Query 004236
Match_columns 766
No_of_seqs 247 out of 1593
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 18:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 1E-167 4E-172 1447.8 44.0 629 80-718 3-677 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 3E-154 9E-159 1336.2 55.9 611 79-724 21-664 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 2E-148 8E-153 1283.2 42.7 591 80-714 4-623 (624)
4 1y4s_A Chaperone protein HTPG; 100.0 2E-134 6E-139 1155.2 29.7 526 80-639 4-558 (559)
5 3q6m_A Heat shock protein HSP 100.0 2E-126 6E-131 1052.8 38.3 434 312-753 3-442 (448)
6 3hjc_A Heat shock protein 83-1 100.0 3E-125 1E-129 1046.4 40.0 415 304-724 11-427 (444)
7 2cge_A ATP-dependent molecular 100.0 3E-119 1E-123 994.4 42.1 402 312-718 1-405 (405)
8 1hk7_A Heat shock protein HSP8 100.0 2.9E-93 9.9E-98 749.3 25.3 286 312-602 1-288 (288)
9 2gq0_A Chaperone protein HTPG; 100.0 4.6E-92 1.6E-96 744.8 22.6 290 312-623 2-295 (303)
10 3pry_A Heat shock protein HSP 100.0 1.2E-89 4.2E-94 716.2 23.9 263 310-576 1-263 (268)
11 1usu_A Heat shock protein HSP8 100.0 5.6E-89 1.9E-93 709.2 23.5 257 310-570 1-257 (260)
12 1y6z_A Heat shock protein, put 100.0 1.1E-86 3.6E-91 695.7 20.2 260 310-571 1-263 (263)
13 3peh_A Endoplasmin homolog; st 100.0 5.4E-57 1.8E-61 474.8 18.0 229 78-310 21-281 (281)
14 3ied_A Heat shock protein; HSP 100.0 8.5E-53 2.9E-57 434.8 13.5 185 78-267 22-271 (272)
15 1qy5_A Endoplasmin; GRP94, NEC 100.0 6.1E-52 2.1E-56 436.7 14.6 231 79-310 4-269 (269)
16 3nmq_A Heat shock protein HSP 100.0 3.1E-51 1E-55 423.2 17.5 188 79-271 15-225 (239)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 8.8E-47 3E-51 393.5 16.9 196 79-279 36-254 (256)
18 3t0h_A Heat shock protein HSP 100.0 3.3E-45 1.1E-49 377.2 17.3 195 79-278 8-225 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 2.4E-44 8.2E-49 373.0 15.3 189 80-269 9-221 (236)
20 1yc1_A HSP 86, heat shock prot 100.0 2.6E-41 8.9E-46 355.3 16.9 194 79-277 44-260 (264)
21 2wer_A ATP-dependent molecular 100.0 4.4E-41 1.5E-45 345.0 17.5 190 80-274 3-216 (220)
22 2ior_A Chaperone protein HTPG; 100.0 1.2E-36 4E-41 315.2 13.0 187 79-268 23-233 (235)
23 1sf8_A Chaperone protein HTPG; 100.0 1.8E-32 6.1E-37 257.6 12.6 114 591-714 12-125 (126)
24 1b63_A MUTL; DNA mismatch repa 99.4 1.6E-13 5.6E-18 148.7 8.4 132 98-257 19-182 (333)
25 1h7s_A PMS1 protein homolog 2; 99.0 5.9E-11 2E-15 130.2 3.2 145 88-259 14-195 (365)
26 3h4l_A DNA mismatch repair pro 98.8 1.1E-09 3.9E-14 120.0 1.5 127 100-257 22-183 (367)
27 3na3_A DNA mismatch repair pro 98.7 5.7E-09 2E-13 113.6 3.4 135 92-257 16-186 (348)
28 3fv5_A DNA topoisomerase 4 sub 98.3 6E-07 2.1E-11 90.6 7.3 139 104-267 18-190 (201)
29 1mu5_A Type II DNA topoisomera 98.3 2E-07 6.9E-12 105.4 4.1 124 106-256 35-196 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.3 3.8E-07 1.3E-11 104.5 5.6 124 106-256 34-195 (530)
31 1kij_A DNA gyrase subunit B; t 98.2 5.3E-07 1.8E-11 99.7 4.8 135 105-267 34-205 (390)
32 1s16_A Topoisomerase IV subuni 97.8 2.3E-05 8E-10 86.6 7.7 135 105-267 33-204 (390)
33 2q2e_B Type 2 DNA topoisomeras 97.8 9.2E-06 3.2E-10 94.5 4.4 134 105-267 39-212 (621)
34 4duh_A DNA gyrase subunit B; s 97.7 4.2E-05 1.4E-09 78.2 6.7 136 105-268 37-208 (220)
35 1ei1_A DNA gyrase B, GYRB; ATP 97.7 5.1E-05 1.8E-09 83.8 7.8 136 104-267 35-206 (391)
36 4emv_A DNA topoisomerase IV, B 97.6 0.00011 3.9E-09 75.3 7.8 137 106-268 43-214 (226)
37 3jz3_A Sensor protein QSEC; he 97.3 7E-05 2.4E-09 73.5 2.7 96 106-236 120-216 (222)
38 1zxm_A TOPO IIA ATPase, DNA to 97.3 0.00021 7.1E-09 79.2 6.5 88 106-216 55-150 (400)
39 3cwv_A DNA gyrase, B subunit, 97.3 0.00041 1.4E-08 76.1 8.8 47 105-167 32-78 (369)
40 3lnu_A Topoisomerase IV subuni 97.2 0.00031 1.1E-08 77.9 6.8 139 105-267 52-223 (408)
41 1id0_A PHOQ histidine kinase; 97.2 8.8E-05 3E-09 68.9 2.0 97 106-236 47-144 (152)
42 4ew8_A Sensor protein DIVL; si 97.2 0.00019 6.4E-09 72.9 4.4 97 106-236 158-255 (268)
43 2btz_A Pyruvate dehydrogenase 97.2 0.00028 9.7E-09 77.2 5.7 116 106-237 234-350 (394)
44 1th8_A Anti-sigma F factor; SP 97.2 0.00021 7.3E-09 66.4 3.9 97 106-236 42-138 (145)
45 1ysr_A Sensor-type histidine k 97.2 0.00017 5.7E-09 67.1 3.0 97 107-235 50-147 (150)
46 3d36_A Sporulation kinase B; G 97.1 0.00018 6.1E-09 71.7 3.3 98 106-236 126-224 (244)
47 3sl2_A Sensor histidine kinase 97.1 7.9E-05 2.7E-09 71.5 0.5 101 107-235 47-150 (177)
48 3a0y_A Sensor protein; ATP-LID 97.1 0.00014 4.8E-09 67.2 2.2 96 107-236 51-147 (152)
49 2q8g_A [pyruvate dehydrogenase 97.1 0.00032 1.1E-08 77.2 5.0 116 106-236 246-362 (407)
50 2e0a_A Pyruvate dehydrogenase 97.1 0.00034 1.2E-08 76.6 4.7 116 106-236 233-349 (394)
51 1i58_A Chemotaxis protein CHEA 97.0 0.00013 4.6E-09 70.7 0.8 55 108-167 52-109 (189)
52 1gkz_A [3-methyl-2-oxobutanoat 97.0 0.00026 9E-09 77.2 2.7 121 106-236 241-372 (388)
53 1y8o_A [pyruvate dehydrogenase 96.9 0.00037 1.3E-08 77.1 3.7 117 106-236 256-373 (419)
54 1bxd_A ENVZ(290-450), protein 96.9 0.00018 6.3E-09 67.7 0.6 98 107-236 51-149 (161)
55 2c2a_A Sensor histidine kinase 96.8 0.00039 1.3E-08 70.5 2.0 105 106-237 141-248 (258)
56 3ehh_A Sensor kinase (YOCF pro 96.8 0.00063 2.1E-08 66.9 3.4 45 107-166 134-178 (218)
57 3ehg_A Sensor kinase (YOCF pro 96.8 0.00038 1.3E-08 63.5 1.6 45 107-166 44-88 (128)
58 3a0r_A Sensor protein; four he 96.5 0.00088 3E-08 70.3 2.7 96 107-236 248-344 (349)
59 1r62_A Nitrogen regulation pro 96.4 0.00047 1.6E-08 64.1 -0.2 95 107-234 52-156 (160)
60 3zxo_A Redox sensor histidine 96.4 0.00047 1.6E-08 62.3 -0.5 43 107-165 47-89 (129)
61 1pvg_A DNA topoisomerase II; G 96.2 0.0061 2.1E-07 67.9 7.3 47 106-165 67-113 (418)
62 1b3q_A Protein (chemotaxis pro 96.1 0.0037 1.3E-07 68.3 5.0 52 108-167 111-168 (379)
63 4gfh_A DNA topoisomerase 2; to 94.5 0.061 2.1E-06 66.9 8.4 43 107-163 63-106 (1177)
64 3ttz_A DNA gyrase subunit B; p 94.4 0.033 1.1E-06 55.8 5.0 45 105-164 33-77 (198)
65 3zxq_A Hypoxia sensor histidin 94.4 0.017 5.8E-07 51.6 2.5 43 107-165 43-85 (124)
66 4fpp_A Phosphotransferase; fou 94.4 0.0095 3.2E-07 60.8 0.9 78 136-234 165-245 (247)
67 3ke6_A Protein RV1364C/MT1410; 82.2 1.1 3.6E-05 49.1 4.8 85 105-235 299-384 (399)
68 1ixm_A SPO0B, protein (sporula 71.5 2.4 8.3E-05 42.0 3.4 54 109-170 111-166 (192)
69 2lnd_A De novo designed protei 40.7 56 0.0019 28.0 6.0 57 499-559 39-98 (112)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-167 Score=1447.81 Aligned_cols=629 Identities=46% Similarity=0.796 Sum_probs=547.9
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCC
Q 004236 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (766)
Q Consensus 80 ~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (766)
.|+|+||||+++||+||+++||||+++|||||||||+||++|+||+++++++.+....++.|+|.+|+++++|+|+||||
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 82 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999998888888999999998889999999999
Q ss_pred CCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC------
Q 004236 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD------ 219 (766)
Q Consensus 160 GMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~------ 219 (766)
|||++||.++|++||.||++.|+++++ .+.+...||||||||||+||||++|+ +++
T Consensus 83 GMt~edl~~~l~tIA~Sgt~~f~~kl~----~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti 158 (677)
T 2cg9_A 83 GMTKAELINNLGTIAKSGTKAFMEALS----AGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTV 158 (677)
T ss_dssp CCCHHHHHGGGSSSSSCTTHHHHSCCC----SSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEE
T ss_pred CCCHHHHHHHHHhHhccccHHHHHhhh----cccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEE
Confidence 999999999999999999999998887 33567899999999999999999996 111
Q ss_pred -C---CcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCC------------CC
Q 004236 220 -P---EKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP------------EE 283 (766)
Q Consensus 220 -~---~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~------------~~ 283 (766)
+ +...++||+|+|||+++.. +|++.++|+++|++||+||+|||+++.+++.++++++++++ ++
T Consensus 159 ~~~~~~~~~~~GT~I~L~Lk~d~~-e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~~~ 237 (677)
T 2cg9_A 159 TLDEVNERIGRGTILRLFLKDDQL-EYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDE 237 (677)
T ss_dssp EECCSSCCCSSEEEEEEEECTTGG-GGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC---------------------
T ss_pred eecCCCCCCCCCeEEEEEEcchhh-ccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhccccccccccccc
Confidence 1 2456899999999999998 99999999999999999999999998766654554322110 00
Q ss_pred ---CCCCcc-c---cccccccccccccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceee
Q 004236 284 ---GEEQPE-G---EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEF 356 (766)
Q Consensus 284 ---~~~~~~-~---~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f 356 (766)
+..+++ + ++++++|++++.+++|++||+++|||+|+|++||+|||.+|||+++|+|++||+|+||++||+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~~~~ 317 (677)
T 2cg9_A 238 DDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEF 317 (677)
T ss_dssp ------------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSSSCE
T ss_pred cccccccccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEecccccceE
Confidence 000111 1 133556777788899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCCCccccccccccCeEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHH
Q 004236 357 RSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKR 436 (766)
Q Consensus 357 ~~llyiP~~~p~~~~~~~~~~~~~ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~ 436 (766)
+||||||+++||++|+ +.+.+++|+||||||||||+|+ +|||+||+||||||||+|||||||||+||+|++|++||++
T Consensus 318 ~~lLyiP~~ap~d~~~-~~~~~~~ikLYv~rVfI~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~ 395 (677)
T 2cg9_A 318 RAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVFITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKN 395 (677)
T ss_dssp EEEEEECSSCCC----------CCSEEEETTEEEEECST-TTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHH
T ss_pred EEEEEEcCCCchhhhh-hhhccCCeEEEEeeeEeecChh-hhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHH
Confidence 9999999999999986 3446799999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEE
Q 004236 437 LVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYY 516 (766)
Q Consensus 437 l~~kvl~~L~~la~~~d~e~Y~kF~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYY 516 (766)
|++||+++|.+|| +|+++|++||++||++||+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||
T Consensus 396 l~kkvl~~l~~la--~~~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY 473 (677)
T 2cg9_A 396 IVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYY 473 (677)
T ss_dssp HHHHHHHHHHHHH--SCSHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCEEEE
T ss_pred HHHHHHHHHHHHH--hCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCceEEE
Confidence 9999999999999 57899999999999999999999999999999999999999877899999999999999999999
Q ss_pred EecCCHHHHhcCcchHHHhhcCceEEecCCcchHHHHHHHhhccCcceeeccccccCCCCchhHhH--HhhHHHHHHHHH
Q 004236 517 LATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCD 594 (766)
Q Consensus 517 i~~~s~~~~~~SP~lE~~~~kG~EVL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~eee~~--e~~~~~f~~L~~ 594 (766)
++|+|++++++|||+|.|+++|||||||++||||+||++|.+|+|++|++|+++ ++|++.+++++ ++.+++|++||+
T Consensus 474 ~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~~e~~~~~~~~~~~~~~~L~~ 552 (677)
T 2cg9_A 474 ITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTK 552 (677)
T ss_dssp EECSCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCSSTTSSTTHHHHHGGGHHHHH
T ss_pred EeCCCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-cccccchhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 99876544333 456778999999
Q ss_pred HHHHHhCCceeEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHhhhcC
Q 004236 595 WIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNA 674 (766)
Q Consensus 595 ~lK~~L~~kV~~V~vS~RL~~sP~~lv~se~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~ 674 (766)
|||++|+++|.+|++|+||++||||||++++|||++|+|||++|+++++++.++|.++++|||||+||||++|..+...+
T Consensus 553 ~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~~LeiNp~hpli~~L~~~~~~d 632 (677)
T 2cg9_A 553 ALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEG 632 (677)
T ss_dssp HHHHTTCSSCSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC-------------CEEEECTTCHHHHHHHHHHHTC
T ss_pred HHHHhcCCcceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhccccccccccccCceEEEcCCCHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999877776667788999999999999999999876654
Q ss_pred -CCchHHHHHHHHHhHHHHHhCCCCCCCHHHHHHHHHHHHHHHhC
Q 004236 675 -PDSTDAKRAVDLLYDTALISSGFTPDSPADLGNKIYEMMAMALG 718 (766)
Q Consensus 675 -~~~~~~~~lv~lLyd~AlL~sG~~ledp~~f~~ri~~Ll~~~L~ 718 (766)
++++.++++|++||+||||++|++++||+.|++|+++||.++||
T Consensus 633 ~~~~~~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~~~l~ 677 (677)
T 2cg9_A 633 GAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677 (677)
T ss_dssp CSSCSSSSTTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTSSSSCC
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcC
Confidence 45667999999999999999999999999999999999987664
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=2.7e-154 Score=1336.19 Aligned_cols=611 Identities=49% Similarity=0.870 Sum_probs=519.0
Q ss_pred CccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 004236 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (766)
Q Consensus 79 ~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (766)
..|+++||+|+++||+||+++||||+++|||||||||+||++|+||+++++++.+....++.|+|.+|+++++|+|+|||
T Consensus 21 ~~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnG 100 (666)
T 2o1u_A 21 MSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 100 (666)
T ss_dssp -------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECC
Confidence 35899999999999999999999999999999999999999999999999999887788899999999989999999999
Q ss_pred CCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCC-CCCCcccccccceeeeeeecceeE--------------ecC----
Q 004236 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLG-ADNGLIGQFGVGFYSAFLVAQKVE--------------ETD---- 219 (766)
Q Consensus 159 iGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~-~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~---- 219 (766)
+|||++||.++|++||.||++.|+++++.....+ .+...||||||||||+||||++|+ +++
T Consensus 101 iGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~t 180 (666)
T 2o1u_A 101 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFS 180 (666)
T ss_dssp CCCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCCE
T ss_pred CCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeEE
Confidence 9999999999999999999999999887310001 466799999999999999999996 111
Q ss_pred --CC---cCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCCCCCCCCccccccc
Q 004236 220 --PE---KLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKT 294 (766)
Q Consensus 220 --~~---~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 294 (766)
+. +..++||+|+|||+++.. +|++.++|+++|++||+||+|||+++.+++.+ |
T Consensus 181 i~~~~~~~~~~~GT~I~L~Lk~d~~-Efle~~~I~~ivkkys~fi~~PI~~~~~~~~~-----------~---------- 238 (666)
T 2o1u_A 181 VIADPRGNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSKTGG-----------G---------- 238 (666)
T ss_dssp EEECTTCCSSSSEEEEEEEECTTTT-TSSSTTHHHHHHHHHSTTCCSCEEEEECC-------------------------
T ss_pred EEecccCCCCCCCeEEEEEEccchh-hhccHHHHHHHHHHHHhhCCCceEEecccccc-----------c----------
Confidence 11 135799999999999998 99999999999999999999999997753210 0
Q ss_pred cccccccccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCccccc
Q 004236 295 KKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIM 374 (766)
Q Consensus 295 ~~k~~~~~~~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~ 374 (766)
++.+++|+.+|+.+|||+++++++++|+|.+||++++++|++||+|+|+++||+++|+|+||+|+++||+++. .
