Query 004241
Match_columns 766
No_of_seqs 539 out of 4068
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 20:00:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01862 putative voltage-gate 100.0 2.8E-79 6E-84 712.5 58.4 550 90-761 23-572 (574)
2 KOG0474 Cl- channel CLC-7 and 100.0 2E-70 4.2E-75 593.2 32.8 593 54-760 55-747 (762)
3 KOG0475 Cl- channel CLC-3 and 100.0 6.1E-70 1.3E-74 591.9 31.5 569 95-760 58-695 (696)
4 PRK01610 putative voltage-gate 100.0 4.7E-62 1E-66 543.4 44.2 411 90-563 3-414 (418)
5 cd01033 ClC_like Putative ClC 100.0 1.5E-59 3.2E-64 519.9 41.3 385 99-552 1-386 (388)
6 KOG0476 Cl- channel CLC-2 and 100.0 1.3E-61 2.9E-66 532.8 20.9 497 92-682 96-648 (931)
7 cd03684 ClC_3_like ClC-3-like 100.0 2E-58 4.4E-63 518.7 36.8 409 99-563 1-437 (445)
8 PRK05277 chloride channel prot 100.0 5.3E-57 1.1E-61 508.4 42.9 413 93-564 2-415 (438)
9 cd01031 EriC ClC chloride chan 100.0 3E-57 6.5E-62 505.7 40.0 400 98-562 1-400 (402)
10 COG0038 EriC Chloride channel 100.0 1.9E-55 4.2E-60 492.8 43.1 407 91-563 22-428 (443)
11 cd03685 ClC_6_like ClC-6-like 100.0 1.6E-56 3.5E-61 505.5 34.6 397 88-564 29-452 (466)
12 cd01034 EriC_like ClC chloride 100.0 9.1E-56 2E-60 491.2 39.0 387 103-560 1-390 (390)
13 cd01036 ClC_euk Chloride chann 100.0 3.1E-55 6.8E-60 489.7 34.1 388 99-560 1-416 (416)
14 cd03683 ClC_1_like ClC-1-like 100.0 3.9E-55 8.4E-60 490.0 33.6 397 92-563 2-416 (426)
15 PF00654 Voltage_CLC: Voltage 100.0 1E-54 2.2E-59 477.3 34.0 350 150-550 1-354 (355)
16 cd00400 Voltage_gated_ClC CLC 100.0 1.1E-53 2.4E-58 474.7 40.0 383 99-546 1-383 (383)
17 PRK03655 putative ion channel 100.0 4E-51 8.7E-56 453.2 42.8 385 88-550 9-398 (414)
18 cd03682 ClC_sycA_like ClC sycA 100.0 2.8E-51 6E-56 453.2 40.5 373 95-559 2-377 (378)
19 PRK01862 putative voltage-gate 99.8 8.9E-19 1.9E-23 204.8 20.0 190 350-560 25-227 (574)
20 COG3448 CBS-domain-containing 99.8 3.8E-18 8.2E-23 172.1 12.8 132 620-762 241-374 (382)
21 cd00400 Voltage_gated_ClC CLC 99.7 5.9E-17 1.3E-21 180.5 16.7 184 357-560 1-194 (383)
22 cd01031 EriC ClC chloride chan 99.7 1E-16 2.3E-21 179.4 16.8 185 356-560 1-195 (402)
23 PRK05277 chloride channel prot 99.7 6.2E-16 1.4E-20 174.9 20.0 190 351-559 2-204 (438)
24 COG2524 Predicted transcriptio 99.7 2.6E-16 5.7E-21 156.6 11.9 123 620-759 168-290 (294)
25 cd01034 EriC_like ClC chloride 99.6 1.2E-14 2.7E-19 161.9 21.1 192 88-337 198-389 (390)
26 cd01033 ClC_like Putative ClC 99.6 3.7E-14 8.1E-19 157.7 21.3 182 89-330 202-386 (388)
27 cd03682 ClC_sycA_like ClC sycA 99.6 1.9E-14 4.2E-19 159.6 18.2 175 353-552 2-180 (378)
28 PRK01610 putative voltage-gate 99.6 4.3E-14 9.3E-19 158.4 17.5 183 349-553 4-201 (418)
29 cd03685 ClC_6_like ClC-6-like 99.5 5.4E-14 1.2E-18 159.7 14.9 197 349-550 32-241 (466)
30 COG3620 Predicted transcriptio 99.5 4.1E-14 8.8E-19 131.2 11.1 123 622-761 63-185 (187)
31 PRK11543 gutQ D-arabinose 5-ph 99.5 4.8E-14 1E-18 153.5 12.9 127 617-758 187-318 (321)
32 PRK10892 D-arabinose 5-phospha 99.5 7.3E-14 1.6E-18 152.4 13.3 122 622-758 200-323 (326)
33 COG0038 EriC Chloride channel 99.5 3.6E-13 7.7E-18 151.9 18.2 145 390-554 67-217 (443)
34 cd04619 CBS_pair_6 The CBS dom 99.5 3.6E-13 7.8E-18 123.2 13.5 111 634-757 3-113 (114)
35 cd03683 ClC_1_like ClC-1-like 99.5 2.1E-13 4.5E-18 153.5 14.3 189 351-551 3-202 (426)
36 cd04603 CBS_pair_KefB_assoc Th 99.5 3.1E-13 6.6E-18 123.1 12.5 109 633-757 2-110 (111)
37 cd01036 ClC_euk Chloride chann 99.5 2.5E-13 5.3E-18 152.6 13.6 191 357-552 1-202 (416)
38 PRK07807 inosine 5-monophospha 99.5 2.8E-13 6E-18 153.1 13.3 126 616-761 81-206 (479)
39 cd04641 CBS_pair_28 The CBS do 99.4 1.1E-12 2.3E-17 121.1 13.5 118 633-757 2-119 (120)
40 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.3E-12 2.8E-17 119.4 13.4 112 633-758 2-115 (115)
41 cd04630 CBS_pair_17 The CBS do 99.4 1.8E-12 3.8E-17 118.4 14.1 112 633-758 2-114 (114)
42 cd03684 ClC_3_like ClC-3-like 99.4 1.4E-12 3.1E-17 147.4 15.7 178 357-551 1-182 (445)
43 cd04617 CBS_pair_4 The CBS dom 99.4 1.6E-12 3.5E-17 119.5 12.9 113 633-757 2-117 (118)
44 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.4E-12 3E-17 120.7 12.5 116 632-758 2-124 (124)
45 cd04618 CBS_pair_5 The CBS dom 99.4 1.4E-12 3E-17 116.4 11.5 94 633-757 2-97 (98)
46 PRK03655 putative ion channel 99.4 7.4E-12 1.6E-16 139.8 19.9 178 349-552 12-203 (414)
47 cd04607 CBS_pair_NTP_transfera 99.4 3.1E-12 6.7E-17 116.5 13.7 110 633-757 3-112 (113)
48 PRK15094 magnesium/cobalt effl 99.4 1.8E-12 4E-17 138.3 13.7 125 621-762 64-191 (292)
49 cd04605 CBS_pair_MET2_assoc Th 99.4 4.5E-12 9.6E-17 114.6 14.3 108 632-757 2-109 (110)
50 cd04596 CBS_pair_DRTGG_assoc T 99.4 2.5E-12 5.5E-17 116.1 11.9 105 633-757 3-107 (108)
51 cd04608 CBS_pair_PALP_assoc Th 99.4 2.1E-12 4.6E-17 120.3 11.4 113 632-758 2-123 (124)
52 COG4109 Predicted transcriptio 99.4 9.5E-13 2.1E-17 136.5 9.5 117 624-760 188-306 (432)
53 cd04639 CBS_pair_26 The CBS do 99.4 3.8E-12 8.3E-17 115.3 12.5 109 633-757 2-110 (111)
54 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 4.5E-12 9.8E-17 113.8 12.8 104 633-757 2-105 (106)
55 cd04801 CBS_pair_M50_like This 99.4 3E-12 6.5E-17 116.8 11.8 111 633-757 2-113 (114)
56 cd04624 CBS_pair_11 The CBS do 99.4 6.5E-12 1.4E-16 113.9 14.0 110 633-757 2-111 (112)
57 cd04623 CBS_pair_10 The CBS do 99.4 7.5E-12 1.6E-16 113.4 13.8 111 633-757 2-112 (113)
58 TIGR03520 GldE gliding motilit 99.4 3.7E-12 8E-17 142.4 14.2 122 620-760 187-311 (408)
59 cd04643 CBS_pair_30 The CBS do 99.4 4.5E-12 9.7E-17 115.7 12.3 113 633-758 2-116 (116)
60 cd04627 CBS_pair_14 The CBS do 99.4 6.4E-12 1.4E-16 116.4 13.4 113 633-756 2-121 (123)
61 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 7.4E-12 1.6E-16 112.8 13.5 107 632-757 2-108 (109)
62 cd04629 CBS_pair_16 The CBS do 99.4 5.2E-12 1.1E-16 114.8 12.4 112 633-757 2-113 (114)
63 cd04631 CBS_pair_18 The CBS do 99.4 5.4E-12 1.2E-16 116.9 12.6 115 633-758 2-125 (125)
64 cd04615 CBS_pair_2 The CBS dom 99.4 1E-11 2.2E-16 112.9 13.9 110 634-757 3-112 (113)
65 cd04803 CBS_pair_15 The CBS do 99.4 6.2E-12 1.3E-16 115.9 12.7 114 633-757 2-121 (122)
66 cd04626 CBS_pair_13 The CBS do 99.4 1E-11 2.2E-16 112.6 13.5 109 633-757 2-110 (111)
67 cd04614 CBS_pair_1 The CBS dom 99.4 6.3E-12 1.4E-16 111.6 11.6 95 633-758 2-96 (96)
68 cd04642 CBS_pair_29 The CBS do 99.4 6E-12 1.3E-16 117.2 11.9 114 633-757 2-125 (126)
69 cd04635 CBS_pair_22 The CBS do 99.4 6.2E-12 1.4E-16 115.9 11.9 115 633-758 2-122 (122)
70 cd04590 CBS_pair_CorC_HlyC_ass 99.4 1.1E-11 2.5E-16 112.1 13.3 108 633-757 2-110 (111)
