Query 004236
Match_columns 766
No_of_seqs 247 out of 1593
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 19:55:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 3E-175 7E-180 1400.9 36.2 640 78-725 70-750 (785)
2 KOG0019 Molecular chaperone (H 100.0 1E-170 3E-175 1404.3 46.8 595 78-724 32-650 (656)
3 PTZ00272 heat shock protein 83 100.0 2E-167 4E-172 1449.2 63.7 634 81-725 3-674 (701)
4 PTZ00130 heat shock protein 90 100.0 1E-165 3E-170 1433.0 61.4 637 78-724 63-761 (814)
5 COG0326 HtpG Molecular chapero 100.0 2E-161 5E-166 1356.9 54.3 593 79-717 3-622 (623)
6 PRK05218 heat shock protein 90 100.0 4E-140 8E-145 1218.5 57.9 585 80-718 3-613 (613)
7 PF00183 HSP90: Hsp90 protein; 100.0 2E-133 4E-138 1142.3 44.5 478 241-724 1-500 (531)
8 PRK14083 HSP90 family protein; 100.0 2E-129 5E-134 1120.3 55.0 552 82-721 2-597 (601)
9 PF13589 HATPase_c_3: Histidin 99.4 3.1E-13 6.6E-18 129.8 5.5 87 101-216 1-89 (137)
10 COG1389 DNA topoisomerase VI, 99.0 1.5E-09 3.4E-14 119.9 8.9 90 101-213 30-124 (538)
11 TIGR00585 mutl DNA mismatch re 98.7 3.1E-08 6.8E-13 107.8 9.9 145 93-266 11-192 (312)
12 PRK04184 DNA topoisomerase VI 98.6 1.4E-07 3.1E-12 108.8 9.8 127 105-257 38-201 (535)
13 PF02518 HATPase_c: Histidine 98.5 1.5E-07 3.3E-12 85.8 4.9 102 106-236 8-110 (111)
14 TIGR01052 top6b DNA topoisomer 98.3 1.7E-06 3.8E-11 99.0 10.5 127 106-257 31-192 (488)
15 PRK00095 mutL DNA mismatch rep 98.3 7.4E-06 1.6E-10 97.2 14.1 138 93-258 11-180 (617)
16 PRK14868 DNA topoisomerase VI 98.2 5.1E-06 1.1E-10 98.5 9.3 125 106-257 49-207 (795)
17 PRK14867 DNA topoisomerase VI 97.7 9.6E-05 2.1E-09 87.4 8.2 126 106-257 39-198 (659)
18 PRK05559 DNA topoisomerase IV 97.5 9.6E-05 2.1E-09 87.9 6.2 128 105-257 39-199 (631)
19 smart00387 HATPase_c Histidine 97.3 0.00036 7.7E-09 61.0 5.7 101 106-235 8-109 (111)
20 COG0323 MutL DNA mismatch repa 97.3 0.00037 8E-09 83.1 7.1 135 101-265 21-192 (638)
21 cd00075 HATPase_c Histidine ki 97.0 0.0016 3.6E-08 55.8 6.1 97 106-234 3-103 (103)
22 PRK10755 sensor protein BasS/P 97.0 0.00071 1.5E-08 73.9 4.7 100 106-237 250-351 (356)
23 TIGR02916 PEP_his_kin putative 97.0 0.00082 1.8E-08 80.7 5.4 95 107-234 583-678 (679)
24 smart00433 TOP2c Topoisomerase 97.0 0.0005 1.1E-08 81.5 3.4 134 107-267 5-174 (594)
25 PRK10549 signal transduction h 96.9 0.0011 2.3E-08 74.8 5.6 102 107-236 356-458 (466)
26 TIGR01055 parE_Gneg DNA topois 96.9 0.0012 2.6E-08 78.6 6.2 137 105-267 32-203 (625)
27 KOG0019 Molecular chaperone (H 96.9 4E-05 8.6E-10 88.0 -6.2 227 453-691 375-604 (656)
28 PRK14939 gyrB DNA gyrase subun 96.8 0.0018 3.9E-08 78.3 6.9 132 106-267 40-208 (756)
29 PRK10604 sensor protein RstB; 96.8 0.0015 3.3E-08 74.0 5.3 100 107-236 323-423 (433)
30 PRK11006 phoR phosphate regulo 96.7 0.002 4.4E-08 72.6 5.5 103 106-236 320-423 (430)
31 PRK09470 cpxA two-component se 96.7 0.0023 4.9E-08 71.9 5.8 99 107-235 357-456 (461)
32 TIGR02938 nifL_nitrog nitrogen 96.6 0.0026 5.7E-08 71.2 5.9 103 105-234 389-492 (494)
33 TIGR01059 gyrB DNA gyrase, B s 96.5 0.0028 6E-08 76.1 5.3 135 106-267 33-201 (654)
34 PRK11100 sensory histidine kin 96.5 0.0041 8.9E-08 69.8 6.2 101 106-235 371-472 (475)
35 TIGR02966 phoR_proteo phosphat 96.4 0.0033 7.1E-08 66.6 4.8 100 107-234 233-333 (333)
36 PRK11086 sensory histidine kin 96.4 0.0042 9.1E-08 71.3 5.9 100 106-237 436-536 (542)
37 TIGR01386 cztS_silS_copS heavy 96.4 0.004 8.7E-08 69.6 5.5 99 107-234 357-456 (457)
38 PRK10364 sensor protein ZraS; 96.4 0.0046 1E-07 70.2 5.7 96 107-236 352-448 (457)
39 PRK05644 gyrB DNA gyrase subun 96.3 0.0058 1.3E-07 73.1 6.6 135 106-267 40-208 (638)
40 PRK10815 sensor protein PhoQ; 96.3 0.005 1.1E-07 71.2 5.4 97 107-237 382-479 (485)
41 PRK11360 sensory histidine kin 96.2 0.0064 1.4E-07 69.8 5.9 96 107-236 504-601 (607)
42 PRK15347 two component system 96.2 0.0046 9.9E-08 76.2 4.9 98 106-236 516-614 (921)
43 KOG1977 DNA mismatch repair pr 96.2 0.0039 8.5E-08 72.9 3.9 49 105-172 23-71 (1142)
44 PRK09303 adaptive-response sen 96.2 0.0064 1.4E-07 67.9 5.4 100 106-235 275-376 (380)
45 PRK11466 hybrid sensory histid 96.1 0.0063 1.4E-07 75.1 5.4 96 107-235 565-661 (914)
46 PRK15053 dpiB sensor histidine 96.0 0.012 2.5E-07 68.3 6.8 103 107-236 436-539 (545)
47 PRK09467 envZ osmolarity senso 95.9 0.0093 2E-07 66.7 5.1 82 138-235 350-432 (435)
48 TIGR02956 TMAO_torS TMAO reduc 95.9 0.011 2.3E-07 73.4 6.0 99 106-235 582-682 (968)
49 PRK11091 aerobic respiration c 95.6 0.017 3.6E-07 70.3 6.2 102 106-235 401-504 (779)
50 TIGR03785 marine_sort_HK prote 95.6 0.017 3.6E-07 70.1 6.0 101 106-234 600-702 (703)
51 COG0642 BaeS Signal transducti 95.6 0.014 3E-07 60.6 4.6 48 106-168 231-278 (336)
52 PRK13837 two-component VirA-li 95.5 0.018 3.9E-07 70.9 6.0 97 106-236 563-675 (828)
53 PRK10337 sensor protein QseC; 95.5 0.018 3.9E-07 64.8 5.4 93 107-234 356-449 (449)
54 COG4191 Signal transduction hi 95.4 0.02 4.4E-07 66.6 5.6 96 110-236 504-601 (603)
55 PRK10490 sensor protein KdpD; 95.4 0.017 3.6E-07 71.9 5.2 101 106-236 781-882 (895)
56 PRK09835 sensor kinase CusS; P 95.2 0.023 5E-07 64.3 5.1 83 138-235 396-479 (482)
57 PRK11107 hybrid sensory histid 95.1 0.026 5.6E-07 69.5 5.7 101 106-235 411-517 (919)
58 PRK10618 phosphotransfer inter 95.0 0.034 7.3E-07 69.2 6.4 101 106-236 568-672 (894)
59 PRK10841 hybrid sensory kinase 94.9 0.034 7.4E-07 69.5 5.8 102 106-236 565-667 (924)
60 PRK03660 anti-sigma F factor; 94.5 0.085 1.8E-06 50.5 6.4 97 106-236 42-138 (146)
61 TIGR01925 spIIAB anti-sigma F 94.1 0.086 1.9E-06 50.0 5.4 95 106-234 42-136 (137)
62 PRK10547 chemotaxis protein Ch 94.1 0.12 2.5E-06 62.4 7.6 55 108-168 390-448 (670)
63 PRK09959 hybrid sensory histid 93.9 0.067 1.5E-06 68.3 5.4 99 106-235 831-935 (1197)
64 COG3290 CitA Signal transducti 93.9 0.079 1.7E-06 61.4 5.4 98 106-236 430-531 (537)
65 PRK10600 nitrate/nitrite senso 93.8 0.049 1.1E-06 64.0 3.9 27 138-164 489-515 (569)
66 PRK13557 histidine kinase; Pro 93.4 0.087 1.9E-06 60.2 4.8 68 151-236 326-394 (540)
67 PRK11073 glnL nitrogen regulat 93.3 0.14 2.9E-06 55.6 5.9 94 106-235 240-346 (348)
68 TIGR01058 parE_Gpos DNA topois 93.1 0.2 4.3E-06 60.2 7.3 137 106-267 37-206 (637)
69 COG0187 GyrB Type IIA topoisom 92.6 0.34 7.4E-06 57.2 8.0 138 105-268 38-210 (635)
70 KOG0787 Dehydrogenase kinase [ 90.4 0.75 1.6E-05 51.4 7.4 121 105-239 262-383 (414)
71 KOG1979 DNA mismatch repair pr 90.2 0.68 1.5E-05 54.1 7.1 50 101-168 25-75 (694)
72 PLN03128 DNA topoisomerase 2; 89.7 0.68 1.5E-05 58.9 7.2 46 106-164 55-100 (1135)
73 COG5000 NtrY Signal transducti 89.3 0.55 1.2E-05 55.3 5.5 52 110-170 607-660 (712)
74 PRK04069 serine-protein kinase 89.1 0.58 1.3E-05 46.3 4.9 96 106-233 45-140 (161)
75 COG3920 Signal transduction hi 89.0 0.7 1.5E-05 48.4 5.7 48 107-165 126-175 (221)
76 PTZ00108 DNA topoisomerase 2-l 88.6 1.2 2.7E-05 57.5 8.5 49 106-164 60-108 (1388)
77 PLN03237 DNA topoisomerase 2; 88.3 0.69 1.5E-05 59.7 6.0 46 106-164 80-125 (1465)
78 PRK13560 hypothetical protein; 87.4 0.61 1.3E-05 56.2 4.6 45 107-164 715-762 (807)
79 PHA02569 39 DNA topoisomerase 87.2 0.74 1.6E-05 55.1 5.1 47 106-165 48-94 (602)
80 PRK11644 sensory histidine kin 85.7 0.73 1.6E-05 53.7 3.9 43 107-164 414-456 (495)
81 COG0643 CheA Chemotaxis protei 85.4 1 2.2E-05 54.9 5.1 54 107-168 436-495 (716)
82 COG2205 KdpD Osmosensitive K+ 84.9 1.3 2.8E-05 54.0 5.5 87 135-237 793-880 (890)
83 PTZ00109 DNA gyrase subunit b; 83.4 1.6 3.6E-05 53.9 5.6 45 106-165 132-176 (903)
84 COG4585 Signal transduction hi 81.6 1.5 3.3E-05 48.7 4.1 47 106-167 282-328 (365)
85 PF13581 HATPase_c_2: Histidin 81.6 2.8 6E-05 38.9 5.3 92 105-233 33-124 (125)
86 COG3850 NarQ Signal transducti 81.0 1.9 4.1E-05 50.3 4.6 43 107-164 485-527 (574)
87 TIGR01924 rsbW_low_gc serine-p 80.5 2.4 5.1E-05 42.0 4.6 97 106-234 45-141 (159)
88 KOG1978 DNA mismatch repair pr 78.2 1.4 3E-05 52.6 2.5 49 102-168 19-68 (672)
89 COG2972 Predicted signal trans 75.7 6.8 0.00015 45.2 7.2 56 101-168 348-405 (456)
90 COG2172 RsbW Anti-sigma regula 74.9 9.5 0.00021 37.5 7.0 48 105-162 42-89 (146)
91 COG4192 Signal transduction hi 72.5 6 0.00013 45.6 5.5 97 107-238 568-668 (673)
92 COG5002 VicK Signal transducti 70.2 4.5 9.9E-05 45.2 3.8 79 139-235 362-447 (459)
93 PRK10935 nitrate/nitrite senso 67.8 5.9 0.00013 46.0 4.4 25 139-163 492-517 (565)
94 PRK13559 hypothetical protein; 62.8 8.3 0.00018 42.1 4.1 45 107-164 271-319 (361)
95 COG4564 Signal transduction hi 62.2 28 0.0006 38.9 7.8 97 102-239 354-450 (459)
96 COG4251 Bacteriophytochrome (l 59.2 11 0.00024 45.0 4.5 34 139-172 657-692 (750)
97 KOG1845 MORC family ATPases [C 57.1 6.1 0.00013 48.4 2.0 111 106-235 149-262 (775)
98 COG2865 Predicted transcriptio 44.9 39 0.00084 39.5 5.8 103 82-212 237-357 (467)
99 PF12588 PSDC: Phophatidylseri 41.2 46 0.00099 32.8 4.9 58 661-723 2-64 (141)
100 PF06112 Herpes_capsid: Gammah 32.4 56 0.0012 32.4 3.9 23 655-677 16-38 (147)
101 PF04122 CW_binding_2: Putativ 29.8 1E+02 0.0022 27.2 5.0 72 487-568 8-80 (92)
102 COG3851 UhpB Signal transducti 28.2 65 0.0014 36.6 4.0 28 136-163 428-455 (497)
103 smart00481 POLIIIAc DNA polyme 27.3 78 0.0017 26.2 3.5 57 487-545 3-61 (67)
104 COG1578 Uncharacterized conser 22.4 3.9E+02 0.0084 29.3 8.3 28 540-567 153-185 (285)
105 KOG1845 MORC family ATPases [C 21.5 39 0.00085 41.7 0.8 19 152-170 2-20 (775)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-175 Score=1400.95 Aligned_cols=640 Identities=48% Similarity=0.857 Sum_probs=592.2
Q ss_pred CCccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeC
Q 004236 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (766)
Q Consensus 78 ~~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 157 (766)
+..|+|+||+|++|||+||+|+||+|++||||||||||+||++|+|+++||++.+++...++.|+|..|++++.|.|+|+
T Consensus 70 ~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~Dt 149 (785)
T KOG0020|consen 70 SKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDT 149 (785)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHhhhhhhccCcHHHHHHhhhcccC-CCCCCcccccccceeeeeeecceeE--------------------
Q 004236 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDL-GADNGLIGQFGVGFYSAFLVAQKVE-------------------- 216 (766)
Q Consensus 158 GiGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~-~~~~~~IGqFGIGf~S~Fmvad~Ve-------------------- 216 (766)
|||||++||++||||||+|||++|++++++.++. +.-.++||||||||||+|+|||+|.
T Consensus 150 GiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESdan~F 229 (785)
T KOG0020|consen 150 GIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESDANSF 229 (785)
T ss_pred cCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeeccCcce
Confidence 9999999999999999999999999999854322 1223699999999999999999995
Q ss_pred ---ecCCCcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCC--CC-CC-----
Q 004236 217 ---ETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP--EE-GE----- 285 (766)
Q Consensus 217 ---s~~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~--~~-~~----- 285 (766)
.++.++..+|||.|+||||+++. +||++++|++||++||+||+|||++|..|+++++++-+|++ ++ +.
T Consensus 230 svseDprg~tL~RGt~ItL~LkeEA~-dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~~ed~ea 308 (785)
T KOG0020|consen 230 SVSEDPRGNTLGRGTEITLYLKEEAG-DYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDSTEDKEA 308 (785)
T ss_pred eeecCCCCCcccCccEEEEEehhhhh-hhcchhHHHHHHHHHHHhcCCceeeeeccceeeecccccccccccccccchhh
Confidence 13467788999999999999998 99999999999999999999999999999877665533321 11 11
Q ss_pred CCccc-cccccccccccccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeC
Q 004236 286 EQPEG-EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPG 364 (766)
Q Consensus 286 ~~~~~-~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~ 364 (766)
.++++ ++++|+|+|.+.+|+|+.+|+.+|||+|.|++|+++||..|||++++++.+|++|+||++||.+.|++|||||.
T Consensus 309 ~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiLyVP~ 388 (785)
T KOG0020|consen 309 AVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSILYVPK 388 (785)
T ss_pred hhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEEEeCC
Confidence 12222 34579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccc-ccccCeEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHH
Q 004236 365 MGPLNNEEIMN-PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFD 443 (766)
Q Consensus 365 ~~p~~~~~~~~-~~~~~ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~ 443 (766)
.+|.++|+.+. ++..+|+||||||||+|++. ++||.||+||||||||+|||||||||+||++++|++|+|.|++|+++
T Consensus 389 ~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~-dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvrK~LD 467 (785)
T KOG0020|consen 389 KAPRDLFDEYGSKKSDNIKLYVRRVFITDEFH-DMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVRKVLD 467 (785)
T ss_pred CCchHHHHHhccccccceeEEEEEEEecchHH-HHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997655 56789999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCHHHHHH-HHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCH
Q 004236 444 MIQDISQSENKEDYKK-FWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSL 522 (766)
Q Consensus 444 ~L~~la~~~d~e~Y~k-F~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~ 522 (766)
||++++. ++|.. ||++||.+||+|++||+.||.+|++||||.||+++.+.+||++|++|||+.|+.|||++|.|+
T Consensus 468 mikKia~----e~~~d~FW~EFgtniKLGviED~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~IyymaGssr 543 (785)
T KOG0020|consen 468 MIKKIAG----EKYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMAGSSR 543 (785)
T ss_pred HHHHhhc----cccchHHHHHhccceeeeeeeCcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEecCCcH
Confidence 9999994 56776 999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHhcCcchHHHhhcCceEEecCCcchHHHHHHHhhccCcceeeccccccCCCCchhHhH--HhhHHHHHHHHHHHHHH-
Q 004236 523 KSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQ- 599 (766)
Q Consensus 523 ~~~~~SP~lE~~~~kG~EVL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~eee~~--e~~~~~f~~L~~~lK~~- 599 (766)
++++.|||+|++.++||||||+++|+||||||.|.+|+||+||+|.++|+.+++.+..++ +..+++|++|++|+|..
T Consensus 544 ~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~k~~a 623 (785)
T KOG0020|consen 544 KEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDKSEKTKESHEALEEEFEPLTKWLKDKA 623 (785)
T ss_pred hhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCcccchhHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999999987765544 56788999999999986
Q ss_pred hCCceeEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcC---CCCccccccCceeEEECCCChHHHHHHHhhhcCCC
Q 004236 600 LGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALG---DTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPD 676 (766)
Q Consensus 600 L~~kV~~V~vS~RL~~sP~~lv~se~g~s~~Merimkaq~~~---d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~ 676 (766)
|.++|++++||+||++|||++|++.||||+||||||++|+.+ |.+...|+.+|++|||||+||||+.|+.++.++++
T Consensus 624 lkd~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~adee 703 (785)
T KOG0020|consen 624 LKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRIAADEE 703 (785)
T ss_pred HHHHHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHhhcCcc
Confidence 569999999999999999999999999999999999999886 44444578899999999999999999999999999
Q ss_pred chHHHHHHHHHhHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCC
Q 004236 677 STDAKRAVDLLYDTALISSGFTPDSPADLGNKIYEMMAMALGGRWGRSD 725 (766)
Q Consensus 677 ~~~~~~lv~lLyd~AlL~sG~~ledp~~f~~ri~~Ll~~~L~~~~~~~~ 725 (766)
++.++++|.+||.+|.|.+||.+.|+..|+.||++||+++|+ |+.++
T Consensus 704 D~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~--is~Da 750 (785)
T KOG0020|consen 704 DETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLN--ISPDA 750 (785)
T ss_pred cchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcC--CCccc
Confidence 999999999999999999999999999999999999999999 88763
No 2
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-170 Score=1404.29 Aligned_cols=595 Identities=48% Similarity=0.806 Sum_probs=569.7
Q ss_pred CCccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeC
Q 004236 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (766)
Q Consensus 78 ~~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 157 (766)
.+.|+|.||||+++||+++++++|||+++|||||||||+|||+|+||+++++++.+ .+++.|+|++|+++++|+|.|+
T Consensus 32 ~~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~~nk~~~tlti~Dt 109 (656)
T KOG0019|consen 32 EPQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRIITNKDKRTITIQDT 109 (656)
T ss_pred ccccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEeccCCCcceEEEEec
Confidence 35699999999999999999999999999999999999999999999999999876 8899999999999999999999
Q ss_pred CCCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ec-----
Q 004236 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ET----- 218 (766)
Q Consensus 158 GiGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~----- 218 (766)
|||||++||++||||||+|||+.|++++++ ++.+.++||||||||||+|||||+|. +.