T Consensus 239 -----~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~eg~~~~~gll~iP~~~p~d~~~-~ 312 (666)
T 2o1u_A 239 -----GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFD-E 312 (666)
T ss_dssp --------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEECSSSCEEEEEEECSSCCC------
T ss_pred -----cccccceEEEecCccccccCcccccHHHHHHHHhhhccccccCeeEEEecccCcEEEEEEEEcCCCCchhhhh-h
Confidence 0123579999999999999999999999999999999999999999999999999999999999999999885 2
Q ss_pred c--ccccCeEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhcc
Q 004236 375 N--PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSE 452 (766)
Q Consensus 375 ~--~~~~~ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~ 452 (766)
. ..+++|+||||||||+|+|+ +|||+||+||+|||||+|||||||||+||+|++|++||+.|++||+++|.+|+ +
T Consensus 313 ~~~~~~~~i~LYVn~vfI~d~~~-~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~--~ 389 (666)
T 2o1u_A 313 YGSKKSDYIKLYVRRVFITDDFH-DMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIA--D 389 (666)
T ss_dssp -------CEEEEETTEEEESCCC-TTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHHHHHHHHHHHHHHHHHSC--H
T ss_pred ccccccCCeEEEEcCeEeeCchh-hhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 1 35789999999999999999 99999999999999999999999999999999999999999999999999999 3
Q ss_pred CHHHHH-HHHHHHhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcch
Q 004236 453 NKEDYK-KFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFL 531 (766)
Q Consensus 453 d~e~Y~-kF~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~l 531 (766)
++|+ +||++||++||+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+
T Consensus 390 --e~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~ 467 (666)
T 2o1u_A 390 --EKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFV 467 (666)
T ss_dssp --HHHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEETTSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGG
T ss_pred --HHHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhhCcHH
Confidence 8999 9999999999999999999999999999999998777899999999999999999999999999999999999
Q ss_pred HHHhhcCceEEecCCcchHHHHHHHhhccCcceeeccccccCCCCchhHhH--HhhHHHHHHHHHHHHHH-hCCceeEEE
Q 004236 532 EKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQ-LGDKVAKVQ 608 (766)
Q Consensus 532 E~~~~kG~EVL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~eee~~--e~~~~~f~~L~~~lK~~-L~~kV~~V~ 608 (766)
|.|++||||||||+||||||||++|.+|+|++|++|++++++|++.+++++ ++.+++|++||+|||++ |+++|++|+
T Consensus 468 e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~k~~~L~~~v~~V~ 547 (666)
T 2o1u_A 468 ERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDKIEKAV 547 (666)
T ss_dssp HHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHTTTTTTEEEEE
T ss_pred HHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEecccccccccchhhhhhhhhhHHhHHHHHHHHHhccCCCceeEEE
Confidence 999999999999999999999999999999999999999999987655443 45678999999999999 999999999
Q ss_pred EeecCCCCCEEEEeCCCCccHHHHHHHHHHhc--C-CCCccccccCceeEEECCCChHHHHHHHhhhcCCCchHHHHHHH
Q 004236 609 VSKRLSSSPCVLVSGKFGWSANMERLMKAQAL--G-DTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVD 685 (766)
Q Consensus 609 vS~RL~~sP~~lv~se~g~s~~Merimkaq~~--~-d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~~~~~~~lv~ 685 (766)
+|+||++||||||++++|||++|||||++|++ + ++++..+|.++++|||||+||||++|.++.+.+++++.++++|+
T Consensus 548 ~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~~~~~~~~~~~~~~~~ 627 (666)
T 2o1u_A 548 VSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVSDLAV 627 (666)
T ss_dssp ECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHHTSCCCCSCSSSSCCEEEEECTTSHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred EeecCCCCCeEEEecCcccCHHHHHHHHHhhhhcccCcccccccccCeeeEECCCCHHHHHHHHhhhcccchHHHHHHHH
Confidence 99999999999999999999999999999987 3 44555678899999999999999999988776667788999999
Q ss_pred HHhHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCC
Q 004236 686 LLYDTALISSGFTPDSPADLGNKIYEMMAMALGGRWGRS 724 (766)
Q Consensus 686 lLyd~AlL~sG~~ledp~~f~~ri~~Ll~~~L~~~~~~~ 724 (766)
+|||||||++|++++||+.|++|+++||.++|+ ++++
T Consensus 628 ~l~d~All~~G~~~~dp~~f~~r~~~ll~~~l~--~~~~ 664 (666)
T 2o1u_A 628 VLFETATLRSGYLLPDTKAYGDRIERMLRLSLN--IDPD 664 (666)
T ss_dssp HHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTSC--C---
T ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcC--CCcc
Confidence 999999999999999999999999999999998 7754
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=2.2e-148 Score=1283.18 Aligned_cols=591 Identities=41% Similarity=0.714 Sum_probs=503.5
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCC
Q 004236 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (766)
Q Consensus 80 ~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (766)
.|+++||+|+++||++|+++||+|+++|||||||||+||++|+||+++++++.+.+..++.|+|.+|+++++|+|+|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 83 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999988877788999999999889999999999
Q ss_pred CCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e---------------cC---
Q 004236 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E---------------TD--- 219 (766)
Q Consensus 160 GMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s---------------~~--- 219 (766)
|||++||.++|++||.||++.|+++++.. ...+...||||||||||+||||++|+ + ++
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~~~l~~~--~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (624)
T 2ioq_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (624)
T ss_dssp CCCHHHHHHHHHHHCC-----------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSC
T ss_pred CCCHHHHHHHHHhhcccccHHHHHHhccc--ccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCe
Confidence 99999999999999999999999888731 12466799999999999999999996 1 11
Q ss_pred ----CCcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCCCCCCCCcccccccc
Q 004236 220 ----PEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTK 295 (766)
Q Consensus 220 ----~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 295 (766)
+.+..++||+|+|||+++.. +|++.++|+++|++||+||+|||+++.+. . + + | +
T Consensus 162 ~~i~~~~~~~~GT~I~L~Lk~d~~-Efl~~~~i~~ivkkys~fi~~PI~~~~~e----~--~-~----~----------~ 219 (624)
T 2ioq_A 162 YTVADITKEDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEKRE----E--K-D----G----------E 219 (624)
T ss_dssp CEEEEECCSSSEEEEEEEECTTCG-GGGCHHHHHHHHHHHHTTCSSCEEEEEEE----E--C-S----S----------C
T ss_pred EEEEECCCCCCCeEEEEEEcchhh-hcchHHHHHHHHHHHhccCCCceEEeecc----c--c-c----c----------c
Confidence 11245799999999999998 99999999999999999999999996520 0 0 0 1 0
Q ss_pred ccccccccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCcccccc
Q 004236 296 KTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMN 375 (766)
Q Consensus 296 ~k~~~~~~~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~ 375 (766)
.+++|+.+|+.+|+|+++++++++++|.+||++++++|++||+|+|+++||+++|+|+||+|+.+||++|. .
T Consensus 220 ------~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~~~--r 291 (624)
T 2ioq_A 220 ------TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWN--R 291 (624)
T ss_dssp ------EEEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEEESSSCEEEEEECCSSCCGGGSS--S
T ss_pred ------cccceEEEeCCccceEecCccchHHHHHHHHHhhccchhcCeEEEEecccceEEEEEEEEeCCcCccchhh--h
Confidence 14578999999999999999999999999999999999999999999999999999999999999999875 3
Q ss_pred ccccCeEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHH
Q 004236 376 PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKE 455 (766)
Q Consensus 376 ~~~~~ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e 455 (766)
..+++|+||||||||+|+|+ +|||+||+||+|||||+|||||||||+||+|++|++||+.|++||+++|.+||+ +||+
T Consensus 292 ~~~~~i~lyvn~v~I~d~~~-~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~~-~d~e 369 (624)
T 2ioq_A 292 DHKHGLKLYVQRVFIMDDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAK-DDAE 369 (624)
T ss_dssp SCCCCEEEEESSCEEEEEEC-SSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH-HCHH
T ss_pred cccCCeEEEECCEEeecchh-ccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-cCHH
Confidence 45789999999999999999 999999999999999999999999999999999999999999999999999997 7999
Q ss_pred HHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCC--cccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHH
Q 004236 456 DYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEE--ELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEK 533 (766)
Q Consensus 456 ~Y~kF~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~--~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~ 533 (766)
+|++||++||++||+|+++|+.||++|++||||+||++++ +++||+||++|||++|+.|||++|+|++++++|||+|.
T Consensus 370 ~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~~sp~~e~ 449 (624)
T 2ioq_A 370 KYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLEL 449 (624)
T ss_dssp HHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHHHCHHHHH
T ss_pred HHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHH
Confidence 9999999999999999999999999999999999998764 79999999999999999999999999999999999999
Q ss_pred HhhcCceEEecCCcchHHHHHHHhhccCcceeeccccccCCCCc-hhHhH--HhhHHHHHHHHHHHHHHhCCceeEEEEe
Q 004236 534 LVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDE-DEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVS 610 (766)
Q Consensus 534 ~~~kG~EVL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~-eee~~--e~~~~~f~~L~~~lK~~L~~kV~~V~vS 610 (766)
|+++|||||||++||||+||++|.+|+|++|++|+++++++++. +++++ ++.+++|++||+|||++|+++|++|++|
T Consensus 450 ~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~v~~V~~s 529 (624)
T 2ioq_A 450 LRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLT 529 (624)
T ss_dssp HHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSCSTTTTTCC-------HHHHHHHHHHHHHHHHHSSSSSSEEEEC
T ss_pred HHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecccccccccchhhhhhhhHhHHHHHHHHHHHHHhhcCCceEEEEe
Confidence 99999999999999999999999999999999999999998753 33322 4567899999999999999999999999
Q ss_pred ecCCCCCEEEEeCCCCccHHHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHhhhcCCCchHHHHHHHHHhHH
Q 004236 611 KRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDT 690 (766)
Q Consensus 611 ~RL~~sP~~lv~se~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~~~~~~~lv~lLyd~ 690 (766)
+||+++|||||++++|||++|+|||++|++ .++.++++|||||+||||++|.+. .+++.++++|++||||
T Consensus 530 ~rl~~sP~~lv~~~~~~~~~m~r~m~~~~~------~~~~~~~~LeiN~~hpli~~L~~~----~~~~~~~~~~~~L~d~ 599 (624)
T 2ioq_A 530 HRLTDTPAIVSTDADEMSTQMAKLFAAAGQ------KVPEVKYIFELNPDHVLVKRAADT----EDEAKFSEWVELLLDQ 599 (624)
T ss_dssp CCCSSCCEEEECCC---------------------------CCEEEECTTCHHHHTTTSC----CCHHHHHHHHHHHHHH
T ss_pred ecCCCCcEEEEecCcCcCHHHHHHHHHhhh------cccccCceEEECCCCHHHHHHHhh----cCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999853 245678999999999999999652 3567899999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHH
Q 004236 691 ALISSGFTPDSPADLGNKIYEMMA 714 (766)
Q Consensus 691 AlL~sG~~ledp~~f~~ri~~Ll~ 714 (766)
|||++|++++||+.|++|+++||.
T Consensus 600 All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 600 ALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp HHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred HHHhCCCCccCHHHHHHHHHHHhh
Confidence 999999999999999999999985
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=1.6e-134 Score=1155.21 Aligned_cols=526 Identities=42% Similarity=0.755 Sum_probs=418.2
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCC
Q 004236 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (766)
Q Consensus 80 ~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (766)
.|+++||+|+++||++|+++||+|+++|||||||||+||++|+||+++++++.+.+..++.|+|.+|+++++|+|+|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 83 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSS
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999988877788999999999889999999999
Q ss_pred CCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e---------------cC---
Q 004236 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E---------------TD--- 219 (766)
Q Consensus 160 GMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s---------------~~--- 219 (766)
|||++||.++|++||.||++.|+++++.. ...+..+||||||||||+||||++|+ + ++
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~e~l~~~--~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (559)
T 1y4s_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (559)
T ss_dssp CCCHHHHHHHHSCCSCCCCCCTTCC----------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSE
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhcc--ccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCe
Confidence 99999999999999999999998777631 12356799999999999999999996 1 11
Q ss_pred ----CCcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCCCCCCCCcccccccc
Q 004236 220 ----PEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTK 295 (766)
Q Consensus 220 ----~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 295 (766)
+.+..++||+|+|||+++.. +|++.++|+++|++||+||++||+++.+. +++ | +
T Consensus 162 ~~i~~~~~~~~GT~I~L~Lk~d~~-Efle~~~I~~iv~kys~fi~~PI~~~~~e-------~~~----~----------~ 219 (559)
T 1y4s_A 162 YTVADITKEDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEKRE-------EKD----G----------E 219 (559)
T ss_dssp EEEEEECCCSCEEEEEEEECTTCG-GGSCHHHHHHHHHHHHTTCSSCEEEEEEE-------CST----T----------S
T ss_pred eEEeECCCCCCCeEEEEEEcchhh-hcchHHHHHHHHHHHhccCCCceEEeecc-------ccc----c----------c
Confidence 11245799999999999998 99999999999999999999999996520 000 1 0
Q ss_pred ccccccccccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCcccccc
Q 004236 296 KTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMN 375 (766)
Q Consensus 296 ~k~~~~~~~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~ 375 (766)
.+++|+.+|+.+|+|+++++++++++|.+||++++++|++||+|+|+++||+++|+|+||+|+.+||+++. .
T Consensus 220 ------~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~~~--r 291 (559)
T 1y4s_A 220 ------TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWN--R 291 (559)
T ss_dssp ------CEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECCCSSSCEEEEEEEESSCCTTCSS--S
T ss_pred ------cccceEEEeCCccceecCcccccHHHHHHHHHhhhhhhhcCeEEEEeccCCceEEEEEEEcCCcCcchhhh--h
Confidence 14578999999999999999999999999999999999999999999999999999999999999999875 3
Q ss_pred ccccCeEEEeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHH
Q 004236 376 PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKE 455 (766)
Q Consensus 376 ~~~~~ikLYvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e 455 (766)
..+++|+||||||||+|+|+ +|||+||+||+|||||+|||||||||+||+|+++++||+.|++||+++|.+||+ +||+
T Consensus 292 ~~~~~i~lyvn~v~I~d~~~-~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~I~~~l~kkv~~~l~~l~~-~d~e 369 (559)
T 1y4s_A 292 DHKHGLKLYVQRVFIMDDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAK-DDAE 369 (559)
T ss_dssp SCCCCEEEEETTEEEEEEEG-GGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHHHHHHHHHHHHHHHHHHHH-HCHH
T ss_pred cccCCeEEEEcCEEeecchh-hhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-cCHH
Confidence 45789999999999999999 999999999999999999999999999999999999999999999999999997 7999
Q ss_pred HHHHHHHHHhHHhheecccCcccHHhhcCccceeeccCCC--cccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHH
Q 004236 456 DYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEE--ELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEK 533 (766)
Q Consensus 456 ~Y~kF~~~f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~--~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~ 533 (766)
+|++||++||++||+|+++|+.||++|++||||+||++++ +++||+||++|||++|+.|||++|+|++++++|||+|.
