Query 004240
Match_columns 766
No_of_seqs 333 out of 621
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 19:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 1E-186 3E-191 1573.9 62.9 680 44-765 2-713 (719)
2 PF07059 DUF1336: Protein of u 100.0 4.1E-74 8.9E-79 591.1 20.0 207 551-757 1-227 (227)
3 cd08904 START_STARD6-like Lipi 100.0 3.6E-35 7.8E-40 298.6 22.9 184 231-428 20-203 (204)
4 cd08914 START_STARD15-like Lip 100.0 1.6E-34 3.4E-39 298.4 21.6 190 202-410 26-223 (236)
5 cd08873 START_STARD14_15-like 100.0 1.1E-33 2.3E-38 292.7 21.6 179 200-396 23-205 (235)
6 cd08913 START_STARD14-like Lip 100.0 4.4E-33 9.5E-38 289.4 21.1 184 202-403 29-217 (240)
7 cd08868 START_STARD1_3_like Ch 100.0 6E-32 1.3E-36 274.3 24.4 186 229-430 20-207 (208)
8 cd08907 START_STARD8-like C-te 100.0 1.3E-32 2.9E-37 277.3 18.0 178 231-430 25-204 (205)
9 cd08909 START_STARD13-like C-t 100.0 5.9E-32 1.3E-36 274.8 19.9 176 234-430 28-204 (205)
10 cd08902 START_STARD4-like Lipi 100.0 1.1E-31 2.4E-36 270.1 20.1 182 230-428 20-201 (202)
11 cd08869 START_RhoGAP C-termina 100.0 2.5E-31 5.3E-36 268.7 22.5 177 232-430 18-196 (197)
12 cd08906 START_STARD3-like Chol 100.0 2.7E-31 5.8E-36 271.1 21.4 188 227-430 19-208 (209)
13 cd08867 START_STARD4_5_6-like 100.0 6.8E-31 1.5E-35 266.2 23.2 183 232-428 21-205 (206)
14 cd08903 START_STARD5-like Lipi 100.0 2.2E-30 4.8E-35 263.9 23.2 187 231-430 20-207 (208)
15 cd08874 START_STARD9-like C-te 100.0 1.5E-30 3.3E-35 264.9 20.9 193 221-430 8-205 (205)
16 cd08871 START_STARD10-like Lip 100.0 3.4E-29 7.5E-34 256.5 21.1 192 227-432 17-211 (222)
17 smart00234 START in StAR and p 100.0 2.9E-28 6.3E-33 244.5 23.2 178 227-418 13-193 (206)
18 cd08905 START_STARD1-like Chol 100.0 2.6E-28 5.5E-33 249.0 19.8 184 231-430 23-208 (209)
19 cd08872 START_STARD11-like Cer 100.0 9E-28 1.9E-32 249.3 19.2 190 231-431 24-227 (235)
20 PF01852 START: START domain; 100.0 9.7E-27 2.1E-31 232.9 22.9 187 229-432 15-204 (206)
21 cd08908 START_STARD12-like C-t 100.0 2.4E-27 5.3E-32 241.2 18.6 175 234-430 28-203 (204)
22 cd08911 START_STARD7-like Lipi 99.9 1.1E-26 2.4E-31 236.5 21.1 180 231-426 19-202 (207)
23 cd00177 START Lipid-binding ST 99.9 6.1E-25 1.3E-29 215.0 22.8 154 233-399 15-168 (193)
24 cd08910 START_STARD2-like Lipi 99.9 2.5E-25 5.4E-30 226.8 17.2 176 231-427 23-203 (207)
25 cd08876 START_1 Uncharacterize 99.9 1.9E-24 4.2E-29 215.7 21.4 177 231-427 15-193 (195)
26 cd08870 START_STARD2_7-like Li 99.9 7.9E-24 1.7E-28 215.6 21.0 178 233-428 22-206 (209)
27 cd08877 START_2 Uncharacterize 99.9 6.7E-22 1.4E-26 201.9 16.8 179 227-421 16-208 (215)
28 KOG2761 START domain-containin 99.8 2.9E-20 6.4E-25 188.7 17.2 167 229-405 25-195 (219)
29 KOG1739 Serine/threonine prote 99.6 1.1E-15 2.4E-20 167.9 8.5 166 229-399 399-576 (611)
30 cd08875 START_ArGLABRA2_like C 99.5 1.3E-13 2.7E-18 142.8 17.0 135 255-399 56-200 (229)
31 cd08864 SRPBCC_DUF3074 DUF3074 99.1 3E-09 6.5E-14 109.4 17.1 131 286-429 65-207 (208)
32 cd01246 PH_oxysterol_bp Oxyste 99.0 3.1E-09 6.6E-14 92.9 10.0 91 48-152 1-91 (91)
33 smart00233 PH Pleckstrin homol 98.9 1.6E-08 3.5E-13 86.5 12.0 100 47-153 2-101 (102)
34 PF00169 PH: PH domain; Inter 98.9 1.2E-08 2.5E-13 89.3 10.3 100 47-153 2-103 (104)
35 cd01251 PH_centaurin_alpha Cen 98.8 1.5E-08 3.2E-13 93.1 9.6 100 48-154 1-101 (103)
36 cd01260 PH_CNK Connector enhan 98.8 5.4E-08 1.2E-12 87.4 10.1 94 47-152 1-96 (96)
37 cd01257 PH_IRS Insulin recepto 98.6 2.3E-07 5E-12 85.4 10.9 92 46-151 2-100 (101)
38 cd01235 PH_SETbf Set binding f 98.6 3.9E-07 8.4E-12 82.0 9.8 95 48-153 1-101 (101)
39 cd01238 PH_Tec Tec pleckstrin 98.5 4.1E-07 8.9E-12 84.0 9.7 99 48-151 2-105 (106)
40 cd01252 PH_cytohesin Cytohesin 98.5 7.9E-07 1.7E-11 84.0 11.6 95 48-154 2-114 (125)
41 cd01250 PH_centaurin Centaurin 98.5 5E-07 1.1E-11 79.4 9.5 94 48-152 1-94 (94)
42 cd01247 PH_GPBP Goodpasture an 98.5 7.1E-07 1.5E-11 80.4 10.1 87 48-151 1-90 (91)
43 cd01233 Unc104 Unc-104 pleckst 98.5 8.7E-07 1.9E-11 80.8 10.4 95 47-153 3-98 (100)
44 cd00900 PH-like Pleckstrin hom 98.5 6.3E-07 1.4E-11 76.6 8.6 96 48-152 1-99 (99)
45 PF15413 PH_11: Pleckstrin hom 98.5 4.1E-07 8.9E-12 84.9 8.0 96 48-152 1-112 (112)
46 cd01265 PH_PARIS-1 PARIS-1 ple 98.5 9.7E-07 2.1E-11 79.9 9.6 91 48-152 1-93 (95)
47 cd01241 PH_Akt Akt pleckstrin 98.4 3E-06 6.4E-11 77.7 10.3 95 47-152 2-101 (102)
48 cd01266 PH_Gab Gab (Grb2-assoc 98.3 4E-06 8.8E-11 77.4 9.8 96 49-152 2-107 (108)
49 cd01244 PH_RasGAP_CG9209 RAS_G 98.1 9.4E-06 2E-10 74.4 8.8 84 58-152 15-98 (98)
50 cd00821 PH Pleckstrin homology 98.1 1E-05 2.2E-10 68.5 7.9 95 48-152 1-96 (96)
51 PF11274 DUF3074: Protein of u 98.0 0.00018 4E-09 73.0 16.2 127 268-399 13-160 (184)
52 cd01236 PH_outspread Outspread 98.0 2.6E-05 5.5E-10 72.4 9.1 94 48-150 1-101 (104)
53 cd01264 PH_melted Melted pleck 98.0 3.7E-05 8.1E-10 71.0 9.9 97 48-152 2-100 (101)
54 cd01219 PH_FGD FGD (faciogenit 98.0 5.9E-05 1.3E-09 69.1 10.9 97 47-154 3-100 (101)
55 cd01254 PH_PLD Phospholipase D 98.0 3.6E-05 7.9E-10 72.8 9.5 79 66-152 34-121 (121)
56 cd01245 PH_RasGAP_CG5898 RAS G 98.0 3.2E-05 6.8E-10 71.1 8.2 87 50-151 3-97 (98)
57 cd01253 PH_beta_spectrin Beta- 97.9 5.4E-05 1.2E-09 68.9 9.6 95 48-151 1-103 (104)
58 cd07813 COQ10p_like Coenzyme Q 97.9 8.6E-05 1.9E-09 70.1 10.8 110 262-399 2-111 (138)
59 cd01263 PH_anillin Anillin Ple 97.9 5.3E-05 1.2E-09 72.2 8.7 105 46-152 1-122 (122)
60 cd01256 PH_dynamin Dynamin ple 97.9 7.9E-05 1.7E-09 68.2 9.1 96 48-152 3-104 (110)
61 cd01220 PH_CDEP Chondrocyte-de 97.9 0.00014 3E-09 66.8 10.7 96 47-154 3-98 (99)
62 cd08866 SRPBCC_11 Ligand-bindi 97.9 0.00043 9.3E-09 65.3 14.4 141 262-429 2-143 (144)
63 PF15409 PH_8: Pleckstrin homo 97.8 5.1E-05 1.1E-09 68.6 7.4 85 50-152 1-88 (89)
64 KOG2200 Tumour suppressor prot 97.7 8.4E-06 1.8E-10 93.1 0.4 92 321-432 575-666 (674)
65 cd01237 Unc112 Unc-112 pleckst 97.5 0.00046 1E-08 64.3 8.8 91 57-153 12-103 (106)
66 cd07819 SRPBCC_2 Ligand-bindin 97.5 0.0026 5.6E-08 59.1 14.0 135 260-427 3-139 (140)
67 KOG0930 Guanine nucleotide exc 97.5 0.00027 5.9E-09 75.0 7.8 97 46-154 260-376 (395)
68 cd01230 PH_EFA6 EFA6 Pleckstri 97.3 0.0024 5.3E-08 60.5 10.7 99 49-154 3-112 (117)
69 cd05018 CoxG Carbon monoxide d 97.2 0.008 1.7E-07 56.1 12.9 114 261-399 3-116 (144)
70 PF12814 Mcp5_PH: Meiotic cell 96.9 0.0084 1.8E-07 57.1 10.6 103 49-154 12-122 (123)
71 cd08861 OtcD1_ARO-CYC_like N-t 96.8 0.019 4.2E-07 53.9 12.4 110 263-399 3-114 (142)
72 cd07817 SRPBCC_8 Ligand-bindin 96.6 0.066 1.4E-06 49.7 14.3 108 261-399 2-109 (139)
73 cd08860 TcmN_ARO-CYC_like N-te 96.6 0.087 1.9E-06 51.4 15.1 137 263-430 5-144 (146)
74 PF10604 Polyketide_cyc2: Poly 96.4 0.31 6.6E-06 44.9 17.3 135 261-428 4-138 (139)
75 cd07821 PYR_PYL_RCAR_like Pyra 96.4 0.13 2.9E-06 47.3 14.6 137 261-428 3-139 (140)
76 PRK10724 hypothetical protein; 95.8 0.24 5.1E-06 49.3 14.0 114 258-399 14-127 (158)
77 PF03364 Polyketide_cyc: Polyk 95.6 0.21 4.6E-06 46.2 12.1 109 267-399 1-109 (130)
78 cd01224 PH_Collybistin Collybi 95.2 0.35 7.5E-06 45.7 11.9 100 47-151 3-105 (109)
79 PF15410 PH_9: Pleckstrin homo 95.2 0.16 3.4E-06 48.0 9.8 99 48-153 2-118 (119)
80 cd01239 PH_PKD Protein kinase 95.0 0.087 1.9E-06 49.9 7.5 98 48-152 2-117 (117)
81 cd07812 SRPBCC START/RHO_alpha 94.2 2.2 4.7E-05 37.7 14.3 111 262-399 2-114 (141)
82 cd08865 SRPBCC_10 Ligand-bindi 94.0 1.5 3.2E-05 40.2 13.3 37 262-300 2-38 (140)
83 KOG3845 MLN, STAR and related 93.4 0.005 1.1E-07 65.2 -4.9 156 235-399 27-182 (241)
84 KOG0690 Serine/threonine prote 92.5 0.17 3.7E-06 55.9 5.2 101 44-154 13-117 (516)
85 cd07823 SRPBCC_5 Ligand-bindin 92.4 3.4 7.4E-05 39.5 13.4 140 262-428 2-144 (146)
86 cd08862 SRPBCC_Smu440-like Lig 91.6 8.4 0.00018 35.5 14.8 40 261-302 3-42 (138)
87 cd01218 PH_phafin2 Phafin2 Pl 91.3 1.7 3.6E-05 40.7 9.5 94 46-156 4-101 (104)
88 cd01223 PH_Vav Vav pleckstrin 91.2 0.95 2.1E-05 43.2 7.9 88 65-154 20-112 (116)
89 cd07824 SRPBCC_6 Ligand-bindin 90.9 5.3 0.00011 38.2 13.0 37 262-300 4-40 (146)
90 cd07818 SRPBCC_1 Ligand-bindin 90.3 12 0.00026 35.4 14.8 39 260-300 3-41 (150)
91 cd01234 PH_CADPS CADPS (Ca2+-d 89.8 0.44 9.5E-06 44.7 4.2 94 48-153 4-110 (117)
92 cd01221 PH_ephexin Ephexin Ple 88.9 4.1 8.9E-05 39.4 10.3 95 48-150 5-119 (125)
93 PF15408 PH_7: Pleckstrin homo 88.4 0.33 7.2E-06 43.9 2.3 92 49-150 1-94 (104)
94 cd07822 SRPBCC_4 Ligand-bindin 88.4 20 0.00043 32.8 14.7 36 261-298 2-37 (141)
95 cd01261 PH_SOS Son of Sevenles 88.0 3.4 7.3E-05 39.2 9.0 100 47-154 5-110 (112)
96 PTZ00267 NIMA-related protein 86.8 1.6 3.4E-05 50.2 7.3 99 44-153 375-476 (478)
97 cd01243 PH_MRCK MRCK (myotonic 86.3 9.4 0.0002 36.8 10.9 106 46-152 2-118 (122)
98 cd01222 PH_clg Clg (common-sit 86.2 5.9 0.00013 36.6 9.3 92 47-154 5-96 (97)
99 cd01259 PH_Apbb1ip Apbb1ip (Am 85.2 2.9 6.3E-05 39.7 6.8 105 47-154 1-109 (114)
100 KOG1090 Predicted dual-specifi 83.6 0.96 2.1E-05 55.7 3.6 96 44-153 1632-1731(1732)
101 KOG2059 Ras GTPase-activating 82.5 2.5 5.3E-05 50.8 6.3 103 42-154 561-665 (800)
102 cd01242 PH_ROK Rok (Rho- assoc 80.4 14 0.0003 35.2 9.3 94 47-153 1-110 (112)
103 PF06240 COXG: Carbon monoxide 80.4 52 0.0011 31.5 13.7 111 264-399 2-112 (140)
104 cd07816 Bet_v1-like Ligand-bin 78.5 68 0.0015 31.2 14.2 119 261-398 3-122 (148)
105 PF14593 PH_3: PH domain; PDB: 76.9 6.2 0.00013 37.0 5.9 89 44-156 11-102 (104)
106 cd07825 SRPBCC_7 Ligand-bindin 76.7 65 0.0014 30.0 15.7 30 261-292 2-31 (144)
107 cd01225 PH_Cool_Pix Cool (clon 74.6 10 0.00022 36.1 6.7 79 62-151 25-107 (111)
108 cd01249 PH_oligophrenin Oligop 72.4 31 0.00067 32.5 9.2 95 48-150 1-102 (104)
109 cd01232 PH_TRIO Trio pleckstri 65.7 43 0.00093 31.9 8.9 90 63-154 22-113 (114)
110 KOG4236 Serine/threonine prote 65.6 4.7 0.0001 47.5 2.9 38 41-81 408-445 (888)
111 cd07820 SRPBCC_3 Ligand-bindin 64.5 1.3E+02 0.0027 28.3 13.3 38 263-302 3-40 (137)
112 KOG3640 Actin binding protein 63.9 18 0.0004 45.0 7.4 115 38-155 982-1108(1116)
113 PLN02866 phospholipase D 62.0 27 0.00058 44.4 8.5 80 66-154 219-308 (1068)
114 COG2867 Oligoketide cyclase/li 59.6 1E+02 0.0023 30.8 10.5 110 259-399 2-115 (146)
115 cd07814 SRPBCC_CalC_Aha1-like 55.6 1.6E+02 0.0036 26.8 14.3 30 261-292 2-31 (139)
116 TIGR01599 PYST-A Plasmodium yo 50.5 3.3E+02 0.0072 28.8 19.9 113 259-376 59-201 (208)
117 COG5637 Predicted integral mem 49.0 2E+02 0.0043 30.0 10.8 135 260-430 71-210 (217)
118 cd01248 PH_PLC Phospholipase C 43.9 81 0.0018 29.4 6.9 95 51-151 11-114 (115)
119 cd01227 PH_Dbs Dbs (DBL's big 43.7 2.7E+02 0.0058 27.4 10.5 90 65-157 29-119 (133)
120 cd01258 PH_syntrophin Syntroph 42.9 70 0.0015 30.4 6.2 99 50-151 3-107 (108)
121 cd01262 PH_PDK1 3-Phosphoinosi 41.7 76 0.0016 29.2 6.0 75 59-152 10-87 (89)
122 COG3427 Carbon monoxide dehydr 40.3 2.5E+02 0.0055 28.1 9.9 42 261-307 3-44 (146)
123 KOG3751 Growth factor receptor 37.9 1E+02 0.0022 36.7 7.6 109 43-154 314-425 (622)
124 KOG1117 Rho- and Arf-GTPase ac 37.2 49 0.0011 41.2 5.2 83 61-152 1047-1130(1186)
125 KOG4424 Predicted Rho/Rac guan 35.1 87 0.0019 37.6 6.6 95 47-154 273-370 (623)
126 cd08893 SRPBCC_CalC_Aha1-like_ 27.4 56 0.0012 29.9 2.9 30 261-292 2-31 (136)
127 KOG1264 Phospholipase C [Lipid 27.1 88 0.0019 39.0 5.0 46 115-160 872-917 (1267)
128 KOG1451 Oligophrenin-1 and rel 26.2 2.2E+02 0.0047 34.6 7.8 105 39-152 258-366 (812)
129 COG3832 Uncharacterized conser 25.7 6.1E+02 0.013 24.6 10.0 32 258-291 7-38 (149)
130 KOG1117 Rho- and Arf-GTPase ac 23.7 1.8E+02 0.0039 36.7 6.7 97 48-152 494-600 (1186)
131 cd08899 SRPBCC_CalC_Aha1-like_ 22.9 68 0.0015 31.2 2.7 31 259-291 11-41 (157)
132 PTZ00283 serine/threonine prot 22.4 94 0.002 36.2 4.1 39 113-153 451-489 (496)
133 cd08898 SRPBCC_CalC_Aha1-like_ 22.1 83 0.0018 29.2 3.0 30 261-292 3-32 (145)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=1.3e-186 Score=1573.87 Aligned_cols=680 Identities=32% Similarity=0.572 Sum_probs=604.1
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEe
Q 004240 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (766)
Q Consensus 44 ~~~~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~y 123 (766)
+.+.|||||||||+||||++|||+|||||+|++|+|||++|+++ ++|||||+||+||||||+|||+|||++||||+||
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~--~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Y 79 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY 79 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc--cccceeeccCCCceEeecCceEEcCceEEEEEEe
Confidence 46779999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred ecCCcCcceeeeccCHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCCccccccccc-------ccCCCCc
Q 004240 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGG-------------SARNKLNMETEI-------NLDGHRP 183 (766)
Q Consensus 124 n~~~~~~~~~~aa~~~eea~~W~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-------~~~~~~~ 183 (766)
|+++|++||+|||+|+|||++||+||++|++|++......+ .+++.++++.+. +.+.+++
T Consensus 80 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 159 (719)
T PLN00188 80 NKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRD 159 (719)
T ss_pred cCCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCcc
Confidence 99999999999999999999999999999998744433222 122233344432 2344444
Q ss_pred ccccccccceeEEeecCCCCCcccCCCCCCCCccCccccCCcccccccCCCCEEEEEeCCEEEEEEecCCC---CCcceE
Q 004240 184 RVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSK---SGRGVL 260 (766)
Q Consensus 184 ~~~~~~~~~~~~~~~g~g~~~~~~~w~~~~~~~~~~ls~~~~~~~~~a~sgWkl~~~kngVrVy~~~~~~~---~~~~~~ 260 (766)
+.|++|||+|||++.++|+..... +++|+++++++++.+.|+|++|+||+|||++..++. ..++++
T Consensus 160 --------~~r~~tig~gp~~s~~~~t~~~~~---~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~~~~~~ 228 (719)
T PLN00188 160 --------LLRRTTIGNGPPDSVLDWTKEFDS---ELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRA 228 (719)
T ss_pred --------cceeeeccCCCcchhcccccccCc---cccccCCCccccccCCeEEEEeeccceeehhhhccccccccCCce
Confidence 778889999999999999996655 888999999999999999999999999999988764 566799
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCe
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGs 340 (766)
||++|+|+++|++||+.||+++. .|.+||.++.++++||+||+||||+|.++++.|+|++++|||||++|+|++++||+
T Consensus 229 mKavGVV~aspE~Ifd~Vm~~~~-~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGs 307 (719)
T PLN00188 229 MKAVGVVEATCEEIFELVMSMDG-TRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 307 (719)
T ss_pred eEEEEEecCCHHHHHHHHhccCc-ccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCc
Confidence 99999999999999999999987 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCCcccchhhhHHHHHHH
Q 004240 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (766)
Q Consensus 341 YVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~ 420 (766)
|+|+++||+||+|||++|||||++++|||+|.|++++ +++++|+|+|++|+|+|||+ ++|+++++++++++||++
T Consensus 308 Yvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~--~g~~r~lv~~~lqtDlkGW~---~~y~~s~~~~~~l~mL~~ 382 (719)
T PLN00188 308 YVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPR--NGRPRTQVQHLMQIDLKGWG---VGYIPSFQQHCLLQMLNS 382 (719)
T ss_pred EEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCC--CCCCceEEEEEEEEccCccc---cccCccccccchHHHHHH
Confidence 9999999999999999999999999999999999874 45689999999999999999 899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCccceeeeccccccCCCCCC--------ccchhhhhhhccccccCCCCCCCCCCCCCCC-CCch
Q 004240 421 VAGLKEYIGANPALKNESATVVVHSKFSDVSSSNGY--------YEDVEVQEQFYDAIAADSSSSEDEDSDDSND-PDKK 491 (766)
Q Consensus 421 Va~LRe~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~ 491 (766)
||+|||||+++++.++.+|++++.+|+....+++.+ ..+.+..++|+++.. ++++|+|++ ++++
T Consensus 383 VAgLrE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~dE~~~~~e 455 (719)
T PLN00188 383 VAGLREWFSQTDERGAPPRIPVMVNMASASVSSKKNQKPQESSPSLDQTNAASRNSVMM-------DEDSDDDEEFQIPE 455 (719)
T ss_pred HHHHHHHHhcCcccCccccceeecccccccccccccccccccccccccccccchhhhhh-------ccccccchhccCCC
Confidence 999999999999999999999999886552222111 112223355655543 333333333 3443
Q ss_pred hhhhhcccchhhhhhhhhcccCCCCCCcccCCCCCCcccCCCccccccccCCCCCCCCcccCCCCCceeecCCCCcccCc
Q 004240 492 DKKVKLKNVSWAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYLKDNA 571 (766)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~Ws~p~~~~F~VRG~~Yl~dk~ 571 (766)
..++..+.++ .. ......+.+++.+|+++|+|+|++++++++.+||++|++++|+|||+|||+||+
T Consensus 456 ~~~~~~~~k~-------------~~-~~~~~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG~~Yl~Dk~ 521 (719)
T PLN00188 456 SEQEPETTKN-------------ET-KDTAMEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRSKNFCYDKS 521 (719)
T ss_pred cccccccccc-------------cc-cccccccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcCCCcccCCc
Confidence 3332221111 00 012236678999999999999999999999999999999999999999999999
Q ss_pred cccCCcCcceEeEEeEEeeCCcccccccCCCcccccccCCCCCeEEEEEEEcCCCCCceEEEEEeecCCCCchhhHhhhh
Q 004240 572 KVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFV 651 (766)
Q Consensus 572 Kvpa~~~l~~lv~vD~f~s~~r~dhia~~~~~~~q~~~~~~~Pf~fiVN~qvP~~p~~slV~Yf~~~~~l~~~~Ll~rF~ 651 (766)
|+||+++||+|+|||||++++|+||||+||.|++|.+.++ .||+|||||||||+|+||+|+||++ +++.+++||+||+
T Consensus 522 KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k-~~F~fiVNlQvPg~~~ys~V~Yf~~-~~l~~~sLl~rF~ 599 (719)
T PLN00188 522 KIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK-GLFSFVVNLQVPGSTHYSMVFYFVT-KELVPGSLLQRFV 599 (719)
T ss_pred cccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc-CCcEEEEEEEccCCCceEEEEEEec-cCCCCchHHHHhc
Confidence 9999999999999999999999999999999999986544 5899999999999999999999998 6688999999999
Q ss_pred cCCccccccceEEeeeeccccceeeeccCCceeeecceeeeEEeecCCeEEEEEEecChHHHHHHHHHhhcccceEEEEE
Q 004240 652 DGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDL 731 (766)
Q Consensus 652 ~gdd~fRn~RfKlIp~Vv~g~wiVk~avg~kP~LlGk~l~~~y~~g~nYlEiDvDi~sS~vAr~v~~l~~g~~~~lvvD~ 731 (766)
+|||+|||+||||||+|++|||||||+||+|||||||+|+|+||+|+||||||||||||+||++|++||+||+++|||||
T Consensus 600 ~GDD~fRnsRfKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g~~~~lvvD~ 679 (719)
T PLN00188 600 DGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTLVVDM 679 (719)
T ss_pred cCchhHhhCceEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHhhhhheEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCccccccceeceEEeCccCCCCCccCC
Q 004240 732 AILIEAKEEEELPEYILGTVQLNRVRLDAAVPLE 765 (766)
Q Consensus 732 gf~Ieg~~~eELPE~lLG~~Rl~~~d~~~A~~~~ 765 (766)
||+|||+++|||||+|||||||++||+++|+..+
T Consensus 680 af~ie~~~~eELPE~llG~~Rl~~i~~~~A~~~~ 713 (719)
T PLN00188 680 AFLVQANTYEELPERLIGAVRVSHVELSSAIVPK 713 (719)
T ss_pred EEEEecCChhhCchhheeeEEecccchhhccccC
Confidence 9999999999999999999999999999998764
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=4.1e-74 Score=591.08 Aligned_cols=207 Identities=49% Similarity=0.877 Sum_probs=202.8
Q ss_pred ccCCCCCceeecCCCCcccCccccCCcCcceEeEEeEEeeCCcccccccCCCcccccccCCCCCeEEEEEEEcCC-----
Q 004240 551 WTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPG----- 625 (766)
Q Consensus 551 Ws~p~~~~F~VRG~~Yl~dk~Kvpa~~~l~~lv~vD~f~s~~r~dhia~~~~~~~q~~~~~~~Pf~fiVN~qvP~----- 625 (766)
||+|++++|+|||+|||+||+|+||+++||+|+|||||++++|++|||+++.++++.....+.||+||||||||+
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~~ 80 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPSM 80 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred -----CCCceEEEEEeecCCCCc------hhhHhhhhcCC---ccccccceEEeeeeccccceeeecc-CCceeeeccee
Q 004240 626 -----KPNYSLVLYYASERPVNK------NSLLGKFVDGT---DMFRDARFKLIPSIAEGYWMVKRAV-GTKACLLGKAV 690 (766)
Q Consensus 626 -----~p~~slV~Yf~~~~~l~~------~~Ll~rF~~gd---d~fRn~RfKlIp~Vv~g~wiVk~av-g~kP~LlGk~l 690 (766)
.|+||+|+||++++++.. .+||+||++|| |+|||+||||||+|+|||||||++| |+||||||+++
T Consensus 81 f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~kP~lig~~~ 160 (227)
T PF07059_consen 81 FGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGKPVLIGKKL 160 (227)
T ss_pred ccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCCceeecCcc
Confidence 999999999999887765 79999999999 9999999999999999999999999 99999999999
Q ss_pred eeEEeecCCeEEEEEEecChHHHHHHHHHhhcccceEEEEEEEEeecCCccccccceeceEEeCccC
Q 004240 691 TCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILIEAKEEEELPEYILGTVQLNRVR 757 (766)
Q Consensus 691 ~~~y~~g~nYlEiDvDi~sS~vAr~v~~l~~g~~~~lvvD~gf~Ieg~~~eELPE~lLG~~Rl~~~d 757 (766)
+|+||+|+||||||||||||++||+++++|+||+++|||||||+|||+++|||||+||||+||+|||
T Consensus 161 ~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~~Rl~~id 227 (227)
T PF07059_consen 161 QHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGCVRLNHID 227 (227)
T ss_pred ceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeEEEeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 3
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=3.6e-35 Score=298.56 Aligned_cols=184 Identities=20% Similarity=0.216 Sum_probs=163.8
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEE
Q 004240 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (766)
Q Consensus 231 a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY 310 (766)
.++||++.+.++|+.||++... ...++++|++|+|+++|++||+++.+... |.+||+++.++++||+||+||+|+|
T Consensus 20 ~~~gWk~~k~~~~~~v~~k~~~--~~~gkl~k~egvi~~~~e~v~~~l~~~e~--r~~Wd~~~~~~~iie~Id~~T~I~~ 95 (204)
T cd08904 20 DTSGWKVVKTSKKITVSWKPSR--KYHGNLYRVEGIIPESPAKLIQFMYQPEH--RIKWDKSLQVYKMLQRIDSDTFICH 95 (204)
T ss_pred cccCCeEEecCCceEEEEEEcC--CCCceEEEEEEEecCCHHHHHHHHhccch--hhhhcccccceeeEEEeCCCcEEEE
Confidence 3589999999999999999652 24569999999999999999999998755 9999999999999999999999999
Q ss_pred EEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEE
Q 004240 311 GTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQM 390 (766)
Q Consensus 311 ~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I 390 (766)
.++++.. .+.++|||||.+|+|++.+++.|++++.||+||+|||++|||||+++++||+|+|+++ ++++|++|++
T Consensus 96 ~~~~~~~-~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~----~p~~t~l~~~ 170 (204)
T cd08904 96 TITQSFA-MGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPE----NPAYSKLVMF 170 (204)
T ss_pred Eeccccc-CCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCC----CCCceEEEEE
Confidence 9988732 2469999999999999977789999999999999999999999999999999999987 4578999999
Q ss_pred EeeecCCccccccCCcccchhhhHHHHHHHHHHHHHHh
Q 004240 391 LEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 428 (766)
Q Consensus 391 ~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~Va~LRe~~ 428 (766)
+|+|||||+ |+ +..++.+...|++++..|++-+
T Consensus 171 ~~~DlkG~l---P~--~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 171 VQPELRGNL---SR--SVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EEeCCCCCC---CH--HHHHHHhHHHHHHHHHHHHHhc
Confidence 999999999 54 4456788888889999988643
No 4
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=100.00 E-value=1.6e-34 Score=298.44 Aligned_cols=190 Identities=16% Similarity=0.175 Sum_probs=168.4
Q ss_pred CCCcccCCCCCCCCccCccccCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHh
Q 004240 202 PETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL 279 (766)
Q Consensus 202 ~~~~~~~w~~~~~~~~~~ls~~~~~--~~~~a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~ 279 (766)
-..+++|||++||+ ||||+|++ +.++++.+|++.++++||+||+++ ++..+.+|+++.+++|++++|++|.