T Consensus 110 GIGMTk~dLvnnLGTIAkSGtK~Fmealke---a~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~gs~ 186 (656)
T KOG0019|consen 110 GIGMTKEDLVNNLGTIAKSGSKAFLEALKE---AEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRGSY 186 (656)
T ss_pred CCCcCHHHHHhhhhhhhhcccHHHHHHHHh---cccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCCce
Confidence 999999999999999999999999999995 56788999999999999999999996 11
Q ss_pred --CCCcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCCCCCCCCccccccccc
Q 004236 219 --DPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKK 296 (766)
Q Consensus 219 --~~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 296 (766)
...+...|||+|+||||++.. +|+++.+|+++|++||+||.|||+++++
T Consensus 187 ~v~~~~~~~rGTki~l~lKe~~~-ey~ee~rikeiVKK~S~Fv~yPI~l~~e---------------------------- 237 (656)
T KOG0019|consen 187 EIAEASGLRTGTKIVIHLKEGDC-EFLEEKRIKEVVKKYSNFVSYPIYLNGE---------------------------- 237 (656)
T ss_pred EEeeccCccccceEEeeehhhhh-hhccHhHHHHHHhhccccccccchhhhh----------------------------
Confidence 122347999999999999999 9999999999999999999999999873
Q ss_pred cccccccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCccccccc
Q 004236 297 TTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNP 376 (766)
Q Consensus 297 k~~~~~~~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~ 376 (766)
.+|..+|||+|+|.+||.|||.+|||+++++|++||++.||++||+++||+|||||.++||++|++ .+
T Consensus 238 -----------k~N~tKpiW~rnp~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap~~lF~~-~k 305 (656)
T KOG0019|consen 238 -----------RVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAPNSMFDM-RK 305 (656)
T ss_pred -----------hhhccCcccccCchhhhHHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCcchhhhh-hh
Confidence 399999999999999999999999999999999999999999999999999999999999999984 47
Q ss_pred cccCeEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHHH
Q 004236 377 KTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKED 456 (766)
Q Consensus 377 ~~~~ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e~ 456 (766)
+++||+||+|||||+|+|. +++|+||+||+|||||+|||||+|||+||+|++|++||+.|++|++++|.++| +|+|+
T Consensus 306 k~n~i~Ly~rrv~I~d~~~-~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e~a--~d~e~ 382 (656)
T KOG0019|consen 306 KKNGIKLYARRVLITDDAG-DLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQDLA--KDAEK 382 (656)
T ss_pred ccCceEEEEEEEecCchhH-HHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHh--hhHHH
Confidence 7899999999999999998 99999999999999999999999999999999999999999999999999999 79999
Q ss_pred HHHHHHHHhHHhheecccCcccHHh-hcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHh
Q 004236 457 YKKFWENFGRFLKLGCVEDSGNHKR-LAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLV 535 (766)
Q Consensus 457 Y~kF~~~f~~~lK~G~~eD~~nr~~-l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~ 535 (766)
|++||++||++||+||++|.+|+.+ +++||||+||+++++++||++|++||+++|+.||||+|+|+.++++|||+|+++
T Consensus 383 Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp~~E~~k 462 (656)
T KOG0019|consen 383 YKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAESSPYYEAFK 462 (656)
T ss_pred HHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccccccccHHHHHHhhcccccceEEeccchhhhhhcchHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEecCCcchHHHHHHHhhccCcceeeccccccCCCCchhHhH--HhhHHHHHHHHHHHHHHhCCceeEEEEeecC
Q 004236 536 QKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRL 613 (766)
Q Consensus 536 ~kG~EVL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~eee~~--e~~~~~f~~L~~~lK~~L~~kV~~V~vS~RL 613 (766)
++|+|||||++||||+++++|++|+||+|++|+++++++++.+++++ ++.+++|+.||+|||++||++|++|++|+||
T Consensus 463 ~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lck~mK~iL~~kVekV~vs~Rl 542 (656)
T KOG0019|consen 463 KKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELCKWMKEILGSKVEKVTVNNRL 542 (656)
T ss_pred hcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhcCceEEEEecCcc
Confidence 99999999999999999999999999999999999999986655433 6777899999999999999999999999999
Q ss_pred CCCCEEEEeCCCCccHHHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHhhhcCCCchHHHHHHHHHhHHHHH
Q 004236 614 SSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALI 693 (766)
Q Consensus 614 ~~sP~~lv~se~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~~~~~~~lv~lLyd~AlL 693 (766)
+++|||||+++|||+++|+|+|+||+..|++.++||.+|++|||||+||||+.|.+++++++++ .+++++.|||+||||
T Consensus 543 vssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~dk~d-~~k~lv~llfetALl 621 (656)
T KOG0019|consen 543 VSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRESDKND-TAKDLVEQLYETALI 621 (656)
T ss_pred cCCceEEEecccccchhHHHHHhhhhccccChhhhccccceeeeCCCChHHHHHHHHHhcCcch-hHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998877 999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHHHHhCCCCCCC
Q 004236 694 SSGFTPDSPADLGNKIYEMMAMALGGRWGRS 724 (766)
Q Consensus 694 ~sG~~ledp~~f~~ri~~Ll~~~L~~~~~~~ 724 (766)
++||+++||+.|+.|||+||..+|+ ++++
T Consensus 622 ssGfsl~dP~~~~~ri~~ml~~~l~--~~e~ 650 (656)
T KOG0019|consen 622 SAGFSLDDPQTMVGRINRLLKSGLG--RDED 650 (656)
T ss_pred HcCCCcCChHHHhhHHHHHHHHHhc--cCCC
Confidence 9999999999999999999999999 6654
No 3
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=1.7e-167 Score=1449.25 Aligned_cols=634 Identities=47% Similarity=0.836 Sum_probs=569.9
Q ss_pred cccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCC
Q 004236 81 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIG 160 (766)
Q Consensus 81 e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiG 160 (766)
|+|+||||+++||+||+|+||||++||||||||||+|||+|+||++++++.+.....++.|+|..|.++++|+|+|||||
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiG 82 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIG 82 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCC
Confidence 78999999999999999999999999999999999999999999999999887777889999999999999999999999
Q ss_pred CCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC-------
Q 004236 161 MTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD------- 219 (766)
Q Consensus 161 Mt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~------- 219 (766)
||++||.++|||||+||++.|+++++ .+.+.++||||||||||||||||+|+ +++
T Consensus 83 Mt~edl~~~LgtIa~SGt~~f~~~~~----~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i~ 158 (701)
T PTZ00272 83 MTKADLVNNLGTIARSGTKAFMEALE----AGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTIT 158 (701)
T ss_pred CCHHHHHHHhhhhhhcchHHHHHHhh----ccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEEE
Confidence 99999999999999999999999886 34467899999999999999999996 111
Q ss_pred --CCcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCC------CCCC-----C
Q 004236 220 --PEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP------EEGE-----E 286 (766)
Q Consensus 220 --~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~------~~~~-----~ 286 (766)
+....+|||+|+|||+++.. +|+++++|+++|++||+||+|||+++..++.+.++++++++ ++++ +
T Consensus 159 ~~~~~~~~~GT~I~L~Lk~d~~-ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (701)
T PTZ00272 159 STPESDMKRGTRITLHLKEDQM-EYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEE 237 (701)
T ss_pred eCCCCCCCCCCEEEEEECCchH-HhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhccccccccccccccc
Confidence 12245899999999999998 99999999999999999999999998655444333221100 0011 0
Q ss_pred Ccc--ccccccccccccccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeC
Q 004236 287 QPE--GEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPG 364 (766)
Q Consensus 287 ~~~--~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~ 364 (766)
+++ ++++++++++++.+++|++||+++|||+|+|++||+|||++|||+++++|++||+|+||++||+++|+||||||+
T Consensus 238 ~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~llyiP~ 317 (701)
T PTZ00272 238 VKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPK 317 (701)
T ss_pred ccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEEEEEeCC
Confidence 111 123456677888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccCeEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHH
Q 004236 365 MGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDM 444 (766)
Q Consensus 365 ~~p~~~~~~~~~~~~~ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~ 444 (766)
.+|+++|+ .+..+++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++
T Consensus 318 ~~~~~~~~-~~~~~~~i~LY~~rVfI~d~~~-~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~ki~~~ 395 (701)
T PTZ00272 318 RAPFDMFE-PNKKRNNIKLYVRRVFIMDNCE-DLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEM 395 (701)
T ss_pred CCccchhh-hhhccCceEEEEeeEEEecchh-hhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHH
Confidence 99999886 3335789999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHH
Q 004236 445 IQDISQSENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKS 524 (766)
Q Consensus 445 L~~la~~~d~e~Y~kF~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~ 524 (766)
|.++| +++++|.+||++||.+||+|+++|..||++|++||||+||.++++++||+||++|||++|+.|||++|+|+++
T Consensus 396 l~~la--~~~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~s~~~ 473 (701)
T PTZ00272 396 FDEVA--ENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKK 473 (701)
T ss_pred HHHHh--hCHHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCCCHHH
Confidence 99999 4689999999999999999999999999999999999999876789999999999999999999999999999
Q ss_pred HhcCcchHHHhhcCceEEecCCcchHHHHHHHhhccCcceeeccccccCCCCchhHh-H-HhhHHHHHHHHHHHHHHhCC
Q 004236 525 AKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVK-E-RETKQEFNLLCDWIKQQLGD 602 (766)
Q Consensus 525 ~~~SP~lE~~~~kG~EVL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~eee~-~-e~~~~~f~~L~~~lK~~L~~ 602 (766)
+++|||+|.|++||||||||+||||||||++|.+|+|++|++|+++++++++.++++ + ++.+++|++|++|||++||+
T Consensus 474 ~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~~e~~~~~~~~~~~~~L~~~~k~~L~~ 553 (701)
T PTZ00272 474 LETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGD 553 (701)
T ss_pred HHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccccchhhhhhhHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999886433321 1 34456899999999999999
Q ss_pred ceeEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHhhhcCCCchHHHH
Q 004236 603 KVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKR 682 (766)
Q Consensus 603 kV~~V~vS~RL~~sP~~lv~se~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~~~~~~~ 682 (766)
+|.+|++|+||++||||||++++|++++|+|||++|++++..+..+|.++++|||||+||||++|++++..+++++.+++
T Consensus 554 kV~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~~~~~~~~~ 633 (701)
T PTZ00272 554 KVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKD 633 (701)
T ss_pred cccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHHHHHHHHhhcccchHHHHH
Confidence 99999999999999999999999999999999999976443333456789999999999999999887655666677999
Q ss_pred HHHHHhHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCC
Q 004236 683 AVDLLYDTALISSGFTPDSPADLGNKIYEMMAMALGGRWGRSD 725 (766)
Q Consensus 683 lv~lLyd~AlL~sG~~ledp~~f~~ri~~Ll~~~L~~~~~~~~ 725 (766)
+++||||+|||++|++++||+.|++|+++||..+|+ ++.++
T Consensus 634 la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~--~~~~~ 674 (701)
T PTZ00272 634 LVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLS--LDEEE 674 (701)
T ss_pred HHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcC--CCccc
Confidence 999999999999999999999999999999988899 76653
No 4
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=1.3e-165 Score=1433.04 Aligned_cols=637 Identities=43% Similarity=0.742 Sum_probs=568.8
Q ss_pred CCccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeC
Q 004236 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (766)
Q Consensus 78 ~~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 157 (766)
.+.++|+||||+++||+||+++||||++||||||||||+|||+|+||++++++.+.....++.|+|..|+++++|+|+||
T Consensus 63 ~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~Dn 142 (814)
T PTZ00130 63 SGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDT 142 (814)
T ss_pred cccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999888878899999999999999999999
Q ss_pred CCCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC----
Q 004236 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD---- 219 (766)
Q Consensus 158 GiGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~---- 219 (766)
|||||++||++||||||+|||+.|++++++ .+.+..+||||||||||||||||+|+ |++
T Consensus 143 GIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~---~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y 219 (814)
T PTZ00130 143 GIGMTKEDLINNLGTIAKSGTSNFLEAISK---SGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKF 219 (814)
T ss_pred CCCCCHHHHHHHhhhhcccccHHHHHHhhc---cCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcE
Confidence 999999999999999999999999999873 23456899999999999999999996 111
Q ss_pred ------CCcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCC---CCCC----C
Q 004236 220 ------PEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP---EEGE----E 286 (766)
Q Consensus 220 ------~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~---~~~~----~ 286 (766)
.+.+.+|||+|+|||+++.. +|++.++|++||++||+||+|||++++.++.++++++++.. ++++ +
T Consensus 220 ~I~e~~~~~~~~rGT~I~LhLked~~-efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e 298 (814)
T PTZ00130 220 TIYKDPRGSTLKRGTRISLHLKEDAT-NLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEMENDPNYDSVK 298 (814)
T ss_pred EEEECCCCCCCCCCcEEEEEECCchh-hhccHHHHHHHHHHhhccCCCCEEEcccccccccccccccccccccccccccc
Confidence 12345899999999999998 99999999999999999999999998765444443321100 0010 0
Q ss_pred Ccc-ccccccccccccccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCC
Q 004236 287 QPE-GEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGM 365 (766)
Q Consensus 287 ~~~-~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~ 365 (766)
+++ +++++++|++++.+++|++||+.+|||+|+|++||+|||++|||+++++|++||+|+||++||+++|+||||||+.
T Consensus 299 ~~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~~dPl~~iH~~~Eg~~~~~~LLYIP~~ 378 (814)
T PTZ00130 299 VEETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHIHFFAEGEIEFKCLIYIPSR 378 (814)
T ss_pred ccccccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCccCCceeeeeccCCCeeEEEEEEecCC
Confidence 111 1234567788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccCeEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHH
Q 004236 366 GPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMI 445 (766)
Q Consensus 366 ~p~~~~~~~~~~~~~ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L 445 (766)
+|++++. ....+++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|
T Consensus 379 ap~~~~~-~~~~~~~ikLYvrrVfI~d~~~-dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~kkil~~L 456 (814)
T PTZ00130 379 APSINDH-LFTKQNSIKLYVRRVLVADEFV-EFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKILDTF 456 (814)
T ss_pred Cccchhh-hhhccCceEEEEeeEEeecchh-hhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 9998764 2235799999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc----------------------------cCHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcc
Q 004236 446 QDISQS----------------------------ENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEEL 497 (766)
Q Consensus 446 ~~la~~----------------------------~d~e~Y~kF~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~~~ 497 (766)
.+++++ ++|++|.+||++||.+||+||++|..|+++|++||||+||++ +++
T Consensus 457 ~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss~~-~~~ 535 (814)
T PTZ00130 457 RTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTMLH-PKS 535 (814)
T ss_pred HHHHhhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeCCC-CCc
Confidence 999861 578999999999999999999999999999999999999975 378
Q ss_pred cCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHhhcCceEEecCCcchHHHHHHHhhccCcceeeccccccCCCCc
Q 004236 498 ISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDE 577 (766)
Q Consensus 498 ~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~~kG~EVL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~ 577 (766)
+||+||++||+++|+.|||++|++++++++|||+|.|+++|||||||++||||++|++|.+|+|++|++|++++++++..
T Consensus 536 ~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~~~~ 615 (814)
T PTZ00130 536 ISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFELT 615 (814)
T ss_pred cCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEecccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred hhHhH--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcCCCCccccccCceeE
Q 004236 578 DEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRIL 655 (766)
Q Consensus 578 eee~~--e~~~~~f~~L~~~lK~~L~~kV~~V~vS~RL~~sP~~lv~se~g~s~~Merimkaq~~~d~~~~~~~~~kk~L 655 (766)
+++++ ++.+++|++|++|||++|+++|.+|++|+||++||||||++++|||++|+|||++|.. ++.+..++.++++|
T Consensus 616 ~~e~~~~~~~~~~~~~L~~~~k~~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~-~~~~~~~~~~k~iL 694 (814)
T PTZ00130 616 EDEKKKEEKVKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVN-NSDQIKAMSGQKIL 694 (814)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhc-cccccccccCCeEE
Confidence 32221 3445679999999999999999999999999999999999999999999999999863 22223466789999
Q ss_pred EECCCChHHHHHHHhhhcCCCchHHHHHHHHHhHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCC
Q 004236 656 EINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPADLGNKIYEMMAMALGGRWGRS 724 (766)
Q Consensus 656 EINp~HPLIk~L~~~~~~~~~~~~~~~lv~lLyd~AlL~sG~~ledp~~f~~ri~~Ll~~~L~~~~~~~ 724 (766)
||||+||||++|+.++..+++++.+++++++|||||+|++|++++||+.|++||++||..+|+ ++..
T Consensus 695 EINp~Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~--~~~~ 761 (814)
T PTZ00130 695 EINPDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLG--VDNN 761 (814)
T ss_pred EECCCCHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC--CCcc
Confidence 999999999999876545555667999999999999999999999999999999999999998 6655
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-161 Score=1356.87 Aligned_cols=593 Identities=46% Similarity=0.776 Sum_probs=551.6
Q ss_pred CccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 004236 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (766)
Q Consensus 79 ~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (766)
..|++.||+|+++||+||+|||||||+||||||||||+|||+|+||++++++.......+++|+|..|+++++|+|+|||
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNG 82 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNG 82 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCC
Confidence 35899999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred CCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE---------------ecC----
Q 004236 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE---------------ETD---- 219 (766)
Q Consensus 159 iGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve---------------s~~---- 219 (766)
||||++|++++|||||+|||++|++.+.+++ .+.++||||||||||||||||+|+ |++
T Consensus 83 IGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~---~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~y 159 (623)
T COG0326 83 IGMTKDEVIENLGTIAKSGTKEFLESLSEDQ---KDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEY 159 (623)
T ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHhcccc---ccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCce
Confidence 9999999999999999999999999988532 578899999999999999999996 222
Q ss_pred ---CCcCCC-CceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCCCCCCCCcccccccc
Q 004236 220 ---PEKLLK-RGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTK 295 (766)
Q Consensus 220 ---~~~~~~-~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 295 (766)
+.+..+ +||+|+|||+++.. +|+++++|+++|++||.||++||++.+++..+ +
T Consensus 160 tv~~~~~~~~~GT~I~L~Lk~~e~-efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~------~---------------- 216 (623)
T COG0326 160 TVEDIDKEPRRGTEITLHLKEEED-EFLEEWRLREIVKKYSDHIAYPIYIEGEKEKD------E---------------- 216 (623)
T ss_pred EEeeccCCCCCCcEEEEEECCchH-HHhhhhHHHHHHHHHhcccccceEEeeecccc------c----------------
Confidence 234456 59999999999998 99999999999999999999999997753210 0
Q ss_pred ccccccccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCcccccc
Q 004236 296 KTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMN 375 (766)
Q Consensus 296 ~k~~~~~~~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~ 375 (766)
.+.+|+.||+++|||+|+++++++|+|++|||+++++|++||.|+|+++||.++|++|||||+++||++|. .
T Consensus 217 ------~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aPfdl~~--~ 288 (623)
T COG0326 217 ------EVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPFDLFR--R 288 (623)
T ss_pred ------cchhHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEEEEEEEccCCCCccccc--c
Confidence 03468999999999999999999999999999999999999999999999999999999999999999996 4
Q ss_pred ccccCeEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHH
Q 004236 376 PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKE 455 (766)
Q Consensus 376 ~~~~~ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e 455 (766)
..++|++||||||||||+|. +|||+||+||||||||+|||||||||+||+|++++.||+.|++||+++|++||+ ++||
T Consensus 289 ~~k~glkLYv~rVfI~Dd~~-~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~La~-~~~e 366 (623)
T COG0326 289 DRKRGLKLYVNRVFIMDDAE-DLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKLAK-DDPE 366 (623)
T ss_pred cccCCcEEEEeeeEEeCChh-hhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHh-cCHH
Confidence 46899999999999999999 999999999999999999999999999999999999999999999999999997 8899
Q ss_pred HHHHHHHHHhHHhheecccCcccHHhhcCccceeec-cCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHH
Q 004236 456 DYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTS-KSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKL 534 (766)
Q Consensus 456 ~Y~kF~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts-~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~ 534 (766)
+|.+||++||.+||+|+++|..|+++|++||||.|| .++++++||+|||+|||++|+.|||++|+|..++++||++|.+
T Consensus 367 ~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~sP~lE~~ 446 (623)
T COG0326 367 KYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSPHLELF 446 (623)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEeccccHHHHhcCchHHHH
Confidence 999999999999999999999999999999999995 4568899999999999999999999999999999999999999
Q ss_pred hhcCceEEecCCcchHHHHHHHhhccCcceeeccccccCCCCchhH--hH-HhhHHHHHHHHHHHHHHhCCceeEEEEee
Q 004236 535 VQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEV--KE-RETKQEFNLLCDWIKQQLGDKVAKVQVSK 611 (766)
Q Consensus 535 ~~kG~EVL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~eee--~~-e~~~~~f~~L~~~lK~~L~~kV~~V~vS~ 611 (766)
++||||||||+|+||+++|..+.+|+|++|++|+++++.+....++ .. ++.+.+|++|++++|++|+++|.+|++|+
T Consensus 447 k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~L~~~vk~Vr~s~ 526 (623)
T COG0326 447 KAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKVKDVRLSH 526 (623)
T ss_pred HhcCcEEEecCccchHHHhhhhhhccCCcceeeccccccccccchhhhhhhHHHHHHHHHHHHHHHHHhcCccceeEeec
Confidence 9999999999999999999999999999999999999988765433 22 56677899999999999999999999999
Q ss_pred cCCCCCEEEEeCCCCccHHHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHhhhcCCCchHHHHHHHHHhHHH
Q 004236 612 RLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTA 691 (766)
Q Consensus 612 RL~~sP~~lv~se~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~~~~~~~lv~lLyd~A 691 (766)
||+++|||++++.++++.+|+|+|++|++... ..+++|||||+||||++|.... |.+.+.+++++||+||
T Consensus 527 rl~dspa~l~~~~~~~~~~m~r~l~~~~~~~~------~~k~ilEiNp~h~lv~~L~~~~----d~~~~~~~~~llydqA 596 (623)
T COG0326 527 RLTDSPACLTTDGADLSTQMERLLKAQGQEVP------ESKKILEINPNHPLVKKLASLE----DEASVADLVELLYDQA 596 (623)
T ss_pred ccCCCcceeecCccchhHHHHHHHHhccccCC------ccccceeeCcccHHHHHHHhcc----cHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999865421 5789999999999999999973 4567999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHh
Q 004236 692 LISSGFTPDSPADLGNKIYEMMAMAL 717 (766)
Q Consensus 692 lL~sG~~ledp~~f~~ri~~Ll~~~L 717 (766)
||++|++++||+.|++|++++|..++
T Consensus 597 ll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 597 LLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred HHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=3.9e-140 Score=1218.48 Aligned_cols=585 Identities=48% Similarity=0.787 Sum_probs=538.0
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCC
Q 004236 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (766)
Q Consensus 80 ~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (766)
.|+++||+|+++||+||+++||||+++|||||||||+|||+|+||.+++++....+..++.|+|.+|+++++|+|+|||+
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~ 82 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGI 82 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCC
Confidence 58999999999999999999999999999999999999999999999999887767788999999999889999999999
Q ss_pred CCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e--------------cC----
Q 004236 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E--------------TD---- 219 (766)
Q Consensus 160 GMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s--------------~~---- 219 (766)
|||++|+..+|++||.||++.|+++++.. ...+..+||||||||||+||||++|+ + .+
T Consensus 83 GMt~eel~~~l~~ia~Sg~~~f~~k~~~~--~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~ 160 (613)
T PRK05218 83 GMTREEVIENLGTIAKSGTKEFLEKLKGD--QKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEY 160 (613)
T ss_pred CCCHHHHHHHHHhhccccchhHHHHhhcc--cccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCcee
Confidence 99999999999999999999999988631 12356899999999999999999996 1 01
Q ss_pred ---CCcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCCCCCCCCccccccccc
Q 004236 220 ---PEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKK 296 (766)
Q Consensus 220 ---~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 296 (766)
+....++||+|+|||+++.. +|++.++|+++|++||+|+++||+++++
T Consensus 161 ~i~~~~~~~~GT~I~l~Lk~~~~-e~~e~~~i~~li~kys~~l~~PI~~~~~---------------------------- 211 (613)
T PRK05218 161 TIEEIEKEERGTEITLHLKEDED-EFLDEWRIRSIIKKYSDFIPVPIKLEKE---------------------------- 211 (613)
T ss_pred EEeECCCCCCCcEEEEEECcchh-hhcCHHHHHHHHHHHHhcCCCCEEEecc----------------------------
Confidence 12234799999999999998 9999999999999999999999999542
Q ss_pred cccccccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCccccccc
Q 004236 297 TTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNP 376 (766)
Q Consensus 297 k~~~~~~~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~ 376 (766)
+|+++|+.+|+|+++++++++++|..||+.++++|.+||+|+|++++|++.|+|+||||+.+|+++++ ..