T Consensus 370 ~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~sp~~e~ 449 (559)
T 1y4s_A 370 KYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLEL 449 (559)
T ss_dssp HHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHHTCSSSHH
T ss_pred HHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHH
Confidence 9999999999999999999999999999999999998764 79999999999999999999999999999999999999
Q ss_pred HhhcCceEEecCCcchHHHHHHHhhccCcceeeccccccCCCCc-hhHhH--HhhHHHHHHHHHHHHHHhCCceeEEEEe
Q 004236 534 LVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDE-DEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVS 610 (766)
Q Consensus 534 ~~~kG~EVL~l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~-eee~~--e~~~~~f~~L~~~lK~~L~~kV~~V~vS 610 (766)
|+++|||||||++||||+||++|.+|+|++|++|+++++++++. +++++ ++.+++|++||+|||++|+++|++|++|
T Consensus 450 ~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~v~~V~~s 529 (559)
T 1y4s_A 450 LRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLT 529 (559)
T ss_dssp HHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC----------------------------------------------
T ss_pred HHhCCceEEEecChHHHHHHHHHHHhCCceEEecccccccccccchhhhhhhhHHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 99999999999999999999999999999999999999998764 33322 4557789999999999999999999999
Q ss_pred ecCCCCCEEEEeCCCCccHHHHHHHHHHh
Q 004236 611 KRLSSSPCVLVSGKFGWSANMERLMKAQA 639 (766)
Q Consensus 611 ~RL~~sP~~lv~se~g~s~~Merimkaq~ 639 (766)
+||++||||||++++|||++|||||++|+
T Consensus 530 ~rl~~sp~~~v~~~~~~~~~m~~~~~~~~ 558 (559)
T 1y4s_A 530 HRLTDTPAIVSTDADEMSTQMAKLFAAAG 558 (559)
T ss_dssp -----------------------------
T ss_pred ccCCCCCEEEEeCCCCcCHHHHHHHHhcC
Confidence 99999999999999999999999999874
No 5
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=1.6e-126 Score=1052.76 Aligned_cols=434 Identities=45% Similarity=0.813 Sum_probs=360.0
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCccccccccccCeEEEeeeEEec
Q 004236 312 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 391 (766)
Q Consensus 312 ~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~ikLYvrrVfIs 391 (766)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++||++|+ ....+++|+|||||||||
T Consensus 3 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~-~~~~~~~ikLYvrrVfI~ 81 (448)
T 3q6m_A 3 TKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFE-NRKKKNNIKLYVRRVFIM 81 (448)
T ss_dssp -CCGGGSCTTSCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC----------CCEEEEETTEEEE
T ss_pred CCCCCCCChhhCCHHHHHHHHHHhcCCccCChheeeeccCCCeeeEEEEEccCCCchhhhh-hhhhccceeEEeeeeEEe
Confidence 5799999999999999999999999999999999999999999999999999999999986 334679999999999999
Q ss_pred cCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhHHhhee
Q 004236 392 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 471 (766)
Q Consensus 392 d~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e~Y~kF~~~f~~~lK~G 471 (766)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+++ +|+++|++||++||++||+|
T Consensus 82 d~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la--~d~e~Y~~f~~~fg~~lK~G 158 (448)
T 3q6m_A 82 DNCE-ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA--EDKENYKKFYEQFSKNIKLG 158 (448)
T ss_dssp SCCT-TSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHT--SSHHHHHHHHHHHHHHHHHH
T ss_pred cchh-hhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHhHHHHhh
Confidence 9999 99999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred cccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHhhcCceEEecCCcchHH
Q 004236 472 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEV 551 (766)
Q Consensus 472 ~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~~kG~EVL~l~dpiDE~ 551 (766)
+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++||||+
T Consensus 159 i~eD~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~ 238 (448)
T 3q6m_A 159 IHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEY 238 (448)
T ss_dssp HHHCGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSGGGHHHHHHTCCEEEECSTHHHH
T ss_pred hcccHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhChHHHHHHHCCCEEEEecCchHHH
Confidence 99999999999999999999887889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcceeeccccccCCCCchhHhH--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCEEEEeCCCCccH
Q 004236 552 AIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSA 629 (766)
Q Consensus 552 ~lq~L~ey~gk~f~~V~ke~l~l~~~eee~~--e~~~~~f~~L~~~lK~~L~~kV~~V~vS~RL~~sP~~lv~se~g~s~ 629 (766)
||++|++|+|++|++|++++++|++.+++++ ++.+++|++||+|||++||++|++|++|+||++||||||++++|||+
T Consensus 239 ~i~~L~ef~gk~~~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~ 318 (448)
T 3q6m_A 239 CVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTA 318 (448)
T ss_dssp HTTTCCEETTEEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHTGGGCSEEEECSSCSSSSEEEEECSSSCCH
T ss_pred HHHHHHhhCCceEEEecccccCcccchhhhhhHHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEeCCcchhH
Confidence 9999999999999999999999987665443 55677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHhhhcCCCchHHHHHHHHHhHHHHHhCCCCCCCHHHHHHHH
Q 004236 630 NMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPADLGNKI 709 (766)
Q Consensus 630 ~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~~~~~~~lv~lLyd~AlL~sG~~ledp~~f~~ri 709 (766)
+||||||+|++++++++++|.++++|||||+||||++|.++.+.+++++.++++|++|||||+|++|++++||+.|++||
T Consensus 319 ~Merimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~lLyd~AlL~~G~~l~DP~~f~~ri 398 (448)
T 3q6m_A 319 NMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRI 398 (448)
T ss_dssp HHHHHCCC--------------CEEEEECTTCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcccchhHHHHHHHHHHHhHHhcCCCCCCCHHHHHHHH
Confidence 99999999998877766788899999999999999999998888777889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCC----ccccccCCCCccccccCcCccccccC
Q 004236 710 YEMMAMALGGRWGRSDGD----EAESVEGNATESEISAGEASEAQVVE 753 (766)
Q Consensus 710 ~~Ll~~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~e~~d 753 (766)
++||.++|| +++++.+ +++++++.||++++ ++++.||+||
T Consensus 399 ~~ll~~~L~--id~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 442 (448)
T 3q6m_A 399 YRMIKLGLG--IDEDDPTADDTSAAVTEEMPPLEGD--DDTSRMEEVD 442 (448)
T ss_dssp HHHHHHTTC---------------------------------------
T ss_pred HHHHHHhcC--CCccccccccccccccCCCCCCCCC--cchhhhhhhc
Confidence 999999999 8765321 22334556766553 6889999887
No 6
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=3.5e-125 Score=1046.40 Aligned_cols=415 Identities=44% Similarity=0.817 Sum_probs=372.0
Q ss_pred ccceecccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCccccccccccCeEE
Q 004236 304 WDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRL 383 (766)
Q Consensus 304 ~~~e~iN~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~ikL 383 (766)
.+|++||+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++||++|+ ....+++|+|
T Consensus 11 ~~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~-~~~~~~~ikL 89 (444)
T 3hjc_A 11 RENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFE-PNKKRNNIKL 89 (444)
T ss_dssp --------CCCGGGSCGGGCCHHHHHHHHHHTSSCCSCCSEEEEEEECSSSCEEEEEEECSSCCC-----CCCCCCSEEE
T ss_pred CCceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCccCCceeEEEEecccceeeEEEecCCCCCcchhh-hhhhcCCeeE
Confidence 369999999999999999999999999999999999999999999999999999999999999999986 3356799999
Q ss_pred EeeeEEeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHH
Q 004236 384 YVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWEN 463 (766)
Q Consensus 384 YvrrVfIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e~Y~kF~~~ 463 (766)
|||||||||+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++| +|+++|++||++
T Consensus 90 Yv~rVfI~D~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la--~d~e~Y~kFw~~ 166 (444)
T 3hjc_A 90 YVRRVFIMDNCE-DLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVA--ENKEDYKQFYEQ 166 (444)
T ss_dssp EETTEEEESCCG-GGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHH
T ss_pred EEeeeEeecchh-hhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred HhHHhheecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHhhcCceEEe
Q 004236 464 FGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLY 543 (766)
Q Consensus 464 f~~~lK~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~~kG~EVL~ 543 (766)
||++||+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|++|||||||
T Consensus 167 fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~ 246 (444)
T 3hjc_A 167 FGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLF 246 (444)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCHHHHHTCGGGHHHHHHTCCEEE
T ss_pred HhHHHhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCHHHHHhChHHHHHHhCCcEEEE
Confidence 99999999999999999999999999998878899999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHhhccCcceeeccccccCCCCchhHhH--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCEEEE
Q 004236 544 LIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLV 621 (766)
Q Consensus 544 l~dpiDE~~lq~L~ey~gk~f~~V~ke~l~l~~~eee~~--e~~~~~f~~L~~~lK~~L~~kV~~V~vS~RL~~sP~~lv 621 (766)
|+|||||+||++|++|+|++|++|+++++++++.+++++ ++.+++|++||+|||++||++|++|++|+||++||||||
T Consensus 247 l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv 326 (444)
T 3hjc_A 247 MTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILV 326 (444)
T ss_dssp ECSHHHHHHHHHCCEETTEEEEETTBSSCCCCCCHHHHHHHHHHHHHTHHHHHHHHHHHGGGCSEEEECSSCSSSSEEEE
T ss_pred eCCchHHHHHHHHHHhCCceEEEeccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEE
Confidence 999999999999999999999999999999977655443 566779999999999999999999999999999999999
Q ss_pred eCCCCccHHHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHhhhcCCCchHHHHHHHHHhHHHHHhCCCCCCC
Q 004236 622 SGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDS 701 (766)
Q Consensus 622 ~se~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~~~~~~~~~lv~lLyd~AlL~sG~~led 701 (766)
++++|||++|||||++|+++++.+.++|.++++|||||+||||++|.++...+++++.++++|++|||||||++|++++|
T Consensus 327 ~~e~g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d~~~~~~~~l~~lLyd~AlL~~G~~led 406 (444)
T 3hjc_A 327 TSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLED 406 (444)
T ss_dssp BCSSSBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHTCCCSC
T ss_pred cCCccccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCCCCccc
Confidence 99999999999999999887666666788999999999999999999988877778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCC
Q 004236 702 PADLGNKIYEMMAMALGGRWGRS 724 (766)
Q Consensus 702 p~~f~~ri~~Ll~~~L~~~~~~~ 724 (766)
|+.|++|+++||.++|| ++++
T Consensus 407 p~~f~~ri~~ll~~~l~--~~~~ 427 (444)
T 3hjc_A 407 PTGYAERINRMIKLGLS--LDEE 427 (444)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHhcC--CCcc
Confidence 99999999999999999 8865
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-119 Score=994.36 Aligned_cols=402 Identities=45% Similarity=0.821 Sum_probs=380.8
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCccccccccccCeEEEeeeEEec
Q 004236 312 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 391 (766)
Q Consensus 312 ~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~ikLYvrrVfIs 391 (766)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|+ ....+++|+|||||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~-~~~~~~~ikLYvrrVfI~ 79 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVFIT 79 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCSSCSSS-SCCCCCCCEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCCcCCeeEEEeccCCCcceeEEEEecCCCchhhhh-hhhccCCeEEEEeeeEec
Confidence 4699999999999999999999999999999999999999999999999999999999886 334579999999999999
Q ss_pred cCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhHHhhee
Q 004236 392 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 471 (766)
Q Consensus 392 d~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e~Y~kF~~~f~~~lK~G 471 (766)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++| +|+++|++||++||++||+|
T Consensus 80 d~~~-~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la--~~~e~y~kf~~~fg~~lK~G 156 (405)
T 2cge_A 80 DEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLG 156 (405)
T ss_dssp SSCS-SSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHH
T ss_pred Cchh-hhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHhhhhhcch
Confidence 9999 99999999999999999999999999999999999999999999999999999 47999999999999999999
Q ss_pred cccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHhhcCceEEecCCcchHH
Q 004236 472 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEV 551 (766)
Q Consensus 472 ~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~~kG~EVL~l~dpiDE~ 551 (766)
+++|+.||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||||++||||+
T Consensus 157 ~~eD~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~k~kG~EVL~l~d~iDe~ 236 (405)
T 2cge_A 157 VHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEY 236 (405)
T ss_dssp HHHCTTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCTTHHHHHHHTCCEEEECSHHHHH
T ss_pred hccCHHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCEEEEecCchHHH
Confidence 99999999999999999999877789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcceeeccccccCCCCchhHhH--HhhHHHHHHHHHHHHHHhCCceeEEEEeecCCCCCEEEEeCCCCccH
Q 004236 552 AIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSA 629 (766)
Q Consensus 552 ~lq~L~ey~gk~f~~V~ke~l~l~~~eee~~--e~~~~~f~~L~~~lK~~L~~kV~~V~vS~RL~~sP~~lv~se~g~s~ 629 (766)
||++|.+|+|++|++|+++ +++++.+++++ ++.+++|++||+|||++||++|.+|++|+||++||||+|++++|||+
T Consensus 237 ~i~~L~e~~gk~~~sV~~~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~ 315 (405)
T 2cge_A 237 AFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSA 315 (405)
T ss_dssp HHHHHCBSSSBEEESSBCC-CCSSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEECSSCCSSSEEEEECSSSCCH
T ss_pred HHHHHHHhCCceeEEcccc-ccccccchhhhhhhHhHHHHHHHHHHHHHHhcCcceEEEEEeccCCCCeEEEeccccccH
Confidence 9999999999999999999 98876554433 45577899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHhhhcC-CCchHHHHHHHHHhHHHHHhCCCCCCCHHHHHHH
Q 004236 630 NMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNA-PDSTDAKRAVDLLYDTALISSGFTPDSPADLGNK 708 (766)
Q Consensus 630 ~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~~~~~-~~~~~~~~lv~lLyd~AlL~sG~~ledp~~f~~r 708 (766)
+|||||++|+++++.+.++|.++++|||||+||||++|.++.+.+ ++++.++++|++|||||+|++|++++||+.|++|
T Consensus 316 ~mer~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~dp~~f~~r 395 (405)
T 2cge_A 316 NMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASR 395 (405)
T ss_dssp HHHHHHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTGGGCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred HHHHHHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH
Confidence 999999999888777767788999999999999999999876654 4567899999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 004236 709 IYEMMAMALG 718 (766)
Q Consensus 709 i~~Ll~~~L~ 718 (766)
+++||..+||
T Consensus 396 ~~~ll~~~l~ 405 (405)
T 2cge_A 396 INRLISLGLN 405 (405)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999999886
No 8
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=2.9e-93 Score=749.29 Aligned_cols=286 Identities=47% Similarity=0.852 Sum_probs=241.9
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCccccccccccCeEEEeeeEEec
Q 004236 312 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 391 (766)
Q Consensus 312 ~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~ikLYvrrVfIs 391 (766)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++||++|+ ....+++|+|||||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~-~~~~~~~ikLYvrrVfI~ 79 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVFIT 79 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCCSCCSEEEEEEECSSSCEEEEEEECSSCCCCCSS-SCCCCCCCEEEETTEEEE
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCcccCeeEEEEeccCCceeEEEEEecCCCcchhhh-hhhccCCeEEEEeeeEee
Confidence 3699999999999999999999999999999999999999999999999999999999986 344579999999999999
Q ss_pred cCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhHHhhee
Q 004236 392 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 471 (766)
Q Consensus 392 d~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e~Y~kF~~~f~~~lK~G 471 (766)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++| +|+++|++||++||++||+|
T Consensus 80 d~~~-~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la--~d~e~Y~kf~~~fg~~lK~G 156 (288)
T 1hk7_A 80 DEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLG 156 (288)
T ss_dssp SSCS-SSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHH
T ss_pred cchh-hhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHhHHHhhh
Confidence 9999 99999999999999999999999999999999999999999999999999999 68999999999999999999
Q ss_pred cccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHhhcCceEEecCCcchHH
Q 004236 472 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEV 551 (766)
Q Consensus 472 ~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~~kG~EVL~l~dpiDE~ 551 (766)
+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|+|+++|||||||+|||||+
T Consensus 157 i~eD~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~ 236 (288)
T 1hk7_A 157 VHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEY 236 (288)
T ss_dssp HHHCTTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHTTTCCCEEECSHHHHH
T ss_pred hcccHHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCHHHHHHHHCCCEEEEecCchHHH
Confidence 99999999999999999999887789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcceeeccccccCCCCchhHhH--HhhHHHHHHHHHHHHHHhCC
Q 004236 552 AIQNLQTFNEKKFVDISKEDLELGDEDEVKE--RETKQEFNLLCDWIKQQLGD 602 (766)
Q Consensus 552 ~lq~L~ey~gk~f~~V~ke~l~l~~~eee~~--e~~~~~f~~L~~~lK~~L~~ 602 (766)
||++|.+|+|++|++|+++ +++++.+++++ ++.+++|++||+|||++||+
T Consensus 237 ~i~~L~e~~gk~~~sv~k~-~~l~~~~eek~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 237 AFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp HHHHHCEETTEEEEETTTC----------------------------------
T ss_pred HHhhhhhcCCceeeecccc-ccccchhhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998 88876554433 45577899999999999984
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=4.6e-92 Score=744.79 Aligned_cols=290 Identities=41% Similarity=0.726 Sum_probs=247.6
Q ss_pred CCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCccccccccccCeEEEeeeEEec
Q 004236 312 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 391 (766)
Q Consensus 312 ~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~ikLYvrrVfIs 391 (766)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|+ ...+++|+|||||||||
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~--~~~~~~ikLYvrrVfI~ 79 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWN--RDHKHGLKLYVQRVFIM 79 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCCSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTS--TTCCCSEEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCccCcceeEEeccccccceeEEEEecCCCCchhhh--hhccCCeEEEEeceEee
Confidence 4699999999999999999999999999999999999999999999999999999999986 23579999999999999
Q ss_pred cCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhHHhhee
Q 004236 392 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 471 (766)
Q Consensus 392 d~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e~Y~kF~~~f~~~lK~G 471 (766)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||+ +||++|++||++||++||+|
T Consensus 80 D~~e-eLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~-~d~e~Y~kF~~~fg~~lK~G 157 (303)
T 2gq0_A 80 DDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAK-DDAEKYQTFWQQFGLVLKEG 157 (303)
T ss_dssp EEEG-GGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHTTH
T ss_pred cchh-hhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhh
Confidence 9999 999999999999999999999999999999999999999999999999999997 89999999999999999999
Q ss_pred cccCcccHHhhcCccceeeccCC--CcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHhhcCceEEecCCcch
Q 004236 472 CVEDSGNHKRLAPLLRFYTSKSE--EELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPID 549 (766)
Q Consensus 472 ~~eD~~nr~~l~~LLrF~Ts~~~--~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~~kG~EVL~l~dpiD 549 (766)
+++|..||++|++||||+||+++ ++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||||++|||
T Consensus 158 i~eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iD 237 (303)
T 2gq0_A 158 PAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRID 237 (303)
T ss_dssp HHHCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCEEEECSTTH
T ss_pred hhcCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhcChHHHHHHHCCCeEEEeCchhH
Confidence 99999999999999999999865 5799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcceeeccccccCCCCchhHhHHhhHHHHHHHHHHHHHHhCCcee--EEEEeecCCCCCEEEEeC
Q 004236 550 EVAIQNLQTFNEKKFVDISKEDLELGDEDEVKERETKQEFNLLCDWIKQQLGDKVA--KVQVSKRLSSSPCVLVSG 623 (766)
Q Consensus 550 E~~lq~L~ey~gk~f~~V~ke~l~l~~~eee~~e~~~~~f~~L~~~lK~~L~~kV~--~V~vS~RL~~sP~~lv~s 623 (766)
|+||++|.+|+|++|++|++++++|++.+ ++.||++|. +|.+|+||++||||+++.
