Query 004237
Match_columns 766
No_of_seqs 359 out of 827
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 18:41:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 4.7E-30 1.6E-34 239.8 13.8 114 119-232 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 1.5E-16 5.1E-21 151.7 11.7 96 124-229 46-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 3.5E-13 1.2E-17 120.7 10.4 94 124-228 8-101 (104)
4 1na6_A Ecorii, restriction end 95.9 0.01 3.5E-07 64.9 6.8 92 124-216 18-123 (404)
5 1vd2_A Protein kinase C, IOTA 92.3 0.18 6.3E-06 44.8 5.6 55 692-753 7-61 (89)
6 2ktr_A Sequestosome-1; autopha 91.4 0.13 4.4E-06 48.0 3.7 59 689-754 18-93 (117)
7 2kkc_A Sequestosome-1; P62, PB 91.0 0.15 5.1E-06 46.4 3.7 59 690-755 4-79 (102)
8 1wmh_B Partitioning defective- 89.0 0.56 1.9E-05 41.6 5.5 56 692-754 7-63 (86)
9 1q1o_A Cell division control p 82.0 1.7 6E-05 39.3 5.2 63 692-756 6-75 (98)
10 1pqs_A Cell division control p 77.2 2.4 8.1E-05 36.7 4.3 47 708-756 8-54 (77)
11 2bkf_A Zinc-finger protein NBR 66.9 8.6 0.00029 34.2 5.5 53 692-753 7-60 (87)
12 1wj6_A KIAA0049 protein, RSGI 62.7 9 0.00031 34.9 4.9 53 692-753 15-68 (101)
13 2k8i_A SLYD, peptidyl-prolyl C 61.2 24 0.00083 34.1 8.1 102 205-321 3-114 (171)
14 2kfw_A FKBP-type peptidyl-prol 57.6 13 0.00045 36.9 5.6 127 205-361 3-139 (196)
15 3cgm_A SLYD, peptidyl-prolyl C 57.5 28 0.00094 33.3 7.7 100 205-321 3-110 (158)
16 2kr7_A FKBP-type peptidyl-prol 55.7 49 0.0017 31.1 9.0 105 202-321 4-119 (151)
17 4dt4_A FKBP-type 16 kDa peptid 49.5 37 0.0013 32.9 7.2 105 204-321 24-138 (169)
18 1oey_A P67-PHOX, neutrophil cy 44.7 25 0.00087 30.8 4.7 60 692-760 6-66 (83)
19 3p8d_A Medulloblastoma antigen 38.4 40 0.0014 28.5 4.8 53 290-360 5-57 (67)
20 3pr9_A FKBP-type peptidyl-prol 38.3 1.6E+02 0.0056 28.0 9.6 105 205-321 2-123 (157)
21 1oey_J P40-PHOX, neutrophil cy 38.1 42 0.0014 30.9 5.1 40 707-755 28-67 (107)
22 3s6w_A Tudor domain-containing 33.0 37 0.0013 26.5 3.6 28 291-321 1-28 (54)
23 2equ_A PHD finger protein 20-l 33.0 41 0.0014 28.7 4.1 39 290-342 8-46 (74)
24 4a4f_A SurviVal of motor neuro 32.6 40 0.0014 27.4 3.8 42 290-343 7-48 (64)
25 1mhn_A SurviVal motor neuron p 32.4 44 0.0015 26.7 3.9 28 291-321 3-30 (59)
26 3qii_A PHD finger protein 20; 31.8 53 0.0018 29.1 4.6 54 290-361 20-73 (85)
27 2e63_A KIAA1787 protein; struc 30.8 31 0.0011 33.5 3.4 25 202-226 115-139 (170)
28 2jng_A Cullin-7, CUL-7; P53 bi 30.7 46 0.0016 30.6 4.2 73 274-361 6-78 (105)
29 2k75_A Uncharacterized protein 24.7 1.2E+02 0.004 26.9 5.7 46 164-229 39-88 (106)
30 1g5v_A SurviVal motor neuron p 24.6 62 0.0021 28.4 3.8 29 290-321 9-37 (88)
31 2yue_A Protein neuralized; str 23.4 64 0.0022 31.3 4.0 21 206-226 107-127 (168)
32 3m7a_A Uncharacterized protein 22.1 68 0.0023 30.4 3.8 47 164-213 83-140 (140)
33 1e8p_A Endoglucanase, dockerin 22.1 29 0.00098 27.6 1.0 14 740-753 20-33 (46)
34 2cbp_A Cucumber basic protein; 21.1 44 0.0015 29.4 2.2 18 200-217 19-36 (96)
35 3o27_A Putative uncharacterize 20.1 68 0.0023 27.4 3.0 41 188-229 23-64 (68)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=4.7e-30 Score=239.76 Aligned_cols=114 Identities=29% Similarity=0.462 Sum_probs=105.1
Q ss_pred CCCCCceeEEEeecccCCCCCCceeechhhHhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCcceeecccccc
Q 004237 119 PSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSV 198 (766)
Q Consensus 119 ~~~~~~~~F~K~LT~SDv~~~GrfsVPk~~AE~~FPpLd~~~~~p~q~L~~~D~~G~~W~FR~iyrg~prrhlLTtGWs~ 198 (766)
..+....+|+|+||+|||++++||+||+++||.|||.++..+..++++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 45667889999999999999999999999999999999987777889999999999999999999999999999999999
Q ss_pred cccccCCCCCCEEEEEEcc--CCcEEEEEEecCCCC
Q 004237 199 FVSAKRLVAGDSVLFIWNE--KNQLLLGIRRAIRPP 232 (766)
Q Consensus 199 FV~~K~L~aGDsVvF~R~~--~g~L~vGIRRa~r~~ 232 (766)
||++|+|++||+|+|+|.+ +++|+||+||+.++.