71 TIGR00400 mgtE Mg2+ transporte 99.3 3.6E-12 7.9E-17 144.5 11.9 122 621-762 128-254 (449)
72 cd04632 CBS_pair_19 The CBS do 99.3 1.4E-11 2.9E-16 115.0 13.7 116 633-757 2-127 (128)
73 cd04621 CBS_pair_8 The CBS dom 99.3 1.1E-11 2.4E-16 117.3 13.2 113 633-757 2-134 (135)
74 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 1E-11 2.2E-16 112.8 12.3 111 633-757 3-113 (114)
75 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 1.3E-11 2.8E-16 112.1 12.8 112 633-757 2-113 (114)
76 cd04640 CBS_pair_27 The CBS do 99.3 9.8E-12 2.1E-16 115.8 12.3 114 633-757 2-125 (126)
77 cd04595 CBS_pair_DHH_polyA_Pol 99.3 1.9E-11 4.1E-16 110.6 13.6 108 632-757 2-109 (110)
78 cd04588 CBS_pair_CAP-ED_DUF294 99.3 1.9E-11 4.1E-16 110.5 13.5 108 633-757 2-109 (110)
79 COG2905 Predicted signal-trans 99.3 5E-12 1.1E-16 139.1 11.4 128 620-762 145-272 (610)
80 cd04586 CBS_pair_BON_assoc Thi 99.3 9.6E-12 2.1E-16 117.3 11.7 115 632-758 2-135 (135)
81 cd04587 CBS_pair_CAP-ED_DUF294 99.3 1.5E-11 3.3E-16 111.6 12.5 111 633-757 2-112 (113)
82 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 7.4E-12 1.6E-16 141.4 12.8 124 618-762 82-205 (475)
83 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 2.1E-11 4.5E-16 110.2 13.2 109 633-757 2-110 (111)
84 cd04620 CBS_pair_7 The CBS dom 99.3 1.7E-11 3.6E-16 111.9 12.6 110 633-757 2-114 (115)
85 TIGR00393 kpsF KpsF/GutQ famil 99.3 9E-12 1.9E-16 132.1 12.0 114 623-751 154-268 (268)
86 cd04625 CBS_pair_12 The CBS do 99.3 3E-11 6.5E-16 109.6 13.8 110 633-757 2-111 (112)
87 cd04589 CBS_pair_CAP-ED_DUF294 99.3 3.2E-11 7E-16 109.2 13.8 109 633-757 2-110 (111)
88 PF00654 Voltage_CLC: Voltage 99.3 1.4E-11 3.1E-16 135.8 13.7 147 395-560 1-151 (355)
89 PRK07107 inosine 5-monophospha 99.3 7.7E-12 1.7E-16 142.2 11.7 120 624-759 94-219 (502)
90 cd04585 CBS_pair_ACT_assoc2 Th 99.3 2.3E-11 4.9E-16 111.7 12.7 113 633-757 2-121 (122)
91 cd04800 CBS_pair_CAP-ED_DUF294 99.3 3.5E-11 7.6E-16 108.9 13.7 109 633-757 2-110 (111)
92 cd04622 CBS_pair_9 The CBS dom 99.3 3.1E-11 6.6E-16 109.6 13.3 111 633-757 2-112 (113)
93 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 2.7E-11 5.9E-16 109.4 12.8 109 633-757 2-110 (111)
94 cd04602 CBS_pair_IMPDH_2 This 99.3 2.2E-11 4.7E-16 111.2 12.2 106 633-757 3-113 (114)
95 TIGR01137 cysta_beta cystathio 99.3 1.9E-11 4E-16 139.6 14.3 125 618-759 329-453 (454)
96 cd04637 CBS_pair_24 The CBS do 99.3 4.6E-11 9.9E-16 110.2 14.2 113 633-757 2-121 (122)
97 TIGR01302 IMP_dehydrog inosine 99.3 1.7E-11 3.7E-16 138.8 13.6 122 620-760 76-201 (450)
98 cd04584 CBS_pair_ACT_assoc Thi 99.3 3.5E-11 7.6E-16 110.6 13.1 114 633-758 2-121 (121)
99 cd04606 CBS_pair_Mg_transporte 99.3 1.5E-11 3.3E-16 111.2 10.5 102 637-758 2-108 (109)
100 cd04636 CBS_pair_23 The CBS do 99.3 2.9E-11 6.3E-16 113.5 12.8 113 633-757 2-131 (132)
101 cd04601 CBS_pair_IMPDH This cd 99.3 2.1E-11 4.5E-16 110.0 10.9 107 632-757 2-109 (110)
102 PLN02274 inosine-5'-monophosph 99.3 2.4E-11 5.2E-16 138.5 13.9 119 626-761 102-223 (505)
103 cd04802 CBS_pair_3 The CBS dom 99.3 5.8E-11 1.3E-15 107.6 13.7 110 633-757 2-111 (112)
104 cd04599 CBS_pair_GGDEF_assoc2 99.3 3.8E-11 8.3E-16 107.4 12.2 103 633-757 2-104 (105)
105 cd04594 CBS_pair_EriC_assoc_ar 99.3 4.1E-11 8.9E-16 107.5 12.3 100 635-757 4-103 (104)
106 cd04610 CBS_pair_ParBc_assoc T 99.3 3.8E-11 8.1E-16 107.8 11.7 105 632-757 2-106 (107)
107 cd04598 CBS_pair_GGDEF_assoc T 99.3 4.9E-11 1.1E-15 109.4 12.4 113 633-757 2-118 (119)
108 cd04633 CBS_pair_20 The CBS do 99.3 5.9E-11 1.3E-15 109.2 12.7 112 633-757 2-120 (121)
109 PRK05567 inosine 5'-monophosph 99.3 3.8E-11 8.2E-16 137.4 13.4 119 623-760 86-205 (486)
110 cd04591 CBS_pair_EriC_assoc_eu 99.2 8.4E-11 1.8E-15 106.1 12.6 101 632-758 2-105 (105)
111 COG0517 FOG: CBS domain [Gener 99.2 1.2E-10 2.6E-15 106.2 13.3 113 628-756 3-117 (117)
112 cd04609 CBS_pair_PALP_assoc2 T 99.2 9.3E-11 2E-15 105.6 12.3 108 633-757 2-109 (110)
113 cd02205 CBS_pair The CBS domai 99.2 2.2E-10 4.8E-15 102.6 13.6 111 633-757 2-112 (113)
114 PTZ00314 inosine-5'-monophosph 99.2 7.1E-11 1.5E-15 134.6 12.7 120 624-760 96-218 (495)
115 cd04634 CBS_pair_21 The CBS do 99.2 1.9E-10 4.1E-15 109.8 13.3 112 633-757 2-142 (143)
116 cd04638 CBS_pair_25 The CBS do 99.2 2.4E-10 5.1E-15 102.7 12.5 104 633-757 2-105 (106)
117 COG2239 MgtE Mg/Co/Ni transpor 99.2 9.4E-11 2E-15 130.5 10.8 119 624-762 132-255 (451)
118 PRK14869 putative manganese-de 99.2 1.7E-10 3.7E-15 134.6 13.4 127 624-761 68-305 (546)
119 PRK11573 hypothetical protein; 99.2 2.9E-10 6.2E-15 127.3 14.5 127 620-761 183-312 (413)
120 cd04592 CBS_pair_EriC_assoc_eu 99.1 2.5E-10 5.5E-15 107.8 11.0 109 632-740 1-120 (133)
121 COG1253 TlyC Hemolysins and re 99.0 3.6E-09 7.8E-14 119.5 14.0 125 620-761 202-329 (429)
122 COG4536 CorB Putative Mg2+ and 98.9 4.4E-09 9.5E-14 110.9 10.3 125 621-760 197-324 (423)
123 PF00571 CBS: CBS domain CBS d 98.7 3.4E-08 7.3E-13 78.5 7.3 56 626-681 1-56 (57)
124 PF00571 CBS: CBS domain CBS d 98.7 5.8E-08 1.3E-12 77.1 7.2 55 694-759 1-55 (57)
125 KOG1764 5'-AMP-activated prote 98.6 1.6E-07 3.5E-12 103.7 11.7 123 633-762 238-361 (381)
126 KOG2550 IMP dehydrogenase/GMP 98.6 5.7E-08 1.2E-12 103.2 7.0 110 632-760 116-228 (503)
127 TIGR01186 proV glycine betaine 98.6 3.5E-07 7.7E-12 100.7 13.4 113 630-762 248-360 (363)
128 PRK10070 glycine betaine trans 98.6 3.4E-07 7.4E-12 102.0 12.9 121 622-762 272-395 (400)
129 COG4535 CorC Putative Mg2+ and 98.6 1E-07 2.3E-12 94.5 7.2 124 621-761 64-190 (293)
130 KOG0474 Cl- channel CLC-7 and 98.4 3.4E-07 7.4E-12 102.1 7.1 193 349-550 87-301 (762)
131 TIGR00400 mgtE Mg2+ transporte 98.3 2.5E-07 5.3E-12 105.3 3.7 113 623-760 194-306 (449)
132 COG3448 CBS-domain-containing 98.3 2E-06 4.3E-11 88.2 8.6 80 671-761 221-303 (382)
133 COG2524 Predicted transcriptio 98.1 6E-06 1.3E-10 83.4 6.2 60 622-681 232-291 (294)
134 KOG0476 Cl- channel CLC-2 and 98.0 2.5E-05 5.4E-10 89.2 9.8 172 348-530 94-274 (931)
135 cd04597 CBS_pair_DRTGG_assoc2 97.9 1E-05 2.2E-10 73.9 5.1 55 624-678 58-112 (113)
136 cd04603 CBS_pair_KefB_assoc Th 97.9 1.7E-05 3.7E-10 71.8 6.0 55 624-678 56-110 (111)
137 PRK14869 putative manganese-de 97.9 3.9E-06 8.5E-11 98.2 1.0 129 618-758 240-391 (546)
138 COG3620 Predicted transcriptio 97.9 3.1E-05 6.6E-10 72.8 6.4 59 691-761 64-122 (187)
139 cd04619 CBS_pair_6 The CBS dom 97.8 3.4E-05 7.3E-10 70.2 5.7 57 622-678 57-113 (114)
140 cd04597 CBS_pair_DRTGG_assoc2 97.8 6.2E-05 1.3E-09 68.8 6.9 55 692-757 58-112 (113)
