Query 004238
Match_columns 766
No_of_seqs 187 out of 784
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 18:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nut_A Protein transport prote 100.0 1E-158 5E-163 1401.4 72.2 740 1-766 3-767 (769)
2 1m2o_A SEC23, protein transpor 100.0 4E-158 1E-162 1398.8 69.2 738 4-765 1-765 (768)
3 3eh1_A Protein transport prote 100.0 5E-136 2E-140 1200.7 68.1 663 8-765 36-751 (751)
4 3efo_B SEC24 related gene fami 100.0 1E-133 3E-138 1186.0 61.3 670 8-765 43-767 (770)
5 3eh2_A Protein transport prote 100.0 1E-132 3E-137 1176.8 61.9 673 9-765 40-763 (766)
6 1m2v_B SEC24, protein transpor 100.0 4E-131 2E-135 1173.7 59.9 671 8-765 175-926 (926)
7 1pcx_A Protein transport prote 100.0 1E-130 4E-135 1166.6 63.4 666 8-765 59-810 (810)
8 2yrc_A Protein transport prote 99.6 3.1E-17 1.1E-21 127.0 1.8 52 52-103 5-58 (59)
9 4fx5_A VON willebrand factor t 99.2 4.3E-08 1.5E-12 109.8 39.0 314 134-554 77-409 (464)
10 3ibs_A Conserved hypothetical 98.7 6.1E-07 2.1E-11 89.9 19.6 157 133-387 10-197 (218)
11 1q0p_A Complement factor B; VO 98.3 8.4E-06 2.9E-10 81.7 16.0 172 133-389 14-206 (223)
12 4b4t_W RPN10, 26S proteasome r 98.3 3.1E-06 1.1E-10 87.0 12.7 147 136-380 5-163 (268)
13 1ijb_A VON willebrand factor; 98.3 2.7E-05 9.2E-10 77.1 18.6 163 133-390 12-183 (202)
14 1v7p_C Integrin alpha-2; snake 98.3 3.7E-05 1.3E-09 75.8 18.3 162 133-390 5-183 (200)
15 1atz_A VON willebrand factor; 98.2 5.4E-05 1.8E-09 73.9 18.7 158 133-390 4-172 (189)
16 2b2x_A Integrin alpha-1; compu 98.2 3.4E-05 1.2E-09 77.5 17.4 163 133-390 21-199 (223)
17 1shu_X Anthrax toxin receptor 98.2 6.9E-05 2.4E-09 72.4 18.5 151 133-383 5-162 (182)
18 1pt6_A Integrin alpha-1; cell 98.1 3.9E-05 1.3E-09 76.5 14.9 163 133-390 6-184 (213)
19 1n3y_A Integrin alpha-X; alpha 98.1 2.8E-05 9.5E-10 76.4 13.5 161 133-389 8-180 (198)
20 1mf7_A Integrin alpha M; cell 98.0 4.6E-05 1.6E-09 74.6 13.9 163 133-390 4-177 (194)
21 2odp_A Complement C2; C3/C5 co 98.0 2.8E-05 9.7E-10 88.3 14.0 183 133-400 8-209 (509)
22 4hqf_A Thrombospondin-related 98.0 0.0001 3.5E-09 76.9 17.1 165 133-390 20-197 (281)
23 2x31_A Magnesium-chelatase 60 98.0 3.8E-07 1.3E-11 89.3 -1.6 110 133-310 4-118 (189)
24 1rrk_A Complement factor B; BB 98.0 3.3E-05 1.1E-09 87.4 14.2 180 135-401 2-202 (497)
25 3n2n_F Anthrax toxin receptor 98.0 0.00011 3.9E-09 71.0 14.6 157 133-387 6-168 (185)
26 2x5n_A SPRPN10, 26S proteasome 97.9 0.00013 4.4E-09 71.5 14.7 144 136-378 4-159 (192)
27 4hqo_A Sporozoite surface prot 97.9 0.0003 1E-08 72.8 17.8 176 133-402 17-204 (266)
28 1mjn_A Integrin alpha-L; rossm 97.9 0.00015 5.2E-09 70.1 14.7 154 134-390 2-167 (179)
29 3zqk_A VON willebrand factor; 97.8 0.00053 1.8E-08 67.4 16.0 49 133-181 20-73 (199)
30 1kcq_A Gelsolin, brevin, ADF, 97.6 0.00016 5.5E-09 63.4 8.3 84 624-723 2-88 (104)
31 2xgg_A Microneme protein 2; A/ 97.6 0.00099 3.4E-08 64.2 14.7 144 133-371 16-168 (178)
32 3hrz_D Complement factor B; se 97.6 6.8E-05 2.3E-09 89.2 7.7 189 134-402 243-445 (741)
33 3k6s_A Integrin alpha-X; cell 97.1 0.00072 2.5E-08 83.3 9.0 162 134-390 130-302 (1095)
34 1svq_A Severin; actin-binding; 97.1 0.00051 1.7E-08 61.2 5.6 85 623-723 11-99 (114)
35 1jey_B KU80; double-strand DNA 96.8 0.0051 1.7E-07 70.5 11.5 44 135-178 8-62 (565)
36 3fcs_B Integrin beta-3; beta p 96.5 0.11 3.7E-06 60.5 19.8 279 133-468 110-404 (690)
37 3t3p_B Integrin beta-3; integr 96.2 1.9 6.4E-05 47.3 27.5 278 133-468 110-404 (472)
38 3fg7_A Villin-1; actin binding 95.8 0.0083 2.8E-07 65.3 5.6 80 623-718 281-368 (398)
39 1j72_A Macrophage capping prot 95.7 0.013 4.4E-07 62.8 6.9 80 623-718 246-336 (347)
40 2fh1_A Gelsolin; calcium, cont 95.7 0.01 3.5E-07 63.5 5.9 80 623-718 227-315 (344)
41 3rag_A Uncharacterized protein 95.4 0.069 2.4E-06 53.4 10.2 46 133-178 133-182 (242)
42 3v4v_B Integrin beta-7; cell a 95.3 1.5 5.1E-05 48.3 21.4 281 133-468 131-427 (503)
43 3fg6_A Adseverin, scinderin; C 95.1 0.012 4.1E-07 63.5 4.1 47 623-669 268-319 (371)
44 3vi3_B Integrin beta-1; beta p 94.9 5.4 0.00018 43.4 25.8 278 133-468 121-413 (454)
45 1j72_A Macrophage capping prot 94.9 0.045 1.5E-06 58.6 7.7 87 624-727 135-224 (347)
46 2ww8_A RRGA, cell WALL surface 94.0 0.16 5.6E-06 60.8 10.6 48 133-180 223-280 (893)
47 1d0n_A Horse plasma gelsolin; 93.9 0.087 3E-06 62.0 8.0 49 621-669 610-663 (729)
48 1jey_A KU70; double-strand DNA 93.4 1.7 5.8E-05 49.9 17.4 68 272-364 140-208 (609)
49 1d0n_A Horse plasma gelsolin; 93.0 0.2 7E-06 58.8 9.0 85 623-723 132-219 (729)
50 1yvr_A RO autoantigen, 60-kDa 92.8 0.42 1.4E-05 54.2 11.1 32 272-308 444-475 (538)
51 2iue_A Pactolus I-domain; memb 91.8 5.2 0.00018 39.1 16.0 45 134-178 3-51 (212)
52 3k6s_B Integrin beta-2; cell r 91.5 0.22 7.7E-06 57.7 6.7 208 133-386 103-324 (687)
53 2fh1_A Gelsolin; calcium, cont 91.3 0.22 7.6E-06 53.0 6.1 45 624-668 124-172 (344)
54 3fg6_A Adseverin, scinderin; C 90.4 0.37 1.2E-05 51.8 6.7 45 624-668 165-214 (371)
55 3fg7_A Villin-1; actin binding 79.2 0.39 1.3E-05 52.1 0.0 46 624-669 178-227 (398)
56 2j9u_B VPS36, vacuolar protein 78.4 0.47 1.6E-05 37.7 0.2 20 76-95 15-34 (76)
57 2nvo_A RO sixty-related protei 75.9 6.9 0.00024 44.0 9.1 45 252-308 427-471 (535)
58 1gh9_A 8.3 kDa protein (gene M 74.2 1.1 3.9E-05 35.5 1.4 31 54-90 2-32 (71)
59 2gmg_A Hypothetical protein PF 73.1 1.1 3.6E-05 38.4 1.1 36 55-95 66-101 (105)
60 3rag_A Uncharacterized protein 69.6 17 0.00056 36.2 9.0 44 344-387 29-76 (242)
61 2a20_A Regulating synaptic mem 67.9 1.2 4.2E-05 33.4 0.3 29 55-87 32-60 (62)
62 1pft_A TFIIB, PFTFIIBN; N-term 62.5 9.5 0.00032 27.8 4.3 29 56-87 5-33 (50)
63 1vq8_Z 50S ribosomal protein L 60.0 5 0.00017 32.9 2.6 29 56-88 27-55 (83)
64 4gat_A Nitrogen regulatory pro 53.5 4.8 0.00016 31.4 1.4 33 54-87 7-39 (66)
65 6rxn_A Rubredoxin; electron tr 52.6 3.1 0.00011 30.0 0.1 31 57-87 5-39 (46)
66 2hgo_A CASSIICOLIN; toxin, dis 51.3 8.1 0.00028 23.3 1.8 26 58-84 2-27 (27)
67 1s24_A Rubredoxin 2; electron 49.7 3.6 0.00012 34.0 0.1 33 55-87 34-77 (87)
68 2vut_I AREA, nitrogen regulato 49.5 4.2 0.00014 28.9 0.4 31 56-87 1-31 (43)
69 1yk4_A Rubredoxin, RD; electro 44.5 5.1 0.00017 29.7 0.2 11 77-87 34-44 (52)
70 1e8j_A Rubredoxin; iron-sulfur 40.3 5.8 0.0002 29.4 -0.1 9 78-86 36-44 (52)
71 4rxn_A Rubredoxin; electron tr 40.1 6.8 0.00023 29.3 0.3 30 58-87 5-45 (54)
72 1dx8_A Rubredoxin; electron tr 40.0 6.9 0.00024 31.0 0.3 11 77-87 39-49 (70)
73 2csz_A Synaptotagmin-like prot 39.1 10 0.00035 30.3 1.2 31 57-87 43-73 (76)
74 1yuz_A Nigerythrin; rubrythrin 38.9 9.1 0.00031 37.1 1.1 25 56-87 171-195 (202)
75 1gnf_A Transcription factor GA 38.0 5.6 0.00019 28.7 -0.5 32 55-87 3-34 (46)
76 1x0t_A Ribonuclease P protein 37.1 11 0.00039 33.1 1.3 35 57-91 66-107 (120)
77 3j21_g 50S ribosomal protein L 37.1 11 0.00036 27.9 0.9 29 55-91 13-41 (51)
78 2kn9_A Rubredoxin; metalloprot 36.9 6.9 0.00024 31.8 -0.1 10 77-86 59-68 (81)
79 2v3b_B Rubredoxin 2, rubredoxi 36.8 7 0.00024 29.3 -0.1 10 77-86 35-44 (55)
80 3j20_Y 30S ribosomal protein S 34.6 20 0.00069 26.2 2.1 26 56-87 19-46 (50)
81 2zet_C Melanophilin; complex, 28.8 12 0.00041 34.5 0.0 33 57-89 86-119 (153)
82 2akl_A PHNA-like protein PA012 28.6 28 0.00096 30.7 2.3 29 55-88 26-54 (138)
83 2lk0_A RNA-binding protein 5; 27.9 15 0.00053 24.1 0.4 13 77-89 4-16 (32)
84 2avu_E Flagellar transcription 27.7 16 0.00054 34.9 0.7 28 55-85 133-161 (192)
85 2kdx_A HYPA, hydrogenase/ureas 27.7 19 0.00065 31.5 1.2 28 56-89 73-101 (119)
86 2apo_B Ribosome biogenesis pro 27.3 26 0.00088 26.7 1.6 33 53-95 3-37 (60)
87 1w7p_D VPS36P, YLR417W; ESCRT- 27.3 13 0.00045 41.7 0.0 20 76-95 115-134 (566)
88 4hc9_A Trans-acting T-cell-spe 26.6 14 0.00049 32.2 0.1 30 56-86 5-34 (115)
89 2k3r_A Ribonuclease P protein 26.4 19 0.00066 31.8 0.9 35 57-91 61-102 (123)
90 1zbd_B Rabphilin-3A; G protein 26.3 25 0.00084 31.6 1.6 33 57-89 73-109 (134)
91 1zso_A Hypothetical protein; s 24.2 23 0.00078 33.0 1.0 35 56-90 37-82 (164)
92 1nj3_A NPL4; NZF domain, rubre 23.8 25 0.00086 22.7 0.9 16 76-91 4-19 (31)
93 3dfx_A Trans-acting T-cell-spe 22.4 11 0.00038 29.0 -1.2 32 55-87 6-37 (63)
94 2k1p_A Zinc finger RAN-binding 21.9 22 0.00075 23.5 0.3 14 77-90 5-18 (33)
95 2js4_A UPF0434 protein BB2007; 21.5 83 0.0028 24.7 3.6 32 55-90 7-38 (70)
96 1bbo_A Human enhancer-binding 21.0 23 0.00078 25.4 0.3 34 56-89 1-40 (57)
97 4gzn_C ZFP-57, zinc finger pro 20.8 24 0.00082 26.6 0.4 34 56-89 4-43 (60)
98 3u50_C Telomerase-associated p 20.4 49 0.0017 31.0 2.5 29 57-91 43-71 (172)
No 1
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=1.4e-158 Score=1401.40 Aligned_cols=740 Identities=48% Similarity=0.889 Sum_probs=663.0
Q ss_pred CCCCCCC----CcCCCCeeEeeccccCCCHHHhhhCCCceeEEEccCCCCCCCCCCCCCCcccCC--CCceecCceeEEc
Q 004238 1 MSEMAST----DPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT--CTAALNAFARVDF 74 (766)
Q Consensus 1 ~~~~~~~----~~~~~~~vR~t~~~~P~t~~~~~~~~iPlg~~v~P~~~~~~ip~~~~~p~RC~~--C~ayiNp~~~~~~ 74 (766)
|+.|+|. +||+++|||+|||+||.+++++++++|||||+|+||++.+++|+++++|+||++ |+|||||||+|+.
T Consensus 3 ~~~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~ 82 (769)
T 2nut_A 3 MGMTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDY 82 (769)
T ss_dssp ----CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEET
T ss_pred CcccchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCCCCCcCCCCCCcCCCCCCCeEECCceEEeC
Confidence 4556765 379999999999999999999999999999999999988889999999999999 9999999999999
Q ss_pred CCceEEecCCCCCCCCCcccccCCCCCCCccccCCCceEEEEecCCCCCCCCCCCCCCCCcEEEEEEEcccchHHHHHHH
Q 004238 75 TAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYAR 154 (766)
Q Consensus 75 ~~~~W~C~~C~~~N~~p~~y~~~~~~~~~pEL~p~~~tvey~~~~~~~~~~~~~~~~~~~p~~vFvID~s~~~~~l~~~~ 154 (766)
+|++|+||||++.|++|++|..+++.++||||.|+++||||++|++| | .||+|+||||+|.+++++++++
T Consensus 83 ~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~-------p---~pp~~vFvIDvS~~a~~l~~l~ 152 (769)
T 2nut_A 83 RAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP-------Q---MPLIFLYVVDTCMEDEDLQALK 152 (769)
T ss_dssp TTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSC-------C---CCCEEEEEEECCSCHHHHHHHH
T ss_pred CCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCC-------C---CCCEEEEEEECCccHHHHHHHH
Confidence 99999999999999999999988888999999999999999999885 4 7899999999999999999999
Q ss_pred HHHHHHhccCCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhhccccC--cccccCCCcccCCC-CC
Q 004238 155 SELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQLGLSAS--GRRAAGGYQKAAVP-NA 231 (766)
Q Consensus 155 ~~l~~~l~~lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l~~~d~--~~~~~~g~~~~~~~-~~ 231 (766)
++|+++|+.||++++|||||||+.||||+++.+.+++++||+|+++|+.+|+++|++++|. |.. ++ .+
T Consensus 153 ~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~---------~~~~~ 223 (769)
T 2nut_A 153 ESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQA---------TRGPQ 223 (769)
T ss_dssp HHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-----------------------
T ss_pred HHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccc---------ccccc
Confidence 9999999999999999999999999999999998999999999999999999889988652 100 00 01
Q ss_pred CCC-CCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhccCCCCccEEEEEeCCCCCCCCc
Q 004238 232 FPN-SGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPG 310 (766)
Q Consensus 232 ~~~-~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~gGrIi~f~sg~pt~GpG 310 (766)
+.| .|.++||+|++||++.|+++|++|+++.|++++++++.||+|+||++|..+|+.++++.||||++|++|+||.|||
T Consensus 224 ~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG 303 (769)
T 2nut_A 224 VQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPG 303 (769)
T ss_dssp -----CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSS
T ss_pred ccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCC
Confidence 344 6679999999999999999999999988888889999999999999999999987788999999999999999999
Q ss_pred ccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhhcccceEEEeCCCCc
Q 004238 311 TIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFGH 390 (766)
Q Consensus 311 ~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~ 390 (766)
+|+.+++++++|+|+|++++++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.
T Consensus 304 ~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~ 383 (769)
T 2nut_A 304 MVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNT 383 (769)
T ss_dssp CCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSS
T ss_pred CCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCch
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhcccc-ccceeeeEEEEEecCCceEEEEEcCcccccccc--------cCCCccceeeecCCCCceEEE
Q 004238 391 SVFKDSFKRIFEDGEQS-LGLCFNGALEIICSKDIKIQGIIGPCTSLEKVR--------LRGEYYAWKMCGLDKSTCLTV 461 (766)
Q Consensus 391 ~~~~~~l~~~l~~~~~~-~~~~~~a~l~vr~S~gl~v~~~~G~~~~~~~~~--------g~~~~~~~~l~~~~~~~s~~~ 461 (766)
++|++++++.|++...+ +.+||+|+||||||+|++|++++||+++.++|+ |+++++.|+++++++++||+|
T Consensus 384 ~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v 463 (769)
T 2nut_A 384 SLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAI 463 (769)
T ss_dssp HHHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEE
T ss_pred hhHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEE
Confidence 99999999999875432 369999999999999999999999999775543 688999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCcEEEEEEEEeecCCCcEEEEEEeeccccccCCCCH---HHHHhccChhHHHHHHHHHHHHHh
Q 004238 462 FFDLSSSERLNTPGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSS---EELVQGFDQESAAVVMARLTSLKM 538 (766)
Q Consensus 462 ~f~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~---~~i~~~~D~~a~~~llak~a~~~~ 538 (766)
+|++++..+.+ ..+...+|||+|++||+.+|+|||||||+++++++ ++ .++|+++|+||++++|+|+|+.++
T Consensus 464 ~f~~~~~~~~~--l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~---~~~~~~~v~~~~Dqea~~~llar~a~~~~ 538 (769)
T 2nut_A 464 YFEVVNQHNAP--IPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWAD---AQTQIQNIAASFDQEAAAILMARLAIYRA 538 (769)
T ss_dssp EEEEC------------CCEEEEEEEEEEETTSCEEEEEEEEEECBCC---GGGHHHHHHHTBCHHHHHHHHHHHHHHHH
T ss_pred EEEecCccccc--cCCCCeEEEEEEEEEECCCCCEEEEEEeecccccC---CcccHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 99999874210 12468899999999999999999999999999998 54 599999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhcccccCCCCCccCCccccchHHHHHHhccccccCCCCCChHHHHHHHHHHccCCHHH
Q 004238 539 EMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENITN 618 (766)
Q Consensus 539 ~~~~~~~~~~~l~~~l~~~~~~~~~y~~~~~~s~~lp~~l~~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~~~~~~ 618 (766)
.+++..|+++||+++|++++++|+.|||+++++|+||++|++||+|||+|+||++|+.++++||||+|++++++++++.+
T Consensus 539 ~~~~~~d~~~~ld~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~ 618 (769)
T 2nut_A 539 ETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQ 618 (769)
T ss_dssp TTC---CHHHHHHHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccceeeccCCCCcccccccccccCCeEEEEeCCcEEEEEECCchhHHhhcCCCCChhhhHHHHHhhCcHHHHHH
Q 004238 619 AAVMIQPSLISYSFNSLPQPALLDVASIAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAEL 698 (766)
Q Consensus 619 ~~~~iyP~L~~~~~~~~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 698 (766)
++.||||+||+||.++.|++++||+++|.++||||||+|++++||+|++|++|+++||+++|||++|+++|++|+.+|++
T Consensus 619 ~~~~iyP~L~~~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~a~~ 698 (769)
T 2nut_A 619 SLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQE 698 (769)
T ss_dssp HHHHHSCEEEEECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCEEEeccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHHHHH
Confidence 99999999999998878999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEeCCCChHHHHHHhhcCCCCcCCcccccCC---CcccccCCchHHHHHHHHHHHHhcC
Q 004238 699 IIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEIAAG---SDIIFTDDVSLQVFIEHLQRLAVQS 766 (766)
Q Consensus 699 i~~~R~p~p~~~~~~~g~s~~r~l~s~L~p~~~~~~~~~~~~~---~~~~~t~~~Sy~~f~~~L~~~i~~~ 766 (766)
|+++|+|+|++++|+||+||+|||++||+|+.+|++ ++|+| ++.++|||+||++||+||+|+||++
T Consensus 699 i~~~R~p~Pr~i~~~~g~sqaRfl~sklnps~~~~~--~~~~~~~~~~~~~tddvsl~~f~~~l~~~~v~~ 767 (769)
T 2nut_A 699 ILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNN--MYAWGQESGAPILTDDVSLQVFMDHLKKLAVSS 767 (769)
T ss_dssp HHHHSSSCCEEEEEETTCSTTHHHHHHCC------------------------CCSHHHHHHHHHHHHSSC
T ss_pred HHhcCCCCCeEEEEcCCCcHHHHHHHhcCCcccccC--CCcCCCcCCccccccccCHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999875 33444 7899999999999999999999873
No 2
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=4.3e-158 Score=1398.85 Aligned_cols=738 Identities=43% Similarity=0.804 Sum_probs=672.1
Q ss_pred CCCCCcCCCCeeEeeccccCCCHHHhhhCCCceeEEEccCCCCCCCCCCCCCCcccCC--CCceecCceeEEcCCceEEe
Q 004238 4 MASTDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT--CTAALNAFARVDFTAKIWIC 81 (766)
Q Consensus 4 ~~~~~~~~~~~vR~t~~~~P~t~~~~~~~~iPlg~~v~P~~~~~~ip~~~~~p~RC~~--C~ayiNp~~~~~~~~~~W~C 81 (766)
|||+++|+++|||+|||+||.|++++++++|||||+|+||++.+++|+++++|+||++ |+|||||||+|+.+|++|+|
T Consensus 1 ~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C 80 (768)
T 1m2o_A 1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSC 80 (768)
T ss_dssp -CHHHHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCTTCCEECSCCCBCCSTTTCCBCCTTSCEETTTTEECC
T ss_pred CCcccccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCCCCCcCCCCCCccCCCCCCeEECCceEEeCCCCEEEc
Confidence 6888999999999999999999999999999999999999987889999999999999 99999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCCCCCccccCCCceEEEEecCCCCCCCCCCCCCCCCcEEEEEEEcccchHHHHHHHHHHHHHh
Q 004238 82 PFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAI 161 (766)
Q Consensus 82 ~~C~~~N~~p~~y~~~~~~~~~pEL~p~~~tvey~~~~~~~~~~~~~~~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l 161 (766)
|||++.|++|++|..+++.++|||| +++||||++|.+ +| .||+|+||||+|.+++++++++++|+++|
T Consensus 81 ~~C~~~N~~P~~y~~~~~~~~~pEL--~~~tvEy~~p~~-------~~---~pp~~vFvIDvs~~~~~l~~l~~sl~~~L 148 (768)
T 1m2o_A 81 PICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYITNKP-------VT---VPPIFFFVVDLTSETENLDSLKESIITSL 148 (768)
T ss_dssp TTTCCCCBCCGGGCC---CCCCGGG--TCSEEEEECSCC-------CC---SCCEEEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCChHHccCCcccCChhh--ccCCEEEECCCC-------CC---CCCEEEEEEECCcCHHHHHHHHHHHHHHH
Confidence 9999999999999988888999999 999999999964 56 89999999999999999999999999999
Q ss_pred ccCCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhh-ccccC---cccccCCCcccCCCCCCCCC--
Q 004238 162 GLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQL-GLSAS---GRRAAGGYQKAAVPNAFPNS-- 235 (766)
Q Consensus 162 ~~lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l-~~~d~---~~~~~~g~~~~~~~~~~~~~-- 235 (766)
+.||++++|||||||+.||||+++.+.+++++||+|+++|+.+|+++|+ ++++. +..+ + ..++.|.
T Consensus 149 ~~Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~-----~---~~~~~f~p~ 220 (768)
T 1m2o_A 149 SLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAAS-----H---LPNAMNKVT 220 (768)
T ss_dssp HTSCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC-----------------------CC
T ss_pred HhCCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHHHhhccccccCCccc-----c---ccccccccc
Confidence 9999999999999999999999998888999999999999999998888 77653 1000 0 0012222
Q ss_pred --CcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhccCCCCccEEEEEeCCCCCCCCcccc
Q 004238 236 --GVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPGTIV 313 (766)
Q Consensus 236 --p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~gGrIi~f~sg~pt~GpG~l~ 313 (766)
|.++||+|++||++.|+++|++|++++|++++++++.||+|+||++|..+|++++++.||||++|++|+||.|||+|+
T Consensus 221 ~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~ 300 (768)
T 1m2o_A 221 PFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIV 300 (768)
T ss_dssp SSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCS
T ss_pred cCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccc
Confidence 358999999999999999999999998888999999999999999999999987778999999999999999999999
Q ss_pred cCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhhcccceEEEeCCCCchhh
Q 004238 314 SKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFGHSVF 393 (766)
Q Consensus 314 ~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~ 393 (766)
.+++++++|+|+|++++++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+.|
T Consensus 301 ~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~ 380 (768)
T 1m2o_A 301 NSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIF 380 (768)
T ss_dssp CSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHH
T ss_pred ccccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccc-ccceeeeEEEEEecCCceEEEEEcCcccccc-cc--------cCCCccceeeecCCCCceEEEEE
Q 004238 394 KDSFKRIFEDGEQS-LGLCFNGALEIICSKDIKIQGIIGPCTSLEK-VR--------LRGEYYAWKMCGLDKSTCLTVFF 463 (766)
Q Consensus 394 ~~~l~~~l~~~~~~-~~~~~~a~l~vr~S~gl~v~~~~G~~~~~~~-~~--------g~~~~~~~~l~~~~~~~s~~~~f 463 (766)
+++++|.|++...+ +++||+|+||||||+|++|++++||+++.++ |+ |+++++.|+++++++++||+|+|
T Consensus 381 ~~~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f 460 (768)
T 1m2o_A 381 KQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFF 460 (768)
T ss_dssp HHHHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEE
T ss_pred HHHHHHHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEE
Confidence 99999999874322 4689999999999999999999999997653 21 68899999999999999999999
Q ss_pred EecCCCCCC---C--CCC--CCCcEEEEEEEEeecCCCcEEEEEEeeccccccCCCCHHHHHhccChhHHHHHHHHHHHH
Q 004238 464 DLSSSERLN---T--PGT--INPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSL 536 (766)
Q Consensus 464 ~~~~~~~~~---~--~~~--~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~i~~~~D~~a~~~llak~a~~ 536 (766)
++++..... . ... +...+|||||++||+.+|+|||||||+++++++ +.+.++|+++|+||++++|+|+|+.
T Consensus 461 ~~~~~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~--~~~~~v~~~~Dqea~~~llar~av~ 538 (768)
T 1m2o_A 461 EIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLP--FGTPAIAASFDQEAAAVLMARIAVH 538 (768)
T ss_dssp EECCC-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEEC--TTCHHHHHTBCHHHHHHHHHHHHHH
T ss_pred EeccccccccccccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccC--ccHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999976310 0 001 467899999999999999999999999999997 2268999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHHHHHHHhcccccCCCCCccCCccccchHHHHHHhccccccCCCCCChHHHHHHHHHHccCCH
Q 004238 537 KMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENI 616 (766)
Q Consensus 537 ~~~~~~~~~~~~~l~~~l~~~~~~~~~y~~~~~~s~~lp~~l~~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~~~~ 616 (766)
++.++++.|+|+||+++|++++++|+.|||+++++|+||++|++||+|||+|+||++|++++++||||+|+|++++++++
T Consensus 539 ~~~~~~~~d~r~~l~~~li~l~~~~~~Yrk~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~ 618 (768)
T 1m2o_A 539 KAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDT 618 (768)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHSBCCTTCGGGCBCCTTTTHHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTSCH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhcccccCCCCCChhHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccceeeccCCCCcccccccccccCCeEEEEeCCcEEEEEECCchhHHhhcCCCCChhhhHHHHHhhCcHHHH
Q 004238 617 TNAAVMIQPSLISYSFNSLPQPALLDVASIAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDA 696 (766)
Q Consensus 617 ~~~~~~iyP~L~~~~~~~~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 696 (766)
.+++.||||+||+||.++.|++++||+++|+++||||||+|++++||+|++|++|+++||+++|+|++++++|++|+.+|
T Consensus 619 ~~~l~~iyP~L~~~~~~~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~ll~~p~~~a 698 (768)
T 1m2o_A 619 TNSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEA 698 (768)
T ss_dssp HHHHHHHSCEEEEECSSSCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCeEEEecCCCCCcceeCcHHHcCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhhHHHHhhhhHHHH
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEeCCCChHHHHHHhhcCCCCcCCcccccCCCcccccCCchHHHHHHHHHHHHhc
Q 004238 697 ELIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEIAAGSDIIFTDDVSLQVFIEHLQRLAVQ 765 (766)
Q Consensus 697 ~~i~~~R~p~p~~~~~~~g~s~~r~l~s~L~p~~~~~~~~~~~~~~~~~~t~~~Sy~~f~~~L~~~i~~ 765 (766)
++|+++|+|+|++++|+||+||+|||++||+||++|+++ +++++..++|||+||++||+||||+||+
T Consensus 699 ~~i~~~R~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~--~~~~~~~i~tdd~S~~~f~~~L~k~~v~ 765 (768)
T 1m2o_A 699 AELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDM--ARGGSTIVLTDDVSLQNFMTHLQQVAVS 765 (768)
T ss_dssp HHHHHTCSSCCEEEEEETTCGGGHHHHTTSBCC-------------CCCCCCSCCHHHHHHHHHHHHCC
T ss_pred HHHHhcCCCCceEEEECCCCcHHHHHHHHcCCCcccccc--ccCCccccccCCcCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998752 3456778999999999999999999987
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=5e-136 Score=1200.68 Aligned_cols=663 Identities=21% Similarity=0.296 Sum_probs=593.4
Q ss_pred CcCCCCeeEeeccccCCCHHHhhhCCCceeEEEccCCCCCCCCCCCC-CCcccCCCCceecCceeEEcCCceEEecCCCC
Q 004238 8 DPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPY-APLRCKTCTAALNAFARVDFTAKIWICPFCYQ 86 (766)
Q Consensus 8 ~~~~~~~vR~t~~~~P~t~~~~~~~~iPlg~~v~P~~~~~~ip~~~~-~p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~ 86 (766)
.|++|+|||+|||+||.|++++++++||||++|+||++.+++|++++ +|+||++|||||||||+|.+ +++|+||||+.