T Consensus 212 --------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~~~~~~~--~~ 281 (613)
T PRK05218 212 --------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPFDLFN--RD 281 (613)
T ss_pred --------cceeecCCccceecCCccccHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCCccchhh--hc
Confidence 36899999999999999999999999999999999999999999999999999999999999998874 23
Q ss_pred cccCeEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHHH
Q 004236 377 KTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKED 456 (766)
Q Consensus 377 ~~~~ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e~ 456 (766)
..++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.++|+ +|+++
T Consensus 282 ~~~~~~lyvn~v~I~d~~~-~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~la~-~d~~~ 359 (613)
T PRK05218 282 RKGGLKLYVKRVFIMDDAE-ELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKLAK-NDREK 359 (613)
T ss_pred ccccEEEEECcEEeeCchh-hhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh-hCHHH
Confidence 5789999999999999999 999999999999999999999999999999999999999999999999999997 89999
Q ss_pred HHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHhh
Q 004236 457 YKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQ 536 (766)
Q Consensus 457 Y~kF~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~~ 536 (766)
|++||++||.+||+||++|.+++++|++||||+||+ +++++||+||++||+++|+.|||++++|++++++|||+|.|++
T Consensus 360 y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~-~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~~e~~~~ 438 (613)
T PRK05218 360 YEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH-EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSPHLELFKK 438 (613)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC-CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhChHHHHHHh
Confidence 999999999999999999999999999999999996 5689999999999999999999999999999999999999999
Q ss_pred cCceEEecCCcchHHHHHHHhhccCcceeeccccccCCCC-ch-hHhH-HhhHHHHHHHHHHHHHHhCCceeEEEEeecC
Q 004236 537 KDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGD-ED-EVKE-RETKQEFNLLCDWIKQQLGDKVAKVQVSKRL 613 (766)
Q Consensus 537 kG~EVL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~-~e-ee~~-e~~~~~f~~L~~~lK~~L~~kV~~V~vS~RL 613 (766)
+|+||||+++|+||+++++|.+|+|++|++|+++++++++ .+ ++.. +..+++|++|++|+++.|+++|++|++|+||
T Consensus 439 ~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~v~~V~~s~rl 518 (613)
T PRK05218 439 KGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDVRLSHRL 518 (613)
T ss_pred cCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccccchhhhhhhhhHHHHHHHHHHHHHHhcCcceEEEEeccC
Confidence 9999999999999999999999999999999999998865 11 2111 3445689999999999999999999999999
Q ss_pred CCCCEEEEeCCCCccHHHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHhhhcCCCchHHHHHHHHHhHHHHH
Q 004236 614 SSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALI 693 (766)
Q Consensus 614 ~~sP~~lv~se~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~~~~~~~lv~lLyd~AlL 693 (766)
+++|||+|++++|++++|+|+|++|+. .+..++++|||||+||||++|++.. +.+.++.++++||+||+|
T Consensus 519 ~~~Pa~~v~~~~~~~~~mer~~~~~~~------~~~~~~~~LeiNp~hplI~~L~~~~----d~~~~~~~~~~Lyd~AlL 588 (613)
T PRK05218 519 TDSPACLVADEGDMSTQMEKLLKAAGQ------EVPESKPILEINPNHPLVKKLADEA----DEAKFKDLAELLYDQALL 588 (613)
T ss_pred CCCCeEEEeCccchHHHHHHHHHhhhh------cccccceEEEEcCCCHHHHHHHhcc----ChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998752 1234789999999999999998742 234599999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHHHHhC
Q 004236 694 SSGFTPDSPADLGNKIYEMMAMALG 718 (766)
Q Consensus 694 ~sG~~ledp~~f~~ri~~Ll~~~L~ 718 (766)
++|++++||+.|++|+++||.++++
T Consensus 589 ~~G~~~~d~~~~~~r~~~ll~~~~~ 613 (613)
T PRK05218 589 AEGGSLEDPAAFVKRLNELLLKLLA 613 (613)
T ss_pred hCCCCccCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999988754
No 7
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=1.8e-133 Score=1142.35 Aligned_cols=478 Identities=51% Similarity=0.885 Sum_probs=417.7
Q ss_pred cccchHHHHHHHHhhCCCcccceeecccccccccccccCCCC-----C-CC-------CCcc-----c--cccccccccc
Q 004236 241 EFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPE-----E-GE-------EQPE-----G--EKKTKKTTKT 300 (766)
Q Consensus 241 e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~~-----~-~~-------~~~~-----~--~~~~~~k~~~ 300 (766)
+||++++|++||++||+||+|||+++.+++++++++++++++ + ++ ..++ + ++++++|+++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~~ 80 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKEEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKVK 80 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT-TT--------SSEEEE----S-TTEEEEECC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 699999999999999999999999999988877776544110 0 00 0111 1 2356778888
Q ss_pred cccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCccccccccccC
Q 004236 301 EKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKN 380 (766)
Q Consensus 301 ~~~~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~ 380 (766)
+++++|++||+++|||+|+|++||++||++|||+++++|++||+|+||++||+++|+||||||+++|+++|+ ....+++
T Consensus 81 ~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~-~~~~~~~ 159 (531)
T PF00183_consen 81 ETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDYDDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFE-NDKKKNG 159 (531)
T ss_dssp EEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEESSSEEEEEEEEESS-SCCCCS-SSTT--S
T ss_pred cceeecccccccCcccccchhccchHHHHHHHHHhhhcccCchhheeccccccceeeEEEEeCCCCchhhhh-hhhcccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987 3356789
Q ss_pred eEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHH
Q 004236 381 IRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKF 460 (766)
Q Consensus 381 ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e~Y~kF 460 (766)
|+||||||||||+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+|+ +|+++|.+|
T Consensus 160 ikLY~rrVfI~d~~~-~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~--~d~e~y~~f 236 (531)
T PF00183_consen 160 IKLYVRRVFITDNFE-ELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLA--KDREKYEKF 236 (531)
T ss_dssp EEEEETTEEEESSCG-GSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHH
T ss_pred ceeeeecccccchhh-cccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999 689999999
Q ss_pred HHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHhhcCce
Q 004236 461 WENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIE 540 (766)
Q Consensus 461 ~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~~kG~E 540 (766)
|++||.+||+||++|..||++|++||||+||+++++++||++|++|||++|+.|||++|+|++++++|||+|+|+++|||
T Consensus 237 ~~~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~E 316 (531)
T PF00183_consen 237 WKEFGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYE 316 (531)
T ss_dssp HHHHHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--
T ss_pred HHHHhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhhCce
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred EEecCCcchHHHHHHHhhccCcceeeccccccCCCCchhHhH--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCE
Q 004236 541 VLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPC 618 (766)
Q Consensus 541 VL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~eee~~--e~~~~~f~~L~~~lK~~L~~kV~~V~vS~RL~~sP~ 618 (766)
||||++|||++||++|.+|+|++|++|++++++|++.++++. ++.+++|++|++|+|++||++|.+|++|.||++|||
T Consensus 317 VL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~~~k~~L~~kV~~V~vS~RL~~sPa 396 (531)
T PF00183_consen 317 VLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTEWLKELLGDKVEKVKVSNRLVDSPA 396 (531)
T ss_dssp EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEE-SSSSSSSE
T ss_pred EEEeCCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHhhhhhhhheecccccccCCcc
Confidence 999999999999999999999999999999999987665533 567789999999999999999999999999999999
Q ss_pred EEEeCCCCccHHHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHhhhcCCCchHHHHHHHHHhHHHHHhCCCC
Q 004236 619 VLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFT 698 (766)
Q Consensus 619 ~lv~se~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~~~~~~~lv~lLyd~AlL~sG~~ 698 (766)
|||++++|||++|+|||+||+++++.+..+|.++++|||||+||||++|++++..+++++.++++|+||||+|+|++||+
T Consensus 397 ~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~ 476 (531)
T PF00183_consen 397 VLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEKDEDDELAKDLAEQLYDTALLASGFE 476 (531)
T ss_dssp EEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS
T ss_pred eeecccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCC
Confidence 99999999999999999999988776667788999999999999999999998888878889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCC
Q 004236 699 PDSPADLGNKIYEMMAMALGGRWGRS 724 (766)
Q Consensus 699 ledp~~f~~ri~~Ll~~~L~~~~~~~ 724 (766)
++||+.|++|+++||.++|| ++.+
T Consensus 477 l~dp~~F~~Ri~~lL~~~l~--~~~~ 500 (531)
T PF00183_consen 477 LEDPAAFAKRINKLLEKSLG--VDPD 500 (531)
T ss_dssp -SSHHHHHHHHHHHHHHTTC----ST
T ss_pred cccHHHHHHHHHHHHHHhcC--CCcC
Confidence 99999999999999999999 6655
No 8
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=2.1e-129 Score=1120.31 Aligned_cols=552 Identities=24% Similarity=0.323 Sum_probs=483.9
Q ss_pred ccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEe-cCCCcEEEEEeCCCC
Q 004236 82 KFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP-DPENGTITITDTGIG 160 (766)
Q Consensus 82 ~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DnGiG 160 (766)
.++||+|+++||++|+++||+|+++|||||||||+|||+++|+.. ...++.|+|.+ |.++++|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~--------~~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD--------PTAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC--------CCCCceEEEEEccCCCcEEEEEeCCCC
Confidence 489999999999999999999999999999999999999988642 23457888888 888899999999999
Q ss_pred CCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE---------------ecC------
Q 004236 161 MTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE---------------ETD------ 219 (766)
Q Consensus 161 Mt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve---------------s~~------ 219 (766)
||++++.++|++||+||++.|. +. ..+.++||||||||||||||||+|+ +.+
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~-----~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i 146 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LG-----FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSV 146 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hc-----ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEE
Confidence 9999999999999999998763 21 1345799999999999999999996 111
Q ss_pred ---CCcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCCCCCCCCccccccccc
Q 004236 220 ---PEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKK 296 (766)
Q Consensus 220 ---~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 296 (766)
+.+..++||+|+||++++.. +|+++++|+++|++||.||+|||+++++
T Consensus 147 ~~~~~~~~~~GT~I~L~l~~d~~-~~~~~~~i~~li~~ys~~i~~pI~l~~~---------------------------- 197 (601)
T PRK14083 147 RKLETERAEPGTTVYLRPRPDAE-EWLERETVEELAKKYGSLLPVPIRVEGE---------------------------- 197 (601)
T ss_pred EeCCCCCCCCCCEEEEEecCchh-hhccHHHHHHHHHHHhccCCCCcccCCc----------------------------
Confidence 12456899999999999988 9999999999999999999999999642
Q ss_pred cccccccccceecccCCCCcccCCCCCC--HHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEE-eeCCCCCCcccc
Q 004236 297 TTKTEKYWDWELANETKPIWMRNPKEIE--KDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLY-IPGMGPLNNEEI 373 (766)
Q Consensus 297 k~~~~~~~~~e~iN~~~piW~r~~~evt--~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~lly-iP~~~p~~~~~~ 373 (766)
.++||+++|||+|++++|| ++||.+|||.+++ ++||+|+|+++||+.. +|+|| ||+.+|++
T Consensus 198 ---------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~--~~Pl~~ih~~~e~~~~-~~~Ly~iP~~~~~~---- 261 (601)
T PRK14083 198 ---------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG--FTPLDVIPLDVPSGGL-EGVAYVLPYAVSPA---- 261 (601)
T ss_pred ---------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC--CCchheeeecccchhh-eEEEEecCCCCCcc----
Confidence 1689999999999999999 9999999999998 6999999999999875 78887 69999874
Q ss_pred ccccccCeEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccC
Q 004236 374 MNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSEN 453 (766)
Q Consensus 374 ~~~~~~~ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d 453 (766)
.+++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|+++++||+.|++||+++|.++|+ +|
T Consensus 262 ---~~~~v~LY~~rVfI~d~~~-~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~la~-~d 336 (601)
T PRK14083 262 ---ARRKHRVYLKRMLLSEEAE-NLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKWLIGLAT-TD 336 (601)
T ss_pred ---ccCceEEEeeeeEeecchh-hhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHh-hC
Confidence 2579999999999999999 999999999999999999999999999999999999999999999999999997 89
Q ss_pred HHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecC-CHHHHhcCcchH
Q 004236 454 KEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATD-SLKSAKSAPFLE 532 (766)
Q Consensus 454 ~e~Y~kF~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~-s~~~~~~SP~lE 532 (766)
|++|++||++||.+||+|+++|.+|+++|++||||+||+ +.+||+||++|| +.|||++|. +..+++ +
T Consensus 337 ~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~---~~~sL~eY~~r~----~~IyY~~~~~~~~~~~-----~ 404 (601)
T PRK14083 337 PERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTD---GRMTLAEIRRRH----GVIRYTSSVDEFRQLA-----P 404 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCC---CCcCHHHHHHhC----CeEEEEcCHHHHHHHH-----H
Confidence 999999999999999999999999999999999999997 569999999996 489999996 666665 6
Q ss_pred HHhhcCceEEecCCcchHHHHHHHhh-ccCcceeeccccccC--CCCchhHhHHhhHHHHHHHHHHHHHHhCCc-eeEEE
Q 004236 533 KLVQKDIEVLYLIEPIDEVAIQNLQT-FNEKKFVDISKEDLE--LGDEDEVKERETKQEFNLLCDWIKQQLGDK-VAKVQ 608 (766)
Q Consensus 533 ~~~~kG~EVL~l~dpiDE~~lq~L~e-y~gk~f~~V~ke~l~--l~~~eee~~e~~~~~f~~L~~~lK~~L~~k-V~~V~ 608 (766)
.|+++|+|||||++||||+++++|.+ |+|++|++|+++++. ++..+ ...++++++|++|++++|+++ |+.|+
T Consensus 405 ~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~L~~~~~~v~~ 480 (601)
T PRK14083 405 IARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDRLEPLT----PEEELALRPFLAEAREVLAPFGCDVVI 480 (601)
T ss_pred HHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhhccccc----hhhHHHHHHHHHHHHHHhCccceEEEE
Confidence 99999999999999999999999998 999999999998773 43322 123567999999999999987 45458
Q ss_pred EeecCCCCCEEEEeCCCCccHHHHHHHHHH-hcCCCCc--------cccccCceeEEECCCChHHHHHHHhhhcCCCchH
Q 004236 609 VSKRLSSSPCVLVSGKFGWSANMERLMKAQ-ALGDTSS--------LEFMRGRRILEINPDHPIVKDLNAACKNAPDSTD 679 (766)
Q Consensus 609 vS~RL~~sP~~lv~se~g~s~~Merimkaq-~~~d~~~--------~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~~~~ 679 (766)
+|+||+++|||+|+++++ +|+++|++. ++.++.+ ..+..++++|||||+||||++|++. .+.+.
T Consensus 481 ~s~rl~~~Pa~~v~~e~~---~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~~----~d~~~ 553 (601)
T PRK14083 481 RHFEPADLPALYLHDRAA---QHSREREEAVEEADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLATL----GDPKL 553 (601)
T ss_pred EcCCCCCCCEEEEeCchh---HHHHHHHhhhhhcccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHhc----cChHH
Confidence 899999999999998843 666666532 1111111 1233578999999999999999875 34567
Q ss_pred HHHHHHHHhHHHHHhCCCCCC--CHHHHHHHHHHHHHHHhCCCC
Q 004236 680 AKRAVDLLYDTALISSGFTPD--SPADLGNKIYEMMAMALGGRW 721 (766)
Q Consensus 680 ~~~lv~lLyd~AlL~sG~~le--dp~~f~~ri~~Ll~~~L~~~~ 721 (766)
+++++++||+||+|++|++++ +|+.|+.++++||.++|+.++
T Consensus 554 ~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~~~ 597 (601)
T PRK14083 554 LSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELALDADI 597 (601)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999897 999999999999999998433
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.39 E-value=3.1e-13 Score=129.81 Aligned_cols=87 Identities=37% Similarity=0.526 Sum_probs=66.1
Q ss_pred CCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEec-CCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcH
Q 004236 101 YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVDCLGTIAQSGTS 179 (766)
Q Consensus 101 Ys~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~ 179 (766)
|++ ..+|+|||+||.||.... +.|.|..+ .....|.|.|||.||+.++|.. +++++.|.+.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~~----------------I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGATN----------------IKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHHH----------------EEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCCE----------------EEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 666 889999999999998542 44555544 2458999999999999999999 7789988765
Q ss_pred HHHHHhhhcccCCCCCCcccccccc-eeeeeeecceeE
Q 004236 180 KFLKALKENNDLGADNGLIGQFGVG-FYSAFLVAQKVE 216 (766)
Q Consensus 180 ~f~~~~~~~~~~~~~~~~IGqFGIG-f~S~Fmvad~Ve 216 (766)
.. + +...+|+||+| .+|+|++++.++
T Consensus 63 ~~--~---------~~~~~G~~G~G~k~A~~~~~~~~~ 89 (137)
T PF13589_consen 63 SE--K---------DRQSIGRFGIGLKLAIFSLGDRVE 89 (137)
T ss_dssp HH--H---------HGGGGGGGTSGCGGGGGGTEEEEE
T ss_pred ch--h---------hhhcCCCcceEHHHHHHHhcCEEE
Confidence 21 1 23569999999 889999999997
No 10
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.96 E-value=1.5e-09 Score=119.86 Aligned_cols=90 Identities=22% Similarity=0.403 Sum_probs=70.0
Q ss_pred CCCc----hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEe-cCCCcEEEEEeCCCCCCHHHHHHhhhhhhc
Q 004236 101 YSHK----EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP-DPENGTITITDTGIGMTKEELVDCLGTIAQ 175 (766)
Q Consensus 101 Ys~~----~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DnGiGMt~~el~~~L~tIa~ 175 (766)
|+++ -..+||||-||.|||+.... .+++.|+|.. +.+-.+++|+|||+|++.+.+-+.||++..
T Consensus 30 f~~p~RsL~~tv~ElV~NSLDA~eeaGI-----------LPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~Ly 98 (538)
T COG1389 30 FDGPIRSLTTTVHELVTNSLDACEEAGI-----------LPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLY 98 (538)
T ss_pred CCCchhHHHHHHHHHHhcchhhHHhcCC-----------CCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhc
Confidence 5555 36899999999999986543 3566777765 355678999999999999999999999988
Q ss_pred cCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecc
Q 004236 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (766)
Q Consensus 176 Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad 213 (766)
+++-. . ..+..||+|||.-.|-|.|.