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 9999999999999999986 468999999998764
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.68 E-value=1.5e-16 Score=151.74 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=85.3
Q ss_pred ceeEEEeecccCCCCCCceeechhhHhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCcceeeccccccccccc
Q 004237 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (766)
Q Consensus 124 ~~~F~K~LT~SDv~~~GrfsVPk~~AE~~FPpLd~~~~~p~q~L~~~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K 203 (766)
..+|.|+||+||+.+..++.||+++|+.+||..+ ..+.+.|. |+.|+|+|+|++. ++.|++||..||+++
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn 115 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLEN 115 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHT
T ss_pred CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHHc
Confidence 5599999999999887789999999999999753 56888888 6999999999974 699999999999999
Q ss_pred CCCCCCEEEEEEccCC--cEEEEEEecC
Q 004237 204 RLVAGDSVLFIWNEKN--QLLLGIRRAI 229 (766)
Q Consensus 204 ~L~aGDsVvF~R~~~g--~L~vGIRRa~ 229 (766)
+|++||.++|...++. .+.|.|-|+.
T Consensus 116 ~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 116 NLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp TCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999998765 5788998875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.44 E-value=3.5e-13 Score=120.73 Aligned_cols=94 Identities=21% Similarity=0.363 Sum_probs=81.1
Q ss_pred ceeEEEeecccCCCCCCceeechhhHhhhCCCCCCCCCCCceEEEEEecCCCeEEEEEEEeCCCcceeeccccccccccc
Q 004237 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (766)
Q Consensus 124 ~~~F~K~LT~SDv~~~GrfsVPk~~AE~~FPpLd~~~~~p~q~L~~~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K 203 (766)
...|.|+|+++| ...++.||++.++.+.+.+ ...+.++|..|++|++++.+++ +++.|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~--~~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEK--SSKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHH--HTTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCC--ccceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 458999999999 3569999999998866543 3578999999999999999874 4789999999999999
Q ss_pred CCCCCCEEEEEEccCCcEEEEEEec
Q 004237 204 RLVAGDSVLFIWNEKNQLLLGIRRA 228 (766)
Q Consensus 204 ~L~aGDsVvF~R~~~g~L~vGIRRa 228 (766)
+|++||.++|...++..+.|-|=|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECC
Confidence 9999999999999888888877553
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.88 E-value=0.01 Score=64.94 Aligned_cols=92 Identities=24% Similarity=0.341 Sum_probs=67.0
Q ss_pred ceeEEEeecccCCCCCC----ceeechhhHhhhCCCCC-CCCCCCceEEEE--EecCCCeEEEEEEEeC------CCcce
Q 004237 124 TNYFCKTLTASDTSTHG----GFSVPRRAAEKVFPSLD-FSLQPPAQELIA--RDLHDVEWKFRHIFRG------QPKRH 190 (766)
Q Consensus 124 ~~~F~K~LT~SDv~~~G----rfsVPk~~AE~~FPpLd-~~~~~p~q~L~~--~D~~G~~W~FR~iyrg------~prrh 190 (766)
...|+|.|++.|++..| +|.+|+...+.+||.|+ .....|.+.+.+ -|...-++.++.+|.+ ++..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 57899999999999774 79999988999999998 334456555543 3444455599999997 45568
Q ss_pred eecccccc-cccccCCCCCCEEEEEEc
Q 004237 191 LLTTGWSV-FVSAKRLVAGDSVLFIWN 216 (766)
Q Consensus 191 lLTtGWs~-FV~~K~L~aGDsVvF~R~ 216 (766)
.||. |.. +.=.....+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 9973 332 334477789999888744
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=92.35 E-value=0.18 Score=44.76 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=42.2
Q ss_pred ceEEEecccccccccccCCCCChHHHHHHHHhhhcCCCcccCCCCCccEEEEEeCCCCeEee
Q 004237 692 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 753 (766)
Q Consensus 692 ~fVKV~m~G~igRkiDL~~~~sY~eL~~~L~~MFg~eg~l~d~~~s~~~lvYeD~EGD~mLv 753 (766)
.=||++-.|.+ |-+.+..--+|++|..+|.++|++. ....+++.|.|.|||+.-+
T Consensus 7 vkvK~~~~gdi-~~~~v~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 7 VRVKAYYRGDI-MITHFEPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp EEEEEESSSCE-EEEEECTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSCCEEC
T ss_pred EEEEEEeCCeE-EEEECCCCCCHHHHHHHHHHHhCCC------CCCeEEEEEECCCCCcccc
Confidence 56888999942 2344444569999999999999974 2345899999999998654
No 6
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=91.40 E-value=0.13 Score=47.97 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=41.8
Q ss_pred CCcceEEEeccc-----ccccccccC-----------CCCChHHHHHHHHhhhc-CCCcccCCCCCccEEEEEeCCCCeE
Q 004237 689 PTRTFVKVYKSG-----SVGRSLDIS-----------RFSSYNELREELGQMFG-IEGKFEDPLRSGWQLVFVDRENDVL 751 (766)
Q Consensus 689 ~~~~fVKV~m~G-----~igRkiDL~-----------~~~sY~eL~~~L~~MFg-~eg~l~d~~~s~~~lvYeD~EGD~m 751 (766)
..++=||++-.| .==|++-|. .-.+|++|+..+.++|. +. ...|+|.|.|.|||..
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-------~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-------PGGFQAHYRAERGDLV 90 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-------SSCEEEEEECTTCCEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-------CCcEEEEEECCCCCEE
Confidence 456789999875 112444443 13599999999999994 43 2359999999999987
Q ss_pred eec
Q 004237 752 LLG 754 (766)
Q Consensus 752 LvG 754 (766)
-+-
T Consensus 91 tIS 93 (117)
T 2ktr_A 91 AFS 93 (117)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=91.05 E-value=0.15 Score=46.40 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=41.6
Q ss_pred CcceEEEeccc-----ccccccccCC-----------CCChHHHHHHHHhhhc-CCCcccCCCCCccEEEEEeCCCCeEe
Q 004237 690 TRTFVKVYKSG-----SVGRSLDISR-----------FSSYNELREELGQMFG-IEGKFEDPLRSGWQLVFVDRENDVLL 752 (766)
Q Consensus 690 ~~~fVKV~m~G-----~igRkiDL~~-----------~~sY~eL~~~L~~MFg-~eg~l~d~~~s~~~lvYeD~EGD~mL 752 (766)
.++=||+|-.| .-=|.+-+.. ..+|++|+..+.++|. +. ...++|.|.|.|||..-
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~-------~~~f~l~Y~DedGDlIt 76 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR-------PGGFQAHYRAERGDLVA 76 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-------SSCEEEEEECTTCCEEE
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC-------CCcEEEEEECCCCCEEE
Confidence 35678888865 1224444432 2489999999999995 32 23599999999999876
Q ss_pred ecC
Q 004237 753 LGD 755 (766)
Q Consensus 753 vGD 755 (766)
+.+
T Consensus 77 iSs 79 (102)
T 2kkc_A 77 FSS 79 (102)
T ss_dssp ECS
T ss_pred ecC
Confidence 654
No 8
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=88.96 E-value=0.56 Score=41.61 Aligned_cols=56 Identities=23% Similarity=0.223 Sum_probs=42.0
Q ss_pred ceEEEeccccccc-ccccCCCCChHHHHHHHHhhhcCCCcccCCCCCccEEEEEeCCCCeEeec
Q 004237 692 TFVKVYKSGSVGR-SLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLG 754 (766)
Q Consensus 692 ~fVKV~m~G~igR-kiDL~~~~sY~eL~~~L~~MFg~eg~l~d~~~s~~~lvYeD~EGD~mLvG 754 (766)
.=||..-++.+=| ++|-+.-.+|++|...|+++|.+. ..++++.|.|.+||++-.-
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpIn 63 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLT 63 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-------CCCEEEEEECCCCCEeeec
Confidence 3466666664433 556566789999999999999852 2359999999999998653
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=81.98 E-value=1.7 Score=39.31 Aligned_cols=63 Identities=13% Similarity=0.279 Sum_probs=46.3
Q ss_pred ceEEEeccc-----ccc--cccccCCCCChHHHHHHHHhhhcCCCcccCCCCCccEEEEEeCCCCeEeecCc
Q 004237 692 TFVKVYKSG-----SVG--RSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDD 756 (766)
Q Consensus 692 ~fVKV~m~G-----~ig--RkiDL~~~~sY~eL~~~L~~MFg~eg~l~d~~~s~~~lvYeD~EGD~mLvGDv 756 (766)
.-|||+-.. +++ |.|=+..--+|++|...+.+-|++. ..++ .....+|-|+|.|||+..++++
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~-~~~~-i~~~~klkYkDEdGD~Vtl~sd 75 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT-HNNN-ISPITKIKYQDEDGDFVVLGSD 75 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH-CSSC-CCCCCCEEEECSSSCEEEECSH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC-cccc-ccceeEEEEEcCCCCEEEEcCH
Confidence 567777552 234 6777788889999999999999975 1111 1234799999999999887764
No 10
