BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004238
(766 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
pdb|3EGD|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 764
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/769 (46%), Positives = 494/769 (64%), Gaps = 29/769 (3%)
Query: 10 EGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCK--TCTAALN 67
E DGVR +WNVWP +++EA++ V+P+AA +P++ PD+P + Y P+ C TC A LN
Sbjct: 12 EERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLN 71
Query: 68 AFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNP 127
+VD+ AK+W C FCYQRN FPP YA ISE N P EL PQ++++EY +
Sbjct: 72 PLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRG------- 124
Query: 128 NPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFS 187
P++ +F++V+DTCM +E+L + ++ ++ LLP A+VGL+TFG VHELG
Sbjct: 125 ---PQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCE 181
Query: 188 DMSKVYVFRGNKEISKDQVLEQXXXXXXXXXXXXXYQKAAVPNAFPNSGVSRFLLPASEC 247
+SK YVFRG K++S Q+ E + P P S +RFL P +
Sbjct: 182 GISKSYVFRGTKDLSAKQLQEMLGLSKVPLTQATRGPQVQQP---PPS--NRFLQPVQKI 236
Query: 248 EYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTE 307
+ L LL ELQ D WPV RP R +GVALS+A GLL P TGARI+ +GGP T+
Sbjct: 237 DMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQ 296
Query: 308 GPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVG 367
GPG +V +L P+RS D+DKD A + KK K ++ LA + + GHV+D++A ALDQ G
Sbjct: 297 GPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTG 356
Query: 368 VAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIF-EDGEQSLGLCFNGALEIICSKDIKI 426
+ EMK TGG +V+ +SF S+FK +F+R+F +D + F G LEI S++IKI
Sbjct: 357 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKI 416
Query: 427 QGIIGPCTSL--------EKVRLRGEYYAWKMCGLDKSTCLTVFFDLSSSERLNTPGTIN 478
G IGPC SL E G WK+CGL +T L ++F++ + N P
Sbjct: 417 SGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQH--NAPIPQG 474
Query: 479 PQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSLKM 538
+ +QF+T +Q G+ +RVTT+ R W D+ + + FDQE+AA++MARL +
Sbjct: 475 GRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRA 534
Query: 539 EMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFNLRRSQFVQVFN 598
E EEG D RWLDR LIRLC KFG+Y KDDP+SF + +FSL+PQFMF+LRRS F+QVFN
Sbjct: 535 ETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFN 594
Query: 599 NSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVASIAADRILLLDTYF 658
NSPDE++Y+R R+++T + +MIQP L +YSF+ P+P LLD +SI ADRILL+DT+F
Sbjct: 595 NSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFF 654
Query: 659 SVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELIIRDRFPVPRLVVCDQHGSQ 718
++I+HG TIAQWR GYQ+ PE++ F LL+AP DDA+ I+ RFP+PR + + GSQ
Sbjct: 655 QILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQ 714
Query: 719 ARFLLAKLNPSATYNNANEIAAGSDI-IFTDDVSLQVFIEHLQRLAVQS 766
ARFLL+K+NPS T+NN S I TDDVSLQVF++HL++LAV S
Sbjct: 715 ARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSS 763
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 769
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/769 (46%), Positives = 494/769 (64%), Gaps = 29/769 (3%)
Query: 10 EGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCK--TCTAALN 67
E DGVR +WNVWP +++EA++ V+P+AA +P++ PD+P + Y P+ C TC A LN
Sbjct: 16 EERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLN 75
Query: 68 AFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNP 127
+VD+ AK+W C FCYQRN FPP YA ISE N P EL PQ++++EY +
Sbjct: 76 PLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRG------- 128
Query: 128 NPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFS 187
P++ +F++V+DTCM +E+L + ++ ++ LLP A+VGL+TFG VHELG
Sbjct: 129 ---PQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCE 185
Query: 188 DMSKVYVFRGNKEISKDQVLEQXXXXXXXXXXXXXYQKAAVPNAFPNSGVSRFLLPASEC 247
+SK YVFRG K++S Q+ E + P P S +RFL P +
Sbjct: 186 GISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQP---PPS--NRFLQPVQKI 240
Query: 248 EYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTE 307
+ L LL ELQ D WPV RP R +GVALS+A GLL P TGARI+ +GGP T+
Sbjct: 241 DMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQ 300
Query: 308 GPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVG 367
GPG +V +L P+RS D+DKD A + KK K ++ LA + + GHV+D++A ALDQ G
Sbjct: 301 GPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTG 360