T Consensus 36 ~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~~P~v~~~~p~RC~rCrayiNPf~~f~~-~~~w~Cn~C~~ 114 (751)
T 3eh1_A 36 LNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRSCRTYINPFVSFID-QRRWKCNLCYR 114 (751)
T ss_dssp HSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSCCCEECCSCCCBCTTTCCBCCTTCEESS-SSEEECTTTCC
T ss_pred cCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCCCCCccCCCCCCcccCccCEeCCceEEec-CCEEEcccccC
Confidence 49999999999999999999999999999999999998888998766 58999999999999999954 69999999999
Q ss_pred CCCCCccccc--C----CCCCCCccccCCCceEEEEecCCCCCCCCCCCCCCCCcEEEEEEEcccchHH---HHHHHHHH
Q 004238 87 RNHFPPHYAA--I----SETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEE---LGYARSEL 157 (766)
Q Consensus 87 ~N~~p~~y~~--~----~~~~~~pEL~p~~~tvey~~~~~~~~~~~~~~~~~~~p~~vFvID~s~~~~~---l~~~~~~l 157 (766)
.|++|++|.. + .+.++|||| +++||||++|++|++ |+| .||+|+||||+|..+++ +++++++|
T Consensus 115 ~N~~P~~y~~~~~~~~~~d~~~rpEL--~~~tvEy~~p~~y~~---r~p---~pp~yvFvIDvs~~a~~~g~l~~~~~sl 186 (751)
T 3eh1_A 115 VNDVPEEFMYNPLTRSYGEPHKRPEV--QNSTVEFIASSDYML---RPP---QPAVYLFVLDVSHNAVEAGYLTILCQSL 186 (751)
T ss_dssp EEECCGGGC---------CGGGSHHH--HCSEEEEEECGGGCS---SSC---CCCEEEEEEECSHHHHHHTHHHHHHHHH
T ss_pred CCCCCHHHhcccccccccCcccCchh--ccceEEEEcChhhhc---CCC---CCcEEEEEEEccHhhhhhhHHHHHHHHH
Confidence 9999999953 2 356789999 899999999999997 677 99999999999999988 89999999
Q ss_pred HHHhccCCCCc--EEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhhccccCcccccCCCcccCCCCCCCCC
Q 004238 158 KRAIGLLPDNA--MVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQLGLSASGRRAAGGYQKAAVPNAFPNS 235 (766)
Q Consensus 158 ~~~l~~lp~~~--~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l~~~d~~~~~~~g~~~~~~~~~~~~~ 235 (766)
+++|+.||+++ +|||||||+.||||+++.+. ++ ++|++++|.+ |+|+
T Consensus 187 ~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~---------------~~-~qmlvv~dl~---------------d~f~ 235 (751)
T 3eh1_A 187 LENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGL---------------SQ-PQMLIVSDID---------------DVFL 235 (751)
T ss_dssp HHHTTTSSCCTTCEEEEEEESSSEEEEECCTTC---------------SS-CEEEEESCTT---------------CTTS
T ss_pred HHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCc---------------cc-ceeecccccc---------------ccCC
Confidence 99999999865 99999999999999998654 23 4788887753 3678
Q ss_pred Cc-ccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhccCCCCccEEEEEeCCCCCCCCccccc
Q 004238 236 GV-SRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPGTIVS 314 (766)
Q Consensus 236 p~-~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~gGrIi~f~sg~pt~GpG~l~~ 314 (766)
|. ++||+|++||++.|+++|++|+.+ +++++++.||+|+||++|..+|+ ..||||++|++|+||.|||+|+.
T Consensus 236 P~~~~~lv~l~e~~~~i~~lL~~Lp~~---~~~~~~~~~~~G~AL~aA~~ll~----~~GGrI~~F~sg~pt~GpG~l~~ 308 (751)
T 3eh1_A 236 PTPDSLLVNLYESKELIKDLLNALPNM---FTNTRETHSALGPALQAAFKLMS----PTGGRVSVFQTQLPSLGAGLLQS 308 (751)
T ss_dssp CCGGGTSEETTTTHHHHHHHHHHGGGT---STTCSCCCCCHHHHHHHHHHHHT----TTCEEEEEEECSCCCSSTTCCCC
T ss_pred CChhhhcccHHHHHHHHHHHHHhhhHh---hcCCCCCccchHHHHHHHHHHhh----cCCCEEEEEecCCCCCCCCcccc
Confidence 84 899999999999999999999874 67888999999999999999998 78999999999999999999999
Q ss_pred CCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhhcccceEEEeCCCCch---
Q 004238 315 KDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFGHS--- 391 (766)
Q Consensus 315 ~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~~--- 391 (766)
+++++ .|+|. ++ +++++++.+||++||++|+++||+||+|+++.+|+|+++|+.+++.|||.+++|++|+.+
T Consensus 309 r~~~~-~~~~~---ke-~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~ 383 (751)
T 3eh1_A 309 REDPN-QRSST---KV-VQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNP 383 (751)
T ss_dssp CCCSC-GGGGS---SS-CTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBH
T ss_pred ccccc-cCCCc---hh-hhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccch
Confidence 98655 46653 33 678999999999999999999999999999999999999999999999999999999863
Q ss_pred ----hhHHHHHHHHhhccccccceeeeEEEEEecCCceEEEEEcCcccccccccCCCccceeeecCCCCceEEEEEEecC
Q 004238 392 ----VFKDSFKRIFEDGEQSLGLCFNGALEIICSKDIKIQGIIGPCTSLEKVRLRGEYYAWKMCGLDKSTCLTVFFDLSS 467 (766)
Q Consensus 392 ----~~~~~l~~~l~~~~~~~~~~~~a~l~vr~S~gl~v~~~~G~~~~~~~~~g~~~~~~~~l~~~~~~~s~~~~f~~~~ 467 (766)
+|.+++.+.|++ ++||+|+||||||+|++|++++||++. ++++.|++++++++++|+|+|++++
T Consensus 384 ~~~~~f~~dl~r~l~~-----~~gf~a~mrVR~S~glkv~~~~G~~~~-------~~t~~~~l~~i~~d~s~~v~~~~~~ 451 (751)
T 3eh1_A 384 SQAEKLQKDLKRYLTR-----KIGFEAVMRIRCTKGLSMHTFHGNFFV-------RSTDLLSLANINPDAGFAVQLSIEE 451 (751)
T ss_dssp HHHHHHHHHHHHHHHS-----CCEEEEEEEEEECTTEEEEEEESSSEE-------CSSSEEEEEEECTTCCEEEEEEESS
T ss_pred hHHHHHHHHHHHHHhh-----hhccceEEEEEecCCeEEEEeeCCeEe-------CCCCceEeccCCCCCEEEEEEEEcC
Confidence 788899999985 689999999999999999999999984 5789999999999999999999999
Q ss_pred CCCCCCCCCCCCcEEEEEEEEeecCCCcEEEEEEeeccccccCCCCHHHHHhccChhHHHHHHHHHHHHHhhcCChHHHH
Q 004238 468 SERLNTPGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSLKMEMEEGFDAT 547 (766)
Q Consensus 468 ~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~i~~~~D~~a~~~llak~a~~~~~~~~~~~~~ 547 (766)
.+ .+...+|||+|++||+.+|+|||||||+++++++ ++.++|+++|+||++++|+|+|+.++.++++.|+|
T Consensus 452 ~l------~~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~---~~~~v~~~~DqeA~~~llar~av~~~~~~~l~d~r 522 (751)
T 3eh1_A 452 SL------TDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVS---SLADVYAGVDVQAAICLLANMAVDRSVSSSLSDAR 522 (751)
T ss_dssp CC------CSCSEEEEEEEEEEECTTSCEEEEEEEEEEEEEC---SHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CC------CCCCceEEEEEEeeecCCCCEEEEEEEecccccC---CHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 87 3467899999999999999999999999999998 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCC-CCCccCCccccchHHHHHHhccccccCC-CCCChHHHHHHHHHHccCCHHHHHHhhcc
Q 004238 548 RWLDRSLIRLCSKFGDYRKDD-PASFTLNPSFSLFPQFMFNLRRSQFVQV-FNNSPDETAYFRMLLNRENITNAAVMIQP 625 (766)
Q Consensus 548 ~~l~~~l~~~~~~~~~y~~~~-~~s~~lp~~l~~lP~~~~~L~ks~~l~~-~~~s~Der~~~~~~l~~~~~~~~~~~iyP 625 (766)
+||++++++++.+|+.|.++. +++|+||++||+||+||++|+||++|+. ++++||||+|++++++++++.+++.||||
T Consensus 523 ~~l~~~li~il~~Yr~~~~~~~~~~l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP 602 (751)
T 3eh1_A 523 DALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHP 602 (751)
T ss_dssp HHHHHHHHHHHHHHHTTCC-----CCEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhcccCCCccccCcHHHHHHHHHHHHHHccHhhcCCCCCChhHHHHHHHHHhCCCHHHHHhhccc
Confidence 999999999988888777654 3589999999999999999999999995 79999999999999999999999999999
Q ss_pred cceeecc---------CC----CCcccccccccccCCeEEEEeCCcEEEEEECCchh-HHhhc--CCCC----------C
Q 004238 626 SLISYSF---------NS----LPQPALLDVASIAADRILLLDTYFSVVIFHGMTIA-QWRNM--GYQN----------Q 679 (766)
Q Consensus 626 ~L~~~~~---------~~----~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~-~~~~~--g~~~----------~ 679 (766)
+||++|. ++ .|..++||+++|.++||||||+|++++||+|++|+ +|+++ |+.+ .
T Consensus 603 ~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~~~~~~l 682 (751)
T 3eh1_A 603 NLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHL 682 (751)
T ss_dssp EEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCCSSBCCC
T ss_pred eEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcCcccccC
Confidence 9999982 22 24456779999999999999999999999999998 78765 5431 1
Q ss_pred hh-----hhHHHHHhhCcHHHHHHHHhcCCCCcEEEEEeCCCChHHHHHHhhcCCCCcCCcccccCCCcccccCCchHHH
Q 004238 680 PE-----HQAFAQLLRAPHDDAELIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEIAAGSDIIFTDDVSLQV 754 (766)
Q Consensus 680 ~~-----~~~~~~~l~~~~~~~~~i~~~R~p~p~~~~~~~g~s~~r~l~s~L~p~~~~~~~~~~~~~~~~~~t~~~Sy~~ 754 (766)
|+ .+++++ .++.+++.|..+|+++++++|++.+..|.+.|+||++. +.+||.+
T Consensus 683 p~~~t~~s~~vr~-------ii~~lr~~r~~~~~l~vvr~~~~~~~~f~~~LvED~~~---------------~~~SY~~ 740 (751)
T 3eh1_A 683 PELDTLSSERARS-------FITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTE---------------AAFSYYE 740 (751)
T ss_dssp CCCSSHHHHHHHH-------HHHHHHHTSSSCCEEEEEESSSSSHHHHHTTCTTSCBT---------------TBCCHHH
T ss_pred CCCCCHHHHHHHH-------HHHHHHhcCCCcceEEEEeCCCchHHHHHHhCcccCCC---------------CCCCHHH
Confidence 21 223333 44588888988999999999988888889999999952 4599999
Q ss_pred HHHHHHHHHhc
Q 004238 755 FIEHLQRLAVQ 765 (766)
Q Consensus 755 f~~~L~~~i~~ 765 (766)
||+|||++|.+
T Consensus 741 fL~~~h~~i~~ 751 (751)
T 3eh1_A 741 FLLHVQQQICK 751 (751)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 4
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=9.6e-134 Score=1185.95 Aligned_cols=670 Identities=19% Similarity=0.270 Sum_probs=589.0
Q ss_pred CcCCCCeeEeeccccCCCHHHhhhCCCceeEEEccCCCCC----CCCCC---CCCCcccCCCCceecCceeEEcCCceEE
Q 004238 8 DPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHP----DIPTL---PYAPLRCKTCTAALNAFARVDFTAKIWI 80 (766)
Q Consensus 8 ~~~~~~~vR~t~~~~P~t~~~~~~~~iPlg~~v~P~~~~~----~ip~~---~~~p~RC~~C~ayiNp~~~~~~~~~~W~ 80 (766)
.|++|+|||+|||+||.|++++++++||||++|+||++.. ++|++ +++|+||++|||||||||+|+++|++|+
T Consensus 43 gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~ 122 (770)
T 3efo_B 43 GNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQ 122 (770)
T ss_dssp SSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEE
T ss_pred CCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEE
Confidence 3999999999999999999999999999999999999763 25665 5689999999999999999999999999
Q ss_pred ecCCCCCCCCCccccc-CC------CCCCCccccCCCceEEEEecCCCCCCCCCCCCCCCCcEEEEEEEcccchHH---H
Q 004238 81 CPFCYQRNHFPPHYAA-IS------ETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEE---L 150 (766)
Q Consensus 81 C~~C~~~N~~p~~y~~-~~------~~~~~pEL~p~~~tvey~~~~~~~~~~~~~~~~~~~p~~vFvID~s~~~~~---l 150 (766)
||||+..|++|++|++ ++ +.++|||| .++||||++|.||+.. .++| .||+|+||||+|..+++ +
T Consensus 123 Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL--~~~tvEf~ap~eY~~~-~~~p---~pp~y~FvIDvs~~av~sg~l 196 (770)
T 3efo_B 123 CGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPEL--SLGSYEYVATLDYCRK-SKPP---NPPAFIFMIDVSYSNIKNGLV 196 (770)
T ss_dssp CTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHH--HCSEEEEECCGGGSGG-GSCC---CCCEEEEEEECSHHHHHTTHH
T ss_pred eccccccCCCchHhhccccccccccccccCccc--ccCceeeecCHHHhcc-CCCC---CCcEEEEEEEcchhhccchHH
Confidence 9999999999999975 33 23589999 7899999999999842 1566 99999999999999874 9
Q ss_pred HHHHHHHHHHhccCCCC-------cEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhhccccCcccccCCC
Q 004238 151 GYARSELKRAIGLLPDN-------AMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQLGLSASGRRAAGGY 223 (766)
Q Consensus 151 ~~~~~~l~~~l~~lp~~-------~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l~~~d~~~~~~~g~ 223 (766)
++++++|+++|+.||++ ++|||||||+.||||++++.. ++ ++|++++|.+
T Consensus 197 ~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~---------------~q-~q~~vv~d~~------- 253 (770)
T 3efo_B 197 KLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNL---------------AQ-PQMMVVTDVG------- 253 (770)
T ss_dssp HHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTC---------------SS-CEEEEECCTT-------
T ss_pred HHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcc---------------cC-ceEEEecccc-------
Confidence 99999999999999975 899999999999999998654 34 4778787653
Q ss_pred cccCCCCCCCCCCc-ccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhccCCCCccEEEEEeC
Q 004238 224 QKAAVPNAFPNSGV-SRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVG 302 (766)
Q Consensus 224 ~~~~~~~~~~~~p~-~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~gGrIi~f~s 302 (766)
|+|+|+ ++||+|++||++.|+++|++|+++ | +..+...+|+|+||++|..+++. .+.||||++|++
T Consensus 254 --------d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~-~--~~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~~F~s 320 (770)
T 3efo_B 254 --------EVFVPLLDGFLVNYQESQSVIHNLLDQIPDM-F--ADSNENETVFAPVIQAGMEALKA--ADCPGKLFIFHS 320 (770)
T ss_dssp --------SCCCCCSSSSSBCTTTTHHHHHHHHHHHHHH-H--HTCCCCCCCCHHHHHHHHHHHHH--HTCCEEEEEEEC
T ss_pred --------cccCCCccceeeeHHHHHHHHHHHHHhhHhh-c--cCCCCCcchHHHHHHHHHHHhcc--CCCCcEEEEEec
Confidence 378884 899999999999999999999875 3 44445678999999999999973 258999999999
Q ss_pred CCCC-CCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhhcccce
Q 004238 303 GPCT-EGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVEKTGGL 381 (766)
Q Consensus 303 g~pt-~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~ 381 (766)
|.|+ .|||+|+.+++++.+|++ ++ +++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.
T Consensus 321 ~lP~t~GpG~l~~r~~~~~~~t~----ke-~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~ 395 (770)
T 3efo_B 321 SLPTAEAPGKLKNRDDKKLVNTD----KE-KILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGT 395 (770)
T ss_dssp SCCCSSSTTCCCCCCCCCCSSCS----CG-GGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCC
T ss_pred CCCCcCCCccccccccccccCCc----ch-hhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCce
Confidence 9555 999999999999998873 44 57999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCchhhHHHHHHHHhhccccccceeeeEEEEEecCCceEEEEEcCcccccccccCCCccceeeecCCCCceEEE
Q 004238 382 VVLAESFGHSVFKDSFKRIFEDGEQSLGLCFNGALEIICSKDIKIQGIIGPCTSLEKVRLRGEYYAWKMCGLDKSTCLTV 461 (766)
Q Consensus 382 v~~~~~f~~~~~~~~l~~~l~~~~~~~~~~~~a~l~vr~S~gl~v~~~~G~~~~~~~~~g~~~~~~~~l~~~~~~~s~~~ 461 (766)
+++|++|+.+.+.+.|.+.|.+... +++||+|+||||||+|++|++++||++ .++++.|++++++++++|+|
T Consensus 396 v~~y~~F~~~~~~~~f~~dl~~~l~-~~~gf~a~mrVR~S~gl~v~~~~G~~~-------~~~t~~~~l~~~~~d~s~~v 467 (770)
T 3efo_B 396 LYKYNNFQMHLDRQQFLNDLRNDIE-KKIGFDAIMRVRTSTGFRATDFFGGIL-------MNNTTDVEMAAIDCDKAVTV 467 (770)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHH-SCEEEEEEEEEEECTTEEEEEEESSCB-------CSSSSCEEEEEEESSCCEEE
T ss_pred EEEecCCcchhHHHHHHHHHHHhhh-hceeeeEEEEEEecCCeEEEEeECCee-------CCCCCceEecccCcCceEEE
Confidence 9999999987766666555554322 579999999999999999999999997 46789999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCcEEEEEEEEeecCCCcEEEEEEeeccccccCCCCHHHHHhccChhHHHHHHHHHHHHHhhcC
Q 004238 462 FFDLSSSERLNTPGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSLKMEME 541 (766)
Q Consensus 462 ~f~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~i~~~~D~~a~~~llak~a~~~~~~~ 541 (766)
+|++++.+ .+...+|||+|++||+.+|+|||||||+++++++ ++.++|+++|+||++++|+|+|+.++.++
T Consensus 468 ~f~~~~~l------~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~---~~~~v~~~~Dqea~~~llar~av~~~~~~ 538 (770)
T 3efo_B 468 EFKHDDKL------SEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSS---QLADLYKSCETDALINFFAKSAFKAVLHQ 538 (770)
T ss_dssp EEEESSCC------BTTTBEEEEEEEEEECTTCCEEEEEEEEEEEEES---CHHHHHHTBCHHHHHHHHHHHHHHHTTTS
T ss_pred EEEecCCC------CCCCcEEEEEEEEEEcCCCCEEEEEEEechhhcc---cHHHHHHhcCHHHHHHHHHHHHHHHhccC
Confidence 99999987 3567899999999999999999999999999998 78999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhcccccCC-----CCCccCCccccchHHHHHHhccccccCC-CCCChHHHHHHHHHHccCC
Q 004238 542 EGFDATRWLDRSLIRLCSKFGDYRKDD-----PASFTLNPSFSLFPQFMFNLRRSQFVQV-FNNSPDETAYFRMLLNREN 615 (766)
Q Consensus 542 ~~~~~~~~l~~~l~~~~~~~~~y~~~~-----~~s~~lp~~l~~lP~~~~~L~ks~~l~~-~~~s~Der~~~~~~l~~~~ 615 (766)
++.++|+.|.++++++ |+.|||++ +++|+||++||+||+|||+|+||++|++ ++++||||+|+|+++++++
T Consensus 539 ~l~~~r~~L~~~~~~~---l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~ 615 (770)
T 3efo_B 539 PLKVIREILVNQTAHM---LACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMG 615 (770)
T ss_dssp CHHHHHHHHHHHHHHH---HHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSCSSSSCHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhhcCCCCCCccHHHHHHHHHHCCC
Confidence 8888888888887777 88898875 3469999999999999999999999997 7999999999999999999
Q ss_pred HHHHHHhhcccceeecc-----CCCCcccccccccccCCeEEEEeCCcEEEEEECCchhHHhhc---CCCC---------
Q 004238 616 ITNAAVMIQPSLISYSF-----NSLPQPALLDVASIAADRILLLDTYFSVVIFHGMTIAQWRNM---GYQN--------- 678 (766)
Q Consensus 616 ~~~~~~~iyP~L~~~~~-----~~~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~~~~~~---g~~~--------- 678 (766)
+.+++.||||+||++|. +..|++++||+++|.++||||||+|++++||+|++|++|+.. |..+
T Consensus 616 ~~~~l~~iyP~L~~~h~l~~~~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~ 695 (770)
T 3efo_B 616 VADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMT 695 (770)
T ss_dssp HHHHHHHHSCEEEECTTCCSSSCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCC
T ss_pred HHHHHHhhccceEEEeccccccccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCCCchhhcCcccc
Confidence 99999999999999983 236899999999999999999999999999999999976532 4321
Q ss_pred -Ch-----hhhHHHHHhhCcHHHHHHHHhcCCCCcEEEEEeCCCChHHHHHHhhcCCCCcCCcccccCCCcccccCCchH
Q 004238 679 -QP-----EHQAFAQLLRAPHDDAELIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEIAAGSDIIFTDDVSL 752 (766)
Q Consensus 679 -~~-----~~~~~~~~l~~~~~~~~~i~~~R~p~p~~~~~~~g~s~~r~l~s~L~p~~~~~~~~~~~~~~~~~~t~~~Sy 752 (766)
.| ..++++ ..++.+++.|..++++++++||++.+..|.+.|+||++. .+.+||
T Consensus 696 ~lp~~~~~~s~~vr-------~ii~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~~~--------------~~~~SY 754 (770)
T 3efo_B 696 LLPEVGNPYSQQLR-------MIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGL--------------YGGSSY 754 (770)
T ss_dssp SCCCCCSSHHHHHH-------HHHHHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSCC-----------------CCCH
T ss_pred cCCCCCCHHHHHHH-------HHHHHHHHhCCCCccEEEEeCCCChHHHHHHhCcccCCC--------------CCCCCH
Confidence 11 122333 345588889988999999999988888899999999951 145899
Q ss_pred HHHHHHHHHHHhc
Q 004238 753 QVFIEHLQRLAVQ 765 (766)
Q Consensus 753 ~~f~~~L~~~i~~ 765 (766)
.+||+||||+|++
T Consensus 755 ~dfL~~lh~~i~~ 767 (770)
T 3efo_B 755 VDFLCCVHKEICQ 767 (770)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999986
No 5
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=9.8e-133 Score=1176.77 Aligned_cols=673 Identities=21% Similarity=0.279 Sum_probs=587.6
Q ss_pred cCCCCeeEeeccccCCCHHHhhhCCCceeEEEccCCCCC----CCCCCC---CCCcccCCCCceecCceeEEcCCceEEe
Q 004238 9 PEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHP----DIPTLP---YAPLRCKTCTAALNAFARVDFTAKIWIC 81 (766)
Q Consensus 9 ~~~~~~vR~t~~~~P~t~~~~~~~~iPlg~~v~P~~~~~----~ip~~~---~~p~RC~~C~ayiNp~~~~~~~~~~W~C 81 (766)
|++|+|||+|||+||.|++++++++||||++|+||++.. ++|+++ ++|+||++|||||||||+|+++|++|+|
T Consensus 40 n~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~C 119 (766)
T 3eh2_A 40 NASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQC 119 (766)
T ss_dssp SCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEEC
T ss_pred CCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEEe
Confidence 999999999999999999999999999999999999763 356664 5899999999999999999999999999
Q ss_pred cCCCCCCCCCccccc-CC------CCCCCccccCCCceEEEEecCCCCCCCCCCCCCCCCcEEEEEEEcccchHH---HH
Q 004238 82 PFCYQRNHFPPHYAA-IS------ETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEE---LG 151 (766)
Q Consensus 82 ~~C~~~N~~p~~y~~-~~------~~~~~pEL~p~~~tvey~~~~~~~~~~~~~~~~~~~p~~vFvID~s~~~~~---l~ 151 (766)
|||+..|++|++|++ ++ +.++|||| ..++|||.+|.||+... ++| .||+|+||||+|.++++ ++
T Consensus 120 n~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL--~~~~vef~a~~eY~~~~-~~p---~pp~y~FvIDvs~~av~sg~l~ 193 (766)
T 3eh2_A 120 CFCSCINDVPPQYFQHLDHTGKRVDAYDRPEL--SLGSYEFLATVDYCKNN-KFP---SPPAFIFMIDVSYNAIRTGLVR 193 (766)
T ss_dssp TTTCCEEECCTTTTGGGGGSSSCCCCSCCHHH--HCSEEEEECCGGGSGGG-SCC---CCCEEEEEEECSHHHHHTTHHH
T ss_pred ccccccCCCCHHHhccccccccccccccCccc--ccCceeeecCHhhccCC-CCC---CCCEEEEEEECchhhccchHHH
Confidence 999999999999975 22 35689999 78999999999998632 466 89999999999999874 89
Q ss_pred HHHHHHHHHhccCCCC-------cEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhhccccCcccccCCCc
Q 004238 152 YARSELKRAIGLLPDN-------AMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQLGLSASGRRAAGGYQ 224 (766)
Q Consensus 152 ~~~~~l~~~l~~lp~~-------~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l~~~d~~~~~~~g~~ 224 (766)
+++++|+++|+.||++ ++|||||||+.||||+++++. ++ ++|++++|.+
T Consensus 194 ~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~---------------~~-~q~~vv~dl~-------- 249 (766)
T 3eh2_A 194 LLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSL---------------AQ-PQMMVVSDVA-------- 249 (766)
T ss_dssp HHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTC---------------SS-CEEEEECCTT--------
T ss_pred HHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCC---------------CC-ceEEEecChh--------
Confidence 9999999999999975 899999999999999998653 23 4678787653
Q ss_pred ccCCCCCCCCCCc-ccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhccCCCCccEEEEEeCC
Q 004238 225 KAAVPNAFPNSGV-SRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGG 303 (766)
Q Consensus 225 ~~~~~~~~~~~p~-~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~gGrIi~f~sg 303 (766)
|+++|+ ++||+|++||++.|+++|++|+++ +++.....+|+|+||++|..+++. .+.||||++|++|
T Consensus 250 -------d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~---~~~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~~F~s~ 317 (766)
T 3eh2_A 250 -------DMFVPLLDGFLVNVNESRAVITSLLDQIPEM---FADTRETETVFVPVIQAGMEALKA--AECAGKLFLFHTS 317 (766)
T ss_dssp -------TCCCCCCTTSSBCTTTTHHHHHHHHHHHHHH---HTTCCCCCCCSHHHHHHHHHHHHH--TTCCEEEEEEECS
T ss_pred -------hhccccccceeEeHHHHHHHHHHHHHhhhhh---ccCCCCCcchHHHHHHHHHHHhcc--CCCCcEEEEEecC
Confidence 478884 899999999999999999999985 344555678999999999999973 3689999999999
Q ss_pred CCC-CCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhhcccceE
Q 004238 304 PCT-EGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVEKTGGLV 382 (766)
Q Consensus 304 ~pt-~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v 382 (766)
+|+ .|||+|+.+++++.+|++ ++ +++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+
T Consensus 318 lP~t~GpG~l~~r~~~~~~~sd----ke-~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 392 (766)
T 3eh2_A 318 LPIAEAPGKLKNRDDRKLINTD----KE-KTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSV 392 (766)
T ss_dssp CCCSSSTTCCCCCCCGGGTTST----TG-GGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred CCCcCCCcccccccccccCCCc----ch-hhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceE
Confidence 665 899999999999988863 44 479999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCchhhHHHHHHHHhhccccccceeeeEEEEEecCCceEEEEEcCcccccccccCCCccceeeecCCCCceEEEE
Q 004238 383 VLAESFGHSVFKDSFKRIFEDGEQSLGLCFNGALEIICSKDIKIQGIIGPCTSLEKVRLRGEYYAWKMCGLDKSTCLTVF 462 (766)
Q Consensus 383 ~~~~~f~~~~~~~~l~~~l~~~~~~~~~~~~a~l~vr~S~gl~v~~~~G~~~~~~~~~g~~~~~~~~l~~~~~~~s~~~~ 462 (766)
++|++|+.+.+.+.|.+.|.+... +++||+|+||||||+|++|++++||++. +++++|+++++++++||+|+
T Consensus 393 ~~y~~F~~~~d~~~f~~dl~~~l~-~~~gf~a~mrVR~S~glkv~~~~G~~~~-------~~t~~~~l~~i~~d~s~~v~ 464 (766)
T 3eh2_A 393 YKYASFQVENDQERFLSDLRRDVQ-KVVGFDAVMRVRTSTGIRAVDFFGAFYM-------SNTTDVELAGLDGDKTVTVE 464 (766)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHH-SCEEEEEEEEEEECTTEEEEEEEESCBC-------SSSSCEEEEEEETTCCEEEE
T ss_pred EEeCCCcchhHHHHHHHHHHHHhh-hcceeeEEEEEEecCCeEEEEeECCeec-------CCCCceeeccCCCCceEEEE
Confidence 999999987755444444433221 4799999999999999999999999973 57899999999999999999
Q ss_pred EEecCCCCCCCCCCCCCcEEEEEEEEeecCCCcEEEEEEeeccccccCCCCHHHHHhccChhHHHHHHHHHHHHHhhcCC