141 PRK07807 inosine 5-monophospha 97.7 0.00016 3.4E-09 82.5 10.5 100 624-737 148-247 (479)
142 PRK05567 inosine 5'-monophosph 97.7 9.2E-05 2E-09 85.2 8.0 118 623-758 146-265 (486)
143 KOG1764 5'-AMP-activated prote 97.6 0.00025 5.5E-09 78.6 10.8 124 633-764 163-290 (381)
144 TIGR01303 IMP_DH_rel_1 IMP deh 97.6 0.00023 4.9E-09 81.2 10.3 59 624-682 146-204 (475)
145 cd04607 CBS_pair_NTP_transfera 97.6 0.00012 2.6E-09 66.2 6.1 54 624-677 58-111 (113)
146 cd04600 CBS_pair_HPP_assoc Thi 97.6 0.0001 2.2E-09 67.7 5.4 57 622-678 67-123 (124)
147 cd04620 CBS_pair_7 The CBS dom 97.6 0.00013 2.8E-09 66.1 6.1 56 623-678 57-114 (115)
148 cd04627 CBS_pair_14 The CBS do 97.6 0.00015 3.2E-09 66.8 6.4 53 625-677 69-121 (123)
149 cd04617 CBS_pair_4 The CBS dom 97.5 0.00012 2.6E-09 66.9 5.2 57 622-678 56-117 (118)
150 cd04615 CBS_pair_2 The CBS dom 97.5 0.00017 3.7E-09 65.0 6.1 58 621-678 55-112 (113)
151 cd04606 CBS_pair_Mg_transporte 97.5 0.00016 3.6E-09 64.9 5.7 57 623-679 52-108 (109)
152 cd04596 CBS_pair_DRTGG_assoc T 97.5 0.00018 3.9E-09 64.5 5.8 56 623-678 52-107 (108)
153 cd04630 CBS_pair_17 The CBS do 97.5 0.00015 3.4E-09 65.6 5.4 56 622-678 58-113 (114)
154 cd04585 CBS_pair_ACT_assoc2 Th 97.5 0.0002 4.4E-09 65.1 6.0 57 622-678 65-121 (122)
155 KOG0475 Cl- channel CLC-3 and 97.5 9.3E-05 2E-09 83.4 4.3 111 405-530 150-260 (696)
156 cd04610 CBS_pair_ParBc_assoc T 97.5 0.00022 4.7E-09 63.5 6.0 56 623-678 51-106 (107)
157 cd04604 CBS_pair_KpsF_GutQ_ass 97.4 0.00026 5.6E-09 63.8 6.1 55 624-678 59-113 (114)
158 cd04625 CBS_pair_12 The CBS do 97.4 0.00021 4.5E-09 64.3 5.4 55 623-678 57-111 (112)
159 cd04587 CBS_pair_CAP-ED_DUF294 97.4 0.00019 4.1E-09 64.6 4.7 55 624-678 58-112 (113)
160 cd04611 CBS_pair_PAS_GGDEF_DUF 97.4 0.00031 6.7E-09 62.9 6.1 57 622-678 54-110 (111)
161 cd04635 CBS_pair_22 The CBS do 97.4 0.00024 5.2E-09 65.0 5.4 57 622-678 65-121 (122)
162 cd04583 CBS_pair_ABC_OpuCA_ass 97.4 0.00031 6.7E-09 62.7 6.0 55 624-678 54-108 (109)
163 cd04582 CBS_pair_ABC_OpuCA_ass 97.4 0.00034 7.4E-09 62.2 6.2 54 625-678 52-105 (106)
164 cd04602 CBS_pair_IMPDH_2 This 97.4 0.0003 6.6E-09 63.7 5.9 55 624-678 57-113 (114)
165 cd04803 CBS_pair_15 The CBS do 97.4 0.00028 6.1E-09 64.5 5.7 57 622-678 65-121 (122)
166 cd04618 CBS_pair_5 The CBS dom 97.4 0.00028 6.1E-09 62.6 5.5 45 634-678 52-97 (98)
167 cd04639 CBS_pair_26 The CBS do 97.4 0.00028 6.1E-09 63.4 5.6 55 624-678 56-110 (111)
168 cd04593 CBS_pair_EriC_assoc_ba 97.4 0.00027 5.9E-09 64.0 5.5 55 624-678 58-114 (115)
169 cd04601 CBS_pair_IMPDH This cd 97.4 0.00035 7.6E-09 62.4 6.1 56 623-678 53-109 (110)
170 cd04631 CBS_pair_18 The CBS do 97.3 0.00029 6.3E-09 64.7 5.4 56 623-678 69-124 (125)
171 PRK07107 inosine 5-monophospha 97.3 0.00063 1.4E-08 78.1 9.2 59 622-680 159-219 (502)
172 cd04641 CBS_pair_28 The CBS do 97.3 0.00058 1.3E-08 62.5 7.3 49 707-760 2-50 (120)
173 cd04595 CBS_pair_DHH_polyA_Pol 97.3 0.00039 8.4E-09 62.4 5.9 56 622-678 54-109 (110)
174 cd04801 CBS_pair_M50_like This 97.3 0.00029 6.4E-09 63.7 5.0 56 623-678 56-113 (114)
175 COG4175 ProV ABC-type proline/ 97.3 0.00024 5.2E-09 74.6 4.8 129 603-761 254-384 (386)
176 cd04622 CBS_pair_9 The CBS dom 97.3 0.00035 7.7E-09 62.8 5.4 55 624-678 58-112 (113)
177 cd04621 CBS_pair_8 The CBS dom 97.3 0.00045 9.7E-09 65.1 6.2 55 623-678 80-134 (135)
178 smart00116 CBS Domain in cysta 97.3 0.00067 1.5E-08 50.3 6.0 47 708-759 2-48 (49)
179 cd04636 CBS_pair_23 The CBS do 97.3 0.00055 1.2E-08 63.8 6.6 57 621-678 75-131 (132)
180 cd04642 CBS_pair_29 The CBS do 97.3 0.00054 1.2E-08 63.4 6.3 52 627-678 74-125 (126)
181 cd04623 CBS_pair_10 The CBS do 97.3 0.00052 1.1E-08 61.6 6.0 55 623-678 58-112 (113)
182 cd04605 CBS_pair_MET2_assoc Th 97.3 0.00055 1.2E-08 61.3 6.1 54 625-678 56-109 (110)
183 cd04640 CBS_pair_27 The CBS do 97.3 0.0003 6.5E-09 65.1 4.5 56 623-678 63-125 (126)
184 cd04586 CBS_pair_BON_assoc Thi 97.3 0.00031 6.8E-09 65.8 4.6 56 622-678 79-134 (135)
185 cd04588 CBS_pair_CAP-ED_DUF294 97.3 0.00053 1.2E-08 61.4 5.9 55 624-678 55-109 (110)
186 cd04613 CBS_pair_SpoIVFB_EriC_ 97.2 0.00046 1E-08 62.0 5.5 56 623-678 57-113 (114)
187 cd04800 CBS_pair_CAP-ED_DUF294 97.2 0.0005 1.1E-08 61.7 5.6 55 623-678 56-110 (111)
188 PRK11543 gutQ D-arabinose 5-ph 97.2 0.00047 1E-08 75.2 6.4 57 623-679 262-318 (321)
189 cd04802 CBS_pair_3 The CBS dom 97.2 0.00055 1.2E-08 61.6 5.8 56 622-678 56-111 (112)
190 cd04612 CBS_pair_SpoIVFB_EriC_ 97.2 0.00061 1.3E-08 61.0 6.1 55 624-678 56-110 (111)
191 cd04629 CBS_pair_16 The CBS do 97.2 0.00037 8.1E-09 62.8 4.7 55 623-678 59-113 (114)
192 smart00116 CBS Domain in cysta 97.2 0.00081 1.8E-08 49.8 5.8 47 634-680 2-48 (49)
193 cd04626 CBS_pair_13 The CBS do 97.2 0.00052 1.1E-08 61.7 5.5 54 623-677 56-109 (111)
194 TIGR03415 ABC_choXWV_ATP choli 97.2 0.00096 2.1E-08 74.1 8.6 112 619-760 269-380 (382)
195 cd04633 CBS_pair_20 The CBS do 97.2 0.00048 1E-08 62.9 5.3 57 621-678 64-120 (121)
196 cd04599 CBS_pair_GGDEF_assoc2 97.2 0.00058 1.3E-08 60.5 5.6 53 624-677 51-103 (105)
197 cd04624 CBS_pair_11 The CBS do 97.2 0.00064 1.4E-08 61.1 5.9 56 623-678 56-111 (112)
198 COG4109 Predicted transcriptio 97.2 0.00066 1.4E-08 71.8 6.4 65 619-683 244-308 (432)
199 cd04589 CBS_pair_CAP-ED_DUF294 97.2 0.0007 1.5E-08 60.8 5.8 56 622-678 55-110 (111)
200 cd04592 CBS_pair_EriC_assoc_eu 97.2 0.0012 2.5E-08 62.3 7.4 50 707-761 2-51 (133)
201 cd04637 CBS_pair_24 The CBS do 97.2 0.00062 1.3E-08 62.3 5.4 55 624-678 67-121 (122)
202 cd04594 CBS_pair_EriC_assoc_ar 97.1 0.00068 1.5E-08 60.4 5.2 53 625-678 51-103 (104)
203 PRK10892 D-arabinose 5-phospha 97.1 0.00068 1.5E-08 74.1 6.3 57 622-679 267-323 (326)
204 cd04614 CBS_pair_1 The CBS dom 97.1 0.0013 2.9E-08 57.9 6.6 47 707-758 2-48 (96)
205 PLN02274 inosine-5'-monophosph 97.1 0.00094 2E-08 76.8 6.9 60 623-682 162-223 (505)
206 cd04590 CBS_pair_CorC_HlyC_ass 97.1 0.0009 1.9E-08 60.0 5.3 54 624-678 57-110 (111)
207 cd04584 CBS_pair_ACT_assoc Thi 97.0 0.001 2.3E-08 60.5 5.8 57 621-678 64-120 (121)
208 cd04632 CBS_pair_19 The CBS do 97.0 0.0011 2.4E-08 61.4 5.9 57 622-678 69-127 (128)
209 COG0517 FOG: CBS domain [Gener 97.0 0.0012 2.6E-08 59.6 5.8 52 625-676 63-116 (117)
210 cd04608 CBS_pair_PALP_assoc Th 97.0 0.0021 4.6E-08 59.5 7.3 49 707-760 3-51 (124)
211 cd04643 CBS_pair_30 The CBS do 97.0 0.002 4.4E-08 58.1 7.0 49 707-760 2-50 (116)
212 cd04598 CBS_pair_GGDEF_assoc T 96.9 0.0014 2.9E-08 59.7 5.5 57 622-678 59-118 (119)
213 cd04591 CBS_pair_EriC_assoc_eu 96.9 0.0015 3.3E-08 58.5 5.4 49 629-678 56-104 (105)