Query: 368 VAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIF-EDGEQSLGLCFNGALEIICSKDIKI 426
+ EMK TGG +V+ +SF S+FK +F+R+F +D + F G LEI S++IKI
Sbjct: 361 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKI 420
Query: 427 QGIIGPCTSL--------EKVRLRGEYYAWKMCGLDKSTCLTVFFDLSSSERLNTPGTIN 478
G IGPC SL E G WK+CGL +T L ++F++ + N P
Sbjct: 421 SGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQH--NAPIPQG 478
Query: 479 PQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSLKM 538
+ +QF+T +Q G+ +RVTT+ R W D+ + + FDQE+AA++MARL +
Sbjct: 479 GRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRA 538
Query: 539 EMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFNLRRSQFVQVFN 598
E EEG D RWLDR LIRLC KFG+Y KDDP+SF + +FSL+PQFMF+LRRS F+QVFN
Sbjct: 539 ETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFN 598
Query: 599 NSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVASIAADRILLLDTYF 658
NSPDE++Y+R R+++T + +MIQP L +YSF+ P+P LLD +SI ADRILL+DT+F
Sbjct: 599 NSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFF 658
Query: 659 SVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELIIRDRFPVPRLVVCDQHGSQ 718
++I+HG TIAQWR GYQ+ PE++ F LL+AP DDA+ I+ RFP+PR + + GSQ
Sbjct: 659 QILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQ 718
Query: 719 ARFLLAKLNPSATYNNANEIAAGSDI-IFTDDVSLQVFIEHLQRLAVQS 766
ARFLL+K+NPS T+NN S I TDDVSLQVF++HL++LAV S
Sbjct: 719 ARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSS 767
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
Length = 765
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/769 (46%), Positives = 493/769 (64%), Gaps = 29/769 (3%)
Query: 10 EGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCK--TCTAALN 67
E DGVR +WNVWP +++EA++ V+P+AA +P++ PD+P + Y P+ C TC A LN
Sbjct: 12 EERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLN 71
Query: 68 AFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNP 127
+VD+ AK+W C FCYQRN FPP YA ISE N P EL PQ++++EY +
Sbjct: 72 PLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRG------- 124
Query: 128 NPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFS 187
P++ +F++V+DTCM +E+L + ++ ++ LLP A+VGL+TFG VHELG
Sbjct: 125 ---PQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCE 181
Query: 188 DMSKVYVFRGNKEISKDQVLEQXXXXXXXXXXXXXYQKAAVPNAFPNSGVSRFLLPASEC 247
+SK YVFRG ++S Q+ E + P P S +RFL P +
Sbjct: 182 GISKSYVFRGTGDLSAKQLQEMLGLSKVPLTQATRGPQVQQP---PPS--NRFLQPVQKI 236
Query: 248 EYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTE 307
+ L LL ELQ D WPV RP R +GVALS+A GLL P TGARI+ +GGP T+
Sbjct: 237 DMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQ 296
Query: 308 GPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVG 367
GPG +V +L P+RS D+DKD A + KK K ++ LA + + GHV+D++A ALDQ G
Sbjct: 297 GPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTG 356
Query: 368 VAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIF-EDGEQSLGLCFNGALEIICSKDIKI 426
+ EMK TGG +V+ +SF S+FK +F+R+F +D + F G LEI S++IKI
Sbjct: 357 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKI 416
Query: 427 QGIIGPCTSL--------EKVRLRGEYYAWKMCGLDKSTCLTVFFDLSSSERLNTPGTIN 478
G IGPC SL E G WK+CGL +T L ++F++ + N P
Sbjct: 417 SGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQH--NAPIPQG 474
Query: 479 PQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSLKM 538
+ +QF+T +Q G+ +RVTT+ R W D+ + + FDQE+AA++MARL +
Sbjct: 475 GRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRA 534
Query: 539 EMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFNLRRSQFVQVFN 598
E EEG D RWLDR LIRLC KFG+Y KDDP+SF + +FSL+PQFMF+LRRS F+QVFN
Sbjct: 535 ETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFN 594
Query: 599 NSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVASIAADRILLLDTYF 658
NSPDE++Y+R R+++T + +MIQP L +YSF+ P+P LLD +SI ADRILL+DT+F
Sbjct: 595 NSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFF 654
Query: 659 SVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELIIRDRFPVPRLVVCDQHGSQ 718
++I+HG TIAQWR GYQ+ PE++ F LL+AP DDA+ I+ RFP+PR + + GSQ
Sbjct: 655 QILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQ 714
Query: 719 ARFLLAKLNPSATYNNANEIAAGSDI-IFTDDVSLQVFIEHLQRLAVQS 766
ARFLL+K+NPS T+NN S I TDDVSLQVF++HL++LAV S
Sbjct: 715 ARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSS 763
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 625 bits (1612), Expect = e-179, Method: Compositional matrix adjust.