T Consensus 26 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~----~s~~l~fk~e~~vdvs~~~l~~LL~ 98 (236)
T cd08914 26 EVPLCIHWDIGNQA---SLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE----EHDVLSVWVEKHVKRPAHLAYRLLS 98 (236)
T ss_pred cCceecccCCCceE---EEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec----CCCcEEEEEEEEEcCCHHHHHHHHh
Confidence 45689999999999 99999999 788889999999999999999995 2334799999999999999999999
Q ss_pred cCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcc-CCe-EEEEEeeccCCCCCCCC
Q 004240 280 NLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ-DGT-YTILQFPAVHKKRPPKS 357 (766)
Q Consensus 280 d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~-dGs-YVIa~~SV~Hp~~Pp~~ 357 (766)
|.+. |.+||.++.++++|+++|++.+ +|+..+|.|. ++++||||++++|++.. +|. |+|..+||.||.+||.+
T Consensus 99 D~~~--r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw~--Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~k 173 (236)
T cd08914 99 DFTK--RPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIVN--NDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSP 173 (236)
T ss_pred Chhh--hchhHHhhceEEEEEEeCCCcC-EEEEecCCCC--CCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCC
Confidence 9988 9999999999999999999988 6777776542 58999999999998765 774 99999999999999999
Q ss_pred CeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccc-cccC---Ccccch
Q 004240 358 GYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCR-WKKN---SSTKFE 410 (766)
Q Consensus 358 GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi~-w~p~---~~s~~~ 410 (766)
||||++.+++||+|+|+++ ++|+|||++|+|| ||+| |..| |.+.|+
T Consensus 174 g~VRv~~~~~G~~I~pl~~------~~~~VtY~~~~dP-g~lp~~~~n~~~~~~~~~ 223 (236)
T cd08914 174 QYIRSEIICAGFLIHAIDS------NSCTVSYFNQISA-SILPYFAGNLGGWSKSIE 223 (236)
T ss_pred CcEEeEEEEEEEEEEEcCC------CcEEEEEEEEcCC-ccchheEEecchhhhHHH
Confidence 9999999999999999875 6899999999999 9994 5433 444444
No 5
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=100.00 E-value=1.1e-33 Score=292.67 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=161.1
Q ss_pred CCCCCcccCCCCCCCCccCccccCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHH
Q 004240 200 HGPETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEV 277 (766)
Q Consensus 200 ~g~~~~~~~w~~~~~~~~~~ls~~~~~--~~~~a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~ 277 (766)
+.-..+|++||++||+ ||||+|++ +.+.++++|++.++++||+||+++. ...+.+|++++|+++++++|++
T Consensus 23 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~----s~~l~fk~e~~vd~s~~~v~dl 95 (235)
T cd08873 23 QREVPLSVAWDRSNQM---YLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQ----DGVLSFCVELKVQTCASDAFDL 95 (235)
T ss_pred CccCceEcccCccccE---EEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecC----CCceEEEEEEEecCCHHHHHHH
Confidence 4456699999999999 99999999 8999999999999999999999963 3347899999999999999999
Q ss_pred HhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEc-cC-CeEEEEEeeccCCCCCC
Q 004240 278 VLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG-QD-GTYTILQFPAVHKKRPP 355 (766)
Q Consensus 278 L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~-~d-GsYVIa~~SV~Hp~~Pp 355 (766)
|.|.+. |.+||.++.++++|+++|++..|+|.++.+ |+++++||||++++|++. ++ +.|+|..+||.||.+||
T Consensus 96 L~D~~~--R~~WD~~~~e~evI~~id~d~~iyy~~~p~---PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp 170 (235)
T cd08873 96 LSDPFK--RPEWDPHGRSCEEVKRVGEDDGIYHTTMPS---LTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQ 170 (235)
T ss_pred HhCcch--hhhhhhcccEEEEEEEeCCCcEEEEEEcCC---CCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCC
Confidence 999987 999999999999999999887777766554 446999999999999983 33 46999999999999999
Q ss_pred CCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecC
Q 004240 356 KSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSS 396 (766)
Q Consensus 356 ~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~K 396 (766)
++|||||+..++||+|+|+++ ++|.|||++|+||+
T Consensus 171 ~kgyVR~~~~~ggW~I~p~~~------~~t~VtY~~~~dPg 205 (235)
T cd08873 171 TPGYSRTEVACAGFVIRQDCG------TCTEVSYYNETNPK 205 (235)
T ss_pred CCCeEEEEEEeeeEEEEECCC------CcEEEEEEEEcCCC
Confidence 999999999999999999875 58999999999994
No 6
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=100.00 E-value=4.4e-33 Score=289.39 Aligned_cols=184 Identities=19% Similarity=0.196 Sum_probs=164.2
Q ss_pred CCCcccCCCCCCCCccCccccCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHh
Q 004240 202 PETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL 279 (766)
Q Consensus 202 ~~~~~~~w~~~~~~~~~~ls~~~~~--~~~~a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~ 279 (766)
-..+|+|||++||+ ||||+|++ +.+.++++|++.++++||+||+++. ...+.||++++|++|++++|++|.
T Consensus 29 ~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~----s~~~~fK~e~~vd~s~e~v~~lL~ 101 (240)
T cd08913 29 EVPLSVPWDPSNQV---YLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEE----DKFLSFKVEMVVHVDAAQAFLLLS 101 (240)
T ss_pred cCceecccCcccee---EEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeC----CCccEEEEEEEEcCCHHHHHHHHh
Confidence 45699999999999 99999999 8999999999999999999999753 334789999999999999999999
Q ss_pred cCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEc-cCC-eEEEEEeeccCCCCCCCC
Q 004240 280 NLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG-TYTILQFPAVHKKRPPKS 357 (766)
Q Consensus 280 d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~-~dG-sYVIa~~SV~Hp~~Pp~~ 357 (766)
|.+. |.+||.++.++++|+++|++. .+|++..+.| ++++++||||++++|++. ++| .|+|+.+|+.||++||++
T Consensus 102 D~~~--r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~k 177 (240)
T cd08913 102 DLRR--RPEWDKHYRSCELVQQVDEDD-AIYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTP 177 (240)
T ss_pred Chhh--hhhhHhhccEEEEEEecCCCc-EEEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCC
Confidence 9987 999999999999999999985 5687777765 468999999999999874 333 799999999999999999
Q ss_pred CeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccc-ccc
Q 004240 358 GYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCR-WKK 403 (766)
Q Consensus 358 GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi~-w~p 403 (766)
|||||+..++||+|.|.++ +.|+|||+.|+|+ |++| |+.
T Consensus 178 gyVR~~~~~ggw~i~p~~~------~~t~vtY~~~~dP-G~LP~~~~ 217 (240)
T cd08913 178 EYTRGETLCSGFCIWEESD------QLTKVSYYNQATP-GVLPYIST 217 (240)
T ss_pred CcEEeeecccEEEEEECCC------CcEEEEEEEEeCC-ccccHHHh
Confidence 9999999999999999875 6899999999999 5883 443
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=6e-32 Score=274.29 Aligned_cols=186 Identities=23% Similarity=0.398 Sum_probs=160.5
Q ss_pred cccCCCCEEEEEeC-CEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHh-cCCCcccccccCCCCceEEEEeecCce
Q 004240 229 AIEAHEWKCVRTLN-GVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHY 306 (766)
Q Consensus 229 ~~a~sgWkl~~~kn-gVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~-d~~~~~R~~WD~~~~e~eVVE~lD~~t 306 (766)
+....+|++...++ |++||++..+. .++++|++++|+++|++||+.|+ |.+. |++||+++.++++|+++|+++
T Consensus 20 ~~~~~~W~l~~~~~~~i~i~~r~~~~---~~~~~k~~~~i~~~~~~v~~~l~~d~~~--~~~Wd~~~~~~~~i~~~d~~~ 94 (208)
T cd08868 20 ILTDPGWKLEKNTTWGDVVYSRNVPG---VGKVFRLTGVLDCPAEFLYNELVLNVES--LPSWNPTVLECKIIQVIDDNT 94 (208)
T ss_pred HhcCCCceEEEecCCCCEEEEEEcCC---CceEEEEEEEEcCCHHHHHHHHHcCccc--cceecCcccceEEEEEecCCc
Confidence 34466999999997 99999997542 34799999999999999998665 6555 999999999999999999999
Q ss_pred EEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceE
Q 004240 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (766)
Q Consensus 307 DIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~ 386 (766)
+|+|+++++. +|+++++||||++|+|++.+ +.|+|+..|+.||.+|+++|||||+...+||+|+|+++ ++++|.
T Consensus 95 ~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~----~~~~t~ 168 (208)
T cd08868 95 DISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPN----NPNKCN 168 (208)
T ss_pred EEEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCC----CCCceE
Confidence 9999988875 35679999999999999876 57999999999999999999999999999999999985 357899
Q ss_pred EEEEEeeecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004240 387 VTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (766)
Q Consensus 387 VT~I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~a 430 (766)
|||++++|||||+ |.|. +...+...++..+++||++++.
T Consensus 169 v~~~~~~Dp~G~i---P~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 169 FTWLLNTDLKGWL---PQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEEECCCCCC---ccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999 5433 3344555667899999999864
No 8
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=1.3e-32 Score=277.26 Aligned_cols=178 Identities=15% Similarity=0.197 Sum_probs=157.3
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHH-HHHHHHhcCCCcccccccCCCCceEEEEeecCceEEE
Q 004240 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASAD-TVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (766)
Q Consensus 231 a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe-~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIv 309 (766)
...||.....++++.|+.+..+ .+....+.|+...|+++|. .++++|.+ |+.||.++.+.++||+||+++||+
T Consensus 25 k~kgW~~~~~~~~vev~~kk~~-d~~~l~lwk~s~ei~~~p~~vl~rvL~d-----R~~WD~~m~e~~~Ie~Ld~n~dI~ 98 (205)
T cd08907 25 RFKGWHSAPGPDNTELACKKVG-DGHPLRLWKVSTEVEAPPSVVLQRVLRE-----RHLWDEDLLHSQVIEALENNTEVY 98 (205)
T ss_pred ccCCceeecCCCCcEEEEEeCC-CCCceEEEEEEEEecCCCHHHHHHHhhc-----hhhhhHHHHhhhhheeecCCCEEE
Confidence 4679999999999999988543 3456678999999998554 45566654 899999999999999999999999
Q ss_pred EEEeccCcCCCCCCCCeEEEEEEEEEc-cCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEE
Q 004240 310 YGTYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVT 388 (766)
Q Consensus 310 Y~~~kp~~lP~~vspRDFV~LRswRr~-~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT 388 (766)
||+++. |.++++||||++|+|+.. +.|.|+|+++||+|++.||.+| |||.++.+||+|+|+++ ++|+||
T Consensus 99 yY~~~~---~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~------g~s~lt 168 (205)
T cd08907 99 HYVTDS---MAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGM------GRSRLT 168 (205)
T ss_pred EEEecC---CCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCC------CCeEEE
Confidence 999985 357999999999999864 6678999999999999999999 99999999999999985 689999
Q ss_pred EEEeeecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004240 389 QMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (766)
Q Consensus 389 ~I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~a 430 (766)
||+++|++||+ |.|+++..++++++ .+.+||+.|..
T Consensus 169 yi~rvD~rG~~---P~Wynk~~g~~~a~---~l~~ir~sF~~ 204 (205)
T cd08907 169 HICRADLRGRS---PDWYNKVFGHLCAM---EVARIRDSFPT 204 (205)
T ss_pred EEEEeCCCCCC---cHHHHHhHHHHHHH---HHHHHHhhccC
Confidence 99999999999 89999999999996 78999999864
No 9
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=5.9e-32 Score=274.84 Aligned_cols=176 Identities=18% Similarity=0.212 Sum_probs=152.4
Q ss_pred CCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEe
Q 004240 234 EWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTY 313 (766)
Q Consensus 234 gWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~ 313 (766)
||..+...|++.++.+... .+...+++|+++.|+++|++|+..|.+ . |++||.+++++++||++|+|+||+|+++
T Consensus 28 ~w~~~~~~~~~e~~ykK~~-d~~~lk~~r~~~ei~~~p~~VL~~vl~--~--R~~WD~~~~~~~~ie~ld~~tdi~~y~~ 102 (205)
T cd08909 28 GWISCSSSDNTELAYKKVG-DGNPLRLWKVSVEVEAPPSVVLNRVLR--E--RHLWDEDFLQWKVVETLDKQTEVYQYVL 102 (205)
T ss_pred CCcccCCcCCeEEEEecCC-CCCceEEEEEEEEeCCCHHHHHHHHHh--h--HhhHHhhcceeEEEEEeCCCcEEEEEEe
Confidence 5555555555555443222 345567999999999999999888865 3 9999999999999999999999999999
Q ss_pred ccCcCCCCCCCCeEEEEEEEEEc-cCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEe
Q 004240 314 DPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLE 392 (766)
Q Consensus 314 kp~~lP~~vspRDFV~LRswRr~-~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~q 392 (766)
++++ ++++||||++|+|+++ ++|+|+|+++||+|++|||. |||||+++.+||+|+|+++ ++|+|||+++
T Consensus 103 ~~~~---P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~------g~trvt~i~~ 172 (205)
T cd08909 103 NCMA---PHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGS------GKSRLTHICR 172 (205)
T ss_pred ecCC---CCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCC------CCEEEEEEEE
Confidence 9753 5899999999999986 68999999999999999996 9999999999999999986 4899999999
Q ss_pred eecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004240 393 IHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (766)
Q Consensus 393 vD~KGwi~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~a 430 (766)
+|||||+ |.|+++..+|++++ .+.+||+.|..
T Consensus 173 vDpkG~~---P~W~~n~~g~~~~~---~~~~~r~sf~~ 204 (205)
T cd08909 173 VDLKGHS---PEWYNKGFGHLCAA---EAARIRNSFQP 204 (205)
T ss_pred ecCCCCC---hHHHHHhHHHHHHH---HHHHHHhhccC
Confidence 9999999 88889999999996 78999999864
No 10
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.98 E-value=1.1e-31 Score=270.14 Aligned_cols=182 Identities=19% Similarity=0.298 Sum_probs=164.3
Q ss_pred ccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEE
Q 004240 230 IEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (766)
Q Consensus 230 ~a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIv 309 (766)
+..++|++.++++|+.||++... .+.++++|++|+|+..+++|++.|.+... |.+||+++.++++||+||++|.|+
T Consensus 20 ~~~~~Wkl~k~~~~~~v~~k~~~--ef~gkl~R~Egvv~~~~~ev~d~v~~~~~--r~~Wd~~v~~~~Iie~Id~dt~I~ 95 (202)
T cd08902 20 ILEEEWRVAKKSKDVTVWRKPSE--EFGGYLYKAQGVVEDVYNRIVDHIRPGPY--RLDWDSLMTSMDIIEEFEENCCVM 95 (202)
T ss_pred ccccCcEEEEeCCCEEEEEecCC--cCCCceEEEEEEecCCHHHHHHHHhcccc--hhcccchhhheeHhhhhcCCcEEE
Confidence 36789999999999999999663 36779999999999999999999988766 999999999999999999999999
Q ss_pred EEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEE
Q 004240 310 YGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 389 (766)
Q Consensus 310 Y~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~ 389 (766)
|+++... +.+.++|||||.+|++.+.+|| ++.+..|++|+..|| |||||+++++||++.|+++ ++++|.+||
T Consensus 96 ~yvt~~~-~~~iISpRDFVdv~~~~~~~d~-~~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~----~p~k~~~t~ 167 (202)
T cd08902 96 RYTTAGQ-LLNIISPREFVDFSYTTQYEDG-LLSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKD----NPSHSLLTG 167 (202)
T ss_pred EEEcccC-CcCccCccceEEEEEEEEeCCC-eEEEEeeecCCCCCC--CeEeecccccEEEEEECCC----CCCceEEEE
Confidence 7665543 3478999999999999999888 578899999999888 9999999999999999997 568999999
Q ss_pred EEeeecCCccccccCCcccchhhhHHHHHHHHHHHHHHh
Q 004240 390 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 428 (766)
Q Consensus 390 I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~Va~LRe~~ 428 (766)
++|+|+|||+ |+ +.+++.+...|+++...||..+
T Consensus 168 ~lq~DLkG~L---Pq--siIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 168 YIQTDLRGML---PQ--SAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEEecCCCCc---cH--HHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999999 65 7788999999999999999876
No 11
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.98 E-value=2.5e-31 Score=268.69 Aligned_cols=177 Identities=18% Similarity=0.222 Sum_probs=156.3
Q ss_pred CCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEE
Q 004240 232 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYG 311 (766)
Q Consensus 232 ~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~ 311 (766)
..||++...++||+||++..+ .++..+.+|++++|+++|++|++.|++. |.+||+++.++++|+++|++++|+|+
T Consensus 18 ~~~W~~~~~~~gi~I~~k~~~-~~~~l~~~K~~~~v~a~~~~v~~~l~d~----r~~Wd~~~~~~~vie~id~~~~i~y~ 92 (197)
T cd08869 18 SKGWVSVSSSDHVELAFKKVD-DGHPLRLWRASTEVEAPPEEVLQRILRE----RHLWDDDLLQWKVVETLDEDTEVYQY 92 (197)
T ss_pred cCCceEEecCCcEEEEEEeCC-CCCcEEEEEEEEEeCCCHHHHHHHHHHH----HhccchhhheEEEEEEecCCcEEEEE
Confidence 679999999999999999663 2346689999999999999999999863 89999999999999999999999999
Q ss_pred EeccCcCCCCCCCCeEEEEEEEEE-ccCCeEEEEEeeccCC-CCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEE
Q 004240 312 TYDPKYLTRWQSKRDFVFSRQWFR-GQDGTYTILQFPAVHK-KRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 389 (766)
Q Consensus 312 ~~kp~~lP~~vspRDFV~LRswRr-~~dGsYVIa~~SV~Hp-~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~ 389 (766)
++++.| ++++||||++|+|+. .++|.|+|+++||.|| .+|+ |||||+.+.+||+|+|+++ ++|+|||
T Consensus 93 ~~~~p~---pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~------~~t~vty 161 (197)
T cd08869 93 VTNSMA---PHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGS------GKSRVTH 161 (197)
T ss_pred EeeCCC---CCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCC------CCeEEEE
Confidence 998654 589999999999997 4678999999999996 5666 9999999999999999875 5899999
Q ss_pred EEeeecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004240 390 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (766)
Q Consensus 390 I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~a 430 (766)
++|+||+||+ |.|+.+..++++.. .|.+||+.|..
T Consensus 162 ~~~~Dp~G~i---P~wl~N~~~~~~~~---~~~~l~~~~~~ 196 (197)
T cd08869 162 ICRVDLRGRS---PEWYNKVYGHLCAR---ELLRIRDSFRQ 196 (197)
T ss_pred EEEECCCCCC---CceeecchHhHHHH---HHHHHHhhccC
Confidence 9999999999 77777777777774 67899999864
No 12
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=99.98 E-value=2.7e-31 Score=271.06 Aligned_cols=188 Identities=20% Similarity=0.271 Sum_probs=160.1
Q ss_pred cccccCCCCEEEEE-eCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHH-HHHhcCCCcccccccCCCCceEEEEeecC
Q 004240 227 GDAIEAHEWKCVRT-LNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDG 304 (766)
Q Consensus 227 ~~~~a~sgWkl~~~-kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vf-e~L~d~~~~~R~~WD~~~~e~eVVE~lD~ 304 (766)
+.+.+.++|++... +||++||++..+ +.++.||++++|++|++++| ++|.|.+. |.+||.++.++++|+++|+
T Consensus 19 ~~l~~~~~W~l~~~~~~gi~V~s~~~~---~~~~~fk~~~~v~~~~~~l~~~ll~D~~~--~~~W~~~~~~~~vi~~~~~ 93 (209)
T cd08906 19 QILAQEENWKFEKNNDNGDTVYTLEVP---FHGKTFILKAFMQCPAELVYQEVILQPEK--MVLWNKTVSACQVLQRVDD 93 (209)
T ss_pred HHhhcccCCEEEEecCCCCEEEEeccC---CCCcEEEEEEEEcCCHHHHHHHHHhChhh--ccccCccchhhhheeeccC
Confidence 55667889999876 599999997553 22389999999999999998 57889887 9999999999999999999
Q ss_pred ceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCc
Q 004240 305 HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAK 384 (766)
Q Consensus 305 ~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~ 384 (766)
+++|+|.+..| |.++++++||||++|+|++.+++ |+++..|+.|+.+||++|||||+++++||+|.|.+. ++++
T Consensus 94 ~~~i~Y~v~~p-~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~----~~~~ 167 (209)
T cd08906 94 NTLVSYDVAAG-AAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSAS----NPSV 167 (209)
T ss_pred CcEEEEEEccc-cccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCC----CCCc
Confidence 99999954444 44568999999999999998776 999999999999999999999999999999999743 3478
Q ss_pred eEEEEEEeeecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004240 385 CLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (766)
Q Consensus 385 c~VT~I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~a 430 (766)
|+|||++|+|||||+ |.| ...+.+.-.++.++.+||+.++.
T Consensus 168 t~vt~~~~~Dp~G~l---P~~--lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 168 CTFIWILNTDLKGRL---PRY--LIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred eEEEEEEecCCCCCC---CHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 432 13355666777899999998864
No 13
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.97 E-value=6.8e-31 Score=266.19 Aligned_cols=183 Identities=20% Similarity=0.246 Sum_probs=156.9
Q ss_pred CCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhc--CCCcccccccCCCCceEEEEeecCceEEE
Q 004240 232 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLN--LERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (766)
Q Consensus 232 ~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d--~~~~~R~~WD~~~~e~eVVE~lD~~tDIv 309 (766)
..+|++.+.++|++||++.. ....++++|+++.|++++++|+++|++ .. .|.+||+.+.++++|+++|++++|+
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~--~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~--~r~~Wd~~~~~~~~le~id~~~~i~ 96 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPS--TEFTGHLYRAEGIVDALPEKVIDVIIPPCGG--LRLKWDKSLKHYEVLEKISEDLCVG 96 (206)
T ss_pred cCCcEEEEcCCCcEEEEecC--CCCCCEEEEEEEEEcCCHHHHHHHHHhcCcc--ccccccccccceEEEEEeCCCeEEE
Confidence 47999999999999999843 234457899999999999999999998 44 4999999999999999999999999
Q ss_pred EEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEE
Q 004240 310 YGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 389 (766)
Q Consensus 310 Y~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~ 389 (766)
|+..... ..+++++||||++++|++.++|.|+++..||+||.+||.+|||||++..+||+|+|+++ ++++|.+||
T Consensus 97 ~~~~p~~-~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~----~~~~t~~~~ 171 (206)
T cd08867 97 RTITPSA-AMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKG----SPDKSFLVL 171 (206)
T ss_pred EEEcccc-ccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCC----CCCceEEEE
Confidence 9854421 12469999999999999998889999999999999999999999999999999999875 346899999
Q ss_pred EEeeecCCccccccCCcccchhhhHHHHHHHHHHHHHHh
Q 004240 390 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 428 (766)
Q Consensus 390 I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~Va~LRe~~ 428 (766)
++|+|||||+ |.|. +...+..+++..+..||.++
T Consensus 172 ~~~~DpkG~i---P~~l--vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 172 YVQTDLRGMI---PQSL--VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEEeccCCCC---cHHH--HHhhhhhhHHHHHHHHHHhc
Confidence 9999999999 4422 33455566778889999875
No 14
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.97 E-value=2.2e-30 Score=263.89 Aligned_cols=187 Identities=20% Similarity=0.239 Sum_probs=157.3
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEE
Q 004240 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (766)
Q Consensus 231 a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY 310 (766)
.++||++.+.+||++||++... ...+..+|++++|+++++++|++|+|.....|.+||.++.++++||++|+++.|+|
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~--~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~ 97 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSA--EFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCR 97 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecC--CCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEE
Confidence 4679999999999999998542 12336799999999999999999997632147999999999999999999999988
Q ss_pred EEeccCcC-CCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEE
Q 004240 311 GTYDPKYL-TRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 389 (766)
Q Consensus 311 ~~~kp~~l-P~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~ 389 (766)
..+ .|. .+.+++||||++|+|++.+||.|++...|+.||.|||++|||||+..++||++.|++. ++++|.|||
T Consensus 98 ~~~--p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~----~~~~t~v~~ 171 (208)
T cd08903 98 TVT--PSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG----EPDKTQLVS 171 (208)
T ss_pred Eec--chhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC----CCCceEEEE
Confidence 733 232 1459999999999999999999999999999999999999999999999999999985 347899999
Q ss_pred EEeeecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004240 390 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (766)
Q Consensus 390 I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~a 430 (766)
++++|||||+ |.|. ..+.+.-.|..++.+||..++.