Q 004238 463 FDLSSSERLNTPGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSLKMEMEE 542 (766)
Q Consensus 463 f~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~i~~~~D~~a~~~llak~a~~~~~~~~ 542 (766)
|++++.+ .+...+|||+|++||+.+|+|||||||+++++++ ++.++|+++|+||++++|+|+|+.++.+++
T Consensus 465 f~~~~~l------~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~---~~~~v~~~~Dqea~~~llar~av~~~~~~~ 535 (766)
T 3eh2_A 465 FKHDDRL------NEESGALLQCALLYTSCAGQRRLRIHNLALNCCT---QLADLYRNCETDTLINYMAKFAYRGVLNSP 535 (766)
T ss_dssp EEESSCC------CTTTCEEEEEEEEEECTTSCEEEEEEEEEEEEES---SHHHHHHTBCHHHHHHHHHHHHHHHTTTSC
T ss_pred EEecCCC------CCCCcEEEEEEEEeEcCCCCEEEEEEEEeeEecC---CHHHHHHhcCHHHHHHHHHHHHHHHhhhCC
Confidence 9999987 3578899999999999999999999999999998 789999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccCC-----CCCccCCccccchHHHHHHhccccccCC-CCCChHHHHHHHHHHccCCH
Q 004238 543 GFDATRWLDRSLIRLCSKFGDYRKDD-----PASFTLNPSFSLFPQFMFNLRRSQFVQV-FNNSPDETAYFRMLLNRENI 616 (766)
Q Consensus 543 ~~~~~~~l~~~l~~~~~~~~~y~~~~-----~~s~~lp~~l~~lP~~~~~L~ks~~l~~-~~~s~Der~~~~~~l~~~~~ 616 (766)
+.++|+.|.++++++ |+.|||++ +++|+||++||+||+|||+|+||++|++ ++++||||+|+|++++++++
T Consensus 536 ~~~~R~~l~~~~~~~---l~~Yrk~~~~~~s~~ql~lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~~ 612 (766)
T 3eh2_A 536 VKAVRDTLITQCAQI---LACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDV 612 (766)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHC------CCCCCCGGGTTHHHHHHHHHTSTTTSCCTTCCHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHH---HHHHHhhccCCCCccceecCHHHHHHHHHHHHHHccHhhcCCCCCCccHHHHHHHHHHCCCH
Confidence 999999999988888 88888874 2469999999999999999999999997 68999999999999999999
Q ss_pred HHHHHhhcccceeec---cC--CCCcccccccccccCCeEEEEeCCcEEEEEECCchh-HHhhc--CCCC----------
Q 004238 617 TNAAVMIQPSLISYS---FN--SLPQPALLDVASIAADRILLLDTYFSVVIFHGMTIA-QWRNM--GYQN---------- 678 (766)
Q Consensus 617 ~~~~~~iyP~L~~~~---~~--~~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~-~~~~~--g~~~---------- 678 (766)
.+++.||||+||++| .+ ..|++++||+++|.++||||||+|++++||+|++|+ +|+++ |+.+
T Consensus 613 ~~~l~~iyP~L~~~h~~~~~~~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~ 692 (766)
T 3eh2_A 613 TETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSV 692 (766)
T ss_dssp HHHHHHHSCEEEECSSCCCSCC--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCS
T ss_pred HHHHHHHhheEEEeecCCcccccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHHHHcCCCchhhcCccccc
Confidence 999999999999998 23 268899999999999999999999999999999998 45554 5432
Q ss_pred ChhhhH-HHHHhhCcHHHHHHHHhcCCCCcEEEEEeCCCChHHHHHHhhcCCCCcCCcccccCCCcccccCCchHHHHHH
Q 004238 679 QPEHQA-FAQLLRAPHDDAELIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEIAAGSDIIFTDDVSLQVFIE 757 (766)
Q Consensus 679 ~~~~~~-~~~~l~~~~~~~~~i~~~R~p~p~~~~~~~g~s~~r~l~s~L~p~~~~~~~~~~~~~~~~~~t~~~Sy~~f~~ 757 (766)
.|+.+. +. +..+..++.+++.|..++++++++||++.+.+|.+.|+||++. .+.+||.+||+
T Consensus 693 lp~~~~~~s---~~vr~ii~~lr~~~~~~~~l~ivr~~~~~~~~f~~~LvED~~~--------------~~~~SY~dfL~ 755 (766)
T 3eh2_A 693 LPVLDNPLS---KKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSL--------------SGGASYVDFLC 755 (766)
T ss_dssp CCCCSSHHH---HHHHHHHHHHHTTSSSCCEEEEEESSSSTHHHHHTTCTTSCCT--------------TTCCCHHHHHH
T ss_pred CCCCCCHHH---HHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHHHhCcccCCC--------------CCCCCHHHHHH
Confidence 121110 11 1123455688889988999999999987778888999999852 12599999999
Q ss_pred HHHHHHhc
Q 004238 758 HLQRLAVQ 765 (766)
Q Consensus 758 ~L~~~i~~ 765 (766)
||||+|++
T Consensus 756 ~lh~~i~~ 763 (766)
T 3eh2_A 756 HMHKEIRQ 763 (766)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999976
No 6
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=4.5e-131 Score=1173.75 Aligned_cols=671 Identities=17% Similarity=0.251 Sum_probs=577.1
Q ss_pred CcCCCCeeEeeccccCCCHHHhhhCCCceeEEEccCCCC----CCCCCCCCC-CcccCCCCceecCceeEEcCCceEEec
Q 004238 8 DPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSH----PDIPTLPYA-PLRCKTCTAALNAFARVDFTAKIWICP 82 (766)
Q Consensus 8 ~~~~~~~vR~t~~~~P~t~~~~~~~~iPlg~~v~P~~~~----~~ip~~~~~-p~RC~~C~ayiNp~~~~~~~~~~W~C~ 82 (766)
.||+++|||+|||+||.+++++++++|||||+|+||++. +++|+++.. |+||++|+|||||||+|+++|++|+||
T Consensus 175 gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~g~~W~Cn 254 (926)
T 1m2v_B 175 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 254 (926)
T ss_dssp SSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 389999999999999999999999999999999999975 357877664 999999999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCC------CCccccCCCceEEEEecCCCCCCCCCCCCCCCCcEEEEEEEcccchHH---HHHH
Q 004238 83 FCYQRNHFPPHYAAISETN------LPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEE---LGYA 153 (766)
Q Consensus 83 ~C~~~N~~p~~y~~~~~~~------~~pEL~p~~~tvey~~~~~~~~~~~~~~~~~~~p~~vFvID~s~~~~~---l~~~ 153 (766)
||++.|++|++|. ++..+ +|||| +++||||++|++|+. |+| .||+|+||||+|.++++ ++++
T Consensus 255 fC~~~N~~P~~Y~-~~~~~~~~d~~~RpEL--~~~tvEyi~p~ey~~---r~p---~ppvyvFvIDvS~~av~~g~l~~l 325 (926)
T 1m2v_B 255 FCRLANDVPMQMD-QSDPNDPKSRYDRNEI--KCAVMEYMAPKEYTL---RQP---PPATYCFLIDVSQSSIKSGLLATT 325 (926)
T ss_dssp TTCCEEECCGGGT-TTSTTCGGGGGGSHHH--HCSEEEEECCGGGCS---SCC---CCCBEEEEEECSHHHHHSCHHHHH
T ss_pred CCCCCCCCchhhc-cccccCccccccCccc--cCceEEEEcChhhcc---CCC---CCcEEEEEEECCHHHHhhhHHHHH
Confidence 9999999999998 54443 45999 899999999999987 577 89999999999999987 8899
Q ss_pred HHHHHHHhccCCC---CcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhhccccCcccccCCCcccCCCC
Q 004238 154 RSELKRAIGLLPD---NAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQLGLSASGRRAAGGYQKAAVPN 230 (766)
Q Consensus 154 ~~~l~~~l~~lp~---~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l~~~d~~~~~~~g~~~~~~~~ 230 (766)
+++|+.+|+.||+ +++|||||||+.||||+++.+. .|+++ +.++ ++|++++|.+
T Consensus 326 ~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~-------~g~k~-~~~q-~qmlvvsdl~-------------- 382 (926)
T 1m2v_B 326 INTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDS-------ENNEE-SADQ-INMMDIADLE-------------- 382 (926)
T ss_dssp HHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC-----------------C-CEEEEECCCS--------------
T ss_pred HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcc-------cCCcc-cccc-hhhccccccc--------------
Confidence 9999999999997 6999999999999999998764 27787 7777 7899998763
Q ss_pred CCCCCCc-ccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhccCCCCccEEEEEeCCCCCCCC
Q 004238 231 AFPNSGV-SRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGP 309 (766)
Q Consensus 231 ~~~~~p~-~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~gGrIi~f~sg~pt~Gp 309 (766)
|+|+|. ++||+|++||++.|+++|++|+++ +++++++.||+|+||++|..+|+ ..||||++|++|+||.||
T Consensus 383 -d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~---~~~~~~~~~~~G~AL~aA~~lL~----~~GGrI~~F~sg~Pt~Gp 454 (926)
T 1m2v_B 383 -EPFLPRPNSMVVSLKACRQNIETLLTKIPQI---FQSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTLPNLGI 454 (926)
T ss_dssp -SCCCSCSSSSSEETTTTHHHHHHHHHHHHHH---TSSCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSCCCSST
T ss_pred -cccCCCcccccccHHHHHHHHHHHHHhhhhh---hcCCCCCCccHHHHHHHHHHHHH----hhCCEEEEEecCCCCCCC
Confidence 367774 899999999999999999999984 57788999999999999999998 789999999999999999
Q ss_pred cccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhhcccceEEEeCCCC
Q 004238 310 GTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFG 389 (766)
Q Consensus 310 G~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~ 389 (766)
|+|+.+++++ |.+++|+++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+
T Consensus 455 G~l~~re~~~----~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~ 530 (926)
T 1m2v_B 455 GKLQRRNESG----VVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFS 530 (926)
T ss_dssp TCCCCCCC--------CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCC
T ss_pred Cccccccccc----ccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCc
Confidence 9999998763 668888876799999999999999999999999999999999999999999999999999999999
Q ss_pred chhh------HHHHHHHHhhccccccceeeeEEEEEecCCceEEEEEcCcccccccccCCCccceeeecCCCCceEEEEE
Q 004238 390 HSVF------KDSFKRIFEDGEQSLGLCFNGALEIICSKDIKIQGIIGPCTSLEKVRLRGEYYAWKMCGLDKSTCLTVFF 463 (766)
Q Consensus 390 ~~~~------~~~l~~~l~~~~~~~~~~~~a~l~vr~S~gl~v~~~~G~~~~~~~~~g~~~~~~~~l~~~~~~~s~~~~f 463 (766)
.++| ..++.+.++ +++||+|+||||||+||+|++++||++. ++++.|+++++++++||+|+|
T Consensus 531 ~~~~~d~~kf~~dl~~~Lt-----~~~gf~a~mrVR~S~glkv~~~~G~~~~-------~~s~~~~l~~l~~d~s~av~f 598 (926)
T 1m2v_B 531 GKNPNDIVKFSTEFAKHIS-----MDFCMETVMRARGSTGLRMSRFYGHFFN-------RSSDLCAFSTMPRDQSYLFEV 598 (926)
T ss_dssp TTSHHHHHHHHHHHHHHHH-----SCCEEEEEEEEEECTTEEEEEEESSSBC-------SSTTEEEEEEECSSCCEEEEE
T ss_pred chhhhHHHHHHHHHHHHhh-----hhhceeEEEEEEeCCCcEEEEeecCccc-------cCcCceEeeccCCCCEEEEEE
Confidence 8754 345555665 3689999999999999999999999985 367899999999999999999
Q ss_pred EecCCCCCCCCCCCCCcEEEEEEEEeecCCCcEEEEEEeeccccccCCCCHHHHHhccChhHHHHHHHHHHHHHhhcCCh
Q 004238 464 DLSSSERLNTPGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSLKMEMEEG 543 (766)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~i~~~~D~~a~~~llak~a~~~~~~~~~ 543 (766)
++++.+ ....+|||||++||+.+|+|||||||+++++++ ++.++|+++|+||++++|+|+|+.++.++++
T Consensus 599 ~~~~~l-------~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~---~l~~v~~s~Dqea~~~llar~av~~~~~~~~ 668 (926)
T 1m2v_B 599 NVDESI-------MADYCYVQVAVLLSLNNSQRRIRIITLAMPTTE---SLAEVYASADQLAIASFYNSKAVEKALNSSL 668 (926)
T ss_dssp EECSBC-------CSSEEEEEEEEEEEETTTEEEEEEEEEEEEEES---CHHHHHHTBCHHHHHHHHHHHHHHHHHHSCS
T ss_pred EeccCC-------CCCcEEEEEEEEEEcCCCCEEEEEEeecccccC---CHHHHHHhcCHHHHHHHHHHHHHHHhhcCCH
Confidence 999976 257899999999999999999999999999998 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCC-------CccCCccccchHHHHHHhccccccCCCCCCh-HHHHHHHHHHccCC
Q 004238 544 FDATRWLDRSLIRLCSKFGDYRKDDPA-------SFTLNPSFSLFPQFMFNLRRSQFVQVFNNSP-DETAYFRMLLNREN 615 (766)
Q Consensus 544 ~~~~~~l~~~l~~~~~~~~~y~~~~~~-------s~~lp~~l~~lP~~~~~L~ks~~l~~~~~s~-Der~~~~~~l~~~~ 615 (766)
.|+|+||+++|+++ ++.|||++++ +|+||++||+||+|||+|+||++|+ ++.+| |||+|+++++++++
T Consensus 669 ~d~r~~L~~~li~i---l~~Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~-~~~~p~Dera~~~~~l~~~~ 744 (926)
T 1m2v_B 669 DDARVLINKSVQDI---LATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASALNNLESLP 744 (926)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH---HHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhhC-CCCCCccHHHHHHHHHHcCC
Confidence 99999999999999 6778887652 5999999999999999999999999 66666 99999999999999
Q ss_pred HHHHHHhhcccceeeccC----C---------------CCcccccccccccCCeEEEEeCCcEEEEEECCchh-HHhhc-
Q 004238 616 ITNAAVMIQPSLISYSFN----S---------------LPQPALLDVASIAADRILLLDTYFSVVIFHGMTIA-QWRNM- 674 (766)
Q Consensus 616 ~~~~~~~iyP~L~~~~~~----~---------------~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~-~~~~~- 674 (766)
+.+++.||||+||+||.. + .|++++||++.|+++|+||||+|..+++|+|++++ +|+++
T Consensus 745 ~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p~ll~dl 824 (926)
T 1m2v_B 745 LKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDV 824 (926)
T ss_dssp HHHHHHHHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEECTTCCSGGGC--
T ss_pred HHHHHHhccCeEEEeccCcccccccccccccccccccccCCcccCcHHHhccCCEEEEECCCEEEEEecCCCCHHHHHHH
Confidence 999999999999999852 1 27889999999999999999999999999999998 77765
Q ss_pred -CCCCC----------hhh-hHHHHHhhCcHHHHHHHHhcCC--CCcEEEEEeCCCC-------------hHH-HHHHhh
Q 004238 675 -GYQNQ----------PEH-QAFAQLLRAPHDDAELIIRDRF--PVPRLVVCDQHGS-------------QAR-FLLAKL 726 (766)
Q Consensus 675 -g~~~~----------~~~-~~~~~~l~~~~~~~~~i~~~R~--p~p~~~~~~~g~s-------------~~r-~l~s~L 726 (766)
|...- |+. +. .+=+..+..++++++.|. .+|++++++++.. ..+ +|.+.|
T Consensus 825 Fg~~~~~~i~~~~~~lp~l~~~--~~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~L 902 (926)
T 1m2v_B 825 FGTQDIFDIPIGKQEIPVVENS--EFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTL 902 (926)
T ss_dssp -------------------------CHHHHHHHHHHTTCCSSCCCCCEEEEEC------------CCHHHHHHHHHHHTC
T ss_pred hCCCchhhcCcccccCccCCCC--hHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhC
Confidence 43211 111 00 000012234557777775 5788999987543 123 567889
Q ss_pred cCCCCcCCcccccCCCcccccCCchHHHHHHHHHHHHhc
Q 004238 727 NPSATYNNANEIAAGSDIIFTDDVSLQVFIEHLQRLAVQ 765 (766)
Q Consensus 727 ~p~~~~~~~~~~~~~~~~~~t~~~Sy~~f~~~L~~~i~~ 765 (766)
+||++. +.+||.+||++||++|++
T Consensus 903 vED~~~---------------~~~SY~dfL~~lh~~i~~ 926 (926)
T 1m2v_B 903 VEDKIL---------------NNESYREFLQIMKARISK 926 (926)
T ss_dssp TTSSCT---------------TCCCHHHHHHHHHHHHCC
T ss_pred eecCCC---------------CCCCHHHHHHHHHHHhhC
Confidence 999852 469999999999999974
No 7
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=1.3e-130 Score=1166.63 Aligned_cols=666 Identities=17% Similarity=0.245 Sum_probs=565.6
Q ss_pred CcCCCCeeEeeccccCCCHHHhhhCCCceeEEEccCCCC----CCCCCCCCC-CcccCCCCceecCceeEEcCCceEEec
Q 004238 8 DPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSH----PDIPTLPYA-PLRCKTCTAALNAFARVDFTAKIWICP 82 (766)
Q Consensus 8 ~~~~~~~vR~t~~~~P~t~~~~~~~~iPlg~~v~P~~~~----~~ip~~~~~-p~RC~~C~ayiNp~~~~~~~~~~W~C~ 82 (766)
.||+++|||+|||+||.+++++++++|||||+|+||++. +++|+++++ |+||++|+|||||||+|+++|++|+||
T Consensus 59 ~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~~~g~~W~C~ 138 (810)
T 1pcx_A 59 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 138 (810)
T ss_dssp GSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 389999999999999999999999999999999999975 357877664 999999999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCC------CCCccccCCCceEEEEecCCCCCCCCCCCCCCCCcEEEEEEEcccchHH---HHHH
Q 004238 83 FCYQRNHFPPHYAAISET------NLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEE---LGYA 153 (766)
Q Consensus 83 ~C~~~N~~p~~y~~~~~~------~~~pEL~p~~~tvey~~~~~~~~~~~~~~~~~~~p~~vFvID~s~~~~~---l~~~ 153 (766)
||++.|++|++|. ++.. .+|||| +++||||++|++|+. ++| .||+|+||||+|.++++ ++++
T Consensus 139 ~C~~~N~~P~~y~-~~~~~~~~d~~~RpEL--~~~tvEy~~p~~y~~---~~p---~pp~yvFvIDvs~~av~~g~l~~~ 209 (810)
T 1pcx_A 139 FCRLANDVPMQMD-QSDPNDPKSRYDRNEI--KCAVMEYMAPKEYTL---RQP---PPATYCFLIDVSQSSIKSGLLATT 209 (810)
T ss_dssp TTCCEEECCGGGG-C-----CCCGGGSHHH--HCSEEEEECCGGGCS---SCC---CCCEEEEEEECSHHHHHHTHHHHH
T ss_pred CCCCcCCCchhhc-cccccCccccccCccc--cCceEEEEcCchhcc---CCC---CCcEEEEEEECChHHHhhhHHHHH
Confidence 9999999999998 4433 356999 899999999999987 567 89999999999999976 7899
Q ss_pred HHHHHHHhccCCC---CcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhhccccCcccccCCCcccCCCC
Q 004238 154 RSELKRAIGLLPD---NAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQLGLSASGRRAAGGYQKAAVPN 230 (766)
Q Consensus 154 ~~~l~~~l~~lp~---~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l~~~d~~~~~~~g~~~~~~~~ 230 (766)
+++|+.+|+.||+ +++|||||||+.||||+++.+. .|++++ .++ ++|++++|.+
T Consensus 210 ~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~-------~g~k~~-~~q-~~mlvv~dl~-------------- 266 (810)
T 1pcx_A 210 INTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDS-------ENNEES-ADQ-INMMDIADLE-------------- 266 (810)
T ss_dssp HHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGG-------GC---------CEEECCCCTT--------------
T ss_pred HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccc-------cCcccc-ccc-hhhccccccc--------------
Confidence 9999999999997 6999999999999999998654 277776 456 7899988753
Q ss_pred CCCCCCc-ccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhccCCCCccEEEEEeCCCCCCCC
Q 004238 231 AFPNSGV-SRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGP 309 (766)
Q Consensus 231 ~~~~~p~-~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~gGrIi~f~sg~pt~Gp 309 (766)
|+++|. ++||+|++||++.|+++|++|+++ +++++++.||+|+||++|..+|+ ..||||++|++|+||.||
T Consensus 267 -d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~---~~~~~~~~~a~G~AL~~A~~lL~----~~GGrI~~F~sg~pt~Gp 338 (810)
T 1pcx_A 267 -EPFLPRPNSMVVSLKACRQNIETLLTKIPQI---FQSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTLPNLGI 338 (810)
T ss_dssp -CC-----TTTSEETTTTHHHHHHHHHHHHHH---TTTCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSCCCSST
T ss_pred -cccCCCcccccccHHHHHHHHHHHHHhhhhh---ccCCCCCCccHHHHHHHHHHHHH----hcCCEEEEEecCCCCCCC
Confidence 356774 899999999999999999999984 57788999999999999999998 789999999999999999
Q ss_pred cccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhhcccceEEEeCCCC
Q 004238 310 GTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFG 389 (766)
Q Consensus 310 G~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~ 389 (766)
|+|+.+++++ |.+++|+++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+
T Consensus 339 G~l~~r~~~~----~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~ 414 (810)
T 1pcx_A 339 GKLQRRNESG----VVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFS 414 (810)
T ss_dssp TCCCC------------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCC
T ss_pred Cccccccccc----ccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCc
Confidence 9999998763 668888877799999999999999999999999999999999999999999999999999999999
Q ss_pred chhh------HHHHHHHHhhccccccceeeeEEEEEecCCceEEEEEcCcccccccccCCCccceeeecCCCCceEEEEE
Q 004238 390 HSVF------KDSFKRIFEDGEQSLGLCFNGALEIICSKDIKIQGIIGPCTSLEKVRLRGEYYAWKMCGLDKSTCLTVFF 463 (766)
Q Consensus 390 ~~~~------~~~l~~~l~~~~~~~~~~~~a~l~vr~S~gl~v~~~~G~~~~~~~~~g~~~~~~~~l~~~~~~~s~~~~f 463 (766)
.++| ..++.+.+++ ++||+|+||||||+|++|++++||++. ++++.|+++++++++||+|+|
T Consensus 415 ~~~~~d~~~f~~dl~~~l~~-----~~gf~a~mrVR~S~gl~v~~~~G~~~~-------~~~~~~~l~~~~~d~s~~v~f 482 (810)
T 1pcx_A 415 GKNPNDIVKFSTEFAKHISM-----DFCMETVMRARGSTGLRMSRFYGHFFN-------RSSDLCAFSTMPRDQSYLFEV 482 (810)
T ss_dssp TTSHHHHHHHHHHHHHHHHC-----CCCEEEEEEEEECTTEEEEEEESSSBC-------SSSSEEEESSCCSSCCEEEEE
T ss_pred chhhHHHHHHHHHHHHHhhh-----hcceeEEEEEEcCCCeEEEEeecCccc-------cCcCceEeecCCCCCEEEEEE
Confidence 8744 4455566653 689999999999999999999999986 367899999999999999999
Q ss_pred EecCCCCCCCCCCCCCcEEEEEEEEeecCCCcEEEEEEeeccccccCCCCHHHHHhccChhHHHHHHHHHHHHHhhcCCh
Q 004238 464 DLSSSERLNTPGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSLKMEMEEG 543 (766)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~i~~~~D~~a~~~llak~a~~~~~~~~~ 543 (766)
++++.+ ....+|||+|++||+.+|+|||||||+++++++ ++.++|+++|+||++++|+|+|+.++.+++.
T Consensus 483 ~~~~~l-------~~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~---~~~~v~~~~Dqea~~~llar~av~~~~~~~~ 552 (810)
T 1pcx_A 483 NVDESI-------MADYCYVQVAVLLSLNNSQRRIRIITLAMPTTE---SLAEVYASADQLAIASFYNSKAVEKALNSSL 552 (810)
T ss_dssp EECSCC-------CSSEEEEEEEEEEECTTSCEEEEEEEEEEEEES---CHHHHHHTBCHHHHHHHHHHHHHHHHHHTCH
T ss_pred EeccCC-------CCCcEEEEEEEEEEcCCCCEEEEEEecCccccC---CHHHHHHhcCHHHHHHHHHHHHHHHhhcCCH
Confidence 999976 257899999999999999999999999999998 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCC-------CCccCCccccchHHHHHHhccccccCCCCCCh-HHHHHHHHHHccCC
Q 004238 544 FDATRWLDRSLIRLCSKFGDYRKDDP-------ASFTLNPSFSLFPQFMFNLRRSQFVQVFNNSP-DETAYFRMLLNREN 615 (766)
Q Consensus 544 ~~~~~~l~~~l~~~~~~~~~y~~~~~-------~s~~lp~~l~~lP~~~~~L~ks~~l~~~~~s~-Der~~~~~~l~~~~ 615 (766)
.|+|+||+++|+++ ++.||++++ ++|+||++||+||+|||+|+||++|+ ++.+| |||+|+++++++++
T Consensus 553 ~d~r~~l~~~li~i---l~~Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~~l~-~~~~p~Der~~~~~~l~~~~ 628 (810)
T 1pcx_A 553 DDARVLINKSVQDI---LATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASALNNLESLP 628 (810)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHCC----CCSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH---HHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhcC-CCCCCccHHHHHHHHHHcCC
Confidence 99999999999999 677888765 26999999999999999999999999 66666 99999999999999
Q ss_pred HHHHHHhhcccceeeccC----C---------------CCcccccccccccCCeEEEEeCCcEEEEEECCchh-HHhhc-
Q 004238 616 ITNAAVMIQPSLISYSFN----S---------------LPQPALLDVASIAADRILLLDTYFSVVIFHGMTIA-QWRNM- 674 (766)
Q Consensus 616 ~~~~~~~iyP~L~~~~~~----~---------------~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~-~~~~~- 674 (766)
+.+++.||||+||+||.. + .|++++||++.|+++|+||||+|..+++|+|++++ +|+++
T Consensus 629 ~~~~~~~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~l~~~l 708 (810)
T 1pcx_A 629 LKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDV 708 (810)
T ss_dssp HHHHHHHHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECSSEEEEEECTTCCHHHHHHH
T ss_pred HHHHHHhccCEEEEeccCcccccccccccccccccccccCCcccCCHHHhCcCCEEEEECCCEEEEEeCCCCCHHHHHHH
Confidence 999999999999999852 1 27789999999999999999999999999999997 67664
Q ss_pred -CCC----------------CChhhhHHHHHhhCcHHHHHHHHhcCC--CCcEEEEEeCCCCh-------------HH-H
Q 004238 675 -GYQ----------------NQPEHQAFAQLLRAPHDDAELIIRDRF--PVPRLVVCDQHGSQ-------------AR-F 721 (766)
Q Consensus 675 -g~~----------------~~~~~~~~~~~l~~~~~~~~~i~~~R~--p~p~~~~~~~g~s~-------------~r-~ 721 (766)
|.. +.+...+++ ..++++++.|. .+|++++++||... .+ +
T Consensus 709 Fg~~~~~~~~~~~~~lp~~~~~~~~~~l~-------~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~ 781 (810)
T 1pcx_A 709 FGTQDIFDIPIGKQEIPVVENSEFNQRVR-------NIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLW 781 (810)
T ss_dssp HSCSCGGGSCCEECCCCCCSSCHHHHHHH-------HHHHHHHCCSSCCCCCEEEEEECCCTTCCCCHHHHHHHHHHHHH
T ss_pred hCCCchhhcCcccccCCcCCCChHHHHHH-------HHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHH
Confidence 442 111122233 34558888875 57889999876431 23 5
Q ss_pred HHHhhcCCCCcCCcccccCCCcccccCCchHHHHHHHHHHHHhc
Q 004238 722 LLAKLNPSATYNNANEIAAGSDIIFTDDVSLQVFIEHLQRLAVQ 765 (766)
Q Consensus 722 l~s~L~p~~~~~~~~~~~~~~~~~~t~~~Sy~~f~~~L~~~i~~ 765 (766)
|.+.|+||++. +.+||.+||++||++|++
T Consensus 782 f~~~LvED~~~---------------~~~SY~~fL~~lh~~i~~ 810 (810)
T 1pcx_A 782 ASSTLVEDKIL---------------NNESYREFLQIMKARISK 810 (810)
T ss_dssp HHTTCTTSCBT---------------TBCCHHHHHHHHHHHTCC
T ss_pred HHHhCeecCCC---------------CCCCHHHHHHHHHHHhhC
Confidence 67889999852 469999999999999874
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.64 E-value=3.1e-17 Score=127.02 Aligned_cols=52 Identities=54% Similarity=1.113 Sum_probs=47.2
Q ss_pred CCCCCcccCC--CCceecCceeEEcCCceEEecCCCCCCCCCcccccCCCCCCC
Q 004238 52 LPYAPLRCKT--CTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLP 103 (766)
Q Consensus 52 ~~~~p~RC~~--C~ayiNp~~~~~~~~~~W~C~~C~~~N~~p~~y~~~~~~~~~ 103 (766)
.+++|+||++ |+|||||||+|+.++++|+|+||++.|++|++|..+++.+++
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~nlP 58 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP 58 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHHSC
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCcccCC
Confidence 4678999999 999999999999999999999999999999999887766554
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.24 E-value=4.3e-08 Score=109.82 Aligned_cols=314 Identities=14% Similarity=0.097 Sum_probs=195.2
Q ss_pred CcEEEEEEEcccchH----HHHHHHHHHHHHhccCCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhh
Q 004238 134 SPVFVFVLDTCMIEE----ELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQ 209 (766)
Q Consensus 134 ~p~~vFvID~s~~~~----~l~~~~~~l~~~l~~lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~ 209 (766)
+.-++||||+|.++. .++.++++++..++.|+++.+||||+|++..+..- ..+. .