Identities = 318/774 (41%), Positives = 462/774 (59%), Gaps = 35/774 (4%)
Query: 10 EGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT--CTAALN 67
E I+GVR TWNV+P T+ +A+ V+P+ +P++ + ++ PY P+ C C + LN
Sbjct: 11 EDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILN 70
Query: 68 AFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNP 127
+ +D W CP C RNH PP Y +S+ N+P EL Q TT+EY N P
Sbjct: 71 PYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYIT-------NKP 121
Query: 128 NPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFS 187
P P+F FV+D E L + + ++ LLP NA++GL+T+G +H+L
Sbjct: 122 VTVP---PIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSE 178
Query: 188 DMSKVYVFRGNKEISKDQVLEQXXXXXXXXXXXXXYQKAAVPNAFPNSGVSRFLLPASEC 247
+ + VFRG++E + + E N ++RF LP +
Sbjct: 179 TIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQV 238
Query: 248 EYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTE 307
E+ LN LL+ L PDQW V RP R TG AL++A+ LL C ARI+ GP T
Sbjct: 239 EFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTV 298
Query: 308 GPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVG 367
PG IV+ +L +P+RSH D+D D A +KKA KFY+ +A+++ + GH +D+FA DQ+G
Sbjct: 299 APGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIG 358
Query: 368 VAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIF-EDGEQSLGLCFNGALEIICSKDIKI 426
++EMK + TGG+++L ++F ++FK S+ R+F +D E L + FNG + + SKD+K+
Sbjct: 359 MSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKV 418
Query: 427 QGIIGPCTSLEKVRLR---------GEYYAWKMCGLDKSTCLTVFFDLS-----SSERLN 472
QG+IG ++++K G WKM L +FF+++ S+ ++
Sbjct: 419 QGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSNPMMS 478
Query: 473 TPGTIN-PQL-YLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVM 530
PG+ + P L Y QF+T++Q G + +RVTTV Q + + + FDQE+AAV+M
Sbjct: 479 APGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLL--PFGTPAIAASFDQEAAAVLM 536
Query: 531 ARLTSLKMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFNLRR 590
AR+ K E ++G D RWLDR+LI+LC K+ DY KDDP SF L P+FSL+PQF + LRR
Sbjct: 537 ARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRR 596
Query: 591 SQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVASIAADR 650
SQF+ VFNNSPDETA++R + RE+ TN+ +MIQP+L S+S PQP LLD S+ +
Sbjct: 597 SQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNT 656
Query: 651 ILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELIIRDRFPVPRLV 710
ILLLDT+F ++I+HG IAQWR GYQ+ P++ F LL P +A ++ DRFP+PR +
Sbjct: 657 ILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVDRFPLPRFI 716
Query: 711 VCDQHGSQARFLLAKLNPSATYNNANEIAAGSDIIFTDDVSLQVFIEHLQRLAV 764
+ GSQARFLL+KLNPS Y + GS I+ TDDVSLQ F+ HLQ++AV
Sbjct: 717 DTEAGGSQARFLLSKLNPSDNYQDMAR--GGSTIVLTDDVSLQNFMTHLQQVAV 768
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 624 bits (1609), Expect = e-179, Method: Compositional matrix adjust.
Identities = 318/774 (41%), Positives = 462/774 (59%), Gaps = 35/774 (4%)
Query: 10 EGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT--CTAALN 67
E I+GVR TWNV+P T+ +A+ V+P+ +P++ + ++ PY P+ C C + LN
Sbjct: 7 EDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILN 66
Query: 68 AFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNP 127
+ +D W CP C RNH PP Y +S+ N+P EL Q TT+EY N P
Sbjct: 67 PYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYIT-------NKP 117
Query: 128 NPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFS 187
P P+F FV+D E L + + ++ LLP NA++GL+T+G +H+L
Sbjct: 118 VTVP---PIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSE 174
Query: 188 DMSKVYVFRGNKEISKDQVLEQXXXXXXXXXXXXXYQKAAVPNAFPNSGVSRFLLPASEC 247
+ + VFRG++E + + E N ++RF LP +
Sbjct: 175 TIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQV 234
Query: 248 EYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTE 307
E+ LN LL+ L PDQW V RP R TG AL++A+ LL C ARI+ GP T
Sbjct: 235 EFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTV 294
Query: 308 GPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVG 367
PG IV+ +L +P+RSH D+D D A +KKA KFY+ +A+++ + GH +D+FA DQ+G
Sbjct: 295 APGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIG 354
Query: 368 VAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIF-EDGEQSLGLCFNGALEIICSKDIKI 426
