss_dssp HHHHHHHHHTTCEE--EEECCTTSCHHHHH
T ss_pred HHHHHHHHHcCCCE--EEEcCCCCcHHHHH
Confidence 34445556678654 55568999999865
No 458
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=26.41 E-value=18 Score=36.30 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.3
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.+.-.|++|||||+.+
T Consensus 33 ~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999986
No 459
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=26.41 E-value=21 Score=39.38 Aligned_cols=16 Identities=50% Similarity=0.636 Sum_probs=14.4
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+..|++|+|||+|.
T Consensus 101 vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTA 116 (432)
T ss_dssp CEEEECCSSSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6778899999999998
No 460
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=26.39 E-value=18 Score=36.46 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.+.-.|+.|||||+.+
T Consensus 26 ~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999987
No 461
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=26.31 E-value=18 Score=37.33 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=12.6
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
+.-.|++|||||+.+
T Consensus 37 ~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 37 TAILGGNGVGKSTLF 51 (275)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999987
No 462
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=26.29 E-value=19 Score=34.96 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.6
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|++|||||+..
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999875
No 463
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=26.21 E-value=18 Score=34.31 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=12.6
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|.-.|..|||||+..
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 667899999999855
No 464
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=26.09 E-value=20 Score=33.18 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+.-
T Consensus 9 ~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLA 24 (168)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5777899999999853
No 465
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.09 E-value=2.7e+02 Score=22.82 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhhHHHHHHHHHHHHHH
Q 004235 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILE 589 (766)
Q Consensus 528 ~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~kl~e~~~~kl~~Le~el~~ 589 (766)
..|...=.++.+|-.+...++.|...+.+.. ...+.|+.+||.++..
T Consensus 30 vvk~DLI~rvdELt~E~e~l~~El~s~~~~~---------------~r~~~ri~elEeElkr 76 (77)
T 2w83_C 30 IVKNDLIAKVDELTCEKDVLQGELEAVKQAK---------------LKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHC---------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhc
Confidence 3444444667777777777766665544332 2346677788877654
No 466
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=26.01 E-value=18 Score=36.86 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=13.9
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.+.-+|++|||||+.+
T Consensus 32 i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLA 47 (279)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5677899999999876
No 467
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=25.88 E-value=18 Score=33.92 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=12.4
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|.-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999754
No 468
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=25.85 E-value=17 Score=41.73 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=14.4
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-||++|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 5888999999999876
No 469
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.80 E-value=2.8e+02 Score=22.92 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 535 KKIMELEEEKRIVQQERDRLLAEI 558 (766)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l 558 (766)
.+|..|+..+...+.+++.+..++
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 470
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=25.80 E-value=31 Score=41.04 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.5
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.|-||+.-|-+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 589999999999999999885
No 471
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=25.75 E-value=3.3e+02 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=9.2
Q ss_pred HHHHHHhhhhhHHHHHHHH
Q 004235 650 LLKLKKEGRKNEFERHKLE 668 (766)
Q Consensus 650 i~qLkk~~rk~~~ei~~L~ 668 (766)
|..|+.+--.+..++..++
T Consensus 56 le~lk~eL~~~~~el~~lq 74 (107)
T 2no2_A 56 LESLKQELATSQRELQVLQ 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445544444555555544
No 472
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=25.75 E-value=18 Score=35.25 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.4
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|..|||||+..
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999864
No 473
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=25.74 E-value=22 Score=33.85 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.1
Q ss_pred EEEEeecccCCCCcccc
Q 004235 82 ATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 82 ~tI~aYGqTGSGKTyTm 98 (766)
..|+-.|..|||||+..