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=77.16 E-value=2.4 Score=36.72 Aligned_cols=47 Identities=13% Similarity=0.352 Sum_probs=35.0
Q ss_pred cCCCCChHHHHHHHHhhhcCCCcccCCCCCccEEEEEeCCCCeEeecCc
Q 004237 708 ISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDD 756 (766)
Q Consensus 708 L~~~~sY~eL~~~L~~MFg~eg~l~d~~~s~~~lvYeD~EGD~mLvGDv 756 (766)
+..--+|++|...+.+-|++. ..+..+....|-|.|.|||+...+++
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~--~~~~~~~~~~lkYkDEdGD~Vti~sd 54 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT--HNNNISPITKIKYQDEDGDFVVLGSD 54 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT--TSSCSCSTTCCEEEETTTEEEECCST
T ss_pred eCCCCCHHHHHHHHHHHHccc--ccccccceeEEEEEcCCCCEEEEcCH
Confidence 445568999999999999974 11111345799999999999877654
No 11
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=66.88 E-value=8.6 Score=34.21 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=41.3
Q ss_pred ceEEEeccc-ccccccccCCCCChHHHHHHHHhhhcCCCcccCCCCCccEEEEEeCCCCeEee
Q 004237 692 TFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 753 (766)
Q Consensus 692 ~fVKV~m~G-~igRkiDL~~~~sY~eL~~~L~~MFg~eg~l~d~~~s~~~lvYeD~EGD~mLv 753 (766)
.=+||+-.| ..=--|.-..--++++|...+..+||++ ++++.|-|.|||-.-|
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---------~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---------SEEEEEECTTSCEEEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---------ceEEEEEcCCCCEEEE
Confidence 347888888 4333465555678999999999999984 4799999999998654
No 12
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=62.69 E-value=9 Score=34.93 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=42.5
Q ss_pred ceEEEeccc-ccccccccCCCCChHHHHHHHHhhhcCCCcccCCCCCccEEEEEeCCCCeEee
Q 004237 692 TFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 753 (766)
Q Consensus 692 ~fVKV~m~G-~igRkiDL~~~~sY~eL~~~L~~MFg~eg~l~d~~~s~~~lvYeD~EGD~mLv 753 (766)
.=+||+-.| ..=--|.-..--++++|...+..+|+++ .+++.|-|.|||-.-|
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---------~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 68 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---------SBCCEEECTTSCEECC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---------ceEEEEecCCCCEEEE
Confidence 467999999 4333575556779999999999999984 4799999999997654
No 13
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=61.22 E-value=24 Score=34.12 Aligned_cols=102 Identities=22% Similarity=0.235 Sum_probs=63.0
Q ss_pred CCCCCEEEE-EEc--cCCcEEEEEEecCCCCCCCCCccc-cCCccchhHHHHHHHHHhcCCcEEEEEccCCC------CC
Q 004237 205 LVAGDSVLF-IWN--EKNQLLLGIRRAIRPPTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRAS------PS 274 (766)
Q Consensus 205 L~aGDsVvF-~R~--~~g~L~vGIRRa~r~~~~~pssv~-s~~sm~~gvla~Aa~aaa~~~~F~V~Y~PRas------~s 274 (766)
.+.||.|.+ |+. .+|+.+-.-+.. .|..+. ....+--| +.+|......|..++|.--|-.. ..
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 567888877 443 477766543311 233322 22222223 56677777788888887765432 23
Q ss_pred cceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 004237 275 EFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (766)
Q Consensus 275 EFVVp~~kyvkA~~~~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd 321 (766)
-+.||++.|-.. ..+.+||+|.+ ++++. + ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTTS---SCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCcc---cCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 468888887422 36999999985 55553 2 6899999975
No 14
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=57.63 E-value=13 Score=36.86 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=74.8
Q ss_pred CCCCCEEEE-EE--ccCCcEEEEEEecCCCCCCCCCccc-cCCccchhHHHHHHHHHhcCCcEEEEEccCC------CCC
Q 004237 205 LVAGDSVLF-IW--NEKNQLLLGIRRAIRPPTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRA------SPS 274 (766)
Q Consensus 205 L~aGDsVvF-~R--~~~g~L~vGIRRa~r~~~~~pssv~-s~~sm~~gvla~Aa~aaa~~~~F~V~Y~PRa------s~s 274 (766)
.+.||.|.+ |+ .++|+++-.-+.. .|..++ ....+- --|.+|......|..++|.--|-. ...