T Consensus 172 ~~~~DpkG~i---P~~l--vn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 172 FFQTDLSGYL---PQTV--VDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEEeccCCCc---CHHH--HHHHhhHHHHHHHHHHHHHHhh
Confidence 9999999999 4422 2344555666899999998864
No 15
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=1.5e-30 Score=264.93 Aligned_cols=193 Identities=15% Similarity=0.151 Sum_probs=162.9
Q ss_pred ccCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEE
Q 004240 221 FFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLEL 298 (766)
Q Consensus 221 s~~~~~--~~~~a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eV 298 (766)
.+.|++ ++|.+++||++.++++||+||+++.+ + .-..+|++++|++++++|+++|.|... |++||.++.++++
T Consensus 8 ~~~n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~--~-~~~~~~ge~~v~as~~~v~~ll~D~~~--r~~Wd~~~~~~~v 82 (205)
T cd08874 8 CSVNLSNLDQCQATAGWSYQCLEKDVVIYYKVFN--G-TYHGFLGAGVIKAPLATVWKAVKDPRT--RFLYDTMIKTARI 82 (205)
T ss_pred hhhhHHHHHhhhccCCcEEEecCCCEEEEEecCC--C-CcceEEEEEEEcCCHHHHHHHHhCcch--hhhhHHhhhheee
Confidence 345666 88999999999999999999999643 2 447889999999999999999999987 9999999999999
Q ss_pred EEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCC-CeEeEEEcceeEEEEecCCC
Q 004240 299 VDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKS-GYRRTKINPSTWEIRSLNLP 377 (766)
Q Consensus 299 VE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~-GyVRAei~~sGylI~P~~~~ 377 (766)
|+++|+++.|+|+++...| |..+++||||++++|++.++ .|+|..+||.||.+||.+ |||||++++|||+|+|+..+
T Consensus 83 l~~~~~d~~i~y~~~~~Pw-p~~~~~RDfV~l~~~~~~~~-~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~ 160 (205)
T cd08874 83 HKTFTEDICLVYLVHETPL-CLLKQPRDFCCLQVEAKEGE-LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVE 160 (205)
T ss_pred eeecCCCeEEEEEEecCCC-CCCCCCCeEEEEEEEEECCC-cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccC
Confidence 9999999999998887555 55679999999999987655 577999999999999996 99999999999999999432
Q ss_pred CCCCCCceEEEEEEeeecC-Cccc-cccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004240 378 MGSNGAKCLVTQMLEIHSS-GWCR-WKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (766)
Q Consensus 378 ~~~~~~~c~VT~I~qvD~K-Gwi~-w~p~~~s~~~~~i~~~mL~~Va~LRe~~~a 430 (766)
+.++|+|||++|+||+ |-+| |+. |.+ +......||.||.|+++
T Consensus 161 ---g~~~t~vty~~q~DPggg~iP~~l~---N~~----~~~~p~~~~~~~~~~~~ 205 (205)
T cd08874 161 ---GNQYTRVIYIAQVALCGPDVPAQLL---SSL----SKRQPLVIARLALFLEA 205 (205)
T ss_pred ---CCCcEEEEEEEEECCCCCCCCHHHH---hHH----HHhccHHHHHHHHHhhC
Confidence 2368999999999999 7883 442 332 23444578999988864
No 16
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.97 E-value=3.4e-29 Score=256.51 Aligned_cols=192 Identities=22% Similarity=0.334 Sum_probs=159.3
Q ss_pred cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEee-cCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCc
Q 004240 227 GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH 305 (766)
Q Consensus 227 ~~~~a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvV-daspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~ 305 (766)
..+....+|+++.+++||+||++..+ ++....+|+++++ +++++++|++|+|.+. |.+||+++.++++|+++|++
T Consensus 17 ~~~~~~~~W~~~~~~~gi~iy~r~~~--~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~--r~~Wd~~~~e~~~ie~~d~~ 92 (222)
T cd08871 17 KLCDSTDGWKLKYNKNNVKVWTKNPE--NSSIKMIKVSAIFPDVPAETLYDVLHDPEY--RKTWDSNMIESFDICQLNPN 92 (222)
T ss_pred HHhcCCCCcEEEEcCCCeEEEEeeCC--CCceEEEEEEEEeCCCCHHHHHHHHHChhh--hhhhhhhhceeEEEEEcCCC
Confidence 34445679999999999999999764 3556789999986 7899999999999876 99999999999999999999
Q ss_pred eEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCce
Q 004240 306 YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKC 385 (766)
Q Consensus 306 tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c 385 (766)
++|+|+.++.. +++++||||++|+|+..+ |.|+|+.+|+.||.+|+.+|||||.+..+||+|+|+++ ++|
T Consensus 93 ~~i~y~~~~~P---~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~------~~t 162 (222)
T cd08871 93 NDIGYYSAKCP---KPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP------KGC 162 (222)
T ss_pred CEEEEEEeECC---CCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC------CCE
Confidence 99999998854 459999999999999876 78999999999999999999999999999999999875 579
Q ss_pred EEEEEEeeecCCccc-cccCCcc-cchhhhHHHHHHHHHHHHHHhhcCC
Q 004240 386 LVTQMLEIHSSGWCR-WKKNSST-KFEKTTHFALLSQVAGLKEYIGANP 432 (766)
Q Consensus 386 ~VT~I~qvD~KGwi~-w~p~~~s-~~~~~i~~~mL~~Va~LRe~~~a~~ 432 (766)
.|||+.|+||+||+| |+.|+.. .....++..|-..+..++||.+.+.
T Consensus 163 ~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~ 211 (222)
T cd08871 163 TLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPEWKAKNN 211 (222)
T ss_pred EEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999993 5433221 1122333344466667777776643
No 17
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.96 E-value=2.9e-28 Score=244.54 Aligned_cols=178 Identities=25% Similarity=0.316 Sum_probs=150.6
Q ss_pred cccccCCCCEEEEE-eCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHH-HHHhcCCCcccccccCCCCceEEEEeecC
Q 004240 227 GDAIEAHEWKCVRT-LNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDG 304 (766)
Q Consensus 227 ~~~~a~sgWkl~~~-kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vf-e~L~d~~~~~R~~WD~~~~e~eVVE~lD~ 304 (766)
..+.+..+|++... ++|+.+|++.... ++.+..+|++++|+++++++| +++.|... |++||+++.++++||++++
T Consensus 13 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~--r~~Wd~~~~~~~~ie~~~~ 89 (206)
T smart00234 13 MAAASEPGWVLSSENENGDEVRSILSPG-RSPGEASRAVGVVPMVCADLVEELMDDLRY--RPEWDKNVAKAETLEVIDN 89 (206)
T ss_pred HhhCCCCccEEccccCCcceEEEEccCC-CCceEEEEEEEEEecChHHHHHHHHhcccc--hhhCchhcccEEEEEEECC
Confidence 34456779999997 8999999986532 246789999999999999755 67777766 9999999999999999999
Q ss_pred ceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCc
Q 004240 305 HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAK 384 (766)
Q Consensus 305 ~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~ 384 (766)
+++|+|++++..| +++++||||++|+|+..++|.|+|+.+|+.||.+|+.+|+|||++..+||+|+|+++ +.
T Consensus 90 ~~~i~~~~~~~~~--~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~------~~ 161 (206)
T smart00234 90 GTVIYHYVSKFVA--GPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN------GP 161 (206)
T ss_pred CCeEEEEEEeccc--CcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC------CC
Confidence 9999999888643 279999999999999988889999999999999999999999999999999999986 35
Q ss_pred eEEEEEEeeecCCccccccCC-cccchhhhHHHHH
Q 004240 385 CLVTQMLEIHSSGWCRWKKNS-STKFEKTTHFALL 418 (766)
Q Consensus 385 c~VT~I~qvD~KGwi~w~p~~-~s~~~~~i~~~mL 418 (766)
|+|||+.|+|++||+ |.| .+.+.......++
T Consensus 162 t~vt~~~~~D~~G~i---P~~lvn~~~~~~~~~~~ 193 (206)
T smart00234 162 SKVTWVSHADLKGWL---PHWLVRSLIKSGLAEFA 193 (206)
T ss_pred eEEEEEEEEecCCCc---cceeehhhhhhhHHHHH
Confidence 999999999999999 443 2455555555443
No 18
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.96 E-value=2.6e-28 Score=248.96 Aligned_cols=184 Identities=18% Similarity=0.274 Sum_probs=154.3
Q ss_pred cCCCCEEEE-EeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHh-cCCCcccccccCCCCceEEEEeecCceEE
Q 004240 231 EAHEWKCVR-TLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHYDV 308 (766)
Q Consensus 231 a~sgWkl~~-~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~-d~~~~~R~~WD~~~~e~eVVE~lD~~tDI 308 (766)
..++|++.+ .++|++||++..+. . ++++|++++|+++++++++.|+ +.+. +.+||.++.++++|+++|++++|
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~--~-~k~~k~e~~i~~~~~~l~~~l~~d~e~--~~~W~~~~~~~~vl~~id~~~~i 97 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD--I-GKVFRLEVVVDQPLDNLYSELVDRMEQ--MGEWNPNVKEVKILQRIGKDTLI 97 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC--C-CcEEEEEEEecCCHHHHHHHHHhchhh--hceecccchHHHHHhhcCCCceE
Confidence 467999995 58999999986542 2 2899999999999999995555 5555 99999999999999999999999
Q ss_pred EEEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEE
Q 004240 309 VYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVT 388 (766)
Q Consensus 309 vY~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT 388 (766)
+|+...| |..+++++||||++|+|++.+ +.++++..|+.||.+||++|||||+...+||+|+|+++ ++++|+||
T Consensus 98 ~y~~~~p-~p~~~vs~RD~V~~~~~~~~~-~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~----~~~~t~v~ 171 (209)
T cd08905 98 THEVAAE-TAGNVVGPRDFVSVRCAKRRG-STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAG----DPSKTKLT 171 (209)
T ss_pred EEEEecc-CCCCccCccceEEEEEEEEcC-CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCC----CCCceEEE
Confidence 9985444 312459999999999999875 46788899999999999999999999999999999975 34689999
Q ss_pred EEEeeecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004240 389 QMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (766)
Q Consensus 389 ~I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~a 430 (766)
|++++|||||+ |.| .+.+.+.-.++..+.+||+.+.+
T Consensus 172 ~~~~~DpkG~i---P~~--lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 172 WLLSIDLKGWL---PKS--IINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEeecCCCCC---CHH--HHHHHhHHhHHHHHHHHHHHHhc
Confidence 99999999999 442 22345556677899999998874
No 19
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.95 E-value=9e-28 Score=249.35 Aligned_cols=190 Identities=13% Similarity=0.194 Sum_probs=149.0
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeec-CCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEE
Q 004240 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (766)
Q Consensus 231 a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVd-aspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIv 309 (766)
.+.+|+++.+++||+||+++.+..+.....+|++++|+ +++++++++|+|.+. |.+||.++.++++||+++++++|+
T Consensus 24 ~~~~W~l~~~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~--r~~Wd~~~~~~~vie~l~~~~~I~ 101 (235)
T cd08872 24 GADGWQLFAEEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV--RMDWETTLENFHVVETLSQDTLIF 101 (235)
T ss_pred CCCCCEEEEeCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhh--HHHHHhhhheeEEEEecCCCCEEE
Confidence 35589999999999999997754322222699999999 899999999999987 999999999999999999999999
Q ss_pred EEEeccCcCCCCCCCCeEEEEEEEEEccC-------CeEEEEEeeccCCCCCCCCCeEeEEE---cceeEEE-EecCCCC
Q 004240 310 YGTYDPKYLTRWQSKRDFVFSRQWFRGQD-------GTYTILQFPAVHKKRPPKSGYRRTKI---NPSTWEI-RSLNLPM 378 (766)
Q Consensus 310 Y~~~kp~~lP~~vspRDFV~LRswRr~~d-------GsYVIa~~SV~Hp~~Pp~~GyVRAei---~~sGylI-~P~~~~~ 378 (766)
|+.++. |+++++||||++++|++.++ +.|+|++.|+.||.+|+++||||+.. +.++++| .|.+.-.
T Consensus 102 Y~~~k~---PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~ 178 (235)
T cd08872 102 HQTHKR---VWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQE 178 (235)
T ss_pred EEEccC---CCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCccc
Confidence 999985 45699999999999998654 67999999999999999999999996 4444444 4322100
Q ss_pred CC-CCCceEEEEEEeeecCCccc-cccCCcccchhhhHHHHHHHHHHHHHHhhcC
Q 004240 379 GS-NGAKCLVTQMLEIHSSGWCR-WKKNSSTKFEKTTHFALLSQVAGLKEYIGAN 431 (766)
Q Consensus 379 ~~-~~~~c~VT~I~qvD~KGwi~-w~p~~~s~~~~~i~~~mL~~Va~LRe~~~a~ 431 (766)
.+ +..+|+|||++++||+||+| |++ +.+.+..... .+..|-.|+..+
T Consensus 179 ~t~~~~~~~ity~~~~dPgG~iP~wvv---n~~~k~~~P~---~l~~~~~~~~~~ 227 (235)
T cd08872 179 ITRDNILCKITYVANVNPGGWAPASVL---RAVYKREYPK---FLKRFTSYVQEK 227 (235)
T ss_pred ccCCCCeEEEEEEEEeCCCCCccHHHH---HHHHHhhchH---HHHHHHHHHHHh
Confidence 00 12589999999999999993 554 3444444454 445555555443
No 20
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.95 E-value=9.7e-27 Score=232.89 Aligned_cols=187 Identities=27% Similarity=0.429 Sum_probs=152.7
Q ss_pred cccCCCCEEEEEeCCEEEEEEec-CCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceE
Q 004240 229 AIEAHEWKCVRTLNGVRIFEDVA-DSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 307 (766)
Q Consensus 229 ~~a~sgWkl~~~kngVrVy~~~~-~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tD 307 (766)
.....+|++...+++..++.... .........+|++++|+++++++|..|++.. . +||+.+.++++|++++++++
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~---~-~Wd~~~~~~~~le~~~~~~~ 90 (206)
T PF01852_consen 15 QEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDR---E-QWDKMCVEAEVLEQIDEDTD 90 (206)
T ss_dssp HHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGG---G-HHSTTEEEEEEEEEEETTEE
T ss_pred hcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhH---h-hcccchhhheeeeecCCCCe
Confidence 34578999999655555544433 2122377899999999999999999998752 3 99999999999999999999
Q ss_pred EEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCC-CCCeEeEEEcceeEEEEecCCCCCCCCCceE
Q 004240 308 VVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPP-KSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (766)
Q Consensus 308 IvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp-~~GyVRAei~~sGylI~P~~~~~~~~~~~c~ 386 (766)
|+|+.+++.| |+++++||||++|+|++..+|.|+|+.+||+||.+|+ .+|+|||++..+||+|+|+++ +.|+
T Consensus 91 i~~~~~~~~~-~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~------~~~~ 163 (206)
T PF01852_consen 91 IVYFVMKSPW-PGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD------GRTR 163 (206)
T ss_dssp EEEEEEE-CT-TTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT------CEEE
T ss_pred EEEEEecccC-CCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC------CCce
Confidence 9999999765 5579999999999999988899999999999999999 999999999999999999986 4699
Q ss_pred EEEEEeeecCCccccccCCc-ccchhhhHHHHHHHHHHHHHHhhcCC
Q 004240 387 VTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEYIGANP 432 (766)
Q Consensus 387 VT~I~qvD~KGwi~w~p~~~-s~~~~~i~~~mL~~Va~LRe~~~a~~ 432 (766)
|||+.|+||+||+ |.|+ +.+. ..++...+..+|+.++...
T Consensus 164 vt~~~~~D~~G~i---P~~~~n~~~---~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 164 VTYVSQVDPKGWI---PSWLVNMVV---KSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEEEESSSSS---HHHHHHHHH---HHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEECCCCCC---hHHHHHHHH---HHhHHHHHHHHHHHHHHhc
Confidence 9999999999999 4322 2322 3344567788888887653
No 21
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.95 E-value=2.4e-27 Score=241.17 Aligned_cols=175 Identities=17% Similarity=0.190 Sum_probs=151.9
Q ss_pred CCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEe
Q 004240 234 EWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTY 313 (766)
Q Consensus 234 gWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~ 313 (766)
||.-+...|++.++.+..+ .++..+.+|+++.++++|++|+.+|.+. |.+||.++.++++|+++|++++|+|+++
T Consensus 28 ~w~~~~~~~~~el~~~k~~-~gs~l~~~r~~~~i~a~~~~vl~~lld~----~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~ 102 (204)
T cd08908 28 GWVSYSTSEQAELSYKKVS-EGPPLRLWRTTIEVPAAPEEILKRLLKE----QHLWDVDLLDSKVIEILDSQTEIYQYVQ 102 (204)
T ss_pred CCcccCCCCcEEEEEeccC-CCCCcEEEEEEEEeCCCHHHHHHHHHhh----HHHHHHHhhheEeeEecCCCceEEEEEc
Confidence 5555555566666544332 4566789999999999999999999774 8999999999999999999999999999
Q ss_pred ccCcCCCCCCCCeEEEEEEEEE-ccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEe
Q 004240 314 DPKYLTRWQSKRDFVFSRQWFR-GQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLE 392 (766)
Q Consensus 314 kp~~lP~~vspRDFV~LRswRr-~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~q 392 (766)
++.| ++++||||++|+|+. .++|.|+|.+.|+.|+.+|+. +|||....+||+|+|+++ ++|+|||+++
T Consensus 103 ~~Pw---P~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~------g~t~vtyi~~ 171 (204)
T cd08908 103 NSMA---PHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGS------GKSKLTYMCR 171 (204)
T ss_pred cCCC---CCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCC------CcEEEEEEEE
Confidence 8654 599999999999986 578899999999999999976 699999999999999975 6899999999
Q ss_pred eecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004240 393 IHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (766)
Q Consensus 393 vD~KGwi~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~a 430 (766)
+||+|++ |.|+.+..+|++++ .+.+||+.|..
T Consensus 172 ~DPgG~i---P~W~~N~~g~~~~~---~~~~~r~sf~~ 203 (204)
T cd08908 172 IDLRGHM---PEWYTKSFGHLCAA---EVVKIRDSFSN 203 (204)
T ss_pred eCCCCCC---cHHHHhhHHHHHHH---HHHHHHhhccC
Confidence 9999999 88888889999996 78999999853
No 22
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.95 E-value=1.1e-26 Score=236.49 Aligned_cols=180 Identities=17% Similarity=0.166 Sum_probs=151.2
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEee-cCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecC-ceEE
Q 004240 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDG-HYDV 308 (766)
Q Consensus 231 a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvV-daspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~-~tDI 308 (766)
+.++|+++.+++||+||++..+ ++....+|+++++ ++|+++++++|+|.+. |.+||.++.++++|++.++ +++|
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~--~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~--r~~Wd~~~~~~~~le~~~~~~~~i 94 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHP--GTGLYEYKVYGSFDDVTARDFLNVQLDLEY--RKKWDATAVELEVVDEDPETGSEI 94 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccC--CCCcEEEEEEEEEcCCCHHHHHHHHhCHHH--HHHHHhhheeEEEEEccCCCCCEE
Confidence 5678999999999999999775 3455789999876 8999999999999987 9999999999999999755 8999
Q ss_pred EEEEeccCcCCCCCCCCeEEEEEEEEEc-cCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEE
Q 004240 309 VYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLV 387 (766)
Q Consensus 309 vY~~~kp~~lP~~vspRDFV~LRswRr~-~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~V 387 (766)
+|+.++. |+++++||||+.|.|+.+ ++|.|+|+++||.||.+|+++||||+....+||+|+|.++. +.++|.+
T Consensus 95 ~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~---~~~~~~~ 168 (207)
T cd08911 95 IYWEMQW---PKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSF---DEPGFEF 168 (207)
T ss_pred EEEEEEC---CCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCC---CCCCeEE
Confidence 9999884 567999999999998876 45688999999999999999999999999999999998631 2357999
Q ss_pred EEEEeeecCCccc-cccCCcccchhhhHHHHHHHHHHHHH
Q 004240 388 TQMLEIHSSGWCR-WKKNSSTKFEKTTHFALLSQVAGLKE 426 (766)
Q Consensus 388 T~I~qvD~KGwi~-w~p~~~s~~~~~i~~~mL~~Va~LRe 426 (766)
++..+.||+||+| |++ +.+.+..+.. .+.+|++
T Consensus 169 ~~~~~~dPgG~IP~~lv---N~~~~~~~~~---~l~~l~~ 202 (207)
T cd08911 169 VLTYFDNPGVNIPSYIT---SWVAMSGMPD---FLERLRN 202 (207)
T ss_pred EEEEEeCCCCccCHHHH---HHHHHhhccH---HHHHHHH
Confidence 9999999999992 442 4455555554 4444544
No 23
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.94 E-value=6.1e-25 Score=215.02 Aligned_cols=154 Identities=34% Similarity=0.592 Sum_probs=142.5
Q ss_pred CCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEE
Q 004240 233 HEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGT 312 (766)
Q Consensus 233 sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~ 312 (766)
.+|++..+++|++||.+..+. .....+|+++.|++|+++|+++|.+.+. |.+||+.+.++++|+++++++.|+|+.
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~--~~~~~~k~~~~i~~~~~~v~~~l~d~~~--~~~w~~~~~~~~vl~~~~~~~~i~~~~ 90 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED--SGLKLLKAEGVIPASPEQVFELLMDIDL--RKKWDKNFEEFEVIEEIDEHTDIIYYK 90 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC--CCceeEEEEEEECCCHHHHHHHHhCCch--hhchhhcceEEEEEEEeCCCeEEEEEE
Confidence 489999999999999997653 3568999999999999999999999766 999999999999999999999999999
Q ss_pred eccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEe
Q 004240 313 YDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLE 392 (766)
Q Consensus 313 ~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~q 392 (766)
++..| ++++||||+++++...++|.++++..|+.|+.+|+.+++|||.+..+||+|+|+++ ++|++||+++
T Consensus 91 ~~~p~---p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~------~~~~vt~~~~ 161 (193)
T cd00177 91 TKPPW---PVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP------GKTKVTYVLQ 161 (193)
T ss_pred eeCCC---ccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC------CCEEEEEEEe
Confidence 98654 49999999999999888789999999999999999999999999999999999954 6899999999
Q ss_pred eecCCcc
Q 004240 393 IHSSGWC 399 (766)
Q Consensus 393 vD~KGwi 399 (766)
+|++||+
T Consensus 162 ~D~~g~i 168 (193)
T cd00177 162 VDPKGSI 168 (193)
T ss_pred eCCCCCc
Confidence 9999999
No 24
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.93 E-value=2.5e-25 Score=226.80 Aligned_cols=176 Identities=20% Similarity=0.249 Sum_probs=146.5
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeec-CCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEE
Q 004240 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (766)
Q Consensus 231 a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVd-aspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIv 309 (766)
+.++|+++.+++||+||++..+ ++....+|++++++ +++++++++|+|.+. |.+||.++.+ +++..+++++|+
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~--~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~--r~~Wd~~~~~--~~~~~~~~~~i~ 96 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDE--QSGLYEYKVFGVLEDCSPSLLADVYMDLEY--RKQWDQYVKE--LYEKECDGETVI 96 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccC--CCCcEEEEEEEEEcCCCHHHHHHHHhCHHH--HHHHHHHHHh--heeecCCCCEEE
Confidence 4678999999999999999664 45557899999998 699999999999987 9999999986 788889899999
Q ss_pred EEEeccCcCCCCCCCCeEEEEEEEEEc-cCC--eEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceE
Q 004240 310 YGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG--TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (766)
Q Consensus 310 Y~~~kp~~lP~~vspRDFV~LRswRr~-~dG--sYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~ 386 (766)
|+.++. |+++++||||++|+++.. .+| .++|+++|+.||.+|+++|+||+....++|+|+|.++ ++|+
T Consensus 97 y~~~k~---PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~------~~t~ 167 (207)
T cd08910 97 YWEVKY---PFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK------KGSK 167 (207)
T ss_pred EEEEEc---CCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC------CceE
Confidence 999985 556999999999988753 233 4788999999999999999999999999999999864 5799
Q ss_pred EEEEEeeecCCccc-cccCCcccchhhhHHHHHHHHHHHHHH
Q 004240 387 VTQMLEIHSSGWCR-WKKNSSTKFEKTTHFALLSQVAGLKEY 427 (766)
Q Consensus 387 VT~I~qvD~KGwi~-w~p~~~s~~~~~i~~~mL~~Va~LRe~ 427 (766)
++|+.+.||+|++| |+. +.+.+..+. ..+.+||+-
T Consensus 168 i~~~~~~DPgG~IP~wlv---N~~~~~~~~---~~l~~l~ka 203 (207)
T cd08910 168 VFMYYFDNPGGMIPSWLI---NWAAKNGVP---NFLKDMQKA 203 (207)
T ss_pred EEEEEEeCCCCcchHHHH---HHHHHHhhH---HHHHHHHHH
Confidence 99999999999992 442 344444444 355556554
No 25
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.93 E-value=1.9e-24 Score=215.66 Aligned_cols=177 Identities=21% Similarity=0.295 Sum_probs=150.3
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEE
Q 004240 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (766)
Q Consensus 231 a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY 310 (766)
.+.+|+++.+++|++||+++.+. +....+|++++|+++|++||+++.|.+. |++||+.+.++++||+++++.+++|
T Consensus 15 ~~~~W~~~~~~~~v~v~~~~~~~--~~~~~~k~~~~i~~s~e~v~~vi~d~e~--~~~w~~~~~~~~vie~~~~~~~i~~ 90 (195)
T cd08876 15 PDGDWQLVKDKDGIKVYTRDVEG--SPLKEFKAVAEVDASIEAFLALLRDTES--YPQWMPNCKESRVLKRTDDNERSVY 90 (195)
T ss_pred CCCCCEEEecCCCeEEEEEECCC--CCeEEEEEEEEEeCCHHHHHHHHhhhHh--HHHHHhhcceEEEeecCCCCcEEEE
Confidence 45569999999999999997642 3347999999999999999999999987 9999999999999999999899999
Q ss_pred EEeccCcCCCCCCCCeEEEEEEEEEcc-CCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEE
Q 004240 311 GTYDPKYLTRWQSKRDFVFSRQWFRGQ-DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 389 (766)
Q Consensus 311 ~~~kp~~lP~~vspRDFV~LRswRr~~-dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~ 389 (766)
..++.. +++++||||+.+.++... +|.++|...|+.|+ +|+.++|||+....+||.|+|+++ ++|+|||
T Consensus 91 ~~~~~p---~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~------~~t~vt~ 160 (195)
T cd08876 91 TVIDLP---WPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGN------GKTRVTY 160 (195)
T ss_pred EEEecc---cccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCC------CeEEEEE
Confidence 998854 459999999998887754 78899999999998 899999999999999999999975 5899999
Q ss_pred EEeeecCCccccccCCc-ccchhhhHHHHHHHHHHHHHH
Q 004240 390 MLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEY 427 (766)
Q Consensus 390 I~qvD~KGwi~w~p~~~-s~~~~~i~~~mL~~Va~LRe~ 427 (766)
++++|++||+ |.+. +.+....+. ..+++||+.
T Consensus 161 ~~~~dp~g~i---P~~lv~~~~~~~~~---~~l~~l~~~ 193 (195)
T cd08876 161 QAYADPGGSI---PGWLANAFAKDAPY---NTLENLRKQ 193 (195)
T ss_pred EEEeCCCCCC---CHHHHHHHHHHHHH---HHHHHHHHh
Confidence 9999999999 5432 333343333 456677654
No 26
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.92 E-value=7.9e-24 Score=215.58 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=150.2
Q ss_pred CCCEEEEEeCC----EEEEEEecCCCCCcceEEEEEEee-cCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecC-ce
Q 004240 233 HEWKCVRTLNG----VRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDG-HY 306 (766)
Q Consensus 233 sgWkl~~~kng----VrVy~~~~~~~~~~~~~~Ka~gvV-daspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~-~t 306 (766)
.+|+++..++| |+||++..+ +.....+|+++++ ++|+++++++|+|.+. |.+||.++.++++|+..++ ++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~--~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~--r~~Wd~~~~~~~~le~~~~~~~ 97 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPK--GTGLYEYLVRGVFEDCTPELLRDFYWDDEY--RKKWDETVIEHETLEEDEKSGT 97 (209)
T ss_pred CcceEhhhccCCCceEEEEecccC--CCCceEEEEEEEEcCCCHHHHHHHHcChhh--HhhhhhheeeEEEEEecCCCCc
Confidence 68999999999 999999764 3445789999999 5699999999999987 9999999999999999655 58
Q ss_pred EEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceE
Q 004240 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (766)
Q Consensus 307 DIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~ 386 (766)
+|+|+.++. |+++++||||+.|.++...+|.++|+.+|+.||.+|+. |+||+....++|+|+|++. ++++|.