T Consensus 5 ~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 35778899999999865
No 474
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=25.68 E-value=28 Score=41.64 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.6
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.|-||+.-|-+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 589999999999999999885
No 475
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=25.66 E-value=18 Score=36.60 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=12.7
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
+.-.|+.|||||+.+
T Consensus 36 ~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLI 50 (257)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999987
No 476
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=25.59 E-value=21 Score=35.86 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.3
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.+.-.|++|||||+.+
T Consensus 30 ~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999987
No 477
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.55 E-value=2.2e+02 Score=22.01 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 004235 569 TQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (766)
Q Consensus 569 ~~kl~e~~~~kl~~Le~el~~Lk~k~~e~~~l~k~k~k~e~~i~~L~~Ei~~mK~~ 624 (766)
+.+.++.......+|+.++..|..... .-...|..|+.|+..||..
T Consensus 13 A~k~R~rKk~~~~~Le~~~~~L~~~n~----------~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 13 ASRSRQKRKVWVQSLEKKAEDLSSLNG----------QLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
No 478
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.50 E-value=19 Score=36.15 Aligned_cols=15 Identities=47% Similarity=0.678 Sum_probs=12.7
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
+.-.|+.|||||+.+
T Consensus 35 ~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 35 VTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456699999999987
No 479
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=25.42 E-value=29 Score=32.95 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=19.6
Q ss_pred HHHHH-hCCcCEEEEeecccCCCCcccc
Q 004235 72 LVDGL-FQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 72 lV~~~-l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+++.+ +.-....|...|.+|+|||..+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHH
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHH
Confidence 44444 3444567888999999999877
No 480
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=25.37 E-value=2.1e+02 Score=23.28 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHH
Q 004235 574 DGHTLKLKALEAQILELKKK----QESQVELLKQKHKSDEAAKRL 614 (766)
Q Consensus 574 e~~~~kl~~Le~el~~Lk~k----~~e~~~l~k~k~k~e~~i~~L 614 (766)
+.|...+..||.++.+++.. ..+...|+-.|-+-|..|..+
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666533 334455555555555555443
No 481
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=25.36 E-value=3.8e+02 Score=27.56 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHhhhchHHHHHHHHHHHHH---------------HHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 492 EHALWQNTMDKELNELNKRLEQ---------------KESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLA 556 (766)
Q Consensus 492 e~~~~q~~l~~EL~eLnk~Le~---------------KE~e~k~~~~~~~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~ 556 (766)
|.+.+..++.+.|..|-++-.- .++++..+.-.....+..-+..=+.+++.....=+.-.+.|..
T Consensus 68 ERa~IEe~YakqLrkLakk~~~l~k~~~~~~~~~~vlt~ee~~~~~~~e~G~l~~~W~~v~~e~e~~a~~H~~la~~L~~ 147 (287)
T 3g9g_A 68 ELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLGELRNVWDTVIEELKSDLKSSTEYYNTLDQ 147 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTSSCHHHHHHCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccccchhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666777777777765320 1233333332233334445555556665555544444444443
Q ss_pred HH
Q 004235 557 EI 558 (766)
Q Consensus 557 ~l 558 (766)
++
T Consensus 148 ev 149 (287)
T 3g9g_A 148 QV 149 (287)
T ss_dssp HT
T ss_pred HH
Confidence 33
No 482
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=25.36 E-value=27 Score=32.31 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.7
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLI 18 (190)
T ss_dssp EEEEEEBTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999876
No 483
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=25.33 E-value=32 Score=40.82 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.8
Q ss_pred CCcCEEEEeecccCCCCcccc
Q 004235 78 QGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 78 ~G~N~tI~aYGqTGSGKTyTm 98 (766)
.+.|-||+.-|-+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 699999999999999999986
No 484
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=25.30 E-value=19 Score=34.65 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|++|||||+..