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vi-pG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLI-SGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSSC-HHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCcc-hHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 568999877 43 3577766543211 233322 222232 235666767778888888866543 334
Q ss_pred cceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCcccc
Q 004237 275 EFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLW 354 (766)
Q Consensus 275 EFVVp~~kyvkA~~~~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd~Dp~rWp~S~WR~L~V~WDe~~~~~~~~RVSPW 354 (766)
-+.||++.|... ..+.+||+|.+ ++++- .+.++|+.|.+- .+.|.-.-|-+++. =-.
T Consensus 76 V~~vp~~~f~~~---~~~~~G~~~~~--~~~~G---~~~~~V~~v~~~-----------~V~vD~NHPLAGk~----L~F 132 (196)
T 2kfw_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG---PVPVEITAVEDD-----------HVVVDGNHMLAGQN----LKF 132 (196)
T ss_dssp CEEECGGGCCCS---SCCCTTCEEEE--EETTE---EEEEEBCCCCSS-----------SEEECCCCTTSCCC----CEE
T ss_pred EEEEEHHHCCCc---cCcccCCEEEE--ECCCC---cEEEEEEEEcCC-----------EEEEeCCCCCCCCe----EEE
Confidence 578888876321 36999999974 55552 578999999751 24455555555432 234
Q ss_pred cceeCCC
Q 004237 355 EIEPLTT 361 (766)
Q Consensus 355 EIEpv~~ 361 (766)
+||.+.-
T Consensus 133 ~vev~~v 139 (196)
T 2kfw_A 133 NVEVVAI 139 (196)
T ss_dssp EEEECCC
T ss_pred EEEEEEe
Confidence 6666653
No 15
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=57.55 E-value=28 Score=33.27 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=61.9
Q ss_pred CCCCCEEEE-EEc-cCCcEEEEEEecCCCCCCCCCccccCCccchhHHHHHHHHHhcCCcEEEEEccCCC------CCcc
Q 004237 205 LVAGDSVLF-IWN-EKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRAS------PSEF 276 (766)
Q Consensus 205 L~aGDsVvF-~R~-~~g~L~vGIRRa~r~~~~~pssv~s~~sm~~gvla~Aa~aaa~~~~F~V~Y~PRas------~sEF 276 (766)
.+.||.|.+ |+. .+|+.+-.-+ . . -.+....+-- -+.+|......|..++|.--|... ..-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~-~-------~-f~~G~g~vip-G~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE-L-------S-YLHGHRNLIP-GLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE-E-------E-EETTSSSSCH-HHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE-E-------E-EEECCCCcCh-HHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 567888876 332 5777665433 0 0 0111222222 256677777788888888765432 2457
Q ss_pred eechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 004237 277 VIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (766)
Q Consensus 277 VVp~~kyvkA~~~~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd 321 (766)
.||+..|-+. ..|.+||+|.+ ++++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED---AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT---SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC---CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 8888877432 36999999985 45542 567899999975
No 16
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=55.73 E-value=49 Score=31.07 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=65.8
Q ss_pred ccCCCCCCEEEE-EEc--c-CCcEEEEEEecCCCCCCCCCccc-cCCccchhHHHHHHHHHhcCCcEEEEEccCC-----
Q 004237 202 AKRLVAGDSVLF-IWN--E-KNQLLLGIRRAIRPPTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRA----- 271 (766)
Q Consensus 202 ~K~L~aGDsVvF-~R~--~-~g~L~vGIRRa~r~~~~~pssv~-s~~sm~~gvla~Aa~aaa~~~~F~V~Y~PRa----- 271 (766)
.+..+.||.|.+ |+. . +|+.+-.-+. ..|.... ....+-- -+.+|......|..++|.--|..