T Consensus 99 gSKfh--~----------~~QsRGqqGiGis~avLysQ 124 (538)
T COG1389 99 GSKFH--R----------NIQSRGQQGIGISAAVLYSQ 124 (538)
T ss_pred cchhh--h----------hhhccccccccHHHHHHHHH
Confidence 76531 1 22457999999888777765
No 11
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.74 E-value=3.1e-08 Score=107.79 Aligned_cols=145 Identities=21% Similarity=0.232 Sum_probs=92.0
Q ss_pred HHHHH-HcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCc-EEEEEeCCCCCCHHHHHHhh
Q 004236 93 MDLIV-HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENG-TITITDTGIGMTKEELVDCL 170 (766)
Q Consensus 93 l~ll~-~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~l~I~DnGiGMt~~el~~~L 170 (766)
...|. .....++...|+|||+||.||.. . .|.|.+..+.. .|+|.|||.||+.+++...+
T Consensus 11 ~~~i~s~~~i~~~~~~l~eLi~Na~dA~a----------------~--~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~ 72 (312)
T TIGR00585 11 VNKIAAGEVIERPASVVKELVENSLDAGA----------------T--RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLAC 72 (312)
T ss_pred HHHHhCcCchhhHHHHHHHHHHHHHHCCC----------------C--EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHh
Confidence 33444 45567888999999999999851 1 34444433333 59999999999999987643
Q ss_pred hhhhccCcH-HHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e---c-----------C------CCcCCCCc
Q 004236 171 GTIAQSGTS-KFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E---T-----------D------PEKLLKRG 227 (766)
Q Consensus 171 ~tIa~Sg~~-~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s---~-----------~------~~~~~~~G 227 (766)
.-..+++. .+- . .......|.+|.|++|...+| +|+ + . + .....++|
T Consensus 73 -~~~~tsk~~~~~-~-------~~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G 142 (312)
T TIGR00585 73 -ERHATSKIQSFE-D-------LERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGGMIEEIKPAPRPVG 142 (312)
T ss_pred -hCCCcCCCCChh-H-------hhcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCCcCcccccccCCCc
Confidence 33333221 110 0 112356899999999999999 575 1 1 1 01123699
Q ss_pred eEEEEE-ec---CCCccccc-----chHHHHHHHHhhC---CCcccceeec
Q 004236 228 TQITLY-LK---EDDKYEFS-----EPTRIQGLVKNYS---QFVSFPIYTW 266 (766)
Q Consensus 228 T~I~L~-Lk---~~~~~e~~-----~~~~i~~li~~ys---~fi~~pI~~~ 266 (766)
|+|++. |- +... .|+ +-..++.++.+|+ ..|.|.+...
T Consensus 143 TtV~v~~lf~n~p~r~-~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~ 192 (312)
T TIGR00585 143 TTVEVRDLFYNLPVRR-KFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHD 192 (312)
T ss_pred cEEEEchhhccCchhh-hhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 999997 11 1111 122 2357888999998 5667777764
No 12
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.59 E-value=1.4e-07 Score=108.76 Aligned_cols=127 Identities=27% Similarity=0.329 Sum_probs=84.0
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEec---CCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHH
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD---PENGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f 181 (766)
...|+|||+||.||+..... .+.+.|.+... .+...|+|+|||+||+.+++...|+..-.+++ |
T Consensus 38 ~qVLkNLIeNAIDa~~~~gi-----------lp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK--~ 104 (535)
T PRK04184 38 YTTVKELVDNSLDACEEAGI-----------LPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSK--F 104 (535)
T ss_pred HHHHHHHHHHHHHHhhhcCC-----------CceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccc--c
Confidence 46789999999999963210 12345555542 22357899999999999999987776533222 1
Q ss_pred HHHhhhcccCCCCCCcccccccceeeeeeecce-------eEec--------------------C---C----CcCCCCc
Q 004236 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQK-------VEET--------------------D---P----EKLLKRG 227 (766)
Q Consensus 182 ~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~-------Ves~--------------------~---~----~~~~~~G 227 (766)
. ......|++|+|+.++.+++.. |+|. + . .....+|
T Consensus 105 ----~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~G 174 (535)
T PRK04184 105 ----H------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHG 174 (535)
T ss_pred ----c------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCC
Confidence 0 0023569999999999888762 3210 0 0 0123589
Q ss_pred eEEEEEecCCCcccccchHHHHHHHHhhCC
Q 004236 228 TQITLYLKEDDKYEFSEPTRIQGLVKNYSQ 257 (766)
Q Consensus 228 T~I~L~Lk~~~~~e~~~~~~i~~li~~ys~ 257 (766)
|+|.+.++.+.. ....+|.++|++++-
T Consensus 175 T~V~V~l~~~~~---~~~~~I~e~i~r~Al 201 (535)
T PRK04184 175 TRVELEIEGDWY---RAKQRIYEYLKRTAI 201 (535)
T ss_pred EEEEEEECCcCh---hhHHHHHHHHHHHHH
Confidence 999999876543 226778888888874
No 13
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.47 E-value=1.5e-07 Score=85.82 Aligned_cols=102 Identities=27% Similarity=0.392 Sum_probs=73.2
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..|.|||+||+++... ...+.|.+..+.+.-.|+|.|||.||+.+++...+.....+
T Consensus 8 ~il~~ll~Na~~~~~~--------------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~--------- 64 (111)
T PF02518_consen 8 QILSELLDNAIKHSPE--------------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTS--------- 64 (111)
T ss_dssp HHHHHHHHHHHHHHHH--------------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHS---------
T ss_pred HHHHHHHHHHHHHhcC--------------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhcccc---------
Confidence 5789999999999853 13456666666667889999999999999998755332211
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeEe-cCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVEE-TDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves-~~~~~~~~~GT~I~L~Lk~ 236 (766)
..+....+++|+|++.|..+++...- ..-......||+|++++..
T Consensus 65 ------~~~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 65 ------DKSETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp ------SSSSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEEEEEG
T ss_pred ------cccccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 11234567799999999999997741 0011223899999999864
No 14
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.34 E-value=1.7e-06 Score=99.00 Aligned_cols=127 Identities=23% Similarity=0.263 Sum_probs=81.5
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~ 184 (766)
..++|||.||.||+.... ..+.+.|.+..... ...|+|.|||.||+.+++...++....+++. .
T Consensus 31 ~VlkELVeNAIDA~~~~g-----------~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~--~-- 95 (488)
T TIGR01052 31 TVIHELVTNSLDACEEAG-----------ILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKF--H-- 95 (488)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcc--c--
Confidence 578999999999985311 01233444433222 2479999999999999999887775443331 0
Q ss_pred hhhcccCCCCCCcccccccceeeeeeecc-------eeEe--------------------cC------CCcCC-CCceEE
Q 004236 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQ-------KVEE--------------------TD------PEKLL-KRGTQI 230 (766)
Q Consensus 185 ~~~~~~~~~~~~~IGqFGIGf~S~Fmvad-------~Ves--------------------~~------~~~~~-~~GT~I 230 (766)
.....-|++|+|+.++.+++. .|.+ .+ +.... .+||+|
T Consensus 96 --------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~~~~~GT~V 167 (488)
T TIGR01052 96 --------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWNKPGWRGTRI 167 (488)
T ss_pred --------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecCCCCCCceEE
Confidence 112345899999999999887 2320 01 01111 269999
Q ss_pred EEEecCCCcccccchHHHHHHHHhhCC
Q 004236 231 TLYLKEDDKYEFSEPTRIQGLVKNYSQ 257 (766)
Q Consensus 231 ~L~Lk~~~~~e~~~~~~i~~li~~ys~ 257 (766)
++....... . ....+|.+++++++=
T Consensus 168 ~v~f~~~~~-r-~~k~~i~e~l~~~Al 192 (488)
T TIGR01052 168 ELEFKGVSY-R-RSKQGVYEYLRRTAV 192 (488)
T ss_pred EEEECCcee-e-ccHHHHHHHHHHHHh
Confidence 999655332 2 135788888888874
No 15
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=98.28 E-value=7.4e-06 Score=97.20 Aligned_cols=138 Identities=24% Similarity=0.268 Sum_probs=82.5
Q ss_pred HHHHH-HcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHhh
Q 004236 93 MDLIV-HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCL 170 (766)
Q Consensus 93 l~ll~-~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~L 170 (766)
...|. ...-.++...++|||.||.||.. . .|+|.+..+ ...|+|.|||.||+.+++...+
T Consensus 11 ~~~IaAgevI~~~~svvkElveNsiDAga----------------t--~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~ 72 (617)
T PRK00095 11 ANQIAAGEVVERPASVVKELVENALDAGA----------------T--RIDIEIEEGGLKLIRVRDNGCGISKEDLALAL 72 (617)
T ss_pred HHHhcCcCcccCHHHHHHHHHHHHHhCCC----------------C--EEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHh
Confidence 33343 45556788999999999999851 2 355555333 3579999999999999998754
Q ss_pred hhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e--------------cCC---C--cCCCCceE
Q 004236 171 GTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E--------------TDP---E--KLLKRGTQ 229 (766)
Q Consensus 171 ~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s--------------~~~---~--~~~~~GT~ 229 (766)
..-+.|.-..+ +.+ ....-.|..|.|+.|.-.|+ +++ + .|. . ....+||+
T Consensus 73 ~~~~tsKi~~~-~dl-------~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~~~~~~GT~ 143 (617)
T PRK00095 73 ARHATSKIASL-DDL-------EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKPAAHPVGTT 143 (617)
T ss_pred hccCCCCCCCh-hHh-------hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceecccCCCCCE
Confidence 42222211100 011 01235688898888877776 454 0 110 0 11368999
Q ss_pred EEEE-e---cCCCccccc-----chHHHHHHHHhhCCC
Q 004236 230 ITLY-L---KEDDKYEFS-----EPTRIQGLVKNYSQF 258 (766)
Q Consensus 230 I~L~-L---k~~~~~e~~-----~~~~i~~li~~ys~f 258 (766)
|++. | -+... .|+ +-..|+++|++|+-.
T Consensus 144 V~v~~LF~n~P~Rr-kflk~~~~e~~~i~~~v~~~Al~ 180 (617)
T PRK00095 144 IEVRDLFFNTPARR-KFLKSEKTELGHIDDVVNRLALA 180 (617)
T ss_pred EEechhhccCcHHH-HhccCcHHHHHHHHHHHHHHhhc
Confidence 9985 1 11112 333 234678888888743
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.17 E-value=5.1e-06 Score=98.45 Aligned_cols=125 Identities=26% Similarity=0.390 Sum_probs=81.3
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..++|||.||.||+..- +..+.+.|.|........|+|.|||.||+.+++...|...+.+++ |.
T Consensus 49 tVLkNLIeNALDAs~~~-----------gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f~--- 112 (795)
T PRK14868 49 TAVKEAVDNALDATEEA-----------GILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--FH--- 112 (795)
T ss_pred HHHHHHHHHHHHhCccc-----------CCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--cc---
Confidence 46789999999998420 001234444443333347999999999999999998877665433 11
Q ss_pred hhcccCCCCCCcccccccceeeeeeecc-------eeEec----------------CC---C--------cCCCCceEEE
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ-------KVEET----------------DP---E--------KLLKRGTQIT 231 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad-------~Ves~----------------~~---~--------~~~~~GT~I~ 231 (766)
....--|+.|+|+-++.+++. +|+|. +. . ....+||+|+
T Consensus 113 -------~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~Ie 185 (795)
T PRK14868 113 -------AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIE 185 (795)
T ss_pred -------ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEE
Confidence 011235889999999888887 34310 10 0 1235899999
Q ss_pred EEecCCCcccccchHHHHHHHHhhCC
Q 004236 232 LYLKEDDKYEFSEPTRIQGLVKNYSQ 257 (766)
Q Consensus 232 L~Lk~~~~~e~~~~~~i~~li~~ys~ 257 (766)
+.|.-+ |.-..+|.++|++++-
T Consensus 186 V~Lf~N----~pAR~kI~eyl~r~Al 207 (795)
T PRK14868 186 LEMEAN----MRARQQLHDYIKHTAV 207 (795)
T ss_pred EEEEcc----CchhhhHHHHHHHHHh
Confidence 998653 3346678888888774
No 17
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=97.66 E-value=9.6e-05 Score=87.43 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=75.7
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~ 184 (766)
..++|||.||.||+.... ..+.+.|.|..... .-.|+|.|||.||+.+++...|+..-. |++ |..
T Consensus 39 ~VVkELVeNAIDA~~~~g-----------~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~a-tSK-~~~- 104 (659)
T PRK14867 39 TIIHELVTNSLDACEEAE-----------ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLA-GSK-MHR- 104 (659)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccc-cCc-ccc-
Confidence 568999999999995211 12234455543322 235999999999999999987766432 221 100
Q ss_pred hhhcccCCCCCCcccccccceeeeeeecce-------eEe------------------c-C---CC---cCCCCceEEEE
Q 004236 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQK-------VEE------------------T-D---PE---KLLKRGTQITL 232 (766)
Q Consensus 185 ~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~-------Ves------------------~-~---~~---~~~~~GT~I~L 232 (766)
-...-|++|+|+.++-++++. +.| . + .. ....+||+|++
T Consensus 105 ---------~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~ 175 (659)
T PRK14867 105 ---------LIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTRVEG 175 (659)
T ss_pred ---------eeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeecccccCCCCCCCcEEEE
Confidence 013457888888777655553 210 0 1 11 12269999998
Q ss_pred EecCCCcccccc-hHHHHHHHHhhCC
Q 004236 233 YLKEDDKYEFSE-PTRIQGLVKNYSQ 257 (766)
Q Consensus 233 ~Lk~~~~~e~~~-~~~i~~li~~ys~ 257 (766)
.+++-. |-. +.++.++|++++-
T Consensus 176 ~V~dLF---ynR~E~~i~e~l~r~AL 198 (659)
T PRK14867 176 EFKEVT---YNRREQGPFEYLRRISL 198 (659)
T ss_pred EEeece---echhhHHHHHHHHHHHH
Confidence 776521 211 2347788887763
No 18
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=97.55 E-value=9.6e-05 Score=87.93 Aligned_cols=128 Identities=18% Similarity=0.260 Sum_probs=81.7
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH--------hhhhhhcc
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--------CLGTIAQS 176 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~--------~L~tIa~S 176 (766)
...++|||-||.|++.. ..--.|.|.++.+ +.|+|.|||.||+.+.... .|+++-.+
T Consensus 39 ~~lv~EivdNaiDe~~a--------------g~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhag 103 (631)
T PRK05559 39 HHLVQEVIDNSVDEALA--------------GHGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAG 103 (631)
T ss_pred hhhhhhhhccccchhhc--------------CCCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeecccc
Confidence 46789999999999831 1223566666654 5999999999999988776 55554333
Q ss_pred CcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC--------CCcC--CCCceEEEE
Q 004236 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD--------PEKL--LKRGTQITL 232 (766)
Q Consensus 177 g~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~--------~~~~--~~~GT~I~L 232 (766)
|+ | . .......-|..|+|.-++=.++.+++ +.+ .+.. ..+||+|+.
T Consensus 104 sK--f----~----~~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~~~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f 173 (631)
T PRK05559 104 GK--F----S----NKAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGKVYRQRFEGGDPVGPLEVVGTAGKRKTGTRVRF 173 (631)
T ss_pred Cc--c----C----CccccccCcccccchhhhhhheeeEEEEEEeCCeEEEEEEECCcCccCccccccccCCCCCcEEEE
Confidence 32 2 1 11112346888999988888877664 111 1111 468999999
Q ss_pred EecCCC-cccccchHHHHHHHHhhCC
Q 004236 233 YLKEDD-KYEFSEPTRIQGLVKNYSQ 257 (766)
Q Consensus 233 ~Lk~~~-~~e~~~~~~i~~li~~ys~ 257 (766)
.....- ...-++...|.+.++.++-
T Consensus 174 ~PD~~iF~~~~~~~~~i~~~l~~~A~ 199 (631)
T PRK05559 174 WPDPKIFDSPKFSPERLKERLRSKAF 199 (631)
T ss_pred EECHHHcCCcccCHHHHHHHHHHHHh
Confidence 653311 0012456678888888763
No 19
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.35 E-value=0.00036 Score=61.03 Aligned_cols=101 Identities=23% Similarity=0.314 Sum_probs=65.4
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..++|++.||.++... ...+.|.+..+.....+.|.|+|.||+.+.+...+.....+ .
T Consensus 8 ~~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~-~------- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRT-D------- 65 (111)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEEC-C-------
Confidence 3567888887776521 23456666665555678999999999998887755332211 0
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
......+++|+|++.+-.+++... ..........||++++.+.
T Consensus 66 -------~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~ 109 (111)
T smart00387 66 -------GRSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLP 109 (111)
T ss_pred -------CCCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEEEee
Confidence 122345778999999888888763 0001112367999998875
No 20
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.00037 Score=83.08 Aligned_cols=135 Identities=25% Similarity=0.273 Sum_probs=81.1
Q ss_pred CCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCc-EEEEEeCCCCCCHHHHHHhhhhhhccCcH
Q 004236 101 YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENG-TITITDTGIGMTKEELVDCLGTIAQSGTS 179 (766)
Q Consensus 101 Ys~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~l~I~DnGiGMt~~el~~~L~tIa~Sg~~ 179 (766)
=..|...+||||.||.||-. -+|+|.++..+. .|.|+|||.||+++||.-.+..=|-|--.
T Consensus 21 IerPaSVVKELVENSlDAGA------------------t~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~ 82 (638)
T COG0323 21 IERPASVVKELVENSLDAGA------------------TRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIA 82 (638)
T ss_pred eecHHHHHHHHHhcccccCC------------------CEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccccCC
Confidence 34678899999999999962 367887766664 49999999999999998665443433211
Q ss_pred HHHHHhhhcccCCCCCCcccccccceeeeeeecc-eeEe--------------cC--C---C-cCCCCceEEEEE-----
Q 004236 180 KFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQ-KVEE--------------TD--P---E-KLLKRGTQITLY----- 233 (766)
Q Consensus 180 ~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad-~Ves--------------~~--~---~-~~~~~GT~I~L~----- 233 (766)
.+-+ |. ...-.|--|=.+.|.--||. .|.| .+ . . -..+.||+|.+.
T Consensus 83 ~~~D-L~-------~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~a~~~GTtVeV~dLF~N 154 (638)
T COG0323 83 SLED-LF-------RIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYN 154 (638)
T ss_pred chhH-HH-------HhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccccccCCCCCCCCEEEehHhhcc
Confidence 1100 00 12345555655666555554 1210 01 0 1 112459999964
Q ss_pred -------ecCCCcccccchHHHHHHHHhhCCC---cccceee
Q 004236 234 -------LKEDDKYEFSEPTRIQGLVKNYSQF---VSFPIYT 265 (766)
Q Consensus 234 -------Lk~~~~~e~~~~~~i~~li~~ys~f---i~~pI~~ 265 (766)
+|. +..+-..|..+|++|+-. |.|-...
T Consensus 155 tPaRrKflks----~~~E~~~i~~vv~r~ALahp~I~F~l~~ 192 (638)
T COG0323 155 TPARRKFLKS----EKTEFGHITELINRYALAHPDISFSLSH 192 (638)
T ss_pred ChHHHHhhcc----cHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 222 233445678889999843 4444443
No 21
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=96.99 E-value=0.0016 Score=55.84 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=62.8
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..++|||.||.++... ....+.|.+..+...-.+.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4689999999998732 123455555554444568999999999999987755432110
Q ss_pred hhcccCCCCCCcccccccceeeeeeecc----eeEecCCCcCCCCceEEEEEe
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ----KVEETDPEKLLKRGTQITLYL 234 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad----~Ves~~~~~~~~~GT~I~L~L 234 (766)
......+.+|+|++.+-.+++ .++.. .....||.+++.+
T Consensus 61 -------~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~---~~~~~g~~~~~~~ 103 (103)
T cd00075 61 -------SRSRKGGGTGLGLSIVKKLVELHGGRIEVE---SEPGGGTTFTITL 103 (103)
T ss_pred -------CCCCCCCccccCHHHHHHHHHHcCCEEEEE---eCCCCcEEEEEEC
Confidence 111234678999999888888 44311 1123688887753
No 22
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.98 E-value=0.00071 Score=73.90 Aligned_cols=100 Identities=18% Similarity=0.302 Sum_probs=61.0
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..+..||+||..+. .....+.|.+..+.+.-.|+|+|||+||+.+++.+.+... . +
T Consensus 250 ~il~nLi~NA~k~~--------------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~---~------ 305 (356)
T PRK10755 250 LLLRNLVENAHRYS--------------PEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAF-V---R------ 305 (356)
T ss_pred HHHHHHHHHHHhhC--------------CCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCe-E---e------
Confidence 35778888875442 1134456666555556679999999999999987643211 1 0
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCC-CceEEEEEecCC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLK-RGTQITLYLKED 237 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~-~GT~I~L~Lk~~ 237 (766)
. + ..-|.+|+|++-|--+++..- +-.-....+ .||+|++.+...
T Consensus 306 -----~--~-~~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 306 -----M--D-SRYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred -----C--C-CCCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 0 0 112568999987766666541 000011224 799999998643
No 23
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.96 E-value=0.00082 Score=80.68 Aligned_cols=95 Identities=27% Similarity=0.397 Sum_probs=58.0
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.+.+||+||.++.. ....+.|++..+.+.-.|+|.|||.||+.+.+.+.+-.-..++
T Consensus 583 vl~nLl~NAik~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~--------- 639 (679)
T TIGR02916 583 VLGHLVQNALEATP--------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTT--------- 639 (679)
T ss_pred HHHHHHHHHHHhCC--------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCC---------
Confidence 56677777776641 1234555555544556789999999999998555442211110
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEe
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYL 234 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~L 234 (766)
+ . +..|+|.+.+--+++..- +-.-....+.||++++.|
T Consensus 640 -------~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~L 678 (679)
T TIGR02916 640 -------K-G--AGMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVL 678 (679)
T ss_pred -------C-C--CCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEe
Confidence 0 1 567999998876666542 000112236899999876
No 24
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=96.95 E-value=0.0005 Score=81.49 Aligned_cols=134 Identities=22% Similarity=0.231 Sum_probs=79.0
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH-------hhhhhhccCcH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD-------CLGTIAQSGTS 179 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~-------~L~tIa~Sg~~ 179 (766)
.++|||-||.||... ..--.|.|.++.+ +.|+|.|||.||+.+.... .+.++...|.+
T Consensus 5 ~v~ElvdNAiD~~~~--------------g~at~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k 69 (594)
T smart00433 5 LVDEIVDNAADEALA--------------GYMDTIKVTIDKD-NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK 69 (594)
T ss_pred EEeeehhcccchhcc--------------CCCCEEEEEEeCC-CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC
Confidence 468999999999732 1123577776655 4999999999999533211 12233333321
Q ss_pred HHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ec-C--------CCcCCCCceEEEEEecC
Q 004236 180 KFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ET-D--------PEKLLKRGTQITLYLKE 236 (766)
Q Consensus 180 ~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~-~--------~~~~~~~GT~I~L~Lk~ 236 (766)
| . .....-.-|.-|+|..|+-.++.+++ +. + .+.....||+|+. .+
T Consensus 70 -f----d----~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~~~~~~~~~~G~~~~~~~~~~~~~~~GT~V~F--~P 138 (594)
T smart00433 70 -F----D----DDAYKVSGGLHGVGASVVNALSTEFEVEVARDGKEYKQSFSNNGKPLSEPKIIGDTKKDGTKVTF--KP 138 (594)
T ss_pred -C----C----CCCccccCCcccchHHHHHHhcCceEEEEEeCCcEEEEEEeCCCeECccceecCCCCCCCcEEEE--EE
Confidence 1 1 11111246777999998888887664 11 1 1122368999995 45
Q ss_pred CCcccccc-----hHHHHHHHHhhCCCc-ccceeecc
Q 004236 237 DDKYEFSE-----PTRIQGLVKNYSQFV-SFPIYTWQ 267 (766)
Q Consensus 237 ~~~~e~~~-----~~~i~~li~~ys~fi-~~pI~~~~ 267 (766)
+.. -|.. ...|.+.++.++-.- ..-|.+++
T Consensus 139 d~~-~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l~d 174 (594)
T smart00433 139 DLE-IFGMTTDDDFELLKRRLRELAFLNKGVKITLND 174 (594)
T ss_pred CHH-HhCCcccchHHHHHHHHHHHHhcCCCcEEEEec
Confidence 554 5544 356777888875332 34444443
No 25
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.92 E-value=0.0011 Score=74.83 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=59.7
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.+..||.||..+. ...+.+.|.+..+.+.-.|+|.|||+||+.+++.+.+...-+.