T Consensus 238 e~~i~~L~e~~gk~f~sV~k~~l~l~~~~------------------~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 295 (303)
T 2gq0_A 238 EWMMNYLTEFDGKPFQSVSKVDESLEKLA------------------DGDLGTLVPRGSMAISDPNSSSVDKLAAA 295 (303)
T ss_dssp HHHTTTCCEETTEEEEETTC--------------------------------------------------------
T ss_pred HHHHHHHHhcCCcceEEeeccccCccccc------------------hhhhccccccCCccccCcCCcchHHHHHH
Confidence 99999999999999999999999885322 245788888 899999999999999864
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=1.2e-89 Score=716.16 Aligned_cols=263 Identities=49% Similarity=0.889 Sum_probs=249.9
Q ss_pred ccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCccccccccccCeEEEeeeEE
Q 004236 310 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVF 389 (766)
Q Consensus 310 N~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~ikLYvrrVf 389 (766)
|+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++||++|+ ....+++|+|||||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~-~~~~~~~ikLYv~rVf 79 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFE-NKKKKNNIKLYVRRVF 79 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC---------CCCEEEEETTEE
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCccCchheeeecccCCeeEEEEEEccCCCchhhhh-hhhhcCCeeEEEEEEE
Confidence 467899999999999999999999999999999999999999999999999999999999986 3346799999999999
Q ss_pred eccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhHHhh
Q 004236 390 ISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLK 469 (766)
Q Consensus 390 Isd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e~Y~kF~~~f~~~lK 469 (766)
|||+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++| +|+++|++||++||++||
T Consensus 80 I~d~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la--~d~e~Y~~f~~~fg~~lK 156 (268)
T 3pry_A 80 IMDSCD-ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA--EDKENYKKFYEAFSKNLK 156 (268)
T ss_dssp EESCCG-GGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHH
T ss_pred eecchh-hhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999999999 789999999999999999
Q ss_pred eecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHhhcCceEEecCCcch
Q 004236 470 LGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPID 549 (766)
Q Consensus 470 ~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~~kG~EVL~l~dpiD 549 (766)
+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|+|++||||||||+||||
T Consensus 157 ~G~~eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~sp~~E~~k~kg~EVL~l~d~iD 236 (268)
T 3pry_A 157 LGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPID 236 (268)
T ss_dssp HHHHHCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHTCHHHHHHHTTTCCEEECCSTTH
T ss_pred hHhhCCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHhChHHHHHHHcCceEEEeCCchH
Confidence 99999999999999999999998877899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcceeeccccccCCCC
Q 004236 550 EVAIQNLQTFNEKKFVDISKEDLELGD 576 (766)
Q Consensus 550 E~~lq~L~ey~gk~f~~V~ke~l~l~~ 576 (766)
|+||++|++|+||+|++|++++++|++
T Consensus 237 e~~i~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 237 EYCVQQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp HHHHHHHCEETTEEEEETTCSSCCCCC
T ss_pred HHHHHHHHhcCCceeeecccccCCCcc
Confidence 999999999999999999999999874
No 11
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=5.6e-89 Score=709.18 Aligned_cols=257 Identities=48% Similarity=0.883 Sum_probs=241.5
Q ss_pred ccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCccccccccccCeEEEeeeEE
Q 004236 310 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVF 389 (766)
Q Consensus 310 N~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~~~~~~~~ikLYvrrVf 389 (766)
|+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|+ ....+++|+|||||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~-~~~~~~~ikLYvrrVf 79 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE-SKKKKNNIKLYVRRVF 79 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTC-C----CCEEEEETTEE
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCccCCeeEEEeeccCcceeEEEEEecCCCchhhhh-hhhccCCeEEEEeeeE
Confidence 789999999999999999999999999999999999999999999999999999999999986 3345799999999999
Q ss_pred eccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhHHhh
Q 004236 390 ISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLK 469 (766)
Q Consensus 390 Isd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e~Y~kF~~~f~~~lK 469 (766)
|||+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+|| +|+|+|++||++||++||
T Consensus 80 I~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la--~d~e~y~~f~~~fg~~lK 156 (260)
T 1usu_A 80 ITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIK 156 (260)
T ss_dssp EESCCT-TSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred eccchh-hhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHhhhhc
Confidence 999999 99999999999999999999999999999999999999999999999999999 589999999999999999
Q ss_pred eecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHhhcCceEEecCCcch
Q 004236 470 LGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPID 549 (766)
Q Consensus 470 ~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~~kG~EVL~l~dpiD 549 (766)
+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|+|++||||||||+||||
T Consensus 157 ~G~~eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~lE~~k~kg~EVL~l~d~iD 236 (260)
T 1usu_A 157 LGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPID 236 (260)
T ss_dssp HHHHHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHH
T ss_pred chhccCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchH
Confidence 99999999999999999999998766799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcceeecccc
Q 004236 550 EVAIQNLQTFNEKKFVDISKE 570 (766)
Q Consensus 550 E~~lq~L~ey~gk~f~~V~ke 570 (766)
|+||++|.+|+|++|++|+++
T Consensus 237 e~~i~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 237 EYAFTQLKEFEGKTLVDITKD 257 (260)
T ss_dssp HHHHHHHCEETTEEEEETTCC
T ss_pred HHHHHHHHhhCCceEEecccc
Confidence 999999999999999999997
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=1.1e-86 Score=695.74 Aligned_cols=260 Identities=42% Similarity=0.839 Sum_probs=232.8
Q ss_pred ccCCCCcccCCCCCCHHHHHHHHHHHhcCCCCCceeeeeccccceeeEEEEEeeCCCCCCcccc-ccccccCeEEEeeeE
Q 004236 310 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEI-MNPKTKNIRLYVKRV 388 (766)
Q Consensus 310 N~~~piW~r~~~evt~eeY~~FYk~~~~~~~dpL~~~h~~~eg~~~f~~llyiP~~~p~~~~~~-~~~~~~~ikLYvrrV 388 (766)
|+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++||+++.. ....+++|+||||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvrrV 80 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVKRV 80 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCCSCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEETTE
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCccCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEeee
Confidence 7889999999999999999999999999999999999999999999999999999999987642 234579999999999
Q ss_pred EeccCCCCCCcccccccceeeecCCCCCCccchHhhhccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhHHh
Q 004236 389 FISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFL 468 (766)
Q Consensus 389 fIsd~~~~dLlP~wl~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~Irk~l~~kvl~~L~~la~~~d~e~Y~kF~~~f~~~l 468 (766)
||||+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|+ +|||+|++||++||++|
T Consensus 81 fI~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~-~d~e~y~kf~~~fg~~l 158 (263)
T 1y6z_A 81 FINDKFS-ESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKE-TGGDKWTKFLNTFGKYL 158 (263)
T ss_dssp EEESCGG-GGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHH
T ss_pred Eeecchh-hhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999997 78999999999999999
Q ss_pred heecccCcccHHhhcCccceeeccCCCcccCHHHHHHhcccCCCeEEEEecCCHHHHhcCcchHHHhhcCceEEecCCcc
Q 004236 469 KLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPI 548 (766)
Q Consensus 469 K~G~~eD~~nr~~l~~LLrF~Ts~~~~~~~SL~eYv~rmke~Qk~IYYi~~~s~~~~~~SP~lE~~~~kG~EVL~l~dpi 548 (766)
|+|+++|.+|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||||++||
T Consensus 159 K~G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~E~~~~kg~EVL~l~~~i 238 (263)
T 1y6z_A 159 KIGVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPI 238 (263)
T ss_dssp HHHHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCCEEECSHH
T ss_pred ccccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCcHHHHHHhCCCeEEEeCCcH
Confidence 99999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH--hhccCcceeeccccc
Q 004236 549 DEVAIQNL--QTFNEKKFVDISKED 571 (766)
Q Consensus 549 DE~~lq~L--~ey~gk~f~~V~ke~ 571 (766)
||+||++| ++|+|++|++|++++
T Consensus 239 De~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 239 DEFCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp HHHHHHHHHHHCBTTBCEEETTCC-
T ss_pred HHHHHHHhhhhccCCceEEecCCCC
Confidence 99999999 599999999999874
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=5.4e-57 Score=474.78 Aligned_cols=229 Identities=51% Similarity=0.791 Sum_probs=201.4
Q ss_pred CCccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeC
Q 004236 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (766)
Q Consensus 78 ~~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 157 (766)
...++|.||||+++||+||+++||||+++|||||||||+|||+|+||+++++++.+...+++.|+|.+|+++++|+|.||
T Consensus 21 ~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DN 100 (281)
T 3peh_A 21 ESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDT 100 (281)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred hccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeC
Confidence 34689999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred CCCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC----
Q 004236 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD---- 219 (766)
Q Consensus 158 GiGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~---- 219 (766)
|+|||+++|.++|++||+||++.|+++++. .+.+..+||||||||||+||||++|+ +++
T Consensus 101 GiGMt~edL~~~LgtIa~Sgtk~f~e~l~~---~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~f 177 (281)
T 3peh_A 101 GIGMTKVDLINNLGTIAKSGTSNFLEAISK---SGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKF 177 (281)
T ss_dssp SCCCCHHHHHHHHHHHHHSCHHHHHHHHHH---TTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCE
T ss_pred CCCCCHHHHHHHHHHHHhHhhhhHHHhhhc---cccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCccE
Confidence 999999999999999999999999999974 13567899999999999999999996 111
Q ss_pred ------CCcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCCC---C---CC--
Q 004236 220 ------PEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPE---E---GE-- 285 (766)
Q Consensus 220 ------~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~~---~---~~-- 285 (766)
.++..+|||+|+|||+++.. +|+++++|+++|++||+||+|||+++.+|+++++|+++++++ + ++
T Consensus 178 ti~~~~~~~~~~~GT~I~L~Lked~~-e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~~~~~~~~~~~~e 256 (281)
T 3peh_A 178 TIYKDPRGATLKRGTRISLHLKEDAT-NLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKDMVNDPNYDSVK 256 (281)
T ss_dssp EEEECTTCSTTSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHHHHTTCTTSSEEE
T ss_pred EEEEcCCCCCCCCCeEEEEEECCchh-hhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhhhccccccccccc
Confidence 12456899999999999998 999999999999999999999999999999888888665211 1 11
Q ss_pred CCccccccccccccccccccceecc
Q 004236 286 EQPEGEKKTKKTTKTEKYWDWELAN 310 (766)
Q Consensus 286 ~~~~~~~~~~~k~~~~~~~~~e~iN 310 (766)
+++++++++|+||+++++++|+.+|
T Consensus 257 ~~~~~~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 257 VEETDDPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp ECCCCCTTCCEEEEEEEEEEEEECC
T ss_pred cccccccccCCcceEEEEEEeEecC
Confidence 1222345567889999999999998
No 14
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=8.5e-53 Score=434.76 Aligned_cols=185 Identities=54% Similarity=0.858 Sum_probs=164.8
Q ss_pred CCccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCC------------------------
Q 004236 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLL------------------------ 133 (766)
Q Consensus 78 ~~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~------------------------ 133 (766)
+..|+|.||||+++||+||+|+||||++||||||||||+|||+|+| +++++++++
T Consensus 22 ~~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (272)
T 3ied_A 22 SPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVN 100 (272)
T ss_dssp EECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC-------------------
T ss_pred cccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhccccccccccccccccccccccc
Confidence 3468999999999999999999999999999999999999999999 888765432
Q ss_pred -------------CCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccc
Q 004236 134 -------------GDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQ 200 (766)
Q Consensus 134 -------------~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGq 200 (766)
....++.|+|.+|+++++|+|.|||||||++||.++|++||+||++.|+++++. ...+..+|||
T Consensus 101 ~~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~---~~~d~~~IGq 177 (272)
T 3ied_A 101 ESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEE---GKADSNLIGQ 177 (272)
T ss_dssp -------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHT---TSSCTTCGGG
T ss_pred cccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhc---ccccccccCc
Confidence 234568999999999999999999999999999999999999999999999983 1256789999
Q ss_pred cccceeeeeeecceeE-------------ecC---------------CCcCCCCceEEEEEecCCCcccccchHHHHHHH
Q 004236 201 FGVGFYSAFLVAQKVE-------------ETD---------------PEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLV 252 (766)
Q Consensus 201 FGIGf~S~Fmvad~Ve-------------s~~---------------~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li 252 (766)
|||||||+||||++|+ +++ .+++.+|||+|+||||+++. +|+++++|+++|
T Consensus 178 FGVGFySaFmVAdkV~V~Sk~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~-e~le~~~ik~li 256 (272)
T 3ied_A 178 FGVGFYSSFLVSNRVEVYTKKEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECD-EYLEDYKLKELI 256 (272)
T ss_dssp SCCGGGGGGGTEEEEEEEEESSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGG-GGGSHHHHHHHH
T ss_pred ccceeheeeccCCEEEEEEcCCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChH-HhcCHHHHHHHH
Confidence 9999999999999996 211 12357899999999999998 999999999999
Q ss_pred HhhCCCcccceeecc
Q 004236 253 KNYSQFVSFPIYTWQ 267 (766)
Q Consensus 253 ~~ys~fi~~pI~~~~ 267 (766)
++||+||+|||++|.
T Consensus 257 kkys~fi~~PI~l~~ 271 (272)
T 3ied_A 257 KKYSEFIKFPIEIWS 271 (272)
T ss_dssp HHHCTTCCSCEEECC
T ss_pred HHHHhCCCCCeEEEe
Confidence 999999999999986
No 15
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=6.1e-52 Score=436.72 Aligned_cols=231 Identities=52% Similarity=0.840 Sum_probs=181.8
Q ss_pred CccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 004236 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (766)
Q Consensus 79 ~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (766)
..++|.||+++++||+||+++||+|+++|||||||||+||++++||+++++++.+....++.|+|.+|.+.++|+|.|||
T Consensus 4 ~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnG 83 (269)
T 1qy5_A 4 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 83 (269)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECC
Confidence 35899999999999999999999999999999999999999999999999999888888899999999889999999999
Q ss_pred CCCCHHHHHHhhhhhhccCcHHHHHHhhhcccC-CCCCCcccccccceeeeeeecceeE--------------ecC----
Q 004236 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDL-GADNGLIGQFGVGFYSAFLVAQKVE--------------ETD---- 219 (766)
Q Consensus 159 iGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~-~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~---- 219 (766)
+|||+++|.++|++||.||++.|+++++...+. ..+..+||||||||||+||||++|+ +++
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~~ 163 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFS 163 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCEE
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEEE
Confidence 999999999999999999999999988741000 1456799999999999999999996 111
Q ss_pred --C---CcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccCCCC-C------CC--
Q 004236 220 --P---EKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPE-E------GE-- 285 (766)
Q Consensus 220 --~---~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e~~~-~------~~-- 285 (766)
. +...++||+|+|||+++.. +|++.++|+++|++||+||+|||+++++|+.+++|+++++++ + ++
T Consensus 164 i~~~~~~~~~~~GT~I~L~Lk~d~~-e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (269)
T 1qy5_A 164 VIADPRGNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEA 242 (269)
T ss_dssp EEECTTCSCSSSEEEEEEEECGGGG-GGGSHHHHHHHHHTTCTTCSSCEEEEEECC------------------------
T ss_pred EEeccCCCcCCCCeEEEEEEcccch-hhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhccccccccc
Confidence 0 1235799999999999988 999999999999999999999999999998888877655211 0 11
Q ss_pred CCccc--cccccccccccccccceecc
Q 004236 286 EQPEG--EKKTKKTTKTEKYWDWELAN 310 (766)
Q Consensus 286 ~~~~~--~~~~~~k~~~~~~~~~e~iN 310 (766)
+++++ ++++|+||+++++++|+.+|
T Consensus 243 ~~~~~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 243 AVEEEEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp -----------------CCCEEEEECC
T ss_pred ccccccccccccCCceEEEEeeeEecC
Confidence 11222 23567888999999999998
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=3.1e-51 Score=423.19 Aligned_cols=188 Identities=53% Similarity=0.873 Sum_probs=173.3
Q ss_pred CccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 004236 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (766)
Q Consensus 79 ~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (766)
+.|++.||||+++||+||+++||||+++|||||||||+|||+|+||++++++..+...+++.|+|.+|+++++|+|.|||
T Consensus 15 ~~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 94 (239)
T 3nmq_A 15 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTG 94 (239)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCC
Confidence 46999999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred CCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC-----
Q 004236 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD----- 219 (766)
Q Consensus 159 iGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~----- 219 (766)
+|||++||.++|++||+||++.|+++++ .+.+.++||||||||||+|||||+|+ +++
T Consensus 95 iGMt~edL~~~LgtIA~Sgtk~f~e~~~----~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~ft 170 (239)
T 3nmq_A 95 IGMTKADLINNLGTIAKSGTKAFMEALQ----AGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFT 170 (239)
T ss_dssp CCCCHHHHHTHHHHHHHHHHHHHHHHHH----TTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEEE
T ss_pred CCCCHHHHHHHHHHHhcccchhhhhhhc----ccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcEE
Confidence 9999999999999999999999999988 34567899999999999999999996 111
Q ss_pred ----CCcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccc
Q 004236 220 ----PEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSR 271 (766)
Q Consensus 220 ----~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~ 271 (766)
.+++.+|||+|+||||++.. +|+++++|+++|++||+||+|||+++.+|++
T Consensus 171 i~~~~~~~~~~GT~I~L~lk~d~~-e~l~~~~i~~lv~kys~fi~~pI~~~~~~~~ 225 (239)
T 3nmq_A 171 VRADHGEPIGRGTKVILHLKEDQT-EYLEERRVKEVVKKHSQFIGYPITLYLEKER 225 (239)
T ss_dssp EEECCSSCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHCTTCSSCEEECCCSCC
T ss_pred EEecCCCcCCCCCEEEEEECCChH-HhcCHHHHHHHHHHHHhccCCceEEeeeeec
Confidence 22456899999999999998 9999999999999999999999999987643
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=8.8e-47 Score=393.50 Aligned_cols=196 Identities=52% Similarity=0.855 Sum_probs=170.5
Q ss_pred CccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 004236 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (766)
Q Consensus 79 ~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (766)
..|++.||+|+++||++|+++||+|+++|||||||||+||++++||++++++..+...+++.|+|.+|.+.++|+|.|||
T Consensus 36 ~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG 115 (256)
T 3o0i_A 36 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 115 (256)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred CCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC-----
Q 004236 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD----- 219 (766)
Q Consensus 159 iGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~----- 219 (766)
+||+++||..+|++||.||++.|++.++ .+.+...|||||+||||+|||||+|+ +++
T Consensus 116 ~GMt~edl~~~l~~ia~S~~~~f~~~L~----~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~ 191 (256)
T 3o0i_A 116 IGMTKADLINNLGTIAKSGTKAFMEALQ----AGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFT 191 (256)
T ss_dssp CCCCHHHHHTHHHHHHHHHHHHHHHHHH----TTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEE
T ss_pred CCcCHHHHHHHHHhhccccccchhhhhc----ccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceEE
Confidence 9999999999999999999999999886 23466899999999999999999996 111
Q ss_pred --C--CcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccccC
Q 004236 220 --P--EKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEE 279 (766)
Q Consensus 220 --~--~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~e 279 (766)
+ ....++||+|+|+||.+.. +|++.++|+++|++||+||+|||+++.+|++++++++++
T Consensus 192 v~~~~~~~~~~GT~I~l~LK~~~~-e~~e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~~~~ 254 (256)
T 3o0i_A 192 VRTDTGEPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDE 254 (256)
T ss_dssp EEECCSSCCSSEEEEEEEECGGGG-GGGCHHHHHHHHHHHCTTCSSCEEECCC-----------
T ss_pred EeeCCCCCCCCCcEEEEEEcCcch-hhccHHHHHHHHHHHHhhCCCCeEEeeeeeecccCCCcc
Confidence 1 2345899999999999998 999999999999999999999999999988887776543
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=3.3e-45 Score=377.23 Aligned_cols=195 Identities=52% Similarity=0.853 Sum_probs=169.2
Q ss_pred CccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 004236 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (766)
Q Consensus 79 ~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (766)
..|+++||+|+++||++|+++||+++.+|||||||||+||++++||++++++..+...+++.|+|.+|.+.++|+|.|||
T Consensus 8 ~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG 87 (228)
T 3t0h_A 8 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 87 (228)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999999988777778899999999889999999999