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~-p~t~-------------------~- 135 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVY-PTGG-------------------Q- 135 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEE-SSSS-------------------S-
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEe-cCCc-------------------c-
Confidence 456999999999986 38999999999999999999999999998777641 1000 0
Q ss_pred hccccCcccccCCCcccCCCCCCCCCCcccceee-hhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhc
Q 004238 210 LGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLP-ASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGA 288 (766)
Q Consensus 210 l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~-~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~ 288 (766)
+ .+ -...+..+...|+.|... ..+.++.||..|..++..
T Consensus 136 l-------------------------------~~~~~~~~~~l~~~I~~L~~~---------GgT~l~~aL~~A~~~l~~ 175 (464)
T 4fx5_A 136 L-------------------------------LRADYQSRAAAKEAVGRLHAN---------GGTAMGRWLAQAGRIFDT 175 (464)
T ss_dssp C-------------------------------EECSHHHHHHHHHHHHTCCCC---------SCCCHHHHHHHHHHHHTT
T ss_pred c-------------------------------ccCCHHHHHHHHHHHHcCCCC---------CCCcHHHHHHHHHHHHhc
Confidence 0 00 012344466667777542 246899999999999973
Q ss_pred cCCCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCccCh
Q 004238 289 CLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGV 368 (766)
Q Consensus 289 ~~~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l 368 (766)
.++....|+++++|.++.+. ...... +.+....++.|..|.++. ..+-
T Consensus 176 -~~~~~~~IILLTDG~~~~~~----------------------------~~~l~~--~~~a~~~~i~i~tiGiG~-~~d~ 223 (464)
T 4fx5_A 176 -APSAIKHAILLTDGKDESET----------------------------PADLAR--AIQSSIGNFTADCRGIGE-DWEP 223 (464)
T ss_dssp -CTTSEEEEEEEESSCCTTSC----------------------------HHHHHH--HHHHHTTTCEEEEEEESS-SSCH
T ss_pred -CCCCCCEEEEEcCCCCCCCC----------------------------hHHHHH--HHHHhcCCCeEEEEEeCC-ccCH
Confidence 22334678999999766421 000111 122345688888888764 4677
Q ss_pred hcchhhhhcccceEEEeCCCCchhhHHHHHHHHhhccccccceeeeEEEEEecCCceEEEEEc--Ccccc-c--ccc-cC
Q 004238 369 AEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIFEDGEQSLGLCFNGALEIICSKDIKIQGIIG--PCTSL-E--KVR-LR 442 (766)
Q Consensus 369 ~~l~~l~~~TGG~v~~~~~f~~~~~~~~l~~~l~~~~~~~~~~~~a~l~vr~S~gl~v~~~~G--~~~~~-~--~~~-g~ 442 (766)
..|..++..|||..++.++... +.+.+.+++.+.. ....-++.++++++.|+.+..+.. +.... . ... .-
T Consensus 224 ~~L~~IA~~tgG~~~~v~d~~~--L~~~f~~i~~~~~--s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~ 299 (464)
T 4fx5_A 224 KELRKIADALLGTVGIIRDPAT--LAEDFREMTAKSM--GKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDN 299 (464)
T ss_dssp HHHHHHHHHTTCCEEEESSGGG--HHHHHHHHHHHHH--TCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSS
T ss_pred HHHHHHHHhCCCEEEEcCCHHH--HHHHHHHHHHHhh--chheeeeEEEEEeCCCcEEEEEEeecccccccCcccccCCC
Confidence 8899999999999988876543 4455555555432 256789999999999998876532 21110 0 000 01
Q ss_pred CCccceeeecCCCCceEEEEEEecCCCCCCCCCCCCCcEE-EEEEEEeecCCCcEEEEEEeeccccccCCCCHHHHHhcc
Q 004238 443 GEYYAWKMCGLDKSTCLTVFFDLSSSERLNTPGTINPQLY-LQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGF 521 (766)
Q Consensus 443 ~~~~~~~l~~~~~~~s~~~~f~~~~~~~~~~~~~~~~~~~-iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~i~~~~ 521 (766)
+....+.++.+ .+.+=.|.+++.-... ..+...- .+..+.|.++.|++.+.-..+...++. . ...-...
T Consensus 300 ~~~~~v~lG~l-~~e~r~~lv~l~v~~~-----~~g~~~~~~~v~~~y~~~~~~~~~~~~~v~~~~~~---~-~~~~~~~ 369 (464)
T 4fx5_A 300 PLTGDYPTGAW-GAESREYHICVEVEPG-----NIGQEKLAGRVQLVAKDAGGATLLGEGKIRAVWTE---D-TDLSTRI 369 (464)
T ss_dssp TTEEEEEEEEE-SSEEEEEEEEEECCCC-----CTTCEEEEEEEEEEEEETTEEEEEEEEEEEEEECS---C-HHHHSCC
T ss_pred CcEEEEECCcC-CCCeEEEEEEEEcCCC-----CCCceeEEEEEEEEEcCCCccccccccceEEEEEc---c-ccccCCC
Confidence 22456788888 7777677777764432 2244444 799999999888732212233333443 2 2223344
Q ss_pred ChhHHHHH-------HHHHHHHHhhcCChHHHHHHHHHHH
Q 004238 522 DQESAAVV-------MARLTSLKMEMEEGFDATRWLDRSL 554 (766)
Q Consensus 522 D~~a~~~l-------lak~a~~~~~~~~~~~~~~~l~~~l 554 (766)
|+++.-.. ..+.+...+..++...|...|....
T Consensus 370 ~~~V~~~~~~~~~a~~~~~a~~~~~~gd~~~A~~~L~~A~ 409 (464)
T 4fx5_A 370 NGRVAHYTGQAEMAAAIQEGLDAQAAGDLDTATARLGRAM 409 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44433221 1233444555566666666665433
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=6.1e-07 Score=89.89 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=114.7
Q ss_pred CCcEEEEEEEcccchH-------HHHHHHHHHHHHhccCCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhh
Q 004238 133 LSPVFVFVLDTCMIEE-------ELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQ 205 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~-------~l~~~~~~l~~~l~~lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~ 205 (766)
.+..++||||+|.++. .++.+++.+...++.++ +.+||||+|++..+..- .
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~-~-------------------- 67 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQL-P-------------------- 67 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEE-E--------------------
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeC-C--------------------
Confidence 5778999999999975 58999999999999997 67999999997655421 0
Q ss_pred HHhhhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 004238 206 VLEQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGL 285 (766)
Q Consensus 206 l~~~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~l 285 (766)
+ ......+..+|+.|.... .+ ...+.++.||..|...
T Consensus 68 ------~--------------------------------~~~~~~~~~~l~~l~~~~--~~---~g~T~l~~al~~a~~~ 104 (218)
T 3ibs_A 68 ------I--------------------------------TSDYISAKMFLESISPSL--IS---KQGTAIGEAINLATRS 104 (218)
T ss_dssp ------E--------------------------------ESCHHHHHHHHHTCCGGG--CC---SCSCCHHHHHHHHHTT
T ss_pred ------C--------------------------------CCCHHHHHHHHHhcCccc--CC---CCCCcHHHHHHHHHHH
Confidence 0 001123456666665421 11 2357899999999998
Q ss_pred hhccCCCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCC-
Q 004238 286 LGACLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALD- 364 (766)
Q Consensus 286 l~~~~~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~- 364 (766)
+... +.....|+++++|.++.|. ..+.+..+.+.||.|..+.++.+
T Consensus 105 l~~~-~~~~~~ivllTDG~~~~~~--------------------------------~~~~~~~~~~~~i~v~~igig~~~ 151 (218)
T 3ibs_A 105 FTPQ-EGVGRAIIVITDGENHEGG--------------------------------AVEAAKAAAEKGIQVSVLGVGMPE 151 (218)
T ss_dssp SCSC-SSCCEEEEEEECCTTCCSC--------------------------------HHHHHHHHHTTTEEEEEEEESCTT
T ss_pred HhhC-CCCCcEEEEEcCCCCCCCc--------------------------------HHHHHHHHHhcCCEEEEEEecCCC
Confidence 8732 2345688899999876540 13456677788999999988764
Q ss_pred -----------------------ccChhcchhhhhcccceEEEeCC
Q 004238 365 -----------------------QVGVAEMKVAVEKTGGLVVLAES 387 (766)
Q Consensus 365 -----------------------~~~l~~l~~l~~~TGG~v~~~~~ 387 (766)
..+-..|..+|..|||..++..+
T Consensus 152 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 152 GAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp CEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred CCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCC
Confidence 56778899999999999888765
No 11
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.34 E-value=8.4e-06 Score=81.69 Aligned_cols=172 Identities=16% Similarity=0.103 Sum_probs=105.8
Q ss_pred CCcEEEEEEEcccchHH--HHHHHHHHHHHhccC---CCCcEEEEEEECCeEEEEE-cCCCCCcceeEecCCcccchhhH
Q 004238 133 LSPVFVFVLDTCMIEEE--LGYARSELKRAIGLL---PDNAMVGLVTFGTQAHVHE-LGFSDMSKVYVFRGNKEISKDQV 206 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~--l~~~~~~l~~~l~~l---p~~~~VglItf~~~V~~~~-l~~~~~~~~~v~~g~~~~~~~~l 206 (766)
.+.-++||||+|.++.. ++.+++.+...++.+ +++.+||+|+|++.++..- +..
T Consensus 14 ~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~-------------------- 73 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSE-------------------- 73 (223)
T ss_dssp -CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTS--------------------
T ss_pred CceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeecccc--------------------
Confidence 56789999999999743 788888877776544 5578999999998765531 100
Q ss_pred HhhhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHh
Q 004238 207 LEQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLL 286 (766)
Q Consensus 207 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll 286 (766)
+....++.+...|+.|+... ......+.+|.||..|...+
T Consensus 74 ------------------------------------~~~~~~~~~~~~i~~l~~~~----~~~~g~T~~~~aL~~a~~~l 113 (223)
T 1q0p_A 74 ------------------------------------ADSSNADWVTKQLNEINYED----HKLKSGTNTKKALQAVYSMM 113 (223)
T ss_dssp ------------------------------------GGGGCHHHHHHHHHTCCTTS----CSCTTCCCHHHHHHHHHHHH
T ss_pred ------------------------------------CCCCCHHHHHHHHHhccccc----ccCCCCccHHHHHHHHHHHh
Confidence 00111234566777776521 01134678999999999998
Q ss_pred hccCC-------CCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHH------HHHHHHcC
Q 004238 287 GACLP-------GTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGL------AKQLVSQG 353 (766)
Q Consensus 287 ~~~~~-------~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~l------a~~~~~~~ 353 (766)
...-. .....|+++++|.++.|.-. ....+-.+++ +..+.+.|
T Consensus 114 ~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 169 (223)
T 1q0p_A 114 SWPDDVPPEGWNRTRHVIILMTDGLHNMGGDP------------------------ITVIDEIRDLLYIGKDRKNPREDY 169 (223)
T ss_dssp CCTTSSCCTTGGGCEEEEEEEECSCCCSSSCT------------------------HHHHHHHHHHTTCSCBTTBCCGGG
T ss_pred hccccccccccccCCeEEEEECCCCCCCCCCh------------------------HHHHHHHHHHHhhhhhhhhcccCC
Confidence 73111 12235889999988876300 0000111111 01223456
Q ss_pred cEEEEEEecCCccChhcchhhhhcccc--eEEEeCCCC
Q 004238 354 HVLDLFASALDQVGVAEMKVAVEKTGG--LVVLAESFG 389 (766)
Q Consensus 354 isvdlf~~~~~~~~l~~l~~l~~~TGG--~v~~~~~f~ 389 (766)
|.|..+.++. .++...|..++..+|| .++..+++.
T Consensus 170 i~i~~igvG~-~~~~~~L~~iA~~~~G~~~~~~~~~~~ 206 (223)
T 1q0p_A 170 LDVYVFGVGP-LVNQVNINALASKKDNEQHVFKVKDME 206 (223)
T ss_dssp EEEEEEECSS-CCCHHHHHHHSCCCTTCCCEEETTC--
T ss_pred cEEEEEEecC-cCCHHHHHHHhcCCCCCceEEEcCCHH
Confidence 6666666543 4688899999999999 777766553
No 12
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=3.1e-06 Score=86.95 Aligned_cols=147 Identities=16% Similarity=0.094 Sum_probs=102.8
Q ss_pred EEEEEEEcccchH-------HHHHHHHHHHHHhcc---CCCCcEEEEEEECC-eEEEEEcCCCCCcceeEecCCcccchh
Q 004238 136 VFVFVLDTCMIEE-------ELGYARSELKRAIGL---LPDNAMVGLVTFGT-QAHVHELGFSDMSKVYVFRGNKEISKD 204 (766)
Q Consensus 136 ~~vFvID~s~~~~-------~l~~~~~~l~~~l~~---lp~~~~VglItf~~-~V~~~~l~~~~~~~~~v~~g~~~~~~~ 204 (766)
..|||||+|.++. ++++.++++...++. ..+..+||||+|.. ...+..
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~--------------------- 63 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLS--------------------- 63 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEE---------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceecc---------------------
Confidence 5799999999984 378888887776663 45677999999953 222210
Q ss_pred hHHhhhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHH
Q 004238 205 QVLEQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATG 284 (766)
Q Consensus 205 ~l~~~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ 284 (766)
|+...+..+...|+.|+.. ..+.++.||+.|..
T Consensus 64 --------------------------------------plT~D~~~il~aL~~l~~~---------G~T~l~~gL~~A~~ 96 (268)
T 4b4t_W 64 --------------------------------------TFTAEFGKILAGLHDTQIE---------GKLHMATALQIAQL 96 (268)
T ss_dssp --------------------------------------EEESCHHHHHHHHTTCCCC---------SCCCHHHHHHHHHH
T ss_pred --------------------------------------CCcchHHHHHHHhhhcCcC---------CCCChHHHHHHHHH
Confidence 0111123355666776542 24689999999999
Q ss_pred HhhccCC-CCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecC
Q 004238 285 LLGACLP-GTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASAL 363 (766)
Q Consensus 285 ll~~~~~-~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~ 363 (766)
+++.... +..-||++|++|+-+. ..+-..++++++.++||.||++.++.
T Consensus 97 aLk~~~~k~~~~rIIlf~ds~~~~------------------------------~~~~l~~lak~lkk~gI~v~vIgFG~ 146 (268)
T 4b4t_W 97 TLKHRQNKVQHQRIVAFVCSPISD------------------------------SRDELIRLAKTLKKNNVAVDIINFGE 146 (268)
T ss_dssp HHHTCSCTTSEEEEEEEECSCCSS------------------------------CHHHHHHHHHHHHHHTEEEEEEEESS
T ss_pred HHHhcccCCCceEEEEEECCCCCC------------------------------CHHHHHHHHHHHHHcCCEEEEEEeCC
Confidence 9985432 2335899999986321 11225678999999999999999998
Q ss_pred CccChhcchhhhhcccc
Q 004238 364 DQVGVAEMKVAVEKTGG 380 (766)
Q Consensus 364 ~~~~l~~l~~l~~~TGG 380 (766)
+..+-..|..+++..+|
T Consensus 147 ~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 147 IEQNTELLDEFIAAVNN 163 (268)
T ss_dssp CCSSCCHHHHHHHHHCS
T ss_pred CccchHHHHHHHHHhcC
Confidence 76677788898877765
No 13
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.31 E-value=2.7e-05 Score=77.06 Aligned_cols=163 Identities=10% Similarity=0.103 Sum_probs=107.4
Q ss_pred CCcEEEEEEEcccchH--HHHHHHHHHHHHhccCC---CCcEEEEEEECCeEEEE-EcCCCCCcceeEecCCcccchhhH
Q 004238 133 LSPVFVFVLDTCMIEE--ELGYARSELKRAIGLLP---DNAMVGLVTFGTQAHVH-ELGFSDMSKVYVFRGNKEISKDQV 206 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp---~~~~VglItf~~~V~~~-~l~~~~~~~~~v~~g~~~~~~~~l 206 (766)
.+.-.+||||.|.+.. .++.+++.++..++.++ ++.+||+|+|++..+.. .+.
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~--------------------- 70 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLK--------------------- 70 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTT---------------------
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecC---------------------
Confidence 4577999999999864 48899999999999886 57899999999876542 111
Q ss_pred HhhhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHH-HH
Q 004238 207 LEQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVAT-GL 285 (766)
Q Consensus 207 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~-~l 285 (766)
+. ..++.+...|++|+.. .+ ..+.+|.||..|. .+
T Consensus 71 -------~~------------------------------~~~~~~~~~i~~l~~~-----gg--~~T~~~~aL~~a~~~~ 106 (202)
T 1ijb_A 71 -------DR------------------------------KRPSELRRIASQVKYA-----GS--QVASTSEVLKYTLFQI 106 (202)
T ss_dssp -------CC------------------------------CCHHHHHHHHHTCCCC-----CB--SCCCHHHHHHHHHHHT
T ss_pred -------CC------------------------------CCHHHHHHHHHhCcCC-----CC--CcCcHHHHHHHHHHHH
Confidence 00 0122355566666542 11 2378999999997 44
Q ss_pred hhccC-CCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCC
Q 004238 286 LGACL-PGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALD 364 (766)
Q Consensus 286 l~~~~-~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~ 364 (766)
+.... ++..-.|+++|+|.++.|. . .+ ..+.+..+.+.||.|-.+.++.
T Consensus 107 ~~~~~r~~~~~~iillTDG~~~~~~-----~---------~~---------------~~~~a~~l~~~gi~i~~igvG~- 156 (202)
T 1ijb_A 107 FSKIDRPEASRIALLLMASQEPQRM-----S---------RN---------------FVRYVQGLKKKKVIVIPVGIGP- 156 (202)
T ss_dssp SSSCSCTTSEEEEEEEECCCCCGGG-----C---------TT---------------HHHHHHHHHHTTEEEEEEEEST-
T ss_pred hccCCCCCCCeEEEEEccCCCCccc-----h---------HH---------------HHHHHHHHHHCCCEEEEEecCC-
Confidence 44211 1223457888898764320 0 00 1234556667888776666653
Q ss_pred ccChhcchhhhhc-ccceEEEeCCCCc
Q 004238 365 QVGVAEMKVAVEK-TGGLVVLAESFGH 390 (766)
Q Consensus 365 ~~~l~~l~~l~~~-TGG~v~~~~~f~~ 390 (766)
..+..+|..++.. +||.+|..++|+.
T Consensus 157 ~~~~~~L~~iA~~~~~~~~~~~~~~~~ 183 (202)
T 1ijb_A 157 HANLKQIRLIEKQAPENKAFVLSSVDE 183 (202)
T ss_dssp TSCHHHHHHHHHHCTTCCCEEESSGGG
T ss_pred cCCHHHHHHHhCCCCcccEEEeCCHHH
Confidence 4688899999985 6789988887754
No 14
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.26 E-value=3.7e-05 Score=75.81 Aligned_cols=162 Identities=13% Similarity=0.053 Sum_probs=107.4
Q ss_pred CCcEEEEEEEcccchHHHHHHHHHHHHHhccCC---CCcEEEEEEECCeEEEE-EcCCCCCcceeEecCCcccchhhHHh
Q 004238 133 LSPVFVFVLDTCMIEEELGYARSELKRAIGLLP---DNAMVGLVTFGTQAHVH-ELGFSDMSKVYVFRGNKEISKDQVLE 208 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~VglItf~~~V~~~-~l~~~~~~~~~v~~g~~~~~~~~l~~ 208 (766)
.+.-.+||||+|.++..++.+++.++..++.+. ++.+||+|+|++..+.. .+.
T Consensus 5 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~----------------------- 61 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLN----------------------- 61 (200)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTT-----------------------
T ss_pred CcccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCC-----------------------
Confidence 466789999999998778889999999998885 68999999999876542 111
Q ss_pred hhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHH-hh
Q 004238 209 QLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGL-LG 287 (766)
Q Consensus 209 ~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~l-l~ 287 (766)
+. ..+..+.+.|+.++.. .+ ..+.+|.||..|... +.
T Consensus 62 -----~~------------------------------~~~~~~~~~i~~l~~~-----~G--~~T~~~~al~~a~~~~~~ 99 (200)
T 1v7p_C 62 -----TY------------------------------KTKEEMIVATSQTSQY-----GG--DLTNTFGAIQYARKYAYS 99 (200)
T ss_dssp -----TC------------------------------SSHHHHHHHHHHCCCC-----CC--SCCCHHHHHHHHHHHTTS
T ss_pred -----Cc------------------------------CCHHHHHHHHHhhhcc-----CC--CCCcHHHHHHHHHHhhcc
Confidence 00 0112244556666532 11 136899999999985 43
Q ss_pred cc---CCCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecC-
Q 004238 288 AC---LPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASAL- 363 (766)
Q Consensus 288 ~~---~~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~- 363 (766)
.. .++....|+++|+|.++.+. -..+.+.++.+.||.|..+..+.
T Consensus 100 ~~~g~r~~~~~~ivllTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igvg~~ 148 (200)
T 1v7p_C 100 AASGGRRSATKVMVVVTDGESHDGS-------------------------------MLKAVIDQCNHDNILRFGIAVLGY 148 (200)
T ss_dssp GGGTCCTTSEEEEEEEESSCCSCGG-------------------------------GHHHHHHHHHHTTEEEEEEEECHH
T ss_pred cccCCCCCCCeEEEEEccCCCCCcc-------------------------------cHHHHHHHHHHCCCEEEEEEeccc
Confidence 11 11223458889998765321 02345666778898888777632
Q ss_pred ---CccC----hhcchhhhhcccce-EEEeCCCCc
Q 004238 364 ---DQVG----VAEMKVAVEKTGGL-VVLAESFGH 390 (766)
Q Consensus 364 ---~~~~----l~~l~~l~~~TGG~-v~~~~~f~~ 390 (766)
..++ ..+|..++..|||. ++..+++..
T Consensus 149 ~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 183 (200)
T 1v7p_C 149 LNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAA 183 (200)
T ss_dssp HHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGG
T ss_pred ccccccchhhHHHHHHHHhCCccHhcEEEcCCHHH
Confidence 2344 57799999999885 566676654
No 15
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.23 E-value=5.4e-05 Score=73.88 Aligned_cols=158 Identities=17% Similarity=0.144 Sum_probs=106.1
Q ss_pred CCcEEEEEEEcccchH--HHHHHHHHHHHHhccCC---CCcEEEEEEECCeEEEE-EcCCCCCcceeEecCCcccchhhH
Q 004238 133 LSPVFVFVLDTCMIEE--ELGYARSELKRAIGLLP---DNAMVGLVTFGTQAHVH-ELGFSDMSKVYVFRGNKEISKDQV 206 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp---~~~~VglItf~~~V~~~-~l~~~~~~~~~v~~g~~~~~~~~l 206 (766)
.+.-.+||||.|.++. .++.+++.+...++.++ ++.+||+|+|++.++.. .+...
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~------------------- 64 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVV------------------- 64 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCC-------------------
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCC-------------------
Confidence 4567899999999974 48899999999888875 35899999999876642 11000
Q ss_pred HhhhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHh
Q 004238 207 LEQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLL 286 (766)
Q Consensus 207 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll 286 (766)
..++.+...++.++.. ...+.+|.||..|...+
T Consensus 65 ---------------------------------------~~~~~~~~~i~~l~~~--------~g~T~~~~aL~~a~~~l 97 (189)
T 1atz_A 65 ---------------------------------------PEKAHLLSLVDVMQRE--------GGPSQIGDALGFAVRYL 97 (189)
T ss_dssp ---------------------------------------CCHHHHHHHHHTCCCC--------CCCCCHHHHHHHHHHHH
T ss_pred ---------------------------------------CCHHHHHHHHHhCcCC--------CCcchHHHHHHHHHHHH
Confidence 0122355566666531 23478999999999988
Q ss_pred hccC---CCCccE-EEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEec
Q 004238 287 GACL---PGTGAR-IVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASA 362 (766)
Q Consensus 287 ~~~~---~~~gGr-Ii~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~ 362 (766)
.... +....| ++++++|.++.. ..+.+..+.+.||.|..+..+
T Consensus 98 ~~~~~g~r~~~~~~vivltdg~~~~~---------------------------------~~~~~~~~~~~gi~v~~igvG 144 (189)
T 1atz_A 98 TSEMHGARPGASKAVVILVTDVSVDS---------------------------------VDAAADAARSNRVTVFPIGIG 144 (189)
T ss_dssp HSCCTTCCTTSEEEEEEEECSCCSSC---------------------------------CHHHHHHHHHTTEEEEEEEES
T ss_pred hccccCCCCCCCcEEEEEeCCCCCch---------------------------------HHHHHHHHHHCCCEEEEEEcC
Confidence 6321 111235 677888753211 023456667789888777775
Q ss_pred CCccChhcchhhhhcccc-eEEEeCCCCc
Q 004238 363 LDQVGVAEMKVAVEKTGG-LVVLAESFGH 390 (766)
Q Consensus 363 ~~~~~l~~l~~l~~~TGG-~v~~~~~f~~ 390 (766)
. ..+..+|..++..++| .++...+|..
T Consensus 145 ~-~~~~~~L~~iA~~~~~~~~~~~~~~~~ 172 (189)
T 1atz_A 145 D-RYDAAQLRILAGPAGDSNVVKLQRIED 172 (189)
T ss_dssp S-SSCHHHHHHHTGGGGGGGCEEESSTTH
T ss_pred C-cCCHHHHHHHHCCCcccCEEEecChhh
Confidence 4 4678889999999875 5676676653
No 16
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.22 E-value=3.4e-05 Score=77.54 Aligned_cols=163 Identities=13% Similarity=0.022 Sum_probs=107.5
Q ss_pred CCcEEEEEEEcccchHHHHHHHHHHHHHhccCC---CCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhh
Q 004238 133 LSPVFVFVLDTCMIEEELGYARSELKRAIGLLP---DNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQ 209 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~ 209 (766)
.+.-.+||||+|.++..++.+++.+...++.+. ++.+||+|+|++.++..- .
T Consensus 21 ~~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~-~------------------------ 75 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF-N------------------------ 75 (223)
T ss_dssp -CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEE-C------------------------
T ss_pred CcceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEE-e------------------------
Confidence 456799999999998888899999999998874 689999999998765420 0
Q ss_pred hccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHh-hc
Q 004238 210 LGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLL-GA 288 (766)
Q Consensus 210 l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll-~~ 288 (766)
+.+. . .+..+.+.|+.+... .+ ..+.+|.||..|...+ ..
T Consensus 76 --l~~~----------------------~--------~~~~~~~~i~~l~~~-----gG--~~T~~~~aL~~a~~~l~~~ 116 (223)
T 2b2x_A 76 --LNKY----------------------S--------STEEVLVAANKIVQR-----GG--RQTMTALGIDTARKEAFTE 116 (223)
T ss_dssp --TTTC----------------------C--------SHHHHHHHHTTCCCC-----CC--SSCCHHHHHHHHHHTTSSG
T ss_pred --cCCC----------------------C--------CHHHHHHHHHhhhcc-----CC--CCccHHHHHHHHHHHhcCc
Confidence 0000 0 111133344444321 11 1368999999999863 31
Q ss_pred ---cCCCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCc
Q 004238 289 ---CLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQ 365 (766)
Q Consensus 289 ---~~~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~ 365 (766)
..++....|+++++|.++.|. -..+.+..+.+.||.|..+.++.+.
T Consensus 117 ~~~~~~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~v~~igvG~~~ 165 (223)
T 2b2x_A 117 ARGARRGVKKVMVIVTDGESHDNY-------------------------------RLKQVIQDCEDENIQRFSIAILGHY 165 (223)
T ss_dssp GGTCCTTSEEEEEEEESSCCTTGG-------------------------------GHHHHHHHHHTTTEEEEEEEECGGG
T ss_pred ccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecCcc
Confidence 111233458889999776542 0234566677889888877775432
Q ss_pred c--------Chhcchhhhhc-ccceEEEeCCCCc
Q 004238 366 V--------GVAEMKVAVEK-TGGLVVLAESFGH 390 (766)
Q Consensus 366 ~--------~l~~l~~l~~~-TGG~v~~~~~f~~ 390 (766)
- ...+|..+|.. |||.++..+++..
T Consensus 166 ~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~ 199 (223)
T 2b2x_A 166 NRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 199 (223)
T ss_dssp C---CCCHHHHHHHHTTSCSSGGGTEEEESSTTG
T ss_pred ccccccchhHHHHHHHHhCCCchhcEEEeCCHHH
Confidence 1 03789999998 9999999887654
No 17
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.20 E-value=6.9e-05 Score=72.36 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=96.3
Q ss_pred CCcEEEEEEEcccchHH-----HHHHHHHHHHHhccCCCCcEEEEEEECCeEEEEE-cCCCCCcceeEecCCcccchhhH
Q 004238 133 LSPVFVFVLDTCMIEEE-----LGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHE-LGFSDMSKVYVFRGNKEISKDQV 206 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~-----l~~~~~~l~~~l~~lp~~~~VglItf~~~V~~~~-l~~~~~~~~~v~~g~~~~~~~~l 206 (766)
.+.-.+||||.|.++.. ++.+++.+... +.++.+||+|+|++..+..- +.
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~---~~~~~~v~lv~f~~~~~~~~~~~--------------------- 60 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERF---VSPEMRLSFIVFSSQATIILPLT--------------------- 60 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHC---CCTTEEEEEEEESSSEEEEEEEE---------------------
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHh---cCCCceEEEEEeCCCceEEECCC---------------------
Confidence 46779999999998754 23344443333 33689999999998665421 11
Q ss_pred HhhhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHh
Q 004238 207 LEQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLL 286 (766)
Q Consensus 207 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll 286 (766)
..+..+...|+.|.... + ...+.++.||..|...+
T Consensus 61 ---------------------------------------~~~~~~~~~l~~l~~~~---~---~g~T~~~~al~~a~~~l 95 (182)
T 1shu_X 61 ---------------------------------------GDRGKISKGLEDLKRVS---P---VGETYIHEGLKLANEQI 95 (182)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHTCC---C---CSCCCHHHHHHHHHHHH
T ss_pred ---------------------------------------CCHHHHHHHHHhcccCC---C---CCCchHHHHHHHHHHHH
Confidence 01122445555554321 1 12578999999999998
Q ss_pred hccC-CCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCc
Q 004238 287 GACL-PGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQ 365 (766)
Q Consensus 287 ~~~~-~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~ 365 (766)
.... +.....|+++++|.++.+ ........+..+...|+.|..+..+ .