++EMK + TGG+++L ++F ++FK S+ R+F +D E L + FNG + + SKD+K+
Sbjct: 355 MSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKV 414
Query: 427 QGIIGPCTSLEKVRLR---------GEYYAWKMCGLDKSTCLTVFFDLS-----SSERLN 472
QG+IG ++++K G WKM L +FF+++ S+ ++
Sbjct: 415 QGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSNPMMS 474
Query: 473 TPGTIN-PQL-YLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVM 530
PG+ + P L Y QF+T++Q G + +RVTTV Q + + + FDQE+AAV+M
Sbjct: 475 APGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLL--PFGTPAIAASFDQEAAAVLM 532
Query: 531 ARLTSLKMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFNLRR 590
AR+ K E ++G D RWLDR+LI+LC K+ DY KDDP SF L P+FSL+PQF + LRR
Sbjct: 533 ARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRR 592
Query: 591 SQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVASIAADR 650
SQF+ VFNNSPDETA++R + RE+ TN+ +MIQP+L S+S PQP LLD S+ +
Sbjct: 593 SQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNT 652
Query: 651 ILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELIIRDRFPVPRLV 710
ILLLDT+F ++I+HG IAQWR GYQ+ P++ F LL P +A ++ DRFP+PR +
Sbjct: 653 ILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVDRFPLPRFI 712
Query: 711 VCDQHGSQARFLLAKLNPSATYNNANEIAAGSDIIFTDDVSLQVFIEHLQRLAV 764
+ GSQARFLL+KLNPS Y + GS I+ TDDVSLQ F+ HLQ++AV
Sbjct: 713 DTEAGGSQARFLLSKLNPSDNYQDMAR--GGSTIVLTDDVSLQNFMTHLQQVAV 764
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 155/689 (22%), Positives = 264/689 (38%), Gaps = 96/689 (13%)
Query: 15 VRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPY-------APLRCKTCTAALN 67
+R T P T A + +PLAA I P+ P PY PLRC C A +
Sbjct: 46 IRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMC 105
Query: 68 AFARVDFTAKIWICPFCYQRNHFPPHY-AAISETNLPCELY--PQYTTVEYTLPHSMQN- 123
F + + + C FC N PP Y + T + Y P+ + Y ++
Sbjct: 106 PFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYC 165
Query: 124 PNNPNPDPRLSPVFVFVLDTCMIEEELGYAR---SELKRAIGLLPDNAMVGLVTFGTQAH 180
NN P P P F+F++D G R ELK + LP G +
Sbjct: 166 KNNKFPSP---PAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREG-------GAEES 215
Query: 181 VHELGFSDMSKVYVFRGNK-EISKDQVLEQXXXXXXXXXXXXXYQKAAVPNAFPNSGVSR 239
+GF +KV F K +++ Q++ VP +
Sbjct: 216 AIRVGFVTYNKVLHFYNVKSSLAQPQMM-----------VVSDVADMFVP------LLDG 258
Query: 240 FLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVA 299
FL+ +E + SLLD++ P+ + TR + V + A G +
Sbjct: 259 FLVNVNESRAVITSLLDQI-PEMF---ADTRETETVFVPVIQAGMEALKAAECAGKLFLF 314
Query: 300 LVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLF 359
P E PG + ++D + + + K+ F+ Y LAK+ V+QG +DLF
Sbjct: 315 HTSLPIAEAPGKLKNRDDRKLINTDKE-----KTLFQPQTGAYQTLAKECVAQGCCVDLF 369
Query: 360 ASALDQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSF-KRIFEDGEQSLGLCFNGALEI 418
V VA + V + TGG V SF ++ F + D ++ +G F+ + +
Sbjct: 370 LFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVG--FDAVMRV 427
Query: 419 ICSKDIKIQGIIGPCTSLEKVRLRGEYYA-----WKMCGLDKSTCLTVFFDLSSSERLNT 473
S T + V G +Y ++ GLD +TV F +RLN
Sbjct: 428 RTS------------TGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEF--KHDDRLNE 473
Query: 474 PGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARL 533
LQ + S G+ LR+ + ++ +L + + ++ MA+
Sbjct: 474 ESGA----LLQCALLYTSCAGQRRLRIHNLA---LNCCTQLADLYRNCETDTLINYMAKF 526
Query: 534 TSLKMEMEEGFDATRWLDRSLIRLCSK-FGDYRKD--DPAS---FTLNPSFSLFPQFMFN 587
+ + + A R +LI C++ YRK+ P+S L L P ++
Sbjct: 527 -AYRGVLNSPVKAVR---DTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYLNC 582
Query: 588 LRRSQFVQVFNN-SPDETAYFRMLLNRENITNAAVMIQPSLISYS---FNSLPQPALLDV 643
+ +S +Q + D+ AY R L+ ++T V P L+ + S +P +
Sbjct: 583 VLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRA 642
Query: 644 AS--IAADRILLLDTYFSVVIFHGMTIAQ 670
+ ++ I LL+ ++ ++ G ++ Q
Sbjct: 643 SEERLSNGDIYLLENGLNLFLWVGASVQQ 671
>pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a
Mutant V69a
Length = 59
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 31/43 (72%)
Query: 61 TCTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLP 103
TC AALN +VD+ AK+W C FCYQRN FPP YA ISE N P
Sbjct: 16 TCRAALNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP 58