214 TIGR00393 kpsF KpsF/GutQ famil 96.8 0.0023 5.1E-08 67.7 6.9 57 692-759 155-212 (268)
215 PRK15094 magnesium/cobalt effl 96.8 0.0028 6.1E-08 68.0 7.2 95 624-724 133-227 (292)
216 PTZ00314 inosine-5'-monophosph 96.8 0.0018 4E-08 74.4 5.9 59 623-681 158-218 (495)
217 cd04609 CBS_pair_PALP_assoc2 T 96.7 0.0019 4.1E-08 57.6 4.7 54 623-678 56-109 (110)
218 TIGR01137 cysta_beta cystathio 96.7 0.0033 7.1E-08 72.0 7.8 59 691-760 334-392 (454)
219 TIGR03520 GldE gliding motilit 96.7 0.0035 7.6E-08 70.6 7.8 96 624-726 255-350 (408)
220 cd02205 CBS_pair The CBS domai 96.7 0.0027 5.8E-08 56.1 5.6 53 626-678 60-112 (113)
221 COG2239 MgtE Mg/Co/Ni transpor 96.7 0.002 4.4E-08 72.5 5.7 62 622-683 194-255 (451)
222 cd04634 CBS_pair_21 The CBS do 96.6 0.0038 8.3E-08 59.3 6.3 56 622-678 87-142 (143)
223 cd04638 CBS_pair_25 The CBS do 96.6 0.0038 8.2E-08 55.5 5.5 53 625-678 53-105 (106)
224 TIGR01302 IMP_dehydrog inosine 96.6 0.0032 6.9E-08 71.8 6.0 59 623-681 142-201 (450)
225 COG2905 Predicted signal-trans 96.2 0.01 2.2E-07 66.9 6.8 59 692-761 149-207 (610)
226 TIGR01186 proV glycine betaine 95.9 0.014 3.1E-07 64.6 6.7 58 624-682 302-359 (363)
227 PRK11573 hypothetical protein; 95.3 0.038 8.3E-07 62.3 7.2 62 690-759 185-246 (413)
228 COG1125 OpuBA ABC-type proline 95.2 0.11 2.5E-06 53.5 9.5 148 596-758 151-308 (309)
229 PRK10070 glycine betaine trans 94.9 0.049 1.1E-06 61.1 6.7 58 624-682 337-394 (400)
230 COG1253 TlyC Hemolysins and re 94.2 0.12 2.6E-06 58.8 7.8 50 633-682 280-329 (429)
231 KOG2550 IMP dehydrogenase/GMP 94.1 0.051 1.1E-06 59.0 4.1 58 623-680 170-227 (503)
232 COG4535 CorC Putative Mg2+ and 93.4 0.086 1.9E-06 53.3 4.1 97 642-762 33-129 (293)
233 COG4536 CorB Putative Mg2+ and 90.5 1 2.3E-05 48.8 8.3 49 633-681 276-324 (423)
234 TIGR03415 ABC_choXWV_ATP choli 87.0 1 2.2E-05 50.4 5.7 54 625-681 327-380 (382)
235 COG1125 OpuBA ABC-type proline 86.9 0.7 1.5E-05 47.9 4.0 79 600-678 222-307 (309)
236 KOG2118 Predicted membrane pro 85.3 1 2.2E-05 52.0 4.7 127 618-760 198-328 (498)
237 COG4175 ProV ABC-type proline/ 77.4 3.6 7.8E-05 44.2 5.0 52 629-681 332-383 (386)
238 TIGR01148 mtrC N5-methyltetrah 34.7 4E+02 0.0087 27.9 10.5 17 353-369 19-35 (265)
239 PF10518 TAT_signal: TAT (twin 34.3 26 0.00056 23.1 1.3 23 265-287 3-25 (26)
240 PRK09765 PTS system 2-O-a-mann 33.7 5.3E+02 0.011 31.0 13.2 25 271-296 526-551 (631)
241 PF01102 Glycophorin_A: Glycop 32.7 67 0.0015 29.8 4.3 17 351-367 66-82 (122)
242 PF13807 GNVR: G-rich domain o 31.3 82 0.0018 26.7 4.4 25 87-111 57-81 (82)
243 TIGR02865 spore_II_E stage II 29.2 1.2E+03 0.025 28.9 19.5 38 466-516 197-234 (764)
244 PRK01030 tetrahydromethanopter 28.5 5.3E+02 0.011 27.1 10.2 18 353-370 12-29 (264)
245 PRK10026 arsenate reductase; P 28.3 4.4E+02 0.0096 25.0 9.2 107 635-759 7-116 (141)
246 PRK10490 sensor protein KdpD; 25.5 2E+02 0.0043 36.1 8.2 53 316-369 448-500 (895)
247 PRK11388 DNA-binding transcrip 24.4 2E+02 0.0043 34.6 7.6 95 643-751 61-162 (638)
248 PF05399 EVI2A: Ectropic viral 23.3 2.8E+02 0.0061 28.1 6.9 54 66-119 105-158 (227)
249 PF13303 PTS_EIIC_2: Phosphotr 22.2 9.8E+02 0.021 26.2 11.6 74 316-403 96-169 (327)
250 PRK01844 hypothetical protein; 21.6 1.8E+02 0.004 24.2 4.4 18 351-368 7-24 (72)
No 1
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=2.8e-79 Score=712.53 Aligned_cols=550 Identities=27% Similarity=0.405 Sum_probs=454.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004241 90 GVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDD 169 (766)
Q Consensus 90 ~~~l~~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~ 169 (766)
.++++++++|+++|+++.+|+++++++++++|+..+. +... ....+|++.+++|++||+++++++++....++
T Consensus 23 ~~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~-- 95 (574)
T PRK01862 23 TMLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGS----FVEM-AKSLPWYVRVWLPAAGGFLAGCVLLLANRGAR-- 95 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch----HHHH-hhcccHHHHHHHHHHHHHHHHHHHHHhccccc--
Confidence 4678999999999999999999999999999875321 1111 11235666788999999999988664333211
Q ss_pred CCCcchhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHH
Q 004241 170 DDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGK 249 (766)
Q Consensus 170 ~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa 249 (766)
+ + +++++.+... +.+...++++.+.|++++++++++|+|+|||||++|+|+
T Consensus 96 ~-~-g~~~~~~~~~---------------------------~~~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga 146 (574)
T PRK01862 96 K-G-GKTDYMEAVA---------------------------LGDGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAA 146 (574)
T ss_pred c-C-CcHHHHHHHH---------------------------cCCCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHH
Confidence 1 2 2333322100 011112345567899999999999999999999999999
Q ss_pred HHHHHHhhhhCCCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHh
Q 004241 250 SIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEV 329 (766)
Q Consensus 250 ~ig~~l~~~~~~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~ 329 (766)
++|++++++++++++++|.+++||+|||+||+||||++|++|++|+++.+ ++.+.+.+ +++++++|+++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~-------~~~~~~~~-~~~as~~a~~v~~~ 218 (574)
T PRK01862 147 LAASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGS-------IAMESFGP-LVVASVVANIVMRE 218 (574)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhh-------ccHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764 23455555 68899999999999
Q ss_pred hcCCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcc
Q 004241 330 GLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPE 409 (766)
Q Consensus 330 ~~g~~~~f~~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~ 409 (766)
+.|+++.|.++.++..+..++++++++|++||++|.+|+++..+.++++++ .+.+.+++++++|++++++.+++|+
T Consensus 219 ~~g~~~~~~~~~~~~~~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~----~~~~~~~~~~~~gl~~g~l~~~~p~ 294 (574)
T PRK01862 219 FAGYQPPYEMPVFPAVTGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKR----LPVPLPVRLALGGLLVGVISVWVPE 294 (574)
T ss_pred HcCCCceeeCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCchhHHHHHHHHHHHHHHHHHHH
Confidence 899999999886665567889999999999999999999988776554432 3345667889999999999999999
Q ss_pred cccCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCcc
Q 004241 410 ILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489 (766)
Q Consensus 410 ~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~ 489 (766)
.+|+||+.++.++++. .+...++.++++|+++|++|+|+|+|||+|+|++++||++|+++|++++.+++.