T Consensus 356 vl~nll~NAi~~~--------------~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~---------- 411 (466)
T PRK10549 356 LFNNLLENSLRYT--------------DSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRT---------- 411 (466)
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccC----------
Confidence 4556666665552 1133455555555444568999999999999887654322111
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.+......|..|+|++-+--+++.-- +-.-....+.||++++.+.-
T Consensus 412 ----~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~ 458 (466)
T PRK10549 412 ----EGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPL 458 (466)
T ss_pred ----CCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccC
Confidence 01112345678999987665555431 00011234679999998853
No 26
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=96.91 E-value=0.0012 Score=78.55 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=81.5
Q ss_pred hhHHHHhHHhHHH-HHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH--------HHHhhhhhhc
Q 004236 105 EVFLRELVSNASD-ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIAQ 175 (766)
Q Consensus 105 ~vflRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~L~tIa~ 175 (766)
...+.|||-||.| |+. ..--.|.|.++.+ +.|+|.|||.||+.++ +.-.|+..-.
T Consensus 32 ~~lv~ElvdNsiDE~~a---------------g~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lha 95 (625)
T TIGR01055 32 NHLVQEVIDNSVDEALA---------------GFASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHA 95 (625)
T ss_pred ceeehhhhhcccchhhc---------------CCCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhcccc
Confidence 5689999999999 221 0112466666655 8999999999999888 5444433322
Q ss_pred cCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC----------CCcCCCCceEEE
Q 004236 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD----------PEKLLKRGTQIT 231 (766)
Q Consensus 176 Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~----------~~~~~~~GT~I~ 231 (766)
+|+ | . ...-...-|.-|+|.-|+=.++.+++ +.+ +.....+||+|+
T Consensus 96 gsK--~----~----~~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~ 165 (625)
T TIGR01055 96 GGK--F----S----NKNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKLYSIAFENGAKVTDLISAGTCGKRLTGTSVH 165 (625)
T ss_pred cCC--C----C----CCcceecCCCcchhHHHHHHhcCeEEEEEEECCeEEEEEEECCeEccccccccccCCCCCCeEEE
Confidence 222 1 1 11111345667999998888888664 111 111234999999
Q ss_pred EEecCCCc-ccccchHHHHHHHHhhCCCc-ccceeecc
Q 004236 232 LYLKEDDK-YEFSEPTRIQGLVKNYSQFV-SFPIYTWQ 267 (766)
Q Consensus 232 L~Lk~~~~-~e~~~~~~i~~li~~ys~fi-~~pI~~~~ 267 (766)
.......- ..-.+...|.+++++++-.. ..-|.+++
T Consensus 166 F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~d 203 (625)
T TIGR01055 166 FTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFED 203 (625)
T ss_pred EEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEee
Confidence 85443210 01134467888888875432 35555554
No 27
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=4e-05 Score=88.05 Aligned_cols=227 Identities=8% Similarity=-0.114 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchH
Q 004236 453 NKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLE 532 (766)
Q Consensus 453 d~e~Y~kF~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE 532 (766)
+...++.+|+.|...+..++.+.-.....-.... +...-.-....|.+++ .+.+++...++....+.-.+.+.....
T Consensus 375 e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~-~a~lLry~ss~s~~~~--~Sl~dYv~rm~~~qk~iyyi~~~s~~~ 451 (656)
T KOG0019|consen 375 DLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKE-IAKLLRYESSKSGEGA--TSLDDYVERMREGQKNIYYITAPNRQL 451 (656)
T ss_pred HHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhH-HHHHhhhhcccccccc--ccHHHHHHhhcccccceEEeccchhhh
Confidence 5668999999999999999988866655555444 2222222345777887 666788888999988887788888887
Q ss_pred HHhhcCceEEecCCcchHHHHHHHhhccCcceeeccccccCCCCchh-HhH--HhhHHHHHHHHHHHHHHhCCceeEEEE
Q 004236 533 KLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDE-VKE--RETKQEFNLLCDWIKQQLGDKVAKVQV 609 (766)
Q Consensus 533 ~~~~kG~EVL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~ee-e~~--e~~~~~f~~L~~~lK~~L~~kV~~V~v 609 (766)
+-.+-+||++..-++.+.||++.+.+|....++......+-....+. +.. ++.+.+.+...+-++ .| |+ .+
T Consensus 452 ~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe-~l-ck----~m 525 (656)
T KOG0019|consen 452 AESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFE-EL-CK----WM 525 (656)
T ss_pred hhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHH-HH-HH----HH
Confidence 88888999999999999999999999999999998888774332221 111 222222222222221 22 22 24
Q ss_pred eecCCCCCEEEEeCCCCccHHHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHhhhcCCCchHHHHHHHHHhH
Q 004236 610 SKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYD 689 (766)
Q Consensus 610 S~RL~~sP~~lv~se~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~~~~~~~lv~lLyd 689 (766)
+.+|.+ +|+-|+..+.++.++..|+..+....+.|...|.+++..+.|+-|-+.- .+.++-+++.+.++.+-.+.+.
T Consensus 526 K~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~--kk~lEINP~hpivk~L~~~~~~ 602 (656)
T KOG0019|consen 526 KEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA--KKHLEINPDHPLVKTLRQLRES 602 (656)
T ss_pred HHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc--cceeeeCCCChHHHHHHHHHhc
Confidence 578887 9999999999999999999887655677777899999999999998876 4456678889999988666554
Q ss_pred HH
Q 004236 690 TA 691 (766)
Q Consensus 690 ~A 691 (766)
..
T Consensus 603 dk 604 (656)
T KOG0019|consen 603 DK 604 (656)
T ss_pred Cc
Confidence 43
No 28
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=96.85 E-value=0.0018 Score=78.31 Aligned_cols=132 Identities=20% Similarity=0.310 Sum_probs=80.1
Q ss_pred hHHHHhHHhHHH-HHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH----------HHHHhhhhhh
Q 004236 106 VFLRELVSNASD-ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE----------ELVDCLGTIA 174 (766)
Q Consensus 106 vflRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~----------el~~~L~tIa 174 (766)
..++|+|-||.| |+. ..--.|+|+++.+ +.|+|+|||.||+.+ |++ |+ ..
T Consensus 40 hlv~EivdNaiDE~~A---------------G~a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt-~l 100 (756)
T PRK14939 40 HMVYEVVDNAIDEALA---------------GHCDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT-VL 100 (756)
T ss_pred hhhhHhhccccccccc---------------CCCCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee-ee
Confidence 578999999999 321 1123567776654 599999999999987 443 33 33
Q ss_pred ccCcHHHHHHhhhcccCCCCCC-cccccccceeeeeeecceeE--------------ecC--------CCcCCCCceEEE
Q 004236 175 QSGTSKFLKALKENNDLGADNG-LIGQFGVGFYSAFLVAQKVE--------------ETD--------PEKLLKRGTQIT 231 (766)
Q Consensus 175 ~Sg~~~f~~~~~~~~~~~~~~~-~IGqFGIGf~S~Fmvad~Ve--------------s~~--------~~~~~~~GT~I~ 231 (766)
.+|.+ | . +.... .-|.-|+|.-++=.++++++ +.+ -+....+||+|+
T Consensus 101 hAggK-f----d-----~~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk~~~q~f~~G~~~~~l~~~g~~~~~GT~V~ 170 (756)
T PRK14939 101 HAGGK-F----D-----QNSYKVSGGLHGVGVSVVNALSEWLELTIRRDGKIHEQEFEHGVPVAPLKVVGETDKTGTEVR 170 (756)
T ss_pred cccCC-C----C-----CCcccccCCccCccceEeehccCeEEEEEEeCCeEEEEEEecCccccCccccCCcCCCCcEEE
Confidence 44432 2 1 11112 34667999999988888775 111 111246899999
Q ss_pred EEecCCC-cccccchHHHHHHHHhhCCCc--ccceeecc
Q 004236 232 LYLKEDD-KYEFSEPTRIQGLVKNYSQFV--SFPIYTWQ 267 (766)
Q Consensus 232 L~Lk~~~-~~e~~~~~~i~~li~~ys~fi--~~pI~~~~ 267 (766)
......- ...-++...|.+.++.++ |+ ..-|.+.+
T Consensus 171 F~PD~~iF~~~~~~~~~i~~rl~elA-~lnpgl~i~l~d 208 (756)
T PRK14939 171 FWPSPEIFENTEFDYDILAKRLRELA-FLNSGVRIRLKD 208 (756)
T ss_pred EEECHHHcCCcccCHHHHHHHHHHHh-hcCCCCEEEEec
Confidence 8543321 001235567888888876 44 34555554
No 29
>PRK10604 sensor protein RstB; Provisional
Probab=96.77 E-value=0.0015 Score=73.95 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=60.6
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.+..||+||..+. ...+.|.+..+.+.-.|+|.|||.||+.+++.+-+....+..
T Consensus 323 vl~NLl~NAik~~----------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~--------- 377 (433)
T PRK10604 323 VLDNLLNNALRYA----------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD--------- 377 (433)
T ss_pred HHHHHHHHHHHhC----------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC---------
Confidence 4677777776542 234566666665556799999999999999876543322110
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.......|.+|+|++-+--+++..- +-.-....+.||++++.+--
T Consensus 378 -----~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~ 423 (433)
T PRK10604 378 -----PSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPV 423 (433)
T ss_pred -----CCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeC
Confidence 0111234678999986555554331 00011123679999999853
No 30
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.68 E-value=0.002 Score=72.56 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=61.2
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
-.+..||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+-..-+ ..
T Consensus 320 ~vl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~-~~------- 377 (430)
T PRK11006 320 SAISNLVYNAVNHTP--------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYR-VD------- 377 (430)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCccc-cc-------
Confidence 456788888877741 12334455544545567999999999999998764321110 00
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.......|..|+|++-|-.+++.-- +..-....+.||++++.|..
T Consensus 378 ------~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~ 423 (430)
T PRK11006 378 ------KARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPE 423 (430)
T ss_pred ------CCCCCCCCCCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEech
Confidence 0111234667999987776666431 00001123679999998853
No 31
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.67 E-value=0.0023 Score=71.87 Aligned_cols=99 Identities=23% Similarity=0.252 Sum_probs=58.9
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.+++||+||..+- ...+.|++..+.+.-.|+|.|||.||+.+++...+...-+ +.
T Consensus 357 ~l~nli~NA~~~~----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~-~~-------- 411 (461)
T PRK09470 357 ALENIVRNALRYS----------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYR-VD-------- 411 (461)
T ss_pred HHHHHHHHHHHhC----------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCcc-CC--------
Confidence 4778888877542 1245666666655567999999999999988764432111 00
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
......-|.+|+|++-+=-+++... +..-......||+|++++.
T Consensus 412 -----~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp 456 (461)
T PRK09470 412 -----EARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLP 456 (461)
T ss_pred -----cccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEee
Confidence 0111234678999876533333221 0000112357999999874
No 32
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.63 E-value=0.0026 Score=71.20 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=61.3
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHH
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~ 184 (766)
...|+.|+.||.++..... .....+.|.+..+.+.-.|+|.|||+||+.+...+.|-..-. +
T Consensus 389 ~~vl~Nl~~NAik~~~~~~----------~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~-~------- 450 (494)
T TIGR02938 389 RSLFKALVDNAIEAMNIKG----------WKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFT-T------- 450 (494)
T ss_pred HHHHHHHHHHHHHHhhccC----------CCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcc-c-------
Confidence 3478999999998874210 011223333333444567899999999999888765532211 0
Q ss_pred hhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEe
Q 004236 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYL 234 (766)
Q Consensus 185 ~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~L 234 (766)
.....+.-|+|++-|-.+++..- ...-....+.||++++.|
T Consensus 451 ---------~~~~~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~l 492 (494)
T TIGR02938 451 ---------KGGSRKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEF 492 (494)
T ss_pred ---------CCCCCCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEe
Confidence 01114557899987766666431 000011236799999987
No 33
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=96.51 E-value=0.0028 Score=76.09 Aligned_cols=135 Identities=18% Similarity=0.212 Sum_probs=78.8
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH-------HhhhhhhccCc
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSGT 178 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~L~tIa~Sg~ 178 (766)
..++|||-||.|-... ..--.|.|.++. ++.|+|.|||.||+.+--. ..+.++..+|.
T Consensus 33 ~vv~Elv~NaiDe~~a--------------g~a~~I~V~i~~-~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~ 97 (654)
T TIGR01059 33 HLVYEVVDNSIDEAMA--------------GYCDTINVTIND-DGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGG 97 (654)
T ss_pred hhhHHhhhcccccccc--------------CCCCEEEEEEeC-CCcEEEEEeCCCcCccccCcCCCCchHHheeeecccC
Confidence 5678999999994310 112356666664 3569999999999975210 11223333333
Q ss_pred HHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC--------CCcCCCCceEEEEEecC
Q 004236 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD--------PEKLLKRGTQITLYLKE 236 (766)
Q Consensus 179 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~--------~~~~~~~GT~I~L~Lk~ 236 (766)
+ | . .......-|.-|+|..|+=.++..++ +.+ .+.....||+|+.+..+
T Consensus 98 k-f----~----~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~~~~~~~~G~~~~~l~~~~~~~~~GT~V~F~pdp 168 (654)
T TIGR01059 98 K-F----D----KDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKIYRQEFERGIPLGPLEVVGETKKTGTTVRFWPDP 168 (654)
T ss_pred c-c----C----CCcceecCCccchhHHHHHHhcCeEEEEEEECCeEEEEEEeCCCcccCceeccCCCCCCcEEEEEECh
Confidence 2 2 1 11112346777999988888888664 111 11234689999955433
Q ss_pred CCcccc----cchHHHHHHHHhhCCCc-ccceeecc
Q 004236 237 DDKYEF----SEPTRIQGLVKNYSQFV-SFPIYTWQ 267 (766)
Q Consensus 237 ~~~~e~----~~~~~i~~li~~ys~fi-~~pI~~~~ 267 (766)
. -| ++...|.+.++.++-.. ..-|.++.
T Consensus 169 --~-~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~ 201 (654)
T TIGR01059 169 --E-IFETTEFDFDILAKRLRELAFLNSGVKISLED 201 (654)
T ss_pred --H-HhCCcccCHHHHHHHHHHhhccCCCeEEEEEe
Confidence 2 34 35677888888887332 23444443
No 34
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.48 E-value=0.0041 Score=69.77 Aligned_cols=101 Identities=22% Similarity=0.174 Sum_probs=58.9
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..+.+||.||..+. .+...+.|.+..+.+.-.|+|+|||.||+.+++...+. ...+..
T Consensus 371 ~vl~nli~Na~~~~--------------~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~-~~~~~~------- 428 (475)
T PRK11100 371 QALGNLLDNAIDFS--------------PEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFE-RFYSLP------- 428 (475)
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHH-HHccCC-------
Confidence 34677777777653 11234556655555556799999999999998876442 211110
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
.....-+..|+|++.|--++...- +-.-....+.||+|++.+.
T Consensus 429 -------~~~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp 472 (475)
T PRK11100 429 -------RPANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLP 472 (475)
T ss_pred -------CCCCCCCCcchhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEee
Confidence 001122456899988766665431 0000112357999999874
No 35
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.43 E-value=0.0033 Score=66.57 Aligned_cols=100 Identities=23% Similarity=0.331 Sum_probs=57.2
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.+.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+.+...+...-.. .
T Consensus 233 vl~nll~Nai~~~~--------------~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~-~-------- 289 (333)
T TIGR02966 233 AFSNLVSNAIKYTP--------------EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRV-D-------- 289 (333)
T ss_pred HHHHHHHHhheeCC--------------CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceec-C--------
Confidence 57778888765531 122344444444444568999999999999887644221110 0
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEe
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYL 234 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~L 234 (766)
. ......+..|+|++.|-.+++.-- +-.-....+.||++++.+
T Consensus 290 ----~-~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 290 ----K-SRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred ----c-ccccCCCCCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 0 011123456999998777766531 000011236899999875
No 36
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.42 E-value=0.0042 Score=71.26 Aligned_cols=100 Identities=20% Similarity=0.268 Sum_probs=61.4
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..+.+|+.||.+|+.. .....+.|++..+.+.-.|.|.|||.||+.+++.+.+.. +.|++
T Consensus 436 ~vl~nLl~NAi~~~~~------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~-~~~~~------- 495 (542)
T PRK11086 436 TILGNLIENALEAVGG------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDK-GYSTK------- 495 (542)
T ss_pred HHHHHHHHHHHHHhhc------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhC-CCccC-------
Confidence 3577999999998731 112334555555544457899999999999998765421 11110
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecCC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKED 237 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~~ 237 (766)
-+..|+|++-+-.+++.-- +-.-....+.||+++++|.-.
T Consensus 496 ------------~~g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~ 536 (542)
T PRK11086 496 ------------GSNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWD 536 (542)
T ss_pred ------------CCCCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCC
Confidence 1345899887666655431 000011237899999988643
No 37
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.41 E-value=0.004 Score=69.61 Aligned_cols=99 Identities=18% Similarity=0.266 Sum_probs=58.8
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.+.+||.||..+. .....+.|++..+.+.-.|+|.|||.||+.+.+.+.+-..-++..
T Consensus 357 ~~~nll~Nai~~~--------------~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~-------- 414 (457)
T TIGR01386 357 AISNLLSNALRHT--------------PDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP-------- 414 (457)
T ss_pred HHHHHHHHHHHcC--------------CCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc--------
Confidence 4667777766542 112345666665544457899999999999988764432211110
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEe
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYL 234 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~L 234 (766)
.....-+..|+|.+-+--+++..- +-.-.. .+.||+|+|.+
T Consensus 415 ------~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~ 456 (457)
T TIGR01386 415 ------ARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRF 456 (457)
T ss_pred ------ccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEec
Confidence 011234568999987766666542 100112 47899999876
No 38
>PRK10364 sensor protein ZraS; Provisional
Probab=96.35 E-value=0.0046 Score=70.17 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=59.1
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.+..||.||.+|+. ....+.|.+..+.+.-.|+|.|||.||+.+.+.+.+.. +.+.+
T Consensus 352 il~NLl~NA~k~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-~~~~k-------- 408 (457)
T PRK10364 352 VLLNLYLNAIQAIG--------------QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTP-YFTTK-------- 408 (457)
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCc-cccCC--------
Confidence 36677778887752 12345566655555567999999999999988764421 11110
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
-+..|+|++-+--+++..- +-.-....+.||++++.|-.
T Consensus 409 -----------~~g~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~ 448 (457)
T PRK10364 409 -----------AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPV 448 (457)
T ss_pred -----------CCCCcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecC
Confidence 1346899887666555441 00001123679999999864
No 39
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=96.33 E-value=0.0058 Score=73.09 Aligned_cols=135 Identities=22% Similarity=0.271 Sum_probs=79.3
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH-------HhhhhhhccCc
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSGT 178 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~L~tIa~Sg~ 178 (766)
..++|||-||.|-... ..--.|+|.++.+ +.|+|.|||.||+.+.-. ..+.++..+|.
T Consensus 40 ~~v~ElvdNaiDe~~a--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~ 104 (638)
T PRK05644 40 HLVYEIVDNSIDEALA--------------GYCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGG 104 (638)
T ss_pred hhhHHhhhcccccccC--------------CCCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeecccC
Confidence 4678999999995410 1123567766654 599999999999986211 11223333333
Q ss_pred HHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC----C----CcCCCCceEEEEEecC
Q 004236 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD----P----EKLLKRGTQITLYLKE 236 (766)
Q Consensus 179 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~----~----~~~~~~GT~I~L~Lk~ 236 (766)
+ | . .....-.-|..|+|.-|+=.++++++ +.+ + +.....||+|+. .+
T Consensus 105 k-f----d----~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~~~~~~~~~G~~~~~~~~~~~~~~~GT~I~F--~P 173 (638)
T PRK05644 105 K-F----G----GGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYYQEYERGVPVTPLEVIGETDETGTTVTF--KP 173 (638)
T ss_pred c-c----C----CCcccccCCccccchhhhhheeceEEEEEEeCCcEEEEEEECCeEccCccccCCcCCCCcEEEE--EE
Confidence 2 1 1 11111246777999999888888664 111 1 112468999996 44
Q ss_pred CCcccc----cchHHHHHHHHhhCCCc-ccceeecc
Q 004236 237 DDKYEF----SEPTRIQGLVKNYSQFV-SFPIYTWQ 267 (766)
Q Consensus 237 ~~~~e~----~~~~~i~~li~~ys~fi-~~pI~~~~ 267 (766)
+.. -| ++...|.+.++.++-.. ..-|.++.