T Consensus 96 ~~~~~~~~~~~iiliTDG~~~~~-----------------------------~~~~~~~~~~~~~~~~i~i~~igvg--~ 144 (182)
T 1shu_X 96 QKAGGLKTSSIIIALTDGKLDGL-----------------------------VPSYAEKEAKISRSLGASVYCVGVL--D 144 (182)
T ss_dssp HHHTGGGSCEEEEEEECCCCCTT-----------------------------HHHHHHHHHHHHHHTTCEEEEEECS--S
T ss_pred HhccCCCCCeEEEEECCCCcCCC-----------------------------CchhHHHHHHHHHhCCCEEEEEeCC--c
Confidence 6321 134467888899875421 0112344666777889887777765 5
Q ss_pred cChhcchhhhhcccceEE
Q 004238 366 VGVAEMKVAVEKTGGLVV 383 (766)
Q Consensus 366 ~~l~~l~~l~~~TGG~v~ 383 (766)
.+-..|..++..+||..+
T Consensus 145 ~~~~~L~~ia~~~~~~~~ 162 (182)
T 1shu_X 145 FEQAQLERIADSKEQVFP 162 (182)
T ss_dssp CCHHHHHHHSSSGGGEEE
T ss_pred CCHHHHHHHhCCCCceEE
Confidence 678889999999987543
No 18
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.11 E-value=3.9e-05 Score=76.48 Aligned_cols=163 Identities=13% Similarity=0.040 Sum_probs=107.4
Q ss_pred CCcEEEEEEEcccchHHHHHHHHHHHHHhccCC---CCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhh
Q 004238 133 LSPVFVFVLDTCMIEEELGYARSELKRAIGLLP---DNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQ 209 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~ 209 (766)
.+.-.+||||.|.++..++.+++.++..++.+. ++.+||+|+|++.++..- .
T Consensus 6 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~-~------------------------ 60 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF-N------------------------ 60 (213)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEE-C------------------------
T ss_pred CCccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEE-e------------------------
Confidence 467899999999998788899999999888774 689999999998765420 0
Q ss_pred hccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHh-hc
Q 004238 210 LGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLL-GA 288 (766)
Q Consensus 210 l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll-~~ 288 (766)
+.+. . .+..+.+.|+.+... .+ ..+.+|.||..|...+ ..
T Consensus 61 --l~~~----------------------~--------~~~~~~~~i~~l~~~-----~G--~~T~~~~aL~~a~~~l~~~ 101 (213)
T 1pt6_A 61 --LNKY----------------------S--------STEEVLVAAKKIVQR-----GG--RQTMTALGTDTARKEAFTE 101 (213)
T ss_dssp --TTTC----------------------S--------SHHHHHHHHHTCCCC-----CC--SSCCHHHHHHHHHHTTTSG
T ss_pred --cccc----------------------C--------CHHHHHHHHHhccCC-----CC--CcccHHHHHHHHHHHhcCc
Confidence 0000 0 111233445555431 11 1367999999999864 31
Q ss_pred ---cCCCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCc
Q 004238 289 ---CLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQ 365 (766)
Q Consensus 289 ---~~~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~ 365 (766)
..++....|+++++|.++.|. -+.+.+.++.+.||.|..+.++.+.
T Consensus 102 ~~~~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igig~~~ 150 (213)
T 1pt6_A 102 ARGARRGVKKVMVIVTDGESHDNH-------------------------------RLKKVIQDCEDENIQRFSIAILGSY 150 (213)
T ss_dssp GGTCCTTCEEEEEEEESSCCSCSH-------------------------------HHHHHHHHHHHTTEEEEEEEECHHH
T ss_pred ccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecccc
Confidence 111234458889998765431 1234566777889887777665321
Q ss_pred ----cC----hhcchhhhhc-ccceEEEeCCCCc
Q 004238 366 ----VG----VAEMKVAVEK-TGGLVVLAESFGH 390 (766)
Q Consensus 366 ----~~----l~~l~~l~~~-TGG~v~~~~~f~~ 390 (766)
.+ ..+|..++.. |||.++..+++..
T Consensus 151 ~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~ 184 (213)
T 1pt6_A 151 NRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 184 (213)
T ss_dssp HHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred ccccccchhhHHHHHHHhCCCchhcEEEeCCHHH
Confidence 11 3678999998 7899999887654
No 19
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.10 E-value=2.8e-05 Score=76.36 Aligned_cols=161 Identities=15% Similarity=0.147 Sum_probs=106.9
Q ss_pred CCcEEEEEEEcccchH--HHHHHHHHHHHHhccC-CCCcEEEEEEECCeEEEE-EcCCCCCcceeEecCCcccchhhHHh
Q 004238 133 LSPVFVFVLDTCMIEE--ELGYARSELKRAIGLL-PDNAMVGLVTFGTQAHVH-ELGFSDMSKVYVFRGNKEISKDQVLE 208 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l-p~~~~VglItf~~~V~~~-~l~~~~~~~~~v~~g~~~~~~~~l~~ 208 (766)
.+.-.+||||+|.++. .++..++.++..++.+ +++.+||+|+|++.++.. .+. ....
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~-------------------~~~~ 68 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE-------------------EFRR 68 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHH-------------------HHHH
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecC-------------------ccCC
Confidence 4577999999999974 3788899999999988 789999999999876542 110 0000
Q ss_pred hhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHH-HHhh
Q 004238 209 QLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVAT-GLLG 287 (766)
Q Consensus 209 ~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~-~ll~ 287 (766)
. . .+...|+.+.. . ...+.+|.||..|. .++.
T Consensus 69 ---~-------------------------~-----------~~~~~i~~l~~-----~---~g~T~~~~al~~a~~~l~~ 101 (198)
T 1n3y_A 69 ---S-------------------------S-----------NPLSLLASVHQ-----L---QGFTYTATAIQNVVHRLFH 101 (198)
T ss_dssp ---C-------------------------S-----------SGGGGGTTCCC-----C---CSCBCHHHHHHHHHTTTTS
T ss_pred ---H-------------------------H-----------HHHHHHhcCcC-----C---CCCchHHHHHHHHHHHHhC
Confidence 0 0 01122333322 1 23578999999999 5444
Q ss_pred cc---CCCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCC
Q 004238 288 AC---LPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALD 364 (766)
Q Consensus 288 ~~---~~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~ 364 (766)
.. .++....|+++++|.++.++- + +.+.+..+.+.||.|..+.++.+
T Consensus 102 ~~~~~r~~~~~~iillTDG~~~~~~~---------------~---------------~~~~~~~~~~~gi~i~~igvG~~ 151 (198)
T 1n3y_A 102 ASYGARRDAAKILIVITDGKKEGDSL---------------D---------------YKDVIPMADAAGIIRYAIGVGLA 151 (198)
T ss_dssp GGGTCCTTSEEEEEEEESSCCBSCSS---------------C---------------HHHHHHHHHHTTCEEEEEEESGG
T ss_pred cccCCCCCCceEEEEECCCCCCCCcc---------------c---------------HHHHHHHHHHCCCEEEEEEcccc
Confidence 21 123345789999998763320 0 23456667788999888887654
Q ss_pred c---cChhcchhhhhcccceE-EEeCCCC
Q 004238 365 Q---VGVAEMKVAVEKTGGLV-VLAESFG 389 (766)
Q Consensus 365 ~---~~l~~l~~l~~~TGG~v-~~~~~f~ 389 (766)
. .+...|..++..|||.. +..+++.
T Consensus 152 ~~~~~~~~~L~~iA~~~~g~~~~~~~~~~ 180 (198)
T 1n3y_A 152 FQNRNSWKELNDIASKPSQEHIFKVEDFD 180 (198)
T ss_dssp GGSSTTHHHHHHHSCSSSGGGEEEESSGG
T ss_pred ccccccHHHHHHHHcCCCcccEEEeCCHH
Confidence 3 36789999999999974 6666654
No 20
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.05 E-value=4.6e-05 Score=74.64 Aligned_cols=163 Identities=12% Similarity=0.131 Sum_probs=103.7
Q ss_pred CCcEEEEEEEcccchH--HHHHHHHHHHHHhccC-CCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhh
Q 004238 133 LSPVFVFVLDTCMIEE--ELGYARSELKRAIGLL-PDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQ 209 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l-p~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~ 209 (766)
.+.-.+||||.|.++. .++.+++.++..++.+ +++.+||+|+|++.++.. +. +...
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~-~~--------------------l~~~ 62 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIH-FT--------------------FKEF 62 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEE-EC--------------------HHHH
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEE-Ee--------------------cCCc
Confidence 4567899999999974 4788888888888877 467899999999876542 10 0000
Q ss_pred hccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHH-Hhhc
Q 004238 210 LGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATG-LLGA 288 (766)
Q Consensus 210 l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~-ll~~ 288 (766)
- + +..+...|+.|+. . ...+.+|.||..|.. ++..
T Consensus 63 ~---~---------------------------------~~~~~~~i~~l~~-----~---~g~T~~~~aL~~a~~~l~~~ 98 (194)
T 1mf7_A 63 Q---N---------------------------------NPNPRSLVKPITQ-----L---LGRTHTATGIRKVVRELFNI 98 (194)
T ss_dssp H---H---------------------------------SCCHHHHHTTCCC-----C---CSCBCHHHHHHHHHHTTTSG
T ss_pred C---C---------------------------------HHHHHHHHHhCcC-----C---CCCchHHHHHHHHHHHhcCc
Confidence 0 0 0013344555542 1 135789999999996 4331
Q ss_pred c---CCCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCc
Q 004238 289 C---LPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQ 365 (766)
Q Consensus 289 ~---~~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~ 365 (766)
. .++....|+++++|.++..+- + +.+.+.++.+.||.|..+..+.+.
T Consensus 99 ~~~~r~~~~~~iillTDG~~~~d~~---------------~---------------~~~~~~~~~~~gi~v~~igvG~~~ 148 (194)
T 1mf7_A 99 TNGARKNAFKILVVITDGEKFGDPL---------------G---------------YEDVIPEADREGVIRYVIGVGDAF 148 (194)
T ss_dssp GGTCCTTSEEEEEEEESSCCBSCSS---------------C---------------GGGTHHHHHHTTEEEEEEEESGGG
T ss_pred ccCCCCCCCeEEEEEcCCCCCCCch---------------h---------------hHHHHHHHHHCCCEEEEEEecccc
Confidence 0 111234588899998771110 0 011245566788888777776432
Q ss_pred ---cChhcchhhhhcc-cceEEEeCCCCc
Q 004238 366 ---VGVAEMKVAVEKT-GGLVVLAESFGH 390 (766)
Q Consensus 366 ---~~l~~l~~l~~~T-GG~v~~~~~f~~ 390 (766)
.+..+|..++..+ +|.++..+++..
T Consensus 149 ~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 177 (194)
T 1mf7_A 149 RSEKSRQELNTIASKPPRDHVFQVNNFEA 177 (194)
T ss_dssp CSHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred cccccHHHHHHHhCCCCcccEEEeCCHHH
Confidence 1368899999986 588888887654
No 21
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.04 E-value=2.8e-05 Score=88.32 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=112.7
Q ss_pred CCcEEEEEEEcccchH--HHHHHHHHHHHHhccC---CCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHH
Q 004238 133 LSPVFVFVLDTCMIEE--ELGYARSELKRAIGLL---PDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVL 207 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l---p~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~ 207 (766)
.+.-.+||||.|.++. .++.++++++..++.| +++.+||||+|++..++. +....
T Consensus 8 ~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~-~~l~~------------------- 67 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVL-MSVLN------------------- 67 (509)
T ss_dssp SEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEE-ECTTS-------------------
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCcee-EeccC-------------------
Confidence 5677999999999974 3888999999988877 788999999999876652 11000
Q ss_pred hhhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhh
Q 004238 208 EQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLG 287 (766)
Q Consensus 208 ~~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~ 287 (766)
+....++.+...|+.|+... ......+.++.||..|..++.
T Consensus 68 -----------------------------------~~~~~~~~~~~~l~~l~~~~----~~~~ggT~~~~aL~~a~~~l~ 108 (509)
T 2odp_A 68 -----------------------------------DNSRDMTEVISSLENANYKD----HENGTGTNTYAALNSVYLMMN 108 (509)
T ss_dssp -----------------------------------GGGGCHHHHHHHHHTCCGGG----GTTCCSCCHHHHHHHHHHHHH
T ss_pred -----------------------------------CCCCCHHHHHHHHHhccccc----CCCCCCccHHHHHHHHHHHHh
Confidence 00011233556667776431 001245789999999999985
Q ss_pred ccCC----------CCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHH--HHHHcCcE
Q 004238 288 ACLP----------GTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAK--QLVSQGHV 355 (766)
Q Consensus 288 ~~~~----------~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~--~~~~~~is 355 (766)
.... .....|+++|+|.++.|. .. ....+-.+++.. +..+.|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-~~-----------------------~~~~~~~~~~~~~~~~~~~~i~ 164 (509)
T 2odp_A 109 NQMRLLGMETMAWQEIRHAIILLTDGKSNMGG-SP-----------------------KTAVDHIREILNINQKRNDYLD 164 (509)
T ss_dssp HHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-CT-----------------------HHHHHHHHHHTTCCSTTGGGEE
T ss_pred hcccccccccccccccceEEEEECCCCccCCC-Ch-----------------------hHHHHHHHHHhhccccccCceE
Confidence 2100 112457999999887652 00 000000000000 01156777
Q ss_pred EEEEEecCCccChhcchhhhhcccce--EEEeCCCCchhhHHHHHHH
Q 004238 356 LDLFASALDQVGVAEMKVAVEKTGGL--VVLAESFGHSVFKDSFKRI 400 (766)
Q Consensus 356 vdlf~~~~~~~~l~~l~~l~~~TGG~--v~~~~~f~~~~~~~~l~~~ 400 (766)
|..+.++.+..+..+|..+|..+||. +++.++++ .+.+.+.++
T Consensus 165 i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~--~l~~~~~~i 209 (509)
T 2odp_A 165 IYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTK--ALHQVFEHM 209 (509)
T ss_dssp EEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHH--HHHHHHHHH
T ss_pred EEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHH--HHHHHHHhh
Confidence 77776665448999999999999998 66665542 234444444
No 22
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.04 E-value=0.0001 Score=76.90 Aligned_cols=165 Identities=13% Similarity=0.045 Sum_probs=108.2
Q ss_pred CCcEEEEEEEcccchH--HH-HHHHHHHHHHhccCCC---CcEEEEEEECCeEEEE-EcCCCCCcceeEecCCcccchhh
Q 004238 133 LSPVFVFVLDTCMIEE--EL-GYARSELKRAIGLLPD---NAMVGLVTFGTQAHVH-ELGFSDMSKVYVFRGNKEISKDQ 205 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~--~l-~~~~~~l~~~l~~lp~---~~~VglItf~~~V~~~-~l~~~~~~~~~v~~g~~~~~~~~ 205 (766)
.+.-++||||.|.++. .+ +.++++++..++.++. +.+||||+|++.++.. .+....
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~----------------- 82 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDA----------------- 82 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSC-----------------
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccC-----------------
Confidence 4667999999999975 35 8899999999998875 7899999999876542 222110
Q ss_pred HHhhhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 004238 206 VLEQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGL 285 (766)
Q Consensus 206 l~~~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~l 285 (766)
...+..+...|+.|+... .. ...+.+|.||..|...
T Consensus 83 ---------------------------------------~~~~~~l~~~i~~l~~~~--~~---~G~T~~~~aL~~a~~~ 118 (281)
T 4hqf_A 83 ---------------------------------------SKNKEKALIIIKSLLSTN--LP---YGKTSLTDALLQVRKH 118 (281)
T ss_dssp ---------------------------------------SSCHHHHHHHHHHHHHTT--GG---GCSCCHHHHHHHHHHH
T ss_pred ---------------------------------------ccCHHHHHHHHHHHhhcc--CC---CCCccHHHHHHHHHHH
Confidence 001122444555554211 11 2257899999999887
Q ss_pred hhccC--CCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecC
Q 004238 286 LGACL--PGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASAL 363 (766)
Q Consensus 286 l~~~~--~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~ 363 (766)
+.... ++....|+++|+|.++.+ .-..+.+..+.+.||.|-.+.++.
T Consensus 119 l~~~~~r~~~~~~iillTDG~~~d~-------------------------------~~~~~~~~~l~~~gv~i~~igiG~ 167 (281)
T 4hqf_A 119 LNDRINRENANQLVVILTDGIPDSI-------------------------------QDSLKESRKLSDRGVKIAVFGIGQ 167 (281)
T ss_dssp HHTSCCCTTCEEEEEEEESSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEEESS
T ss_pred HHhccCCCCCCEEEEEEecCCCCCc-------------------------------HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 76210 112345788888865421 012345666778888887777654
Q ss_pred CccChhcchhhhhc--ccc--eEEEeCCCCc
Q 004238 364 DQVGVAEMKVAVEK--TGG--LVVLAESFGH 390 (766)
Q Consensus 364 ~~~~l~~l~~l~~~--TGG--~v~~~~~f~~ 390 (766)
..+-..|..++.. +|| .++...+|+.
T Consensus 168 -~~~~~~L~~iA~~~~~~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 168 -GINVAFNRFLVGCHPSDGKCNLYADSAWEN 197 (281)
T ss_dssp -SCCHHHHHHHTTSCSSSSCCTTEEEECGGG
T ss_pred -ccCHHHHHhhhCCCCCCCCCceEEecchhh
Confidence 3677788889877 566 7888888765
No 23
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.03 E-value=3.8e-07 Score=89.32 Aligned_cols=110 Identities=20% Similarity=0.190 Sum_probs=75.7
Q ss_pred CCcEEEEEEEcccch--HHHHHHHHHHHHHhccC-CCCcEEEEEEECC-eEEEEEcCCCCCcceeEecCCcccchhhHHh
Q 004238 133 LSPVFVFVLDTCMIE--EELGYARSELKRAIGLL-PDNAMVGLVTFGT-QAHVHELGFSDMSKVYVFRGNKEISKDQVLE 208 (766)
Q Consensus 133 ~~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l-p~~~~VglItf~~-~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~ 208 (766)
.+..++||||+|.++ ..++.+++++...++.+ +++.+||+|+|++ ..++
T Consensus 4 ~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~--------------------------- 56 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQV--------------------------- 56 (189)
T ss_dssp SCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCB---------------------------
T ss_pred CCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceE---------------------------
Confidence 457789999999997 34888899999888776 7889999999985 2110
Q ss_pred hhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhc
Q 004238 209 QLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGA 288 (766)
Q Consensus 209 ~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~ 288 (766)
+ + |+. .....+...|+.++.. ..+.++.||..|..++..
T Consensus 57 -~-~-----------------------~~~-------~~~~~~~~~i~~l~~~---------g~T~~~~al~~a~~~l~~ 95 (189)
T 2x31_A 57 -L-L-----------------------QPS-------RSLTQTKRQLQGLPGG---------GGTPLASGMEMAMVTAKQ 95 (189)
T ss_dssp -C-T-----------------------TTC-------SCHHHHHHHHHHCCCC---------BCCCCHHHHHHHHHHHHT
T ss_pred -e-c-----------------------CCC-------CCHHHHHHHHhcCCCC---------CCCCHHHHHHHHHHHHHh
Confidence 0 0 000 0123355666776542 246789999999999974
Q ss_pred cC-CCCccEEEEEeCCCCCCCCc
Q 004238 289 CL-PGTGARIVALVGGPCTEGPG 310 (766)
Q Consensus 289 ~~-~~~gGrIi~f~sg~pt~GpG 310 (766)
.. ++....|+++++|.++.|+.
T Consensus 96 ~~~~~~~~~ivliTDG~~~~~~~ 118 (189)
T 2x31_A 96 ARSRGMTPTIALLTDGRGNIALD 118 (189)
T ss_dssp CTTTCSSEEEEECCBSCCSSCCT
T ss_pred ccCCCCceEEEEECCCCCCCCCC
Confidence 21 12346889999999998753
No 24
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.03 E-value=3.3e-05 Score=87.43 Aligned_cols=180 Identities=17% Similarity=0.143 Sum_probs=109.6
Q ss_pred cEEEEEEEcccchH--HHHHHHHHHHHHhccC---CCCcEEEEEEECCeEEEEE-cCCCCCcceeEecCCcccchhhHHh
Q 004238 135 PVFVFVLDTCMIEE--ELGYARSELKRAIGLL---PDNAMVGLVTFGTQAHVHE-LGFSDMSKVYVFRGNKEISKDQVLE 208 (766)
Q Consensus 135 p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l---p~~~~VglItf~~~V~~~~-l~~~~~~~~~v~~g~~~~~~~~l~~ 208 (766)
.-.+||||+|.++. .++.+++.++..++.+ +++.+||||+|++..++.- +..
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~---------------------- 59 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSE---------------------- 59 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTS----------------------
T ss_pred eeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeecccc----------------------
Confidence 45799999999974 4888888888887754 4578999999998765431 100
Q ss_pred hhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhc
Q 004238 209 QLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGA 288 (766)
Q Consensus 209 ~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~ 288 (766)
+....++.+.+.|++|.... ......+.+|.||..|..++..
T Consensus 60 ----------------------------------~~~~~~~~~~~~l~~l~~~~----~~~~g~T~~~~al~~a~~~l~~ 101 (497)
T 1rrk_A 60 ----------------------------------ADSSNADWVTKQLNEINYED----HKLKSGTNTKKALQAVYSMMSW 101 (497)
T ss_dssp ----------------------------------GGGGCHHHHHHHHHHCCGGG----SCCTTCCCHHHHHHHHHHHHCC
T ss_pred ----------------------------------ccccCHHHHHHHHHhCcCcc----ccccCccCHHHHHHHHHHHhhh
Confidence 01112344667777776421 0012457899999999999842
Q ss_pred cC-------CCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHH------HHHHHHcCcE
Q 004238 289 CL-------PGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGL------AKQLVSQGHV 355 (766)
Q Consensus 289 ~~-------~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~l------a~~~~~~~is 355 (766)
.. +.....|+++|+|.++.|...... .+-.++. +..+.+.||.
T Consensus 102 ~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~i~ 157 (497)
T 1rrk_A 102 PDDVPPEGWNRTRHVIILMTDGLHNMGGDPITV------------------------IDEIRDLLYIGKDRKNPREDYLD 157 (497)
T ss_dssp C------CGGGCEEEEEEEECSCCCSSSCTHHH------------------------HHHHHHHTTCSSCC-CCCGGGEE
T ss_pred hhccccccccccceEEEEEeCCCcccCCChhHH------------------------HHHHHHHhhhhcccccchhcCee
Confidence 11 123356889999998876411000 0000000 0111233666
Q ss_pred EEEEEecCCccChhcchhhhhcccc--eEEEeCCCCchhhHHHHHHHH
Q 004238 356 LDLFASALDQVGVAEMKVAVEKTGG--LVVLAESFGHSVFKDSFKRIF 401 (766)
Q Consensus 356 vdlf~~~~~~~~l~~l~~l~~~TGG--~v~~~~~f~~~~~~~~l~~~l 401 (766)
|..+..+ +.++...|..+|..+|| .++..++++ .+.+.+.+.+
T Consensus 158 v~~igvG-~~~~~~~L~~iA~~~~g~~~~~~~~~~~--~l~~~~~~~i 202 (497)
T 1rrk_A 158 VYVFGVG-PLVNQVNINALASKKDNEQHVCKVKDME--CLEDVFYQMI 202 (497)
T ss_dssp EEEEECS-SSCCHHHHHHHSCCCTTCCCEEETTCHH--HHHHHHHHHS
T ss_pred EEEecCC-CccCHHHHHHHhcCCCCcceEEEeCCHH--HHhhhhhhcc
Confidence 6666554 34788899999999999 777766442 3444444444
No 25
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.96 E-value=0.00011 Score=71.04 Aligned_cols=157 Identities=13% Similarity=0.067 Sum_probs=98.3
Q ss_pred CCcEEEEEEEcccchHH-HHHHHHHHHHHhcc-CCCCcEEEEEEECCeEEEEE-cCCCCCcceeEecCCcccchhhHHhh
Q 004238 133 LSPVFVFVLDTCMIEEE-LGYARSELKRAIGL-LPDNAMVGLVTFGTQAHVHE-LGFSDMSKVYVFRGNKEISKDQVLEQ 209 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~-l~~~~~~l~~~l~~-lp~~~~VglItf~~~V~~~~-l~~~~~~~~~v~~g~~~~~~~~l~~~ 209 (766)
.+.-.+|+||.|.++.. .+.+++.++..+.. +.++.+||+|+|++..+..- +.
T Consensus 6 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~------------------------ 61 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLT------------------------ 61 (185)
T ss_dssp SEEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE------------------------
T ss_pred CCeeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccC------------------------
Confidence 45668999999999743 44555555555543 34689999999998766531 11
Q ss_pred hccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhcc
Q 004238 210 LGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGAC 289 (766)
Q Consensus 210 l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~ 289 (766)
..++.+...|+.|+.. .+ ...+.+|.||..|...+...
T Consensus 62 ------------------------------------~~~~~~~~~i~~l~~~---~~---~g~T~~~~al~~a~~~l~~~ 99 (185)
T 3n2n_F 62 ------------------------------------EDREQIRQGLEELQKV---LP---GGDTYMHEGFERASEQIYYE 99 (185)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHTC---CC---CSCCCHHHHHHHHHHHHHHH
T ss_pred ------------------------------------CCHHHHHHHHHHHhhh---cC---CCCccHHHHHHHHHHHHhhc
Confidence 0122345556666542 12 23478999999999977310
Q ss_pred -C--CCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCcc
Q 004238 290 -L--PGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQV 366 (766)
Q Consensus 290 -~--~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~ 366 (766)
. ......|+++++|.++.++ ..-..+.+..+.+.||.|..+.++ ..
T Consensus 100 ~~~~~~~~~~iillTDG~~~~~~-----------------------------~~~~~~~~~~~~~~gi~i~~igvg--~~ 148 (185)
T 3n2n_F 100 NRQGYRTASVIIALTDGELHEDL-----------------------------FFYSEREANRSRDLGAIVYAVGVK--DF 148 (185)
T ss_dssp HTTCBCEEEEEEEEECCCCCHHH-----------------------------HHHHHHHHHHHHHTTEEEEEEECS--SC
T ss_pred cccCCCCCcEEEEEcCCCCCCCc-----------------------------ccchHHHHHHHHHCCCEEEEEEec--cC
Confidence 0 0123467888888654321 001134667777888877776665 67
Q ss_pred ChhcchhhhhcccceEEEeCC
Q 004238 367 GVAEMKVAVEKTGGLVVLAES 387 (766)
Q Consensus 367 ~l~~l~~l~~~TGG~v~~~~~ 387 (766)
+-.+|..++.. +|.+|...+
T Consensus 149 ~~~~L~~iA~~-~~~~~~~~~ 168 (185)
T 3n2n_F 149 NETQLARIADS-KDHVFPVND 168 (185)
T ss_dssp CHHHHTTTSSS-GGGEEEHHH
T ss_pred CHHHHHHHhCC-CCCeEEecc
Confidence 88899999965 577776654
No 26
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.94 E-value=0.00013 Score=71.55 Aligned_cols=144 Identities=19% Similarity=0.161 Sum_probs=92.3
Q ss_pred EEEEEEEcccchH-------HHHHHHHHHHHHhcc---CCCCcEEEEEEECCe-EEEEEcCCCCCcceeEecCCcccchh
Q 004238 136 VFVFVLDTCMIEE-------ELGYARSELKRAIGL---LPDNAMVGLVTFGTQ-AHVHELGFSDMSKVYVFRGNKEISKD 204 (766)
Q Consensus 136 ~~vFvID~s~~~~-------~l~~~~~~l~~~l~~---lp~~~~VglItf~~~-V~~~~l~~~~~~~~~v~~g~~~~~~~ 204 (766)
..+|+||+|.++. +++..++.+...+.. ..++.+||||+|... -++-
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~---------------------- 61 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVL---------------------- 61 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEE----------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEe----------------------
Confidence 5799999999875 377777776654432 234579999999752 2211
Q ss_pred hHHhhhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHH
Q 004238 205 QVLEQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATG 284 (766)
Q Consensus 205 ~l~~~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ 284 (766)
.|+......+...|+++.+. ..+.+|.||..|..
T Consensus 62 -------------------------------------~plT~d~~~i~~~L~~l~~~---------g~t~l~~aL~~A~~ 95 (192)
T 2x5n_A 62 -------------------------------------STLTRDYGKFLSAMHDLPVR---------GNAKFGDGIQIAQL 95 (192)
T ss_dssp -------------------------------------EEEESCHHHHHHHHTTCCCC---------SCCCHHHHHHHHHH
T ss_pred -------------------------------------cCCCCCHHHHHHHHHcCCCC---------CCchHHHHHHHHHH
Confidence 01111123455666665431 24789999999999
Q ss_pred HhhccC-CCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecC
Q 004238 285 LLGACL-PGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASAL 363 (766)
Q Consensus 285 ll~~~~-~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~ 363 (766)
+++... +....||++|+++.-+.+ ..-..++++.+.+.||.|+++.++.
T Consensus 96 ~l~~~~~~~~~~riiil~~~~~~~~------------------------------~~~~~~~a~~lk~~gi~v~~Ig~G~ 145 (192)
T 2x5n_A 96 ALKHRENKIQRQRIVAFVGSPIVED------------------------------EKNLIRLAKRMKKNNVAIDIIHIGE 145 (192)
T ss_dssp HHHTCSCTTSEEEEEEEECSCCSSC------------------------------HHHHHHHHHHHHHTTEEEEEEEESC
T ss_pred HHHhccccCCCceEEEEEECCCCCC------------------------------chhHHHHHHHHHHCCCEEEEEEeCC
Confidence 998421 124568888886531110 0114568889999999999999987
Q ss_pred CccChhcchhhhhcc
Q 004238 364 DQVGVAEMKVAVEKT 378 (766)
Q Consensus 364 ~~~~l~~l~~l~~~T 378 (766)
+.-+-. |..+++.+
T Consensus 146 ~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 146 LQNESA-LQHFIDAA 159 (192)
T ss_dssp C---CH-HHHHHHHH
T ss_pred CCccHH-HHHHHHhc
Confidence 765556 88888884
No 27
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=97.92 E-value=0.0003 Score=72.75 Aligned_cols=176 Identities=11% Similarity=-0.022 Sum_probs=110.1
Q ss_pred CCcEEEEEEEcccchHH--H-HHHHHHHHHHhccCC---CCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhH
Q 004238 133 LSPVFVFVLDTCMIEEE--L-GYARSELKRAIGLLP---DNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQV 206 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~--l-~~~~~~l~~~l~~lp---~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l 206 (766)
.+.-++||||.|.++.. + +.+++.++..++.+. ++.+||||+|++.++..- .-..