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vip-g~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIA-GLEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCH-HHHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccH-HHHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 455778999877 442 4 7776654321 1233322 2222222 35667777778888888765532
Q ss_pred -CCCcceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 004237 272 -SPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (766)
Q Consensus 272 -s~sEFVVp~~kyvkA~~~~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd 321 (766)
...-+.||+..| . ...+.+||+|.+ ++++. ....|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~---~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E---GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T---TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C---CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 234578888887 2 247999999985 45553 467899999975
No 17
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=49.53 E-value=37 Score=32.91 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=66.3
Q ss_pred CCCCCCEEEE-EEc--cCCcEEEEEEecCCCCCCCCCccc-cCCccchhHHHHHHHHHhcCCcEEEEEccCCCCCc----
Q 004237 204 RLVAGDSVLF-IWN--EKNQLLLGIRRAIRPPTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSE---- 275 (766)
Q Consensus 204 ~L~aGDsVvF-~R~--~~g~L~vGIRRa~r~~~~~pssv~-s~~sm~~gvla~Aa~aaa~~~~F~V~Y~PRas~sE---- 275 (766)
..+.||.|.+ |+. .+|+++-.-+.. ..|.... ....+ +--+.+|......|..++|..-|...-.+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~v-ipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASL-SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSS-CHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5778999988 443 578866543221 1233222 22222 22356777778888899998766543332
Q ss_pred --ceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 004237 276 --FVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (766)
Q Consensus 276 --FVVp~~kyvkA~~~~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd 321 (766)
+.||++.|-.. ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA---GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT---CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc---CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 67888876432 35899999876 55542 467899999985
No 18
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=44.73 E-value=25 Score=30.82 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=46.3
Q ss_pred ceEEEecccccccccccCCCCChHHHHHHHHhhhcCCCcccCCCCCccEEEEEe-CCCCeEeecCcCccc
Q 004237 692 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVD-RENDVLLLGDDPWEI 760 (766)
Q Consensus 692 ~fVKV~m~G~igRkiDL~~~~sY~eL~~~L~~MFg~eg~l~d~~~s~~~lvYeD-~EGD~mLvGDvPWe~ 760 (766)
.=|||+-. +---|....=-+|.+|+..|.+-+++.++ .=+|-|.| .+|.+++.+|.=++.
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~-------~~~LsYk~~~s~~~vi~~d~dl~~ 66 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLE-------HTKLSYRPRDSNELVPLSEDSMKD 66 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGG-------GCCEEECCTTCSSCEECCTTTHHH
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcc-------eeEEEeeCCCCCCeeccChHHHHH
Confidence 45777776 66777778888999999999999987532 24888988 577777888876654
No 19
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=38.42 E-value=40 Score=28.52 Aligned_cols=53 Identities=9% Similarity=0.221 Sum_probs=39.6
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCcccccceeCC
Q 004237 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 360 (766)
Q Consensus 290 ~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd~Dp~rWp~S~WR~L~V~WDe~~~~~~~~RVSPWEIEpv~ 360 (766)
..|++|+++-.++ + | .++|-++|++|... ....|..++.. .+.|..=+|.|+.
T Consensus 5 ~~~~vGd~vmArW-~-D--~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 5 SEFQINEQVLACW-S-D--CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp CCCCTTCEEEEEC-T-T--SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cccccCCEEEEEc-C-C--CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 5799999999999 3 3 38999999999852 45889999833 3556665665553
No 20
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=38.26 E-value=1.6e+02 Score=27.96 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=61.9
Q ss_pred CCCCCEEEE-EEcc-CCcEEEEEEec-----CCC---CCCCCCccc-cCCccchhHHHHHHHHHhcCCcEEEEEccCCCC
Q 004237 205 LVAGDSVLF-IWNE-KNQLLLGIRRA-----IRP---PTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRASP 273 (766)
Q Consensus 205 L~aGDsVvF-~R~~-~g~L~vGIRRa-----~r~---~~~~pssv~-s~~sm~~gvla~Aa~aaa~~~~F~V~Y~PRas~ 273 (766)
.+.||.|.+ |+.. +|+++-.-+.. ..+ ....|..+. ....+-. -+.+|......|..++|+--|-..-
T Consensus 2 i~~Gd~V~v~Y~g~ldG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~-G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLP-GLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEETTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCH-HHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEECCEEEEeccccccccccccccccCCCCEEEEECCCcHHH-HHHHHHcCCCCCCEEEEEECcHHhc
Confidence 357888877 3321 77766543321 000 001243322 2222322 3577888888999999986554322
Q ss_pred ------CcceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEecc
Q 004237 274 ------SEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (766)
Q Consensus 274 ------sEFVVp~~kyvkA~~~~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd 321 (766)
.=..||++.|-+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 81 G~~~~~~V~~v~~~~f~~~--~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 81 GKRDPSKIKLIPLSEFTKR--GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp CCCCGGGEEEEEHHHHHHT--TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred CCCChHhEEEcCHHHCCcc--cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 2367898887653 235788999975 332 589999975
No 21
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=38.13 E-value=42 Score=30.85 Aligned_cols=40 Identities=28% Similarity=0.280 Sum_probs=32.9
Q ss_pred ccCCCCChHHHHHHHHhhhcCCCcccCCCCCccEEEEEeCCCCeEeecC
Q 004237 707 DISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGD 755 (766)
Q Consensus 707 DL~~~~sY~eL~~~L~~MFg~eg~l~d~~~s~~~lvYeD~EGD~mLvGD 755 (766)
||+.--.|.+|..-..+-|.-+ +-.|-|.|.|||+.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~---------DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE---------DIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS---------SEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhccc---------ceeeeeecCCCCEEEEcc
Confidence 5666779999999999999832 469999999999986544
No 22
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=33.05 E-value=37 Score=26.50 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=22.2
Q ss_pred CCccccEEEEeeeccccccceeeEEEEEecc
Q 004237 291 RVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (766)
Q Consensus 291 ~ws~GmRFrM~fEtEDss~rr~~GTI~gisd 321 (766)
.|.+|+.+-..|..|. .||-++|.+|..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4899999999995443 799999999964
No 23
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.02 E-value=41 Score=28.68 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCC
Q 004237 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDES 342 (766)
Q Consensus 290 ~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd~Dp~rWp~S~WR~L~V~WDe~ 342 (766)
..|.+|+++.-.|. |. .||-+||++|.+ + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DC---RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-SS---SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-CC---CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999996 33 799999999964 1 3467888765
No 24
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=32.59 E-value=40 Score=27.45 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=30.6
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCC
Q 004237 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDEST 343 (766)
Q Consensus 290 ~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd~Dp~rWp~S~WR~L~V~WDe~~ 343 (766)
..|.+|+.+.-.|..+. .||.++|.+|.... ....|...+=.