T Consensus 98 ~i~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~----~~~~t~ 169 (209)
T cd08870 98 EIVRWVKKF---PFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKG----DGQGSA 169 (209)
T ss_pred EEEEEEEEC---CCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecC----CCCceE
Confidence 999999984 56799999999999888778899999999999999999 9999999999999999952 236899
Q ss_pred EEEEEeeecCCccccccCCc-ccchhhhHHHHHHHHHHHHHHh
Q 004240 387 VTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEYI 428 (766)
Q Consensus 387 VT~I~qvD~KGwi~w~p~~~-s~~~~~i~~~mL~~Va~LRe~~ 428 (766)
+++..+.||+|++ |.|. +.+.+..+. ..+.+||+-+
T Consensus 170 ~~~~~~~dp~G~I---P~wlvN~~~~~~~~---~~l~~l~~a~ 206 (209)
T cd08870 170 CEVTYFHNPDGGI---PRELAKLAVKRGMP---GFLKKLENAL 206 (209)
T ss_pred EEEEEEECCCCCC---CHHHHHHHHHhhhH---HHHHHHHHHH
Confidence 9999999999999 4432 333333333 4666776654
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.88 E-value=6.7e-22 Score=201.86 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=150.7
Q ss_pred cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCce
Q 004240 227 GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY 306 (766)
Q Consensus 227 ~~~~a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~t 306 (766)
+++-+.++|++..+++|++||.+... ++....+|++++|+++++.++.+|.+.+. +++|++.+.++++|++++.++
T Consensus 16 ~~l~~~~~W~~~~~~~~i~v~~r~~~--~~~~~~~k~e~~i~~~~~~~~~vl~d~~~--~~~W~p~~~~~~~l~~~~~~~ 91 (215)
T cd08877 16 KDLDESDGWTLQKESEGIRVYYKFEP--DGSLLSLRMEGEIDGPLFNLLALLNEVEL--YKTWVPFCIRSKKVKQLGRAD 91 (215)
T ss_pred hcccCCCCcEEeccCCCeEEEEEeCC--CCCEEEEEEEEEecCChhHeEEEEehhhh--HhhhcccceeeEEEeecCCce
Confidence 45556889999999999999998664 23468999999999999999999999976 999999999999999999999
Q ss_pred EEEEEEeccCcCCCCCCCCeEEEEEEEE-Ec-cCCeEEEEEeeccCCC---------CCCCC-CeEeEEEcceeEEEEec
Q 004240 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWF-RG-QDGTYTILQFPAVHKK---------RPPKS-GYRRTKINPSTWEIRSL 374 (766)
Q Consensus 307 DIvY~~~kp~~lP~~vspRDFV~LRswR-r~-~dGsYVIa~~SV~Hp~---------~Pp~~-GyVRAei~~sGylI~P~ 374 (766)
.|+|+.++. |+++++||+|+..... .. ++|.++|+..|+.|+. +|+.+ |+||++...+||+|+|+
T Consensus 92 ~v~y~~~~~---PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~ 168 (215)
T cd08877 92 KVCYLRVDL---PWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI 168 (215)
T ss_pred EEEEEEEeC---ceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc
Confidence 999998884 5569999999863322 23 7899999999999876 69999 99999999999999999
Q ss_pred CCCCCCCCCceEEEEEEeeecCCc-cccccCC-cccchhhhHHHHHHHH
Q 004240 375 NLPMGSNGAKCLVTQMLEIHSSGW-CRWKKNS-STKFEKTTHFALLSQV 421 (766)
Q Consensus 375 ~~~~~~~~~~c~VT~I~qvD~KGw-i~w~p~~-~s~~~~~i~~~mL~~V 421 (766)
++ ++|.++++.++||+|+ + |.| .+.+.+.++..++..+
T Consensus 169 ~~------~~t~v~~~~~~DP~g~~I---P~~liN~~~k~~~~~~~~~l 208 (215)
T cd08877 169 SP------TKCYLRFVANVDPKMSLV---PKSLLNFVARKFAGLLFEKI 208 (215)
T ss_pred CC------CCeEEEEEEEcCCCcccC---CHHHHHHHHHHHHHHHHHHH
Confidence 86 6899999999999999 8 443 3555566666554433
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.84 E-value=2.9e-20 Score=188.74 Aligned_cols=167 Identities=22% Similarity=0.328 Sum_probs=144.2
Q ss_pred cccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEee-cCCHHHHHHHHhcCCCcccccccCCCCceEEEEeec-Cce
Q 004240 229 AIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYD-GHY 306 (766)
Q Consensus 229 ~~a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvV-daspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD-~~t 306 (766)
+-+..+|+++.+++++.||....+. .....+|+.++. |+||+.++++++|.++ |++||.++.+.++|+... -++
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~--~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eY--RkkWD~~vi~~e~ie~d~~tg~ 100 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPK--TGLYEYKSRTVFEDVTPEIVRDVQWDDEY--RKKWDDMVIELETIEEDPVTGT 100 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccC--CCCEEEEEEEEEcCCCHHHHHHHHhhhHH--HHHHHHHhhhheeeeecCCCCc
Confidence 5567899999999999999953321 226788999976 5899999999999998 999999999999999986 577
Q ss_pred EEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEE-ecCCCCCCCCCce
Q 004240 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIR-SLNLPMGSNGAKC 385 (766)
Q Consensus 307 DIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~-P~~~~~~~~~~~c 385 (766)
+|+|+..+ +|.++++||||++|.|...++-.|+|+++||.||++||++++||+.+.-+||+|+ +... .+++.|
T Consensus 101 ~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~---~~~~~~ 174 (219)
T KOG2761|consen 101 EVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRS---GDEQGC 174 (219)
T ss_pred eEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEccccc---CCCCcc
Confidence 99999998 5778999999999999887656799999999999999999999999999999999 5543 256789
Q ss_pred EEEEEEeeecCCccc-cccCC
Q 004240 386 LVTQMLEIHSSGWCR-WKKNS 405 (766)
Q Consensus 386 ~VT~I~qvD~KGwi~-w~p~~ 405 (766)
.+.++...|++|-++ |+++|
T Consensus 175 ~~~~~~~~~p~~~iP~~~v~~ 195 (219)
T KOG2761|consen 175 ACEYLYFHNPGGGIPKWVVKL 195 (219)
T ss_pred EEEEEEEECCCCCCcHHHHHH
Confidence 999999999999994 45444
No 29
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.60 E-value=1.1e-15 Score=167.86 Aligned_cols=166 Identities=16% Similarity=0.315 Sum_probs=143.0
Q ss_pred cccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeec-CCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceE
Q 004240 229 AIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 307 (766)
Q Consensus 229 ~~a~sgWkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVd-aspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tD 307 (766)
......|+++...+.+++|+++.+..+-..-.+|+...|. +++.++++++++.+. |.+|+.+++.+.|||+|.+++-
T Consensus 399 ~g~d~nwqlFaeegemkmy~re~eeng~~~Dplka~hav~gvta~e~chyf~~~~~--rndwettle~~~vve~is~d~~ 476 (611)
T KOG1739|consen 399 VGGDANWQLFAEEGEMKMYRREVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVDV--RNDWETTLENFHVVETISDDAI 476 (611)
T ss_pred ccccchhhhhcccCCccccceeeccCCcccCccccchhhcchhHHHHHHHHcChhh--hcchhhhhhhceeeeeecCCeE
Confidence 3445679999999999999998876666666788887665 599999999999988 9999999999999999999999
Q ss_pred EEEEEeccCcCCCCCCCCeEEEEEEEEEc----cC--CeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCC-
Q 004240 308 VVYGTYDPKYLTRWQSKRDFVFSRQWFRG----QD--GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGS- 380 (766)
Q Consensus 308 IvY~~~kp~~lP~~vspRDFV~LRswRr~----~d--GsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~- 380 (766)
|+|++.|..| +.++||-.++.+.|+- ++ +.|+||++||+|.+.|-...+||+.+..+.-+-.-++++.++
T Consensus 477 ~~~qthkrvw---pasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~~p~~~q 553 (611)
T KOG1739|consen 477 IIYQTHKRVW---PASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVSPPEGNQ 553 (611)
T ss_pred EEEecccccC---CCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccCCcccCC
Confidence 9999999887 4999999999999973 22 489999999999999999999999998887776666654332
Q ss_pred ----CCCceEEEEEEeeecCCcc
Q 004240 381 ----NGAKCLVTQMLEIHSSGWC 399 (766)
Q Consensus 381 ----~~~~c~VT~I~qvD~KGwi 399 (766)
+.-.|++||+.+++|+||.
T Consensus 554 ~l~rdd~~ckityvs~vnpggwa 576 (611)
T KOG1739|consen 554 ELSRDDILCKITYVSNVNPGGWA 576 (611)
T ss_pred cccccceeEEEEEEeeeCCCCcc
Confidence 2348999999999999999
No 30
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.55 E-value=1.3e-13 Score=142.78 Aligned_cols=135 Identities=15% Similarity=0.211 Sum_probs=115.7
Q ss_pred CCcceEEEEEEeecCCHHHHHHHHhcCCCccccc-ccCCCCceEEEEeecCc--------eEEEEEEeccCcCCCCCCCC
Q 004240 255 SGRGVLVKAVGVIDASADTVFEVVLNLERHQRYE-WDMLTGDLELVDSYDGH--------YDVVYGTYDPKYLTRWQSKR 325 (766)
Q Consensus 255 ~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~-WD~~~~e~eVVE~lD~~--------tDIvY~~~kp~~lP~~vspR 325 (766)
++.+-+-|++++|...|..+.+.|+|... ..+ .++.+...++++.|+.. ..++|..++... .++++|
T Consensus 56 ~~~~eASR~~glV~m~~~~lVe~lmD~~k--W~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pS--pLVp~R 131 (229)
T cd08875 56 GFTTEASRACGLVMMNAIKLVEILMDVNK--WSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPS--PLVPTR 131 (229)
T ss_pred CCeEEEEeeeEEEecCHHHHHHHHhChhh--hhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCc--ccccCC
Confidence 34455779999999999999999999643 222 44588899999999544 678998887532 489999
Q ss_pred eEEEEEEEEEccCCeEEEEEeeccCC-CCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004240 326 DFVFSRQWFRGQDGTYTILQFPAVHK-KRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (766)
Q Consensus 326 DFV~LRswRr~~dGsYVIa~~SV~Hp-~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi 399 (766)
||++|||....+||+|+|+.+|+++. ..|+.++++|++.++|||+|+|+++ +.|+||||-|+|..-|.
T Consensus 132 e~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~n------G~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 132 EFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPN------GYSKVTWVEHVEVDEKP 200 (229)
T ss_pred eEEEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCC------CceEEEEEEEEeccCCc
Confidence 99999999999999999999999998 6888889999999999999999996 57999999999998874
No 31
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.09 E-value=3e-09 Score=109.39 Aligned_cols=131 Identities=19% Similarity=0.122 Sum_probs=95.2
Q ss_pred cccccCCCC--ceEEEEeecCce----EEEEEEeccCcCCCCCCCCeEEEEEE-EEEcc-CCeEEEEEeeccCCCCC-CC
Q 004240 286 RYEWDMLTG--DLELVDSYDGHY----DVVYGTYDPKYLTRWQSKRDFVFSRQ-WFRGQ-DGTYTILQFPAVHKKRP-PK 356 (766)
Q Consensus 286 R~~WD~~~~--e~eVVE~lD~~t----DIvY~~~kp~~lP~~vspRDFV~LRs-wRr~~-dGsYVIa~~SV~Hp~~P-p~ 356 (766)
-.+|-..+. ++++|+..++.. .|+|+.++ +|+++++|||+.+.. ....+ ...++++..++.|+.+| +.
T Consensus 65 E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~ 141 (208)
T cd08864 65 EKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLY 141 (208)
T ss_pred hhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccC
Confidence 447999999 899999998665 88888888 567799999999988 33333 14689999999999999 89
Q ss_pred CCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEE--eeecCCcc-ccccCCcccchhhhHHHHHHHHHHHHHHhh
Q 004240 357 SGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML--EIHSSGWC-RWKKNSSTKFEKTTHFALLSQVAGLKEYIG 429 (766)
Q Consensus 357 ~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~--qvD~KGwi-~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~ 429 (766)
++||||. ..+|..|+.++.. ....+.|+|++ +.|++|++ +|+.+ ..+..++..-|..+-+|+.
T Consensus 142 ~~~Vr~~-y~SgE~~~~~p~~---~~~~~~vew~maT~sDpGG~IP~wl~n------~~~p~aI~~Dv~~fl~W~~ 207 (208)
T cd08864 142 ENAVLGR-YASVEKISYLPDA---DGKSNKVEWIMATRSDAGGNIPRWLTK------LTIPKAIAKDVPLFLDWID 207 (208)
T ss_pred CCcEEEE-EEEEEEEEEcCcc---CCCcCCEEEEEEEeeCCCCcCcHHHHh------ccCchHHHHhHHHHHHHhc
Confidence 9999999 7888777766531 01345566666 99999999 35433 1333333345555555543
No 32
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.98 E-value=3.1e-09 Score=92.95 Aligned_cols=91 Identities=14% Similarity=0.294 Sum_probs=69.7
Q ss_pred eeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecCC
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD 127 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~~ 127 (766)
|||||++.+.. + .. -++|||||++..|.|||.+.... ..|..+..|+++...++... =++|+|.++
T Consensus 1 ~~G~L~k~~~~-~-~~-W~~r~~vl~~~~L~~~~~~~~~~--~~~~~~i~l~~~~~~~~~~~-------~~~F~i~~~-- 66 (91)
T cd01246 1 VEGWLLKWTNY-L-KG-WQKRWFVLDNGLLSYYKNKSSMR--GKPRGTILLSGAVISEDDSD-------DKCFTIDTG-- 66 (91)
T ss_pred CeEEEEEeccc-C-CC-ceeeEEEEECCEEEEEecCccCC--CCceEEEEeceEEEEECCCC-------CcEEEEEcC--
Confidence 79999998653 2 44 49999999999999999876543 46777777877654444322 367777754
Q ss_pred cCcceeeeccCHHHHHHHHHHHHHH
Q 004240 128 ESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 128 ~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
+++.+.|.|.|.+|+..|++||+.|
T Consensus 67 ~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 67 GDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC
Confidence 2378999999999999999999875
No 33
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.92 E-value=1.6e-08 Score=86.48 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=79.6
Q ss_pred eeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecC
Q 004240 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (766)
Q Consensus 47 ~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~ 126 (766)
.++|||++...+ +.+-.++||++|.++.+.+|+.++... ...|.....|++. .|.+......++ .-+.|.|.++.
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~-~v~~~~~~~~~~-~~~~f~l~~~~ 76 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKK-DYKPKGSIDLSGI-TVREAPDPDSAK-KPHCFEIKTAD 76 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccc-cCCCceEEECCcC-EEEeCCCCccCC-CceEEEEEecC
Confidence 489999998776 566679999999999999999988754 3678888888887 666555443222 23677777655
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHH
Q 004240 127 DESKKGEIACATAGEARKWMEAFDQAK 153 (766)
Q Consensus 127 ~~~~~~~~aa~~~eea~~W~~~~~~~~ 153 (766)
. ..+.|.|.|.+|+..|+++|+.++
T Consensus 77 ~--~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 77 R--RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred C--ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 4 789999999999999999999885
No 34
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.89 E-value=1.2e-08 Score=89.27 Aligned_cols=100 Identities=17% Similarity=0.281 Sum_probs=77.8
Q ss_pred eeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeecccee--eeCceEEEEEEee
Q 004240 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRR--FNHGDVYVMRLYN 124 (766)
Q Consensus 47 ~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~--~~~~~~yv~~~yn 124 (766)
.++|||++.+ .....+ ++|||||.+..|.|||.+.... ...|.....++.+ .|.+..... .....-+.|.|.+
T Consensus 2 ~~~G~L~~~~--~~~~~w-k~r~~vL~~~~L~~~~~~~~~~-~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~ 76 (104)
T PF00169_consen 2 IKEGWLLKKS--SSRKKW-KKRYFVLRDSYLLYYKSSKDKS-DSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITT 76 (104)
T ss_dssp EEEEEEEEEE--SSSSSE-EEEEEEEETTEEEEESSTTTTT-ESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEE
T ss_pred EEEEEEEEEC--CCCCCe-EEEEEEEECCEEEEEecCcccc-ceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEe
Confidence 5899999988 444555 9999999999999999877422 3677778888777 777655542 2233445667777
Q ss_pred cCCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004240 125 RLDESKKGEIACATAGEARKWMEAFDQAK 153 (766)
Q Consensus 125 ~~~~~~~~~~aa~~~eea~~W~~~~~~~~ 153 (766)
+.. ..+.|.|.|.+|...|+.+|++|+
T Consensus 77 ~~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 77 PNG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TTS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 665 789999999999999999999985
No 35
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.84 E-value=1.5e-08 Score=93.09 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=68.0
Q ss_pred eeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEEEEEEeecC
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~-~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~ 126 (766)
.||||..-|...+ ..| ++|||||.++.|.|||.+....| +++||.+. ...+.|.+.-.....+...|.|.|..+
T Consensus 1 KeG~L~K~g~~~~-k~w-kkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~--~~~~~v~~~~~~~~~~~~~~~F~i~t~- 75 (103)
T cd01251 1 KEGFMEKTGPKHT-EGF-KKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQ--EDGYEVREGLPPGTQGNHWYGVTLVTP- 75 (103)
T ss_pred CceeEEecCCCCC-CCc-eeEEEEEeCCEEEEECCCCCcCcCcEEEeecc--ccceeEeccCCccccccccceEEEEeC-
Confidence 4899999776432 334 99999999999999997543322 23333331 122345331111112333468888775
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004240 127 DESKKGEIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 127 ~~~~~~~~aa~~~eea~~W~~~~~~~~~ 154 (766)
++...|.|.|.+|+..||+||+.|+.
T Consensus 76 --~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 --ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999976
No 36
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.75 E-value=5.4e-08 Score=87.35 Aligned_cols=94 Identities=15% Similarity=0.327 Sum_probs=66.3
Q ss_pred eeeeEEEEEccc-c-cccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEee
Q 004240 47 EYFGWVYHMGTN-S-IGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (766)
Q Consensus 47 ~~egw~~~~~~~-~-~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn 124 (766)
.++|||++-+.. + ....+ ++|||||.++.|.|||.+.... |.....+.++ .|+.. .+ .+.-|+|.|-+
T Consensus 1 ~~~GwL~kk~~~~g~~~k~W-kkrwfvL~~~~L~yyk~~~~~~----~~~~I~L~~~-~v~~~-~~---~~k~~~F~I~~ 70 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKW-ARRWFVLKGTTLYWYRSKQDEK----AEGLIFLSGF-TIESA-KE---VKKKYAFKVCH 70 (96)
T ss_pred CceeEEEEecCCCCccccCc-eeEEEEEECCEEEEECCCCCCc----cceEEEccCC-EEEEc-hh---cCCceEEEECC
Confidence 379999996532 2 33466 9999999999999999765443 4445555554 44421 11 11347788864
Q ss_pred cCCcCcceeeeccCHHHHHHHHHHHHHH
Q 004240 125 RLDESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 125 ~~~~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
+ ..+.+-|+|.|.||+..||++|.+|
T Consensus 71 ~--~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 P--VYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred C--CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3 2377899999999999999999876
No 37
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.64 E-value=2.3e-07 Score=85.41 Aligned_cols=92 Identities=17% Similarity=0.318 Sum_probs=72.3
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEecc------eeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEE
Q 004240 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGK------YVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVY 118 (766)
Q Consensus 46 ~~~egw~~~~~~~~~g~~~~~~ry~vl~~~------~~~~yk~~p~~~~-~~~pir~~~i~~~~rv~d~g~~~~~~~~~y 118 (766)
+.++|||... .++ |+|||||++. .|.|||.+..-.- ...|.+...++.|.-|..+-. .-|+ |
T Consensus 2 v~k~GyL~K~------K~~-kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~~---~ 70 (101)
T cd01257 2 VRKSGYLRKQ------KSM-HKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKHR---H 70 (101)
T ss_pred ccEEEEEeEe------cCc-EeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-cccC---e
Confidence 5689999985 334 8899999998 8999998775331 257999999999998875322 2222 7
Q ss_pred EEEEeecCCcCcceeeeccCHHHHHHHHHHHHH
Q 004240 119 VMRLYNRLDESKKGEIACATAGEARKWMEAFDQ 151 (766)
Q Consensus 119 v~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~ 151 (766)
+|.|+. ++...-|+|.|-+|...|+++|.+
T Consensus 71 ~f~i~t---~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYT---RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence 888877 447999999999999999999965
No 38
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.56 E-value=3.9e-07 Score=81.97 Aligned_cols=95 Identities=14% Similarity=0.211 Sum_probs=65.3
Q ss_pred eeeEEEEEcccccccccceeeeEEEec--ceeeeeccCCCCCCCCCcceeeeecCceeEeec----cceeeeCceEEEEE
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIRG--KYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL----GRRRFNHGDVYVMR 121 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~~--~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~----g~~~~~~~~~yv~~ 121 (766)
++|||..-|. .-..| ++|||||.+ ..|.|||.... ..|..+.-+..++.|+.. |... |...-+.|.
T Consensus 1 ~~G~L~K~g~--~~k~W-kkRwFvL~~~~~~L~Yy~~~~~----~~~~g~I~L~~~~~v~~~~~~~~~~~-~~~~~~~f~ 72 (101)
T cd01235 1 CEGYLYKRGA--LLKGW-KPRWFVLDPDKHQLRYYDDFED----TAEKGCIDLAEVKSVNLAQPGMGAPK-HTSRKGFFD 72 (101)
T ss_pred CeEEEEEcCC--CCCCc-cceEEEEECCCCEEEEecCCCC----CccceEEEcceeEEEeecCCCCCCCC-CCCCceEEE
Confidence 5899999774 44666 999999995 49999996643 344444555555666542 1221 112234566
Q ss_pred EeecCCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004240 122 LYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (766)
Q Consensus 122 ~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~ 153 (766)
|. .+.+..-|.|.|.||+..|+++|+++|
T Consensus 73 i~---t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 73 LK---TSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EE---eCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 53 245778999999999999999999875
No 39
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.54 E-value=4.1e-07 Score=83.99 Aligned_cols=99 Identities=10% Similarity=0.084 Sum_probs=67.9
Q ss_pred eeeEEEEEc--ccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceee---eCceEEEEEE
Q 004240 48 YFGWVYHMG--TNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRF---NHGDVYVMRL 122 (766)
Q Consensus 48 ~egw~~~~~--~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~---~~~~~yv~~~ 122 (766)
-||||+.-+ +.++|+.-.++|||||++..|.|||.++... ..|.-+..+....-|++-.-+.. +.+.-|.|.|
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~--~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i 79 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKR--GSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQV 79 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccc--cCcceeEECCcceEEEEecCCcCcccccccCccEEE
Confidence 489999996 4457775669999999999999999877531 22323333334445554333321 1123477888
Q ss_pred eecCCcCcceeeeccCHHHHHHHHHHHHH
Q 004240 123 YNRLDESKKGEIACATAGEARKWMEAFDQ 151 (766)
Q Consensus 123 yn~~~~~~~~~~aa~~~eea~~W~~~~~~ 151 (766)
.-. ++..-|.|.|.+|...|+++|++
T Consensus 80 ~t~---~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 80 VHD---EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EeC---CCeEEEEcCCHHHHHHHHHHHHh
Confidence 653 45778889999999999999976
No 40
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.54 E-value=7.9e-07 Score=84.03 Aligned_cols=95 Identities=13% Similarity=0.331 Sum_probs=68.0
Q ss_pred eeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecCC
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD 127 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~~ 127 (766)
.+|||+.-|.. + ..| ++|||||.++.|.|||.+-. ..|..+..+. +|.|+..-. .++. +.|.|+.+.+
T Consensus 2 k~G~L~K~~~~-~-~~W-kkRwfvL~~~~L~yyk~~~~----~~~~g~I~L~-~~~v~~~~~---~~~~-~~F~i~~~~~ 69 (125)
T cd01252 2 REGWLLKQGGR-V-KTW-KRRWFILTDNCLYYFEYTTD----KEPRGIIPLE-NVSIREVED---PSKP-FCFELFSPSD 69 (125)
T ss_pred cEEEEEEeCCC-C-CCe-EeEEEEEECCEEEEEcCCCC----CCceEEEECC-CcEEEEccc---CCCC-eeEEEECCcc
Confidence 58999987643 2 445 99999999999999985432 3466666666 455553211 1222 5778877665
Q ss_pred ------------------cCcceeeeccCHHHHHHHHHHHHHHHH
Q 004240 128 ------------------ESKKGEIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 128 ------------------~~~~~~~aa~~~eea~~W~~~~~~~~~ 154 (766)
....+.|.|.|.+|+..|+.||+.++.
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 124556999999999999999999987
No 41
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.53 E-value=5e-07 Score=79.42 Aligned_cols=94 Identities=12% Similarity=0.244 Sum_probs=63.7
Q ss_pred eeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecCC
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD 127 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~~ 127 (766)
|+|||+.-+... ...-++|||||.+..|.||+..+... ..|..+..+. .|.|+...... +.-+.|.|....
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~~--~~~~~~i~l~-~~~v~~~~~~~---~~~~~f~i~~~~- 71 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDYD--NAHVKEIDLR-RCTVRHNGKQP---DRRFCFEVISPT- 71 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCcccc--cccceEEecc-ceEEecCcccc---CCceEEEEEcCC-
Confidence 689999844332 33459999999999999999877532 2333333332 24444332211 234688887543
Q ss_pred cCcceeeeccCHHHHHHHHHHHHHH
Q 004240 128 ESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 128 ~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
+.+.|.|.|.+|+..|+.||+++
T Consensus 72 --~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 --KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred --cEEEEECCCHHHHHHHHHHHhcC
Confidence 78999999999999999999763
No 42
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.51 E-value=7.1e-07 Score=80.40 Aligned_cols=87 Identities=10% Similarity=0.174 Sum_probs=59.8
Q ss_pred eeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCC---CCCcceeeeecCceeEeeccceeeeCceEEEEEEee
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENP---GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~---~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn 124 (766)
++|||+..|. +-..| ++|||||++..|.|||.++...+ +.+||+.+.|- .+... . ..|.|-.
T Consensus 1 ~~G~L~K~~~--~~k~W-k~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~-----~~~~~-----~--~~F~i~~ 65 (91)
T cd01247 1 TNGVLSKWTN--YINGW-QDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIA-----AHEFD-----E--NRFDISV 65 (91)
T ss_pred CceEEEEecc--ccCCC-ceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEE-----cCCCC-----C--CEEEEEe
Confidence 5899999773 44566 99999999999999999876431 33444433222 22111 1 2344432
Q ss_pred cCCcCcceeeeccCHHHHHHHHHHHHH
Q 004240 125 RLDESKKGEIACATAGEARKWMEAFDQ 151 (766)
Q Consensus 125 ~~~~~~~~~~aa~~~eea~~W~~~~~~ 151 (766)
..++...|.|.|.+|...|++||+.
T Consensus 66 --~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 66 --NENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred --CCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 2347889999999999999999974
No 43
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.50 E-value=8.7e-07 Score=80.82 Aligned_cols=95 Identities=15% Similarity=0.223 Sum_probs=68.9
Q ss_pred eeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEee-ccceeeeCceEEEEEEeec
Q 004240 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEE-LGRRRFNHGDVYVMRLYNR 125 (766)
Q Consensus 47 ~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d-~g~~~~~~~~~yv~~~yn~ 125 (766)
..+|||..-|.+. ..+ ++|||||+++.|.|||.+.. ..|+....+. +|.|+. .+.+...|+ =++|.|..
T Consensus 3 ~k~G~L~Kkg~~~--k~W-kkRwfvL~~~~L~yyk~~~~----~~~~~~I~L~-~~~v~~~~~~~~~~~~-~~~F~I~t- 72 (100)
T cd01233 3 SKKGYLNFPEETN--SGW-TRRFVVVRRPYLHIYRSDKD----PVERGVINLS-TARVEHSEDQAAMVKG-PNTFAVCT- 72 (100)
T ss_pred ceeEEEEeeCCCC--CCc-EEEEEEEECCEEEEEccCCC----ccEeeEEEec-ccEEEEccchhhhcCC-CcEEEEEC-
Confidence 4789999987753 455 99999999999999998653 4566666666 565542 222111122 25677743
Q ss_pred CCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004240 126 LDESKKGEIACATAGEARKWMEAFDQAK 153 (766)
Q Consensus 126 ~~~~~~~~~aa~~~eea~~W~~~~~~~~ 153 (766)
.++.+.|.|.|.+|...||.+|...+
T Consensus 73 --~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 73 --KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred --CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 47789999999999999999998764
No 44
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.48 E-value=6.3e-07 Score=76.61 Aligned_cols=96 Identities=20% Similarity=0.304 Sum_probs=72.3
Q ss_pred eeeEEEEEccccc-ccccceeeeEEEecceeeeeccCCCCCCC--CCcceeeeecCceeEeeccceeeeCceEEEEEEee
Q 004240 48 YFGWVYHMGTNSI-GHEYCHLRFLFIRGKYVEMYKRDPHENPG--IKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (766)
Q Consensus 48 ~egw~~~~~~~~~-g~~~~~~ry~vl~~~~~~~yk~~p~~~~~--~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn 124 (766)
.+||++..+.... +...-++|||+|.++.|.+|+.++...+. ..|+... . |+...... +.-++|.|.+
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~-----~-v~~~~~~~---~~~~~F~i~~ 71 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEI-----S-VEEDPDGS---DDPNCFAIVT 71 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccce-----E-EEECCCCC---CCCceEEEEC
Confidence 4799999887765 55666999999999999999988866643 3344332 2 44433322 2347888888
Q ss_pred cCCcCcceeeeccCHHHHHHHHHHHHHH
Q 004240 125 RLDESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 125 ~~~~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
.......+.|-|.|.+|+..|+++|++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 72 KDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 7645789999999999999999999875
No 45
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.48 E-value=4.1e-07 Score=84.91 Aligned_cols=96 Identities=20% Similarity=0.411 Sum_probs=57.1
Q ss_pred eeeEEEEEcccccccccceeeeEEEe-cceeeeeccCCCCCCC--------CCcceeeeecCce---eEee----cccee
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIR-GKYVEMYKRDPHENPG--------IKPIRRGVIGPTL---MVEE----LGRRR 111 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~-~~~~~~yk~~p~~~~~--------~~pir~~~i~~~~---rv~d----~g~~~ 111 (766)
+|||||.-+.- +|..| +.|||||+ +..|.|||. |.+..+ ..=++++-++... .+.. +-+..