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~-~l~~------------------ 77 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELI-RLGS------------------ 77 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEE-CTTS------------------
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEE-ecCC------------------
Confidence 45668999999999753 6 578999999998886 689999999998765421 1000
Q ss_pred HhhhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHh
Q 004238 207 LEQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLL 286 (766)
Q Consensus 207 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll 286 (766)
. ....+..+...|+.|+... .+ ...+.+|.||..|..++
T Consensus 78 --~----------------------------------~~~~~~~~~~~i~~l~~~~--~~---~G~T~~~~AL~~a~~~l 116 (266)
T 4hqo_A 78 --G----------------------------------QSIDKRQALSKVTELRKTY--TP---YGTTSMTAALDEVQKHL 116 (266)
T ss_dssp --H----------------------------------HHHCHHHHHHHHHHHHHHC--CC---CSCCCHHHHHHHHHHHH
T ss_pred --C----------------------------------CccCHHHHHHHHHHhhhcc--CC---CCCCCHHHHHHHHHHHH
Confidence 0 0001233455666664100 01 12578999999999988
Q ss_pred hcc--CCCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCC
Q 004238 287 GAC--LPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALD 364 (766)
Q Consensus 287 ~~~--~~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~ 364 (766)
... .++....|+++|+|.++.+ .-..+.+..+.+.||.|-.+.++.
T Consensus 117 ~~~~~r~~~~~~iIllTDG~~~d~-------------------------------~~~~~~a~~l~~~gi~i~~iGiG~- 164 (266)
T 4hqo_A 117 NDRVNREKAIQLVILMTDGVPNSK-------------------------------YRALEVANKLKQRNVRLAVIGIGQ- 164 (266)
T ss_dssp HTTCSCTTSEEEEEEEECSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEECSS-
T ss_pred hhccccCCCCeEEEEEccCCCCCc-------------------------------hHHHHHHHHHHHCCCEEEEEecCc-
Confidence 731 0122346788888865410 012345677778898877777654
Q ss_pred ccChhcchhhhhcc--cc--eEEEeCCCCchhhHHHHHHHHh
Q 004238 365 QVGVAEMKVAVEKT--GG--LVVLAESFGHSVFKDSFKRIFE 402 (766)
Q Consensus 365 ~~~l~~l~~l~~~T--GG--~v~~~~~f~~~~~~~~l~~~l~ 402 (766)
..+-..|..++... || .++++.+|+. +.+-+.+++.
T Consensus 165 ~~~~~~L~~iA~~~~~~g~~~~~~~~d~~~--L~~i~~~l~~ 204 (266)
T 4hqo_A 165 GINHQFNRLIAGCRPREPNCKFYSYADWNE--AVALIKPFIA 204 (266)
T ss_dssp SCCHHHHHHHHTCCTTCSSCTTEECSCHHH--HHHHHHHHHC
T ss_pred ccCHHHHHHhhCCCCCCCCCCeEEecCHHH--HHHHHHHHHh
Confidence 46666778888774 33 7777766542 3333333443
No 28
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.92 E-value=0.00015 Score=70.08 Aligned_cols=154 Identities=12% Similarity=0.142 Sum_probs=98.6
Q ss_pred CcEEEEEEEcccchH--HHHHHHHHHHHHhccC-CCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhh
Q 004238 134 SPVFVFVLDTCMIEE--ELGYARSELKRAIGLL-PDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQL 210 (766)
Q Consensus 134 ~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l-p~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l 210 (766)
|.-.+|+||.|.+.. .++.+++.++..++.+ +++.+||+|+|++.++.. +. +...-
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~-~~--------------------l~~~~ 60 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTE-FD--------------------FSDYV 60 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEE-EC--------------------HHHHH
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEE-Ec--------------------CcccC
Confidence 346899999999864 4888899999888888 456899999999877652 10 00000
Q ss_pred ccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHH-Hhhcc
Q 004238 211 GLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATG-LLGAC 289 (766)
Q Consensus 211 ~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~-ll~~~ 289 (766)
.+..+..+++.|+.. ...+.+|.||..|.. ++...
T Consensus 61 ------------------------------------~~~~~~~~~~~i~~~--------~g~T~~~~aL~~a~~~~~~~~ 96 (179)
T 1mjn_A 61 ------------------------------------KRKDPDALLKHVKHM--------LLLTNTFGAINYVATEVFREE 96 (179)
T ss_dssp ------------------------------------HHCCHHHHHTTCCCC--------CBCCCHHHHHHHHHHHTSSGG
T ss_pred ------------------------------------CHHHHHHHHHhcccC--------CCCChHHHHHHHHHHHhcccc
Confidence 001134566666542 125789999999985 55411
Q ss_pred ---CCCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCcc
Q 004238 290 ---LPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQV 366 (766)
Q Consensus 290 ---~~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~ 366 (766)
.++..-.|+++|+|.++.|.- . . ...|+.|-.+..+.+ .
T Consensus 97 ~g~r~~~~~~iillTDG~~~~~~~----------------~----~-----------------~~~~i~i~~igvG~~-~ 138 (179)
T 1mjn_A 97 LGARPDATKVLIIITDGEATDSGN----------------I----D-----------------AAKDIIRYIIGIGKH-F 138 (179)
T ss_dssp GTCCTTSEEEEEEEESSCCSSCSC----------------C----G-----------------GGTTSEEEEEEESGG-G
T ss_pred cCCCCCCCeEEEEEcCCCCCCCcc----------------h----H-----------------HHCCCEEEEEEcccc-c
Confidence 011223588899998775420 0 0 134676666655533 3
Q ss_pred C----hhcchhhhhcccc-eEEEeCCCCc
Q 004238 367 G----VAEMKVAVEKTGG-LVVLAESFGH 390 (766)
Q Consensus 367 ~----l~~l~~l~~~TGG-~v~~~~~f~~ 390 (766)
+ ..+|..++..+|| .+|..++|..
T Consensus 139 ~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 167 (179)
T 1mjn_A 139 QTKESQETLHKFASKPASEFVKILDTFEK 167 (179)
T ss_dssp CSHHHHHTTGGGSCSCHHHHEEEESSGGG
T ss_pred cccccHHHHHHHhCCccHhcEEEeCCHHH
Confidence 3 3789999999987 5777777653
No 29
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.77 E-value=0.00053 Score=67.45 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=41.8
Q ss_pred CCcEEEEEEEcccchH--HHHHHHHHHHHHhccC---CCCcEEEEEEECCeEEE
Q 004238 133 LSPVFVFVLDTCMIEE--ELGYARSELKRAIGLL---PDNAMVGLVTFGTQAHV 181 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l---p~~~~VglItf~~~V~~ 181 (766)
.+--.+|+||.|.+.. .++.+++.++..++.+ +++.+||+|+|++.++.
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~ 73 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTV 73 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEE
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccE
Confidence 5567999999999874 4888999999999888 57899999999987665
No 30
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=97.61 E-value=0.00016 Score=63.37 Aligned_cols=84 Identities=13% Similarity=0.069 Sum_probs=61.7
Q ss_pred cccceeeccCC--CCcccccccccccCCeEEEEeCCcEEEEEECCchhHHhhcCCCCChhhhHHHHHhhCcHHHHHHHH-
Q 004238 624 QPSLISYSFNS--LPQPALLDVASIAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELII- 700 (766)
Q Consensus 624 yP~L~~~~~~~--~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~i~- 700 (766)
.|+||.+.-.. ....++++.++|.++.+||||+|..||+|+|+... ..| . . .....|+.|.
T Consensus 2 ~~rL~~v~g~~~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~---------~~E--k-~----~A~~~a~~i~~ 65 (104)
T 1kcq_A 2 VQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSN---------RYE--R-L----KATQVSKGIRD 65 (104)
T ss_dssp CCEEEEEEESSSEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCC---------HHH--H-H----HHHHHHHHHHH
T ss_pred CcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCC---------HHH--H-H----HHHHHHHHHHh
Confidence 47888887433 24568899999999999999999999999999743 122 1 1 1223556665
Q ss_pred hcCCCCcEEEEEeCCCChHHHHH
Q 004238 701 RDRFPVPRLVVCDQHGSQARFLL 723 (766)
Q Consensus 701 ~~R~p~p~~~~~~~g~s~~r~l~ 723 (766)
.+|.....+.++++|...+.||.
T Consensus 66 ~er~~~~~i~~v~eG~E~~~Fw~ 88 (104)
T 1kcq_A 66 NERSGRARVHVSEEGTEPEAMLQ 88 (104)
T ss_dssp HTSTTCSEEEEEETTCCCHHHHH
T ss_pred hccCCCCcEEEEeCCCCCHHHHH
Confidence 35777788999999987777764
No 31
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.60 E-value=0.00099 Score=64.18 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=89.1
Q ss_pred CCcEEEEEEEcccchH--HHHHHHHHHHHHhccCC---CCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHH
Q 004238 133 LSPVFVFVLDTCMIEE--ELGYARSELKRAIGLLP---DNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVL 207 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp---~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~ 207 (766)
.+.-++||||.|.++. +++.+++.++..++.++ ++.+||+|+|++.++.. +.
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~-~~---------------------- 72 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQ-WD---------------------- 72 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEE-EC----------------------
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEE-Ee----------------------
Confidence 4678999999999874 48888999998888875 45899999999876542 10
Q ss_pred hhhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhh
Q 004238 208 EQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLG 287 (766)
Q Consensus 208 ~~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~ 287 (766)
+++. . ...++.+...|+.++. .. ..+.+|.||..|...+.
T Consensus 73 ----l~~~----------------------~------~~~~~~~~~~i~~l~~-----~~---g~T~~~~aL~~a~~~l~ 112 (178)
T 2xgg_A 73 ----LQSP----------------------N------AVDKQLAAHAVLDMPY-----KK---GSTNTSDGLKACKQILF 112 (178)
T ss_dssp ----TTSG----------------------G------GSCHHHHHHHHHHCCC-----CC---CCCCHHHHHHHHHHHHH
T ss_pred ----CCCC----------------------C------ccCHHHHHHHHHhCCC-----CC---CCccHHHHHHHHHHHhc
Confidence 0000 0 0012335566677653 11 25789999999999763
Q ss_pred cc----CCCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecC
Q 004238 288 AC----LPGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASAL 363 (766)
Q Consensus 288 ~~----~~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~ 363 (766)
.. .++....|+++++|.++.|. -..+.+..+.+.||.|..+.++.
T Consensus 113 ~~~~g~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~l~~~gi~v~~igvG~ 161 (178)
T 2xgg_A 113 TGSRPGREHVPKLVIGMTDGESDSDF-------------------------------RTVRAAKEIRELGGIVTVLAVGH 161 (178)
T ss_dssp HCCCTTCTTSCEEEEEEESSCCCHHH-------------------------------HHSHHHHHHHHTTCEEEEEECC-
T ss_pred CcccCCCCCCCEEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEcCC
Confidence 21 11234578889998765431 12345667777888877776653
Q ss_pred CccChhcc
Q 004238 364 DQVGVAEM 371 (766)
Q Consensus 364 ~~~~l~~l 371 (766)
.+|-..|
T Consensus 162 -~~~~~~l 168 (178)
T 2xgg_A 162 -YVAAALV 168 (178)
T ss_dssp --------
T ss_pred -cCCHHHH
Confidence 3444333
No 32
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.59 E-value=6.8e-05 Score=89.24 Aligned_cols=189 Identities=16% Similarity=0.133 Sum_probs=109.7
Q ss_pred CcEEEEEEEcccchH--HHHHHHHHHHHHhccCC---CCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHh
Q 004238 134 SPVFVFVLDTCMIEE--ELGYARSELKRAIGLLP---DNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLE 208 (766)
Q Consensus 134 ~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp---~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~ 208 (766)
+.-++||||.|.++. .++.++++++..++.++ .+.+||||+|++...+.- .
T Consensus 243 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~-~----------------------- 298 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWV-K----------------------- 298 (741)
T ss_dssp EEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE-C-----------------------
T ss_pred ceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeE-e-----------------------
Confidence 456999999999973 38888888888887764 468999999998655421 0
Q ss_pred hhccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhc
Q 004238 209 QLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGA 288 (766)
Q Consensus 209 ~l~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~ 288 (766)
+++. -...++.+.+.|++|+... ......+.+|.||..|...+..
T Consensus 299 ---l~~~----------------------------~~~~~~~~~~~i~~l~~~~----~~~~ggT~~~~aL~~a~~~l~~ 343 (741)
T 3hrz_D 299 ---VSEA----------------------------DSSNADWVTKQLNEINYED----HKLKSGTNTKKALQAVYSMMSW 343 (741)
T ss_dssp ---TTSG----------------------------GGGCHHHHHHHHTTCCGGG----GSSSCCCCHHHHHHHHHHHHCC
T ss_pred ---eccc----------------------------CCcCHHHHHHHHHhccccc----ccCCCChHHHHHHHHHHHHHhh
Confidence 0000 0001233455566665210 0013457899999999999831
Q ss_pred cCC-CCc------cEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEe
Q 004238 289 CLP-GTG------ARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFAS 361 (766)
Q Consensus 289 ~~~-~~g------GrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~ 361 (766)
... ..+ -.|+++|+|.++.|..-.... +.+++..+ ....++.+.+.||.|..+.+
T Consensus 344 ~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~---~~i~~~~~---------------~~~~a~~~~~~gi~i~~igv 405 (741)
T 3hrz_D 344 PDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVI---DEIRDLLY---------------IGKDRKNPREDYLDVYVFGV 405 (741)
T ss_dssp C--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHH---HHHHHHTT---------------CSSCTTCCCGGGEEEEEEEC
T ss_pred hhhccccchhccCeEEEEECCCccccCCCchHHH---HHHHHHhh---------------cccccccccccCeeEEEEeC
Confidence 100 111 248899999988774111100 00000000 01112233455666666655
Q ss_pred cCCccChhcchhhhhcccce--EEEeCCCCchhhHHHHHHHHh
Q 004238 362 ALDQVGVAEMKVAVEKTGGL--VVLAESFGHSVFKDSFKRIFE 402 (766)
Q Consensus 362 ~~~~~~l~~l~~l~~~TGG~--v~~~~~f~~~~~~~~l~~~l~ 402 (766)
+. .++-.+|..|+..+||. ++..++++ .+.+.+.+++.
T Consensus 406 G~-~~~~~~L~~ia~~~~g~~~~~~~~~~~--~L~~~~~~l~~ 445 (741)
T 3hrz_D 406 GP-LVNQVNINALASKKDNEQHVFKVKDME--NLEDVFYQMID 445 (741)
T ss_dssp SS-SCCHHHHHHHSCCCTTCCCEECBSSHH--HHHHHHHHHHH
T ss_pred CC-cCCHHHHHHHhcCCCCcceEEEeCCHH--HHHHHHHHhhc
Confidence 43 47888999999999995 66666543 34444444443
No 33
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.12 E-value=0.00072 Score=83.26 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=103.3
Q ss_pred CcEEEEEEEcccchH--HHHHHHHHHHHHhccCCCC-cEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhh
Q 004238 134 SPVFVFVLDTCMIEE--ELGYARSELKRAIGLLPDN-AMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQL 210 (766)
Q Consensus 134 ~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp~~-~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l 210 (766)
+.-.+||||.|.+.. .++.+++.++..++.+.++ .+||+|+|++.++.. +.- .+.-
T Consensus 130 ~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~-~~l--------------------t~~~ 188 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTH-FTF--------------------EEFR 188 (1095)
T ss_dssp CEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEE-ECS--------------------HHHH
T ss_pred CccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEE-ecC--------------------cccC
Confidence 456899999999864 4899999999999988754 899999999876653 110 0000
Q ss_pred ccccCcccccCCCcccCCCCCCCCCCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHh-hcc
Q 004238 211 GLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLL-GAC 289 (766)
Q Consensus 211 ~~~d~~~~~~~g~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll-~~~ 289 (766)
+. . .+...++.|+.. ...+.+|.||..|...+ ...
T Consensus 189 ---~~----------------------~-----------~l~~ai~~i~~~--------gG~T~~g~AL~~a~~~lf~~~ 224 (1095)
T 3k6s_A 189 ---RS----------------------S-----------NPLSLLASVHQL--------QGFTYTATAIQNVVHRLFHAS 224 (1095)
T ss_dssp ---SC----------------------S-----------CGGGGTTTCCCC--------CSCBCHHHHHHHHHTTTTSTT
T ss_pred ---CH----------------------H-----------HHHHHHhhhhcc--------cCCChHHHHHHHHHHhhcccc
Confidence 00 0 012233444331 12578999999998744 210
Q ss_pred C---CCCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCC--
Q 004238 290 L---PGTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALD-- 364 (766)
Q Consensus 290 ~---~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~-- 364 (766)
. ++..-.|+++|+|.++..+. -+.+.+.++.+.||.+-.+..+..
T Consensus 225 ~g~R~~~~kviIllTDG~~~~d~~------------------------------~~~~~a~~~r~~GI~i~aIGVG~~~~ 274 (1095)
T 3k6s_A 225 YGARRDAAKILIVITDGKKEGDSL------------------------------DYKDVIPMADAAGIIRYAIGVGLAFQ 274 (1095)
T ss_dssp TTCCSSSEEEEEEEESSCCBSCSS------------------------------CHHHHHHHHHHHCEEECCEEBSSGGG
T ss_pred ccCCCCCCeEEEEEeCCCcCCCch------------------------------hHHHHHHHHHHCCCEEEEEecccccc
Confidence 0 01112478888886542110 023456667777887666666544
Q ss_pred -ccChhcchhhhhcccc-eEEEeCCCCc
Q 004238 365 -QVGVAEMKVAVEKTGG-LVVLAESFGH 390 (766)
Q Consensus 365 -~~~l~~l~~l~~~TGG-~v~~~~~f~~ 390 (766)
.++..+|..+|..++| .++..++|..
T Consensus 275 ~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 275 NRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp STTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred cccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 2588999999999887 6777777754
No 34
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=97.12 E-value=0.00051 Score=61.20 Aligned_cols=85 Identities=21% Similarity=0.263 Sum_probs=60.7
Q ss_pred hcccceeeccCC--CCcccccccccccCCeEEEEeCCcEEEEEECCchhHHhhcCCCCChhhhHHHHHhhCcHHHHHHHH
Q 004238 623 IQPSLISYSFNS--LPQPALLDVASIAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELII 700 (766)
Q Consensus 623 iyP~L~~~~~~~--~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~i~ 700 (766)
-.|+||.+.-+. ....++++.++|.++.+||||+|..||+|+|+... ..| . . .....|+.|.
T Consensus 11 ~~~rL~~v~G~~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss---------~~E--k-~----~A~~~a~~i~ 74 (114)
T 1svq_A 11 YKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSS---------PQE--K-N----KAAEVARAID 74 (114)
T ss_dssp CCEEEEEEECTTSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCC---------HHH--H-H----HHHHHHHHHH
T ss_pred CCcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCC---------HHH--H-H----HHHHHHHHhh
Confidence 358999887432 24568899999999999999999999999999742 122 1 1 1123555665
Q ss_pred hcCCCCcEEEEEeCCC--ChHHHHH
Q 004238 701 RDRFPVPRLVVCDQHG--SQARFLL 723 (766)
Q Consensus 701 ~~R~p~p~~~~~~~g~--s~~r~l~ 723 (766)
.+|.....+.++++|. ..+.||.
T Consensus 75 ~er~g~~~i~vv~eg~~~E~~~Fw~ 99 (114)
T 1svq_A 75 AERKGLPKVEVFCETDSDIPAEFWK 99 (114)
T ss_dssp HHHTTCSEEEECCCCTTCCCHHHHH
T ss_pred hccCCCccEEEEeCCCcCCcHHHHH
Confidence 5566667889999998 5566763
No 35
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=96.77 E-value=0.0051 Score=70.51 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=35.9
Q ss_pred cEEEEEEEcccchH--------HHHHHHHHHHHHhcc---CCCCcEEEEEEECCe
Q 004238 135 PVFVFVLDTCMIEE--------ELGYARSELKRAIGL---LPDNAMVGLVTFGTQ 178 (766)
Q Consensus 135 p~~vFvID~s~~~~--------~l~~~~~~l~~~l~~---lp~~~~VglItf~~~ 178 (766)
-..+|+||+|.++. .|+.+++++...+.. ..++-+||||+|++.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~ 62 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTD 62 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCS
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccC
Confidence 46899999999863 488888888888873 556789999999864
No 36
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=96.46 E-value=0.11 Score=60.46 Aligned_cols=279 Identities=11% Similarity=0.084 Sum_probs=134.0
Q ss_pred CCcEEEEEEEcccchHH-H---HHHHHHHHHHhccCCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHh
Q 004238 133 LSPVFVFVLDTCMIEEE-L---GYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLE 208 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~-l---~~~~~~l~~~l~~lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~ 208 (766)
.|.=.+|++|+|.++.. + +.+...|...|..+..+.|+||.+|-+.... ...... ++
T Consensus 110 ~pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~-P~~~~~------------------p~ 170 (690)
T 3fcs_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVS-PYMYIS------------------PP 170 (690)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSST-TTSCCC------------------ST
T ss_pred CCccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccC-CccccC------------------hh
Confidence 45668999999999865 4 4444555555566678899999999765321 000000 00
Q ss_pred hhcccc-CcccccCCCcccCCCCCCCCCC-c-ccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHH--
Q 004238 209 QLGLSA-SGRRAAGGYQKAAVPNAFPNSG-V-SRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVAT-- 283 (766)
Q Consensus 209 ~l~~~d-~~~~~~~g~~~~~~~~~~~~~p-~-~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~-- 283 (766)
.++-.. .+.. ..-.| . -+-.+++.+......+.+..+.-. .+...|+..+-+.+++|+
T Consensus 171 ~~~~~pc~~~~-------------~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~is----gn~D~PE~g~dAl~qa~~c~ 233 (690)
T 3fcs_B 171 EALENPCYDMK-------------TTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVS----RNRDAPEGGFDAIMQATVCD 233 (690)
T ss_dssp TTTTCTTSSSS-------------SCCCCCCSEEEEEEEESCHHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCH
T ss_pred hhccCCCcCCC-------------CCCCCCccceeecccCCCHHHHHHHhhceecc----CCCCCCchHHHHHHHHhhcc
Confidence 010000 0000 01111 1 122356666554455555554321 223446655655556663
Q ss_pred HHhhccCCCCccEEEEEeCCCCC--CCCcccccCCCCCCccCCCCCCcCcCccchhHH-H--HHHHHHHHHHHcCcEEEE
Q 004238 284 GLLGACLPGTGARIVALVGGPCT--EGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAV-K--FYDGLAKQLVSQGHVLDL 358 (766)
Q Consensus 284 ~ll~~~~~~~gGrIi~f~sg~pt--~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~-~--fY~~la~~~~~~~isvdl 358 (766)
.-+. .+...-|+|+|++-.+. -|-|++...-.++-.+-|.+... .|..... + --.+|...+.+++|.+ |
T Consensus 234 ~~ig--Wr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~---~y~~s~~~DypSi~ql~~~l~~~~i~~-i 307 (690)
T 3fcs_B 234 EKIG--WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDN---HYSASTTMDYPSLGLMTEKLSQKNINL-I 307 (690)
T ss_dssp HHHT--CCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTC---BBGGGGTSCCCCHHHHHHHHHHTTCEE-E
T ss_pred cccC--CCCCceEEEEEECCCccccCCCccccceecCCCcceeecCCC---ccccccccCCCCHHHHHHHHHHcCCeE-E
Confidence 3333 33456799888876554 46666654433333334433111 1111111 1 1356777777888854 6
Q ss_pred EEecCCccChhcchhhhh-cccceEEEeCCCCchhhHHHHHHHHhhccccccceeeeEEEEEe-cCCceEEEEEcCcccc
Q 004238 359 FASALDQVGVAEMKVAVE-KTGGLVVLAESFGHSVFKDSFKRIFEDGEQSLGLCFNGALEIIC-SKDIKIQGIIGPCTSL 436 (766)
Q Consensus 359 f~~~~~~~~l~~l~~l~~-~TGG~v~~~~~f~~~~~~~~l~~~l~~~~~~~~~~~~a~l~vr~-S~gl~v~~~~G~~~~~ 436 (766)
|+......+++ ..|+. .+|+.+-.... +.+...+.+...+.+ +.....|+... +++++|+-.- .+...
T Consensus 308 favt~~~~~~y--~~l~~~i~~s~v~~l~~-dSsni~~li~~~y~~------i~s~v~l~~~~~p~~~~v~~~s-~C~~~ 377 (690)
T 3fcs_B 308 FAVTENVVNLY--QNYSELIPGTTVGVLSM-DSSNVLQLIVDAYGK------IRSKVELEVRDLPEELSLSFNA-TCLNN 377 (690)
T ss_dssp EEEEGGGHHHH--HHHHHHSTTCEEEEECT-TCTTHHHHHHHHHHH------HTTCEEEEEESCCTTEEEEEEE-ECSTT
T ss_pred EEEeCCchhhH--HHHHhhcCCceeeeecc-ccHHHHHHHHHHHHh------hhcceeeeccCCCCcceEEEEe-ecCCC
Confidence 66555555443 34443 34555555443 223333333333332 23445555543 5677665332 11110
Q ss_pred cccccCCCccceeeecCCCCceEEEEEEecCC
Q 004238 437 EKVRLRGEYYAWKMCGLDKSTCLTVFFDLSSS 468 (766)
Q Consensus 437 ~~~~g~~~~~~~~l~~~~~~~s~~~~f~~~~~ 468 (766)
...+..-.-.++....++.|.++++-.
T Consensus 378 -----~~~~~~~~C~~v~~g~~v~F~v~v~~~ 404 (690)
T 3fcs_B 378 -----EVIPGLKSCMGLKIGDTVSFSIEAKVR 404 (690)
T ss_dssp -----CEEETCCEECSCCTTCEEEEEEEEEEC
T ss_pred -----CcccCCCcccccccCCeEEEEEEEEee
Confidence 000111134456666667776666543
No 37
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=96.24 E-value=1.9 Score=47.31 Aligned_cols=278 Identities=11% Similarity=0.094 Sum_probs=139.5
Q ss_pred CCcEEEEEEEcccchHH----HHHHHHHHHHHhccCCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhh-HH
Q 004238 133 LSPVFVFVLDTCMIEEE----LGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQ-VL 207 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~-l~ 207 (766)
.|.=.+|++|+|.++.. ++.+...|...|..+..+.|+||.+|-+..-. ...... .+. +.
T Consensus 110 ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~-P~~~~~--------------p~~~l~ 174 (472)
T 3t3p_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVS-PYMYIS--------------PPEALE 174 (472)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSST-TTSCCC--------------SHHHHH
T ss_pred CCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccC-ccccCC--------------hhhhhc
Confidence 45668999999999865 55566666677777778999999999654311 000000 011 11
Q ss_pred hhhccccCcccccCCCcccCCCCCCCCCC-c-ccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHH--
Q 004238 208 EQLGLSASGRRAAGGYQKAAVPNAFPNSG-V-SRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVAT-- 283 (766)
Q Consensus 208 ~~l~~~d~~~~~~~g~~~~~~~~~~~~~p-~-~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~-- 283 (766)
... ...+ ..-.| . -+...++.+......+.+.++.-. .+...|+..+-+-+++|.
T Consensus 175 nPc--~~~~---------------~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iS----Gn~D~PEgg~dAl~qaavC~ 233 (472)
T 3t3p_B 175 NPC--YDMK---------------TTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVS----RNRDAPEGGFDAIMQATVCD 233 (472)
T ss_dssp CTT--TTTT---------------SCCCCCCSEEEEEEEESCHHHHHHHHHHCCCC----CCSSSSBCHHHHHHHHHHCH
T ss_pred CCC--cccc---------------cCCCCCcceeEeeccCCCHHHHHHHHhhcccc----CCCCCCchHHHHHHHHhcch
Confidence 100 0000 01111 1 123456666656667777775432 233456666665566664
Q ss_pred HHhhccCCCCccEEEEEeCCCCC--CCCcccccCCCCCCccCCCCCCcCcCccchhHH----HHHHHHHHHHHHcCcEEE
Q 004238 284 GLLGACLPGTGARIVALVGGPCT--EGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAV----KFYDGLAKQLVSQGHVLD 357 (766)
Q Consensus 284 ~ll~~~~~~~gGrIi~f~sg~pt--~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~----~fY~~la~~~~~~~isvd 357 (766)
.-+. .+...-|+++|++-.+. .|-|++...-.++-.+.|-+-.. .+..+. .-..+|...+.+++|.+
T Consensus 234 ~~ig--WR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~----~Y~~s~~~DYPSv~ql~~~l~e~nI~~- 306 (472)
T 3t3p_B 234 EKIG--WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDN----HYSASTTMDYPSLGLMTEKLSQKNINL- 306 (472)
T ss_dssp HHHT--CCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTC----BBTTTTTSCCCCHHHHHHHHHHTTCEE-
T ss_pred hhcC--CCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECCCC----cccccccCCCCCHHHHHHHHHhcCccE-
Confidence 3333 33456799998866544 57777765433343444533211 111111 11345666777777655
Q ss_pred EEEecCCccChhcchhhhhcc-cceEEEeCCCCchhhHHHHHHHHhhccccccceeeeEEEEEe-cCCceEEEEEcCccc
Q 004238 358 LFASALDQVGVAEMKVAVEKT-GGLVVLAESFGHSVFKDSFKRIFEDGEQSLGLCFNGALEIIC-SKDIKIQGIIGPCTS 435 (766)
Q Consensus 358 lf~~~~~~~~l~~l~~l~~~T-GG~v~~~~~f~~~~~~~~l~~~l~~~~~~~~~~~~a~l~vr~-S~gl~v~~~~G~~~~ 435 (766)
||+.+....+++ ..|+..- |+.+-.... +.+...+-+.....+ ......|+... +++++|+-.- .+..