T Consensus 7 ~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~---------~~~~V~fvdYG 48 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN---------GTAAITFAGYG 48 (64)
T ss_dssp SCCCTTCEEEEECTTTS---SEEEEEEEEEETTT---------TEEEEEETTTT
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC---------CEEEEEEEecC
Confidence 47999999999995333 79999999998421 23566666543
No 25
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=32.40 E-value=44 Score=26.70 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCccccEEEEeeeccccccceeeEEEEEecc
Q 004237 291 RVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (766)
Q Consensus 291 ~ws~GmRFrM~fEtEDss~rr~~GTI~gisd 321 (766)
.|.+|+.+-..|..+. .||-++|+++..
T Consensus 3 ~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 6999999999995333 799999999964
No 26
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=31.85 E-value=53 Score=29.07 Aligned_cols=54 Identities=9% Similarity=0.218 Sum_probs=39.7
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCcccccceeCCC
Q 004237 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTT 361 (766)
Q Consensus 290 ~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd~Dp~rWp~S~WR~L~V~WDe~~~~~~~~RVSPWEIEpv~~ 361 (766)
..|++|+++-..+ ++ .++|-++|++|... ....|.+++.. .+.|.+=+|.|+..
T Consensus 20 ~~f~vGd~VlArW-~D---~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 20 SEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp -CCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred cccccCCEEEEEe-CC---CCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 4799999999999 33 38999999999852 35899999843 35566666666543
No 27
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.82 E-value=31 Score=33.53 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=22.0
Q ss_pred ccCCCCCCEEEEEEccCCcEEEEEE
Q 004237 202 AKRLVAGDSVLFIWNEKNQLLLGIR 226 (766)
Q Consensus 202 ~K~L~aGDsVvF~R~~~g~L~vGIR 226 (766)
-..|.+||.|-|+++++|+|++.|-
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEES
T ss_pred ccccCCCCEEEEEEcCCcEEEEEEC
Confidence 4567899999999999999999874
No 28
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=30.75 E-value=46 Score=30.56 Aligned_cols=73 Identities=30% Similarity=0.319 Sum_probs=43.7
Q ss_pred CcceechhHHHHhhhcCCCccccEEEEeeeccccccceeeEEEEEeccCCCCCCCCCCccceeeccCCCCCCCCCCCccc
Q 004237 274 SEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSL 353 (766)
Q Consensus 274 sEFVVp~~kyvkA~~~~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd~Dp~rWp~S~WR~L~V~WDe~~~~~~~~RVSP 353 (766)
++|-=. +.|..-+. .++.+|||+||.=.-|+-+. -=.|++. ++. + . -+ .+||.|..... .-.|+-
T Consensus 6 sdF~s~-~~Ya~YVr-~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~--G---l~--~vQv~W~~~G~---TyWV~~ 70 (105)
T 2jng_A 6 SEFASG-NTYALYVR-DTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N--G---VP--PVQVFWESTGR---TYWVHW 70 (105)
T ss_dssp GGSSSS-HHHHHHHH-HHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T--T---SS--EEEEEETTTTE---EEEEEG
T ss_pred hhcccc-hhHHHHHH-hcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C--C---Cc--cceeeehhcCc---eEEEEe
Confidence 455332 44555554 46899999999643343222 2378887 442 2 1 22 89999996652 345666
Q ss_pred ccceeCCC
Q 004237 354 WEIEPLTT 361 (766)
Q Consensus 354 WEIEpv~~ 361 (766)
=.||.+..