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 146/700 (20%), Positives = 261/700 (37%), Gaps = 110/700 (15%)
Query: 16 RMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPL-RCKTCTAALNAFARVDF 74
R T P+T+ +K +PL + P + +P + + + RC++C +N F
Sbjct: 42 RCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYINPFVSF-L 100
Query: 75 TAKIWICPFCYQRNHFPPHYAAISETNLPCELYP----QYTTVEYTLPHS-MQNPNNPNP 129
+ W C CY+ N P + T + E + Q T+E+ P M P P
Sbjct: 101 DQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYMLRPPQP-- 158
Query: 130 DPRLSPVFVFVLDTCMIEEELGYARS---ELKRAIGLLPDN--AMVGLVTFGTQAHVHEL 184
PV++FV D E GY S L + LLP N +G +TF + H + L
Sbjct: 159 -----PVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGL 213
Query: 185 GFSDMSKVYVFRGNKEISKDQVLEQXXXXXXXXXXXXXYQKAAVPNAFPNSGVSRFLLPA 244
+ +S+ Q+L + +P P + L+
Sbjct: 214 -------------QESLSQPQML-----------IVSDIEDVFIP--MPEN----LLVNL 243
Query: 245 SECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGP 304
+E + + LL L P + T+ + G AL A L+ TG R+
Sbjct: 244 NESKELVQDLLKTL-PQMFTKTLETQSA--LGPALQAAFKLMSP----TGGRMSVFQTQL 296
Query: 305 CTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALD 364
T G G + ++ EP +H+ KD + FY LA Q +DLF +
Sbjct: 297 PTLGVGALKPRE--EP--NHRSSAKDI--HMTPSTDFYKKLALDCSGQQVAVDLFLLSGQ 350
Query: 365 QVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIFEDGEQSL--GLCFNGALEIICSK 422
+A + + G V S+ H +++ ++ ++ L + F + I C+K
Sbjct: 351 YSDLASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTK 410
Query: 423 DIKIQGIIGPCTSLEKVRLRGEYYAWKMCGLDKSTCLTVFFDLSSSERLNTPGTINPQLY 482
+ I G ++ +ST L +++ ++ L
Sbjct: 411 GLSIHT------------FHGNFFV-------RSTDLLSLPNVNPDAGYAVQMSVEESLT 451
Query: 483 LQFLTSFQSP------EGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSL 536
L SFQS +G +RV T+ V + ++ G D ++ + ++A +
Sbjct: 452 DTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTL---NDVFLGADVQAISGLLANMAVD 508
Query: 537 KMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNP-SFSLFPQFMFNLRRSQFVQ 595
+ DA L ++I S + + + P S LFP F+ L + + Q
Sbjct: 509 RSMTASLSDARDALVNAVIDSLSAYRSSVLSNQQPGLMVPFSLRLFPLFVLALLKQKSFQ 568
Query: 596 VFNNSP-DETAYFRMLLNRENITNAAVMIQPSL-----------ISYSFNSLPQPALLD- 642
N+ DE + + + + + PSL ++ S ++PQP +L
Sbjct: 569 TGTNARLDERIFAMCQVKNQPLVYLMLTTHPSLYRVDNLSDEGALNISDRTIPQPPILQL 628
Query: 643 -VASIAADRILLLDTYFSVVIFHGMTIAQ---WRNMGYQN 678
V ++ D L+D ++++ G Q + +G QN
Sbjct: 629 SVEKLSRDGAFLMDAGSVLMLWVGKNCTQNFLSQVLGVQN 668
>pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a
Length = 59
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 30/43 (69%)
Query: 61 TCTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLP 103
TC A LN +VD+ AK+W C FCYQRN FPP YA ISE N P
Sbjct: 16 TCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP 58
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 146/700 (20%), Positives = 261/700 (37%), Gaps = 110/700 (15%)
Query: 16 RMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPL-RCKTCTAALNAFARVDF 74
R T P+T+ +K +PL + P + +P + + + RC++C +N F
Sbjct: 47 RCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYINPFVSF-L 105
Query: 75 TAKIWICPFCYQRNHFPPHYAAISETNLPCELYP----QYTTVEYTLPHS-MQNPNNPNP 129
+ W C CY+ N P + T + E + Q T+E+ P M P P
Sbjct: 106 DQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYMLRPPQP-- 163
Query: 130 DPRLSPVFVFVLDTCMIEEELGYARS---ELKRAIGLLPDN--AMVGLVTFGTQAHVHEL 184
PV++FV D E GY S L + LLP N +G +TF + H + L
Sbjct: 164 -----PVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGL 218
Query: 185 GFSDMSKVYVFRGNKEISKDQVLEQXXXXXXXXXXXXXYQKAAVPNAFPNSGVSRFLLPA 244
+ +S+ Q+L + +P P + L+
Sbjct: 219 -------------QESLSQPQML-----------IVSDIEDVFIP--MPEN----LLVNL 248
Query: 245 SECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGP 304
+E + + LL L P + T+ + G AL A L+ TG R+
Sbjct: 249 NESKELVQDLLKTL-PQMFTKTLETQSA--LGPALQAAFKLMSP----TGGRMSVFQTQL 301
Query: 305 CTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALD 364
T G G + ++ EP +H+ KD + FY LA Q +DLF +
Sbjct: 302 PTLGVGALKPRE--EP--NHRSSAKDI--HMTPSTDFYKKLALDCSGQQVAVDLFLLSGQ 355
Query: 365 QVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIFEDGEQSL--GLCFNGALEIICSK 422
+A + + G V S+ H +++ ++ ++ L + F + I C+K
Sbjct: 356 YSDLASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTK 415