T Consensus 307 IFAVt~~~~~~Y--~~L~~~ip~s~vg~L~~-dSsNiv~LI~~aY~~------i~s~V~l~~~~~p~~l~v~y~s-~C~~ 376 (472)
T 3t3p_B 307 IFAVTENVVNLY--QNYSELIPGTTVGVLSM-DSSNVLQLIVDAYGK------IRSKVELEVRDLPEELSLSFNA-TCLN 376 (472)
T ss_dssp EEEECGGGHHHH--HHHHHTSTTCEEEECCT-TSTTHHHHHHHHHHH------HTTCEEEEEESCCTTEEEEEEE-EETT
T ss_pred EEEEeccchhHH--HHHHHhCCCceeeeccc-cchhHHHHHHHHHHH------hheEEEEeeCCCCCcEEEEEEe-ECCC
Confidence 777766655443 3444433 333333332 223333333333322 23445555543 5667665321 1111
Q ss_pred ccccccCCCccceeeecCCCCceEEEEEEecCC
Q 004238 436 LEKVRLRGEYYAWKMCGLDKSTCLTVFFDLSSS 468 (766)
Q Consensus 436 ~~~~~g~~~~~~~~l~~~~~~~s~~~~f~~~~~ 468 (766)
.. ..+..-+..++....++.|..+++..
T Consensus 377 ~~-----~~~~~~~C~~v~ig~~v~F~v~v~~~ 404 (472)
T 3t3p_B 377 NE-----VIPGLKSCMGLKIGDTVSFSIEAKVR 404 (472)
T ss_dssp TE-----EEETCCEECSCCTTCEEEEEEEEEEC
T ss_pred CC-----ccCCCccCCCcccCCEEEEEEEEEec
Confidence 00 00111235556667777777777643
No 38
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=95.77 E-value=0.0083 Score=65.31 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=52.1
Q ss_pred hcccceeeccC-CC--Ccc-cccccccccCCeEEEEeCCcEEEEEECCchhHHhhcCCCCChhhhHHHHHhhCcHHHHHH
Q 004238 623 IQPSLISYSFN-SL--PQP-ALLDVASIAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAEL 698 (766)
Q Consensus 623 iyP~L~~~~~~-~~--p~~-~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 698 (766)
..|+||.++.. +. ... .+++.+.|.++.+||||+|..||||+|+.+. ..|. +..++ .|++
T Consensus 281 ~~~rLf~~s~~~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as---------~~Er---~~Al~----~A~~ 344 (398)
T 3fg7_A 281 ITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHAN---------EEEK---KAAAT----TAQE 344 (398)
T ss_dssp CCCEEEEEECTTSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCC---------HHHH---HHHHH----HHHH
T ss_pred ccCeeEEEEcCCCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCC---------HHHH---HHHHH----HHHH
Confidence 58999988743 21 122 2588889999999999999999999999753 1221 23333 4445
Q ss_pred HHh----cCCCCcEEEEEeCCCCh
Q 004238 699 IIR----DRFPVPRLVVCDQHGSQ 718 (766)
Q Consensus 699 i~~----~R~p~p~~~~~~~g~s~ 718 (766)
.++ .|.+...+.++.+|.-.
T Consensus 345 yi~~~~~~r~~~tpi~~V~eG~Ep 368 (398)
T 3fg7_A 345 YLKTHPSGRDPETPIIVVKQGHEP 368 (398)
T ss_dssp HHHHSSSSCCTTCCEEEEETTCCC
T ss_pred HHHhCcccCCCCCCEEEEcCCCCC
Confidence 443 45443345677777544
No 39
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=95.71 E-value=0.013 Score=62.79 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=54.7
Q ss_pred hcccceeecc-CCC--Cccc----ccccccccCCeEEEEeCC--cEEEEEECCchhHHhhcCCCCChhhhHHHHHhhCcH
Q 004238 623 IQPSLISYSF-NSL--PQPA----LLDVASIAADRILLLDTY--FSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPH 693 (766)
Q Consensus 623 iyP~L~~~~~-~~~--p~~~----~Ls~~~l~~~~i~llD~g--~~i~i~~G~~v~~~~~~g~~~~~~~~~~~~~l~~~~ 693 (766)
-.|+||.++. .+. ...+ +++.+.|.++.+||||+| ..||||+|+.+. ..|- +..+
T Consensus 246 ~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~---------~~er---~~A~---- 309 (347)
T 1j72_A 246 QAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKAN---------EKER---QAAL---- 309 (347)
T ss_dssp CCCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCC---------HHHH---HHHH----
T ss_pred cCCEEEEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCC---------HHHH---HHHH----
Confidence 4699999873 232 2234 889999999999999999 999999999753 1221 2222
Q ss_pred HHHHHHHh--cCCCCcEEEEEeCCCCh
Q 004238 694 DDAELIIR--DRFPVPRLVVCDQHGSQ 718 (766)
Q Consensus 694 ~~~~~i~~--~R~p~p~~~~~~~g~s~ 718 (766)
..|++++. .|.+...+.++.+|.-.
T Consensus 310 ~~A~~y~~~~~rp~~~~i~~v~eG~Ep 336 (347)
T 1j72_A 310 QVAEGFISRMQYAPNTQVEILPQGRES 336 (347)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEETTCCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCCC
Confidence 34555442 45556677888888643
No 40
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=95.68 E-value=0.01 Score=63.49 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=50.2
Q ss_pred hcccceeeccC-CC--Cccc--ccccccccCCeEEEEeCCcEEEEEECCchhHHhhcCCCCChhhhHHHHHhhCcHHHHH
Q 004238 623 IQPSLISYSFN-SL--PQPA--LLDVASIAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAE 697 (766)
Q Consensus 623 iyP~L~~~~~~-~~--p~~~--~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 697 (766)
..|+||.++.. +. ...+ +++.+.|.++.+||||+|..||||+|+.+.. .|. +..+ ..|+
T Consensus 227 ~~~rLf~~s~~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~---------~er---~~A~----~~A~ 290 (344)
T 2fh1_A 227 HPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQE---------EEK---TEAL----TSAK 290 (344)
T ss_dssp CCCEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCH---------HHH---HHHH----HHHH
T ss_pred cCCEEEEEEcCCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCCH---------HHH---HHHH----HHHH
Confidence 67999998742 21 1222 6788899999999999999999999997531 221 2233 2445
Q ss_pred HHHh----cCCCCcEEEEEeCCCCh
Q 004238 698 LIIR----DRFPVPRLVVCDQHGSQ 718 (766)
Q Consensus 698 ~i~~----~R~p~p~~~~~~~g~s~ 718 (766)
+.+. .|.+...+.++.+|.-.
T Consensus 291 ~y~~~~~~~r~~~t~i~~V~eG~Ep 315 (344)
T 2fh1_A 291 RYIETDPANRDRRTPITVVKQGFEP 315 (344)
T ss_dssp HHHHTC-------CCEEEEETTCCC
T ss_pred HHHHhCccCCCCCCcEEEEcCCCCC
Confidence 5543 35444456777777544
No 41
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.38 E-value=0.069 Score=53.43 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=38.8
Q ss_pred CCcEEEEEEEcccchHH-HHHHHHHHHHHhccCC---CCcEEEEEEECCe
Q 004238 133 LSPVFVFVLDTCMIEEE-LGYARSELKRAIGLLP---DNAMVGLVTFGTQ 178 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~-l~~~~~~l~~~l~~lp---~~~~VglItf~~~ 178 (766)
.|.-++|+||+|.++.. ++.++++++..+..++ ++.+||+|+|+..
T Consensus 133 ~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 133 VALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp SCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 45678999999999754 9999999999988765 4689999999864
No 42
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=95.33 E-value=1.5 Score=48.34 Aligned_cols=281 Identities=11% Similarity=0.082 Sum_probs=138.0
Q ss_pred CCcEEEEEEEcccchHH----HHHHHHHHHHHhccCCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHh
Q 004238 133 LSPVFVFVLDTCMIEEE----LGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLE 208 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~ 208 (766)
.|-=.+|++|+|.++.. ++.+...|...|..+..+.|+||.+|-+..-. ..... +.+++..
T Consensus 131 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~-P~~~~--------------~p~~l~~ 195 (503)
T 3v4v_B 131 YPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVL-PFVST--------------VPSKLRH 195 (503)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSST-TTSCC--------------CHHHHHC
T ss_pred CceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccC-CcccC--------------CHHHhcC
Confidence 45668999999999865 55556666677777888999999999654321 00100 0111111
Q ss_pred hhccccCcccccCCCcccCCCCCCCCCC-c-ccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHH--H
Q 004238 209 QLGLSASGRRAAGGYQKAAVPNAFPNSG-V-SRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVAT--G 284 (766)
Q Consensus 209 ~l~~~d~~~~~~~g~~~~~~~~~~~~~p-~-~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~--~ 284 (766)
.. .+.+ ..-.| . -+-..++.+......+.+....-. .+...|+..+.+-+++|+ .
T Consensus 196 PC--~~~~---------------~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iS----GnlD~PEggfDAlmQaavC~~ 254 (503)
T 3v4v_B 196 PC--PTRL---------------ERCQSPFSFHHVLSLTGDAQAFEREVGRQSVS----GNLDSPEGGFDAILQAALCQE 254 (503)
T ss_dssp CS--SCSS---------------SCCCCCCSEEEEEEEESCSHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHH
T ss_pred CC--cCCC---------------CCCCCCcceEEEEEecCCHHHHHHHHhhcCcc----CCCCCCchHHHHHHHHhhccc
Confidence 00 0000 00111 1 122456665544455555554321 223446666665566664 3
Q ss_pred HhhccCCCCccEEEEEeCCCCC--CCCcccccCCCCCCccCCCCCCcCcCccchhHH----HHHHHHHHHHHHcCcEEEE
Q 004238 285 LLGACLPGTGARIVALVGGPCT--EGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAV----KFYDGLAKQLVSQGHVLDL 358 (766)
Q Consensus 285 ll~~~~~~~gGrIi~f~sg~pt--~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~----~fY~~la~~~~~~~isvdl 358 (766)
-+. .++ ..|+++|++-.+. .|-|++...-.++-.+.|-+... .+..+. .-..+|...+.+++|.+ |
T Consensus 255 ~Ig--WR~-a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~~----~Yt~s~~~DYPSv~ql~~kL~ennI~~-I 326 (503)
T 3v4v_B 255 QIG--WRN-VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNG----LYSRSTEFDYPSVGQVAQALSAANIQP-I 326 (503)
T ss_dssp HHT--CCS-SEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCTTS----BBGGGGGSCCCCHHHHHHHHHHHTEEE-E
T ss_pred ccC--CCc-ceEEEEEECCCCcCcCCCccccceecCCCCCeEECCCC----ccccccccCCCCHHHHHHHHHhcCCeE-E
Confidence 343 234 6799998865544 57777655433344445533211 111111 11346667777788854 6
Q ss_pred EEecCCccChhcchhhhhcc-cceEEEeCCCCchhhHHHHHHHHhhccccccceeeeEEEEEe-cCCceEEEEEcCcccc
Q 004238 359 FASALDQVGVAEMKVAVEKT-GGLVVLAESFGHSVFKDSFKRIFEDGEQSLGLCFNGALEIIC-SKDIKIQGIIGPCTSL 436 (766)
Q Consensus 359 f~~~~~~~~l~~l~~l~~~T-GG~v~~~~~f~~~~~~~~l~~~l~~~~~~~~~~~~a~l~vr~-S~gl~v~~~~G~~~~~ 436 (766)
|+......+++ ..|++.- |+.+-.... +.+...+-+.....+ ......|+... +++++|+-.- .+...
T Consensus 327 FAVt~~~~~~Y--~~L~~~ip~s~vg~Ls~-dSsNiv~LI~~aY~~------i~S~V~l~~~~~p~~l~v~y~s-~C~~~ 396 (503)
T 3v4v_B 327 FAVTSAALPVY--QELSKLIPKSAVGELSE-DSSNVVQLIMDAYNS------LSSTVTLEHSSLPPGVHISYES-QCEGP 396 (503)
T ss_dssp EEECSSSHHHH--HHHHTTSTTCEEEECCT-TSCTHHHHHHHHHHH------HHTCEEEECCCCCTTEEEEBCE-ECSSS
T ss_pred EEEcccchhHH--HHHHHhCCCceeeEccc-cchhHHHHHHHHHHH------hheEEEEecCCCCCceEEEEEE-ecCCC
Confidence 88777665543 3444443 333333332 233333333322222 23344444433 5677776432 11100
Q ss_pred cccccCCCccceeeecCCCCceEEEEEEecCC
Q 004238 437 EKVRLRGEYYAWKMCGLDKSTCLTVFFDLSSS 468 (766)
Q Consensus 437 ~~~~g~~~~~~~~l~~~~~~~s~~~~f~~~~~ 468 (766)
....|. ....-+..++....++.|..+++..
T Consensus 397 ~~~~~~-~~~~~~C~~v~ig~~v~F~v~v~~~ 427 (503)
T 3v4v_B 397 EKREGK-AEDRGQCNHVRINQTVTFWVSLQAT 427 (503)
T ss_dssp CCCCCC-CBSSEEECSCCTTCEEEEEEEEEEC
T ss_pred CccCcc-cccCCcccCcccCCEEEEEEEEEee
Confidence 000000 0111245667777777777776643
No 43
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=95.13 E-value=0.012 Score=63.52 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=36.7
Q ss_pred hcccceeeccC-CC--Cccc--ccccccccCCeEEEEeCCcEEEEEECCchh
Q 004238 623 IQPSLISYSFN-SL--PQPA--LLDVASIAADRILLLDTYFSVVIFHGMTIA 669 (766)
Q Consensus 623 iyP~L~~~~~~-~~--p~~~--~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~ 669 (766)
..|+||.++.. +. .+.+ +++.+.|.++.+||||+|..||||+|+.+.
T Consensus 268 ~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as 319 (371)
T 3fg6_A 268 HPPRLYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDAN 319 (371)
T ss_dssp SCCEEEEEECTTSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCC
T ss_pred cCcEEEEEEcCCCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 35899988742 21 1222 588889999999999999999999999754
No 44
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=94.91 E-value=5.4 Score=43.42 Aligned_cols=278 Identities=13% Similarity=0.092 Sum_probs=140.4
Q ss_pred CCcEEEEEEEcccchHH----HHHHHHHHHHHhccCCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHh
Q 004238 133 LSPVFVFVLDTCMIEEE----LGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLE 208 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~ 208 (766)
.|-=.+|++|+|.++.+ ++.+...|...|..+..+.|+||..|-+..-.= ..... ++
T Consensus 121 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P-~~~t~------------------p~ 181 (454)
T 3vi3_B 121 YPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMP-YISTT------------------PA 181 (454)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTT-TSCCS------------------TT
T ss_pred CceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCC-cccCC------------------hH
Confidence 45668899999999865 566666777777778889999999986532110 00000 01
Q ss_pred hhccccCcccccCCCcccCCCCCCCCCC-c-ccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHH--
Q 004238 209 QLGLSASGRRAAGGYQKAAVPNAFPNSG-V-SRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATG-- 284 (766)
Q Consensus 209 ~l~~~d~~~~~~~g~~~~~~~~~~~~~p-~-~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~-- 284 (766)
.+ ..|..+ . ..-.| . -+-..++.+......+.+.++.-. .+...|+..+-+-+++|.-
T Consensus 182 ~~------~nPC~~-----~---~~c~~~f~fr~~l~LT~d~~~F~~~V~~~~is----Gn~D~PEgg~DAl~Qaavc~~ 243 (454)
T 3vi3_B 182 KL------RNPCTS-----E---QNCTTPFSYKNVLSLTNKGEVFNELVGKQRIS----GNLDSPEGGFDAIMQVAVCGS 243 (454)
T ss_dssp TT------TCCSCS-----S---SCCCCCCSEEEEEEEESCHHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHH
T ss_pred Hh------cCCCcC-----c---cCCCCCcceeeeeecCCCHHHHHHHHhhcccc----CCCcCCchhHHHHHHHhcccc
Confidence 01 000000 0 00011 1 122556766655566666664431 2334566666666666653
Q ss_pred HhhccCCCCccEEEEEeCCCCC--CCCcccccCCCCCCccCCCCCCcCcCccchh---HHHHHHHHHHHHHHcCcEEEEE
Q 004238 285 LLGACLPGTGARIVALVGGPCT--EGPGTIVSKDLSEPVRSHKDLDKDAAPFFKK---AVKFYDGLAKQLVSQGHVLDLF 359 (766)
Q Consensus 285 ll~~~~~~~gGrIi~f~sg~pt--~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~---a~~fY~~la~~~~~~~isvdlf 359 (766)
-+. .++ .-|+++|++-.+- .|-|++...-.++-.+.|-+ +. .|... ...-..+|+..+.+++|-+ ||
T Consensus 244 ~ig--WR~-a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~--~~--~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IF 315 (454)
T 3vi3_B 244 LIG--WRN-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE--NN--MYTMSHYYDYPSIAHLVQKLSENNIQT-IF 315 (454)
T ss_dssp HHT--CCS-SEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEE--TT--EECCTTTSCCCCHHHHHHHHHHTTEEE-EE
T ss_pred ccC--Ccc-ceEEEEEECCCCcCcCCCccccceecCCCCccEeC--CC--cccccccCCCCCHHHHHHHHHhcCCcE-EE
Confidence 232 345 7899998866544 58888766544455556644 11 11110 1112456777888888765 77
Q ss_pred EecCCccChhcchhhhhccc-ceEEEeCCCCchhhHHHHHHHHhhccccccceeeeEEEEEe-cCCceEEEEEcCccccc
Q 004238 360 ASALDQVGVAEMKVAVEKTG-GLVVLAESFGHSVFKDSFKRIFEDGEQSLGLCFNGALEIIC-SKDIKIQGIIGPCTSLE 437 (766)
Q Consensus 360 ~~~~~~~~l~~l~~l~~~TG-G~v~~~~~f~~~~~~~~l~~~l~~~~~~~~~~~~a~l~vr~-S~gl~v~~~~G~~~~~~ 437 (766)
+.+.....++ ..|++.-+ +.+-.... +.+...+-+.....+ ......|+... ++|++|+-.- .+....
T Consensus 316 AVt~~~~~~Y--~~L~~~ip~s~vg~Ls~-dSsNiv~LI~~aY~~------i~S~V~l~~~~~p~~l~v~y~s-~C~~~~ 385 (454)
T 3vi3_B 316 AVTEEFQPVY--KELKNLIPKSAVGTLSA-NSSNVIQLIIDAYNS------LSSEVILENGKLSEGVTISYKS-YCKNGV 385 (454)
T ss_dssp EEEGGGHHHH--HHHHHHSTTEEEEEECT-TCTTHHHHHHHHHHH------HHTCEEEEECCCCTTEEEEEEE-ECGGGC
T ss_pred EEcCccchHH--HHHHHhCCCceeeEccc-cchhHHHHHHHHHHH------hheEEEEecCCCCCceEEEEEe-ecCCCC
Confidence 7776665554 34444333 33333332 222233333222221 22344454433 5567664332 222110
Q ss_pred ccccCCCccceeeecCCCCceEEEEEEecCC
Q 004238 438 KVRLRGEYYAWKMCGLDKSTCLTVFFDLSSS 468 (766)
Q Consensus 438 ~~~g~~~~~~~~l~~~~~~~s~~~~f~~~~~ 468 (766)
.. .+...-...++....++.|..+++..
T Consensus 386 ~~---~~~~~~~C~~v~ig~~v~F~v~v~~~ 413 (454)
T 3vi3_B 386 NG---TGENGRKCSNISIGDEVQFEISITSN 413 (454)
T ss_dssp EE---EGGGGGEECCCCTTCEEEEEEEEEES
T ss_pred cc---CCccCCCCCCccCCCEEEEEEEEEee
Confidence 00 00001245566777777777777643
No 45
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=94.87 E-value=0.045 Score=58.57 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=62.8
Q ss_pred cccceeeccCC--CCcccccccccccCCeEEEEeCCcEEEEEECCchhHHhhcCCCCChhhhHHHHHhhCcHHHHHHHH-
Q 004238 624 QPSLISYSFNS--LPQPALLDVASIAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELII- 700 (766)
Q Consensus 624 yP~L~~~~~~~--~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~i~- 700 (766)
.|+||.+.-.. ...+++++.++|.++-+||||+|..||+|+|+... ..|.. .....|+.|.
T Consensus 135 ~~rL~~v~G~~~v~~~eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s~---------~~Er~-------~A~~~a~~i~~ 198 (347)
T 1j72_A 135 VQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSN---------ILERN-------KARDLALAIRD 198 (347)
T ss_dssp EEEEEEEECSSSCEEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCC---------HHHHH-------HHHHHHHHHHT
T ss_pred CcEEEEEECCCceEEEEEeeeHHHcCCCceEEEecCCEEEEEECCCCC---------HHHHH-------HHHHHHHHHHh
Confidence 57898886432 23568899999999999999999999999999742 22211 1233566675
Q ss_pred hcCCCCcEEEEEeCCCChHHHHHHhhc
Q 004238 701 RDRFPVPRLVVCDQHGSQARFLLAKLN 727 (766)
Q Consensus 701 ~~R~p~p~~~~~~~g~s~~r~l~s~L~ 727 (766)
.+|...+.+++++||...+.|| ..|.
T Consensus 199 ~~~~g~~~v~~v~EG~E~~~Fw-~~LG 224 (347)
T 1j72_A 199 SERQGKAQVEIVTDGEEPAEMI-QVLG 224 (347)
T ss_dssp TSCCSSCEEEEEETTCCCHHHH-HHHC
T ss_pred hccCCCceEEEEeCCCCHHHHH-HHhC
Confidence 3566778899999998777776 4443
No 46
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=94.03 E-value=0.16 Score=60.77 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=38.3
Q ss_pred CCcEEEEEEEcccchH--------HHHHHHHHHHHHhccCC--CCcEEEEEEECCeEE
Q 004238 133 LSPVFVFVLDTCMIEE--------ELGYARSELKRAIGLLP--DNAMVGLVTFGTQAH 180 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~--------~l~~~~~~l~~~l~~lp--~~~~VglItf~~~V~ 180 (766)
.+.-.|||||+|.++. +++.++++++..++.|. ++.+||||+|++.+.
T Consensus 223 ~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~ 280 (893)
T 2ww8_A 223 VPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIF 280 (893)
T ss_dssp CCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBC
T ss_pred CCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccc
Confidence 5677999999999973 25677888888887664 478999999998653
No 47
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=93.93 E-value=0.087 Score=61.98 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=38.2
Q ss_pred HhhcccceeeccC-CC--Cccc--ccccccccCCeEEEEeCCcEEEEEECCchh
Q 004238 621 VMIQPSLISYSFN-SL--PQPA--LLDVASIAADRILLLDTYFSVVIFHGMTIA 669 (766)
Q Consensus 621 ~~iyP~L~~~~~~-~~--p~~~--~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~ 669 (766)
....|+||.++.. +. ...+ +++.+.|.++.+||||+|..||||+|+.+.
T Consensus 610 ~~~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~ 663 (729)
T 1d0n_A 610 DAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQ 663 (729)
T ss_dssp HHSCCEEEEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSC
T ss_pred cccCCeEEEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 3568999998742 21 1122 578889999999999999999999999754
No 48
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=93.40 E-value=1.7 Score=49.95 Aligned_cols=68 Identities=19% Similarity=0.140 Sum_probs=46.4
Q ss_pred CcchhHHHHHHHHHhhccCCC-CccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHH
Q 004238 272 SRCTGVALSVATGLLGACLPG-TGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLV 350 (766)
Q Consensus 272 ~~~~G~AL~~A~~ll~~~~~~-~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~ 350 (766)
..++|.||.+|..+++..... ..=+|++||+|--+.|. + .....-....|..+.
T Consensus 140 ~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~--------------------~-----~~~~~~~~~~a~~l~ 194 (609)
T 1jey_A 140 DYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN--------------------D-----SAKASRARTKAGDLR 194 (609)
T ss_dssp CCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTT--------------------C-----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCC--------------------c-----hHHHHHHHHHHHHHH
Confidence 468999999999999843222 24588999987533321 0 111122467889999
Q ss_pred HcCcEEEEEEecCC
Q 004238 351 SQGHVLDLFASALD 364 (766)
Q Consensus 351 ~~~isvdlf~~~~~ 364 (766)
..||.|.+|.++.+
T Consensus 195 ~~gI~i~~igig~~ 208 (609)
T 1jey_A 195 DTGIFLDLMHLKKP 208 (609)
T ss_dssp HHTEEEEEEEBCCT
T ss_pred hcCcEEEEEecCCC
Confidence 99999999987654
No 49
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=92.95 E-value=0.2 Score=58.85 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=61.7
Q ss_pred hcccceeeccCC--CCcccccccccccCCeEEEEeCCcEEEEEECCchhHHhhcCCCCChhhhHHHHHhhCcHHHHHHHH
Q 004238 623 IQPSLISYSFNS--LPQPALLDVASIAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELII 700 (766)
Q Consensus 623 iyP~L~~~~~~~--~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~i~ 700 (766)
-.|+||.+.-.. .-..|+++.+||.++.+||||+|..||+|.|+... ..| +. .....|+.|+
T Consensus 132 ~~~rL~~vkG~~~v~~~eV~~s~~SLns~DvFILd~g~~iy~W~G~~s~---------~~E--r~-----kA~~~a~~i~ 195 (729)
T 1d0n_A 132 VVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSN---------RFE--RL-----KATQVSKGIR 195 (729)
T ss_dssp CCCEEEEEECSSSCEEEEECSSGGGCCSSSEEEEECSSEEEEEECTTCC---------HHH--HH-----HHHHHHHHHH
T ss_pred CCcEEEEEECCCcEEEEEEeccHHHcCCCCeEEEEcCCEEEEEECCCCC---------HHH--HH-----HHHHHHHHHh
Confidence 358898886322 24568899999999999999999999999998732 122 21 1233566676
Q ss_pred h-cCCCCcEEEEEeCCCChHHHHH
Q 004238 701 R-DRFPVPRLVVCDQHGSQARFLL 723 (766)
Q Consensus 701 ~-~R~p~p~~~~~~~g~s~~r~l~ 723 (766)
. +|.....++++++|...+.||.
T Consensus 196 ~~er~g~~~i~~v~Eg~e~~eFw~ 219 (729)
T 1d0n_A 196 DNERSGRAQVSVFEEGAEPEAMLQ 219 (729)
T ss_dssp HHSGGGCSEEEEEETTCCCHHHHH
T ss_pred hhhcCCCccEEEecCCCChHHHHH
Confidence 3 6766788999999987767764
No 50
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=92.83 E-value=0.42 Score=54.19 Aligned_cols=32 Identities=6% Similarity=-0.056 Sum_probs=24.5
Q ss_pred CcchhHHHHHHHHHhhccCCCCccEEEEEeCCCCCCC
Q 004238 272 SRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEG 308 (766)
Q Consensus 272 ~~~~G~AL~~A~~ll~~~~~~~gGrIi~f~sg~pt~G 308 (766)
.+.+|.||..|...- .....|+++++|..+.|
T Consensus 444 gT~i~~aL~~a~~~~-----~~~~~iIliTDg~~~~g 475 (538)
T 1yvr_A 444 STDCALPMLWAQKTN-----TAADIFIVFTDCETNVE 475 (538)
T ss_dssp CCCTTHHHHHHHHTT-----CCCSEEEEEECCCCCSS
T ss_pred CCcHHHHHHHHHhcc-----CCCCEEEEEcCCCCCCC
Confidence 467889999988752 45588999999976654
No 51
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=91.81 E-value=5.2 Score=39.09 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=32.5
Q ss_pred CcEEEEEEEcccchHH-HHHH---HHHHHHHhccCCCCcEEEEEEECCe
Q 004238 134 SPVFVFVLDTCMIEEE-LGYA---RSELKRAIGLLPDNAMVGLVTFGTQ 178 (766)
Q Consensus 134 ~p~~vFvID~s~~~~~-l~~~---~~~l~~~l~~lp~~~~VglItf~~~ 178 (766)
|-=.+|++|+|.++.. ++.+ ...|...|+.+.++.|+||.+|-+.
T Consensus 3 pvDl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp CEEEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred ceEEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 4457999999999865 4444 4444455555667899999999655
No 52
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=91.45 E-value=0.22 Score=57.66 Aligned_cols=208 Identities=13% Similarity=0.114 Sum_probs=105.2
Q ss_pred CCcEEEEEEEcccchHH----HHHHHHHHHHHhccCCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHh
Q 004238 133 LSPVFVFVLDTCMIEEE----LGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLE 208 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~ 208 (766)
.|.=.+|++|+|.++.. ++.+...|...|..+.++.|+||.+|-+.... ...... .+++..
T Consensus 103 ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~-P~~~~~--------------p~~~~~ 167 (687)
T 3k6s_B 103 YPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVL-PFVNTH--------------PDKLRN 167 (687)
T ss_dssp CCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSST-TSSCCS--------------STTTTC
T ss_pred CceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccC-CccccC--------------chhccC
Confidence 45678999999999865 44555566667777888999999999764321 011000 011000
Q ss_pred hhccccCcccccCCCcccCCCCCCCCCC-c-ccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHH--H
Q 004238 209 QLGLSASGRRAAGGYQKAAVPNAFPNSG-V-SRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVAT--G 284 (766)
Q Consensus 209 ~l~~~d~~~~~~~g~~~~~~~~~~~~~p-~-~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~--~ 284 (766)
.- ...+ ..-.| . -+..+++.+......+.+..+.-. .+...|+..+-+.+++|+ .
T Consensus 168 Pc--~~~~---------------~~c~~~f~f~~~l~lt~~~~~F~~~v~~~~is----gn~D~PE~g~dAl~qa~vc~~ 226 (687)
T 3k6s_B 168 PC--PNKE---------------KECQPPFAFRHVLKLTNNSNQFQTEVGKQLIS----GNLDAPEGGLDAMMQVAACPE 226 (687)
T ss_dssp CC--CSCC---------------CCCCCCCSCEEEEEEESCSHHHHHHHHTSCCC----CCSSSSCCHHHHHHHHTTCHH
T ss_pred CC--CCCC---------------CCcCCcccceeecccCCCHHHHHHHHhhcccc----CCCCCCchHHHHHHHHhhccc
Confidence 00 0000 00111 1 122345665544455666655431 223446655555556653 3
Q ss_pred HhhccCCCCccEEEEEeCCCCC--CCCcccccCCCCCCccCCCCCCcCcCccchhHHH---HHHHHHHHHHHcCcEEEEE
Q 004238 285 LLGACLPGTGARIVALVGGPCT--EGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVK---FYDGLAKQLVSQGHVLDLF 359 (766)
Q Consensus 285 ll~~~~~~~gGrIi~f~sg~pt--~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~---fY~~la~~~~~~~isvdlf 359 (766)
-+. .+. .-|+|+|++-.+. .|-|++...-.++-.+-|.+ .. .|...... --.+|+.++++++|.+ ||
T Consensus 227 ~ig--Wr~-a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~--~~--~y~~s~~~DyPS~~ql~~~l~~~~I~~-if 298 (687)
T 3k6s_B 227 EIG--WRN-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLE--DN--LYKRSNEFDYPSVGQLAHKLAENNIQP-IF 298 (687)
T ss_dssp HHC--CCS-SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCS--SS--BCSSGGGSCCCCGGGHHHHHHHTTCBC-CE
T ss_pred ccC--Ccc-ceEEEEEECCCccccCCCccccceecCCCCccccC--CC--ccccccccCCCCHHHHHHHHHHcCCeE-EE
Confidence 443 334 7899998876655 46666644433333334432 10 11111110 0234666677788854 55
Q ss_pred EecCCccChhcchhhhh-cccceEEEeC
Q 004238 360 ASALDQVGVAEMKVAVE-KTGGLVVLAE 386 (766)
Q Consensus 360 ~~~~~~~~l~~l~~l~~-~TGG~v~~~~ 386 (766)
+......+++ ..|+. .+|+.+-...