T Consensus 71 ~~~Ellg~ 78 (105)
T 2jng_A 71 HMLEILGF 78 (105)
T ss_dssp GGEEECCC
T ss_pred ehhhhcCC
Confidence 67777754
No 29
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=24.66 E-value=1.2e+02 Score=26.91 Aligned_cols=46 Identities=17% Similarity=0.037 Sum_probs=34.4
Q ss_pred ceEEEEEecCCCeEEEEEEEeCCCcceeecccccccccccCCCCCCEEEEEEc----cCCcEEEEEEecC
Q 004237 164 AQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN----EKNQLLLGIRRAI 229 (766)
Q Consensus 164 ~q~L~~~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K~L~aGDsVvF~R~----~~g~L~vGIRRa~ 229 (766)
-..+.+.|..| +.+++.|+.. |.+||.|.+... -+|++.|-+-|..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 34799999999 5788888543 889999998743 2788877776653
No 30
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=24.63 E-value=62 Score=28.40 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.2
Q ss_pred CCCccccEEEEeeeccccccceeeEEEEEecc
Q 004237 290 TRVSVGMRFRMLFETEESSVRRYMGTITGISD 321 (766)
Q Consensus 290 ~~ws~GmRFrM~fEtEDss~rr~~GTI~gisd 321 (766)
..|.+|+.+.-.|..+. .||-++|.+|..
T Consensus 9 ~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~ 37 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDG---CIYPATIASIDF 37 (88)
T ss_dssp CCCCSSCEEEEECTTTC---CEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEecC
Confidence 47999999999994333 799999999974
No 31
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=23.36 E-value=64 Score=31.29 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=19.2
Q ss_pred CCCCEEEEEEccCCcEEEEEE
Q 004237 206 VAGDSVLFIWNEKNQLLLGIR 226 (766)
Q Consensus 206 ~aGDsVvF~R~~~g~L~vGIR 226 (766)
..||.+.|+++++|+|++.|-
T Consensus 107 ~~g~~l~f~v~~~G~l~~~iN 127 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGIN 127 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEES
T ss_pred cCCCEEEEEEcCCCEEEEEEC
Confidence 679999999999999999884
No 32
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=22.14 E-value=68 Score=30.42 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=33.1
Q ss_pred ceEEEEEecCCCeEEEEEEE---------eCCCcceee--cccccccccccCCCCCCEEEE
Q 004237 164 AQELIARDLHDVEWKFRHIF---------RGQPKRHLL--TTGWSVFVSAKRLVAGDSVLF 213 (766)
Q Consensus 164 ~q~L~~~D~~G~~W~FR~iy---------rg~prrhlL--TtGWs~FV~~K~L~aGDsVvF 213 (766)
..++.+.|.+|++=....-- ...+=+|+| ..||.. +.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~~---~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLAA---RLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHHH---HHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChHH---HcCCCCCCEEeC
Confidence 46788888888766664311 112346998 678765 899999999975
No 33
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=22.06 E-value=29 Score=27.65 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=11.7
Q ss_pred EEEEEeCCCCeEee
Q 004237 740 QLVFVDRENDVLLL 753 (766)
Q Consensus 740 ~lvYeD~EGD~mLv 753 (766)
.++|+|.+|||-.-
T Consensus 20 ~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 20 KVEYTDASGQWGVQ 33 (46)
T ss_dssp CEEEEETTEEEEEE
T ss_pred eEEEEcCCCccccC
Confidence 59999999999543
No 34
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=21.12 E-value=44 Score=29.42 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=15.1
Q ss_pred ccccCCCCCCEEEEEEcc
Q 004237 200 VSAKRLVAGDSVLFIWNE 217 (766)
Q Consensus 200 V~~K~L~aGDsVvF~R~~ 217 (766)
...|+..+||+|+|--..
T Consensus 19 a~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTCCBCTTCEEEEECCT
T ss_pred ccCceEcCCCEEEEEecC
Confidence 558999999999997654
No 35
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=20.15 E-value=68 Score=27.37 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=31.5
Q ss_pred cceeecccccccccccCCCCCCEEEEEEc-cCCcEEEEEEecC
Q 004237 188 KRHLLTTGWSVFVSAKRLVAGDSVLFIWN-EKNQLLLGIRRAI 229 (766)
Q Consensus 188 rrhlLTtGWs~FV~~K~L~aGDsVvF~R~-~~g~L~vGIRRa~ 229 (766)
..|.|+== .+++++-+++.||.+...=+ .+|++.++.+|-+
T Consensus 23 etyYInIP-aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVK 64 (68)
T 3o27_A 23 TTFYLLIP-KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVK 64 (68)
T ss_dssp CCEEEEEC-HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECG
T ss_pred eEEEEeCc-HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhh
Confidence 34555321 48999999999999998765 5888999999854
Done!