Q ss_pred CCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC-----
Q 004236 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD----- 219 (766)
Q Consensus 159 iGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~----- 219 (766)
+||++++|..+|++||.||++.|.+.++ .+.+...||+||+||||+||||++|+ +++
T Consensus 88 ~GMs~edl~~~l~~ia~S~~~~f~~~l~----~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~ 163 (228)
T 3t0h_A 88 IGMTKADLINNLGTIAKSGTKAFMEALQ----AGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFT 163 (228)
T ss_dssp CCCCHHHHHTGGGSCHHHHHHHHHHHHH----TTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEE
T ss_pred CCCCHHHHHHHHHhhccccchhhhhhhc----ccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEE
Confidence 9999999999999999999999988876 23456799999999999999999996 111
Q ss_pred --C--CcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeeccccccccccccc
Q 004236 220 --P--EKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEE 278 (766)
Q Consensus 220 --~--~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~~ 278 (766)
+ ....++||+|+|+||++.. ||++..+|+++|++||+||+|||+++.+++.+++++++
T Consensus 164 v~~~~~~~~~~GT~I~v~Lk~~~~-E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~~~ 225 (228)
T 3t0h_A 164 VRTDTGEPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDD 225 (228)
T ss_dssp EEECCSSCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHSTTCSSCEEECCC----------
T ss_pred EeecCCCCCCCCcEEEEEECCchh-hhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCCCc
Confidence 1 1245899999999999998 99999999999999999999999999988777776643
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=2.4e-44 Score=373.04 Aligned_cols=189 Identities=56% Similarity=0.899 Sum_probs=154.8
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCC
Q 004236 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (766)
Q Consensus 80 ~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (766)
.|++.||+|+++|+++|+++||+++.+|||||||||+||++++||+++++++.+....++.|+|.+|.+.++|+|.|||+
T Consensus 9 ~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~ 88 (236)
T 2gqp_A 9 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 88 (236)
T ss_dssp TTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCc
Confidence 58999999999999999999999999999999999999999999999999988877788999999998889999999999
Q ss_pred CCCHHHHHHhhhhhhccCcHHHHHHhhhcccC-CCCCCcccccccceeeeeeecceeE--e------------cC-----
Q 004236 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDL-GADNGLIGQFGVGFYSAFLVAQKVE--E------------TD----- 219 (766)
Q Consensus 160 GMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~-~~~~~~IGqFGIGf~S~Fmvad~Ve--s------------~~----- 219 (766)
||+++||.++|++||.||++.|+++++...+. ..+...||||||||||+||||++|+ + ++
T Consensus 89 GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~gg~~~i 168 (236)
T 2gqp_A 89 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSV 168 (236)
T ss_dssp CCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESSSCEEE
T ss_pred CCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeCCEEEE
Confidence 99999999999999999999998887631000 1355799999999999999999996 1 11
Q ss_pred -CC---cCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccc
Q 004236 220 -PE---KLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEK 269 (766)
Q Consensus 220 -~~---~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~ 269 (766)
+. ....+||+|+|+|+++.. +|++.++|+++|++||+||+|||++++++
T Consensus 169 ~~~~~~~~~~~GT~I~l~Lk~~~~-~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 169 IADPRGNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp EECTTCSCSSSEEEEEEEECGGGG-GGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred EeccCCCCCCCCeEEEEEECCcch-hhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 11 135799999999999988 99999999999999999999999998754
No 20
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=2.6e-41 Score=355.30 Aligned_cols=194 Identities=52% Similarity=0.854 Sum_probs=168.2
Q ss_pred CccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 004236 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (766)
Q Consensus 79 ~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (766)
..+++.||+|+++|+++|+++||+++.+|||||||||+||+.++||+++++++.......+.|+|..+....+|+|.|||
T Consensus 44 ~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG 123 (264)
T 1yc1_A 44 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 123 (264)
T ss_dssp CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECC
Confidence 35899999999999999999999999999999999999999999999999888776677889999988888999999999
Q ss_pred CCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e------------cC-----
Q 004236 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E------------TD----- 219 (766)
Q Consensus 159 iGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s------------~~----- 219 (766)
+||++++|..+|++||.||++.|+++++. +.+...||+|||||||+|++|++|+ + .+
T Consensus 124 ~GMs~edL~~~l~~ia~S~~~~f~~~l~~----~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~ 199 (264)
T 1yc1_A 124 IGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFT 199 (264)
T ss_dssp CCCCHHHHHHHHHSCTTSCHHHHHHHHHT----TCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEE
T ss_pred cCCCHHHHHHHHHhhccccchhhhhhhcc----ccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEE
Confidence 99999999999999999999999988872 3466799999999999999999996 1 11
Q ss_pred --C--CcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeecccccccccccc
Q 004236 220 --P--EKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEE 277 (766)
Q Consensus 220 --~--~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~~~~ 277 (766)
+ .....+||+|+|+|+++.. +|++..+|+++|++|+.||+|||+++.+++.++++++
T Consensus 200 i~~~~~~~~~~GT~I~l~Lk~~~~-e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~~~~~~~ 260 (264)
T 1yc1_A 200 VRTDTGEPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSD 260 (264)
T ss_dssp EEECCSSCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHTTTCSSCEEECCCC--------
T ss_pred EeecCCCCCCCCeEEEEEECCchh-hhhhHHHHHHHHHHHHhhCCCCEEEeeccccccccCC
Confidence 1 1235799999999999988 9999999999999999999999999998765555443
No 21
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=4.4e-41 Score=345.00 Aligned_cols=190 Identities=52% Similarity=0.847 Sum_probs=168.6
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCC
Q 004236 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (766)
Q Consensus 80 ~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 159 (766)
.|++.||+++++|+++|+++||+++.+|||||||||+||+.++||++++++..+....++.|+|..+.+..+|+|.|||+
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~ 82 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCC
Confidence 48999999999999999999999999999999999999999999999999887766778899999887788999999999
Q ss_pred CCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e------------cC------
Q 004236 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E------------TD------ 219 (766)
Q Consensus 160 GMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s------------~~------ 219 (766)
||++++|..+|++||.||++.|+++++. +.+...||+|||||||+|++|++|+ + ++
T Consensus 83 GMs~edl~~~l~~ia~S~~~~f~~k~~~----~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i 158 (220)
T 2wer_A 83 GMTKAELINNLGTIAKSGTKAFMEALSA----GADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTV 158 (220)
T ss_dssp CCCHHHHHHHTTTSCCTTHHHHHHHHTT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEE
T ss_pred CCCHHHHHHHHHhHhcccchhHHHHhhc----cCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEe
Confidence 9999999999999999999999988873 3466799999999999999999996 1 10
Q ss_pred -CC---cCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeeccccccccc
Q 004236 220 -PE---KLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIE 274 (766)
Q Consensus 220 -~~---~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~~~~~~~ 274 (766)
+. ....+||+|+|+|+++.. +|++.++|+++|++|+.|+++||+++.+|+.+++
T Consensus 159 ~~~~~~~~~~~GT~I~l~Lk~~~~-~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~~~~~ 216 (220)
T 2wer_A 159 TLDEVNERIGRGTILRLFLKDDQL-EYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKE 216 (220)
T ss_dssp EECSSSCCCSSEEEEEEEECTTCG-GGGCHHHHHHHHHHHCTTCCSCEEECCCCCCC--
T ss_pred ecccCCCCCCCCeEEEEEECcchH-HhCCHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 11 245799999999999988 9999999999999999999999999987644433
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=1.2e-36 Score=315.25 Aligned_cols=187 Identities=47% Similarity=0.797 Sum_probs=162.7
Q ss_pred CccccchhhhHHHHHHHHHHcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCC
Q 004236 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (766)
Q Consensus 79 ~~e~~~Fqae~~~ll~ll~~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 158 (766)
..|++.||+++++|+++|+++||+++.+|||||||||+||+.++|+..+++++.......+.|+|.++.+...|+|.|||
T Consensus 23 ~~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG 102 (235)
T 2ior_A 23 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG 102 (235)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred ccccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECC
Confidence 35899999999999999999999999999999999999999999999998887766677788999988888899999999
Q ss_pred CCCCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e--cC---------------
Q 004236 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E--TD--------------- 219 (766)
Q Consensus 159 iGMt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s--~~--------------- 219 (766)
+||+++||..+|++||.||++.|++.++.. ...+...||+|||||||+|++|++|+ + .+
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~--~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~ 180 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG 180 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSC--HHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSS
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccc--cccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCC
Confidence 999999999999999999999998776410 01234689999999999999999986 1 11
Q ss_pred -----CCcCCCCceEEEEEecCCCcccccchHHHHHHHHhhCCCcccceeeccc
Q 004236 220 -----PEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQE 268 (766)
Q Consensus 220 -----~~~~~~~GT~I~L~Lk~~~~~e~~~~~~i~~li~~ys~fi~~pI~~~~~ 268 (766)
+.....+||+|+|+|+++.. +|++..+|+++|++|+.|+++||+++.+
T Consensus 181 ~~~i~~~~~~~~GT~V~v~Lk~~~~-~~~e~~~i~~lv~~ya~~l~~PI~~~~~ 233 (235)
T 2ior_A 181 EYTVADITKEDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEKR 233 (235)
T ss_dssp EEEEEEECCCSCEEEEEEEECTTCG-GGGCHHHHHHHHHHHTTSCCSCEEEC--
T ss_pred cEEEeeCCCCCCCEEEEEEEcCchh-hhCCHHHHHHHHHHHhccCCCCeEeccC
Confidence 01244799999999999988 9999999999999999999999999753
No 23
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=99.98 E-value=1.8e-32 Score=257.57 Aligned_cols=114 Identities=26% Similarity=0.424 Sum_probs=105.0
Q ss_pred HHHHHHHHHhCCceeEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcCCCCccccccCceeEEECCCChHHHHHHHh
Q 004236 591 LLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAA 670 (766)
Q Consensus 591 ~L~~~lK~~L~~kV~~V~vS~RL~~sP~~lv~se~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~HPLIk~L~~~ 670 (766)
.+|+|+|++||++|++|++|+||++||||||++++|||++|||||++|+++ ++.++++|||||+||||++|.+.
T Consensus 12 ~~~~~~K~~L~dkV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~------~~~~k~~LEINp~HplIk~L~~~ 85 (126)
T 1sf8_A 12 SFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQK------VPEVKYIFELNPDHVLVKRAADT 85 (126)
T ss_dssp CHHHHHHHHHGGGSSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTTSC------CCCCCCEEEECTTSHHHHHHHHC
T ss_pred HHHHHHHHHhcCcccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhccc------cccCCeeeeECCCCHHHHHHHHh
Confidence 489999999999999999999999999999999999999999999988532 35689999999999999999763
Q ss_pred hhcCCCchHHHHHHHHHhHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 004236 671 CKNAPDSTDAKRAVDLLYDTALISSGFTPDSPADLGNKIYEMMA 714 (766)
Q Consensus 671 ~~~~~~~~~~~~lv~lLyd~AlL~sG~~ledp~~f~~ri~~Ll~ 714 (766)
.+++.+++++++|||||+|++||+++||+.|++|+|+||.
T Consensus 86 ----~~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 86 ----EDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp ----CSHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred ----cChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 3567799999999999999999999999999999999985
No 24
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.42 E-value=1.6e-13 Score=148.65 Aligned_cols=132 Identities=22% Similarity=0.269 Sum_probs=90.0
Q ss_pred HcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHhhhhhhcc
Q 004236 98 HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQS 176 (766)
Q Consensus 98 ~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~L~tIa~S 176 (766)
-....++..+|+|||+||.||.. . .|.|.++.+ ...|+|.|||+||+.+++...+...+.|
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a----------------~--~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 80 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGA----------------T--RIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTC----------------S--EEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCS
T ss_pred CCchhCHHHHHHHHHHHHHHCCC----------------C--eEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccccc
Confidence 34456889999999999999962 1 455555443 3689999999999999999999888766
Q ss_pred CcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e-------------cCCC-------cCCCCceEEEEE-
Q 004236 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E-------------TDPE-------KLLKRGTQITLY- 233 (766)
Q Consensus 177 g~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s-------------~~~~-------~~~~~GT~I~L~- 233 (766)
....+ +.+. ....+|++|+|++|+++++ +|+ + ++.. ...++||+|+++
T Consensus 81 K~~~~-~d~~-------~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~GT~V~v~~ 151 (333)
T 1b63_A 81 KIASL-DDLE-------AIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLD 151 (333)
T ss_dssp SCCSH-HHHH-------TCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEECCCSEEEEEEES
T ss_pred Ccccc-chhh-------hccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeecccCCCCCEEEEec
Confidence 32211 1111 2346899999999999999 675 1 1111 123699999998
Q ss_pred ec---CCCcccccc-----hHHHHHHHHhhCC
Q 004236 234 LK---EDDKYEFSE-----PTRIQGLVKNYSQ 257 (766)
Q Consensus 234 Lk---~~~~~e~~~-----~~~i~~li~~ys~ 257 (766)
|- +... .|+. -.+|.+++++|+-
T Consensus 152 Lf~n~P~r~-kflk~~~~e~~~i~~~~~~~al 182 (333)
T 1b63_A 152 LFYNTPARR-KFLRTEKTEFNHIDEIIRRIAL 182 (333)
T ss_dssp TTTTCHHHH-HTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhh-hhhccHHHHHHHHHHHHHHHhc
Confidence 11 1111 2221 2678889999885
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.03 E-value=5.9e-11 Score=130.15 Aligned_cols=145 Identities=21% Similarity=0.228 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHcCCCC-----chhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecC-CCcEEEEEeCCCCC
Q 004236 88 EVSRLMDLIVHSLYSH-----KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP-ENGTITITDTGIGM 161 (766)
Q Consensus 88 e~~~ll~ll~~~LYs~-----~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGM 161 (766)
-++.|-+.+++.+++. +..+|+|||+||.||. .. .|.|.+.. ....|+|.|||.||
T Consensus 14 ~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~----------------a~--~I~I~i~~~~~~~I~V~DnG~Gi 75 (365)
T 1h7s_A 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAG----------------AT--NIDLKLKDYGVDLIEVSDNGCGV 75 (365)
T ss_dssp ---------------CEEECCHHHHHHHHHHHHHHTT----------------CS--EEEEEEEGGGTSEEEEEECSCCC
T ss_pred hhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCC----------------CC--EEEEEEEeCCcEEEEEEECCCCc
Confidence 3677777788888875 4889999999999984 12 35555533 34689999999999
Q ss_pred CHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e-------------cCCC-----
Q 004236 162 TKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E-------------TDPE----- 221 (766)
Q Consensus 162 t~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s-------------~~~~----- 221 (766)
+.+++...+...+.|.... .. | .......|.+|+|++|+++|| +|+ + +..+
T Consensus 76 ~~~~l~~~f~~~~tsK~~~----~~---d-l~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~ 146 (365)
T 1h7s_A 76 EEENFEGLTLKHHTSKIQE----FA---D-LTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQK 146 (365)
T ss_dssp CGGGSGGGGC--------------C---C-TTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEE
T ss_pred CHHHHHHHhhhcccccccc----cc---c-hhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEee
Confidence 9999998887776552111 00 0 011134799999999999999 886 1 1011
Q ss_pred --cCCCCceEEEEE-ecCCCc---cccc-----chHHHHHHHHhhCCCc
Q 004236 222 --KLLKRGTQITLY-LKEDDK---YEFS-----EPTRIQGLVKNYSQFV 259 (766)
Q Consensus 222 --~~~~~GT~I~L~-Lk~~~~---~e~~-----~~~~i~~li~~ys~fi 259 (766)
...++||+|+++ |-.... .+|+ +-.+|++++++|+-+-
T Consensus 147 ~~~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~ 195 (365)
T 1h7s_A 147 TPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIIS 195 (365)
T ss_dssp EECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcC
Confidence 123699999997 322110 0133 3467888999998643
No 26
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.77 E-value=1.1e-09 Score=120.00 Aligned_cols=127 Identities=23% Similarity=0.239 Sum_probs=80.6
Q ss_pred CCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEe-cCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCc
Q 004236 100 LYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP-DPENGTITITDTGIGMTKEELVDCLGTIAQSGT 178 (766)
Q Consensus 100 LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~ 178 (766)
.-..+...++|||.||.||.. . .|.|.+ +.....|+|.|||.||+.+++...+..-+ +
T Consensus 22 vi~~~~~vv~eLv~NaiDA~a----------------~--~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~---t 80 (367)
T 3h4l_A 22 VITDLTTAVKELVDNSIDANA----------------N--QIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHY---T 80 (367)
T ss_dssp HCCSHHHHHHHHHHHHHHTTC----------------S--EEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEE---C
T ss_pred cccCHHHHHHHHHHHHHHCCC----------------C--EEEEEEEeCCEEEEEEEECCCCcChhHhccceeccc---c
Confidence 345677899999999999951 1 355555 33346899999999999999875322111 1
Q ss_pred HHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e------------cCCC-------cCCCCceEEEE-----
Q 004236 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E------------TDPE-------KLLKRGTQITL----- 232 (766)
Q Consensus 179 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s------------~~~~-------~~~~~GT~I~L----- 232 (766)
.++ .... | -......|.+|+|++|.++|| +|+ + +..+ ...++||+|++
T Consensus 81 sK~-~~~~---D-l~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~GTtV~v~~LF~ 154 (367)
T 3h4l_A 81 SKI-AKFQ---D-VAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKTTTSRNKGTTVLVSQLFH 154 (367)
T ss_dssp --------------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEEEECCSSEEEEEEESTTT
T ss_pred CcC-Cchh---h-hhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeeccccCCCCeEEEEchhhc
Confidence 111 0111 0 011235688899999999999 575 1 1011 12479999999
Q ss_pred --------EecCCCcccccchHHHHHHHHhhCC
Q 004236 233 --------YLKEDDKYEFSEPTRIQGLVKNYSQ 257 (766)
Q Consensus 233 --------~Lk~~~~~e~~~~~~i~~li~~ys~ 257 (766)
+++.... +| .+|+++|++|+-
T Consensus 155 n~P~R~k~flk~~~~-e~---~~i~~~l~~~Al 183 (367)
T 3h4l_A 155 NLPVRQKEFSKTFKR-QF---TKCLTVIQGYAI 183 (367)
T ss_dssp TCHHHHHHHHTTHHH-HH---HHHHHHHHHHHH
T ss_pred cCchhhhhhccchHH-HH---HHHHHHHHHHHh
Confidence 3454433 33 578999999974
No 27
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.68 E-value=5.7e-09 Score=113.59 Aligned_cols=135 Identities=25% Similarity=0.246 Sum_probs=81.7
Q ss_pred HHHHHH-HcCCCCchhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHh
Q 004236 92 LMDLIV-HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDC 169 (766)
Q Consensus 92 ll~ll~-~~LYs~~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~ 169 (766)
+...|. ...-..+...+.|||.||.||. .. .|.|.++.+ ...|+|.|||.||+.+++...
T Consensus 16 ~~~~Iaagevi~~~~~vv~eLv~NAidA~----------------a~--~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~ 77 (348)
T 3na3_A 16 VVNRIAAGEVIQRPANAIKEMIENCLDAK----------------ST--SIQVIVKEGGLKLIQIQDNGTGIRKEDLDIV 77 (348)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTT----------------CS--EEEEEEEGGGTSEEEEEECSCCCCGGGGGTT
T ss_pred HHHhhcccCcccCHHHHHHHHHHHHHHcC----------------CC--EEEEEEEeCCEEEEEEEECCcCcChHHhhhh
Confidence 344444 3334577899999999999994 12 355554433 346999999999999998653
Q ss_pred hhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--e--------------cCC----C--cCCCCc
Q 004236 170 LGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--E--------------TDP----E--KLLKRG 227 (766)
Q Consensus 170 L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--s--------------~~~----~--~~~~~G 227 (766)
+ .-..+++. ....| .......|.+|+|++|...|| +++ + .+. . ...++|
T Consensus 78 ~-~~~~tsK~------~~~~d-l~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~~G 148 (348)
T 3na3_A 78 C-ERFTTSKL------QSFED-LASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQG 148 (348)
T ss_dssp T-STTCCSSC------CCC----------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSE
T ss_pred h-cccccccc------Ccchh-hhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEecCCCC
Confidence 3 22222221 10000 011235699999999999999 675 1 110 0 123689
Q ss_pred eEEEEE------------ecCCCcccccchHHHHHHHHhhCC
Q 004236 228 TQITLY------------LKEDDKYEFSEPTRIQGLVKNYSQ 257 (766)
Q Consensus 228 T~I~L~------------Lk~~~~~e~~~~~~i~~li~~ys~ 257 (766)
|+|++. |+.... +-.+|++++++|+-
T Consensus 149 TtV~v~~LF~n~P~R~k~lk~~~~----e~~~i~~~l~~~Al 186 (348)
T 3na3_A 149 TQITVEDLFYNIATRRKALKNPSE----EYGKILEVVGRYSV 186 (348)
T ss_dssp EEEEEESTTTTCHHHHHTSCCHHH----HHHHHHHHHHHHHH
T ss_pred cEEEECcccccCchhhhhccccHH----HHHHHHHHHHHHHh
Confidence 999994 443322 33678889999874
No 28
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.33 E-value=6e-07 Score=90.63 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=76.9
Q ss_pred chhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH-------HHh-hhhhhc
Q 004236 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL-------VDC-LGTIAQ 175 (766)
Q Consensus 104 ~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el-------~~~-L~tIa~ 175 (766)
+...++|||.||.||... ..--.|+|.++.+ +.|+|.|||.||+.+++ ... ++.. .