Query: 423 DIKIQGIIGPCTSLEKVRLRGEYYAWKMCGLDKSTCLTVFFDLSSSERLNTPGTINPQLY 482
+ I G ++ +ST L +++ ++ L
Sbjct: 416 GLSIHT------------FHGNFFV-------RSTDLLSLPNVNPDAGYAVQMSVEESLT 456
Query: 483 LQFLTSFQSP------EGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSL 536
L SFQS +G +RV T+ V + ++ G D ++ + ++A +
Sbjct: 457 DTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTL---NDVFLGADVQAISGLLANMAVD 513
Query: 537 KMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNP-SFSLFPQFMFNLRRSQFVQ 595
+ DA L ++I S + + + P S LFP F+ L + + Q
Sbjct: 514 RSMTASLSDARDALVNAVIDSLSAYRSSVLSNQQPGLMVPFSLRLFPLFVLALLKQKSFQ 573
Query: 596 VFNNSP-DETAYFRMLLNRENITNAAVMIQPSL-----------ISYSFNSLPQPALLD- 642
N+ DE + + + + + PSL ++ S ++PQP +L
Sbjct: 574 TGTNARLDERIFAMCQVKNQPLVYLMLTTHPSLYRVDNLSDEGALNISDRTIPQPPILQL 633
Query: 643 -VASIAADRILLLDTYFSVVIFHGMTIAQ---WRNMGYQN 678
V ++ D L+D ++++ G Q + +G QN
Sbjct: 634 SVEKLSRDGAFLMDAGSVLMLWVGKNCTQNFLSQVLGVQN 673
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 133/637 (20%), Positives = 236/637 (37%), Gaps = 95/637 (14%)
Query: 13 DGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPL-RCKTCTAALNAFAR 71
D R T P+T+ +K +PL + P R +P + + RC++C +N F
Sbjct: 41 DSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRSCRTYINPFVS 100
Query: 72 VDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYP----QYTTVEYTLPHS-MQNPNN 126
+ W C CY+ N P + T E + Q +TVE+ M P
Sbjct: 101 F-IDQRRWKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLRPPQ 159
Query: 127 PNPDPRLSPVFVFVLDTCMIEEELGYAR---SELKRAIGLLPDNA--MVGLVTFGTQAHV 181
P V++FVLD E GY L + LP ++ +G +TF + H
Sbjct: 160 P-------AVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHF 212
Query: 182 HELGFSDMSKVYVFRGNKEISKDQVLEQXXXXXXXXXXXXXYQKAAVPNAFPNSGVSRFL 241
+ L + +S+ Q+L +P P+S L
Sbjct: 213 YNL-------------QEGLSQPQML-----------IVSDIDDVFLPT--PDS----LL 242
Query: 242 LPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALV 301
+ E + + LL+ L P+ + T + G AL A L+ TG R+
Sbjct: 243 VNLYESKELIKDLLNAL-PNMFTNTRETHSA--LGPALQAAFKLMSP----TGGRVSVFQ 295
Query: 302 GGPCTEGPGTIVSKDLSEP-VRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFA 360
+ G G + S++ +P RS + + P A FY LA Q +DLF
Sbjct: 296 TQLPSLGAGLLQSRE--DPNQRSSTKVVQHLGP----ATDFYKKLALDCSGQQTAVDLFL 349
Query: 361 SALDQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIFEDGEQSL--GLCFNGALEI 418
+ +A + + + G + SF ++ +++ +D ++ L + F + I
Sbjct: 350 LSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRI 409
Query: 419 ICSKDIKIQGIIGPCTSLEKVRLRGEYYAWKMCGLDKSTCLTVFFDLSSSERLNTPGTIN 478
C+K + + G ++ +ST L +++ +I
Sbjct: 410 RCTKGLSMHT------------FHGNFFV-------RSTDLLSLANINPDAGFAVQLSIE 450
Query: 479 PQLYLQFLTSFQ------SPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMAR 532
L L FQ S +G +RV T+ V S ++ G D ++A ++A
Sbjct: 451 ESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLA---DVYAGVDVQAAICLLAN 507
Query: 533 LTSLKMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNP-SFSLFPQFMFN-LRR 590
+ + DA L +++ S +G + S + P S LFP ++ L++
Sbjct: 508 MAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQ 567
Query: 591 SQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSL 627
F + D+ Y + + + + MI P+L
Sbjct: 568 KAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNL 604
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
Length = 770
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 97/443 (21%), Positives = 163/443 (36%), Gaps = 74/443 (16%)
Query: 15 VRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPY-------APLRCKTCTAALN 67
+R T +P T A + IPLAA I P + P + Y P+RC C A +
Sbjct: 50 IRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMC 109
Query: 68 AFARVDFTAKIWICPFCYQRNHFPPHY-----------AAISETNLPCELYPQYTTVEYT 116
F + + + C FC N PP Y + L Y T++Y
Sbjct: 110 PFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYC 169
Query: 117 LPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYAR---SELKRAIGLLPDNAMVGLV 173
+ PNP P F+F++D + G + ELK + +P
Sbjct: 170 -----RKSKPPNP-----PAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQ---- 215
Query: 174 TFGTQAHVHELGFSDMSKV-YVFRGNKEISKDQVLEQXXXXXXXXXXXXXYQKAAVPNAF 232
+ +GF +KV + F +++ Q++ + VP