T Consensus 1 k~G~l~K~~~~-~~kgW-k~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKGW-KKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecCC-CCcCc-cccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 69999987654 99999 99999999 999999997 322210 1112222222211 1221 33556
Q ss_pred eeCceEEEEEEeecCCcCcceeeeccCHHHHHHHHHHHHHH
Q 004240 112 FNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 112 ~~~~~~yv~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
+|.+++++ ...++.+-|-|.|-||-..|++||++|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 67777666 456889999999999999999999876
No 46
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.46 E-value=9.7e-07 Score=79.90 Aligned_cols=91 Identities=11% Similarity=0.215 Sum_probs=64.8
Q ss_pred eeeEEEEEcccccccccceeeeEEEec--ceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEeec
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIRG--KYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNR 125 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~~--~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~ 125 (766)
++|||...|...+...+ ++|||||++ ..|.|||.+... .|+.+.-+...+.+.+...+ =+.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~d~----~p~G~I~L~~~~~~~~~~~~------~~~F~i~t- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQDA----KPLGRVDLSGAAFTYDPREE------KGRFEIHS- 68 (95)
T ss_pred CcccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCCcc----cccceEECCccEEEcCCCCC------CCEEEEEc-
Confidence 36999999987667778 999999984 589999966533 35555555543333322211 13566643
Q ss_pred CCcCcceeeeccCHHHHHHHHHHHHHH
Q 004240 126 LDESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 126 ~~~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
.++...|.|.|.+|...|+++|+.+
T Consensus 69 --~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 --NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred --CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 4677899999999999999999876
No 47
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.35 E-value=3e-06 Score=77.73 Aligned_cols=95 Identities=14% Similarity=0.237 Sum_probs=65.1
Q ss_pred eeeeEEEEEcccccccccceeeeEEEe-cceeeeeccCCCCCC-CCCcceeeeecCceeEe-eccceeeeCceEEEEEEe
Q 004240 47 EYFGWVYHMGTNSIGHEYCHLRFLFIR-GKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVE-ELGRRRFNHGDVYVMRLY 123 (766)
Q Consensus 47 ~~egw~~~~~~~~~g~~~~~~ry~vl~-~~~~~~yk~~p~~~~-~~~pir~~~i~~~~rv~-d~g~~~~~~~~~yv~~~y 123 (766)
..||||..-|. ...--++|||||. +..|.|||.+|.+.+ +..|+....|.++.-+. |..+ -+.|.|-
T Consensus 2 ~k~G~L~K~g~---~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~-------~~~F~i~ 71 (102)
T cd01241 2 VKEGWLHKRGE---YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPR-------PNTFIIR 71 (102)
T ss_pred cEEEEEEeecC---CCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCC-------cceEEEE
Confidence 47999999765 3333499999999 788889999997664 36788887776643322 2221 1455554
Q ss_pred ecCCcCcc--eeeeccCHHHHHHHHHHHHHH
Q 004240 124 NRLDESKK--GEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 124 n~~~~~~~--~~~aa~~~eea~~W~~~~~~~ 152 (766)
... .+.. -++.|.|.||...||+||+.+
T Consensus 72 ~~~-~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 72 CLQ-WTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred ecc-CCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 111 0111 267899999999999999876
No 48
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=98.29 E-value=4e-06 Score=77.41 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=66.8
Q ss_pred eeEEEEEccccc-ccccceeeeEEEecce-------eeeeccCCCCCCCCCcceeeeecCceeEeeccceee--eCceEE
Q 004240 49 FGWVYHMGTNSI-GHEYCHLRFLFIRGKY-------VEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRF--NHGDVY 118 (766)
Q Consensus 49 egw~~~~~~~~~-g~~~~~~ry~vl~~~~-------~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~--~~~~~y 118 (766)
||||.+-|.... +..--++|||||.+.- |.|||..+. ..|..+.-++. |.+.+.|.... +...=|
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~----~k~~g~I~L~~-~~~v~~~~~~~~~~~~~~~ 76 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRK----FKLEFVIDLES-CSQVDPGLLCTAGNCIFGY 76 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCC----CccceEEECCc-cEEEcccccccccCcccce
Confidence 899999766432 4444499999999875 599996543 45666666666 44444443211 122336
Q ss_pred EEEEeecCCcCcceeeeccCHHHHHHHHHHHHHH
Q 004240 119 VMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 119 v~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
.|.|.- ..+.+-|+|.|.||...|+.+|.+.
T Consensus 77 ~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 77 GFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 777762 4678999999999999999999764
No 49
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.15 E-value=9.4e-06 Score=74.44 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=61.3
Q ss_pred cccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecCCcCcceeeecc
Q 004240 58 NSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACA 137 (766)
Q Consensus 58 ~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~aa~ 137 (766)
.+.+.+| ++|||+|.++-|.|||.+. ..|+-+..+..-.-|++.+-..... -|+|.|-.. ++.+-|-|.
T Consensus 15 ~~~~~n~-KkRwF~Lt~~~L~Y~k~~~-----~~~~g~I~L~~i~~ve~v~~~~~~~--~~~fqivt~---~r~~yi~a~ 83 (98)
T cd01244 15 WKKVLHF-KKRYFQLTTTHLSWAKDVQ-----CKKSALIKLAAIKGTEPLSDKSFVN--VDIITIVCE---DDTMQLQFE 83 (98)
T ss_pred CccCcCC-ceeEEEECCCEEEEECCCC-----CceeeeEEccceEEEEEcCCcccCC--CceEEEEeC---CCeEEEECC
Confidence 3566666 9999999999999999433 3344455555555566666544332 278888664 468999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004240 138 TAGEARKWMEAFDQA 152 (766)
Q Consensus 138 ~~eea~~W~~~~~~~ 152 (766)
|.+|+..|++||+.+
T Consensus 84 s~~E~~~Wi~al~k~ 98 (98)
T cd01244 84 APVEATDWLNALEKQ 98 (98)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999763
No 50
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.12 E-value=1e-05 Score=68.52 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=68.9
Q ss_pred eeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeec-cceeeeCceEEEEEEeecC
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL-GRRRFNHGDVYVMRLYNRL 126 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~-g~~~~~~~~~yv~~~yn~~ 126 (766)
++||+++....+ .+--++||++|.++.+.+|+..+... ...|.....+.. +.|... +.+ +.-+.|.|-+..
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~-~~v~~~~~~~----~~~~~f~i~~~~ 72 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSG-AEVEESPDDS----GRKNCFEIRTPD 72 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCC-CEEEECCCcC----CCCcEEEEecCC
Confidence 589999877555 34449999999999999999777643 345556666666 444432 111 234677776655
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHH
Q 004240 127 DESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 127 ~~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
+ +.+.|.|.|.+|+..|+.+|++|
T Consensus 73 ~--~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 73 G--RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred C--cEEEEEeCCHHHHHHHHHHHhcC
Confidence 4 78999999999999999999864
No 51
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.03 E-value=0.00018 Score=73.02 Aligned_cols=127 Identities=21% Similarity=0.248 Sum_probs=90.4
Q ss_pred cCCHHHHHHHHhcCCCcccccccCCCCceEEEEee----------cCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcc
Q 004240 268 DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY----------DGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ 337 (766)
Q Consensus 268 daspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~l----------D~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~ 337 (766)
.++-++.-..|.+.-...-.++-+.+...+.|+.. +....|++..++ +|++.++|||+.|.......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 56777777777654211234688889999999998 566677777666 57789999999998887644
Q ss_pred ---------CCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEE--eeecCCcc
Q 004240 338 ---------DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML--EIHSSGWC 399 (766)
Q Consensus 338 ---------dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~--qvD~KGwi 399 (766)
...++|++..+.|+.+|+.+++|||.-. |-=.|+.++... ++...-.|.|++ ..|++|++
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~-SVE~ire~p~~~-~~~~~~~veW~MaT~SdaGG~I 160 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYE-SVERIRELPDTK-DDDEEGPVEWIMATRSDAGGSI 160 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEE-EEEEEEEccCCC-CCCCCCcEEEEEEEeeCCCCcc
Confidence 2379999999999999999999999754 333455553210 011233455554 55999999
No 52
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.02 E-value=2.6e-05 Score=72.38 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=64.0
Q ss_pred eeeEEEEEcccc------cccccceeeeEEEe-cceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEE
Q 004240 48 YFGWVYHMGTNS------IGHEYCHLRFLFIR-GKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (766)
Q Consensus 48 ~egw~~~~~~~~------~g~~~~~~ry~vl~-~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~ 120 (766)
+.||++.-+-.+ +...=-++|||||. +..|.|||.+|. ...|....-+..|..|.+- -... ++ =+.|
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~---~~~p~G~IdL~~~~~V~~~-~~~~-~~-~~~f 74 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP---TTLPQGTIDMNQCTDVVDA-EART-GQ-KFSI 74 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC---CcccceEEEccceEEEeec-cccc-CC-ccEE
Confidence 479999876663 33333489999997 689988887652 2455555556666666633 2111 11 2456
Q ss_pred EEeecCCcCcceeeeccCHHHHHHHHHHHH
Q 004240 121 RLYNRLDESKKGEIACATAGEARKWMEAFD 150 (766)
Q Consensus 121 ~~yn~~~~~~~~~~aa~~~eea~~W~~~~~ 150 (766)
+| ...++..-|.|.|.||...|+++|.
T Consensus 75 ~I---~tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 75 CI---LTPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EE---ECCCceEEEEeCCHHHHHHHHHHHH
Confidence 66 3346888999999999999999985
No 53
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.01 E-value=3.7e-05 Score=70.98 Aligned_cols=97 Identities=11% Similarity=0.216 Sum_probs=63.1
Q ss_pred eeeEEEEEccc-ccccccceeeeEEEecceeeeeccCCCCCCCCCcce-eeeecCceeEeeccceeeeCceEEEEEEeec
Q 004240 48 YFGWVYHMGTN-SIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIR-RGVIGPTLMVEELGRRRFNHGDVYVMRLYNR 125 (766)
Q Consensus 48 ~egw~~~~~~~-~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir-~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~ 125 (766)
.||||-.=|.. |.=.++ |+|||||.++.|.|||+++... |.+ +..+..+.-|..-....-+-..-+.|.|-.
T Consensus 2 ~~G~l~k~~g~~r~~K~W-krRwF~L~~~~L~y~K~~~~~~----~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~t- 75 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRW-KTRYFTLSGAQLLFQKGKSKDD----PDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFT- 75 (101)
T ss_pred cceEEeecCccceeeecc-eeEEEEEeCCEEEEEeccCccC----CCCceEEcccceEEeeccccccccccCcEEEEEc-
Confidence 47887654432 233455 8999999999999999887644 222 233333333433222111111136778744
Q ss_pred CCcCcceeeeccCHHHHHHHHHHHHHH
Q 004240 126 LDESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 126 ~~~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
.++..-|.|.|.+|+..|+++|..|
T Consensus 76 --p~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 76 --ADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred --CCceEEEEeCCHHHHHHHHHHHHhh
Confidence 4688999999999999999999877
No 54
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.99 E-value=5.9e-05 Score=69.07 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=66.1
Q ss_pred eeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCC-CCCCcceeeeecCceeEeeccceeeeCceEEEEEEeec
Q 004240 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN-PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNR 125 (766)
Q Consensus 47 ~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~-~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~ 125 (766)
.+|||+..++... .-.+.|||+|-+..|-|+|.+|... +.-.+....-+++ +.|++.- +...-+-|.|..+
T Consensus 3 ikeG~L~K~~~~~---~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~-~~v~~~~----~~~~~~~F~I~~~ 74 (101)
T cd01219 3 LKEGSVLKISSTT---EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSG-MQVCEGD----NLERPHSFLVSGK 74 (101)
T ss_pred ccceEEEEEecCC---CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEeccc-EEEEeCC----CCCcCceEEEecC
Confidence 4799998877543 3458899999888999999765432 1112222233333 6666531 2333455666433
Q ss_pred CCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004240 126 LDESKKGEIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 126 ~~~~~~~~~aa~~~eea~~W~~~~~~~~~ 154 (766)
.+-+.+.|.|.||=..||++|+.||+
T Consensus 75 ---~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 ---QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred ---CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999987
No 55
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.98 E-value=3.6e-05 Score=72.84 Aligned_cols=79 Identities=9% Similarity=0.296 Sum_probs=63.6
Q ss_pred eeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeecccee---------eeCceEEEEEEeecCCcCcceeeec
Q 004240 66 HLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRR---------FNHGDVYVMRLYNRLDESKKGEIAC 136 (766)
Q Consensus 66 ~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~---------~~~~~~yv~~~yn~~~~~~~~~~aa 136 (766)
++|||||++.+|.|||.... ..|.--.++|.+..|+..+.+. .++ .-|-|+|- +.+++++|.|
T Consensus 34 ~kRWFvlr~s~L~Y~~~~~~----~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~-~~~~~~i~---t~~R~~~l~a 105 (121)
T cd01254 34 QKRWFIVKESFLAYMDDPSS----AQILDVILFDVDFKVNGGGKEDISLAVELKDITG-LRHGLKIT---NSNRSLKLKC 105 (121)
T ss_pred cceeEEEeCCEEEEEcCCCC----CceeeEEEEcCCccEEeCCcccccccccccccCC-CceEEEEE---cCCcEEEEEe
Confidence 89999999999999993332 4666778889999999777651 233 34888884 4588999999
Q ss_pred cCHHHHHHHHHHHHHH
Q 004240 137 ATAGEARKWMEAFDQA 152 (766)
Q Consensus 137 ~~~eea~~W~~~~~~~ 152 (766)
.|.+++..|+++|++|
T Consensus 106 ~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 106 KSSRKLKQWMASIEDA 121 (121)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999876
No 56
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.95 E-value=3.2e-05 Score=71.07 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=62.2
Q ss_pred eEEEEEcccccccccceeeeEEEec----ceeeeeccCCCCCCCCCcceeeeec-CceeEeeccceeeeCceE---EEEE
Q 004240 50 GWVYHMGTNSIGHEYCHLRFLFIRG----KYVEMYKRDPHENPGIKPIRRGVIG-PTLMVEELGRRRFNHGDV---YVMR 121 (766)
Q Consensus 50 gw~~~~~~~~~g~~~~~~ry~vl~~----~~~~~yk~~p~~~~~~~pir~~~i~-~~~rv~d~g~~~~~~~~~---yv~~ 121 (766)
||+..-|.+ .-..+ +.|||+|.+ +.|.|||..+... |+ ++|+ .++.|. .+|...+ |.|.
T Consensus 3 G~l~K~g~~-~~K~w-K~rwF~l~~~~s~~~l~yf~~~~~~~----p~--gli~l~~~~V~-----~v~ds~~~r~~cFe 69 (98)
T cd01245 3 GNLLKRTKS-VTKLW-KTLYFALILDGSRSHESLLSSPKKTK----PI--GLIDLSDAYLY-----PVHDSLFGRPNCFQ 69 (98)
T ss_pred CccccCCCC-ccccc-ceeEEEEecCCCCceEEEEcCCCCCC----cc--ceeeccccEEE-----EccccccCCCeEEE
Confidence 676665431 12344 889999998 9999999777543 44 3544 666666 6676666 9999
Q ss_pred EeecCCcCcceeeeccCHHHHHHHHHHHHH
Q 004240 122 LYNRLDESKKGEIACATAGEARKWMEAFDQ 151 (766)
Q Consensus 122 ~yn~~~~~~~~~~aa~~~eea~~W~~~~~~ 151 (766)
|++...| ....|+|.+ ||+..||++|+.
T Consensus 70 l~~~~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 70 IVERALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EecCCCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 9999875 344566666 999999999874
No 57
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.94 E-value=5.4e-05 Score=68.90 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=59.5
Q ss_pred eeeEEEE--E----cccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecC-ceeEee-ccceeeeCceEEE
Q 004240 48 YFGWVYH--M----GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGP-TLMVEE-LGRRRFNHGDVYV 119 (766)
Q Consensus 48 ~egw~~~--~----~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~-~~rv~d-~g~~~~~~~~~yv 119 (766)
|||+++| . |++.-.+.+ ++|||||.|..|.+||.+.... +.+.....|+- ++.|+- ..- -+-=++
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~W-k~r~~vL~~~~L~~ykd~~~~~--~~~~~~~~i~l~~~~i~~~~~~----~k~~~~ 73 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSW-DNVYGVLCGQSLSFYKDEKMAA--ENVHGEPPVDLTGAQCEVASDY----TKKKHV 73 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCc-ceEEEEEeCCEEEEEecCcccc--cCCCCCCcEeccCCEEEecCCc----ccCceE
Confidence 5777774 1 333344455 9999999999999999654321 11111112221 333321 111 012278
Q ss_pred EEEeecCCcCcceeeeccCHHHHHHHHHHHHH
Q 004240 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQ 151 (766)
Q Consensus 120 ~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~ 151 (766)
|+|-++ ..+.+.|.|.|.||...|+.||+.
T Consensus 74 F~l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 74 FRLRLP--DGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred EEEEec--CCCEEEEECCCHHHHHHHHHHHhc
Confidence 888765 457889999999999999999964
No 58
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=97.92 E-value=8.6e-05 Score=70.05 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=80.2
Q ss_pred EEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeE
Q 004240 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 341 (766)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsY 341 (766)
+.+..|++|+++||++|.|.+. .++|.+.+.++++++.-+.. ..++..... + ...++|+....+ ..+..
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~--~~~~~p~~~~~~vl~~~~~~-~~~~~~~~~---~--~~~~~~~~~~~~--~~~~~- 70 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVER--YPEFLPWCTASRVLERDEDE-LEAELTVGF---G--GIRESFTSRVTL--VPPES- 70 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHh--hhhhcCCccccEEEEcCCCE-EEEEEEEee---c--cccEEEEEEEEe--cCCCE-
Confidence 4567899999999999999976 88999999999999988744 455554431 2 347788754433 23332
Q ss_pred EEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004240 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (766)
Q Consensus 342 VIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi 399 (766)
|...++.. +-...-+.|.++|+++ ++|+|+|-++++++|.+
T Consensus 71 -i~~~~~~g----------~~~~~~g~w~~~p~~~------~~T~v~~~~~~~~~~~l 111 (138)
T cd07813 71 -IEAELVDG----------PFKHLEGEWRFKPLGE------NACKVEFDLEFEFKSRL 111 (138)
T ss_pred -EEEEecCC----------ChhhceeEEEEEECCC------CCEEEEEEEEEEECCHH
Confidence 35555544 1122457999999985 57999999999999987
No 59
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.88 E-value=5.3e-05 Score=72.20 Aligned_cols=105 Identities=15% Similarity=0.263 Sum_probs=74.4
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCcee--EeeccceeeeCceEEEEEEe
Q 004240 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLM--VEELGRRRFNHGDVYVMRLY 123 (766)
Q Consensus 46 ~~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~r--v~d~g~~~~~~~~~yv~~~y 123 (766)
++|.|+|..+..-+ |..--++|||||+|.+|.||| +|.+.+...|+-+.-+..|+. |++--|+.-.+.-=|.+++.
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k-~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~ 78 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWK-YPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVW 78 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEc-CCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEe
Confidence 36889998765443 556669999999999998887 555565678999988888776 43334444444444666665
Q ss_pred ecCC---------------cCcceeeeccCHHHHHHHHHHHHHH
Q 004240 124 NRLD---------------ESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 124 n~~~---------------~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
.... ...+.-|||.|.||-..|+++|.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 79 RPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 4331 1223467899999999999999764
No 60
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.87 E-value=7.9e-05 Score=68.23 Aligned_cols=96 Identities=18% Similarity=0.303 Sum_probs=68.3
Q ss_pred eeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEEEEEEeecC
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~-~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~ 126 (766)
--|||=..+. +|..-=++.|+|||...+|.+||.+-...| .+.|+ .|++|.|.----.+++ +.|.+||+.
T Consensus 3 rkgwl~~~n~-~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpL------dnLk~Rdve~gf~sk~--~~FeLfnpd 73 (110)
T cd01256 3 RKGWLSISNV-GIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPL------DGLKLRDIEGGFMSRN--HKFALFYPD 73 (110)
T ss_pred eeeeEEeecc-ceecCCCcceEEEEecceeeeecccccccccceeec------cccEEEeecccccCCC--cEEEEEcCc
Confidence 3589876433 343445789999999999999997754443 34444 4455544321124444 899999875
Q ss_pred C-----cCcceeeeccCHHHHHHHHHHHHHH
Q 004240 127 D-----ESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 127 ~-----~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
. ..+|++|+|.|.||...||-+|..|
T Consensus 74 ~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 74 GRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 4 3589999999999999999999876
No 61
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.85 E-value=0.00014 Score=66.80 Aligned_cols=96 Identities=15% Similarity=0.259 Sum_probs=68.4
Q ss_pred eeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecC
Q 004240 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (766)
Q Consensus 47 ~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~ 126 (766)
..|||+..+.+.. .++|||+|=+..|=|+++.+.....-. ++..+=-.++.|+|.-= ..++-+-|.||++
T Consensus 3 ikEG~L~K~~~k~-----~~~R~~FLFnD~LlY~~~~~~~~~~y~-~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~~- 72 (99)
T cd01220 3 IRQGCLLKLSKKG-----LQQRMFFLFSDLLLYTSKSPTDQNSFR-ILGHLPLRGMLTEESEH---EWGVPHCFTIFGG- 72 (99)
T ss_pred eeEEEEEEEeCCC-----CceEEEEEccceEEEEEeecCCCceEE-EEEEEEcCceEEeeccC---CcCCceeEEEEcC-
Confidence 4699999987642 578999999999889988775431111 22333334555664211 1245678999955
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004240 127 DESKKGEIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 127 ~~~~~~~~aa~~~eea~~W~~~~~~~~~ 154 (766)
.+-+.+.|.|.||-..|+++|++||+
T Consensus 73 --~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 --QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 57799999999999999999999987
No 62
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.85 E-value=0.00043 Score=65.29 Aligned_cols=141 Identities=13% Similarity=0.048 Sum_probs=81.4
Q ss_pred EEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeE
Q 004240 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 341 (766)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsY 341 (766)
+++..|++||++||++|.|.+. .++|.+.+.++++++.-++. ..+|+...-..+. .+-+.-+.++. ...++...
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~--~~~w~p~v~~~~~l~~~~~~-~~~~~~~~~~~~~--~~~~~~v~~~~-~~~~~~~~ 75 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDN--LAEFIPNLAESRLLERNGNR-VVLEQTGKQGILF--FKFEARVVLEL-REREEFPR 75 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhh--HHhhCcCceEEEEEEcCCCE-EEEEEeeeEEEEe--eeeeEEEEEEE-EEecCCCc
Confidence 6788999999999999999976 78999999999999885443 3344321110000 00001111111 11111011
Q ss_pred EEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCCc-ccchhhhHHHHHHH
Q 004240 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQ 420 (766)
Q Consensus 342 VIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi~w~p~~~-s~~~~~i~~~mL~~ 420 (766)
.+..+.+..+ + ...-+.|.++|.++ +++|+|+|-+++++++.+ |.+. +.+... .+...
T Consensus 76 ~i~~~~~~g~--------~--~~~~g~w~~~~~~~-----~~~t~v~~~~~~~~~~~~---p~~l~~~~~~~---~~~~~ 134 (144)
T cd08866 76 ELDFEMVEGD--------F--KRFEGSWRLEPLAD-----GGGTLLTYEVEVKPDFFA---PVFLVEFVLRQ---DLPTN 134 (144)
T ss_pred eEEEEEcCCc--------h--hceEEEEEEEECCC-----CCeEEEEEEEEEEeCCCC---CHHHHHHHHHH---HHHHH
Confidence 1222222111 1 23457899999874 147999999999999988 4321 222233 33456
Q ss_pred HHHHHHHhh
Q 004240 421 VAGLKEYIG 429 (766)
Q Consensus 421 Va~LRe~~~ 429 (766)
+++||+..+
T Consensus 135 l~~lr~~ae 143 (144)
T cd08866 135 LLAIRAEAE 143 (144)
T ss_pred HHHHHHHHh
Confidence 677776543
No 63
>PF15409 PH_8: Pleckstrin homology domain
Probab=97.84 E-value=5.1e-05 Score=68.55 Aligned_cols=85 Identities=13% Similarity=0.349 Sum_probs=60.4
Q ss_pred eEEEEEcccccccccceeeeEEE--ecceeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEEEEEEeecC
Q 004240 50 GWVYHMGTNSIGHEYCHLRFLFI--RGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (766)
Q Consensus 50 gw~~~~~~~~~g~~~~~~ry~vl--~~~~~~~yk~~p~~~~-~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~ 126 (766)
|||..=++++ ..-| |+||||| +.-.|.||+.+..... +.+||+.++|..+. ..+--.+-.|-.+|.|.
T Consensus 1 G~llKkrr~~-lqG~-~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~--~~~~I~idsg~~i~hLK----- 71 (89)
T PF15409_consen 1 GWLLKKRRKP-LQGW-HKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK--KSRRIDIDSGDEIWHLK----- 71 (89)
T ss_pred Ccceeecccc-CCCc-eeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC--CCCEEEEEcCCeEEEEE-----
Confidence 6777754444 3444 9999999 9999999995544322 67899999887653 22222344555555443
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHH
Q 004240 127 DESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 127 ~~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
|.|.+|...|+.||+.|
T Consensus 72 ---------a~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 72 ---------AKSQEDFQRWVSALQKA 88 (89)
T ss_pred ---------cCCHHHHHHHHHHHHhc
Confidence 88999999999999987
No 64
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=97.71 E-value=8.4e-06 Score=93.14 Aligned_cols=92 Identities=16% Similarity=0.131 Sum_probs=80.9
Q ss_pred CCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccc
Q 004240 321 WQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCR 400 (766)
Q Consensus 321 ~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi~ 400 (766)
+++.|||+++| |.++++..||+|...++-.| |||.+..+-|+|+|++. .+++|+|++.+|+||..
T Consensus 575 ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~------g~sr~~~i~r~dlkg~~- 639 (674)
T KOG2200|consen 575 PHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGG------GQSRVTHICRVDLKGRS- 639 (674)
T ss_pred CCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCC------cchhhhhhhhhhcccCC-
Confidence 47899999999 78999999999966666666 99999999999999986 57899999999999999
Q ss_pred cccCCcccchhhhHHHHHHHHHHHHHHhhcCC
Q 004240 401 WKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 432 (766)
Q Consensus 401 w~p~~~s~~~~~i~~~mL~~Va~LRe~~~a~~ 432 (766)
+.||++-.++++.. .++.+|+.|....
T Consensus 640 --~~wy~k~fg~~c~~---~~~~~r~sf~~~~ 666 (674)
T KOG2200|consen 640 --PEWYNKSFGHLCCL---EVARIRDSFHTLQ 666 (674)
T ss_pred --chhhhccccchhhh---hhcccchhhcccc
Confidence 88899999998874 7888998887654
No 65
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.52 E-value=0.00046 Score=64.27 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=66.2
Q ss_pred ccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecCCcC-cceeee
Q 004240 57 TNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDES-KKGEIA 135 (766)
Q Consensus 57 ~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~~~~-~~~~~a 135 (766)
..++..-=.++|||+|+++.|.|||.++..+ ..|+=.+.--+|....|. ++-.+ -|.+++-...+.. +.+-|.
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv---~~~~~-kf~I~l~~ps~~~~r~y~l~ 85 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDV---NVAQQ-KFHIKLLIPTAEGMNEVWLR 85 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccc---ccccc-ceEEEEecCCccCCeEEEEE
Confidence 3444444458999999999999999988766 556655554455555543 01111 2999998876444 669999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 004240 136 CATAGEARKWMEAFDQAK 153 (766)
Q Consensus 136 a~~~eea~~W~~~~~~~~ 153 (766)
|.|-|+=++||.|.+.|.
T Consensus 86 cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 86 CDNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999999984
No 66
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.52 E-value=0.0026 Score=59.09 Aligned_cols=135 Identities=13% Similarity=0.038 Sum_probs=81.2
Q ss_pred EEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCc-eEEEEEEeccCcCCCCCCCCeEEEEEEEEEccC
Q 004240 260 LVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH-YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQD 338 (766)
Q Consensus 260 ~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~-tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~d 338 (766)
.+.....|++||++||++|.|.+. .++|.+.+.++++++.-+.. ....+..+.. + ..+. +|+. +. ...+.
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~--~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~-~~~~-~~-~~~~~ 73 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEA--YPEWSPKVKSVEVLLRDNDGRPEMVRIGVGA---Y-GIKD-TYAL-EY-TWDGA 73 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhh--hhhhCcceEEEEEeccCCCCCEEEEEEEEee---e-eEEE-EEEE-EE-EEcCC
Confidence 356677899999999999999976 88999999998888665432 2344433321 1 1211 3332 22 22222
Q ss_pred CeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCCc-ccchhhhHHHH
Q 004240 339 GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFAL 417 (766)
Q Consensus 339 GsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi~w~p~~~-s~~~~~i~~~m 417 (766)
..|..+++... +.....+.|.++|.++ +|+|+|-.+.+++|.+ +.+. ..+.+.+.