T Consensus 295 ~~g~G~~~i~~~~~~~-----~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~----- 364 (574)
T PRK01862 295 VWGNGYSVVNTILHAP-----WTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPG----- 364 (574)
T ss_pred HhcCCHHHHHHHHcCC-----chHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 9999999999988764 345566777899999999999999999999999999999999999999876553
Q ss_pred ccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCCcchhhHHHhhhcc
Q 004241 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANT 569 (766)
Q Consensus 490 ~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~~v~~~~~~~~~~~~~~~~~~~~~ 569 (766)
....|..|+++||+|++++++|+|++++++++|+|+++++++|+|+++++|+++++. ++.+++|+.....+.
T Consensus 365 -----~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~-~~~~~iy~~~~~~~~-- 436 (574)
T PRK01862 365 -----HTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARA-LGTTSMYEITLRRHQ-- 436 (574)
T ss_pred -----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHhcc--
Confidence 224578899999999999999999999999999999999999999999999998764 467889987542100
Q ss_pred ccccchhhccccccCCCCccccccchhhhhhhhhhccccccccchhhhhhhccccccccccccceeEEeCCccHHHHHHH
Q 004241 570 NRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTL 649 (766)
Q Consensus 570 ~~~~~~~~~p~~~~~l~~~~~l~~~~~~~~~l~~~~s~~~~~d~~~~~~~~l~~~~V~diM~~~~~~V~~~~tl~eal~~ 649 (766)
.+.+.+.++.++++|+|+++..++++++++.|+.+.
T Consensus 437 --------------------------------------------~~~~~~~L~~~~V~dim~~~~~~v~~~~tl~ea~~~ 472 (574)
T PRK01862 437 --------------------------------------------DEAERERLRTTQMRELIQPAQTVVPPTASVADMTRV 472 (574)
T ss_pred --------------------------------------------ccchhhHHhhCcHHHHhcCCCceeCCCCCHHHHHHH
Confidence 012356788899999999999999999999999999
Q ss_pred HHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCC
Q 004241 650 MLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGV 729 (766)
Q Consensus 650 m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~ 729 (766)
|.+++.+.+||+|++++++|+|+.+|+.+.+.+.+ ...+.+++|+|++ ++.++++|+++.|++++|.+++.
T Consensus 473 l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~---~~~~~~v~dim~~------~~~~v~~d~~L~~al~~m~~~~~ 543 (574)
T PRK01862 473 FLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR---DTTDKTAADYAHT------PFPLLTPDMPLGDALEHFMAFQG 543 (574)
T ss_pred HHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc---ccccchHHHhccC------CCeeECCCCCHHHHHHHHHhcCC
Confidence 99999999999999999999999999987654321 1123578999988 78899999999999999999999
Q ss_pred CEEEEEeccCCCCCCcEEEEEeHHHHHHHhhc
Q 004241 730 NQVPVVMEHIPGQRGQLVGLLDRESIILACRF 761 (766)
Q Consensus 730 ~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~ 761 (766)
+++||||+++ +++++|+||++|+++++++
T Consensus 544 ~~lpVVd~~~---~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 544 ERLPVVESEA---SPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CeeeeEeCCC---CCeEEEEEEHHHHHHHHHh
Confidence 9999999621 2589999999999998865
No 2
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-70 Score=593.21 Aligned_cols=593 Identities=20% Similarity=0.271 Sum_probs=435.3
Q ss_pred CCccccccCCCCCcchhccCCCccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccc
Q 004241 54 TKSLRLRPLGALPENERNRKEQPMIIGIDGHEVGNSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLR 133 (766)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~ 133 (766)
-+|++|.+- ||+-+++||... -.....+.+...|.+++++|+.+|+++.+.+..+|.+..+++...... ...
T Consensus 55 yESLDYei~----ENdlf~e~~r~~-~k~~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~---v~~ 126 (762)
T KOG0474|consen 55 YESLDYEIC----ENDLFLEDWRTR-DKKKGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNS---VEE 126 (762)
T ss_pred ccccchhhh----cchHHHHHHHhh-cccceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH---HHH
Confidence 577777777 777665554421 112222445677999999999999999999999999998887654211 000
Q ss_pred c-CCCchhHHHHHHH---HHHHHHHHHHHHHHHhhhcCCCCCCcchhhccccCCCCCCCcccccccchhhhhcccCCCCc
Q 004241 134 E-KPIPAIWIRVVLV---PACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPT 209 (766)
Q Consensus 134 ~-~~~~~~w~~~~l~---p~~ggl~~g~l~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 209 (766)
. ...+-.|..++.+ -+.--++.+.+..+ + .+...|+||||+| .|.|+- ++|
T Consensus 127 ~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~---i-aP~AAGSGIPevK--~YLNGV------------------~iP- 181 (762)
T KOG0474|consen 127 CRSQKGCLALSLLVLLGFNLVLVFLASVLVAY---I-APVAAGSGIPEVK--CYLNGV------------------KIP- 181 (762)
T ss_pred hhhccccHHHHHHHHHHHhHHHHHHHHHHHHe---e-chhccCCCCchhh--hhhcCc------------------cCc-
Confidence 0 0111233322111 11111222222211 1 5567889999998 477753 234
Q ss_pred cccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHHHHHHHhh-----------hhC--CCchhhHHHHhhhhhH
Q 004241 210 IYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGN-----------LFD--RRPRRKVSLVAAGSAA 276 (766)
Q Consensus 210 ~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~ig~~l~~-----------~~~--~~~~~~r~l~~~G~aA 276 (766)
+....+|++.|+++.+.++++|+.+||||||+|.||+||+.++| ||+ ++|+|||++++||+||
T Consensus 182 ----~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAA 257 (762)
T KOG0474|consen 182 ----GIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAA 257 (762)
T ss_pred ----ceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHH
Confidence 35567789999999999999999999999999999999999998 233 6889999999999999
Q ss_pred HHHHhhcchhHHHHHHHHhh--ccccccccchhhhhhHHHHHHHHHHHHHHHHHh-----hcCC------CC--ccccCc
Q 004241 277 GISSGFNAAVAGCFFAVESV--IWPSSAADSSASLAYTTSMVILSAVIASVVSEV-----GLGS------EP--AFKVPE 341 (766)
Q Consensus 277 Giaa~F~aPi~G~lFa~E~~--~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~-----~~g~------~~--~f~~~~ 341 (766)
|+||+|+||+||++|++||. .|++. +++..++++.+.+++-+. ..|. .. .|.+-+
T Consensus 258 GVaAAF~APvGGvLFaLEE~aS~Wnq~----------L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~ 327 (762)
T KOG0474|consen 258 GVAAAFRAPVGGVLFALEEGASWWNQA----------LLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFD 327 (762)
T ss_pred hHHHHhCCCccceEEEechhhHHHHhh----------HHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccC
Confidence 99999999999999999997 45533 344567777777776551 1222 22 222222
Q ss_pred CC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhccccc--------
Q 004241 342 YD-FRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILY-------- 412 (766)
Q Consensus 342 ~~-~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g-------- 412 (766)
.+ -++.+|++.++++|+++|++|.+|+.++.+...++.+ .++.+..+.+...+..++.+.+++..| .+.