Sbjct: 216 ---EETSAIRVGFITYNKVLHFFNVKSNLAQPQMM-----------VVTDVGEVFVP--- 258
Query: 233 PNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATG---LLGAC 289
+ FL+ E + +++LLD++ PD + + T A + G L A
Sbjct: 259 ---LLDGFLVNYQESQSVIHNLLDQI-PDMFADSNENE----TVFAPVIQAGMEALKAAD 310
Query: 290 LPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQL 349
P G + P E PG + ++D + V + K+ F+ YD LAK
Sbjct: 311 CP--GKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKE-----KILFQPQTNVYDSLAKDC 363
Query: 350 VSQGHVLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSF-KRIFEDGEQSL 408
V+ G + LF V VA + + + TGG + +F + + F + D E+ +
Sbjct: 364 VAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIEKKI 423
Query: 409 GLCFNGALEIICSKDIKIQGIIG 431
G F+ + + S + G
Sbjct: 424 G--FDAIMRVRTSTGFRATDFFG 444
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 2 SEMASTDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRS-HPDIPTLPYAP---- 56
SE+++ P D +R T N P+ K +P I P + + DI P
Sbjct: 56 SELSNASP---DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI 112
Query: 57 LRCKTCTAALNAFARVDFTAKIWICPFCYQRNHFP 91
+RC+ C + +N F + W C FC N P
Sbjct: 113 VRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVP 147
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 2 SEMASTDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRS-HPDIPTLPYAP---- 56
SE+++ P D +R T N P+ K +P I P + + DI P
Sbjct: 172 SELSNASP---DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI 228
Query: 57 LRCKTCTAALNAFARVDFTAKIWICPFCYQRNHFP 91
+RC+ C + +N F + W C FC N P
Sbjct: 229 VRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVP 263
>pdb|3I93|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dutpase
Stop138t Mutant
Length = 158
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 265 VAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSH 324
+AP R TGVA++V G++G P +G + VG PGTI + E +
Sbjct: 57 LAPGRRALVRTGVAVAVPFGMVGLVHPRSG--LATRVGLSIVNSPGTIDAGYRGEIKVAL 114
Query: 325 KDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLF-ASALDQVGVA 369
+LD AAP V D +A+ LV + +++L S+ D+ G+A
Sbjct: 115 INLDP-AAPI---VVHRGDRIAQLLVQRVELVELVEVSSFDEAGLA 156
>pdb|3LOJ|A Chain A, Structure Of Mycobacterium Tuberculosis Dutpase H145a
Mutant
Length = 174
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 265 VAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSH 324
+AP R TGVA++V G++G P +G + VG PGTI + E +
Sbjct: 57 LAPGRRALVRTGVAVAVPFGMVGLVHPRSG--LATRVGLSIVNSPGTIDAGYRGEIKVAL 114
Query: 325 KDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLF-ASALDQVGVA 369
+LD AAP V D +A+ LV + +++L S+ D+ G+A
Sbjct: 115 INLDP-AAPI---VVHRGDRIAQLLVQRVELVELVEVSSFDEAGLA 156
>pdb|3HZA|A Chain A, Crystal Structure Of Dutpase H145w Mutant
Length = 174
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 265 VAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSH 324
+AP R TGVA++V G++G P +G + VG PGTI + E +
Sbjct: 57 LAPGRRALVRTGVAVAVPFGMVGLVHPRSG--LATRVGLSIVNSPGTIDAGYRGEIKVAL 114
Query: 325 KDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLF-ASALDQVGVA 369
+LD AAP V D +A+ LV + +++L S+ D+ G+A
Sbjct: 115 INLDP-AAPI---VVHRGDRIAQLLVQRVELVELVEVSSFDEAGLA 156
>pdb|3H6D|A Chain A, Structure Of The Mycobacterium Tuberculosis Dutpase D28n
Mutant
Length = 174
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 265 VAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSH 324
+AP R TGVA++V G++G P +G + VG PGTI + E +
Sbjct: 57 LAPGRRALVRTGVAVAVPFGMVGLVHPRSG--LATRVGLSIVNSPGTIDAGYRGEIKVAL 114
Query: 325 KDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLF-ASALDQVGVA 369
+LD AAP V D +A+ LV + +++L S+ D+ G+A
Sbjct: 115 INLDP-AAPI---VVHRGDRIAQLLVQRVELVELVEVSSFDEAGLA 156
>pdb|1SIX|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SLH|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SLH|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SLH|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SM8|A Chain A, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SM8|B Chain B, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SM8|C Chain C, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SMC|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SMC|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SMC|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SNF|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|1SNF|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|1SNF|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|2PY4|A Chain A, Full Length Structure Of The Mycobacterium Tuberculosis