T Consensus 174 d~~-~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~ 208 (638)
T PRK05644 174 DPE-IFETTEFDYDTLATRLRELAFLNKGLKITLTD 208 (638)
T ss_pred CHH-HcCCcccCHHHHHHHHHHHHhhCCCcEEEEEe
Confidence 433 33 35577888888886432 34444443
No 40
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.26 E-value=0.005 Score=71.23 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=59.0
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.+.-||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+.+++..-+.. +.+
T Consensus 382 vl~NLi~NAik~~~----------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~----f~~------- 434 (485)
T PRK10815 382 VMGNVLDNACKYCL----------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDR----GQR------- 434 (485)
T ss_pred HHHHHHHHHHHhcC----------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCC----ccc-------
Confidence 56667777766651 134555555544457899999999999998764321 110
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecCC
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKED 237 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~~ 237 (766)
. + ..-+..|+|++-|--+++..- +-.-....+.||++++.++..
T Consensus 435 ----~--~-~~~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 435 ----A--D-TLRPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred ----C--C-CCCCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 0 0 112357999987766666441 000112236799999999764
No 41
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.21 E-value=0.0064 Score=69.79 Aligned_cols=96 Identities=23% Similarity=0.304 Sum_probs=55.3
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCC-cEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
.+.+||.||..+.. ..+.+.|.+..+.+. -.|.|+|||+||+.+.+...+.....+
T Consensus 504 ~~~nli~na~~~~~--------------~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~--------- 560 (607)
T PRK11360 504 VLLNILINAVQAIS--------------ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTT--------- 560 (607)
T ss_pred HHHHHHHHHHHHhc--------------CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeC---------
Confidence 46677778776642 123455555544444 678999999999999886643221100
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.-+..|+|++-+--++...- ...-....+.||+|++.+.-
T Consensus 561 -----------~~~g~glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~ 601 (607)
T PRK11360 561 -----------KAKGTGLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPI 601 (607)
T ss_pred -----------CCCCCchhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecC
Confidence 01345788776544443321 00001123679999998754
No 42
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.19 E-value=0.0046 Score=76.15 Aligned_cols=98 Identities=22% Similarity=0.279 Sum_probs=58.9
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..|..||+||..+.. .+.+.|++..+.+.-.|+|+|||+||+.+++.+-+.. |.
T Consensus 516 ~il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~--- 569 (921)
T PRK15347 516 QILVNLLGNAVKFTE---------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTP--------FY--- 569 (921)
T ss_pred HHHHHHHHHHhhcCC---------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcC--------cc---
Confidence 356677888876531 2345555555545557899999999999998764421 11
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
+ . + .-.|..|+|++-|-.+++..- .-.-....+.||++++.|.-
T Consensus 570 ~----~--~-~~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~ 614 (921)
T PRK15347 570 Q----A--D-THSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPL 614 (921)
T ss_pred c----C--C-CCCCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEEC
Confidence 0 0 0 123568999986655555331 00001234789999998853
No 43
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=96.18 E-value=0.0039 Score=72.87 Aligned_cols=49 Identities=29% Similarity=0.462 Sum_probs=40.0
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhh
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGT 172 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~t 172 (766)
.-.++||++|+.||-. ..|.|.++-..-.+.|.|+|+||+++||.. ||+
T Consensus 23 a~~VeElv~NSiDA~A------------------t~V~v~V~~~t~sv~ViDdG~G~~rdDl~~-lg~ 71 (1142)
T KOG1977|consen 23 AQCVEELVLNSIDAEA------------------TCVAVRVNMETFSVQVIDDGFGMGRDDLEK-LGN 71 (1142)
T ss_pred HHHHHHHHhhccccCc------------------eEEEEEecCceeEEEEEecCCCccHHHHHH-HHh
Confidence 4578999999999963 246666677788999999999999999976 554
No 44
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.16 E-value=0.0064 Score=67.87 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=57.6
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~ 184 (766)
-.|..||.||+.+.. ....+.|.+....+ .-.|.|.|||+||+.+++.+-+...-+ .
T Consensus 275 qvl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~-~------- 332 (380)
T PRK09303 275 QVLLNLLDNAIKYTP--------------EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVR-L------- 332 (380)
T ss_pred HHHHHHHHHHHhcCC--------------CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCcee-C-------
Confidence 346677777765531 12333444333222 346899999999999998764421110 0
Q ss_pred hhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 185 ~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
......+..|+|++-|.-+++..- +..-....+.||++++.+-
T Consensus 333 --------~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP 376 (380)
T PRK09303 333 --------PRDEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLP 376 (380)
T ss_pred --------CCCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEe
Confidence 011223568999998877776542 0001122368999999873
No 45
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.08 E-value=0.0063 Score=75.06 Aligned_cols=96 Identities=25% Similarity=0.395 Sum_probs=58.8
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.|..||+||..+.. .+.+.|.+..+...-.|.|.|||+||+.+++.+.+.. |...
T Consensus 565 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~~~-- 619 (914)
T PRK11466 565 VITNLLSNALRFTD---------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQP--------FVQV-- 619 (914)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhch--------hhcC--
Confidence 56777888776531 2345555555545557899999999999998765421 2110
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
....|..|+|++-|--+++..- +..-....+.||+++++|-
T Consensus 620 --------~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP 661 (914)
T PRK11466 620 --------SGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 (914)
T ss_pred --------CCCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEE
Confidence 0123678999987666665431 0000112367999988874
No 46
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.01 E-value=0.012 Score=68.29 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=62.0
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.+.+||.||.+|+.+.. .....+.|.+..+.+.-.|.|.|||.||+.++..+-+.. +.+.+
T Consensus 436 vl~nLl~NAi~~~~~~~----------~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk-------- 496 (545)
T PRK15053 436 IVGNLLDNAFEASLRSD----------EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTR-------- 496 (545)
T ss_pred HHHHHHHHHHHHHhhCC----------CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCC--------
Confidence 58899999999984211 112233444443333456899999999999998764432 11111
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
..--|..|+|++-+.-+++.-- ...-....+.||++++.|..
T Consensus 497 --------~~~~~g~GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~ 539 (545)
T PRK15053 497 --------ADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPK 539 (545)
T ss_pred --------CCCCCCceeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECC
Confidence 1112456999998777666431 00001224799999999864
No 47
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.88 E-value=0.0093 Score=66.73 Aligned_cols=82 Identities=12% Similarity=0.193 Sum_probs=47.9
Q ss_pred CceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE-
Q 004236 138 DLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE- 216 (766)
Q Consensus 138 ~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve- 216 (766)
.+.|.+..+.+.-.|+|.|||.||+.+++.+.+...-+ +. ...--+.+|+|++-|--+++..-
T Consensus 350 ~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~-~~---------------~~~~~~g~GlGL~iv~~i~~~~~g 413 (435)
T PRK09467 350 WIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTR-GD---------------SARGSSGTGLGLAIVKRIVDQHNG 413 (435)
T ss_pred eEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCccc-CC---------------CCCCCCCeehhHHHHHHHHHHCCC
Confidence 34555555544456999999999999998765432111 00 00112568899886655555331
Q ss_pred ecCCCcCCCCceEEEEEec
Q 004236 217 ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 217 s~~~~~~~~~GT~I~L~Lk 235 (766)
.-.-......||+|++.+.
T Consensus 414 ~l~i~~~~~~G~~~~i~lp 432 (435)
T PRK09467 414 KVELGNSEEGGLSARAWLP 432 (435)
T ss_pred EEEEEECCCCcEEEEEEEe
Confidence 0001123368999999874
No 48
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=95.85 E-value=0.011 Score=73.38 Aligned_cols=99 Identities=23% Similarity=0.323 Sum_probs=62.2
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCC-cEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~ 184 (766)
-.|..||+||..+.. .+.+.|.+....+. -.|.|.|||+||+.+++.+-+.. |.
T Consensus 582 ~il~nLi~NAik~~~---------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~-- 636 (968)
T TIGR02956 582 QVLINLVGNAIKFTD---------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDA--------FT-- 636 (968)
T ss_pred HHHHHHHHHHHhhCC---------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhh--------hh--
Confidence 367888999887631 23466677666655 67999999999999998765422 11
Q ss_pred hhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 185 ~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
+ ......-|..|+|++-|--+++..- +..-....+.||++++.|.
T Consensus 637 -~-----~~~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp 682 (968)
T TIGR02956 637 -Q-----ADGRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLP 682 (968)
T ss_pred -c-----cCCCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEE
Confidence 0 0111234678999986655555431 0001123468999988874
No 49
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.61 E-value=0.017 Score=70.30 Aligned_cols=102 Identities=23% Similarity=0.302 Sum_probs=61.0
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEec-CCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~ 184 (766)
-.|..||+||.++. ..+.+.|.+..+ .+.-.|+|.|||+||+.+++.+-|-..-..
T Consensus 401 qvl~NLl~NAik~~---------------~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~-------- 457 (779)
T PRK11091 401 QILWNLISNAVKFT---------------QQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV-------- 457 (779)
T ss_pred HHHHHHHHHHHHhC---------------CCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc--------
Confidence 35678999988764 123456666655 334578999999999999987644221110
Q ss_pred hhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 185 ~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
+ ........|.-|+|++-|--+.+..- +..-....+.||++++.|.
T Consensus 458 -~----~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP 504 (779)
T PRK11091 458 -K----DSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIH 504 (779)
T ss_pred -c----CCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEe
Confidence 0 00122335677999887665555331 0001122367999998874
No 50
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.57 E-value=0.017 Score=70.08 Aligned_cols=101 Identities=17% Similarity=0.284 Sum_probs=60.0
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..+..||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+...- +++.
T Consensus 600 ~il~NLI~NAik~s~--------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~-t~~~------ 658 (703)
T TIGR03785 600 QMLDKLVDNAREFSP--------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMV-SVRD------ 658 (703)
T ss_pred HHHHHHHHHHHHHCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCe-ecCC------
Confidence 346678888777651 1233556655555556789999999999999876443211 1110
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecC-CCcCCCCceEEEEEe
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETD-PEKLLKRGTQITLYL 234 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~-~~~~~~~GT~I~L~L 234 (766)
....--+..|+|++-|-.+++..- +.. .....+.||++++.|
T Consensus 659 -------~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~L 702 (703)
T TIGR03785 659 -------QGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISL 702 (703)
T ss_pred -------CCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEe
Confidence 011122468999998877776542 000 001114799999876
No 51
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.57 E-value=0.014 Score=60.63 Aligned_cols=48 Identities=38% Similarity=0.547 Sum_probs=35.6
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD 168 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 168 (766)
..|..||+||.+|+. .+.+.|.+....+.-.|.|.|||.||+.+.+..
T Consensus 231 ~vl~nLi~NAi~~~~---------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 231 QVLVNLLSNAIKYTP---------------GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHhccCC---------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 468899999999972 234455555443346899999999999999654
No 52
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.51 E-value=0.018 Score=70.93 Aligned_cols=97 Identities=26% Similarity=0.430 Sum_probs=58.9
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEec---------------CCCcEEEEEeCCCCCCHHHHHHhh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD---------------PENGTITITDTGIGMTKEELVDCL 170 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---------------~~~~~l~I~DnGiGMt~~el~~~L 170 (766)
-.+..||+||..++. ..+.+.|.+..+ .+.-.|.|.|||+||+.+++.+-+
T Consensus 563 qvl~NLl~NAik~~~--------------~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iF 628 (828)
T PRK13837 563 QVLMNLCSNAAQAMD--------------GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIF 628 (828)
T ss_pred HHHHHHHHHHHHHcc--------------cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhh
Confidence 357788888887762 123455555543 222458999999999999986533
Q ss_pred hhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 171 GTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 171 ~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.. |. . .+ . |..|+|++-|-.+++..- +..-....++||++++.|--
T Consensus 629 e~--------F~---~------~~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~ 675 (828)
T PRK13837 629 EP--------FF---T------TR-A--GGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPP 675 (828)
T ss_pred CC--------cc---c------CC-C--CCCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeC
Confidence 21 10 0 01 1 677999988776666531 00011123689999998853
No 53
>PRK10337 sensor protein QseC; Provisional
Probab=95.46 E-value=0.018 Score=64.82 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=54.3
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.++.||.||..+.. ... .|.|.... ..|.|.|||.||+.+++...+-..-+.
T Consensus 356 vl~Nli~NA~k~~~--------------~~~--~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f~~~---------- 407 (449)
T PRK10337 356 LVRNLLDNAIRYSP--------------QGS--VVDVTLNA--RNFTVRDNGPGVTPEALARIGERFYRP---------- 407 (449)
T ss_pred HHHHHHHHHHhhCC--------------CCC--eEEEEEEe--eEEEEEECCCCCCHHHHHHhcccccCC----------
Confidence 56778888766631 122 35554432 379999999999999987654321110
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEe
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYL 234 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~L 234 (766)
+..-.+..|+|+.-|--+++..- +-.-....+.||+|++.+
T Consensus 408 -------~~~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 408 -------PGQEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred -------CCCCCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 01123558999887666665431 000112235799998864
No 54
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.43 E-value=0.02 Score=66.64 Aligned_cols=96 Identities=23% Similarity=0.392 Sum_probs=56.7
Q ss_pred HhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhhhcc
Q 004236 110 ELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENN 189 (766)
Q Consensus 110 ELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~ 189 (766)
=|||||.||+.. ...+.+.|+...+.+.-.|+|+|||-|+..+-+...|--. |
T Consensus 504 NLl~NALDA~~~------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF-------~-------- 556 (603)
T COG4191 504 NLLQNALDAMAG------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPF-------F-------- 556 (603)
T ss_pred HHHHHHHHHhcC------------CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCc-------c--------
Confidence 489999999942 1234455555556666789999999999999887644211 0
Q ss_pred cCCCCCCcccc-cccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 190 DLGADNGLIGQ-FGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 190 ~~~~~~~~IGq-FGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
-.+.+|+ .|+|+-=+.-++...- +..-......||.++|+|+.
T Consensus 557 ----TtK~~~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 557 ----TTKPVGKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred ----ccCcccCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 0122333 2555432222222221 11112345799999999973
No 55
>PRK10490 sensor protein KdpD; Provisional
Probab=95.39 E-value=0.017 Score=71.92 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=59.7
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
-.+..||+||..+.. ....+.|.+..+.+.-.|.|.|||.||+.+++.+.+... .++.
T Consensus 781 qVL~NLL~NAik~s~--------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF-~~~~------- 838 (895)
T PRK10490 781 RVLINLLENAVKYAG--------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKF-ARGN------- 838 (895)
T ss_pred HHHHHHHHHHHHhCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCC-ccCC-------
Confidence 356778888776641 123455555555455678999999999999976644221 1110
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.....+..|+|++-|-.+++..- +..-....+.||++++.|--
T Consensus 839 --------~~~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl 882 (895)
T PRK10490 839 --------KESAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPL 882 (895)
T ss_pred --------CCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeEC
Confidence 11123457999987766665431 00011123579999998853
No 56
>PRK09835 sensor kinase CusS; Provisional
Probab=95.18 E-value=0.023 Score=64.28 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=46.6
Q ss_pred CceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE-
Q 004236 138 DLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE- 216 (766)
Q Consensus 138 ~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve- 216 (766)
.+.|++..+.+.-.|.|.|||.||+.+++...+...-++. ......-+..|+|++-|--+++..-
T Consensus 396 ~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~--------------~~~~~~~~g~GlGL~i~~~i~~~~~g 461 (482)
T PRK09835 396 AITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVD--------------PSRQRKGEGSGIGLAIVKSIVVAHKG 461 (482)
T ss_pred eEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCC--------------CCCCCCCCCcchHHHHHHHHHHHCCC
Confidence 3556665555556799999999999999876432111110 0111233568999875544433321
Q ss_pred ecCCCcCCCCceEEEEEec
Q 004236 217 ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 217 s~~~~~~~~~GT~I~L~Lk 235 (766)
.- .....+.||++++.+.
T Consensus 462 ~i-~~~s~~~g~~~~i~lP 479 (482)
T PRK09835 462 TV-AVTSDARGTRFVISLP 479 (482)
T ss_pred EE-EEEECCCcEEEEEEee
Confidence 00 0001135999999874
No 57
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.14 E-value=0.026 Score=69.52 Aligned_cols=101 Identities=19% Similarity=0.296 Sum_probs=58.8
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecC--CC---cEEEEEeCCCCCCHHHHHHhhhhhhccCcHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--EN---GTITITDTGIGMTKEELVDCLGTIAQSGTSK 180 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~---~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~ 180 (766)
-.|..||+||..+.. .+.+.|.+.... ++ -.|.|.|||+||+.+++.+.+-..-+.
T Consensus 411 ~vl~NLl~NAik~~~---------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~---- 471 (919)
T PRK11107 411 QIITNLVGNAIKFTE---------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQA---- 471 (919)
T ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccC----
Confidence 357788888876641 233445554322 21 348999999999999987644221110
Q ss_pred HHHHhhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 181 FLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 181 f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
........|..|+|++-|--+++..- +..-....+.||++++.+.
T Consensus 472 ----------~~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp 517 (919)
T PRK11107 472 ----------DASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLP 517 (919)
T ss_pred ----------CCCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEE
Confidence 00112235778999987766665431 0000122368999998875
No 58
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.04 E-value=0.034 Score=69.19 Aligned_cols=101 Identities=22% Similarity=0.230 Sum_probs=58.4
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC---CcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE---NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFL 182 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~ 182 (766)
-.|.-||+||..+.. .+.+.|.+..... .-.|.|.|||+||+.+++.+-+...-. .+
T Consensus 568 QVL~NLL~NAik~t~---------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t-~~---- 627 (894)
T PRK10618 568 KILLLLLNYAITTTA---------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLN-QT---- 627 (894)
T ss_pred HHHHHHHHHHHHhCC---------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCcccc-CC----
Confidence 356788889876631 2334455544322 246899999999999998764422110 00
Q ss_pred HHhhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 183 KALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 183 ~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.....-+..|+|++-|--+++..- +..-....+.||++++.|.-
T Consensus 628 ----------~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl 672 (894)
T PRK10618 628 ----------QGDRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKM 672 (894)
T ss_pred ----------CCCCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEc
Confidence 011122457899887666665431 00011234789999999864
No 59
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.87 E-value=0.034 Score=69.49 Aligned_cols=102 Identities=20% Similarity=0.293 Sum_probs=60.5
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
-.|.-||+||..+.. .+.+.|.+..+...-.|.|.|||+||+.+++.+-+...-+.+
T Consensus 565 qvl~NLl~NAik~t~---------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~-------- 621 (924)
T PRK10841 565 QVISNLLSNAIKFTD---------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVG-------- 621 (924)
T ss_pred HHHHHHHHHHHhhCC---------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCC--------
Confidence 357788888876631 233556665554445689999999999999876442211100
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.......+..|+|++-|-.+++..- +..-....+.||++++.|--
T Consensus 622 ------~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~ 667 (924)
T PRK10841 622 ------TGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPL 667 (924)
T ss_pred ------CCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 0111223567999987766665431 00001123689999998853
No 60
>PRK03660 anti-sigma F factor; Provisional
Probab=94.51 E-value=0.085 Score=50.47 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=53.6
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..+.|++.||...- +. . .....+.|++....+.-.++|.|+|.||+. ....+.. |.
T Consensus 42 ~~l~eli~Nai~h~----~~---~----~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~--------~~--- 97 (146)
T PRK03660 42 TAVSEAVTNAIIHG----YE---N----NPDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQP--------LY--- 97 (146)
T ss_pred HHHHHHHHHHHHHh----cC---C----CCCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCC--------Cc---
Confidence 45799999987431 11 0 012345566555544456899999999974 2121111 00
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeEecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVEETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves~~~~~~~~~GT~I~L~Lk~ 236 (766)
.. .. .-+.-|+|++-+-..++.++-. .....||.+++.++-
T Consensus 98 ~~---~~----~~~~~GlGL~i~~~~~~~i~~~---~~~~~Gt~~~i~~~~ 138 (146)
T PRK03660 98 TT---KP----ELERSGMGFTVMESFMDEVEVE---SEPGKGTTVRMKKYL 138 (146)
T ss_pred cc---CC----CCCCccccHHHHHHhCCeEEEE---ecCCCcEEEEEEEEe
Confidence 00 00 0123588887666677777511 112579988777543
No 61
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.11 E-value=0.086 Score=49.96 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=50.9
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..+.|+++||..+- |. ......+.|.+..+.+.-.|.|.|+|.||+. +...+.. |.
T Consensus 42 ~~l~eli~Nai~h~----~~-------~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~--~~~~~~~--------~~--- 97 (137)
T TIGR01925 42 TAVSEAVTNAIIHG----YE-------ENCEGVVYISATIEDHEVYITVRDEGIGIEN--LEEAREP--------LY--- 97 (137)
T ss_pred HHHHHHHHHHHHhc----cC-------CCCCcEEEEEEEEeCCEEEEEEEEcCCCcCc--hhHhhCC--------Cc---
Confidence 35789999987431 11 0112345555555555566899999999972 2221111 00
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeEecCCCcCCCCceEEEEEe
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVEETDPEKLLKRGTQITLYL 234 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves~~~~~~~~~GT~I~L~L 234 (766)
. . . ...+.-|+|++-+-.+.++++- ....+.||+|++..
T Consensus 98 ~----~--~-~~~~~~GlGL~lv~~~~~~l~~---~~~~~~Gt~v~i~~ 136 (137)
T TIGR01925 98 T----S--K-PELERSGMGFTVMENFMDDVSV---DSEKEKGTKIIMKK 136 (137)
T ss_pred c----c--C-CCCCCCcccHHHHHHhCCcEEE---EECCCCCeEEEEEe
Confidence 0 0 0 0123457776644445556631 11236899998864
No 62
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.07 E-value=0.12 Score=62.41 Aligned_cols=55 Identities=27% Similarity=0.335 Sum_probs=33.7
Q ss_pred HHHhHHhHHHHHH----HHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH
Q 004236 108 LRELVSNASDALD----KLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD 168 (766)
Q Consensus 108 lRELIqNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 168 (766)
|..||.||.|+.- .|+.... ...+.+.|+...+.+.-.|+|.|+|.||+.+.+..