T Consensus 328 ~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af~l~-~l~~C~P~~~~ 405 (762)
T KOG0474|consen 328 GPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAFGLP-FLADCQPCPPS 405 (762)
T ss_pred CccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHhhhH-HHhcCCCCCCC
Confidence 11 1267899999999999999999999997776665554 222222233333344444444443333 100
Q ss_pred ------------CC-HH------------HHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHH
Q 004241 413 ------------WG-FE------------NVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIG 467 (766)
Q Consensus 413 ------------~G-~~------------~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iG 467 (766)
.| |+ .+..+|+.++ +.++...|+.+++..++++..|+|.-.|.|.|.|++.+|
T Consensus 406 ~~~~~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~--~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~G 483 (762)
T KOG0474|consen 406 ITEGQCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPT--NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTG 483 (762)
T ss_pred cccccCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCC--CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhh
Confidence 11 33 3444555442 567888899999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 004241 468 AATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSW 547 (766)
Q Consensus 468 a~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~~ 547 (766)
|+.||++|.++...+ .++|+.||++||||+++|++||++|.+||++|+| +..+++|+|++-++|++
T Consensus 484 Aa~GRlvg~~l~~~~-------------~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~ 549 (762)
T KOG0474|consen 484 AAYGRLVGMLLGSYT-------------NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKT 549 (762)
T ss_pred HHHHHHHHHHHHHhh-------------ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHH
Confidence 999999999998643 3789999999999999999999999999999999 77899999999999999
Q ss_pred HHhhhccCCcchhhHHHhhhccccccchhhccccccCCCCccccccchhhhhhhhhhccccccccchhhhhhhccccccc
Q 004241 548 FTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVS 627 (766)
Q Consensus 548 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~l~~~~~~~~~l~~~~s~~~~~d~~~~~~~~l~~~~V~ 627 (766)
+.|.| ++++||... ++++.| ++. .+.+..+++++++
T Consensus 550 VGD~F--NegiYd~~i----------~LkgvP-----------------~Le---------------~~pe~~mr~L~a~ 585 (762)
T KOG0474|consen 550 VGDSF--NEGIYDIII----------QLKGVP-----------------FLE---------------WEPEPYMRNLTAG 585 (762)
T ss_pred HHhhh--hhhhHHHhh----------hccCCc-----------------ccc---------------CCCchHhhhhhHh
Confidence 99976 899999865 333333 220 1335678899999
Q ss_pred cccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCC-----CcEEEEEehhhHHHHHHHHhhhccc-------------
Q 004241 628 EVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-----NILIGLLTLGDIEEFSKYAQAKTSR------------- 689 (766)
Q Consensus 628 diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~-----g~lvGiVt~~dL~~~l~~~~~~~~~------------- 689 (766)
|+|++++++++..+.+..+.+.++.++|+.+||+|+. +++.|+|-++++...+++....++.
T Consensus 586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~ 665 (762)
T KOG0474|consen 586 EVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFT 665 (762)
T ss_pred hhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCC
Confidence 9999999999999999999999999999999999962 5789999999998877653221100
Q ss_pred ------cchhHhhh----------cccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHH
Q 004241 690 ------SKLLVSEM----------CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRE 753 (766)
Q Consensus 690 ------~~~~V~dv----------m~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~ 753 (766)
....++|+ ++-.+.++..|.+|++++++..+..+|+..+.+|+.||++ .++.+|++||+
T Consensus 666 ~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-----~~~~~gilTR~ 740 (762)
T KOG0474|consen 666 FRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-----TNRVVGILTRK 740 (762)
T ss_pred HHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC-----CCceeEEEehh
Confidence 00112221 1113456668999999999999999999999999999997 77889999999
Q ss_pred HHHHHhh
Q 004241 754 SIILACR 760 (766)
Q Consensus 754 DIl~~~~ 760 (766)
|+.+...
T Consensus 741 D~~~~~~ 747 (762)
T KOG0474|consen 741 DLARYRI 747 (762)
T ss_pred hhhhHHH
Confidence 9986543
No 3
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-70 Score=591.91 Aligned_cols=569 Identities=24% Similarity=0.282 Sum_probs=434.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcC---------------------------Cccccc-cCCCchhHHHHHH
Q 004241 95 SCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYG---------------------------GASWLR-EKPIPAIWIRVVL 146 (766)
Q Consensus 95 ~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~---------------------------~~~~~~-~~~~~~~w~~~~l 146 (766)
.+++|..+|..+.+.+...+| |++-+++..+ -..|.. .......|+++.+
T Consensus 58 ~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~l~y~~ 135 (696)
T KOG0475|consen 58 VLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSYLIYVL 135 (696)
T ss_pred hhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCCCcchHHHHHHHH
Confidence 478888899888888888887 4433322100 000000 0111136766666
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCcchhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHH
Q 004241 147 VPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAV 226 (766)
Q Consensus 147 ~p~~ggl~~g~l~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~ 226 (766)
+-+.-.+++..+.+. . .+...|+||||+|...- .+..+.+++.+++++|.+
T Consensus 136 ~al~fa~la~~lv~~--~--AP~A~gSGIpEIK~ilS-------------------------Gf~~~~~lg~~tl~iKsV 186 (696)
T KOG0475|consen 136 WALLFAFLAVSLVKV--V--APYACGSGIPEIKTILS-------------------------GFIIRGFLGKWTLLIKSV 186 (696)
T ss_pred HHHHHHHHHHHHhhh--e--ehhhhcCCCccceeeec-------------------------cchhhhhhhHHHHhhhhh
Confidence 655555555555432 1 34567888999997521 123366899999999999
Q ss_pred HHHHHhhcCCccCCchhHHHHHHHHHHHHhhhhC---CCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccc
Q 004241 227 AACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFD---RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAA 303 (766)
Q Consensus 227 ~~~lslgsG~s~G~EGP~v~iGa~ig~~l~~~~~---~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~ 303 (766)
+..++++||+|+|||||+||++.++|+.++++|+ .++.++|++++|++|||+|++|||||||++|++|++. +++.
T Consensus 187 al~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~-~~fp- 264 (696)
T KOG0475|consen 187 ALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVS-YYFP- 264 (696)
T ss_pred hheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhh-hcCC-
Confidence 9999999999999999999999999999999886 6788999999999999999999999999999999997 3222
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhh---cCCCCccccCcCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004241 304 DSSASLAYTTSMVILSAVIASVVSEVG---LGSEPAFKVPEYDF-RSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVD 379 (766)
Q Consensus 304 ~~~~~~~~~~~~~~~aa~~a~~v~~~~---~g~~~~f~~~~~~~-~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~ 379 (766)
.+ ..+..++++++|..+.+.. .++++.+...+|+. |++.|+++|+++|++||+.|.+|.|++.++.++++
T Consensus 265 -----~k-tlw~sff~aLsAv~~L~~i~pf~~~~~vLf~V~Y~~~W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK 338 (696)
T KOG0475|consen 265 -----LK-TLWRSFFCALSAVTALRSINPFGNSRLVLFYVDYDRPWSLFELLPFILLGIFGGLWGAFFIRLNIRFCRFRK 338 (696)
T ss_pred -----cc-chHHHHHHHHHHHHHHeeecccCCCceEEEEEeccCCcccccchHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 12 2333567778888777653 23344444445654 37899999999999999999999999988877665
Q ss_pred HHhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccccc---------HHHHHHHHHHHHHHHHHh
Q 004241 380 NLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLT---------ADMLLQLVAAKIVATSLC 450 (766)
Q Consensus 380 ~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~---------~~~l~~~~~~K~~~t~lt 450 (766)
.. + ...++.+.+++++++++++++..|+...++.+.++.+++.++...+.+ ...|+...++|+++|+.|
T Consensus 339 ~~-~-lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ft 416 (696)
T KOG0475|consen 339 SS-K-LGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFT 416 (696)
T ss_pred hh-h-ccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhh
Confidence 54 2 233456778899999999999999999999999999999886544433 556777889999999999
Q ss_pred hhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhC
Q 004241 451 RASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ 530 (766)
Q Consensus 451 ~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg 530 (766)
+|+++|+|+|.||++|||++|+++|.++...++.++ +.....+++.|+.||++||||.++|+||+|+|.+||+||+||
T Consensus 417 fGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~--~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG 494 (696)
T KOG0475|consen 417 FGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPD--FNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTG 494 (696)
T ss_pred hhccCccceecchHHHHHHHHHHHHHHHHHHhcCCC--ccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccC
Confidence 999999999999999999999999988887777533 333345789999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhhhccCCcchhhHHHhhhccccccchhhccccccCCCCccccccchhhhhhhhhhcccccc
Q 004241 531 DYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCI 610 (766)
Q Consensus 531 ~~~~llP~mia~~va~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~l~~~~~~~~~l~~~~s~~~~ 610 (766)
++++++|+|+|+++++|+++.+. +.++||... ++|+||.. ++.+
T Consensus 495 ~l~~IlPlm~av~~SkwI~d~~g-k~gIyda~I----------~~ng~P~l----~~k~--------------------- 538 (696)
T KOG0475|consen 495 ALNYILPLMLAVMISKWIGDGLG-KTGIYDAHI----------ELNGYPFL----DSKS--------------------- 538 (696)
T ss_pred cceeHHHHHHHHHHHHHHHhccc-cchHHHHHH----------HhcCCCCc----cccc---------------------
Confidence 99999999999999999999885 556998865 66777742 1110
Q ss_pred ccchhhhhhhccccccccccccc--eeEEeCC-ccHHHHHHHHHHcCCcEEEEec--CCCcEEEEEehhhHHHHHHHHhh
Q 004241 611 DDWNLEVEELKRRVFVSEVMRTR--YVTVLMT-TLLIEALTLMLAEKQSCAMIVD--NDNILIGLLTLGDIEEFSKYAQA 685 (766)
Q Consensus 611 ~d~~~~~~~~l~~~~V~diM~~~--~~~V~~~-~tl~eal~~m~~~~~~~~pVvd--~~g~lvGiVt~~dL~~~l~~~~~ 685 (766)
... ..-...+.+.++.+ ..++..+ ++++|....|.+++++.+||+- ++++++|+|.++|+...+.+.+.