T Consensus 18 ~~~~v~Elv~NsiDa~~~--------------g~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~-h 81 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRL-H 81 (201)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--
T ss_pred hhhhhHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeee-c
Confidence 367899999999999742 1123577777643 59999999999999884 222 2332 2
Q ss_pred cCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecCC--------CcC--CCCceEEE
Q 004236 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETDP--------EKL--LKRGTQIT 231 (766)
Q Consensus 176 Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~~--------~~~--~~~GT~I~ 231 (766)
.|+ +|-.. ...-..|..|+|.-|+-.++++++ ..+. +.. .+.||+|+
T Consensus 82 ats-K~~~~--------~~~~s~GfrGeglssinalS~~l~v~t~~~g~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~ 152 (201)
T 3fv5_A 82 AGG-KFSNK--------NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVH 152 (201)
T ss_dssp -----------------------------CHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECCTTCCEEEEE
T ss_pred ccc-CcCCC--------cccccCcccceecchhhcccceEEEEEEecCceEEEEEeCCEEcccceecccCCCCCCCeEEE
Confidence 222 23211 111246778999999999998774 1110 111 46999999
Q ss_pred EEecCCC-cccccchHHHHHHHHhhCCC-cccceeecc
Q 004236 232 LYLKEDD-KYEFSEPTRIQGLVKNYSQF-VSFPIYTWQ 267 (766)
Q Consensus 232 L~Lk~~~-~~e~~~~~~i~~li~~ys~f-i~~pI~~~~ 267 (766)
+...... ...-.+...|.+++++|+-. -...|.+..
T Consensus 153 f~Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~ 190 (201)
T 3fv5_A 153 FWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 190 (201)
T ss_dssp EEECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9643211 01224567888899988732 234555554
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.33 E-value=2e-07 Score=105.40 Aligned_cols=124 Identities=24% Similarity=0.348 Sum_probs=79.4
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecC---CCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP---ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFL 182 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~ 182 (766)
..|+|||+||.||...- ...+.+.|.+..+. +...|+|+|||+||+.+++...+.....+++.
T Consensus 35 qvl~nLv~NAida~~~g-----------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~--- 100 (471)
T 1mu5_A 35 QTVRELIENSLDATDVH-----------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY--- 100 (471)
T ss_dssp HHHHHHHHHHHHTTGGG-----------TCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC---
T ss_pred HHHHHHHHHHHHHhhcC-----------CCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc---
Confidence 46789999999997310 00113344444322 33579999999999999998766543222211
Q ss_pred HHhhhcccCCCCCCcccccccceeeeeeecce-----eE--ec---C-----------------------C--CcCCCCc
Q 004236 183 KALKENNDLGADNGLIGQFGVGFYSAFLVAQK-----VE--ET---D-----------------------P--EKLLKRG 227 (766)
Q Consensus 183 ~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~-----Ve--s~---~-----------------------~--~~~~~~G 227 (766)
......|.+|+|++++..+++. ++ +. + + .....+|
T Consensus 101 ----------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~G 170 (471)
T 1mu5_A 101 ----------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHG 170 (471)
T ss_dssp ----------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCE
T ss_pred ----------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCC
Confidence 1124568899999999888885 53 10 0 0 0123689
Q ss_pred eEEEEEecCCCcccccchHHHHHHHHhhC
Q 004236 228 TQITLYLKEDDKYEFSEPTRIQGLVKNYS 256 (766)
Q Consensus 228 T~I~L~Lk~~~~~e~~~~~~i~~li~~ys 256 (766)
|+|++.++.+.. ++ ...|.+++++|+
T Consensus 171 T~V~v~l~~~~~-e~--~~~I~~~l~~~a 196 (471)
T 1mu5_A 171 TSVAISIPGDWP-KA--KSRIYEYIKRTY 196 (471)
T ss_dssp EEEEEEEECCHH-HH--HHHHHHHHHHHH
T ss_pred EEEEEEEcCCcc-hH--HHHHHHHHHHHH
Confidence 999999876543 32 257888888887
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.30 E-value=3.8e-07 Score=104.49 Aligned_cols=124 Identities=24% Similarity=0.343 Sum_probs=80.8
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecC---CCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP---ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFL 182 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~ 182 (766)
..|+|||+||.||... . +..+.+.|.+..+. +...|+|.|||+||+.+++...+...-.+++.
T Consensus 34 qvl~NLV~NAida~~~--------g---g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~--- 99 (530)
T 2zbk_B 34 QTVRELIENSLDATDV--------H---GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY--- 99 (530)
T ss_dssp HHHHHHHHHHHTTTTT--------T---TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC---
T ss_pred HHHHHHHHHHHHHHhc--------c---CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc---
Confidence 4678999999999731 0 00124566665433 34579999999999999988766543222210
Q ss_pred HHhhhcccCCCCCCcccccccceeeeeeecc-----eeE--ec-C-------------------------C--CcCCCCc
Q 004236 183 KALKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVE--ET-D-------------------------P--EKLLKRG 227 (766)
Q Consensus 183 ~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad-----~Ve--s~-~-------------------------~--~~~~~~G 227 (766)
......|.+|+|++++..+++ .++ +. + + .....+|
T Consensus 100 ----------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~G 169 (530)
T 2zbk_B 100 ----------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHG 169 (530)
T ss_dssp ----------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCE
T ss_pred ----------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCC
Confidence 112456889999999988888 454 10 0 0 0114689
Q ss_pred eEEEEEecCCCcccccchHHHHHHHHhhC
Q 004236 228 TQITLYLKEDDKYEFSEPTRIQGLVKNYS 256 (766)
Q Consensus 228 T~I~L~Lk~~~~~e~~~~~~i~~li~~ys 256 (766)
|+|++.++.+.. ++ ...+.+++++|+
T Consensus 170 T~V~v~l~~~~~-e~--~~~i~~~l~~~A 195 (530)
T 2zbk_B 170 TSVAISIPGDWP-KA--KSRIYEYIKRTY 195 (530)
T ss_dssp EEEEEEEECCHH-HH--HHHHHHHHHHHH
T ss_pred cEEEEEeccchh-hH--HHHHHHHHHHHH
Confidence 999999877543 32 267888888886
No 31
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.24 E-value=5.3e-07 Score=99.70 Aligned_cols=135 Identities=21% Similarity=0.311 Sum_probs=85.4
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHH-------hhhhhhccC
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD-------CLGTIAQSG 177 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~-------~L~tIa~Sg 177 (766)
...|+|||.||.|+.. ++ ....|.|.++.+ ..|+|.|||.||+.+++.. .+.+....|
T Consensus 34 ~~~v~Elv~N~iD~a~--~~------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~ 98 (390)
T 1kij_A 34 HHLFKEILDNAVDEAL--AG------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHH--TT------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE
T ss_pred HHHHHHHHHHHHHHhh--hC------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeeeec
Confidence 3578999999999983 21 224677777654 5999999999999988643 222333333
Q ss_pred cHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC--------CCcC--CCCceEEEEE
Q 004236 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD--------PEKL--LKRGTQITLY 233 (766)
Q Consensus 178 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~--------~~~~--~~~GT~I~L~ 233 (766)
.+ | . .+......|.+|+|+.++..+++.++ ..+ .++. ..+||+|++.
T Consensus 99 ~k-f----~----~~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~ 169 (390)
T 1kij_A 99 GK-F----E----QGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFK 169 (390)
T ss_dssp SG-G----G----GSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEE
T ss_pred cc-c----c----CccccccCCCCCcceeeecccccceEEEEecCCcEEEEEEcCCcccccceeeccccCCCCCcEEEEE
Confidence 32 2 1 11111245889999999999999774 111 0111 4689999986
Q ss_pred ecCCCcccc----cchHHHHHHHHhhCCCc--ccceeecc
Q 004236 234 LKEDDKYEF----SEPTRIQGLVKNYSQFV--SFPIYTWQ 267 (766)
Q Consensus 234 Lk~~~~~e~----~~~~~i~~li~~ys~fi--~~pI~~~~ 267 (766)
. +.. .| .+...|.+.++.++ |+ ..-|.+..
T Consensus 170 P--d~~-~F~~~~~~~~~l~~rl~~~A-~lnpgv~i~l~d 205 (390)
T 1kij_A 170 P--DPE-IFGNLRFDPSKIRARLREVA-YLVAGLKLVFQD 205 (390)
T ss_dssp E--CHH-HHTTCCCCHHHHHHHHHHHH-HHTTTCEEEEEE
T ss_pred E--ChH-HhCCccccHHHHHHHHHHhc-CcCCCcEEEEEe
Confidence 3 322 22 45677888888887 33 24445543
No 32
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.82 E-value=2.3e-05 Score=86.57 Aligned_cols=135 Identities=18% Similarity=0.222 Sum_probs=83.6
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH--------HHHhhhhhhcc
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIAQS 176 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~L~tIa~S 176 (766)
...+.|||-||.|+... ..--.|.|.++.+ +.|+|.|||.||+.++ +.-.|+.+-.+
T Consensus 33 ~~lv~ElvdNsiD~a~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhag 97 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCCEEEEEEecC-CEEEEEECCCCcCcccccccCcchhhheeeeeccc
Confidence 46889999999999731 1224677777655 4899999999999887 44444443333
Q ss_pred CcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC--------CCcCC--CCceEEEE
Q 004236 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD--------PEKLL--KRGTQITL 232 (766)
Q Consensus 177 g~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~--------~~~~~--~~GT~I~L 232 (766)
|+ | . .+...-.-|..|+|.-++=.++.+++ ..+ .+... .+||+|+.
T Consensus 98 sK--f----~----~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f 167 (390)
T 1s16_A 98 GK--F----S----NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHF 167 (390)
T ss_dssp SC--S----S----SSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECCTTCCEEEEEE
T ss_pred CC--c----C----CCcccccCCccccchHHHHHhhcccEEEEEECCcEEEEEEeCCcccccceecccccCCCCceEEEE
Confidence 33 1 1 11111235778999988888887654 111 01112 68999998
Q ss_pred EecCCCcccc----cchHHHHHHHHhhCCC-cccceeecc
Q 004236 233 YLKEDDKYEF----SEPTRIQGLVKNYSQF-VSFPIYTWQ 267 (766)
Q Consensus 233 ~Lk~~~~~e~----~~~~~i~~li~~ys~f-i~~pI~~~~ 267 (766)
. ++.. -| .+...|.+.++.++=. -..-|.+..
T Consensus 168 ~--Pd~~-~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d 204 (390)
T 1s16_A 168 W--PDET-FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 204 (390)
T ss_dssp E--ECGG-GSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred E--ECcc-ccCcccccHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7 3322 23 4567788888887632 234455543
No 33
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=97.81 E-value=9.2e-06 Score=94.55 Aligned_cols=134 Identities=23% Similarity=0.294 Sum_probs=80.0
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCC---cEEEEEeCCCCCCHHHHHHhhhhhhccCcHHH
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN---GTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~---~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f 181 (766)
...|+|||.||.||... ......|.|.+..++ ..|+|+|||.||+.+++...+... .++.+ |
T Consensus 39 ~~Vl~ELV~NAIDa~~~-------------~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~-~atsk-f 103 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEE-------------AGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKL-LYGSR-F 103 (621)
T ss_dssp HHHHHHHHHHHHHHHTT-------------TSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCC-CCC---C
T ss_pred HHHHHHHHHHHHHHHhh-------------cCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhh-ccCCc-c
Confidence 35689999999999831 112234555543332 579999999999999998755333 12221 1
Q ss_pred HHHhhhcccCCCCCCcccccccceeeeeeecce-------eEec----------------CC--C---------cCCCCc
Q 004236 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQK-------VEET----------------DP--E---------KLLKRG 227 (766)
Q Consensus 182 ~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~-------Ves~----------------~~--~---------~~~~~G 227 (766)
. ..+ ..-|.+|+|++++..+++. |++. .. . ....+|
T Consensus 104 ----~-----~~~-~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~G 173 (621)
T 2q2e_B 104 ----H-----ALK-QSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHG 173 (621)
T ss_dssp ----C-----CCC--CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSC
T ss_pred ----c-----ccc-ccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCC
Confidence 0 001 2238889999998887776 2210 00 0 013489
Q ss_pred eEEEEEecCCCcccccc--hHHHHHHHHhhCCC-cccceeecc
Q 004236 228 TQITLYLKEDDKYEFSE--PTRIQGLVKNYSQF-VSFPIYTWQ 267 (766)
Q Consensus 228 T~I~L~Lk~~~~~e~~~--~~~i~~li~~ys~f-i~~pI~~~~ 267 (766)
|+|++.++.+ |.. ...|.++++.|+-. -..-|.+..
T Consensus 174 T~V~~~f~~~----~~~~~~~~I~~~L~~lAllnpgv~I~L~d 212 (621)
T 2q2e_B 174 TQIELEMRAA----YVKGRRQSIYEYLKATAIVNPHARITLID 212 (621)
T ss_dssp CCEEEECSCC----CCCCSSSSSHHHHHHHHHHCCSCEEEECC
T ss_pred CEEEEEecCc----cchHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 9999998643 333 25677777777632 234445433
No 34
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=97.69 E-value=4.2e-05 Score=78.21 Aligned_cols=136 Identities=22% Similarity=0.286 Sum_probs=79.2
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH-------HHhhhhhhccC
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL-------VDCLGTIAQSG 177 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el-------~~~L~tIa~Sg 177 (766)
...++|||.||.|+... ..--.|.|.++.+ +.|+|+|||.||+.++. ...+.+.-..|
T Consensus 37 ~~lv~ElvdNsiDea~~--------------g~~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag 101 (220)
T 4duh_A 37 HHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 (220)
T ss_dssp HHHHHHHHHHHHHHHHH--------------SCCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeecccC
Confidence 57889999999999742 1223577777654 58999999999998763 12222222323
Q ss_pred cHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC----C----CcCCCCceEEEEEec
Q 004236 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD----P----EKLLKRGTQITLYLK 235 (766)
Q Consensus 178 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~----~----~~~~~~GT~I~L~Lk 235 (766)
.+ | . .+.-...-|..|+|.-++=.++++++ ..+ + +....+||+|+...
T Consensus 102 ~K-f----d----~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~~g~~~~~GT~V~F~P- 171 (220)
T 4duh_A 102 GK-F----D----DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWP- 171 (220)
T ss_dssp SC-C----C----TTC--------CCCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSSCEEEEECSCCEEEEEEEE-
T ss_pred CC-c----C----CCccccccCccceecchhcccccceEEEEEECCEEEEEEecCCcCcCCceeccccCCCCcEEEEEE-
Confidence 22 2 1 11111345777999888777777654 111 1 12347999999864
Q ss_pred CCCcccc-----cchHHHHHHHHhhCCCc--ccceeeccc
Q 004236 236 EDDKYEF-----SEPTRIQGLVKNYSQFV--SFPIYTWQE 268 (766)
Q Consensus 236 ~~~~~e~-----~~~~~i~~li~~ys~fi--~~pI~~~~~ 268 (766)
+.. -| ++.+.|.+.++.++ |+ ..-|.+.++
T Consensus 172 -d~~-~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 208 (220)
T 4duh_A 172 -SLE-TFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRDK 208 (220)
T ss_dssp -CTT-TCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEET
T ss_pred -CHH-HhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEcc
Confidence 333 33 34567888888887 44 345555543
No 35
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.69 E-value=5.1e-05 Score=83.85 Aligned_cols=136 Identities=20% Similarity=0.204 Sum_probs=83.3
Q ss_pred chhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH--------HHhhhhhhc
Q 004236 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL--------VDCLGTIAQ 175 (766)
Q Consensus 104 ~~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el--------~~~L~tIa~ 175 (766)
....+.|||-||.||..+ ..--.|.|.++.+ +.|+|+|||.||+.++. .-.|+..-.
T Consensus 35 l~~lv~ElvdNsiDea~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lha 99 (391)
T 1ei1_A 35 LHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 99 (391)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTE
T ss_pred HHHHHHHHHHhHHHHHhc--------------CCCCEEEEEEeCC-CEEEEEECCCCcccCcccccCcchHHHhheeccc
Confidence 456789999999999732 1123677777665 49999999999998873 223433333
Q ss_pred cCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC-----C---CcCCCCceEEEEE
Q 004236 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD-----P---EKLLKRGTQITLY 233 (766)
Q Consensus 176 Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~-----~---~~~~~~GT~I~L~ 233 (766)
+|+ | . .+.-.-.-|..|+|.-|+=.++.+++ ..+ . +....+||+|+..
T Consensus 100 gsK--f----~----~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~l~~~~~~~~~GT~V~f~ 169 (391)
T 1ei1_A 100 GGK--F----D----DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFW 169 (391)
T ss_dssp ESC--S----S----SSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEECSCCEEEEEEE
T ss_pred cCC--c----C----CCcccccCCccccchHHHHHhcCeEEEEEEeCCcEEEEEEcCCcccccceeccCcCCCccEEEEE
Confidence 333 1 1 11111244677999988888887664 111 0 1223699999987
Q ss_pred ecCCCcccc-----cchHHHHHHHHhhCCC-cccceeecc
Q 004236 234 LKEDDKYEF-----SEPTRIQGLVKNYSQF-VSFPIYTWQ 267 (766)
Q Consensus 234 Lk~~~~~e~-----~~~~~i~~li~~ys~f-i~~pI~~~~ 267 (766)
. +.. -| ++...|.+.++.++=. -..-|.+..
T Consensus 170 P--d~~-~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d 206 (391)
T 1ei1_A 170 P--SLE-TFTNVTEFEYEILAKRLRELSFLDSGVSIRLRD 206 (391)
T ss_dssp E--CTT-TCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred E--Chh-hhCCccccCHHHHHHHHHHhcccCCCcEEEEEc
Confidence 3 332 23 2456788888877632 234455543
No 36
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=97.57 E-value=0.00011 Score=75.32 Aligned_cols=137 Identities=19% Similarity=0.207 Sum_probs=80.0
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH-------HHHhhhhhhccCc
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE-------LVDCLGTIAQSGT 178 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e-------l~~~L~tIa~Sg~ 178 (766)
..++|+|.||.|+... ..--.|.|.++.+ ..|+|.|||.||+.++ +.-.|+.. ..|.