Dutpase Complexed With Magnesium And
Alpha,Beta-Imido-Dutp
Length = 174
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 265 VAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSH 324
+AP R TGVA++V G++G P +G + VG PGTI + E +
Sbjct: 57 LAPGRRALVRTGVAVAVPFGMVGLVHPRSG--LATRVGLSIVNSPGTIDAGYRGEIKVAL 114
Query: 325 KDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLF-ASALDQVGVA 369
+LD AAP V D +A+ LV + +++L S+ D+ G+A
Sbjct: 115 INLDP-AAPI---VVHRGDRIAQLLVQRVELVELVEVSSFDEAGLA 156
>pdb|1MQ7|A Chain A, Crystal Structure Of Dutpase From Mycobacterium
Tuberculosis (rv2697c)
Length = 154
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 265 VAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSH 324
+AP R TGVA++V G++G P +G + VG PGTI + E +
Sbjct: 37 LAPGRRALVRTGVAVAVPFGMVGLVHPRSG--LATRVGLSIVNSPGTIDAGYRGEIKVAL 94
Query: 325 KDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLF-ASALDQVGVA 369
+LD AAP V D +A+ LV + +++L S+ D+ G+A
Sbjct: 95 INLDP-AAPI---VVHRGDRIAQLLVQRVELVELVEVSSFDEAGLA 136
>pdb|1SJN|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SJN|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SJN|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
Length = 170
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 265 VAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSH 324
+AP R TGVA++V G++G P +G + VG PGTI + E +
Sbjct: 37 LAPGRRALVRTGVAVAVPFGMVGLVHPRSG--LATRVGLSIVNSPGTIDAGYRGEIKVAL 94
Query: 325 KDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLF-ASALDQVGVA 369
+LD AAP V D +A+ LV + +++L S+ D+ G+A
Sbjct: 95 INLDP-AAPI---VVHRGDRIAQLLVQRVELVELVEVSSFDEAGLA 136
>pdb|3BVQ|A Chain A, Crystal Structure Of Apo Noti Restriction Endonuclease
pdb|3BVQ|B Chain B, Crystal Structure Of Apo Noti Restriction Endonuclease
Length = 383
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 380 GLVVLAESFGHSVFKDSFKRIFEDGEQSLGLC-FNGALEIICSKDIKIQGIIGPCTSLEK 438
G +AE FGH V+ + +Q+ G C F A +++ + +K + G C +
Sbjct: 11 GANFIAEFFGHRVYPEVVSTEAARNDQATGTCPFLTAAKLVETSCVKAETSRGVC--VVN 68
Query: 439 VRLRGEYYAWKMCGLDKSTCLTVFFDLSSSERLNTPGTINPQLYLQFLTSFQSPEGRSVL 498
+ E Y W +C + L F ++S +L G P LQF+ + +
Sbjct: 69 TAVDNERYDWLVC---PNRALDPLFXSAASRKLFGYGPTEP---LQFIAAPTLAD----Q 118
Query: 499 RVTTVTRQWVDSAV 512
V R+W+D V
Sbjct: 119 AVRDGIREWLDRGV 132
>pdb|3C25|A Chain A, Crystal Structure Of Noti Restriction Endonuclease Bound
To Cognate Dna
pdb|3C25|B Chain B, Crystal Structure Of Noti Restriction Endonuclease Bound
To Cognate Dna
Length = 383
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 380 GLVVLAESFGHSVFKDSFKRIFEDGEQSLGLC-FNGALEIICSKDIKIQGIIGPCTSLEK 438
G +AE FGH V+ + +Q+ G C F A +++ + +K + G C +
Sbjct: 11 GANFIAEFFGHRVYPEVVSTEAARNDQATGTCPFLTAAKLVETSCVKAETSRGVC--VVN 68
Query: 439 VRLRGEYYAWKMCGLDKSTCLTVFFDLSSSERLNTPGTINPQLYLQFLTSFQSPEGRSVL 498
+ E Y W +C + L F ++S +L G P LQF+ + +
Sbjct: 69 TAVDNERYDWLVC---PNRALDPLFMSAASRKLFGYGPTEP---LQFIAAPTLAD----Q 118
Query: 499 RVTTVTRQWVDSAV 512
V R+W+D V
Sbjct: 119 AVRDGIREWLDRGV 132
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 105 ELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLL 164
+L Q T VE +P + + P+ + RLS F + + E EL + EL GLL
Sbjct: 999 DLTSQQTEVELRMPSLLPDDFIPDVNTRLS--FYKRIASAKTENELEEIKVELIDRFGLL 1056
Query: 165 PDNAMVGLVTFGTQAHVHELGFSDMS 190
PD A L + +LG +
Sbjct: 1057 PDPARTLLDIARLRQQAQKLGIRKLE 1082
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,211,712
Number of Sequences: 62578
Number of extensions: 905828
Number of successful extensions: 1977
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1921
Number of HSP's gapped (non-prelim): 27
length of query: 766
length of database: 14,973,337
effective HSP length: 106
effective length of query: 660
effective length of database: 8,340,069
effective search space: 5504445540
effective search space used: 5504445540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)