T Consensus 539 -----e~~-~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~ 612 (696)
T KOG0475|consen 539 -----EFS-STLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARK 612 (696)
T ss_pred -----ccc-cchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcc
Confidence 000 00111222222222 4455544 8999999999999999899874 35789999999999877664332
Q ss_pred hccc--------------------cchhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCc
Q 004241 686 KTSR--------------------SKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQ 745 (766)
Q Consensus 686 ~~~~--------------------~~~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~ 745 (766)
.++. .....+++|+. .|.++..+++.+.+.++|++.+.+++.|.+ +|+
T Consensus 613 ~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~------tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~------~G~ 680 (696)
T KOG0475|consen 613 IQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDM------TPFTVTDLTPMETVVDLFRKLGLRQILVTK------NGI 680 (696)
T ss_pred ccccceecccccCCCCccccCCCCCCcCceeeccC------CcccccccCcHHHHHHHHHhhCceEEEEcc------CCe
Confidence 2110 01224455554 789999999999999999999999998877 799
Q ss_pred EEEEEeHHHHHHHhh
Q 004241 746 LVGLLDRESIILACR 760 (766)
Q Consensus 746 lvGIVt~~DIl~~~~ 760 (766)
+.|+||++|+++.-+
T Consensus 681 l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 681 LLGIITKKDCLRHTR 695 (696)
T ss_pred eEeeeehHHHHHhhc
Confidence 999999999998654
No 4
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=4.7e-62 Score=543.43 Aligned_cols=411 Identities=24% Similarity=0.343 Sum_probs=333.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004241 90 GVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDD 169 (766)
Q Consensus 90 ~~~l~~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~ 169 (766)
+++++++++|+++|+++.+|++++++++++.++... ..+.......++| +++++|++||+++|+++++.... ..
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~--~~ 76 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDS---GSLVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKF--TQ 76 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---cchhhcccccchH-HHHHHHHHHHHHHHHHHHHHccc--cc
Confidence 457888999999999999999999999987665321 1111111112344 57899999999999987643221 12
Q ss_pred CCCcchhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHH
Q 004241 170 DDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGK 249 (766)
Q Consensus 170 ~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa 249 (766)
..+++++++++... .++..+.++.+.|.+++++++++|+|+|||||++|+|+
T Consensus 77 ~~~~g~~~vi~av~----------------------------~~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa 128 (418)
T PRK01610 77 QRPHAPTDYMEALQ----------------------------TDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAA 128 (418)
T ss_pred ccCCCcHHHHHHHH----------------------------cCCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHH
Confidence 22345666554211 11223345678999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHh
Q 004241 250 SIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEV 329 (766)
Q Consensus 250 ~ig~~l~~~~~~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~ 329 (766)
++|++++|+|+ +++++|++++||+|||+||+||||++|++|++|+++.+ +.++.+.+ +++++++|+.+++.
T Consensus 129 ~~g~~~~~~~~-~~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~-------~~~~~~~p-~~ias~~a~~v~~~ 199 (418)
T PRK01610 129 LAASCFAQRFT-PRQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGT-------LMLASLGP-VVISAVVALLTTNL 199 (418)
T ss_pred HHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-------hhHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999998 68899999999999999999999999999999999754 33455555 67899999999998
Q ss_pred hcCCC-CccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhc
Q 004241 330 GLGSE-PAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFP 408 (766)
Q Consensus 330 ~~g~~-~~f~~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P 408 (766)
+.|.+ +.|.++..+..+..++++++++|++||++|.+|+++.++.+++++ +.+.++++++.++|++++++.+++|
T Consensus 200 ~~g~~~~~~~i~~~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~----~~~~~~~~~~~lggli~g~l~~~~p 275 (418)
T PRK01610 200 LNGSDALLYNVQLSVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFV----SLKLAPPWQLALGGLIVGLLSLFTP 275 (418)
T ss_pred HcCCCCCeeecCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccccchhHHHHHHHHHHHHHHHHhh
Confidence 88754 678887554456788999999999999999999998877655443 3334567889999999999999999
Q ss_pred ccccCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCc
Q 004241 409 EILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPT 488 (766)
Q Consensus 409 ~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~ 488 (766)
+.+|+||+.++.+++++ .....++.++++|+++|++|+|+|++||.|+|++++||++|+++|++++..++.
T Consensus 276 ~~~G~G~~~i~~~~~~~-----~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~---- 346 (418)
T PRK01610 276 AVWGNGYSVVQSFLTAP-----PLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPD---- 346 (418)
T ss_pred HHhCCcHHHHHHHHcCC-----hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 99999999999887654 234455667899999999999999999999999999999999999999876553
Q ss_pred cccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCCcchhhHH
Q 004241 489 IHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKV 563 (766)
Q Consensus 489 ~~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~~v~~~~~~~~~~~~~~~ 563 (766)
....+..|+++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++. +.++++|+...
T Consensus 347 ------~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~-~~~~siy~~~~ 414 (418)
T PRK01610 347 ------GEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRT-LRRDSIYRQHT 414 (418)
T ss_pred ------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-hCCCCchHHHH
Confidence 123468999999999999999999999999999999999999999999999998864 46888988753
No 5
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.5e-59 Score=519.93 Aligned_cols=385 Identities=26% Similarity=0.349 Sum_probs=321.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhhc
Q 004241 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (766)
Q Consensus 99 G~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~~~~~~i~~v 178 (766)
|+++|+++.+|+.+++++++++++.... .+.. .....+|++.+++|++||+++++++++.+. .++++||+
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~---~~~~-~~~~~~~~~~~~~~~~ggl~~~l~~~~~~~------~g~gi~~v 70 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEG---SFLT-GVAAVSPIRRALSLTVGGLIAGLGWYLLRR------KGKKLVSI 70 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccc---cchh-hhccCChHHHHHHHHHHHHHHHHHHHHHhc------cCCCcccH
Confidence 6889999999999999999999875321 1111 111224555778899999999988654321 25568887
Q ss_pred cccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHHHHHHHhhh
Q 004241 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (766)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~ig~~l~~~ 258 (766)
++... .++..++++.+.|.+++++++++|+|+|||||++|+|+++|++++|+
T Consensus 71 ~~~~~----------------------------~~~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~ 122 (388)
T cd01033 71 KQAVR----------------------------GKKRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDW 122 (388)
T ss_pred HHHhc----------------------------CCCCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHH
Confidence 65311 11113345667899999999999999999999999999999999999
Q ss_pred hCCCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 004241 259 FDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFK 338 (766)
Q Consensus 259 ~~~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~g~~~~f~ 338 (766)
+++++++||++++||+|||+||+||||++|++|++|+++.++ +.+.+.+ +++++++|+++++.+.|+++.|.
T Consensus 123 ~~~~~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~-------~~~~~~~-~~~as~~a~~v~~~~~g~~~~f~ 194 (388)
T cd01033 123 LGLTVADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTI-------SLRSVVA-ALATSAIAAAVASLLKGDHPIYD 194 (388)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-------cHHHHHH-HHHHHHHHHHHHHHhCCCCceee
Confidence 999999999999999999999999999999999999997653 2345554 67899999999999999999999
Q ss_pred cCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHH
Q 004241 339 VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENV 418 (766)
Q Consensus 339 ~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i 418 (766)
+++++. ++.++++++++|++||+++.+|++++++..++++ +. .+.++++.+++++++++.+++|+.+|+|++.+
T Consensus 195 ~~~~~~-~~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~----~~-~~~~~~~~l~gl~~g~~~~~~p~~~G~G~~~i 268 (388)
T cd01033 195 IPPMQL-STPLLIWALLAGPVLGVVAAGFRRLSQAARAKRP----KG-KRILWQMPLAFLVIGLLSIFFPQILGNGRALA 268 (388)
T ss_pred cCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cc-cchHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 887665 4678889999999999999999998877665432 22 23456788999999999999999999999999
Q ss_pred HHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccc
Q 004241 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (766)
Q Consensus 419 ~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (766)
+.+++++ .+...++.++++|+++|++|+|+|++||+|+|++++||++|+.+|++++..+|+ .+
T Consensus 269 ~~~~~~~-----~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~------------~~ 331 (388)
T cd01033 269 QLAFSTT-----LTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPP------------LS 331 (388)
T ss_pred HHHHcCC-----chHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCc------------cc
Confidence 9988765 345566778899999999999999999999999999999999999999875543 46
Q ss_pred hHHHHHHHHHHHHHHhcCchHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHhhh
Q 004241 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ-DYRIVLPLLGAVGLSSWFTSGQ 552 (766)
Q Consensus 499 p~~~alvGaaa~lag~~~aPls~~viv~Eltg-~~~~llP~mia~~va~~v~~~~ 552 (766)
+..|++|||+|++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.+
T Consensus 332 ~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 332 IAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999 9999999999999999887543
No 6
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-61 Score=532.84 Aligned_cols=497 Identities=18% Similarity=0.259 Sum_probs=379.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 004241 92 IISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDD 171 (766)
Q Consensus 92 ~l~~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~~~ 171 (766)
|++..++|++++++.+.++..|+..++.....+.. +........|+-|...|+.--+..+.+.++ + .+...