T Consensus 390 L~hLirNAidHgie~p~~R~~~gk------p~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAAGK------NSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhcCC------CCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 5689999999852 2221100 11233444444443445689999999999988754
No 63
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.86 E-value=0.067 Score=68.25 Aligned_cols=99 Identities=22% Similarity=0.276 Sum_probs=57.9
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEe---cCCC--cEEEEEeCCCCCCHHHHHHhhhhhhccCcHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP---DPEN--GTITITDTGIGMTKEELVDCLGTIAQSGTSK 180 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~---d~~~--~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~ 180 (766)
-.+..||+||.++.. .+.+.|.+.. +... -.|+|.|||+||+.+++.+-+...-+ +
T Consensus 831 qvl~NLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~-~--- 891 (1197)
T PRK09959 831 QVLSNLLSNALKFTT---------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQ-T--- 891 (1197)
T ss_pred HHHHHHHHHHHHhCC---------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccc-c---
Confidence 467899999988752 1233444432 2222 24789999999999998764421110 0
Q ss_pred HHHHhhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 181 FLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 181 f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
......+..|+|++-|-.+++..- +..-....+.||+++++|-
T Consensus 892 ------------~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP 935 (1197)
T PRK09959 892 ------------SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIP 935 (1197)
T ss_pred ------------ccCCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEE
Confidence 011123568999997766665431 0000112367999999884
No 64
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=93.85 E-value=0.079 Score=61.43 Aligned_cols=98 Identities=28% Similarity=0.416 Sum_probs=62.6
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
+.|.=||-||.||..+ . .....+.+.|..+.+.-.|.|.|||.||+.+.....+ ..|.|.+
T Consensus 430 tIlGNLidNA~eA~~~-~----------~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iF-e~G~Stk------- 490 (537)
T COG3290 430 TILGNLIDNALEALLA-P----------EENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIF-EKGVSTK------- 490 (537)
T ss_pred HHHHHHHHHHHHHhhc-c----------CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHH-hcCcccc-------
Confidence 5677799999999843 0 1234455555544444557999999999999887533 3444322
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeEe----cCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVEE----TDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves----~~~~~~~~~GT~I~L~Lk~ 236 (766)
-.|.-|+|.| +|..-|+. ..-....+.||+..++|-.
T Consensus 491 -----------~~~~rGiGL~---Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~ 531 (537)
T COG3290 491 -----------NTGGRGIGLY---LVKQLVERLGGSIEVESEKGQGTRFSIYIPK 531 (537)
T ss_pred -----------CCCCCchhHH---HHHHHHHHcCceEEEeeCCCCceEEEEECCC
Confidence 1577899976 45555541 1112235899999999843
No 65
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=93.85 E-value=0.049 Score=63.97 Aligned_cols=27 Identities=11% Similarity=0.457 Sum_probs=19.6
Q ss_pred CceEEEEecCCCcEEEEEeCCCCCCHH
Q 004236 138 DLEIRIKPDPENGTITITDTGIGMTKE 164 (766)
Q Consensus 138 ~~~I~I~~d~~~~~l~I~DnGiGMt~~ 164 (766)
.+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 489 ~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 489 EVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred eEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 355666555445678999999999864
No 66
>PRK13557 histidine kinase; Provisional
Probab=93.39 E-value=0.087 Score=60.18 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=40.0
Q ss_pred EEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceE
Q 004236 151 TITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQ 229 (766)
Q Consensus 151 ~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~ 229 (766)
.|+|.|||+||+.+....-+... .+. + ...+..|+|++-+--+....- +..-....+.||+
T Consensus 326 ~i~v~D~G~Gi~~~~~~~if~~~-~~~----------------~-~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~ 387 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARVMDPF-FTT----------------K-EEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTT 387 (540)
T ss_pred EEEEEcCCCCCCHHHHHhccCCC-ccc----------------C-CCCCCCCccHHHHHHHHHHCCCEEEEEecCCCceE
Confidence 58999999999999876543211 110 0 112467888886554444321 0000122368999
Q ss_pred EEEEecC
Q 004236 230 ITLYLKE 236 (766)
Q Consensus 230 I~L~Lk~ 236 (766)
++++|--
T Consensus 388 f~i~lP~ 394 (540)
T PRK13557 388 VRLYFPA 394 (540)
T ss_pred EEEEeeC
Confidence 9998853
No 67
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=93.28 E-value=0.14 Score=55.62 Aligned_cols=94 Identities=22% Similarity=0.271 Sum_probs=52.6
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC------------CcEEEEEeCCCCCCHHHHHHhhhhh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE------------NGTITITDTGIGMTKEELVDCLGTI 173 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~------------~~~l~I~DnGiGMt~~el~~~L~tI 173 (766)
-.++.||+||..|+.. ... .|.|..... .-.|.|.|||.||+.+...+.+.
T Consensus 240 ~vl~nLl~NA~~~~~~-------------~~~--~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~-- 302 (348)
T PRK11073 240 QVLLNIVRNALQALGP-------------EGG--TITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFY-- 302 (348)
T ss_pred HHHHHHHHHHHHHhcc-------------CCC--eEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccC--
Confidence 4678899999988721 122 344432111 12589999999999988765331
Q ss_pred hccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 174 AQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 174 a~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
.+ | . ..-+..|+|++-|-.+++..- +. ..+..+.||++++.|.
T Consensus 303 --~~---~----~---------~~~~g~GlGL~i~~~iv~~~gG~i-~~~s~~~~~~f~i~lP 346 (348)
T PRK11073 303 --PM---V----S---------GREGGTGLGLSIARNLIDQHSGKI-EFTSWPGHTEFSVYLP 346 (348)
T ss_pred --Cc---c----c---------CCCCCccCCHHHHHHHHHHcCCeE-EEEecCCceEEEEEEe
Confidence 11 0 0 001346899877655555431 00 0011133699998874
No 68
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=93.08 E-value=0.2 Score=60.20 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=76.7
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH-------HhhhhhhccCc
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSGT 178 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~L~tIa~Sg~ 178 (766)
..+.|+|-||.|=... ..--.|+|++++ ++.|+|.|||-||+-+--. ..+.+...+|.
T Consensus 37 hlv~EIvdNavDE~~a--------------g~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGg 101 (637)
T TIGR01058 37 HLVWEIVDNSVDEVLA--------------GYADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGG 101 (637)
T ss_pred eehhhhhcchhhhhhc--------------CCCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEecccC
Confidence 3456999999994311 112357777764 5699999999999863211 11112223332
Q ss_pred HHHHHHhhhcccCCCCCC-cccccccceeeeeeecceeE--------------ecC---------CCcCCCCceEEEEEe
Q 004236 179 SKFLKALKENNDLGADNG-LIGQFGVGFYSAFLVAQKVE--------------ETD---------PEKLLKRGTQITLYL 234 (766)
Q Consensus 179 ~~f~~~~~~~~~~~~~~~-~IGqFGIGf~S~Fmvad~Ve--------------s~~---------~~~~~~~GT~I~L~L 234 (766)
+ | .+.... .-|.-|||.-.+=.+++.++ +.+ .+....+||+|+...
T Consensus 102 k-f---------d~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg~~~~~l~~~~~~~~~GT~V~F~P 171 (637)
T TIGR01058 102 K-F---------DQGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGGKIVQSLKKIGTTKKTGTLVHFHP 171 (637)
T ss_pred c-C---------CCCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCCcCcCCcccccCCCCCceEEEEEe
Confidence 2 1 111112 35778999777666666553 111 122236899998776
Q ss_pred cCCCc-ccccchHHHHHHHHhhCCCc-ccceeecc
Q 004236 235 KEDDK-YEFSEPTRIQGLVKNYSQFV-SFPIYTWQ 267 (766)
Q Consensus 235 k~~~~-~e~~~~~~i~~li~~ys~fi-~~pI~~~~ 267 (766)
..+-- ..-++.+.|++.++..+-.. ..-|++++
T Consensus 172 D~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~d 206 (637)
T TIGR01058 172 DPTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTD 206 (637)
T ss_pred CHHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 54310 01145667777777766333 35566654
No 69
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=92.59 E-value=0.34 Score=57.22 Aligned_cols=138 Identities=18% Similarity=0.190 Sum_probs=82.5
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH--------HHHhhhhhhcc
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIAQS 176 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~L~tIa~S 176 (766)
...+.|.|-||.|=--. +.--.|.|+++ +++.|+|.|||-||+-+. +.- +.|+...
T Consensus 38 hHlv~EVvDNsiDEala--------------G~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEv-I~T~LHA 101 (635)
T COG0187 38 HHLVWEVVDNSIDEALA--------------GYADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEV-IFTVLHA 101 (635)
T ss_pred eeeEeEeeechHhHHhh--------------CcCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEE-EEEeecc
Confidence 45678999999985421 12335777776 668999999999998765 222 2233333
Q ss_pred CcHHHHHHhhhcccCCCCCCc-ccccccceeeeeeecceeE--------------ec----------CCCcCCCCceEEE
Q 004236 177 GTSKFLKALKENNDLGADNGL-IGQFGVGFYSAFLVAQKVE--------------ET----------DPEKLLKRGTQIT 231 (766)
Q Consensus 177 g~~~f~~~~~~~~~~~~~~~~-IGqFGIGf~S~Fmvad~Ve--------------s~----------~~~~~~~~GT~I~ 231 (766)
|-+ | .+..... =|-.|||.--|=.++++++ +. +.+.....||+|+
T Consensus 102 GGK-F---------d~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~ 171 (635)
T COG0187 102 GGK-F---------DNDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFERGVPVTPLEVIGSTDTKKTGTKVR 171 (635)
T ss_pred Ccc-c---------CCCccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeCCCcCCCceecccCCCCCCccEEE
Confidence 332 2 1112222 3667999877777777664 11 1123346799998
Q ss_pred EEecCCCc-ccccchHHHHHHHHhhCCCcc-cceeeccc
Q 004236 232 LYLKEDDK-YEFSEPTRIQGLVKNYSQFVS-FPIYTWQE 268 (766)
Q Consensus 232 L~Lk~~~~-~e~~~~~~i~~li~~ys~fi~-~pI~~~~~ 268 (766)
.+..+.-- ..-.+...|++.++.++=..+ .-|.+.++
T Consensus 172 F~PD~~iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~ 210 (635)
T COG0187 172 FKPDPEIFGETEFDYEILKRRLRELAFLNKGVKITLTDE 210 (635)
T ss_pred EEcChHhcCCcccCHHHHHHHHHHHhccCCCCEEEEEec
Confidence 77654310 011466778888877764443 67777654
No 70
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=90.42 E-value=0.75 Score=51.38 Aligned_cols=121 Identities=21% Similarity=0.217 Sum_probs=75.4
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHH
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~ 184 (766)
...+=||.-||..|.-+..-. . ..+-+++.|.|..+.++-++.|+|-|=|++..++...+ .-..|-..
T Consensus 262 ~ymlfElfKNamrATve~h~~----~--~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf-~Y~ySTa~----- 329 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHHGD----D--GDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLF-SYMYSTAP----- 329 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----C--CCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHH-hhhcccCC-----
Confidence 467889999999998653311 0 11245567777777788999999999999999987633 33333221
Q ss_pred hhhcccCCCCCCcccccccceeeeeeecceeEec-CCCcCCCCceEEEEEecCCCc
Q 004236 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVEET-DPEKLLKRGTQITLYLKEDDK 239 (766)
Q Consensus 185 ~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves~-~~~~~~~~GT~I~L~Lk~~~~ 239 (766)
+...| +....+.-.||-|+--+=++|.-.--+ ..-.-.+.||.+.+|||--..
T Consensus 330 -~~~~d-~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ls~ 383 (414)
T KOG0787|consen 330 -APSSD-NNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKALSM 383 (414)
T ss_pred -CCCCC-CCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEEEeccCCc
Confidence 10000 111346667888866554554433100 011234899999999998766
No 71
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=90.24 E-value=0.68 Score=54.12 Aligned_cols=50 Identities=26% Similarity=0.322 Sum_probs=38.2
Q ss_pred CCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHH
Q 004236 101 YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVD 168 (766)
Q Consensus 101 Ys~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~ 168 (766)
-.-|.-.|.|||-|+.||- ...|.|.+-.+ -+.|.|.|||-|+.++||.=
T Consensus 25 I~RP~NAlKEliENSLDA~------------------ST~I~V~vk~GGLKLlQisDnG~GI~reDl~i 75 (694)
T KOG1979|consen 25 IQRPVNALKELIENSLDAN------------------STSIDVLVKDGGLKLLQISDNGSGIRREDLPI 75 (694)
T ss_pred hhchHHHHHHHHhccccCC------------------CceEEEEEecCCeEEEEEecCCCccchhhhHH
Confidence 3456778999999999995 23577766333 36789999999999999853
No 72
>PLN03128 DNA topoisomerase 2; Provisional
Probab=89.70 E-value=0.68 Score=58.94 Aligned_cols=46 Identities=28% Similarity=0.482 Sum_probs=34.8
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 164 (766)
-.+.|.|-||.|-. +| ++ .--.|.|+++.+++.|+|.|||-||+-+
T Consensus 55 ki~dEIldNAvDe~--~~-----~g------~~~~I~V~i~~~dgsIsV~DnGrGIPv~ 100 (1135)
T PLN03128 55 KIFDEILVNAADNK--QR-----DP------SMDSLKVDIDVEQNTISVYNNGKGIPVE 100 (1135)
T ss_pred HHHHHHHHHHHHHh--hh-----cC------CCcEEEEEEEcCCCeEEEEecCccccCC
Confidence 47789999999964 12 11 1236888888878899999999999864
No 73
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=89.30 E-value=0.55 Score=55.34 Aligned_cols=52 Identities=25% Similarity=0.459 Sum_probs=38.4
Q ss_pred HhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcE--EEEEeCCCCCCHHHHHHhh
Q 004236 110 ELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGT--ITITDTGIGMTKEELVDCL 170 (766)
Q Consensus 110 ELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~--l~I~DnGiGMt~~el~~~L 170 (766)
-||+||.+|+++..-. +.+...|+++.|..+.. ++|.|||.|++.+.+.+.|
T Consensus 607 NliKNA~EAi~~~~~~---------e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~ 660 (712)
T COG5000 607 NLLKNAAEAIEAVEAE---------ERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRAL 660 (712)
T ss_pred HHHHhHHHHhhhcccc---------cCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhc
Confidence 4899999999876531 11222688888766544 6999999999999987644
No 74
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=89.08 E-value=0.58 Score=46.26 Aligned_cols=96 Identities=22% Similarity=0.326 Sum_probs=56.2
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..+.|++.||+.+..+ + .....+.|.+....+.-.+.|+|+|.||+...+...+. .....
T Consensus 45 lav~Ea~~Nai~Hg~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~---p~~~~------ 104 (161)
T PRK04069 45 IAVSEACTNAVQHAYK-------E----DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLG---PYDIS------ 104 (161)
T ss_pred HHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccC---CCCCC------
Confidence 4789999999987621 0 11234566666665667789999999999766543221 00000
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeEecCCCcCCCCceEEEEE
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVEETDPEKLLKRGTQITLY 233 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves~~~~~~~~~GT~I~L~ 233 (766)
...+....| |+|++-+-.++|+++-. . ..||+|.|.
T Consensus 105 -----~~~~~~~~~--G~GL~li~~l~d~v~~~----~-~~G~~v~~~ 140 (161)
T PRK04069 105 -----KPIEDLREG--GLGLFLIETLMDDVTVY----K-DSGVTVSMT 140 (161)
T ss_pred -----CcccccCCC--ceeHHHHHHHHHhEEEE----c-CCCcEEEEE
Confidence 000111223 66766666678888411 1 358887765
No 75
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.04 E-value=0.7 Score=48.38 Aligned_cols=48 Identities=27% Similarity=0.428 Sum_probs=31.7
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCC--cEEEEEeCCCCCCHHH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN--GTITITDTGIGMTKEE 165 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~~e 165 (766)
++-||++||.-+- | +. ...+.+.|.+..+.+. ..++|+|||.|++.+.
T Consensus 126 iv~EL~tNa~Kha----f--~~-----~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~ 175 (221)
T COG3920 126 IVHELVTNALKHA----F--LS-----RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEA 175 (221)
T ss_pred HHHHHHHHHHHhc----C--CC-----CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCCC
Confidence 6789999997543 1 11 1234455555555554 5899999999987543
No 76
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=88.61 E-value=1.2 Score=57.45 Aligned_cols=49 Identities=29% Similarity=0.474 Sum_probs=35.4
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 164 (766)
-.+.|+|-||.|-.. | ++ ....--.|.|.++++.+.|+|.|||-||+-+
T Consensus 60 ki~dEIldNAvDe~~--r-----~~---~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~ 108 (1388)
T PTZ00108 60 KIFDEILVNAADNKA--R-----DK---GGHRMTYIKVTIDEENGEISVYNDGEGIPVQ 108 (1388)
T ss_pred hhHHHHhhhhhhhhc--c-----cC---CCCCccEEEEEEeccCCeEEEEecCCcccCC
Confidence 577899999999652 2 10 0112246888888887899999999998764
No 77
>PLN03237 DNA topoisomerase 2; Provisional
Probab=88.35 E-value=0.69 Score=59.68 Aligned_cols=46 Identities=26% Similarity=0.389 Sum_probs=35.1
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 164 (766)
-.+.|.|-||.|-.. | + ..--.|.|+++.+++.|+|.|||-||+-+
T Consensus 80 kifdEIldNAvDe~~--r-----~------g~~~~I~V~I~~~~gsIsV~DnGRGIPV~ 125 (1465)
T PLN03237 80 KIFDEILVNAADNKQ--R-----D------PKMDSLRVVIDVEQNLISVYNNGDGVPVE 125 (1465)
T ss_pred hhHHHHhhhhHhHHh--h-----c------CCCCEEEEEEEcCCCEEEEEecCccccCC
Confidence 578899999999642 2 1 12236788888788999999999999865
No 78
>PRK13560 hypothetical protein; Provisional
Probab=87.41 E-value=0.61 Score=56.20 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=29.6
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC---CcEEEEEeCCCCCCHH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE---NGTITITDTGIGMTKE 164 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~~ 164 (766)
.|.+|++||..+... ......|.|..... .-.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999877521 12223455544322 2468999999999874
No 79
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=87.25 E-value=0.74 Score=55.08 Aligned_cols=47 Identities=21% Similarity=0.327 Sum_probs=32.6
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e 165 (766)
-.+.|+|-||.|=.. + ++. ..--.|.|.++ ++.|+|+|||-||+-+-
T Consensus 48 hi~~EIldNavDe~~--~-----~~~----g~~~~I~V~i~--dgsisV~dnGrGIPv~~ 94 (602)
T PHA02569 48 KIIDEIIDNSVDEAI--R-----TNF----KFANKIDVTIK--NNQVTVSDNGRGIPQAM 94 (602)
T ss_pred eeeehhhhhhhhhhh--c-----cCC----CCCcEEEEEEc--CCEEEEEECCCcccCCc
Confidence 456799999999531 1 110 12236777777 67999999999998643
No 80
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=85.65 E-value=0.73 Score=53.73 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=27.5
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 164 (766)
.++|++.||..+.. ...+.|++..+.+.-.|+|+|||.||+.+
T Consensus 414 il~nlL~NAiKha~---------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD---------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 45677777765431 12345555544444578999999999754
No 81
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=85.37 E-value=1 Score=54.87 Aligned_cols=54 Identities=28% Similarity=0.382 Sum_probs=37.4
Q ss_pred HHHHhHHhHHHHH----HHHHhhhccCCCCCCCCCCceEEEEecCCC--cEEEEEeCCCCCCHHHHHH
Q 004236 107 FLRELVSNASDAL----DKLRFLSVTEPSLLGDAGDLEIRIKPDPEN--GTITITDTGIGMTKEELVD 168 (766)
Q Consensus 107 flRELIqNA~DA~----~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~~el~~ 168 (766)
.|-=||=||+|+. +.|+- .+..+...|.+..-..+ -.|+|+|.|-|++.+-|.+
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a--------~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~ 495 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRA--------AGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIRE 495 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHH--------cCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHH
Confidence 4556788999985 23331 23455677888765443 3479999999999999876
No 82
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=84.86 E-value=1.3 Score=53.96 Aligned_cols=87 Identities=15% Similarity=0.233 Sum_probs=54.6
Q ss_pred CCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecce
Q 004236 135 DAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQK 214 (766)
Q Consensus 135 ~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~ 214 (766)
+..+++|++..+.++-.+.|.|||-|++.+++.+-|-...+-++ ... ...-|+|++=|=.+-+.
T Consensus 793 ~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~---------------~~~-~~G~GLGLsIc~~iv~a 856 (890)
T COG2205 793 PGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNK---------------ESA-TRGVGLGLAICRGIVEA 856 (890)
T ss_pred CCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcCCC---------------CCC-CCCccccHHHHHHHHHH
Confidence 34557777777887888999999999999999887654433211 112 44457777644322221
Q ss_pred eE-ecCCCcCCCCceEEEEEecCC
Q 004236 215 VE-ETDPEKLLKRGTQITLYLKED 237 (766)
Q Consensus 215 Ve-s~~~~~~~~~GT~I~L~Lk~~ 237 (766)
-- +..-.+..++|+.++++|--+
T Consensus 857 hgG~I~a~~~~~gGa~f~~~LP~~ 880 (890)
T COG2205 857 HGGTISAENNPGGGAIFVFTLPVE 880 (890)
T ss_pred cCCeEEEEEcCCCceEEEEEeecC
Confidence 11 111123568999999998544
No 83
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=83.40 E-value=1.6 Score=53.87 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=31.7
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e 165 (766)
..+.|+|-||.|=... ..--.|.|++++ ++.|+|+|||-||+-+.