T Consensus 43 ~~v~Eiv~NaiD~~~~--------------g~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~l-hag~ 106 (226)
T 4emv_A 43 HLVWEIVDNAVDEALS--------------GFGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTIL-HAGG 106 (226)
T ss_dssp HHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCB-C---
T ss_pred HHHHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEee-cccC
Confidence 4668999999999731 1223677777664 5899999999999887 33223333 3333
Q ss_pred HHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC-C--------CcC--CCCceEEEEE
Q 004236 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD-P--------EKL--LKRGTQITLY 233 (766)
Q Consensus 179 ~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~-~--------~~~--~~~GT~I~L~ 233 (766)
+ |-+. .-...-|..|+|.-++=.++.+++ +.+ . ++. ..+||+|+..
T Consensus 107 K-fd~~--------~yk~SgGlhGvG~svvNALS~~l~v~v~r~g~~~~q~f~~Gg~~~~~l~~ig~~~~~~~GT~V~F~ 177 (226)
T 4emv_A 107 K-FGQG--------GYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFM 177 (226)
T ss_dssp --------------------CGGGCCHHHHHHTEEEEEEEEEETTEEEEEEEETTTEESSCSEEEEECCTTCCEEEEEEE
T ss_pred c-cCcc--------ceEeccccccccchhhhhcccceEEEEEeCCcEEEEEECCCCEEcCCceEecccCCCCCCeEEEEE
Confidence 2 3111 112345788999888777777654 112 1 112 4689999987
Q ss_pred ecCCC-cccccchHHHHHHHHhhCCCc--ccceeeccc
Q 004236 234 LKEDD-KYEFSEPTRIQGLVKNYSQFV--SFPIYTWQE 268 (766)
Q Consensus 234 Lk~~~-~~e~~~~~~i~~li~~ys~fi--~~pI~~~~~ 268 (766)
....- ...-++.+.|.+.++.++ |+ ..-|.+.++
T Consensus 178 PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 214 (226)
T 4emv_A 178 PDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLTDK 214 (226)
T ss_dssp ECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEEET
T ss_pred ECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEEec
Confidence 44321 001246677888888887 44 345666543
No 37
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.34 E-value=7e-05 Score=73.50 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=46.2
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..|.+||+||..+.. ....|.|...... |.|.|||.||+.+++.+.+.... ++
T Consensus 120 ~il~nLl~NAi~~~~----------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if~~f~-~~-------- 172 (222)
T 3jz3_A 120 LLVRNLLDNAVRYSP----------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIGERFY-RP-------- 172 (222)
T ss_dssp HHHHHHHHHHHHTCC----------------TTCEEEEEECSSE--EEEECSCC--------------------------
T ss_pred HHHHHHHHHHHHcCC----------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHHhhhc-cC--------
Confidence 366788999887641 1234666664433 99999999999998766432111 11
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.....+..|+|++-|--+++..- ...-....+.||+|++++-.
T Consensus 173 --------~~~~~~g~GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~ 216 (222)
T 3jz3_A 173 --------PGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLE 216 (222)
T ss_dssp -----------------CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCC
T ss_pred --------CCCCCCcccccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeecC
Confidence 01123568999887766665441 10112234789999999854
No 38
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=97.32 E-value=0.00021 Score=79.20 Aligned_cols=88 Identities=24% Similarity=0.278 Sum_probs=55.2
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH--------HHHhhhhhhccC
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIAQSG 177 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~L~tIa~Sg 177 (766)
..+.|||-||.|+..... .--.|.|.++.+++.|+|+|||.||+.++ +.-.|+..-.+|
T Consensus 55 ~lv~EivdNsiDe~~~~g-------------~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhags 121 (400)
T 1zxm_A 55 KIFDEILVNAADNKQRDP-------------KMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSS 121 (400)
T ss_dssp HHHHHHHHHHHHHHHHCT-------------TCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEES
T ss_pred HHHHHHHhhHHhHHhhcC-------------CCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeecccC
Confidence 467899999999973211 12357777766558999999999999876 222343333333
Q ss_pred cHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE
Q 004236 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE 216 (766)
Q Consensus 178 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve 216 (766)
+ | . .+.-.-.-|..|+|.-++=.++.+++
T Consensus 122 K--f----~----~~~ykvSgGlhGvGlsvVnAlS~~l~ 150 (400)
T 1zxm_A 122 N--Y----D----DDEKKVTGGRNGYGAKLCNIFSTKFT 150 (400)
T ss_dssp C--C----C----GGGCCCCSCCSSCHHHHHHHTEEEEE
T ss_pred C--C----C----CCcccccCCccccceeeeEEeccceE
Confidence 3 2 1 00011245777999877766666553
No 39
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=97.32 E-value=0.00041 Score=76.08 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=35.6
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV 167 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~ 167 (766)
...+.|||-||.||... ..--.|.|.++.+ +.|+|+|||.||+. |+.
T Consensus 32 ~~~v~ElvdNsiDe~~~--------------g~a~~I~V~i~~~-g~I~V~DnGrGIp~-e~v 78 (369)
T 3cwv_A 32 HHLVYFLLDVAYEEARR--------------GECRDVVLEVGGD-GSIALFCTSRTVTA-ENL 78 (369)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEEEESSCCH-HHH
T ss_pred HHHHHHHHhhhHhHHhh--------------CCCCEEEEEEeCC-CEEEEEECCCCcCH-hHe
Confidence 45789999999999731 1234677777655 49999999999999 443
No 40
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=97.24 E-value=0.00031 Score=77.88 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=73.8
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH-------HHhhhhhhccC
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL-------VDCLGTIAQSG 177 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el-------~~~L~tIa~Sg 177 (766)
...+.|+|.||.|+... ..--.|.|.++.+ +.|+|+|||.||+.+.. ...+.|....|
T Consensus 52 ~hlv~EivdNsiDea~a--------------g~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhag 116 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALA--------------GHAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAG 116 (408)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TSCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC---
T ss_pred chhhHHHHHHHHHHhhc--------------CCCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcchheEEEecccC
Confidence 66899999999999631 1223577777654 58999999999998762 22223333333
Q ss_pred cHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeE--------------ecC----------CCcCCCCceEEEEE
Q 004236 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE--------------ETD----------PEKLLKRGTQITLY 233 (766)
Q Consensus 178 ~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve--------------s~~----------~~~~~~~GT~I~L~ 233 (766)
.+ |-+. .-.-.-|..|+|.-++=.++.+++ +.+ +......||+|+..
T Consensus 117 gK-fd~~--------~ykvSgGlhGvG~svVNALS~~l~v~v~rdGk~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~ 187 (408)
T 3lnu_A 117 GK-FNNR--------NYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFW 187 (408)
T ss_dssp --------------------------CHHHHHHTEEEEEEEEEETTEEEEEEEETTEECSCCEEEEECCTTCCEEEEEEE
T ss_pred CC-cCCC--------ceeecCCccccccceehhccCeEEEEEEECCEEEEEEECCCEECCCceEeccCcCCCCCcEEEEE
Confidence 32 3111 111234777999887777777654 111 11123689999886
Q ss_pred ecCCC-cccccchHHHHHHHHhhCCC-cccceeecc
Q 004236 234 LKEDD-KYEFSEPTRIQGLVKNYSQF-VSFPIYTWQ 267 (766)
Q Consensus 234 Lk~~~-~~e~~~~~~i~~li~~ys~f-i~~pI~~~~ 267 (766)
....- ...-++.+.|.+.++.++=. -..-|.+.+
T Consensus 188 PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~d 223 (408)
T 3lnu_A 188 ADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHD 223 (408)
T ss_dssp ECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 43321 00124567777777776522 134556544
No 41
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.24 E-value=8.8e-05 Score=68.89 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=59.9
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..|.+||.||..+.. ..+.|.+..+.+.-.|+|.|||.||+.+++...+.. ..+++
T Consensus 47 ~il~nLl~NAi~~~~----------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~-~~~~~------- 102 (152)
T 1id0_A 47 EVMGNVLDNACKYCL----------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDR-GQRVD------- 102 (152)
T ss_dssp HHHHHHHHHHHHHCS----------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSC-CCCTT-------
T ss_pred HHHHHHHHHHHHhCc----------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhcc-ceecc-------
Confidence 355689999988751 134555555556678999999999999887653321 11100
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
..-+..|+|++.+--+++..- +-.-....+.||++++.|--
T Consensus 103 ----------~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~ 144 (152)
T 1id0_A 103 ----------TLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGR 144 (152)
T ss_dssp ----------CCCTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECC
T ss_pred ----------CCCCCcccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEec
Confidence 112568999987766665431 00001123579999999854
No 42
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.22 E-value=0.00019 Score=72.92 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=60.3
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..|.+||.||.++.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+.. ..+
T Consensus 158 ~il~nLl~NA~~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-~~~--------- 213 (268)
T 4ew8_A 158 QTLDHLVENALRQTP--------------PGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDR-FVG--------- 213 (268)
T ss_dssp HHHHHHHHHHHHHSC--------------TTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTST-TCC---------
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHH-Hhc---------
Confidence 467888999888751 12345555555555567999999999999887553311 110
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
..-+..|+|++.+--+++..- +..-....+.||+|++.|--
T Consensus 214 ----------~~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~ 255 (268)
T 4ew8_A 214 ----------RDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPE 255 (268)
T ss_dssp ----------CSSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEC
T ss_pred ----------CCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEecC
Confidence 112467999887766665431 00001123679999998854
No 43
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.19 E-value=0.00028 Score=77.18 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=64.1
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..|.+||.||..|...-.- .....+.+.|.+..+.+.-.|+|.|||.||+.+++.+-+...-+ +... ..
T Consensus 234 ~il~NLl~NAik~~~~~~~-------~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~-~~~~--~~- 302 (394)
T 2btz_A 234 HMLFELFKNAMRATVESHE-------SSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYS-TAPT--PQ- 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTT-------TCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTT-CCC------
T ss_pred HHHHHHHHHHHHHhhhccc-------cCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhccccc-CCCC--CC-
Confidence 4677999999999854110 00112345566655555567999999999999998775432211 1100 00
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecCC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKED 237 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~~ 237 (766)
.+......+.+|+|++-|-.+++..- +..-....+.||+++|+|.-.
T Consensus 303 -----~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~ 350 (394)
T 2btz_A 303 -----PGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKAL 350 (394)
T ss_dssp ----------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESS
T ss_pred -----cccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCC
Confidence 00012345779999998877776441 000011236799999998643
No 44
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.17 E-value=0.00021 Score=66.40 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=58.6
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..+.|||.||..+... . .....+.|.+..+.+.-.|+|.|||.||+ ++.+.+.. ..+++
T Consensus 42 ~il~~l~~Nai~h~~~--------~---~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~-~~~~~------- 100 (145)
T 1th8_A 42 TVVSEAVTNAIIHGYN--------N---DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQP-LFTTK------- 100 (145)
T ss_dssp HHHHHHHHHHHHTTST--------T---CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCC-C-----------
T ss_pred HHHHHHHHHHHHHhcC--------C---CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcc-cccCC-------
Confidence 4678999999876421 0 01234555555555556789999999999 44432211 11100
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeEecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVEETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves~~~~~~~~~GT~I~L~Lk~ 236 (766)
...+..|+|++-+-.+++++. - ....+.||+|++.+.-
T Consensus 101 ----------~~~~~~GlGL~iv~~~~~~i~-~--~~~~~~Gt~v~~~lp~ 138 (145)
T 1th8_A 101 ----------PELERSGMGFTIMENFMDEVI-V--ESEVNKGTTVYLKKHG 138 (145)
T ss_dssp -------------CCCSCHHHHHHHHSSEEE-E--EEETTTEEEEEEEECC
T ss_pred ----------CCCCCCcchHHHHHHHHheEE-E--EeCCCCCEEEEEEEec
Confidence 012457999988888888764 1 1123679999999854
No 45
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.15 E-value=0.00017 Score=67.05 Aligned_cols=97 Identities=19% Similarity=0.163 Sum_probs=56.0
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.|.+||.||..+. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+...-++.+
T Consensus 50 il~nLl~NA~~~~---------------~~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~-------- 106 (150)
T 1ysr_A 50 AVDNAIANAVKHG---------------GATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST-------- 106 (150)
T ss_dssp HHHHHHHHHHHTT---------------CCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC------------
T ss_pred HHHHHHHHHHhcC---------------CCcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCC--------
Confidence 4568999998763 11244555555555567999999999999988765432211100
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
..-+..|+|++-+--+++..- +..-......||++++.|-
T Consensus 107 ---------~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP 147 (150)
T 1ysr_A 107 ---------ASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLP 147 (150)
T ss_dssp ----------------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEE
T ss_pred ---------CCCCCCCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEe
Confidence 112457999988777766431 0000112356999999874
No 46
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.15 E-value=0.00018 Score=71.66 Aligned_cols=98 Identities=26% Similarity=0.400 Sum_probs=61.0
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..|.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+... .++
T Consensus 126 ~il~nLl~NA~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~-~~~-------- 182 (244)
T 3d36_A 126 QCLLNVMKNAIEAMP--------------NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPY-FTT-------- 182 (244)
T ss_dssp HHHHHHHHHHHHTCT--------------TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTT-CCS--------
T ss_pred HHHHHHHHHHHHhcc--------------CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhccc-ccC--------
Confidence 356788888887751 123455666666556679999999999999876643211 110
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
...+..|+|++.|--+++..- +..-....+.||++++.|--
T Consensus 183 ----------~~~~g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~ 224 (244)
T 3d36_A 183 ----------KGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPL 224 (244)
T ss_dssp ----------SGGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred ----------CCCCCcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecC
Confidence 112457999988777666441 00001123679999998753
No 47
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.13 E-value=7.9e-05 Score=71.51 Aligned_cols=101 Identities=24% Similarity=0.327 Sum_probs=58.1
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecC--CCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~ 184 (766)
.|.+||.||..+.. ....+.|.|.... +.-.|+|.|||.||+.+++...+.... ++..
T Consensus 47 il~nLl~NAi~~~~--------------~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~-~~~~----- 106 (177)
T 3sl2_A 47 VLDNIISNALKYSP--------------EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFY-RVDK----- 106 (177)
T ss_dssp HHHHHHHHHHHTCC--------------TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTC-CCC------
T ss_pred HHHHHHHHHHHhCC--------------CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhc-cCCC-----
Confidence 56789999987741 1344566664433 335689999999999988765332221 1111
Q ss_pred hhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEec
Q 004236 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 185 ~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk 235 (766)
......+..|+|++.+-.+++..- ...-......||+|++.|.
T Consensus 107 --------~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~lP 150 (177)
T 3sl2_A 107 --------ARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLP 150 (177)
T ss_dssp -------------CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEEE
T ss_pred --------CCCCCCCCCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEe
Confidence 011234578999987766665441 0000112356899888764
No 48
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.13 E-value=0.00014 Score=67.19 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=57.1
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.+.+||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+... .+
T Consensus 51 il~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~-~~---------- 105 (152)
T 3a0y_A 51 VLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPF-FT---------- 105 (152)
T ss_dssp HHHHHHHHHHHHHC--------------TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTT-CC----------
T ss_pred HHHHHHHHHHHhcC--------------CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhh-cc----------
Confidence 45689999998861 123445555555455678999999999998875533211 10
Q ss_pred hcccCCCCCCcccccccceeeeeeecc-eeEecCCCcCCCCceEEEEEecC
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ-KVEETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad-~Ves~~~~~~~~~GT~I~L~Lk~ 236 (766)
..-+..|+|++.+-.+++ ..-..-.....+.||++++.+.-
T Consensus 106 ---------~~~~g~GlGL~i~~~~~~~~~gg~~~~~~~~~g~~~~i~lP~ 147 (152)
T 3a0y_A 106 ---------TKTQGTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEIPK 147 (152)
T ss_dssp ---------CC--CCCCSHHHHHHHHHTTTSCEEEEEEETTEEEEEEEEES
T ss_pred ---------CCCCCCCcCHHHHHHHHHHhCCcEEEEecCCCCEEEEEEeCC
Confidence 012457999888766665 33100000111359999998753
No 49
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.10 E-value=0.00032 Score=77.16 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=68.0
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..|.+||.||..|...-.- + ....+.+.|.+..+.+.-.|+|.|||.||+.+++.+-+... .++...
T Consensus 246 ~il~NLl~NAik~t~~~~~----~---~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f-~~~~~~----- 312 (407)
T 2q8g_A 246 HMVFELFKNAMRATMEHHA----N---RGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYM-YSTAPR----- 312 (407)
T ss_dssp HHHHHHHHHHHHHHHHHST----T---TCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTT-TTCCCC-----
T ss_pred HHHHHHHHHHHHHHhhccc----c---CCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCcc-ccCCCC-----
Confidence 4578999999999854210 0 01123455555555555679999999999999987644221 111100
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
. .. ........|.+|+|++-|-.+++..- +..-....+.||+++|+|.-
T Consensus 313 ~-~~-~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 313 P-RV-ETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKA 362 (407)
T ss_dssp C-CS-SCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred C-Cc-cccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECC
Confidence 0 00 00122356789999988777766431 00001123689999999864
No 50
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.06 E-value=0.00034 Score=76.61 Aligned_cols=116 Identities=23% Similarity=0.218 Sum_probs=68.3
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..|.+||.||..|...-.-. ....+.+.|.+..+.+.-.|+|.|+|.||+.+++.+-+...- ++... ..+
T Consensus 233 ~il~NLl~NAik~~~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~-~~~~~--~~~ 302 (394)
T 2e0a_A 233 HMLFELFKNAMRATVEHQEN-------QPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTY-STAPT--PVM 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-------SSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTC-CSSCC--C--
T ss_pred HHHHHHHHHHHHHHHhcccc-------cCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCc-cCCCC--CCc
Confidence 46779999999998642100 011234556665555556799999999999999877443221 11100 000
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.+......+.+|+|++-|-.+++..- +..-....+.||+++++|.-
T Consensus 303 -----~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 303 -----DNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKA 349 (394)
T ss_dssp ---------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred -----CcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCC
Confidence 00122346789999998877776431 00001123689999999864
No 51
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.01 E-value=0.00013 Score=70.67 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=34.2
Q ss_pred HHHhHHhHHHHHHHH---HhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHH
Q 004236 108 LRELVSNASDALDKL---RFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV 167 (766)
Q Consensus 108 lRELIqNA~DA~~k~---r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~ 167 (766)
|.+||.||..+.... +...-+ .....+.|.+..+.+.-.|+|.|||.||+.+++.
T Consensus 52 l~nLl~NAik~~~~~~~~~~~~~~-----~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 52 LLHLLRNAIDHGIEPKEERIAKGK-----PPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHTS-----CSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccC-----CCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHh
Confidence 789999999985110 000000 1123344455445555678999999999999874
No 52
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.96 E-value=0.00026 Score=77.19 Aligned_cols=121 Identities=23% Similarity=0.283 Sum_probs=67.1
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHH-----
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSK----- 180 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~----- 180 (766)
..|.+||.||..|...-.- ......+.+.|.+..+.+.-.|+|.|||.||+.+++.+-+.. ..+++..