T Consensus 74 --~~i~~~~~~~~---------~~~~~~~~~~~~~~~~-------~t~vt~~~~~~~~~~~---~~~~~~~~~~~~~--- 129 (140)
T cd07819 74 --GSVSWTLVEGE---------GNRSQEGSYTLTPKGD-------GTRVTFDLTVELTVPL---PGFLKRKAEPLVL--- 129 (140)
T ss_pred --CcEEEEEeccc---------ceeEEEEEEEEEECCC-------CEEEEEEEEEEecCCC---CHHHHHHhhhHHH---
Confidence 22444444331 1222335799999863 6999999999999988 4432 22222222
Q ss_pred HHHHHHHHHH
Q 004240 418 LSQVAGLKEY 427 (766)
Q Consensus 418 L~~Va~LRe~ 427 (766)
...+.+||++
T Consensus 130 ~~~~~~l~~~ 139 (140)
T cd07819 130 DEALKGLKKR 139 (140)
T ss_pred HHHHHhHhhh
Confidence 2455666654
No 67
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.00027 Score=75.01 Aligned_cols=97 Identities=20% Similarity=0.421 Sum_probs=72.0
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEEEEEEee
Q 004240 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (766)
Q Consensus 46 ~~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~-~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn 124 (766)
+.-|||+..+|.|+. .+| .+|+|||..++|.||.---...| +.+|+--+-|. .|+ .-+.=+.|.+||
T Consensus 260 pdREGWLlKlgg~rv-ktW-KrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir---~Ve-------dP~kP~cfEly~ 327 (395)
T KOG0930|consen 260 PDREGWLLKLGGNRV-KTW-KRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIR---EVE-------DPKKPNCFELYI 327 (395)
T ss_pred ccccceeeeecCCcc-cch-hheeEEeecceeeeeeeccCCCCCcceecccccee---ecc-------CCCCCCeEEEec
Confidence 348999999999853 345 88999999999999875544444 34555444331 122 234457899999
Q ss_pred cCCcCcce-------------------eeeccCHHHHHHHHHHHHHHHH
Q 004240 125 RLDESKKG-------------------EIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 125 ~~~~~~~~-------------------~~aa~~~eea~~W~~~~~~~~~ 154 (766)
.+++..+| +|.|.|.||-..||++|+.++.
T Consensus 328 ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 328 PSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred CCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 99876665 4788999999999999999987
No 68
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.27 E-value=0.0024 Score=60.52 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=71.1
Q ss_pred eeEEEEE-------cccccccccceeeeEEEecceeeeeccCCCCCCC---CCcceeeeecCce-eEeeccceeeeCceE
Q 004240 49 FGWVYHM-------GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPG---IKPIRRGVIGPTL-MVEELGRRRFNHGDV 117 (766)
Q Consensus 49 egw~~~~-------~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~---~~pir~~~i~~~~-rv~d~g~~~~~~~~~ 117 (766)
||+++|= .+.++|..+=++||.||+|..|..||.+=...+. +.+-....|.+++ .|. ....+.=
T Consensus 3 ~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia-----~dy~Kr~ 77 (117)
T cd01230 3 HGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRA-----SDYSKKP 77 (117)
T ss_pred CcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEee-----ccccCCC
Confidence 5666652 1234556566999999999999999987431111 1223455566665 666 6677778
Q ss_pred EEEEEeecCCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004240 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 118 yv~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~~ 154 (766)
+||+|-... .+.+-|-|.+.||+..|+.+|..|+.
T Consensus 78 ~VF~L~~~~--g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 78 HVFRLRTAD--WREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred cEEEEEcCC--CCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 899998754 46778889999999999999998875
No 69
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.16 E-value=0.008 Score=56.09 Aligned_cols=114 Identities=10% Similarity=-0.143 Sum_probs=69.6
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCe
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGs 340 (766)
++.+..+++||++||++|.|.+. ..+|.+.+.+.++++ ++.-.++...+. ++.+.|.-...+.....++..
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~~--~~~w~p~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPEV--LARCIPGCESLEKIG---PNEYEATVKLKV----GPVKGTFKGKVELSDLDPPES 73 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHHH--HHhhccchhhccccC---CCeEEEEEEEEE----ccEEEEEEEEEEEEecCCCcE
Confidence 56777899999999999999976 789999888765543 343334433332 123333322223222233334
Q ss_pred EEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004240 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (766)
Q Consensus 341 YVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi 399 (766)
|.+-.... .+ .+.....+-|.++|.+ ++|+|+|-.+++++|.+
T Consensus 74 ~~~~~~~~-~~--------~~~~~~~~~~~l~~~~-------~gT~v~~~~~~~~~g~l 116 (144)
T cd05018 74 YTITGEGK-GG--------AGFVKGTARVTLEPDG-------GGTRLTYTADAQVGGKL 116 (144)
T ss_pred EEEEEEEc-CC--------CceEEEEEEEEEEecC-------CcEEEEEEEEEEEccCh
Confidence 44432221 11 1112345678999973 36999999999999976
No 70
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.90 E-value=0.0084 Score=57.08 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=72.0
Q ss_pred eeEEEEEcccc--cccccceeeeEEEec--ceeeeeccCCC-CCCCCCcceeeeecCceeEeeccceeeeC---ceEEEE
Q 004240 49 FGWVYHMGTNS--IGHEYCHLRFLFIRG--KYVEMYKRDPH-ENPGIKPIRRGVIGPTLMVEELGRRRFNH---GDVYVM 120 (766)
Q Consensus 49 egw~~~~~~~~--~g~~~~~~ry~vl~~--~~~~~yk~~p~-~~~~~~pir~~~i~~~~rv~d~g~~~~~~---~~~yv~ 120 (766)
-.|||.|.++. .+..=.|.|||.|.. +.|.-...+|. .++...=.+++.|+.=..|.|.-.-..-- .--|.|
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si 91 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSI 91 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEE
Confidence 45999998876 334568999999999 45555565674 34445567788888888887762211111 023455
Q ss_pred EEeecCCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004240 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 121 ~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~~ 154 (766)
.|. ...+.|+|.|.|.|++..|+++|+..++
T Consensus 92 ~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 92 IIV---TPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred EEE---cCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 544 3357999999999999999999987754
No 71
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=96.82 E-value=0.019 Score=53.89 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=66.4
Q ss_pred EEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEE--EEEEEccCCe
Q 004240 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFS--RQWFRGQDGT 340 (766)
Q Consensus 263 a~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~L--RswRr~~dGs 340 (766)
...+|++||++||++|.|... -++|.+. ...++++. ++....++. +. ...+++... ..+..+..+.
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~~--~p~~~p~-~~~~~~~~-~~~~~~~~~-~~-------~~~~g~~~~~~~~~~~~~~~~ 70 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAER--WPEFLPT-VHVERLEL-DGGVERLRM-WA-------TAFDGSVHTWTSRRVLDPEGR 70 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHHh--hhccCCC-ceEEEEEE-cCCEEEEEE-EE-------EcCCCcEEEEEEEEEEcCCCC
Confidence 356899999999999999976 6789998 77777776 344344442 11 111222211 1111223232
Q ss_pred EEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004240 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (766)
Q Consensus 341 YVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi 399 (766)
. |+...+.-+ +.. ...-+-|.++|.++ .+|+|||.+..++++.+
T Consensus 71 ~-i~~~~~~~~------~~~--~~~~g~w~~~~~~~------~~t~Vt~~~~~~~~~~~ 114 (142)
T cd08861 71 R-IVFRQEEPP------PPV--ASMSGEWRFEPLGG------GGTRVTLRHDFTLGIDS 114 (142)
T ss_pred E-EEEEEeeCC------CCh--hhheeEEEEEECCC------CcEEEEEEEEEEECCCC
Confidence 2 333333211 111 12345899999874 47999999999999877
No 72
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.63 E-value=0.066 Score=49.70 Aligned_cols=108 Identities=11% Similarity=0.036 Sum_probs=67.7
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCe
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGs 340 (766)
+.....|++|+++||+++.|... .++|.+.+.+++++.. . .. .+.++. |. ...++|..- .....++..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~--~~~w~~~~~~~~~~~~---~-~~-~~~~~~---~~-g~~~~~~~~-v~~~~~~~~ 69 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFEN--LPRFMSHVESVEQLDD---T-RS-HWKAKG---PA-GLSVEWDAE-ITEQVPNER 69 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhh--hHHHhhhhcEEEEcCC---C-ce-EEEEec---CC-CCcEEEEEE-EeccCCCCE
Confidence 45677899999999999999977 8899998887776643 1 11 222232 21 344566442 122223332
Q ss_pred EEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004240 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (766)
Q Consensus 341 YVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi 399 (766)
|.......+. .. .+-|.++|.++ ++|+||+.++.++.+.+
T Consensus 70 --i~~~~~~~~~--~~---------~~~~~f~~~~~------~~T~vt~~~~~~~~~~~ 109 (139)
T cd07817 70 --IAWRSVEGAD--PN---------AGSVRFRPAPG------RGTRVTLTIEYEPPGGA 109 (139)
T ss_pred --EEEEECCCCC--Cc---------ceEEEEEECCC------CCeEEEEEEEEECCcch
Confidence 3334433221 22 24566788764 57999999999999876
No 73
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=96.56 E-value=0.087 Score=51.40 Aligned_cols=137 Identities=17% Similarity=0.112 Sum_probs=80.7
Q ss_pred EEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEE---EEccCC
Q 004240 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQW---FRGQDG 339 (766)
Q Consensus 263 a~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRsw---Rr~~dG 339 (766)
-..+|++||++||++|.|... -++|.+.+.+.++++. +++....-..+... .. .+ ...| +..+..
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~--~P~~~~~~~~~~~l~~-~~~~~~~r~~i~~~-----~~--g~--~~~w~s~~~~~~~ 72 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIAT--WPDLFSEYAEAEVLEE-DGDTVRFRLTMHPD-----AN--GT--VWSWVSERTLDPV 72 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhh--hhhhccceEEEEEEEe-cCCeEEEEEEEEec-----cC--CE--EEEEEEEEEecCC
Confidence 456799999999999999976 7899999999999886 44434443332221 11 12 2233 222333
Q ss_pred eEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCCcccchhhhHHHHHH
Q 004240 340 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLS 419 (766)
Q Consensus 340 sYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~ 419 (766)
.+.|.++ +.+. +|-. ..-+.|.++|++. .|+|++......++-.+....+....... .+-.
T Consensus 73 ~~~i~~~--~~~~-~p~~------~m~~~W~f~~~~~-------gT~V~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 133 (146)
T cd08860 73 NRTVRAR--RVET-GPFA------YMNIRWEYTEVPE-------GTRMRWVQDFEMKPGAPVDDAAMTDRLNT---NTRA 133 (146)
T ss_pred CcEEEEE--EecC-CCcc------eeeeeEEEEECCC-------CEEEEEEEEEEECCCCccchHHHHHHHhc---ccHH
Confidence 4545554 2333 2321 2456799999863 39999999998775332111111222222 2234
Q ss_pred HHHHHHHHhhc
Q 004240 420 QVAGLKEYIGA 430 (766)
Q Consensus 420 ~Va~LRe~~~a 430 (766)
.+++||...++
T Consensus 134 ~l~~Lk~~aE~ 144 (146)
T cd08860 134 QMARIKKKIEA 144 (146)
T ss_pred HHHHHHHHhhh
Confidence 66777776654
No 74
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=96.42 E-value=0.31 Score=44.89 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=74.8
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCe
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGs 340 (766)
+..+..|++||++||++|.|... ...|.+.+..++++. ++...+.. .+... +. .-+..+....++++.
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~--~~~w~~~~~~~~~~~--~~~~~~~~-~~~~~---g~----~~~~~~i~~~~~~~~ 71 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPEN--WPRWWPGVKSVELLS--GGGPGTER-TVRVA---GR----GTVREEITEYDPEPR 71 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTG--GGGTSTTEEEEEEEE--ECSTEEEE-EEEEC---SC----SEEEEEEEEEETTTT
T ss_pred EEEEEEECCCHHHHHHHHhChhh--hhhhhhceEEEEEcc--ccccceeE-EEEec---cc----cceeEEEEEecCCCc
Confidence 56677899999999999999876 778999888777666 23332222 23321 11 223333333334233
Q ss_pred EEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCCcccchhhhHHHHHHH
Q 004240 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (766)
Q Consensus 341 YVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~ 420 (766)
.+- .+.+ ..++..+ -..|.+.|.++ +|+|++..++++ |+..|... ..+...+-..+-..
T Consensus 72 ~~~-~~~~-------~~~~~~~---~~~~~~~~~~~-------gt~v~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~ 130 (139)
T PF10604_consen 72 RIT-WRFV-------PSGFTNG---TGRWRFEPVGD-------GTRVTWTVEFEP-GLPGWLAG--PLLRPAVKRIVREA 130 (139)
T ss_dssp EEE-EEEE-------SSSSCEE---EEEEEEEEETT-------TEEEEEEEEEEE-SCTTSCHH--HHHHHHHHHHHHHH
T ss_pred EEE-EEEE-------ecceeEE---EEEEEEEEcCC-------CEEEEEEEEEEE-eccchhhH--HHHHHHHHHHHHHH
Confidence 322 2222 1122222 45699999874 399999999998 55543211 11222222223355
Q ss_pred HHHHHHHh
Q 004240 421 VAGLKEYI 428 (766)
Q Consensus 421 Va~LRe~~ 428 (766)
+++|+..+
T Consensus 131 l~~l~~~~ 138 (139)
T PF10604_consen 131 LENLKRAA 138 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 66666654
No 75
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=96.38 E-value=0.13 Score=47.29 Aligned_cols=137 Identities=16% Similarity=0.022 Sum_probs=77.2
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCe
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGs 340 (766)
++.+..|++|+++||++|.|.+. ...|.+.+.+.++.+.-+ .....+..... .. ..+. -+.. ..+...
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~~--~~~w~~~~~~~~~~~~~~-~~g~~~~~~~~----~g---~~~~-~~i~-~~~~~~ 70 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFGG--LHKWHPAVASCELEGGGP-GVGAVRTVTLK----DG---GTVR-ERLL-ALDDAE 70 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcCc--hhhhccCcceEEeecCCC-CCCeEEEEEeC----CC---CEEE-EEeh-hcCccC
Confidence 57788899999999999999876 779999887777665432 11112211111 11 1111 1111 112221
Q ss_pred EEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCCcccchhhhHHHHHHH
Q 004240 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (766)
Q Consensus 341 YVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi~w~p~~~s~~~~~i~~~mL~~ 420 (766)
..+....+.- . .+ .....+-|.++|.++ ++|+|+|-.+.+++|.+ +. ..+...+.-.+-..
T Consensus 71 ~~i~~~~~~~-~-~~------~~~~~~~~~~~~~~~------~~t~v~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~ 131 (140)
T cd07821 71 RRYSYRIVEG-P-LP------VKNYVATIRVTPEGD------GGTRVTWTAEFDPPEGL---TD--ELARAFLTGVYRAG 131 (140)
T ss_pred CEEEEEecCC-C-CC------cccceEEEEEEECCC------CccEEEEEEEEecCCCc---ch--HHHHHHHHHHHHHH
Confidence 2344444321 0 11 112346789999874 47999999999999865 22 11222333333456
Q ss_pred HHHHHHHh
Q 004240 421 VAGLKEYI 428 (766)
Q Consensus 421 Va~LRe~~ 428 (766)
+++|++++
T Consensus 132 l~~L~~~~ 139 (140)
T cd07821 132 LAALKAAL 139 (140)
T ss_pred HHHHHHhh
Confidence 77777765
No 76
>PRK10724 hypothetical protein; Provisional
Probab=95.80 E-value=0.24 Score=49.29 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=77.7
Q ss_pred ceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcc
Q 004240 258 GVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ 337 (766)
Q Consensus 258 ~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~ 337 (766)
.+.++.+..|++|++++|++|.|.+. -++|=+.+.+++++++-++.. +...... + . +. ..-|..-+.+ ..
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve~--yp~flp~~~~s~vl~~~~~~~-~a~l~v~--~-~-g~-~~~f~srv~~--~~ 83 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQS--YPQFLPGCTGSRVLESTPGQM-TAAVDVS--K-A-GI-SKTFTTRNQL--TS 83 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHH--HHHhCcccCeEEEEEecCCEE-EEEEEEe--e-C-Cc-cEEEEEEEEe--cC
Confidence 46788889999999999999999976 789999999999999976542 1111111 1 1 11 2334443333 22
Q ss_pred CCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004240 338 DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (766)
Q Consensus 338 dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi 399 (766)
+. -|....++.| - +.+-+.|.++|.++ ++|+|++.++..++-.+
T Consensus 84 ~~--~I~~~~~~Gp----F------~~l~g~W~f~p~~~------~~t~V~~~l~fef~s~l 127 (158)
T PRK10724 84 NQ--SILMQLVDGP----F------KKLIGGWKFTPLSQ------EACRIEFHLDFEFTNKL 127 (158)
T ss_pred CC--EEEEEecCCC----h------hhccceEEEEECCC------CCEEEEEEEEEEEchHH
Confidence 33 2444555432 1 12678999999875 46999999999988777
No 77
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=95.57 E-value=0.21 Score=46.24 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=72.0
Q ss_pred ecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEEEEe
Q 004240 267 IDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQF 346 (766)
Q Consensus 267 Vdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVIa~~ 346 (766)
|++|+++||++|.|.+. -++|-+.+.++++++.-++++.+.. .... ...++.|+.-....... . +...
T Consensus 1 V~ap~~~V~~~i~D~e~--~~~~~p~~~~v~vl~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~--~--~~~~ 68 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN--YPRFFPPVKEVRVLERDGDGMRARW-EVKF-----GGIKRSWTSRVTEDPPE--R--IRFE 68 (130)
T ss_dssp ESS-HHHHHHHHTTGGG--HHHHCTTEEEEEEEEEECCEEEEEE-EECT-----TTTCEEEEEEEEEECTT--T--EEEE
T ss_pred CCCCHHHHHHHHHHHHH--HHHhCCCCceEEEEEeCCCeEEEEE-EEec-----CCEEEEEEEEEEEEEee--e--eeee
Confidence 68999999999999976 7899999999999999988555522 2221 23345665433332222 2 2222
Q ss_pred eccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004240 347 PAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (766)
Q Consensus 347 SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi 399 (766)
.+. |-. ...-+.|-++|.+++ +++.+|.+++-..+++++.+
T Consensus 69 ~~~--------g~~--~~~~g~W~~~~~~~~--~~g~~~~v~~~~~~~~~~~~ 109 (130)
T PF03364_consen 69 QIS--------GPF--KSFEGSWRFEPLGGN--EGGTRTRVTYDYEVDPPGPL 109 (130)
T ss_dssp SSE--------TTE--EEEEEEEEEEEETTE--CCEEEEEEEEEEEEETSSSS
T ss_pred ecC--------CCc--hhcEEEEEEEECCCC--cCCCEEEEEEEEEEecCcHh
Confidence 221 111 234578999999841 12368999999999999999
No 78
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.16 E-value=0.35 Score=45.65 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=74.1
Q ss_pred eeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeec--cceee-eCceEEEEEEe
Q 004240 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL--GRRRF-NHGDVYVMRLY 123 (766)
Q Consensus 47 ~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~--g~~~~-~~~~~yv~~~y 123 (766)
.|+|=+.++..++. ..+.|+|+|=.++|=|=|++-... ++.=.|.-+.-..|.|+|+ |++.. +..+=+-|.||
T Consensus 3 i~~Gel~~~s~~~g---~~q~R~~FLFD~~LI~CKkd~~r~-~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 3 FLQGEATRQKQNKG---WNSSRVLFLFDHQMVLCKKDLIRR-DHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred eEeeeEEEEecccC---CcccEEEEEecceEEEEecccccC-CcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 36677776654322 235899999999999999764333 4566777777788889887 66553 23456789999
Q ss_pred ecCCcCcceeeeccCHHHHHHHHHHHHH
Q 004240 124 NRLDESKKGEIACATAGEARKWMEAFDQ 151 (766)
Q Consensus 124 n~~~~~~~~~~aa~~~eea~~W~~~~~~ 151 (766)
|.. .+.-+.+-|.|+||-.+||+||..
T Consensus 79 ~~~-~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SES-TDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EcC-CCeEEEEEECCHHHHHHHHHHHHH
Confidence 984 366789999999999999999964
No 79
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=95.16 E-value=0.16 Score=48.01 Aligned_cols=99 Identities=15% Similarity=0.230 Sum_probs=56.3
Q ss_pred eeeEEEEE------cccc--cccccceeeeEEEecceeeeeccCCC--C--C------CCCCcceeeeecCceeEeeccc
Q 004240 48 YFGWVYHM------GTNS--IGHEYCHLRFLFIRGKYVEMYKRDPH--E--N------PGIKPIRRGVIGPTLMVEELGR 109 (766)
Q Consensus 48 ~egw~~~~------~~~~--~g~~~~~~ry~vl~~~~~~~yk~~p~--~--~------~~~~pir~~~i~~~~rv~d~g~ 109 (766)
.|||++|- |.+. -.|++ ++=|.||.|..|.+||.+.. . . +...|+.+..|.+++--...+-
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~W-k~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSW-KQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---E-EEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCc-cEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 58998882 3333 34555 78899999999999998321 1 1 1134556666665554444443
Q ss_pred eeeeCceEEEEEEeecCCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004240 110 RRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (766)
Q Consensus 110 ~~~~~~~~yv~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~ 153 (766)
.. .+ +||+|= .....+.-|-|.|.+|...|+.+|..++
T Consensus 81 ~K--r~--~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 TK--RK--NVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TT--CS--SEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cc--CC--eEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 32 33 344442 3446789999999999999999998764
No 80
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.03 E-value=0.087 Score=49.95 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=55.7
Q ss_pred eeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEee------------ccceeeeCc
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEE------------LGRRRFNHG 115 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d------------~g~~~~~~~ 115 (766)
.||||+|+-..- .--+++|++|+.|.+.||+.+-. ..|.|-+....=+.|+. +=-|+.-+.
T Consensus 2 kEGWmVHyT~~d---~~rKRhYWrLDsK~Itlf~~e~~----skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~ 74 (117)
T cd01239 2 KEGWMVHYTSSD---NRRKKHYWRLDSKAITLYQEESG----SRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTT 74 (117)
T ss_pred ccceEEEEecCc---cceeeeEEEecCCeEEEEEcCCC----CeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecC
Confidence 599999986543 22357899999999999997553 33444444444444432 222344444
Q ss_pred eEEEEE---EeecC-CcCcce--eeeccCHHHHHHHHHHHHHH
Q 004240 116 DVYVMR---LYNRL-DESKKG--EIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 116 ~~yv~~---~yn~~-~~~~~~--~~aa~~~eea~~W~~~~~~~ 152 (766)
++|-.- .|+.. +...++ -......+-|..|-.||++|
T Consensus 75 ~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 75 NVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 444321 12211 100111 12344667789999998876
No 81
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.17 E-value=2.2 Score=37.70 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=64.4
Q ss_pred EEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEc--cCC
Q 004240 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG--QDG 339 (766)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~--~dG 339 (766)
+....|++|+++||+.|.|... ..+|.+.+..+++++.........+. ... ......++. .+.+... +..
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~-~~v~~~~~~~~~ 73 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPER--WPEWSPGLERVEVLGGGEGGVGARFV-GGR----KGGRRLTLT-SEVTEVDPPRPG 73 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhh--hhhhCcccceEEEcCCCCccceeEEE-EEe----cCCccccce-EEEEEecCCCce
Confidence 4567899999999999999876 88999998888877653222112111 110 000111111 1111111 112
Q ss_pred eEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004240 340 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (766)
Q Consensus 340 sYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi 399 (766)
.|.+ .+-.+. ......|.+.|.++ .+|+|++-...+++++.
T Consensus 74 ~~~~--~~~~~~-----------~~~~~~~~~~~~~~------~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 74 RFRV--TGGGGG-----------VDGTGEWRLEPEGD------GGTRVTYTVEYDPPGPL 114 (141)
T ss_pred EEEE--ecCCCC-----------cceeEEEEEEECCC------CcEEEEEEEEEecCCcc
Confidence 2222 111111 13356788888764 47999999999999987
No 82
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.03 E-value=1.5 Score=40.21 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=30.1
Q ss_pred EEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEE
Q 004240 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 300 (766)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE 300 (766)
.....|++|+++||++|.|... ..+|.+.+..++.+.
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~--~~~w~~~~~~~~~~~ 38 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFEN--APEWDPGVVEVEKIT 38 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccc--hhhhccCceEEEEcC
Confidence 3456799999999999999876 779999877666654
No 83
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=93.36 E-value=0.005 Score=65.22 Aligned_cols=156 Identities=12% Similarity=-0.021 Sum_probs=107.9
Q ss_pred CEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEec
Q 004240 235 WKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYD 314 (766)
Q Consensus 235 Wkl~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~k 314 (766)
|.+....+-+.++.+..+. ..+.+.++..+.+......-..+.-... +..|+.--.-...++.+..++++....+.
T Consensus 27 ~s~~k~~~~v~~~~~a~~~--~~~~i~~v~~~~~lf~~~~~~~i~~~~~--i~~~~~g~~v~~~~~~~~~~~~~~~s~~~ 102 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK--PKGNISRVRRFFCLFVTEDLVFISLLWL--IELLQNGPEVYNMLEKIQKNTDIWTSEFD 102 (241)
T ss_pred HHHHhhcceeEEeccCCcC--cCCcccccceeeccccccchheeecchh--hHHHhccchHHHHHHHHHhheeeeeEecH
Confidence 6666666666666665432 3334556665555443333333222222 34444444566778888889888886655
Q ss_pred cCcCCCCCCCCeEEEEEEEEEccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeee
Q 004240 315 PKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIH 394 (766)
Q Consensus 315 p~~lP~~vspRDFV~LRswRr~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD 394 (766)
.. .-...++|+|+...+..+...+.-....++++++-+++...++|+..+++|++..|++.+ +..+...--.+.|
T Consensus 103 ~~-~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~----~~~~~~~~~~~~d 177 (241)
T KOG3845|consen 103 SF-NVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIE----PFILAWLREWFLD 177 (241)
T ss_pred hh-hhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCc----chhHHHHHHHHhh
Confidence 43 236789999999999998877767777889999999999999999999999999999973 2334444445778
Q ss_pred cCCcc
Q 004240 395 SSGWC 399 (766)
Q Consensus 395 ~KGwi 399 (766)
.+|..
T Consensus 178 ~rg~~ 182 (241)
T KOG3845|consen 178 LRGLP 182 (241)
T ss_pred cccCC
Confidence 88887
No 84
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.53 E-value=0.17 Score=55.88 Aligned_cols=101 Identities=19% Similarity=0.312 Sum_probs=67.1
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEe--cceeeeeccCCCCC-CCCCcceeeeec-CceeEeeccceeeeCceEEE
Q 004240 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIR--GKYVEMYKRDPHEN-PGIKPIRRGVIG-PTLMVEELGRRRFNHGDVYV 119 (766)
Q Consensus 44 ~~~~~egw~~~~~~~~~g~~~~~~ry~vl~--~~~~~~yk~~p~~~-~~~~pir~~~i~-~~~rv~d~g~~~~~~~~~yv 119 (766)
..++.|||+-.-|-. =+.| |.|||+|. |.++ =||.+|++. |...|+---.|- .-+|-.|+-|-. +|.|
T Consensus 13 ~~vvkEgWlhKrGE~--IknW-RpRYF~l~~DG~~~-Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPn----tFii 84 (516)
T KOG0690|consen 13 EDVVKEGWLHKRGEH--IKNW-RPRYFLLFNDGTLL-GYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPN----TFII 84 (516)
T ss_pred hhhHHhhhHhhcchh--hhcc-cceEEEEeeCCceE-eeccCCccCCCCcccccchhhhhhhhhhccCCCCc----eEEE
Confidence 456799999764422 1334 89999996 4455 689999774 445777765554 445666666543 4555
Q ss_pred EEEeecCCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004240 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 120 ~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~~ 154 (766)
=|+-=+.- =.-++.+.|++|-..|++||+.++.
T Consensus 85 RcLQWTTV--IERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 85 RCLQWTTV--IERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred Eeeeeeee--eeeeeecCCHHHHHHHHHHHHHHhh
Confidence 44421111 1127899999999999999998876
No 85
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=92.36 E-value=3.4 Score=39.47 Aligned_cols=140 Identities=13% Similarity=-0.002 Sum_probs=68.5
Q ss_pred EEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcc-CC-
Q 004240 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ-DG- 339 (766)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~-dG- 339 (766)
..+..|++||++||+.|.|... -..|.+. ++.++.++++.-..-...+. ++++ ..|-.--.+...+ .+
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~--~~~~~pg---~~~~~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~ 71 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIER--VAPCLPG---ASLTEVEGDDEYKGTVKVKL----GPIS-ASFKGTARLLEDDEAAR 71 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHH--HHhcCCC---ceeccccCCCeEEEEEEEEE----ccEE-EEEEEEEEEEeccCCCc
Confidence 3456799999999999999865 5567664 55555566554332223321 1121 1221100111111 11
Q ss_pred eEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCCcccchhhhHHHHH-
Q 004240 340 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALL- 418 (766)
Q Consensus 340 sYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi~w~p~~~s~~~~~i~~~mL- 418 (766)
.+.+....- . ....|.+++.+ -|.+.| .+ ..|+|+|-.+++..|.+ +......-+...-+++
T Consensus 72 ~~~~~~~g~---~-~~~~g~~~~~~---~~~l~~-~~------~gT~v~~~~~~~~~g~l---~~l~~~~v~~~~~~~~~ 134 (146)
T cd07823 72 RAVLEATGK---D-ARGQGTAEATV---TLRLSP-AG------GGTRVTVDTDLALTGKL---AQFGRGGIGDVAGRLLA 134 (146)
T ss_pred EEEEEEEEe---c-CCCcceEEEEE---EEEEEe-cC------CcEEEEEEEEEEEeeEh---HHhChhHHHHHHHHHHH
Confidence 121111110 0 00112223322 366777 32 47999999999999998 3322222233333333
Q ss_pred HHHHHHHHHh
Q 004240 419 SQVAGLKEYI 428 (766)
Q Consensus 419 ~~Va~LRe~~ 428 (766)
..+++|++.+
T Consensus 135 ~~~~~l~~~~ 144 (146)
T cd07823 135 QFAANLEARL 144 (146)
T ss_pred HHHHHHHHHh
Confidence 3455565544
No 86
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=91.63 E-value=8.4 Score=35.49 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=33.4
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEee
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY 302 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~l 302 (766)
+.....|+||+++||+++.|... .++|.+.+..++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~--~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVEN--WPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhh--cccccCcceEEEEecCC
Confidence 56677899999999999999876 78999988877776544
No 87
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.30 E-value=1.7 Score=40.67 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=58.6
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCC----CCCCcceeeeecCceeEeeccceeeeCceEEEEE
Q 004240 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN----PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMR 121 (766)
Q Consensus 46 ~~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~----~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~ 121 (766)
..+||=|..+-+. =+..|||+|=+..|=|=+..+..+ ....|+.. +.|++.-= ...+-..|.