T Consensus 23 ~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999865
No 485
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.19 E-value=1.3e+02 Score=25.98 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 529 LRHHFGKKIMELEEEKRIVQQERDR 553 (766)
Q Consensus 529 ~k~~ye~kl~eLe~ei~~lq~Erd~ 553 (766)
.|..|..||.....++..++.|..+
T Consensus 68 ~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 68 SRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666665555555555444
No 486
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=25.16 E-value=18 Score=35.78 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=12.1
Q ss_pred EeecccCCCCcccc
Q 004235 85 LAYGQTGSGKTYTM 98 (766)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (766)
.-.|+.|||||+.|
T Consensus 39 ~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 39 NFHGPNGIGKTTLL 52 (214)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 45799999999987
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=25.15 E-value=20 Score=38.20 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|+-.|+||||||..-
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5778899999999743
No 488
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=25.14 E-value=19 Score=34.33 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=12.8
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|.+|||||..+
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3455699999999877
No 489
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=25.13 E-value=19 Score=36.65 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=12.5
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
+.-.|+.|||||+.+
T Consensus 35 ~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFL 49 (262)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999987
No 490
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=25.09 E-value=24 Score=44.31 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.8
Q ss_pred CEEEEeecccCCCCcccc
Q 004235 81 NATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 81 N~tI~aYGqTGSGKTyTm 98 (766)
+..++..|..|||||++|
T Consensus 23 ~~~~~v~a~AGSGKT~vl 40 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVL 40 (1232)
T ss_dssp SSCEEEEECTTCCHHHHH
T ss_pred CCCEEEEecCCCcHHHHH
Confidence 557788899999999998
No 491
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=25.07 E-value=35 Score=31.72 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=19.7
Q ss_pred HhCCcCEEEEeecccCCCCcccc
Q 004235 76 LFQGYNATVLAYGQTGSGKTYTM 98 (766)
Q Consensus 76 ~l~G~N~tI~aYGqTGSGKTyTm 98 (766)
+|......|+..|.+|+|||..+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 56677788999999999999866
No 492
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.06 E-value=2.5e+02 Score=27.59 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004235 538 MELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
..|..+...++.+.+++..+++.
T Consensus 142 ~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 142 EHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 493
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.95 E-value=3.3e+02 Score=23.38 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004235 526 TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (766)
Q Consensus 526 ~~~~k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (766)
++.-+.....||.+|+.+|......|+-|..=...
T Consensus 13 peqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~v 47 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQKEVDQREALKKMKDV 47 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667788888888888888888776654444
No 494
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=24.92 E-value=22 Score=33.25 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=13.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.|.-.|..|||||+..
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999865
No 495
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=24.84 E-value=20 Score=36.23 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.7
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
+.-.|++|||||+.+
T Consensus 38 ~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 496
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=24.80 E-value=20 Score=36.53 Aligned_cols=16 Identities=44% Similarity=0.547 Sum_probs=13.4
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.+.-.|++|||||+.+
T Consensus 48 ~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999987
No 497
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.73 E-value=20 Score=36.62 Aligned_cols=16 Identities=44% Similarity=0.682 Sum_probs=13.1
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
.+.-.|+.|||||+.+
T Consensus 35 ~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456699999999987
No 498
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=24.70 E-value=12 Score=35.80 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=0.0
Q ss_pred EEEeecccCCCCcccc
Q 004235 83 TVLAYGQTGSGKTYTM 98 (766)
Q Consensus 83 tI~aYGqTGSGKTyTm 98 (766)
+|.-.|.+|||||+.+
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
No 499
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=24.70 E-value=19 Score=34.92 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=0.0
Q ss_pred EEeecccCCCCcccc
Q 004235 84 VLAYGQTGSGKTYTM 98 (766)
Q Consensus 84 I~aYGqTGSGKTyTm 98 (766)
|.-.||+|||||..+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 500
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=24.66 E-value=24 Score=37.75 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=0.0
Q ss_pred CEEEEeecccCCCCc
Q 004235 81 NATVLAYGQTGSGKT 95 (766)
Q Consensus 81 N~tI~aYGqTGSGKT 95 (766)
.+..+-+|+||||||
T Consensus 25 ~gl~vi~G~NGaGKT 39 (371)
T 3auy_A 25 KGIVAIIGENGSGKS 39 (371)
T ss_dssp SEEEEEEECTTSSHH
T ss_pred CCeEEEECCCCCCHH
Done!