T Consensus 241 ~il~NLl~NAik~~~~~~~------~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~-f~~~~~~~~~~~ 313 (388)
T 1gkz_A 241 YILPELLKNAMRATMESHL------DTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDY-HFTTAEASTQDP 313 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCT------TCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTST-TCCCC-------
T ss_pred HHHHHHHHHHHHHhhcccc------CCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCc-ccccCCCccccc
Confidence 5788999999999864110 000112345566655555567999999999999887653321 1121110
Q ss_pred -----HHHHhhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 181 -----FLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 181 -----f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
|- .+... ........+.+|+|++-|-.+++..- +..-....+.||+++++|.-
T Consensus 314 ~~~~~~~-~~~~~--~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~ 372 (388)
T 1gkz_A 314 RISPLFG-HLDMH--SGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRH 372 (388)
T ss_dssp ---------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred ccccchh-hcccc--cccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecC
Confidence 10 00000 00112345779999998877777441 00001123689999999864
No 53
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=96.94 E-value=0.00037 Score=77.13 Aligned_cols=117 Identities=21% Similarity=0.200 Sum_probs=65.4
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHh
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~ 185 (766)
..|.+||.||..|...-.-. . ....+.+.|.+..+.+.-.|+|.|||.||+.+++.+-+...- ++... ..+
T Consensus 256 ~vl~NLl~NAik~~~~~~~~----~--~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~-~~~~~--~~~ 326 (419)
T 1y8o_A 256 HMLFELFKNSMRATVELYED----R--KEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMY-STAPR--PSL 326 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----C--SSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTT-C---------
T ss_pred HHHHHHHHHHHHHHHhhccc----c--CCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCccc-ccCCC--CCc
Confidence 46789999999998643210 0 001234556665555556799999999999999876443211 11110 000
Q ss_pred hhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.+......+.+|+|++-|-.+++..- +..-....+.||+++++|..
T Consensus 327 -----~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 327 -----EPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKA 373 (419)
T ss_dssp -----------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred -----cccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecC
Confidence 00122346779999988777766431 00001123689999999864
No 54
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=96.89 E-value=0.00018 Score=67.72 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=59.4
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.|.+||+||..+. ...+.|.+..+.+.-.|.|.|||.||+.+++.+.+... .++.
T Consensus 51 il~nll~NAik~~----------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f-~~~~-------- 105 (161)
T 1bxd_A 51 AVANMVVNAARYG----------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPF-VRGD-------- 105 (161)
T ss_dssp HHHHHHHHHHTTC----------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCC-CCCS--------
T ss_pred HHHHHHHHHHhhc----------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCc-eeCC--------
Confidence 4568899996542 23456666655555679999999999998875533211 1111
Q ss_pred hcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecC
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~ 236 (766)
.....+..|+|++-+--+++..- +..-......||++++.|--
T Consensus 106 -------~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~ 149 (161)
T 1bxd_A 106 -------SARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPV 149 (161)
T ss_dssp -------CCCCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECC
T ss_pred -------CCCCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeC
Confidence 11123568999988776666441 00001123579999998753
No 55
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.78 E-value=0.00039 Score=70.54 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=57.9
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEe--cCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~ 183 (766)
..|..||+||..+.. .......|.|.. +.+.-.|+|.|||.||+.+++.+.+...-+ +..
T Consensus 141 ~il~NLl~NAik~~~-------------~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~-~~~---- 202 (258)
T 2c2a_A 141 QVLLNLLNNGVKYSK-------------KDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYR-VDS---- 202 (258)
T ss_dssp HHHHHHHHHHHHTCC-------------TTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCC-CC-----
T ss_pred HHHHHHHHHHHhcCc-------------CCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhcccccc-CCC----
Confidence 356688999987641 011223455544 334456899999999999887654432211 110
Q ss_pred HhhhcccCCCCCCcccccccceeeeeeecceeE-ecCCCcCCCCceEEEEEecCC
Q 004236 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQKVE-ETDPEKLLKRGTQITLYLKED 237 (766)
Q Consensus 184 ~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ve-s~~~~~~~~~GT~I~L~Lk~~ 237 (766)
....-.+..|+|++-|--+++..- +..-....+.||++++.|-..
T Consensus 203 ---------~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~ 248 (258)
T 2c2a_A 203 ---------SLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKD 248 (258)
T ss_dssp -----------------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECC
T ss_pred ---------CCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCC
Confidence 001123458999987766665331 000011236899999998543
No 56
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.76 E-value=0.00063 Score=66.93 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=29.8
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL 166 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el 166 (766)
.++||++||..+. ....+.|.+..+.+.-.|+|.|||.||+.+.+
T Consensus 134 il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhC---------------CCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 5788889987664 12345566655555667999999999998876
No 57
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.76 E-value=0.00038 Score=63.52 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=31.9
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL 166 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el 166 (766)
.++||++||..+. ....+.|.+..+.+.-.|+|.|||.||+.+++
T Consensus 44 il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 44 CLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHhcC---------------CCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 5789999987653 12345566655555567899999999987654
No 58
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.53 E-value=0.00088 Score=70.28 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=54.9
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHHHhh
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~~~~ 186 (766)
.+.+||.||..+.. ..+.+.|.+..+.+.-.|+|.|||+||+.+++.+.+.. ..+.
T Consensus 248 vl~nLl~NA~k~~~--------------~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~-f~~~--------- 303 (349)
T 3a0r_A 248 VLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSP-FFTT--------- 303 (349)
T ss_dssp HHHHHHTHHHHTTC--------------TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSS-CCCC---------
T ss_pred HHHHHHHHHHHhcc--------------CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCC-CccC---------
Confidence 57788888887741 13455666665555567899999999999876543311 1110
Q ss_pred hcccCCCCCCcccccccceeeeeeecc-eeEecCCCcCCCCceEEEEEecC
Q 004236 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ-KVEETDPEKLLKRGTQITLYLKE 236 (766)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~Fmvad-~Ves~~~~~~~~~GT~I~L~Lk~ 236 (766)
.-+..|+|++.+--+++ ..-..-.....+.||++++.|--
T Consensus 304 ----------~~~g~GlGL~i~~~~v~~~~gg~i~~~~~~~Gt~f~i~lP~ 344 (349)
T 3a0r_A 304 ----------KTQGTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEIPK 344 (349)
T ss_dssp ----------------CCCTHHHHHHHHTTCSBCCEEECSSEEEEEEEEES
T ss_pred ----------CCCCccchHHHHHHHHHHhCCCEEEEEeCCCcEEEEEEecC
Confidence 11346899887766555 33100000112359999998843
No 59
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.42 E-value=0.00047 Score=64.08 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=45.4
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC----------CcEEEEEeCCCCCCHHHHHHhhhhhhcc
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE----------NGTITITDTGIGMTKEELVDCLGTIAQS 176 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~----------~~~l~I~DnGiGMt~~el~~~L~tIa~S 176 (766)
.+.+||.||..+... ....+.|.+..+.. .-.|+|.|||.||+.+++...+..
T Consensus 52 il~nLl~NAik~~~~-------------~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~---- 114 (160)
T 1r62_A 52 VLLNIVRNALQALGP-------------EGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYP---- 114 (160)
T ss_dssp HHHHHHHHHHHHHGG-------------GCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------------
T ss_pred HHHHHHHHHHHHhhc-------------cCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCc----
Confidence 456899999988731 02234444444333 346899999999999987653321
Q ss_pred CcHHHHHHhhhcccCCCCCCcccccccceeeeeeecceeEecCCCcCCCCceEEEEEe
Q 004236 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVEETDPEKLLKRGTQITLYL 234 (766)
Q Consensus 177 g~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves~~~~~~~~~GT~I~L~L 234 (766)
|. . ..-+..|+|++.+--+++..--.-.......||++++.|
T Consensus 115 ----~~---~---------~~~~g~GlGL~i~~~~~~~~gG~l~i~s~~~~~~~~i~l 156 (160)
T 1r62_A 115 ----MV---S---------GREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYL 156 (160)
T ss_dssp -------------------------CHHHHHHHHHHHHTTCEEEEEEETTEEEEEEEE
T ss_pred ----cc---c---------CCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCEEEEEEE
Confidence 10 0 001457899887766665431000001113348888876
No 60
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.37 E-value=0.00047 Score=62.33 Aligned_cols=43 Identities=42% Similarity=0.529 Sum_probs=31.6
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e 165 (766)
.++|||+||..+. ....+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 47 il~nll~NA~k~~---------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 47 VVREAVSNAVRHA---------------AASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHCCCCS---------------SCCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHhC---------------CCceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 4678899987663 12346666666666 7889999999998665
No 61
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=96.22 E-value=0.0061 Score=67.87 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=36.0
Q ss_pred hHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH
Q 004236 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (766)
Q Consensus 106 vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e 165 (766)
..+.|+|-||+|+..... .--.|.|.++.+++.|+|+|||.||+.+.
T Consensus 67 ~lv~EivdNaiDe~~~~g-------------~~~~I~V~i~~d~~sI~V~DnGrGIPv~~ 113 (418)
T 1pvg_A 67 KIFDEILVNAADNKVRDP-------------SMKRIDVNIHAEEHTIEVKNDGKGIPIEI 113 (418)
T ss_dssp HHHHHHHHHHHHHHHHCT-------------TCCEEEEEEETTTTEEEEEEESSCCCCSB
T ss_pred HHHHHHHhCHHHHHHhcC-------------CCCEEEEEEECCCCEEEEEECCCcccCcc
Confidence 367899999999974311 22367777777768999999999998665
No 62
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.14 E-value=0.0037 Score=68.31 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=34.3
Q ss_pred HHHhHHhHHHHH----HHHHhhhccCCCCCCCCCCceEEEE--ecCCCcEEEEEeCCCCCCHHHHH
Q 004236 108 LRELVSNASDAL----DKLRFLSVTEPSLLGDAGDLEIRIK--PDPENGTITITDTGIGMTKEELV 167 (766)
Q Consensus 108 lRELIqNA~DA~----~k~r~~~~~~~~~~~~~~~~~I~I~--~d~~~~~l~I~DnGiGMt~~el~ 167 (766)
|.+||.||.|+. +.|+.. +......|.|. .+.+.-.|+|.|||.||+.+.+.
T Consensus 111 l~nLl~NAi~h~~e~~~~r~~~--------gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~ 168 (379)
T 1b3q_A 111 LLHLLRNAIDHGIEPKEERIAK--------GKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 168 (379)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHT--------TCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHhc--------CCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHH
Confidence 789999999996 222211 11223445544 44444568999999999999874
No 63
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.061 Score=66.91 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=32.5
Q ss_pred HHHHhHHhHHH-HHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCH
Q 004236 107 FLRELVSNASD-ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTK 163 (766)
Q Consensus 107 flRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ 163 (766)
.+-|.|.||+| |+ + + ..--.|.|+++.+++.|+|+|||-||+-
T Consensus 63 l~~EildNsiDea~---a----------g-~~~~~I~V~i~~~d~sisV~DnGRGIPv 106 (1177)
T 4gfh_A 63 IFDEILVNAADNKV---R----------D-PSMKRIDVNIHAEEHTIEVKNDGKGIPI 106 (1177)
T ss_dssp HHHHHHHHHHHHHH---H----------C-TTCCEEEEEEETTTTEEEEEECSSCCCC
T ss_pred EeeEEEEChHhHHh---h----------C-CCCCeEEEEEECCCCEEEEEecCCcccc
Confidence 56799999999 43 2 0 1112588888877899999999999974
No 64
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=94.45 E-value=0.033 Score=55.85 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=33.2
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHH
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 164 (766)
...++|||-||.|+... ..--.|.|.++.+ +.|+|.|||.||+.+
T Consensus 33 ~~~v~Elv~NsiD~~~a--------------g~~~~I~V~i~~~-g~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 33 HHLVWEIVDNSIDEALA--------------GYANQIEVVIEKD-NWIKVTDNGRGIPVD 77 (198)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TSCCEEEEEEEGG-GEEEEEECSSCCCCS
T ss_pred HHHHHHHHHHHHhHHhc--------------CCCcEEEEEEeCC-CeEEEEECCCCcccc
Confidence 56789999999998531 1123566666544 599999999999875
No 65
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=94.37 E-value=0.017 Score=51.59 Aligned_cols=43 Identities=30% Similarity=0.502 Sum_probs=31.1
Q ss_pred HHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCCCcEEEEEeCCCCCCHHH
Q 004236 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (766)
Q Consensus 107 flRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e 165 (766)
.++||++||..+. ....+.|.+..+.+ -.|+|+|||.||+.+.
T Consensus 43 il~nll~Na~k~~---------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 43 VLREAVSNAVRHA---------------NATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHTCT---------------TCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHhC---------------CCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 5688899986543 12345666665656 7899999999998776
No 66
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=94.36 E-value=0.0095 Score=60.77 Aligned_cols=78 Identities=12% Similarity=0.020 Sum_probs=42.4
Q ss_pred CCCceEEEEecCCCcEEEEEeCCCC--CCHHHHHHhhhhhhccCcHHHHHHhhhcccCCCCCCcccccccceeeeeeecc
Q 004236 136 AGDLEIRIKPDPENGTITITDTGIG--MTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (766)
Q Consensus 136 ~~~~~I~I~~d~~~~~l~I~DnGiG--Mt~~el~~~L~tIa~Sg~~~f~~~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad 213 (766)
.+.+.|.+..+.+...|+|+|+|.| +..+.+...+..- .....+--|+|++-|--+++
T Consensus 165 gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~--------------------~~~~~~G~GLGLai~~~iv~ 224 (247)
T 4fpp_A 165 GGVATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEP--------------------LAEGLGGPWVQAAYLNALVR 224 (247)
T ss_dssp CCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHHHHTTCC--------------------CCSSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHHHhcCCC--------------------CCCCCCCccHHHHHHHHHHH
Confidence 3455666666656677899999976 6655444433210 01112345999886544444
Q ss_pred eeE-ecCCCcCCCCceEEEEEe
Q 004236 214 KVE-ETDPEKLLKRGTQITLYL 234 (766)
Q Consensus 214 ~Ve-s~~~~~~~~~GT~I~L~L 234 (766)
.-- +. ..+..+.||++++.|
T Consensus 225 ~hGG~i-~v~s~~~G~~f~v~L 245 (247)
T 4fpp_A 225 AAGGQI-AVEIGEDRASIAAWV 245 (247)
T ss_dssp HTTCEE-EEEEETTEEEEEEEE
T ss_pred HcCCEE-EEEEcCCEEEEEEEe
Confidence 220 00 001123599999987
No 67
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=82.22 E-value=1.1 Score=49.14 Aligned_cols=85 Identities=18% Similarity=0.128 Sum_probs=48.4
Q ss_pred hhHHHHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEecCC-CcEEEEEeCCCCCCHHHHHHhhhhhhccCcHHHHH
Q 004236 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (766)
Q Consensus 105 ~vflRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~L~tIa~Sg~~~f~~ 183 (766)
...+.||+.||..+- | + ....+.+.|++..+.+ .-.|+|.|+|.|++.. +.
T Consensus 299 ~l~v~El~~Nav~Ha----~-----~--~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~------ 350 (399)
T 3ke6_A 299 VHAISEFVENAVEHG----Y-----A--TDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG------ 350 (399)
T ss_dssp HHHHHHHHHHHHHHB----C-----C--SCCTTCEEEEEEECTTSEEEEEEEESCBC-----------------------
T ss_pred HHHHHHHHHHHHHhc----c-----c--CCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC------
Confidence 468999999998774 1 0 0123456666666543 4578999999999765 00
Q ss_pred HhhhcccCCCCCCcccccccceeeeeeecceeEecCCCcCCCCceEEEEEec
Q 004236 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQKVEETDPEKLLKRGTQITLYLK 235 (766)
Q Consensus 184 ~~~~~~~~~~~~~~IGqFGIGf~S~Fmvad~Ves~~~~~~~~~GT~I~L~Lk 235 (766)
. +.-|.|++-+=.+|+++.- ...+.||+|++.+.
T Consensus 351 -------~-------~~~G~GL~lv~~l~~~~~~----~~~~~G~~v~~~~~ 384 (399)
T 3ke6_A 351 -------A-------RGRGRGLAMAEALVSEARI----MHGAGGTTATLTHR 384 (399)
T ss_dssp --------------------CHHHHHTTSSEEEE----EEETTEEEEEEEEE
T ss_pred -------C-------CCCCcHHHHHHHHHHheee----EECCCcEEEEEEEE
Confidence 0 2235555555556676631 12256999998875
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=71.51 E-value=2.4 Score=41.97 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=35.5
Q ss_pred HHhHHhHHHHHHHHHhhhccCCCCCCCCCCceEEEEec--CCCcEEEEEeCCCCCCHHHHHHhh
Q 004236 109 RELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD--PENGTITITDTGIGMTKEELVDCL 170 (766)
Q Consensus 109 RELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d--~~~~~l~I~DnGiGMt~~el~~~L 170 (766)
-.||.||.+|++... .+ .....+.|.|..+ .+.-.+.|.|+|.|++.+.+.+.|
T Consensus 111 gnLi~na~~Ai~~~~-----~~---~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if 166 (192)
T 1ixm_A 111 AKLMRKLFHLFDQAV-----SR---ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIR 166 (192)
T ss_dssp HHHHHHHHHHHHHHB-----CT---TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---
T ss_pred HHHHHHHHHHHHhhh-----cc---CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHH
Confidence 448999999987531 11 1234456666655 556788999999999988765544
No 69
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=40.69 E-value=56 Score=28.02 Aligned_cols=57 Identities=16% Similarity=0.367 Sum_probs=42.2
Q ss_pred CHHHHHHhcccCCCe-EEEEecCCHHHHhcCcchHHHhhcC--ceEEecCCcchHHHHHHHhhc
Q 004236 499 SLDEYVENMGEKQNA-IYYLATDSLKSAKSAPFLEKLVQKD--IEVLYLIEPIDEVAIQNLQTF 559 (766)
Q Consensus 499 SL~eYv~rmke~Qk~-IYYi~~~s~~~~~~SP~lE~~~~kG--~EVL~l~dpiDE~~lq~L~ey 559 (766)
.+.+.+..||.+.|. +.|+.|.|-.++.. |-...++.| |+||--+|| |.+.|.+++|
T Consensus 39 dirdiiksmkdngkplvvfvngasqndvne--fqneakkegvsydvlkstdp--eeltqrvref 98 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKPLVVFVNGASQNDVNE--FQNEAKKEGVSYDVLKSTDP--EELTQRVREF 98 (112)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSCCHHHHHH--HHHHHHHHTCEEEEEECCCH--HHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEEEecCcccccHHH--HHHHHHhcCcchhhhccCCH--HHHHHHHHHH
Confidence 467889999998775 66888988666654 444555555 789998886 6677887776
Done!