T Consensus 4 li~eG~L~K~~rk-----~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~------~~v~~~~d---~~~~~n~f~ 69 (104)
T cd01218 4 LVGEGVLTKMCRK-----KPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEG------VQVESIED---DGIERNGWI 69 (104)
T ss_pred EEecCcEEEeecC-----CCceEEEEEecCEEEEEEeecCCceeeEeeEEEccc------eEEEecCC---cccccceEE
Confidence 3467777665522 235689999888885533322221 12344443 34433211 112335577
Q ss_pred EeecCCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004240 122 LYNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (766)
Q Consensus 122 ~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~~~~ 156 (766)
|.++ .+-..+.|.|++|-..|+++|++||++.
T Consensus 70 I~~~---~kSf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 70 IKTP---TKSFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred EecC---CeEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 7765 5688999999999999999999999953
No 88
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.22 E-value=0.95 Score=43.20 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=62.7
Q ss_pred ceeeeEEEecceeeeeccCCCC--CCCCCcceeeeecCceeEeeccceeee---CceEEEEEEeecCCcCcceeeeccCH
Q 004240 65 CHLRFLFIRGKYVEMYKRDPHE--NPGIKPIRRGVIGPTLMVEELGRRRFN---HGDVYVMRLYNRLDESKKGEIACATA 139 (766)
Q Consensus 65 ~~~ry~vl~~~~~~~yk~~p~~--~~~~~pir~~~i~~~~rv~d~g~~~~~---~~~~yv~~~yn~~~~~~~~~~aa~~~ 139 (766)
.+.||.+|=.+.+=.=|+.-.. . .+--.|..+.-..++|+++...-.- ++--|.|-|=.+ +....++|.|-|.
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~-~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Kte 97 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGD-MQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKTE 97 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCC-ccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCCH
Confidence 5689999999988888865321 1 2355677787788888887422222 234455555544 3346699999999
Q ss_pred HHHHHHHHHHHHHHH
Q 004240 140 GEARKWMEAFDQAKQ 154 (766)
Q Consensus 140 eea~~W~~~~~~~~~ 154 (766)
||-.+||++|+.|+.
T Consensus 98 e~K~kWm~al~~a~s 112 (116)
T cd01223 98 HLRKKWLKALEMAMS 112 (116)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999976
No 89
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.88 E-value=5.3 Score=38.17 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=31.9
Q ss_pred EEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEE
Q 004240 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 300 (766)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE 300 (766)
-....|++||++||++|.|.+. -++|.+.+.++++++
T Consensus 4 ~~~~~i~ap~e~Vw~~~tD~~~--~~~w~~~v~~~~~~~ 40 (146)
T cd07824 4 HTVWRIPAPPEAVWDVLVDAES--WPDWWPGVERVVELE 40 (146)
T ss_pred eEEEEecCCHHHHHHHHhChhh--cchhhhceEEEEEcc
Confidence 3456799999999999999976 789999888888876
No 90
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.25 E-value=12 Score=35.38 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=31.6
Q ss_pred EEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEE
Q 004240 260 LVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 300 (766)
Q Consensus 260 ~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE 300 (766)
.+....+|++|+++||++|.|... -++|++.+...+.++
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~--~~~W~p~~~~~~~~~ 41 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKN--WPEWSPWEKLDPDMK 41 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCccc--CcccCchhhcCcceE
Confidence 356778899999999999999976 788999777655543
No 91
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.76 E-value=0.44 Score=44.66 Aligned_cols=94 Identities=17% Similarity=0.280 Sum_probs=60.3
Q ss_pred eeeEEEEEcccccccccceeeeEEEecce-----eeeeccCCCCCCCCCcceeeeecCcee-----Eee---ccceeeeC
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKY-----VEMYKRDPHENPGIKPIRRGVIGPTLM-----VEE---LGRRRFNH 114 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~~~~-----~~~yk~~p~~~~~~~pir~~~i~~~~r-----v~d---~g~~~~~~ 114 (766)
++||||..|.+.+= .+ ++|||||.+-- +..|+.+-.+. . -.+.+|+.+. ... -|++.- |
T Consensus 4 ~sGyL~k~Gg~~~K-kW-KKRwFvL~qvsQYtfamcsy~ekks~P-~----e~~qldGyTvDy~~~~~~~~~~~~~~~-g 75 (117)
T cd01234 4 HCGYLYAIGKNVWK-KW-KKRFFVLVQVSQYTFAMCSYREKKAEP-T----EFIQLDGYTVDYMPESDPDPNSELSLQ-G 75 (117)
T ss_pred eeEEEEeccchhhh-hh-heeEEEEEchhHHHHHHHhhhhhcCCc-h----hheeecceEEeccCCCCCCcccccccc-c
Confidence 89999998876653 34 89999999532 33455443322 1 1333343321 111 122222 4
Q ss_pred ceEEEEEEeecCCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004240 115 GDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (766)
Q Consensus 115 ~~~yv~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~ 153 (766)
+.+| +|..-+.+.+.||+.+-.|---|+.|+-.|-
T Consensus 76 g~~f----f~avkegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 76 GRHF----FNAVKEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred chhh----hheeccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 4333 5778889999999999999999999998773
No 92
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.89 E-value=4.1 Score=39.45 Aligned_cols=95 Identities=14% Similarity=0.230 Sum_probs=64.4
Q ss_pred eeeEEEEEcccccc-----cccceeeeEEEecceeeeeccCCCCCCCCCcceeeee-----cCceeEeeccceee-----
Q 004240 48 YFGWVYHMGTNSIG-----HEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVI-----GPTLMVEELGRRRF----- 112 (766)
Q Consensus 48 ~egw~~~~~~~~~g-----~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i-----~~~~rv~d~g~~~~----- 112 (766)
..|++..+.-++.. +.-.+.|||+|=+.+|=|=|++..+ +-.| -..+.|++..-...
T Consensus 5 K~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~--------~f~V~dy~~r~~l~V~~~e~~~~~~~~~ 76 (125)
T cd01221 5 KRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS--------TFVVFDYAPRSFLRVEKIEPDNQKIPLG 76 (125)
T ss_pred EEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC--------eEEEEeeccccceEEeeccccccccccc
Confidence 46777777654332 2224679999999999888877532 2333 34556665433322
Q ss_pred ----eCceEEEEEE-eecCCcCcceeeeccCHHHHHHHHHHHH
Q 004240 113 ----NHGDVYVMRL-YNRLDESKKGEIACATAGEARKWMEAFD 150 (766)
Q Consensus 113 ----~~~~~yv~~~-yn~~~~~~~~~~aa~~~eea~~W~~~~~ 150 (766)
...-+|.+++ -|...+...+.|-|.|.+|-.+||+||.
T Consensus 77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 3455666664 4556778889999999999999999984
No 93
>PF15408 PH_7: Pleckstrin homology domain
Probab=88.38 E-value=0.33 Score=43.90 Aligned_cols=92 Identities=16% Similarity=0.300 Sum_probs=61.9
Q ss_pred eeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeee--CceEEEEEEeecC
Q 004240 49 FGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFN--HGDVYVMRLYNRL 126 (766)
Q Consensus 49 egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~--~~~~yv~~~yn~~ 126 (766)
||.+|+.....| ++||.||.|+++-||-.|....-..--+|+-++.. -+| +|-+... |=+-|-|-.|..
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s~-Pm~--~~~~A~~N~Gi~A~G~L~~~~- 71 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVSH-PMV--NFSQAVPNLGINAFGFLMYSP- 71 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhhhc-ccc--cccccCCCCCeeEEEEEEecC-
Confidence 799999887776 78999999999999988874432333444444322 223 2444433 333444555544
Q ss_pred CcCcceeeeccCHHHHHHHHHHHH
Q 004240 127 DESKKGEIACATAGEARKWMEAFD 150 (766)
Q Consensus 127 ~~~~~~~~aa~~~eea~~W~~~~~ 150 (766)
...++++=|.|.|--.+|+.++.
T Consensus 72 -~~~~~~~FA~S~~~~~~Wi~~mN 94 (104)
T PF15408_consen 72 -SRRHVQCFASSKKVCQSWIQVMN 94 (104)
T ss_pred -CcchhhhhhhHHHHHHHHHHHhc
Confidence 45778888999999999998774
No 94
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=88.37 E-value=20 Score=32.78 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=28.6
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEE
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLEL 298 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eV 298 (766)
+..+..|++|+++||+.|.|... ...|.+.+...+.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~--~~~w~~~~~~~~~ 37 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPS--YPEWNPFVRSATG 37 (141)
T ss_pred eEEEEEecCCHHHHHHHHhcccc--ccccChhheeEec
Confidence 45677899999999999999876 7889876654443
No 95
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.02 E-value=3.4 Score=39.22 Aligned_cols=100 Identities=13% Similarity=0.168 Sum_probs=61.7
Q ss_pred eeeeEEEEEcccccccccceeeeEEEecceeeeeccCCC--CCCC----CCcceeeeecCceeEeeccceeeeCceEEEE
Q 004240 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPH--ENPG----IKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (766)
Q Consensus 47 ~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~--~~~~----~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~ 120 (766)
.+||=+-.+.+.+ .=.+.|||+|=+..|=|=|++.. +.|+ .-=+|.-+-=..+.|.|..= +..+-+-|
T Consensus 5 I~EG~L~ki~~~~---~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~knaF 78 (112)
T cd01261 5 IMEGTLTRVGPSK---KAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKNAF 78 (112)
T ss_pred cccCcEEEEeccc---CCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCceE
Confidence 4788887776543 22468999999999988786553 1111 11222222223334433211 11123456
Q ss_pred EEeecCCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004240 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 121 ~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~~ 154 (766)
.|.++. .+-..+-|.|+||-..||++|..++.
T Consensus 79 ~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 79 EIILKD--GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 666653 34689999999999999999999875
No 96
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=86.81 E-value=1.6 Score=50.16 Aligned_cols=99 Identities=17% Similarity=0.333 Sum_probs=62.9
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEecceeeee-ccCCCCCCCC--CcceeeeecCceeEeeccceeeeCceEEEE
Q 004240 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMY-KRDPHENPGI--KPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (766)
Q Consensus 44 ~~~~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~y-k~~p~~~~~~--~pir~~~i~~~~rv~d~g~~~~~~~~~yv~ 120 (766)
+...++||++.++... . .++|||.|.+..+.+. +..|... +. .++...-|...|=|... ...++ =++|
T Consensus 375 sDv~~~G~l~k~~~~~---~-wk~ry~~l~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~v~pv~~~--~~~~~--~~~~ 445 (478)
T PTZ00267 375 SDVTHGGYLYKYSSDM---R-WKKRYFYIGNGQLRISLSENPEND-GVAPKSVNLETVNDVFPVPEV--YSQKH--PNQL 445 (478)
T ss_pred CCcccceEEeccCCCc---c-hhhheEEecCCceEEEeccccccC-CCCCccccHHHhcccccccHH--hcCCC--CceE
Confidence 4567999999987643 3 4899999998777765 4455432 22 33332225555544100 01111 2445
Q ss_pred EEeecCCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004240 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (766)
Q Consensus 121 ~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~ 153 (766)
.|.++- ..++=+-|.|.+|-..||++|+.|+
T Consensus 446 ~i~~~~--~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 446 VLWFNN--GQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEEecC--CcEEEEecCChHHHHHHHHHHHHHh
Confidence 555554 4478788899999999999999884
No 97
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.32 E-value=9.4 Score=36.82 Aligned_cols=106 Identities=12% Similarity=0.149 Sum_probs=72.0
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCC--CCCCCcceeeee-cCceeEeecc---c-eeeeCceEE
Q 004240 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHE--NPGIKPIRRGVI-GPTLMVEELG---R-RRFNHGDVY 118 (766)
Q Consensus 46 ~~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~--~~~~~pir~~~i-~~~~rv~d~g---~-~~~~~~~~y 118 (766)
..|||||=.=..+++.+.+ .++|.|+.+.-+..|-..+.. .|...|.-.+-+ |+-..|.-.. . ..-....=|
T Consensus 2 t~~EGwvkvP~~~~~krGW-~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKGW-QRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred ccceeeEeccCCCCcccCc-eEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 3699999876666777777 788999999999999865532 344566655666 6666664211 1 111222338
Q ss_pred EEEEeecC----CcCcceeeeccCHHHHHHHHHHHHHH
Q 004240 119 VMRLYNRL----DESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 119 v~~~yn~~----~~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
||+|=-.- -....+-|=|.|-.|-.+|..++++.
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 88875422 22355667889999999999999876
No 98
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=86.23 E-value=5.9 Score=36.63 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=64.6
Q ss_pred eeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecC
Q 004240 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (766)
Q Consensus 47 ~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~ 126 (766)
.+||=+...+. .+.||++|=.+.+=+=|+.. + .-=.|+-+.=.+.+|+|+=- |. -.-|.|....
T Consensus 5 lleg~l~~~~~-------~~eR~vFLFe~~ll~~K~~~--~--~y~~K~~i~~~~l~i~e~~~----~d-~~~F~v~~~~ 68 (97)
T cd01222 5 LLEGRFREHGG-------GKPRLLFLFQTMLLIAKPRG--D--KYQFKAYIPCKNLMLVEHLP----GE-PLCFRVIPFD 68 (97)
T ss_pred eeeceEEeecC-------CCceEEEEecccEEEEEecC--C--eeEEEEEEEecceEEecCCC----CC-CcEEEEEecC
Confidence 45666654333 45699999888887777544 2 45677777777888876421 11 2455555554
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004240 127 DESKKGEIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 127 ~~~~~~~~aa~~~eea~~W~~~~~~~~~ 154 (766)
....++.+-|.|.|+-..|+++|+.|+.
T Consensus 69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 69 DPKGALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred CCceEEEEEecCHHHHHHHHHHHHHHhh
Confidence 4446999999999999999999999975
No 99
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.18 E-value=2.9 Score=39.74 Aligned_cols=105 Identities=13% Similarity=0.158 Sum_probs=69.0
Q ss_pred eeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE-eec
Q 004240 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL-YNR 125 (766)
Q Consensus 47 ~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~-yn~ 125 (766)
+.|||+|. ..-|..==.+|||||+..=|.|+-+.-..+|+..--=...=+.|+-..-.|++.+..-.=|-|+| -|+
T Consensus 1 e~~g~Lyl---K~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~ 77 (114)
T cd01259 1 EMEGPLYL---KADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVG 77 (114)
T ss_pred CccceEEE---ccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccc
Confidence 36899998 23355445999999999999776544333432111112233556666667888888888888888 333
Q ss_pred CCc--Ccceee-eccCHHHHHHHHHHHHHHHH
Q 004240 126 LDE--SKKGEI-ACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 126 ~~~--~~~~~~-aa~~~eea~~W~~~~~~~~~ 154 (766)
... ++-|++ -|.+.+.-..|+.||+-|+-
T Consensus 78 ~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~Ky 109 (114)
T cd01259 78 DQSKGSQSIKYLCAEDLPTLDRWLTAIRIAKY 109 (114)
T ss_pred cCcccchhheeeccCCHHHHHHHHHHHHHHhh
Confidence 222 466655 45566666789999998854
No 100
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=83.64 E-value=0.96 Score=55.73 Aligned_cols=96 Identities=14% Similarity=0.279 Sum_probs=66.8
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEec--ceeeeeccCCCCCCCCCcceeeeecCc--eeEeeccceeeeCceEEE
Q 004240 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRG--KYVEMYKRDPHENPGIKPIRRGVIGPT--LMVEELGRRRFNHGDVYV 119 (766)
Q Consensus 44 ~~~~~egw~~~~~~~~~g~~~~~~ry~vl~~--~~~~~yk~~p~~~~~~~pir~~~i~~~--~rv~d~g~~~~~~~~~yv 119 (766)
....+||.+|.-|. +-.-| ..|||||.. ..|+||..--...| +|+||-- --|+-.|-|++-.+-||=
T Consensus 1632 eNr~~eG~LyKrGA--~lK~W-k~RwFVLd~~khqlrYYd~~edt~p------kG~IdLaevesv~~~~~k~vdekgffd 1702 (1732)
T KOG1090|consen 1632 ENRIPEGYLYKRGA--KLKLW-KPRWFVLDPDKHQLRYYDDFEDTKP------KGCIDLAEVESVALIGPKTVDEKGFFD 1702 (1732)
T ss_pred cccCcccchhhcch--hhccc-ccceeEecCCccceeeecccccccc------cchhhhhhhhhhcccCccccCccceee
Confidence 34448999998543 44444 899999975 68899975543332 4555521 123346778888888876
Q ss_pred EEEeecCCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004240 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (766)
Q Consensus 120 ~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~ 153 (766)
+.. .++-..|-|.|+-+|..|+++|+.|+
T Consensus 1703 lkt-----t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1703 LKT-----TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred eeh-----hhHHHHHHhccchHHHHHHHHHHHhh
Confidence 643 33445688999999999999999985
No 101
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=82.51 E-value=2.5 Score=50.82 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=73.1
Q ss_pred CCCcceeeeEEEEE--cccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEE
Q 004240 42 EKGYFEYFGWVYHM--GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYV 119 (766)
Q Consensus 42 ~~~~~~~egw~~~~--~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv 119 (766)
.+..+--||-|++. |+-++|...+.||||-|-+.-|.|-| .|... |+-+..+-.=.-||..--+++.++-+|-
T Consensus 561 ~~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~K-sp~~q----~~~~Ipl~nI~avEklee~sF~~knv~q 635 (800)
T KOG2059|consen 561 QEPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAK-SPGKQ----PIYTIPLSNIRAVEKLEEKSFKMKNVFQ 635 (800)
T ss_pred CCCceecccceEeccccccchhhhhhhheEEEeccceeEEec-CCccC----cccceeHHHHHHHHHhhhhccCCCceEE
Confidence 33455589999987 66789977779999999999998877 44433 4444444333335555556676665443
Q ss_pred EEEeecCCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004240 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 120 ~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~~ 154 (766)
. ||+. +.+-+-|.|.-||..|..+++.+..
T Consensus 636 V-V~~d----rtly~Q~~n~vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 636 V-VHTD----RTLYVQAKNCVEANDWLDALRKVSC 665 (800)
T ss_pred E-EecC----cceeEecCCchHHHHHHHHHHHHhc
Confidence 2 4554 4888889999999999999987755
No 102
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=80.45 E-value=14 Score=35.23 Aligned_cols=94 Identities=10% Similarity=0.299 Sum_probs=61.9
Q ss_pred eeeeEEEEEccccc--ccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeee-Cc--------
Q 004240 47 EYFGWVYHMGTNSI--GHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFN-HG-------- 115 (766)
Q Consensus 47 ~~egw~~~~~~~~~--g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~-~~-------- 115 (766)
.|||||=.=..+.. ...+ .++|.|+.+.-+..|-...... ..-| +.++| . ++.+| +.
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW-~r~yvVv~~~Kl~lYd~e~~~~-~~~p--~~vld-------l-~~~fhv~~V~asDVi~ 68 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGW-KKQYVVVSSRKILFYNDEQDKE-NSTP--SMILD-------I-DKLFHVRPVTQGDVYR 68 (112)
T ss_pred CcceeEEccCCCCccccCCc-eEEEEEEeCCEEEEEecCcccc-CCCc--EEEEE-------c-cceeeeecccHHHeee
Confidence 48999976444344 2345 6789999999999998544332 1223 23343 2 22555 22
Q ss_pred -----eEEEEEEeecCCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004240 116 -----DVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (766)
Q Consensus 116 -----~~yv~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~ 153 (766)
.=|||+|=-. +++..+-|=|.|-+|-.+|..++..-|
T Consensus 69 a~~kDiP~IF~I~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 69 ADAKEIPKIFQILYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred cCcccCCeEEEEEeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 2378887553 446778888999999999999987544
No 103
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=80.35 E-value=52 Score=31.54 Aligned_cols=111 Identities=12% Similarity=-0.054 Sum_probs=64.5
Q ss_pred EEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCeEEE
Q 004240 264 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTI 343 (766)
Q Consensus 264 ~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGsYVI 343 (766)
...|++++++||+.|.|+ ..|=.++-.++.++.++++... -...+ . ++++.+=-..++.....+...+.+
T Consensus 2 s~~v~a~~~~vw~~l~D~-----~~l~~ciPG~~~~e~~~~~~~~-~~~v~--v--G~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDP-----ENLARCIPGVESIEKVGDEYKG-KVKVK--V--GPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEECS-HHHHHHHHT-H-----HHHHHHSTTEEEEEEECTEEEE-EEEEE--S--CCCEEEEEEEEEEEEEETTTEEEE
T ss_pred cEEecCCHHHHHHHhcCH-----HHHHhhCCCcEEeeecCcEEEE-EEEEE--e--ccEEEEEEEEEEEEEcCCCcceEe
Confidence 457899999999999986 3688899999999999944332 22223 1 234443334444444445545543
Q ss_pred EEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004240 344 LQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (766)
Q Consensus 344 a~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi 399 (766)
-..--.. .+...+.... .+...+. .. |.|+|-..++..|.+
T Consensus 72 ~~~g~g~------~~~~~~~~~~---~~~~~~~-----~~-T~v~~~~~~~~~G~l 112 (140)
T PF06240_consen 72 EFEGRGR------GGGSSASANI---TLSLEDD-----GG-TRVTWSADVEVGGPL 112 (140)
T ss_dssp EEEEEEC------TCCEEEEEEE---EEEECCC-----TC-EEEEEEEEEEEECHH
T ss_pred eeeccCC------ccceEEEEEE---EEEcCCC-----CC-cEEEEEEEEEEccCH
Confidence 3332211 1223333221 1233222 24 999999999999999
No 104
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=78.48 E-value=68 Score=31.16 Aligned_cols=119 Identities=12% Similarity=0.035 Sum_probs=71.6
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEccCCe
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~dGs 340 (766)
+..+..|++|++++|+++.+....-...|-+.+.++++++-=++.-.|-...+.+. . +++ .+.-|--. .++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~----~-~~~-~~kE~l~~-~D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPG----G-KVK-YVKERIDA-VDEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCC----C-cce-EEEEEEEE-Ecccc
Confidence 56778899999999999999862024578888899988864233334555444331 1 111 12112111 23435
Q ss_pred EEEEEeeccCCCCC-CCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCc
Q 004240 341 YTILQFPAVHKKRP-PKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGW 398 (766)
Q Consensus 341 YVIa~~SV~Hp~~P-p~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGw 398 (766)
..+.++-++-+-.. +- ....+-+-+.|.+. ++|.++|.+..++..-
T Consensus 76 ~~~~y~vveg~~~~~~~------~~y~~t~~v~~~~~------~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDVLKDGY------KSYKVEIKFVPKGD------GGCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEecccccCce------EEEEEEEEEEECCC------CCEEEEEEEEEEECCC
Confidence 66666555433211 11 23456677788643 5899999999997654
No 105
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=76.91 E-value=6.2 Score=36.98 Aligned_cols=89 Identities=20% Similarity=0.294 Sum_probs=52.2
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEecc-eeeeeccCCCCC--CCCCcceeeeecCceeEeeccceeeeCceEEEE
Q 004240 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGK-YVEMYKRDPHEN--PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (766)
Q Consensus 44 ~~~~~egw~~~~~~~~~g~~~~~~ry~vl~~~-~~~~yk~~p~~~--~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~ 120 (766)
....++|-+..- =|. |.++|-|+|.+. .|-|+. |... .+++| +...++|+ ..+.+.|+|-
T Consensus 11 e~Il~~g~v~K~----kgl-~~kkR~liLTd~PrL~Yvd--p~~~~~KGeI~-----~~~~l~v~-----~k~~~~F~I~ 73 (104)
T PF14593_consen 11 ELILKQGYVKKR----KGL-FAKKRQLILTDGPRLFYVD--PKKMVLKGEIP-----WSKELSVE-----VKSFKTFFIH 73 (104)
T ss_dssp --EEEEEEEEEE----ETT-EEEEEEEEEETTTEEEEEE--TTTTEEEEEE-------STT-EEE-----ECSSSEEEEE
T ss_pred CeEEEEEEEEEe----ece-EEEEEEEEEccCCEEEEEE--CCCCeECcEEe-----cCCceEEE-----EccCCEEEEE
Confidence 455689988873 233 379999999988 666664 4332 13333 34677887 5555555543
Q ss_pred EEeecCCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004240 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (766)
Q Consensus 121 ~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~~~~ 156 (766)
+= .+..-|-. ....|..|.++|+++..|+
T Consensus 74 tp------~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 74 TP------KRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp ET------TEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred CC------CcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 21 22223322 4556999999999998753
No 106
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=76.70 E-value=65 Score=30.03 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=25.5
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCC
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~ 292 (766)
+..+..|+|||++||++|.|... .++|++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~~--~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPRR--HPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCccc--cceeCCC
Confidence 34567899999999999999976 8899864
No 107
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.63 E-value=10 Score=36.07 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=57.7
Q ss_pred cccceeeeEEEecceeeeeccCCCCC----CCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecCCcCcceeeecc
Q 004240 62 HEYCHLRFLFIRGKYVEMYKRDPHEN----PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACA 137 (766)
Q Consensus 62 ~~~~~~ry~vl~~~~~~~yk~~p~~~----~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~aa~ 137 (766)
-+=.+.|||||=...|-+....|... -+..|++.+.|-.=...+ +.-+.|.|--+. -++|.+-|.
T Consensus 25 ~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e---------~~~~aFeI~G~l--i~~i~v~C~ 93 (111)
T cd01225 25 GEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTE---------ALKNAFEISGPL--IERIVVVCN 93 (111)
T ss_pred ccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhcc---------CccceEEEeccC--cCcEEEEeC
Confidence 34468999999999999999999553 157899888876422222 113445554333 367889999
Q ss_pred CHHHHHHHHHHHHH
Q 004240 138 TAGEARKWMEAFDQ 151 (766)
Q Consensus 138 ~~eea~~W~~~~~~ 151 (766)
|.+|...|++-++.
T Consensus 94 ~~~e~~~Wl~hL~~ 107 (111)
T cd01225 94 NPQDAQEWVELLNA 107 (111)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998875
No 108
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=72.41 E-value=31 Score=32.54 Aligned_cols=95 Identities=11% Similarity=0.147 Sum_probs=55.2
Q ss_pred eeeEEEEEcccccccccceeeeEEEe--cceeeeeccCCCC-C--CC--CCcceeeeecCceeEeeccceeeeCceEEEE
Q 004240 48 YFGWVYHMGTNSIGHEYCHLRFLFIR--GKYVEMYKRDPHE-N--PG--IKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (766)
Q Consensus 48 ~egw~~~~~~~~~g~~~~~~ry~vl~--~~~~~~yk~~p~~-~--~~--~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~ 120 (766)
++||||.-..+++|-++. +.|+..+ ++.+.|---.|.+ + ++ ..+.+-+ ++.|++=. +-.-.-=|-|
T Consensus 1 k~GYLy~~~k~~~~~~Wv-k~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~-l~sc~~r~-----~~~~dRRFCF 73 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWT-KYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLT-LKSCSRRK-----TESIDKRFCF 73 (104)
T ss_pred CCceEEEEcCCCCCCeEE-EEEEEEEcCCcEEEEEecccccccccCcccccceEEe-eeeccccc-----cCCccceeeE
Confidence 589999999889988886 4444433 3455443333332 0 01 1122211 22222211 1111233667
Q ss_pred EEeecCCcCcceeeeccCHHHHHHHHHHHH
Q 004240 121 RLYNRLDESKKGEIACATAGEARKWMEAFD 150 (766)
Q Consensus 121 ~~yn~~~~~~~~~~aa~~~eea~~W~~~~~ 150 (766)
.|-.+.-+ ..++|=|.|-.|-..||+|+.