T Consensus 132 hLv~EIlDNSVDE~la--------------G~~~~I~V~i~~-DgsItV~DnGRGIPvd~ 176 (903)
T PTZ00109 132 QLLFEILDNSVDEYLA--------------GECNKITVVLHK-DGSVEISDNGRGIPCDV 176 (903)
T ss_pred EEEEEEeeccchhhcc--------------CCCcEEEEEEcC-CCeEEEEeCCccccccc
Confidence 4678999999984311 112357777765 47999999999998643
No 84
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=81.63 E-value=1.5 Score=48.67 Aligned_cols=47 Identities=15% Similarity=0.335 Sum_probs=35.9
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV 167 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~ 167 (766)
-+++|.|+||.-+- ...++.|++..+.+.-.|+|.|||.|.+.+...
T Consensus 282 rivQEaltN~~rHa---------------~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~~ 328 (365)
T COG4585 282 RIVQEALTNAIRHA---------------QATEVRVTLERTDDELRLEVIDNGVGFDPDKEG 328 (365)
T ss_pred HHHHHHHHHHHhcc---------------CCceEEEEEEEcCCEEEEEEEECCcCCCccccC
Confidence 47899999987543 245577888777667789999999998876653
No 85
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=81.58 E-value=2.8 Score=38.87 Aligned_cols=92 Identities=24% Similarity=0.321 Sum_probs=56.8
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHH
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~ 184 (766)
...+.|++.||..+... ......+.|++..+.+.-.|+|+|+|-|++...+.....
T Consensus 33 ~lav~E~~~Nav~H~~~-----------~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~------------- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYP-----------GDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDP------------- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCC-----------CCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccc-------------
Confidence 46789999999988621 011244566666777777899999999988776533110
Q ss_pred hhhcccCCCCCCcccccccceeeeeeecceeEecCCCcCCCCceEEEEE
Q 004236 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVEETDPEKLLKRGTQITLY 233 (766)
Q Consensus 185 ~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves~~~~~~~~~GT~I~L~ 233 (766)
...+....| |.|++=.=.++|++.= +...||+|+|.
T Consensus 89 ------~~~~~~~~~--G~Gl~li~~l~D~~~~-----~~~~gn~v~l~ 124 (125)
T PF13581_consen 89 ------WEPDSLREG--GRGLFLIRSLMDEVDY-----REDGGNTVTLR 124 (125)
T ss_pred ------ccCCCCCCC--CcCHHHHHHHHcEEEE-----ECCCeEEEEEE
Confidence 000112234 4555555556777721 24778988874
No 86
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=80.99 E-value=1.9 Score=50.33 Aligned_cols=43 Identities=26% Similarity=0.522 Sum_probs=32.4
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 164 (766)
.+||-++||.-.- ....+.|.+......-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa---------------~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHA---------------QASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhc---------------ccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 7899999987543 134566777776677889999999997644
No 87
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=80.46 E-value=2.4 Score=41.95 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=56.5
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..+.|++.||..+.-. ......+.|.+..+.+.-.+.|+|+|.||+...+..-++ .....
T Consensus 45 lav~Ea~~Nai~ha~~-----------~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~~------ 104 (159)
T TIGR01924 45 IAVSEACTNAVKHAYK-----------EGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDGS------ 104 (159)
T ss_pred HHHHHHHHHHHHhccC-----------CCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCCC------
Confidence 4789999999877521 012344566666665556678999999998666543111 10000
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeEecCCCcCCCCceEEEEEe
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVEETDPEKLLKRGTQITLYL 234 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves~~~~~~~~~GT~I~L~L 234 (766)
...+.... -|.|++-+=-++|.|.=. . ..||+|+|..
T Consensus 105 -----~~~~~~~~--~G~GL~Li~~L~D~v~~~----~-~~G~~l~l~k 141 (159)
T TIGR01924 105 -----EPIDDLRE--GGLGLFLIETLMDEVEVY----E-DSGVTVAMTK 141 (159)
T ss_pred -----CCcccCCC--CccCHHHHHHhccEEEEE----e-CCCEEEEEEE
Confidence 00111122 378887777788888411 1 3578777763
No 88
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=78.23 E-value=1.4 Score=52.57 Aligned_cols=49 Identities=27% Similarity=0.366 Sum_probs=37.7
Q ss_pred CCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEec-CCCcEEEEEeCCCCCCHHHHHH
Q 004236 102 SHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVD 168 (766)
Q Consensus 102 s~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~el~~ 168 (766)
.+....+||||-||.||-. -.|+|.++ -.-..|.|.|||-|++..+..-
T Consensus 19 ~sl~sAVKELvENSiDAGA------------------T~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~ 68 (672)
T KOG1978|consen 19 TSLVSAVKELVENSIDAGA------------------TAIDIKVKDYGSDSIEVSDNGSGISATDFEG 68 (672)
T ss_pred ccHHHHHHHHHhcCcccCC------------------ceeeEecCCCCcceEEEecCCCCCCccchhh
Confidence 3456899999999999963 23666653 2447899999999999988764
No 89
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=75.68 E-value=6.8 Score=45.23 Aligned_cols=56 Identities=25% Similarity=0.289 Sum_probs=38.4
Q ss_pred CCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecC--CCcEEEEEeCCCCCCHHHHHH
Q 004236 101 YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--ENGTITITDTGIGMTKEELVD 168 (766)
Q Consensus 101 Ys~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~l~I~DnGiGMt~~el~~ 168 (766)
|-+|...|-=||-||.-|.-+.+ .+...|.|..-. ..-.+.|.|||+||++.-...
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~~------------~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEPK------------RPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred ccCchHHHhHHHHHHHHHhcccC------------CCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 45666777778999999884321 234456665532 335679999999999988754
No 90
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=74.93 E-value=9.5 Score=37.50 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=34.9
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCC
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMT 162 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt 162 (766)
.+.+-|++.||..+--+ ...+...+.|....+.+.-.++|+|.|.|+.
T Consensus 42 ~~av~E~~~N~v~Ha~~----------~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~ 89 (146)
T COG2172 42 AIAVSEALTNAVKHAYK----------LDPSEGEIRIEVSLDDGKLEIRIWDQGPGIE 89 (146)
T ss_pred HHHHHHHHHHHHHHHhh----------cCCCCceEEEEEEEcCCeEEEEEEeCCCCCC
Confidence 57889999999987632 1122356777777777778899999996653
No 91
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=72.53 E-value=6 Score=45.59 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=57.3
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecC---CCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP---ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~ 183 (766)
.+--||-||+|||. ...+.|.|..+. +.-.|-|.|||-|-+.+-+.+.|.- -.+++
T Consensus 568 VlvNl~~NaldA~~---------------h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~P-FttsK----- 626 (673)
T COG4192 568 VLVNLIVNALDAST---------------HFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTP-FTTSK----- 626 (673)
T ss_pred HHHHHHHHHHhhhc---------------cCCceEEEEeecCcccceEEEEecCCCCCchhHHHHhcCC-ccccc-----
Confidence 34458899999994 123678888765 3467999999999998777664432 22211
Q ss_pred HhhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecCCC
Q 004236 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKEDD 238 (766)
Q Consensus 184 ~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~~~ 238 (766)
-+| .|+|+--|-.+-++.. +..-.....+|.-|+|.++-+.
T Consensus 627 -------------~vg-LGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v~~ 668 (673)
T COG4192 627 -------------EVG-LGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQVDE 668 (673)
T ss_pred -------------ccc-cccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEeecc
Confidence 122 4566532222222221 1112334578888888887653
No 92
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=70.24 E-value=4.5 Score=45.16 Aligned_cols=79 Identities=23% Similarity=0.384 Sum_probs=47.5
Q ss_pred ceEEEEecCCC--cEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE
Q 004236 139 LEIRIKPDPEN--GTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE 216 (766)
Q Consensus 139 ~~I~I~~d~~~--~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve 216 (766)
.+|.+...... -.|.|.|+|+|++++++.+-|-..-+-. .+.....|.-|+|++ +|.++.
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvd--------------kARsR~~gGTGLGLa----IakeiV 423 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVD--------------KARSRKMGGTGLGLA----IAKEIV 423 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhh--------------hhhhhcCCCCchhHH----HHHHHH
Confidence 35555554333 4579999999999999988664321110 123356788899976 344442
Q ss_pred e--cC---CCcCCCCceEEEEEec
Q 004236 217 E--TD---PEKLLKRGTQITLYLK 235 (766)
Q Consensus 217 s--~~---~~~~~~~GT~I~L~Lk 235 (766)
. -| .....+.||+|+..|-
T Consensus 424 ~~hgG~iWA~s~~gkgtt~~ftLP 447 (459)
T COG5002 424 QAHGGRIWAESEEGKGTTFSFTLP 447 (459)
T ss_pred HHhCCeEEEecccCCceEEEEEec
Confidence 1 01 0011378999988873
No 93
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=67.79 E-value=5.9 Score=46.04 Aligned_cols=25 Identities=24% Similarity=0.516 Sum_probs=16.8
Q ss_pred ceEEEEec-CCCcEEEEEeCCCCCCH
Q 004236 139 LEIRIKPD-PENGTITITDTGIGMTK 163 (766)
Q Consensus 139 ~~I~I~~d-~~~~~l~I~DnGiGMt~ 163 (766)
+.|.+..+ ...-.|.|.|||+||+.
T Consensus 492 i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 492 IAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred EEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 44554444 23346899999999985
No 94
>PRK13559 hypothetical protein; Provisional
Probab=62.77 E-value=8.3 Score=42.12 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=26.5
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEe--cC--CCcEEEEEeCCCCCCHH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DP--ENGTITITDTGIGMTKE 164 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~--~~~~l~I~DnGiGMt~~ 164 (766)
.+.|||.||..+- .++ .....|+|.. .. ..-.|.+.|||.|+..+
T Consensus 271 vl~nLi~NA~k~~------~~~-------~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 271 VLHELAVNAIKHG------ALS-------ADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHhHHHhc------ccc-------CCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 6778888886552 110 1223455544 32 23467889999996543
No 95
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=62.24 E-value=28 Score=38.88 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=56.9
Q ss_pred CCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHH
Q 004236 102 SHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (766)
Q Consensus 102 s~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f 181 (766)
+...+.|--.+|.|.--+++ + .....+.|.+.-+.+.-+++|+|||.|++..+...-..-||=-.-+
T Consensus 354 ~e~~talyRv~QEaltNIEr--H---------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~~~~GiGLRNMr-- 420 (459)
T COG4564 354 PEVATALYRVVQEALTNIER--H---------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQKRHGIGLRNMR-- 420 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHh--h---------cCCeEEEEEeccCCcceEEEEecCCCCccchhhccCccccccccHH--
Confidence 33445555677777777763 1 1122334444445566789999999999988877655444322111
Q ss_pred HHHhhhcccCCCCCCcccccccceeeeeeecceeEecCCCcCCCCceEEEEEecCCCc
Q 004236 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVEETDPEKLLKRGTQITLYLKEDDK 239 (766)
Q Consensus 182 ~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves~~~~~~~~~GT~I~L~Lk~~~~ 239 (766)
..+-+|| |-+ .|+| .+.||.++..|.-+..
T Consensus 421 --------------ERma~~G-G~~-------~v~s------~p~GTel~v~Lp~~~~ 450 (459)
T COG4564 421 --------------ERMAHFG-GEL-------EVES------SPQGTELTVLLPLDAS 450 (459)
T ss_pred --------------HHHHHhC-ceE-------EEEe------cCCCcEEEEEecchhh
Confidence 1234444 211 2322 2569999999987654
No 96
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=59.23 E-value=11 Score=45.04 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.0
Q ss_pred ceEEEEe--cCCCcEEEEEeCCCCCCHHHHHHhhhh
Q 004236 139 LEIRIKP--DPENGTITITDTGIGMTKEELVDCLGT 172 (766)
Q Consensus 139 ~~I~I~~--d~~~~~l~I~DnGiGMt~~el~~~L~t 172 (766)
..|.|.. -++..++.|.|||+|++.+-+.+-|.-
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~i 692 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVI 692 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHH
Confidence 5566664 346689999999999999988776543
No 97
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=57.06 E-value=6.1 Score=48.37 Aligned_cols=111 Identities=23% Similarity=0.263 Sum_probs=60.2
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
-.+-|||-||.|=+..+.-. ..-..+...-+..|+...-..++ |.|+|.||..+-+..++.....+ +.+
T Consensus 149 ~a~aeLldnalDEi~~~~tf--~~vd~I~p~~d~~i~a~~v~~~~---~s~~gg~~~~~~i~~~m~l~~~~-k~e----- 217 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGATF--VRVDYINPVMDIFIRALVVQLKR---ISDDGGGMKPEVIRKCMSLGYSS-KKE----- 217 (775)
T ss_pred Chhhhhccccccccccccce--EEeeeecccccccceeEEeeccc---eeccccccCHHHHHHHHHhhhhh-hhh-----
Confidence 46889999999987543211 00000000111111111111111 67899999999999988654433 221
Q ss_pred hhcccCCCCCCcccccccceeeeeee--cceeE-ecCCCcCCCCceEEEEEec
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLV--AQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmv--ad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
-...|||+|.||.++-|= |+-+. +.-...+...+|+.+..|.
T Consensus 218 --------~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls 262 (775)
T KOG1845|consen 218 --------ANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLS 262 (775)
T ss_pred --------hhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEE
Confidence 125799999999987663 22222 2212334456677766664
No 98
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=44.89 E-value=39 Score=39.51 Aligned_cols=103 Identities=28% Similarity=0.380 Sum_probs=61.5
Q ss_pred ccchhhhHHHHHHHHHHcC--------------CCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecC
Q 004236 82 KFEYQAEVSRLMDLIVHSL--------------YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP 147 (766)
Q Consensus 82 ~~~Fqae~~~ll~ll~~~L--------------Ys~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~ 147 (766)
.+-++. .++|+.+..++ +.-|...|||+|.||.=+-| | +. ....+.|.|..
T Consensus 237 ~l~~~v--~~~i~fikrn~~~~~~v~~l~r~~v~dyP~~alREai~NAv~HRD---Y---s~-----~~~~v~I~iyd-- 301 (467)
T COG2865 237 NLPEQV--ERAISFIKRNLNVPYVVEGLRRVEVWDYPLEALREAIINAVIHRD---Y---SI-----RGRNVHIEIYD-- 301 (467)
T ss_pred CHHHHH--HHHHHHHHHhcCCceeecceeEeecccCCHHHHHHHHHHHHHhhc---c---cc-----CCCceEEEEEC--
Confidence 344444 37888777652 33467899999999985432 2 11 12245555553
Q ss_pred CCcEEEEEeCC---CCCCHHHHHHhhhhhhccCcHH-HHHHhhhcccCCCCCCcccccccceeeeeeec
Q 004236 148 ENGTITITDTG---IGMTKEELVDCLGTIAQSGTSK-FLKALKENNDLGADNGLIGQFGVGFYSAFLVA 212 (766)
Q Consensus 148 ~~~~l~I~DnG---iGMt~~el~~~L~tIa~Sg~~~-f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmva 212 (766)
.+|.|.-.| .||+.+++.++ +|=.++ -+..+= .+..+|-+.|.|+==.|-.+
T Consensus 302 --DRieI~NPGgl~~gi~~~~l~~~-----~s~~RNp~LA~~l------~~~~liE~~GSGi~rm~~~~ 357 (467)
T COG2865 302 --DRIEITNPGGLPPGITPEDLLKG-----RSKSRNPVLAKVL------RDMGLIEERGSGIRRMFDLM 357 (467)
T ss_pred --CeEEEECCCCCCCCCChhHcccC-----CCcccCHHHHHHH------HHhhhHHHhCccHHHHHHHH
Confidence 389999877 59999998763 332221 111111 24578889999975444333
No 99
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=41.24 E-value=46 Score=32.80 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=45.5
Q ss_pred ChHHHHHHHhhhcCCCchHHHHHHHHHhHH----HHHhCCC-CCCCHHHHHHHHHHHHHHHhCCCCCC
Q 004236 661 HPIVKDLNAACKNAPDSTDAKRAVDLLYDT----ALISSGF-TPDSPADLGNKIYEMMAMALGGRWGR 723 (766)
Q Consensus 661 HPLIk~L~~~~~~~~~~~~~~~lv~lLyd~----AlL~sG~-~ledp~~f~~ri~~Ll~~~L~~~~~~ 723 (766)
||.|+.|.++++. ++.+..++..+|++ +-=.+.. .+.|-..|..-++.+|..|-. +..
T Consensus 2 ~p~vqefk~lIe~---dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~--~~~ 64 (141)
T PF12588_consen 2 HPVVQEFKDLIES---DPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPE--FSD 64 (141)
T ss_pred ChHHHHHHHHHhc---CHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhCCc--ccc
Confidence 8999999999864 57899999999999 2222223 468889999999999988766 655
No 100
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=32.36 E-value=56 Score=32.35 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=18.2
Q ss_pred EEECCCChHHHHHHHhhhcCCCc
Q 004236 655 LEINPDHPIVKDLNAACKNAPDS 677 (766)
Q Consensus 655 LEINp~HPLIk~L~~~~~~~~~~ 677 (766)
=+.+|+||||.+|..+...|-.+
T Consensus 16 E~d~p~~plv~~~~~L~q~Nms~ 38 (147)
T PF06112_consen 16 EADYPNHPLVAKLQALPQNNMSD 38 (147)
T ss_pred cccCCCCHHHHHHHhhccCCCCH
Confidence 36899999999999987655433
No 101
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=29.77 E-value=1e+02 Score=27.24 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=48.8
Q ss_pred ceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCH-HHHhcCcchHHHhhcCceEEecCCcchHHHHHHHhhccCccee
Q 004236 487 RFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSL-KSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFV 565 (766)
Q Consensus 487 rF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~-~~~~~SP~lE~~~~kG~EVL~l~dpiDE~~lq~L~ey~gk~f~ 565 (766)
||+|+. .+.++..... ..+.+|-+.|.+. +.+..+|+. ...|..|||..+.+++.+...|+....+++.
T Consensus 8 RyeTs~------~va~~~~~~~-~~~~v~ia~g~~~~Dalsa~~~a---~~~~~PIll~~~~l~~~~~~~l~~~~~~~v~ 77 (92)
T PF04122_consen 8 RYETSA------KVAKKFYPDN-KSDKVYIASGDNFADALSASPLA---AKNNAPILLVNNSLPSSVKAFLKSLNIKKVY 77 (92)
T ss_pred HHHHHH------HHHHHhcccC-CCCEEEEEeCcchhhhhhhHHHH---HhcCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 666663 2334433322 4567999999875 444445543 4578899999999999999999988766666
Q ss_pred ecc
Q 004236 566 DIS 568 (766)
Q Consensus 566 ~V~ 568 (766)
-|.
T Consensus 78 iiG 80 (92)
T PF04122_consen 78 IIG 80 (92)
T ss_pred EEC
Confidence 553
No 102
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=28.18 E-value=65 Score=36.57 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=20.8
Q ss_pred CCCceEEEEecCCCcEEEEEeCCCCCCH
Q 004236 136 AGDLEIRIKPDPENGTITITDTGIGMTK 163 (766)
Q Consensus 136 ~~~~~I~I~~d~~~~~l~I~DnGiGMt~ 163 (766)
...+.|.+..+.+.-.+.|.|||+|++-
T Consensus 428 AS~V~i~l~~~~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 428 ASAVTIQLWQQDERLMLEIEDDGSGLPP 455 (497)
T ss_pred cceEEEEEeeCCcEEEEEEecCCcCCCC
Confidence 3456777777666567899999999653
No 103
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.29 E-value=78 Score=26.20 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=36.8
Q ss_pred ceeeccCC-CcccCHHHHHHhcccCCCeEEEEecCCHHHHhcC-cchHHHhhcCceEEecC
Q 004236 487 RFYTSKSE-EELISLDEYVENMGEKQNAIYYLATDSLKSAKSA-PFLEKLVQKDIEVLYLI 545 (766)
Q Consensus 487 rF~Ts~~~-~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~S-P~lE~~~~kG~EVL~l~ 545 (766)
..||..|. ++.+++++|+.+.++..=...-+|.-+ .+... ++.+..++.|+.||.-.
T Consensus 3 H~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~--~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 3 HVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHG--NLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred ccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCC--cccCHHHHHHHHHHcCCeEEEEE
Confidence 45676664 567899999999887655566666544 22222 34566677788887643
No 104
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=22.38 E-value=3.9e+02 Score=29.31 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=15.9
Q ss_pred eEEecCC-----cchHHHHHHHhhccCcceeec
Q 004236 540 EVLYLIE-----PIDEVAIQNLQTFNEKKFVDI 567 (766)
Q Consensus 540 EVL~l~d-----piDE~~lq~L~ey~gk~f~~V 567 (766)
.|+|++| -+|-.++..++++...-..-|
T Consensus 153 ~VlYl~DNaGEi~FD~vlie~ik~~~~~vv~vV 185 (285)
T COG1578 153 SVLYLTDNAGEIVFDKVLIEVIKELGKKVVVVV 185 (285)
T ss_pred cEEEEecCCccHHHHHHHHHHHHhcCCceEEEE
Confidence 4444444 357777777777754443333
No 105
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=21.46 E-value=39 Score=41.70 Aligned_cols=19 Identities=26% Similarity=0.615 Sum_probs=16.0
Q ss_pred EEEEeCCCCCCHHHHHHhh
Q 004236 152 ITITDTGIGMTKEELVDCL 170 (766)
Q Consensus 152 l~I~DnGiGMt~~el~~~L 170 (766)
|...|+|.||+.+++...+
T Consensus 2 l~~~Ddg~Gms~d~a~~~~ 20 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAI 20 (775)
T ss_pred cccccCCCCcCchhhhhhh
Confidence 5678999999999987744
Done!