T Consensus 299 avt~~~~~~y--~~l~~~i~~s~v~~L~ 324 (687)
T 3k6s_B 299 AVTSRMVKTY--EKLTEIIPKSAVGELS 324 (687)
T ss_dssp EECGGGHHHH--HHHHHHSSSCCEEECC
T ss_pred EEeccchhhH--HHHHhhcCCceeeeec
Confidence 5555544443 34443 3455555444
No 53
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=91.33 E-value=0.22 Score=53.00 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=37.4
Q ss_pred cccceeeccCC--C--CcccccccccccCCeEEEEeCCcEEEEEECCch
Q 004238 624 QPSLISYSFNS--L--PQPALLDVASIAADRILLLDTYFSVVIFHGMTI 668 (766)
Q Consensus 624 yP~L~~~~~~~--~--p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v 668 (766)
.|+||.+..+. . ..+++++.++|.++.+||||++..||+|+|+..
T Consensus 124 ~~rL~~v~g~~~~~~~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s 172 (344)
T 2fh1_A 124 STRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGA 172 (344)
T ss_dssp SSEEEEEEECTTCCEEEEEECCSGGGCBTTSEEEEECSSCEEEEECTTC
T ss_pred CceEEEEECCCCCceEEEEecCchhhcCCCceEEEecCCEEEEEECCCC
Confidence 57899987432 1 346788999999999999999999999999974
No 54
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=90.41 E-value=0.37 Score=51.84 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=37.4
Q ss_pred cccceeeccCC----CCcccccccccccCCeEEEEeCC-cEEEEEECCch
Q 004238 624 QPSLISYSFNS----LPQPALLDVASIAADRILLLDTY-FSVVIFHGMTI 668 (766)
Q Consensus 624 yP~L~~~~~~~----~p~~~~Ls~~~l~~~~i~llD~g-~~i~i~~G~~v 668 (766)
-|+||.+..+. .-.+|+++.++|.++.+||||+| ..||+|.|+..
T Consensus 165 ~~rL~~vrg~~~~~vr~~EV~~~~ssLns~d~FILd~~~~~iyvW~G~~s 214 (371)
T 3fg6_A 165 PTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGA 214 (371)
T ss_dssp CCEEEEEECCSSSCCEEEEECSSGGGCBTTSEEEEECTTSEEEEEECTTC
T ss_pred ccEEEEEeccCCCceEEEEecCCHHHccCCCeEEEEcCCCeEEEEECCCC
Confidence 58999987432 13457899999999999999999 99999999974
No 55
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=79.19 E-value=0.39 Score=52.10 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=0.0
Q ss_pred cccceeeccCC----CCcccccccccccCCeEEEEeCCcEEEEEECCchh
Q 004238 624 QPSLISYSFNS----LPQPALLDVASIAADRILLLDTYFSVVIFHGMTIA 669 (766)
Q Consensus 624 yP~L~~~~~~~----~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~ 669 (766)
.|+||.+.-.. .-.+|+++.++|.++.+||||++..||+|.|+...
T Consensus 178 ~~rLf~VrG~~~~~~ra~EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss 227 (398)
T 3fg7_A 178 STRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCS 227 (398)
T ss_dssp --------------------------------------------------
T ss_pred CcEEEEEECCCCCceEEEEecCCHHHccCCceEEEEeCCeEEEEeCCCCC
Confidence 57888775322 13468899999999999999999999999999753
No 56
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=78.39 E-value=0.47 Score=37.72 Aligned_cols=20 Identities=25% Similarity=0.881 Sum_probs=17.4
Q ss_pred CceEEecCCCCCCCCCcccc
Q 004238 76 AKIWICPFCYQRNHFPPHYA 95 (766)
Q Consensus 76 ~~~W~C~~C~~~N~~p~~y~ 95 (766)
.-.|+|++|...|++|.+|.
T Consensus 15 ~~tWVCpICsfsN~v~s~fd 34 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFT 34 (76)
T ss_dssp CEEEECTTTCCEEEESSCCC
T ss_pred ccceECccccccCcCccccC
Confidence 35899999999999998774
No 57
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=75.95 E-value=6.9 Score=44.04 Aligned_cols=45 Identities=11% Similarity=-0.064 Sum_probs=28.9
Q ss_pred HHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhccCCCCccEEEEEeCCCCCCC
Q 004238 252 NSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEG 308 (766)
Q Consensus 252 ~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~gGrIi~f~sg~pt~G 308 (766)
..+|+.|.... ...+.++.||..|.... .....|+++++|--+.|
T Consensus 427 ~~~l~~l~~~~-------~ggTdi~~~l~~a~~~~-----~~~~~vIliTD~~~~~g 471 (535)
T 2nvo_A 427 ESAMQKAQSVS-------FGGTDCAQPILWAAQER-----LDVDTFVVYTDNETWAG 471 (535)
T ss_dssp HHHHHHTCCSS-------BCCCCTTHHHHHHHHTT-----CCCSEEEEEESSCCCCC
T ss_pred HHHHHHHhhCC-------CCCccHHHHHHHHHHhc-----CCCCEEEEEeCCCccCC
Confidence 35566665421 12466788888776543 44688999999876554
No 58
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=74.19 E-value=1.1 Score=35.54 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=23.7
Q ss_pred CCCcccCCCCceecCceeEEcCCceEEecCCCCCCCC
Q 004238 54 YAPLRCKTCTAALNAFARVDFTAKIWICPFCYQRNHF 90 (766)
Q Consensus 54 ~~p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~N~~ 90 (766)
|-++||. |+++ .-.+.+.+.-.|+ ||+.-.+
T Consensus 2 Y~vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 2 YIIFRCD-CGRA----LYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEEEET-TSCC----EEEETTCSEEEET-TTEEEEC
T ss_pred eEEEECC-CCCE----EEEcCCCcEEECC-CCCeeee
Confidence 3478999 9996 4556667777899 9988655
No 59
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=73.11 E-value=1.1 Score=38.39 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=27.1
Q ss_pred CCcccCCCCceecCceeEEcCCceEEecCCCCCCCCCcccc
Q 004238 55 APLRCKTCTAALNAFARVDFTAKIWICPFCYQRNHFPPHYA 95 (766)
Q Consensus 55 ~p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~N~~p~~y~ 95 (766)
.|.+|.+|+--. .+.-++.-+|+.|+..|-.++.|.
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P~F~ 101 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSEWIEEPRFK 101 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCCCEE
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCCCccCCccee
Confidence 489999999764 233345679999999998876653
No 60
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=69.56 E-value=17 Score=36.21 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=35.1
Q ss_pred HHHHHHHHcCcEEEEEEecC-C---ccChhcchhhhhcccceEEEeCC
Q 004238 344 GLAKQLVSQGHVLDLFASAL-D---QVGVAEMKVAVEKTGGLVVLAES 387 (766)
Q Consensus 344 ~la~~~~~~~isvdlf~~~~-~---~~~l~~l~~l~~~TGG~v~~~~~ 387 (766)
+.|+.+.+.||.|..+.+.. + .-|..+|..+|..|||..+....
T Consensus 29 ~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 29 EAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP 76 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG
T ss_pred HHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH
Confidence 45777889999999998843 2 34568899999999999998743
No 61
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=67.89 E-value=1.2 Score=33.44 Aligned_cols=29 Identities=17% Similarity=0.663 Sum_probs=20.9
Q ss_pred CCcccCCCCceecCceeEEcCCceEEecCCCCC
Q 004238 55 APLRCKTCTAALNAFARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 55 ~p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~ 87 (766)
..--|.+|+.++.- ..+.-.|.|++|.+.
T Consensus 32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 32 QTKFCARCGGRVSL----RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp CCEECTTSEEEEES----STTCEEEEEHHHHHH
T ss_pred CCeeecccCCEeee----cCCeEEEEehhhhhc
Confidence 45568899987654 344568999999653
No 62
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=62.48 E-value=9.5 Score=27.76 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=23.4
Q ss_pred CcccCCCCceecCceeEEcCCceEEecCCCCC
Q 004238 56 PLRCKTCTAALNAFARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 56 p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~ 87 (766)
...|..|++ .-..++...+.++|.-||..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 467999998 33567877789999999985
No 63
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=60.04 E-value=5 Score=32.90 Aligned_cols=29 Identities=21% Similarity=0.555 Sum_probs=21.6
Q ss_pred CcccCCCCceecCceeEEcCCceEEecCCCCCC
Q 004238 56 PLRCKTCTAALNAFARVDFTAKIWICPFCYQRN 88 (766)
Q Consensus 56 p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~N 88 (766)
.-.|..|++- ..++.+.+.|.|.-|+...
T Consensus 27 ~y~Cp~CG~~----~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 27 DHACPNCGED----RVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp CEECSSSCCE----EEEEEETTEEEETTTCCEE
T ss_pred cCcCCCCCCc----ceeccCCCeEECCCCCCEe
Confidence 3569999983 2445556799999999864
No 64
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=53.51 E-value=4.8 Score=31.45 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=28.7
Q ss_pred CCCcccCCCCceecCceeEEcCCceEEecCCCCC
Q 004238 54 YAPLRCKTCTAALNAFARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 54 ~~p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~ 87 (766)
..+..|.+|++--.|..+-...|. ..||-||..
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~ 39 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 39 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHH
Confidence 357899999999999999998876 999999853
No 65
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=52.64 E-value=3.1 Score=30.04 Aligned_cols=31 Identities=23% Similarity=0.580 Sum_probs=16.3
Q ss_pred cccCCCCceecCc----eeEEcCCceEEecCCCCC
Q 004238 57 LRCKTCTAALNAF----ARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 57 ~RC~~C~ayiNp~----~~~~~~~~~W~C~~C~~~ 87 (766)
-+|..|+-...|- ..|.+--..|+|+.|+..
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 3577776544432 222222335777777753
No 66
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=51.34 E-value=8.1 Score=23.29 Aligned_cols=26 Identities=31% Similarity=0.751 Sum_probs=21.4
Q ss_pred ccCCCCceecCceeEEcCCceEEecCC
Q 004238 58 RCKTCTAALNAFARVDFTAKIWICPFC 84 (766)
Q Consensus 58 RC~~C~ayiNp~~~~~~~~~~W~C~~C 84 (766)
.|-.|-.+=|-||. |.-|+.|.|.=|
T Consensus 2 ~cvscv~fgngfcg-dncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCG-DNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEE-CSSSCEEECSCC
T ss_pred cceEeEeecCcccc-CCcCCcccccCC
Confidence 48889999999996 445789999876
No 67
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=49.69 E-value=3.6 Score=33.97 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=20.2
Q ss_pred CCcccCCCCceecCc-----------eeEEcCCceEEecCCCCC
Q 004238 55 APLRCKTCTAALNAF-----------ARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 55 ~p~RC~~C~ayiNp~-----------~~~~~~~~~W~C~~C~~~ 87 (766)
..-+|..|+-...|- ..|++--..|+|+.|+..
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 456788888555542 233333456888888863
No 68
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=49.53 E-value=4.2 Score=28.89 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=25.8
Q ss_pred CcccCCCCceecCceeEEcCCceEEecCCCCC
Q 004238 56 PLRCKTCTAALNAFARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 56 p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~ 87 (766)
|..|.+|++--.|..+-...|. -.||.||..
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 31 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 31 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHHH
Confidence 4679999999999999888776 889999853
No 69
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=44.51 E-value=5.1 Score=29.72 Aligned_cols=11 Identities=36% Similarity=1.256 Sum_probs=7.0
Q ss_pred ceEEecCCCCC
Q 004238 77 KIWICPFCYQR 87 (766)
Q Consensus 77 ~~W~C~~C~~~ 87 (766)
..|+|+.|+..
T Consensus 34 ~dw~CP~Cg~~ 44 (52)
T 1yk4_A 34 DDWVCPLCGAP 44 (52)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 45777777653
No 70
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=40.26 E-value=5.8 Score=29.41 Aligned_cols=9 Identities=44% Similarity=1.335 Sum_probs=4.9
Q ss_pred eEEecCCCC
Q 004238 78 IWICPFCYQ 86 (766)
Q Consensus 78 ~W~C~~C~~ 86 (766)
.|+|+.|+.
T Consensus 36 dw~CP~Cg~ 44 (52)
T 1e8j_A 36 DWACPVCGA 44 (52)
T ss_dssp TCCCSSSCC
T ss_pred CCcCCCCCC
Confidence 455555554
No 71
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=40.11 E-value=6.8 Score=29.28 Aligned_cols=30 Identities=20% Similarity=0.596 Sum_probs=16.0
Q ss_pred ccCCCCceecCc-----------eeEEcCCceEEecCCCCC
Q 004238 58 RCKTCTAALNAF-----------ARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 58 RC~~C~ayiNp~-----------~~~~~~~~~W~C~~C~~~ 87 (766)
+|.-|+-..+|- ..|.+--..|+|+.|+..
T Consensus 5 ~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp EETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 566666554432 223333345777777764
No 72
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=40.00 E-value=6.9 Score=30.95 Aligned_cols=11 Identities=27% Similarity=0.926 Sum_probs=7.3
Q ss_pred ceEEecCCCCC
Q 004238 77 KIWICPFCYQR 87 (766)
Q Consensus 77 ~~W~C~~C~~~ 87 (766)
..|+|+.|+..
T Consensus 39 ddw~CP~Cga~ 49 (70)
T 1dx8_A 39 DSFMCPACRSP 49 (70)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 45777777763
No 73
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.08 E-value=10 Score=30.35 Aligned_cols=31 Identities=19% Similarity=0.539 Sum_probs=22.2
Q ss_pred cccCCCCceecCceeEEcCCceEEecCCCCC
Q 004238 57 LRCKTCTAALNAFARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 57 ~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~ 87 (766)
..|..|.-=+.--|++...+..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 4466666666666766665578999999764
No 74
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=38.88 E-value=9.1 Score=37.07 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=17.7
Q ss_pred CcccCCCCceecCceeEEcCCceEEecCCCCC
Q 004238 56 PLRCKTCTAALNAFARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 56 p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~ 87 (766)
.-+|..|+-+... ..-|+||+|+..
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 4679999865442 234999999875
No 75
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=37.99 E-value=5.6 Score=28.68 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=26.7
Q ss_pred CCcccCCCCceecCceeEEcCCceEEecCCCCC
Q 004238 55 APLRCKTCTAALNAFARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 55 ~p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~ 87 (766)
....|.+|++--.|..+-...|. ..||-||..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 34 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLY 34 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHH
Confidence 35679999999999998888775 889999863
No 76
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=37.15 E-value=11 Score=33.11 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=25.9
Q ss_pred cccCCCCceecCce----eEEcCC---ceEEecCCCCCCCCC
Q 004238 57 LRCKTCTAALNAFA----RVDFTA---KIWICPFCYQRNHFP 91 (766)
Q Consensus 57 ~RC~~C~ayiNp~~----~~~~~~---~~W~C~~C~~~N~~p 91 (766)
--|++|++++=|-. ++..++ -.++|..||+...+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 35999999987763 344432 367899999987776
No 77
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.09 E-value=11 Score=27.86 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=21.1
Q ss_pred CCcccCCCCceecCceeEEcCCceEEecCCCCCCCCC
Q 004238 55 APLRCKTCTAALNAFARVDFTAKIWICPFCYQRNHFP 91 (766)
Q Consensus 55 ~p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~N~~p 91 (766)
..-.|.+|++- ...+.|.|.=||..|--|
T Consensus 13 ~k~iCpkC~a~--------~~~gaw~CrKCG~~~lr~ 41 (51)
T 3j21_g 13 KKYVCLRCGAT--------NPWGAKKCRKCGYKRLRP 41 (51)
T ss_dssp SEEECTTTCCE--------ECTTCSSCSSSSSCCCEE
T ss_pred CCccCCCCCCc--------CCCCceecCCCCCccccc
Confidence 45568889886 335689999999985433
No 78
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=36.89 E-value=6.9 Score=31.83 Aligned_cols=10 Identities=40% Similarity=1.032 Sum_probs=6.5
Q ss_pred ceEEecCCCC
Q 004238 77 KIWICPFCYQ 86 (766)
Q Consensus 77 ~~W~C~~C~~ 86 (766)
..|+|+.|+.
T Consensus 59 ddW~CPvCga 68 (81)
T 2kn9_A 59 DDWSCPDCGA 68 (81)
T ss_dssp TTCCCTTTCC
T ss_pred CCCcCCCCCC
Confidence 3577777765
No 79
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=36.85 E-value=7 Score=29.32 Aligned_cols=10 Identities=40% Similarity=1.122 Sum_probs=6.1
Q ss_pred ceEEecCCCC
Q 004238 77 KIWICPFCYQ 86 (766)
Q Consensus 77 ~~W~C~~C~~ 86 (766)
..|+|+.|+.
T Consensus 35 ~dw~CP~Cga 44 (55)
T 2v3b_B 35 ADWVCPDCGV 44 (55)
T ss_dssp TTCCCTTTCC
T ss_pred CCCcCCCCCC
Confidence 3466666665
No 80
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.57 E-value=20 Score=26.19 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=18.7
Q ss_pred CcccCCCCc--eecCceeEEcCCceEEecCCCCC
Q 004238 56 PLRCKTCTA--ALNAFARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 56 p~RC~~C~a--yiNp~~~~~~~~~~W~C~~C~~~ 87 (766)
--.|.+|++ ++-+ ...+|.|.=||..
T Consensus 19 ~k~CP~CG~~~fm~~------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMAD------HGDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEE------CSSEEECSSSCCE
T ss_pred cccCCCCCCceEEec------CCCeEECCCCCCE
Confidence 456999998 4432 2469999999864
No 81
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.78 E-value=12 Score=34.47 Aligned_cols=33 Identities=15% Similarity=0.366 Sum_probs=21.2
Q ss_pred cccCCCCceecCceeE-EcCCceEEecCCCCCCC
Q 004238 57 LRCKTCTAALNAFARV-DFTAKIWICPFCYQRNH 89 (766)
Q Consensus 57 ~RC~~C~ayiNp~~~~-~~~~~~W~C~~C~~~N~ 89 (766)
..|..|+..+.--|.+ ......|.|.+|...-.
T Consensus 86 ~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 86 RQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp EECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred CcCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 4466666665555542 33457899999986543
No 82
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=28.61 E-value=28 Score=30.71 Aligned_cols=29 Identities=21% Similarity=0.616 Sum_probs=22.1
Q ss_pred CCcccCCCCceecCceeEEcCCceEEecCCCCCC
Q 004238 55 APLRCKTCTAALNAFARVDFTAKIWICPFCYQRN 88 (766)
Q Consensus 55 ~p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~N 88 (766)
..+.|.+|.+ .|.--| |..|+|+-|++.=
T Consensus 26 ~lP~CP~C~s---eytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNS---EYTYED--GALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCC---CCCEEC--SSSEEETTTTEEE
T ss_pred cCCCCCCCCC---cceEec--CCeEECCcccccc
Confidence 4678999987 565444 5689999999863
No 83
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=27.90 E-value=15 Score=24.06 Aligned_cols=13 Identities=31% Similarity=0.899 Sum_probs=11.1
Q ss_pred ceEEecCCCCCCC
Q 004238 77 KIWICPFCYQRNH 89 (766)
Q Consensus 77 ~~W~C~~C~~~N~ 89 (766)
+-|.|+-|+..|-
T Consensus 4 gDW~C~~C~~~Nf 16 (32)
T 2lk0_A 4 EDWLCNKCCLNNF 16 (32)
T ss_dssp SEEECTTTCCEEE
T ss_pred CCCCcCcCcCCcC
Confidence 4799999999884
No 84
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=27.74 E-value=16 Score=34.88 Aligned_cols=28 Identities=18% Similarity=0.515 Sum_probs=19.0
Q ss_pred CCcccCCCCceecCceeE-EcCCceEEecCCC
Q 004238 55 APLRCKTCTAALNAFARV-DFTAKIWICPFCY 85 (766)
Q Consensus 55 ~p~RC~~C~ayiNp~~~~-~~~~~~W~C~~C~ 85 (766)
...+|++|++ .|..- .+....++|+||+
T Consensus 133 ~l~~C~~Cgg---~fv~~~~~~~~~f~Cp~C~ 161 (192)
T 2avu_E 133 QLSSCNCCGG---NFITHAHQPVGSFACSLCQ 161 (192)
T ss_dssp EEEECTTTCC---EEEEESSCCSSCCCCTTC-
T ss_pred eeCcCCCCCC---CeeCccCCCCCCCcCCCCC
Confidence 4688999997 33322 2235789999999
No 85
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.69 E-value=19 Score=31.48 Aligned_cols=28 Identities=29% Similarity=0.713 Sum_probs=19.8
Q ss_pred CcccCCCCceecCceeEEcCCceE-EecCCCCCCC
Q 004238 56 PLRCKTCTAALNAFARVDFTAKIW-ICPFCYQRNH 89 (766)
Q Consensus 56 p~RC~~C~ayiNp~~~~~~~~~~W-~C~~C~~~N~ 89 (766)
-.||..|+..... ..... .||-|+..+.
T Consensus 73 ~~~C~~CG~~~e~------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 73 ELECKDCSHVFKP------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EEECSSSSCEECS------CCSTTCCCSSSSSCCC
T ss_pred eEEcCCCCCEEeC------CCCCCCcCccccCCCc
Confidence 4789999876554 23456 7999998753
No 86
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=27.27 E-value=26 Score=26.71 Aligned_cols=33 Identities=24% Similarity=0.580 Sum_probs=22.7
Q ss_pred CCCCcccCCCCceecCceeEEcCCceEEecCCCCCCCC--Ccccc
Q 004238 53 PYAPLRCKTCTAALNAFARVDFTAKIWICPFCYQRNHF--PPHYA 95 (766)
Q Consensus 53 ~~~p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~N~~--p~~y~ 95 (766)
...+.+|.+|+.|-= +=+|+.||..... |..|.
T Consensus 3 ks~mr~C~~CgvYTL----------k~~CP~CG~~T~~~hParfS 37 (60)
T 2apo_B 3 EMRMKKCPKCGLYTL----------KEICPKCGEKTVIPKPPKFS 37 (60)
T ss_dssp CCCCEECTTTCCEES----------SSBCSSSCSBCBCCCCCCCC
T ss_pred hhhceeCCCCCCEec----------cccCcCCCCcCCCCCCCCCC
Confidence 345788999998832 2369999987654 44443
No 87
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=27.27 E-value=13 Score=41.66 Aligned_cols=20 Identities=25% Similarity=0.881 Sum_probs=0.0
Q ss_pred CceEEecCCCCCCCCCcccc
Q 004238 76 AKIWICPFCYQRNHFPPHYA 95 (766)
Q Consensus 76 ~~~W~C~~C~~~N~~p~~y~ 95 (766)
...|+|++|+..|++|..|.
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~ 134 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFT 134 (566)
T ss_dssp --------------------
T ss_pred ccceeccccccCCCCCCCCC
Confidence 46899999999999997764
No 88
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.58 E-value=14 Score=32.21 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=26.0
Q ss_pred CcccCCCCceecCceeEEcCCceEEecCCCC
Q 004238 56 PLRCKTCTAALNAFARVDFTAKIWICPFCYQ 86 (766)
Q Consensus 56 p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~ 86 (766)
+..|.+|++.--|..+-+..| .+.||-|+.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl 34 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG-HYLCNACGL 34 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred CCCCCCCCCccCCcceECCCC-CCcCcchhh
Confidence 467999999999999988876 699999985
No 89
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=26.39 E-value=19 Score=31.77 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=25.9
Q ss_pred cccCCCCceecCc----eeEEcCC---ceEEecCCCCCCCCC
Q 004238 57 LRCKTCTAALNAF----ARVDFTA---KIWICPFCYQRNHFP 91 (766)
Q Consensus 57 ~RC~~C~ayiNp~----~~~~~~~---~~W~C~~C~~~N~~p 91 (766)
--|++|++++=|- +++..++ -.++|..||+...+|
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 3599999998776 3444432 367899999987776
No 90
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.32 E-value=25 Score=31.60 Aligned_cols=33 Identities=18% Similarity=0.709 Sum_probs=22.1
Q ss_pred cccCCCCceecCceeEEc----CCceEEecCCCCCCC
Q 004238 57 LRCKTCTAALNAFARVDF----TAKIWICPFCYQRNH 89 (766)
Q Consensus 57 ~RC~~C~ayiNp~~~~~~----~~~~W~C~~C~~~N~ 89 (766)
..|..|+-.+..-|.... ....|.|.+|...-.
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 456666666666665543 235899999987643
No 91
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=24.23 E-value=23 Score=32.96 Aligned_cols=35 Identities=6% Similarity=-0.029 Sum_probs=26.9
Q ss_pred CcccCCCCc-----eecCceeEEcC------CceEEecCCCCCCCC
Q 004238 56 PLRCKTCTA-----ALNAFARVDFT------AKIWICPFCYQRNHF 90 (766)
Q Consensus 56 p~RC~~C~a-----yiNp~~~~~~~------~~~W~C~~C~~~N~~ 90 (766)
-+.|.+|+- |+|++-+.+-. +-.|+|.+|++.+.+
T Consensus 37 kvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 37 NIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp EEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred EEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 478999985 68888777642 347999999998764
No 92
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=23.85 E-value=25 Score=22.68 Aligned_cols=16 Identities=25% Similarity=0.681 Sum_probs=12.8
Q ss_pred CceEEecCCCCCCCCC
Q 004238 76 AKIWICPFCYQRNHFP 91 (766)
Q Consensus 76 ~~~W~C~~C~~~N~~p 91 (766)
+..|.|+.|...|.-.
T Consensus 4 ~~~W~C~~CTf~N~~~ 19 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPG 19 (31)
T ss_dssp SCCEECSSSCCEECSS
T ss_pred CccccCCcccccCCCC
Confidence 4589999999998653
No 93
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=22.39 E-value=11 Score=29.05 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=26.7
Q ss_pred CCcccCCCCceecCceeEEcCCceEEecCCCCC
Q 004238 55 APLRCKTCTAALNAFARVDFTAKIWICPFCYQR 87 (766)
Q Consensus 55 ~p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~ 87 (766)
.+..|.+|++--.|..+-...|. -.||.||..
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~ 37 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGLY 37 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHH
T ss_pred CCCcCCCcCCCCCCccCCCCCCC-chhhHHHHH
Confidence 35679999999999998888776 789999853
No 94
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=21.86 E-value=22 Score=23.49 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=11.5
Q ss_pred ceEEecCCCCCCCC
Q 004238 77 KIWICPFCYQRNHF 90 (766)
Q Consensus 77 ~~W~C~~C~~~N~~ 90 (766)
.-|+|+-|+..|--
T Consensus 5 gDW~C~~C~~~Nfa 18 (33)
T 2k1p_A 5 NDWQCKTCSNVNWA 18 (33)
T ss_dssp SSCBCSSSCCBCCT
T ss_pred CCcccCCCCCcccc
Confidence 35999999999843
No 95
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.48 E-value=83 Score=24.67 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=24.0
Q ss_pred CCcccCCCCceecCceeEEcCCceEEecCCCCCCCC
Q 004238 55 APLRCKTCTAALNAFARVDFTAKIWICPFCYQRNHF 90 (766)
Q Consensus 55 ~p~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~N~~ 90 (766)
++..|..|++=+ .++...+.-+|..|+..-++
T Consensus 7 ~iL~CP~ck~~L----~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 7 DILVCPVCKGRL----EFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCCBCTTTCCBE----EEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcC----EEeCCCCEEEcCCCCceecC
Confidence 478999999933 24555678999999986554
No 96
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=20.98 E-value=23 Score=25.37 Aligned_cols=34 Identities=15% Similarity=0.417 Sum_probs=20.0
Q ss_pred CcccCCCCceecCce------eEEcCCceEEecCCCCCCC
Q 004238 56 PLRCKTCTAALNAFA------RVDFTAKIWICPFCYQRNH 89 (766)
Q Consensus 56 p~RC~~C~ayiNp~~------~~~~~~~~W~C~~C~~~N~ 89 (766)
|..|..|+.-..--. +.-.+.+.|.|+.|+..-.
T Consensus 1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 346777765432222 2222456799999997643
No 97
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=20.80 E-value=24 Score=26.59 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=22.7
Q ss_pred CcccCCCCceecCceeEEc------CCceEEecCCCCCCC
Q 004238 56 PLRCKTCTAALNAFARVDF------TAKIWICPFCYQRNH 89 (766)
Q Consensus 56 p~RC~~C~ayiNp~~~~~~------~~~~W~C~~C~~~N~ 89 (766)
|-.|..|+--.+--..+.. +.+.|.|+.|+..-.
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 5678888766544443332 567899999998643
No 98
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=20.36 E-value=49 Score=30.98 Aligned_cols=29 Identities=21% Similarity=0.524 Sum_probs=19.9
Q ss_pred cccCCCCceecCceeEEcCCceEEecCCCCCCCCC
Q 004238 57 LRCKTCTAALNAFARVDFTAKIWICPFCYQRNHFP 91 (766)
Q Consensus 57 ~RC~~C~ayiNp~~~~~~~~~~W~C~~C~~~N~~p 91 (766)
+.|..|.-=+ .+.+++.|.|+-|+.. +-|
T Consensus 43 ~ACp~CnKKV-----~~~~~g~~~CekC~~~-~~~ 71 (172)
T 3u50_C 43 YRCTCQGKSV-----LKYHGDSFFCESCQQF-INP 71 (172)
T ss_dssp EECTTSCCCE-----EEETTTEEEETTTTEE-CCC
T ss_pred hhchhhCCEe-----eeCCCCeEECCCCCCC-CCc
Confidence 5687775422 1245679999999998 544
Done!