T Consensus 74 ei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 74 DVEVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 77655554 569999999999999999985
No 109
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=65.70 E-value=43 Score=31.88 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=59.8
Q ss_pred ccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecCCc--CcceeeeccCHH
Q 004240 63 EYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDE--SKKGEIACATAG 140 (766)
Q Consensus 63 ~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~~~--~~~~~~aa~~~e 140 (766)
.=.+.|.++|=...|=+=|..........| +-+.-..+.+.+.|.+-+-++.=.=|.|+.+... .+...+=|.|+|
T Consensus 22 ~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~--~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e 99 (114)
T cd01232 22 QKGRERRVFLFEQSIIFAKEVKKKKQFGNP--KYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQE 99 (114)
T ss_pred CCCceeEEEEeeceEEEEEEeccCCCCCce--eEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHH
Confidence 345678888877777555543221100122 2333455666777776666555666777777664 578899999999
Q ss_pred HHHHHHHHHHHHHH
Q 004240 141 EARKWMEAFDQAKQ 154 (766)
Q Consensus 141 ea~~W~~~~~~~~~ 154 (766)
+-..|+..|.++.+
T Consensus 100 ~K~~W~~~I~~il~ 113 (114)
T cd01232 100 TKQEWVKKIREILQ 113 (114)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999876
No 110
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=65.59 E-value=4.7 Score=47.50 Aligned_cols=38 Identities=11% Similarity=0.318 Sum_probs=25.0
Q ss_pred CCCCcceeeeEEEEEcccccccccceeeeEEEecceeeeec
Q 004240 41 KEKGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYK 81 (766)
Q Consensus 41 ~~~~~~~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk 81 (766)
+..++...||||+||-..- .--.+-|.-|..|++.+|.
T Consensus 408 Rksst~~kEGWmvHyt~~d---~lRkrHYWrldsk~itlfq 445 (888)
T KOG4236|consen 408 RKSSTKLKEGWMVHYTSKD---NLRKRHYWRLDSKCITLFQ 445 (888)
T ss_pred ccchhhhhcceEEEEechh---hhhhhhhheeccceeEeee
Confidence 3445666999999996543 2223447888888876543
No 111
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=64.49 E-value=1.3e+02 Score=28.33 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=32.8
Q ss_pred EEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEee
Q 004240 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY 302 (766)
Q Consensus 263 a~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~l 302 (766)
.+..|++|+++||+.+.|... -..|.+.+.+++++..-
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~--~~~~~p~~~~v~~~~~~ 40 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDN--LERLTPPWLEFAVLGRT 40 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcch--HHhcCCCCCCeEEEecC
Confidence 456799999999999999977 78999999999988643
No 112
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.94 E-value=18 Score=45.04 Aligned_cols=115 Identities=17% Similarity=0.326 Sum_probs=85.7
Q ss_pred ccCCCCCcceeeeEEEEEcc-cccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCcee--EeeccceeeeC
Q 004240 38 VGDKEKGYFEYFGWVYHMGT-NSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLM--VEELGRRRFNH 114 (766)
Q Consensus 38 ~~~~~~~~~~~egw~~~~~~-~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~r--v~d~g~~~~~~ 114 (766)
+....+..++|-|.+|.+.- ..+|- | |.|+-+|.|....|+| .|.|..+.+||-.+=.-.||+ ||.--|++--.
T Consensus 982 C~~~~~idVEYrGFLtmfed~sgfGa-W-hRyWc~L~gg~I~fWk-~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar 1058 (1116)
T KOG3640|consen 982 CSLPDAIDVEYRGFLTMFEDGSGFGA-W-HRYWCALHGGEIKFWK-YPDDEKRKVPIGQIDLTKCTSQSIEEARRDICAR 1058 (1116)
T ss_pred cccccccceeeeeeeeeeeccCCCch-h-hhhhHHhcCCeeeeec-CcchhcccCcceeeehhhhhccccccchhhhccC
Confidence 55566678889999998863 34554 4 9999999999999998 788877889997777777775 55554444444
Q ss_pred ceEEEEEEeecCCcC---------cceeeeccCHHHHHHHHHHHHHHHHH
Q 004240 115 GDVYVMRLYNRLDES---------KKGEIACATAGEARKWMEAFDQAKQQ 155 (766)
Q Consensus 115 ~~~yv~~~yn~~~~~---------~~~~~aa~~~eea~~W~~~~~~~~~~ 155 (766)
.-=|-+-++-++... -+.-|||.+.||-.-|+.+|-++..+
T Consensus 1059 ~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1059 PNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred CceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 444555555554322 26789999999999999999998773
No 113
>PLN02866 phospholipase D
Probab=61.98 E-value=27 Score=44.43 Aligned_cols=80 Identities=11% Similarity=0.291 Sum_probs=54.2
Q ss_pred eeeeEEEecceeeeeccCCCCCCCCCcceeeeecC----------ceeEeeccceeeeCceEEEEEEeecCCcCcceeee
Q 004240 66 HLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGP----------TLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIA 135 (766)
Q Consensus 66 ~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~----------~~rv~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~a 135 (766)
.||||||+..+|.|.+ +|.+. .|.-=.++|. ...+....-++ ...=|-|+|=| -+++++|=
T Consensus 219 ~k~w~v~k~~~l~~~~-~p~~~---~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~ 289 (1068)
T PLN02866 219 QKVWAVLKPGFLALLE-DPFDA---KPLDIIVFDVLPASNGNGEGQISLAKEIKER--NPLRFGFKVTC---GNRSIRLR 289 (1068)
T ss_pred heeEEEEeccEEEEEe-cCCCC---ceeEEEEEecccccccCCCcceeeccccccc--CCCcceEEEec---CceEEEEE
Confidence 5799999999998865 56544 3666677773 22332222111 11233455533 36679999
Q ss_pred ccCHHHHHHHHHHHHHHHH
Q 004240 136 CATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 136 a~~~eea~~W~~~~~~~~~ 154 (766)
|.|..+|..|+.+|+++..
T Consensus 290 ~~s~~~~~~w~~ai~~~~~ 308 (1068)
T PLN02866 290 TKSSAKVKDWVAAINDAGL 308 (1068)
T ss_pred ECCHHHHHHHHHHHHHHHh
Confidence 9999999999999999976
No 114
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=59.59 E-value=1e+02 Score=30.77 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=72.2
Q ss_pred eEEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCc----eEEEEEEeccCcCCCCCCCCeEEEEEEEE
Q 004240 259 VLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH----YDVVYGTYDPKYLTRWQSKRDFVFSRQWF 334 (766)
Q Consensus 259 ~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~----tDIvY~~~kp~~lP~~vspRDFV~LRswR 334 (766)
+.+.....|..+|+++|+++.|... -++.=+.+...+|+++=..+ .+|.|..++ .--.-|-..
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~~--YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~-----------e~F~Trv~~ 68 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVES--YPEFLPWCSASRVLERNERELIAELDVGFKGIR-----------ETFTTRVTL 68 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHHh--CchhccccccceEeccCcceeEEEEEEEhhhee-----------eeeeeeeee
Confidence 3566778899999999999999865 77888888888888874332 233332211 111111111
Q ss_pred EccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004240 335 RGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (766)
Q Consensus 335 r~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi 399 (766)
. .+.-+|....+.-|= +-+-++|-+.|+.. ..|+|...+.-+.+..+
T Consensus 69 ~--~~~~~I~~~l~~GPF----------k~L~~~W~F~pl~~------~~ckV~f~ldfeF~s~l 115 (146)
T COG2867 69 K--PTARSIDMKLIDGPF----------KYLKGGWQFTPLSE------DACKVEFFLDFEFKSRL 115 (146)
T ss_pred c--CchhhhhhhhhcCCh----------hhhcCceEEEECCC------CceEEEEEEEeeehhHH
Confidence 1 122245544444332 13678999999975 68999999999999888
No 115
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=55.64 E-value=1.6e+02 Score=26.78 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=24.8
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCC
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~ 292 (766)
+....+|++|+++||++|.|... -+.|.+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~--~~~w~~~ 31 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPEL--LAQWFGP 31 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHH--HHhhhCc
Confidence 45667899999999999999865 6788775
No 116
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=50.53 E-value=3.3e+02 Score=28.77 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=78.5
Q ss_pred eEEEEEEeecCC--HHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEc
Q 004240 259 VLVKAVGVIDAS--ADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG 336 (766)
Q Consensus 259 ~~~Ka~gvVdas--pe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~ 336 (766)
.+-|....|.-| =.+|...|+|++. -...|..+..++++...+++.-++++..+.. .+-..|=|-.|..--..
T Consensus 59 dI~K~~~~I~~pnkYneIIN~LWdpn~--~~~fn~~~ikgki~RvYnpNLvmiqqry~~~---~~~~~~YfyaLa~Kv~i 133 (208)
T TIGR01599 59 IIGKIHLTIQDPNKYDAIIKTLWDFND--NKKFGRKFIKGKVVRVYSPNLIMIQQRYKDA---SGSPNKYFYALATKVKV 133 (208)
T ss_pred EEEEEEEEecCchhHHHHHHHHhcccc--ccCCCchheeeeEEEEeCCCeEEEEeecCCC---CCCcceEEeEeeeeeec
Confidence 466777777553 4789999999876 5678999999999999999999999887753 23344556555554444
Q ss_pred cCCeEEEEEeeccCCCCCC--CCC--------------------------eEeEEEcceeEEEEecCC
Q 004240 337 QDGTYTILQFPAVHKKRPP--KSG--------------------------YRRTKINPSTWEIRSLNL 376 (766)
Q Consensus 337 ~dGsYVIa~~SV~Hp~~Pp--~~G--------------------------yVRAei~~sGylI~P~~~ 376 (766)
..++-+|+..|..--++-+ .+. .-.-.+.++||+|+.-.+
T Consensus 134 Sed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d 201 (208)
T TIGR01599 134 SEDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD 201 (208)
T ss_pred CCCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC
Confidence 5567888888876443322 111 223367889999988553
No 117
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=49.02 E-value=2e+02 Score=29.98 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=83.5
Q ss_pred EEEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEE----
Q 004240 260 LVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFR---- 335 (766)
Q Consensus 260 ~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr---- 335 (766)
.......|+.|+++||.+-.|++. .+.|-+++.+.+|+ |++- -+++.+. | .-.-..|.-
T Consensus 71 ~v~~~V~I~kPae~vy~~W~dLe~--lP~~Mkhl~SVkVl---ddkr--SrW~~~a---p-------~g~~v~Wea~it~ 133 (217)
T COG5637 71 EVEVQVTIDKPAEQVYAYWRDLEN--LPLWMKHLDSVKVL---DDKR--SRWKANA---P-------LGLEVEWEAEITK 133 (217)
T ss_pred EEEEEEEeCChHHHHHHHHHhhhh--hhHHHHhhceeecc---CCCc--cceeEcC---C-------CCceEEEeehhhc
Confidence 345556799999999999999987 99999987776664 4442 2333332 2 112224543
Q ss_pred ccCCeEEEEEeeccCCCCCCCCCeEeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCCcccchhhhHH
Q 004240 336 GQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHF 415 (766)
Q Consensus 336 ~~dGsYVIa~~SV~Hp~~Pp~~GyVRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwi~w~p~~~s~~~~~i~~ 415 (766)
+..| =.|.-.|+.-...|-+ |.|| .++.+. .+|.|...+...+-||..= ...+++..--+-
T Consensus 134 d~~~-e~I~W~Sl~Ga~v~Ns-G~Vr---------F~~~pg------~~t~V~v~lsY~~Pgg~~~--a~va~~fgeepe 194 (217)
T COG5637 134 DIPG-ERIQWESLPGARVENS-GAVR---------FYDAPG------DSTEVKVTLSYRPPGGLLG--AVVAKLFGEEPE 194 (217)
T ss_pred cCCC-cEEeeecCCCCcCCCC-ccEE---------eeeCCC------CceEEEEEEEecCCccHHH--HHHHHHhccchH
Confidence 2233 4677888877666544 7776 334443 3578888888888888710 112334333333
Q ss_pred HH-HHHHHHHHHHhhc
Q 004240 416 AL-LSQVAGLKEYIGA 430 (766)
Q Consensus 416 ~m-L~~Va~LRe~~~a 430 (766)
+. -.-+..+|+++..
T Consensus 195 qqI~~DL~RFk~~~e~ 210 (217)
T COG5637 195 QQIQDDLERFKEYQEN 210 (217)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 32 3677888888876
No 118
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=43.93 E-value=81 Score=29.37 Aligned_cols=95 Identities=15% Similarity=0.217 Sum_probs=49.5
Q ss_pred EEEEEcccccccccceeeeEEE--ecceeeeeccCCCCCC-----CCCcceeeeecCceeEeeccce--eeeCceEEEEE
Q 004240 51 WVYHMGTNSIGHEYCHLRFLFI--RGKYVEMYKRDPHENP-----GIKPIRRGVIGPTLMVEELGRR--RFNHGDVYVMR 121 (766)
Q Consensus 51 w~~~~~~~~~g~~~~~~ry~vl--~~~~~~~yk~~p~~~~-----~~~pir~~~i~~~~rv~d~g~~--~~~~~~~yv~~ 121 (766)
.|.++.. ..-...|+|-| ++..+......+.+.. ...=||.|---.+-+......+ ....+-|=|
T Consensus 11 ~~~K~~~----~~~~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTI-- 84 (115)
T cd01248 11 VFIKWDD----TSRERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTI-- 84 (115)
T ss_pred EEEEEcC----CCceeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEE--
Confidence 4555544 22445688888 5777766544432110 1233444443333332211111 122222222
Q ss_pred EeecCCcCcceeeeccCHHHHHHHHHHHHH
Q 004240 122 LYNRLDESKKGEIACATAGEARKWMEAFDQ 151 (766)
Q Consensus 122 ~yn~~~~~~~~~~aa~~~eea~~W~~~~~~ 151 (766)
||......+-+-|-|.|.++|..|.+.++.
T Consensus 85 iy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 85 VYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred EECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 133332355599999999999999998863
No 119
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=43.66 E-value=2.7e+02 Score=27.41 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=61.5
Q ss_pred ceeeeEEEecceeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEEEEEEeecCCcCcceeeeccCHHHHH
Q 004240 65 CHLRFLFIRGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEAR 143 (766)
Q Consensus 65 ~~~ry~vl~~~~~~~yk~~p~~~~-~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~aa~~~eea~ 143 (766)
.+.|+++|=.+.+=.=|+...... ...| +-+-=.++++.+.|..-+-++.-.=|.||.+.- ...+.+=|.|.|.-.
T Consensus 29 ~~eRhVFLFE~~viF~K~~~~~~~~~~~p--~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~ 105 (133)
T cd01227 29 PMQRHIFLHEKAVLFCKKREENGEGEKAP--SYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKA 105 (133)
T ss_pred CceeEEEEecceEEEEEEeccCCCCCcce--eEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHH
Confidence 467999998888866665521110 1122 234444556666666655555566677777664 679999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004240 144 KWMEAFDQAKQQAE 157 (766)
Q Consensus 144 ~W~~~~~~~~~~~~ 157 (766)
.|++.|.+.+++|-
T Consensus 106 ~Wv~~I~~iL~~Q~ 119 (133)
T cd01227 106 AWVNEIRKVLTSQL 119 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999543
No 120
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=42.91 E-value=70 Score=30.37 Aligned_cols=99 Identities=14% Similarity=0.244 Sum_probs=57.0
Q ss_pred eEEEEE-cccccccccceeeeEEEecceeeeeccCCCCCCC-CCcceee-eecCceeEeecccee--eeCceEEEEEEee
Q 004240 50 GWVYHM-GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPG-IKPIRRG-VIGPTLMVEELGRRR--FNHGDVYVMRLYN 124 (766)
Q Consensus 50 gw~~~~-~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~-~~pir~~-~i~~~~rv~d~g~~~--~~~~~~yv~~~yn 124 (766)
||+=-- ..+.++.+--+.||++|.|+-+-.|+..|.+.-+ ..|.++- +++--+||-..|.-. ..++. |.|+|=
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~-~~F~ir- 80 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRD-NCFLIR- 80 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCc-eEEEEE-
Confidence 565432 1123334445899999999999999999986411 2444432 223334443322211 11222 334332
Q ss_pred cCCcC-cceeeeccCHHHHHHHHHHHHH
Q 004240 125 RLDES-KKGEIACATAGEARKWMEAFDQ 151 (766)
Q Consensus 125 ~~~~~-~~~~~aa~~~eea~~W~~~~~~ 151 (766)
..+. ..-.|...+.+|=+.|.+||.+
T Consensus 81 -tg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 81 -TGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred -cCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 2222 4447889999999999999975
No 121
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=41.72 E-value=76 Score=29.21 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=42.0
Q ss_pred ccccccceeeeEEEecc-eeeeeccCCCCC--CCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecCCcCcceeee
Q 004240 59 SIGHEYCHLRFLFIRGK-YVEMYKRDPHEN--PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIA 135 (766)
Q Consensus 59 ~~g~~~~~~ry~vl~~~-~~~~yk~~p~~~--~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~a 135 (766)
+-|+ |.|+|=|+|-.. .|-|+ +|... .+|+|+-+ -+++|+ ..+++.|+|= +- ++..-|-
T Consensus 10 r~gl-f~kkR~LiLTd~PrL~yv--dp~~~~~KgeIp~s~----~~l~v~-----~~~~~~F~I~----Tp--~rty~le 71 (89)
T cd01262 10 RKGL-FAKKRQLILTNGPRLIYV--DPVKKVVKGEIPWSD----VELRVE-----VKNSSHFFVH----TP--NKVYSFE 71 (89)
T ss_pred hhcc-ccceeeEEEecCceEEEE--cCCcCeEEeEecccc----cceEEE-----EecCccEEEE----CC--CceEEEE
Confidence 3455 779999998653 33333 45432 14566554 256666 5666666661 11 1111221
Q ss_pred ccCHHHHHHHHHHHHHH
Q 004240 136 CATAGEARKWMEAFDQA 152 (766)
Q Consensus 136 a~~~eea~~W~~~~~~~ 152 (766)
.--..|.+|.++|+++
T Consensus 72 -D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 72 -DPKGRASQWKKAIEDL 87 (89)
T ss_pred -CCCCCHHHHHHHHHHH
Confidence 1125789999999987
No 122
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=40.30 E-value=2.5e+02 Score=28.10 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=31.9
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceE
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 307 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~~~e~eVVE~lD~~tD 307 (766)
+..+-.|++||++|++.|.|++. -=.++--++-+++.++.+.
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe~-----~a~ciPG~qs~e~~g~e~~ 44 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPEQ-----VAACIPGVQSVETNGDEYT 44 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHHH-----HHhhcCCcceeeecCCeEE
Confidence 34556799999999999999843 3356778888888877533
No 123
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=37.87 E-value=1e+02 Score=36.67 Aligned_cols=109 Identities=10% Similarity=0.133 Sum_probs=79.8
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004240 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (766)
Q Consensus 43 ~~~~~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~ 122 (766)
....+|+|.+|.-+.-| ---.+=||||+..=|.|+-+--..+|+-.-.=..+=++|+-+-=-|||.+.--+=|-|||
T Consensus 314 ~~~pei~GfL~~K~dgk---KsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~ 390 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDGK---KSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCI 390 (622)
T ss_pred CCCccccceeeeccccc---ccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEe
Confidence 46778999999855444 334778999999999777655555655443445566788888889999999999999999
Q ss_pred eecCCcC--cceee-eccCHHHHHHHHHHHHHHHH
Q 004240 123 YNRLDES--KKGEI-ACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 123 yn~~~~~--~~~~~-aa~~~eea~~W~~~~~~~~~ 154 (766)
==.+..+ +-|+| -|.+-+.--.|+-||+-++-
T Consensus 391 K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 391 KPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred eeccccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence 6544433 34555 45666777899999998865
No 124
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=37.20 E-value=49 Score=41.20 Aligned_cols=83 Identities=11% Similarity=0.246 Sum_probs=64.4
Q ss_pred ccccceeeeEEEecceeeeeccCCCCC-CCCCcceeeeecCceeEeeccceeeeCceEEEEEEeecCCcCcceeeeccCH
Q 004240 61 GHEYCHLRFLFIRGKYVEMYKRDPHEN-PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATA 139 (766)
Q Consensus 61 g~~~~~~ry~vl~~~~~~~yk~~p~~~-~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~aa~~~ 139 (766)
--.+++.|||+|.|.+|..||..-... -.+-||.++.+=-++ +++..--..|-|++| ++ -++.-+-|.+.
T Consensus 1047 ~g~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gv------kkklKpPt~wg~T~i--~e-khh~~l~cd~s 1117 (1186)
T KOG1117|consen 1047 SGNKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGV------KKKLKPPTSWGFTAI--SE-KHHWYLCCDSS 1117 (1186)
T ss_pred cCCccceEEEEecCcEEEEeehhhccccccccccccceEEecc------ccccCCCCccceeee--ee-cceEEEecCCc
Confidence 345779999999999999999776443 248899998764332 345566678999999 33 34888999999
Q ss_pred HHHHHHHHHHHHH
Q 004240 140 GEARKWMEAFDQA 152 (766)
Q Consensus 140 eea~~W~~~~~~~ 152 (766)
-|--.|+-.|-.|
T Consensus 1118 ~~~~ewfts~fka 1130 (1186)
T KOG1117|consen 1118 SEQTEWFTSIFKA 1130 (1186)
T ss_pred cccchhhhhhhhh
Confidence 9999999998766
No 125
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=35.10 E-value=87 Score=37.55 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=60.9
Q ss_pred eeeeEEEEEcccccccccceeeeEEEecceeeeec---cCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEe
Q 004240 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYK---RDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (766)
Q Consensus 47 ~~egw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk---~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~~~~yv~~~y 123 (766)
-.||=++.+-.+ ..-.-.||++|=+..+-|-| +.|-.. -.+=-..-|++....++.-.+ -++.|++=.
T Consensus 273 iKEG~l~Kis~k---~~~~qeRylfLFNd~~lyc~~r~~~~~~k--~~~r~~~s~~~~~v~~~~~~~--~~~tF~~~G-- 343 (623)
T KOG4424|consen 273 IKEGQLQKISAK---NGTTQERYLFLFNDILLYCKPRKRLPGSK--YEVRARCSISHMQVQEDDNEE--LPHTFILTG-- 343 (623)
T ss_pred hhccceeeeecc---CCCcceeEEEEehhHHHhhhhhhhcccce--eccceeeccCcchhccccccc--CCceEEEec--
Confidence 378999988776 33447899999887665543 223222 111112233344444422221 134555544
Q ss_pred ecCCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004240 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (766)
Q Consensus 124 n~~~~~~~~~~aa~~~eea~~W~~~~~~~~~ 154 (766)
+.+-++|.|.+.||...|+.+|.+||+
T Consensus 344 ----~~r~vel~a~t~~ek~eWv~~I~~~Id 370 (623)
T KOG4424|consen 344 ----KKRGVELQARTEQEKKEWVQAIQDAID 370 (623)
T ss_pred ----ccceEEeecCchhhHHHHHHHHHHHHH
Confidence 778899999999999999999999999
No 126
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=27.39 E-value=56 Score=29.94 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=24.9
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCC
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~ 292 (766)
+....+|++||++||+.|.+.+. ..+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~--~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEF--TRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchh--hhheecc
Confidence 45677899999999999999866 7789754
No 127
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=27.12 E-value=88 Score=38.97 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=36.9
Q ss_pred ceEEEEEEeecCCcCcceeeeccCHHHHHHHHHHHHHHHHHHHHHH
Q 004240 115 GDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVEL 160 (766)
Q Consensus 115 ~~~yv~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~~~~~~~~ 160 (766)
+..|||.+--+.--..-+.+||.+.|||-.|..+|+++..-|+...
T Consensus 872 ~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~tk~ 917 (1267)
T KOG1264|consen 872 QKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKADTKE 917 (1267)
T ss_pred CcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4677777766666566789999999999999999999988665543
No 128
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=26.22 E-value=2.2e+02 Score=34.56 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=72.5
Q ss_pred cCCCCCcceeeeEEEEEcccccccccceeeeEEE--ecceeeeec--cCCCCCCCCCcceeeeecCceeEeeccceeeeC
Q 004240 39 GDKEKGYFEYFGWVYHMGTNSIGHEYCHLRFLFI--RGKYVEMYK--RDPHENPGIKPIRRGVIGPTLMVEELGRRRFNH 114 (766)
Q Consensus 39 ~~~~~~~~~~egw~~~~~~~~~g~~~~~~ry~vl--~~~~~~~yk--~~p~~~~~~~pir~~~i~~~~rv~d~g~~~~~~ 114 (766)
-++.++...+||++|--...+||.+| -|-|-+- |.+.++|-- .+|... +-|.-+...-.|.|= --+++..
T Consensus 258 e~k~p~p~t~eGYlY~QEK~~~g~sW-vKyYC~Y~retk~~TMvp~~qk~g~k--~g~~~~~~lKsC~RR---ktdSIdK 331 (812)
T KOG1451|consen 258 EDKRPTPSTKEGYLYMQEKSKIGKSW-VKYYCVYSRETKIFTMVPANQKTGTK--MGQTATFKLKSCSRR---KTDSIDK 331 (812)
T ss_pred cccCCCCcccceeeeehhhhhccchh-hhheeEeecccceEEEeecccCCCCc--CCCcceEEehhhccC---ccccccc
Confidence 34667788899999999999999998 4556554 456666632 233333 557777777777762 2334444
Q ss_pred ceEEEEEEeecCCcCcceeeeccCHHHHHHHHHHHHHH
Q 004240 115 GDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 115 ~~~yv~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
+--|=.++ -+....|+|-|-|-++-.-||+|..-+
T Consensus 332 RFCFDve~---~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 332 RFCFDVEV---EERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred ceeeeeee---cccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 43333333 456789999999999999999988655
No 129
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=25.74 E-value=6.1e+02 Score=24.65 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=28.1
Q ss_pred ceEEEEEEeecCCHHHHHHHHhcCCCcccccccC
Q 004240 258 GVLVKAVGVIDASADTVFEVVLNLERHQRYEWDM 291 (766)
Q Consensus 258 ~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~ 291 (766)
...++.+.+|++||++||+.+.+.+. +.+|=.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe~--l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPEL--LARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHHH--HHhhcC
Confidence 46889999999999999999999865 788876
No 130
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=23.71 E-value=1.8e+02 Score=36.69 Aligned_cols=97 Identities=18% Similarity=0.365 Sum_probs=65.5
Q ss_pred eeeEEEEEccc-------ccccccceeeeEEEecceeeeeccCCCCCCCCCcceeeeecCcee--Eeeccceee-eCceE
Q 004240 48 YFGWVYHMGTN-------SIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLM--VEELGRRRF-NHGDV 117 (766)
Q Consensus 48 ~egw~~~~~~~-------~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~~~pir~~~i~~~~r--v~d~g~~~~-~~~~~ 117 (766)
.-|.+|---++ +=++.=+.++|-||.|-.|.||...-..-|. +.|..+=. +.-.=-+++ +-+++
T Consensus 494 ~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~------~lI~~~Eivclav~~pd~~pn~~~~ 567 (1186)
T KOG1117|consen 494 LCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPN------GLININEIVCLAVHPPDTYPNTGFI 567 (1186)
T ss_pred ccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCC------ceeeccceEEEeecCCCCCCCcCce
Confidence 44888864333 2345556789999999999999977766653 22222211 111111122 44799
Q ss_pred EEEEEeecCCcCcceeeeccCHHHHHHHHHHHHHH
Q 004240 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (766)
Q Consensus 118 yv~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~ 152 (766)
|+|.+|=..+ .-..+|+.+++++.+|-+++-..
T Consensus 568 f~fE~~l~~e--r~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 568 FIFEIYLPGE--RVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred eEEEEeeccc--ceEEeecccHHHHHHHHHHHHHh
Confidence 9999997664 67799999999999999998543
No 131
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=22.86 E-value=68 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=27.8
Q ss_pred eEEEEEEeecCCHHHHHHHHhcCCCcccccccC
Q 004240 259 VLVKAVGVIDASADTVFEVVLNLERHQRYEWDM 291 (766)
Q Consensus 259 ~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~ 291 (766)
..+..+..|++|+++||++|.|... ..+|..
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~--~~~W~~ 41 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPER--LARWFA 41 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHH--HHhhcC
Confidence 5788999999999999999999876 778987
No 132
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=22.40 E-value=94 Score=36.22 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=33.0
Q ss_pred eCceEEEEEEeecCCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004240 113 NHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (766)
Q Consensus 113 ~~~~~yv~~~yn~~~~~~~~~~aa~~~eea~~W~~~~~~~~ 153 (766)
.-+.=|||.+.++-. +++-|=|.+.+|...||++|++++
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 451 GSNAAHVFAVAFKTG--RRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred CCCCCcEEEEEecCC--cEEEEecCCchhHHHHHHHHHHhc
Confidence 334568999988764 788999999999999999999985
No 133
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=22.12 E-value=83 Score=29.22 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEEEeecCCHHHHHHHHhcCCCcccccccCC
Q 004240 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (766)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~~WD~~ 292 (766)
++.+..|++|+++||+.+.+.+. ..+|...
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~~--~~~W~~~ 32 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPEH--FGQWFGV 32 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChhh--hhhcccc
Confidence 56778899999999999999876 6789775
Done!