T Consensus 96 W~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~-----~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~---i-apQAv 166 (931)
T KOG0476|consen 96 WFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRE-----LGSSHSYLAYLSWVGYPVGLVLFSAGFCHY---I-APQAV 166 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccchhHHHHHHHHHHHHHHHHHHHHHHhe---e-ccccc
Confidence 67889999999999999999999887653221100 001111112222333343322333333222 2 44667
Q ss_pred CcchhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHHH
Q 004241 172 DDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSI 251 (766)
Q Consensus 172 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~i 251 (766)
|+||||+|... .++..+..++.++++.|.++..+++|||+++|+|||+|||++++
T Consensus 167 GSGIPEmKtIl-------------------------rGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasiv 221 (931)
T KOG0476|consen 167 GSGIPEMKTIL-------------------------RGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIV 221 (931)
T ss_pred cCCChhHHHHH-------------------------HhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHH
Confidence 88999999642 12345678888999999999999999999999999999999999
Q ss_pred HHHHhhhhC-------CCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHH
Q 004241 252 AKGVGNLFD-------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIAS 324 (766)
Q Consensus 252 g~~l~~~~~-------~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~ 324 (766)
++.+++... -|+.+..+|+++|||.|+|+.|.||+|||||++|++..+ +..+|++- .++|+.+++
T Consensus 222 A~~l~k~~a~~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~y-------FAVrnYWR-GFFAAtcsA 293 (931)
T KOG0476|consen 222 AALLSKVTACQFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTY-------FAVRNYWR-GFFAATCSA 293 (931)
T ss_pred HHHHHHHHHhhccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeee-------eeHHHHHH-HHHHHHhHH
Confidence 999988632 466777799999999999999999999999999999765 34577775 588999999
Q ss_pred HHHHhhc---C-CC----Ccccc--C-cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhcCC
Q 004241 325 VVSEVGL---G-SE----PAFKV--P-EYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIV------DNLQKDNGI 387 (766)
Q Consensus 325 ~v~~~~~---g-~~----~~f~~--~-~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~------~~~~~~~~~ 387 (766)
++.|++- - .+ .+|+. + +++| .+.|+++|+++|++||++|.+|+++.+...-+. +.++.+
T Consensus 294 ~vFR~lavf~v~~~~tItA~yqT~F~~d~~F-~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k--- 369 (931)
T KOG0476|consen 294 FVFRLLAVFFVEAEVTITALYQTSFRPDFPF-DVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQK--- 369 (931)
T ss_pred HHHHHHHHHcccchhhhHHHHhccCCCCCCC-CHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhh---
Confidence 9887532 1 11 23433 2 3444 689999999999999999999988665543222 222222
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccC---C----HHHHHHHHccCCCcc---------------------ccc-HHHHHH
Q 004241 388 PKAVFPVMGGLAVGLIALMFPEILYW---G----FENVDILLESRPFVK---------------------GLT-ADMLLQ 438 (766)
Q Consensus 388 ~~~~~~~lggllvg~i~~~~P~~~g~---G----~~~i~~ll~~~~~~~---------------------~~~-~~~l~~ 438 (766)
.+.++|++.+++++.+ -||..+|. | .+++.++|+|+.|.. ..+ ...|+.
T Consensus 370 ~~llyp~~~a~v~ssl--tfP~GlG~f~aG~l~f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~l 447 (931)
T KOG0476|consen 370 SRLLYPAFIALVFSSL--TFPPGLGQFLAGRLSFRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVL 447 (931)
T ss_pred CccHHHHHHHHHHhhe--ecCCcccccccccccHHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHH
Confidence 4567788887777744 57876663 3 467888888875421 111 235778
Q ss_pred HHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCcccc-ccccccchHHHHHHHHHHHHHHhcCc
Q 004241 439 LVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF-SILEVASPQAYGLVGMAATLAGVCQV 517 (766)
Q Consensus 439 ~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~-~~~~~~~p~~~alvGaaa~lag~~~a 517 (766)
+.++||+.+.+|....+|.|.|+|.++|||++||++|+.+..+||.. ++. .+.+.+.|+.||++|||||.+++|+
T Consensus 448 f~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~G---i~~~gi~~~I~PG~YAVVGAAAfsGaVTH- 523 (931)
T KOG0476|consen 448 FFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEG---IRGGGITPPIHPGGYAVVGAAAFSGAVTH- 523 (931)
T ss_pred HHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccc---cccCCccCccccchhhhhhhhhhccceee-
Confidence 89999999999999999999999999999999999999999888862 111 2235689999999999999999999
Q ss_pred hHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCCcchhhHHHhhhccccccchhhccccccCCCCccccccchhh
Q 004241 518 PLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPY 597 (766)
Q Consensus 518 Pls~~viv~Eltg~~~~llP~mia~~va~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~l~~~~~~ 597 (766)
++|.+||+||+||+...++|+|||+++|+.|++.+ ..++||++. .+ ++.||
T Consensus 524 TvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~L--QPSiYDSII----------~I-----------------KklPY 574 (931)
T KOG0476|consen 524 TVSVAVIIFELTGQLCHILPVMIAVLLANAVAASL--QPSIYDSII----------RI-----------------KKLPY 574 (931)
T ss_pred eeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHh--Ccchhhhee----------ee-----------------ccCCc
Confidence 69999999999999999999999999999998755 789999875 22 35566
Q ss_pred hhhhhhhccccccccchhhhhhhccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecC--CCcEEEEEehhh
Q 004241 598 AINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN--DNILIGLLTLGD 675 (766)
Q Consensus 598 ~~~l~~~~s~~~~~d~~~~~~~~l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~--~g~lvGiVt~~d 675 (766)
++++-. .+...+.++|+|+|.+++..+..++|.+|..+.+..+..+.+|+||+ +..++|.|.+++
T Consensus 575 LPDlpp-------------s~~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~ 641 (931)
T KOG0476|consen 575 LPDLPP-------------SRSSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRY 641 (931)
T ss_pred CCCCCC-------------cccceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHH
Confidence 666531 23456778999999999999999999999999998888999999996 456899999999
Q ss_pred HHHHHHH
Q 004241 676 IEEFSKY 682 (766)
Q Consensus 676 L~~~l~~ 682 (766)
+...+++
T Consensus 642 L~~ll~~ 648 (931)
T KOG0476|consen 642 LTALLQR 648 (931)
T ss_pred HHHHHHh
Confidence 9877654
No 7
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=2e-58 Score=518.68 Aligned_cols=409 Identities=22% Similarity=0.278 Sum_probs=324.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhhc
Q 004241 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (766)
Q Consensus 99 G~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~~~~~~i~~v 178 (766)
|+++|+++..+++.++++.+++.+.. +|..+++++++++++++++.++ . .+...|+||||+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~i~~~l~~~--~--~p~a~GsGIp~v 61 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC---------------NYIIYVLLALLFAFIAVLLVKV--V--APYAAGSGIPEI 61 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHh--c--CccccCCCHHHH
Confidence 78999999999999999998875421 3433567888889989888542 2 344567889999
Q ss_pred cccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHHHHHHHhhh
Q 004241 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (766)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~ig~~l~~~ 258 (766)
++.. +++ +.++..+.++.+.|++++++++++|+|+|||||++|+|+++|++++|+
T Consensus 62 ~~~l--~g~-----------------------~~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~ 116 (445)
T cd03684 62 KTIL--SGF-----------------------IIRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRL 116 (445)
T ss_pred HHHH--cCc-----------------------cccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHH
Confidence 7531 111 112345567889999999999999999999999999999999999998
Q ss_pred hC---CCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHhh----c
Q 004241 259 FD---RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVG----L 331 (766)
Q Consensus 259 ~~---~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~----~ 331 (766)
|+ .++++||++++||+|||++|+||||++|++|++|++..++ +.+.+++ +++++++|+++.+.+ .
T Consensus 117 ~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~-------~~~~l~~-~~~as~~a~~v~~~~~~~~~ 188 (445)
T cd03684 117 FPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYF-------PLKTLWR-SFFCALVAAFTLKSLNPFGT 188 (445)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhc-------cHHHHHH-HHHHHHHHHHHHHHhcccCC
Confidence 74 6889999999999999999999999999999999997642 2345554 688999999988864 2
Q ss_pred CCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccc
Q 004241 332 GSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEIL 411 (766)
Q Consensus 332 g~~~~f~~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~ 411 (766)
++...|+++....++..|+++++++|++||++|.+|++++.++.+++++... +.++++++.++++++++++++.|+..
T Consensus 189 ~~~~~f~~~~~~~~~~~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~ 266 (445)
T cd03684 189 GRLVLFEVEYDRDWHYFELIPFILLGIFGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTR 266 (445)
T ss_pred CCceEEeccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHc
Confidence 3444555543222356789999999999999999999999887776654421 23567889999999999999999999
Q ss_pred cCCHHHHHHHHccCCCc--------------cc--ccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHH
Q 004241 412 YWGFENVDILLESRPFV--------------KG--LTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYG 475 (766)
Q Consensus 412 g~G~~~i~~ll~~~~~~--------------~~--~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g 475 (766)
++|++.++.+++++... +. .+...++.++++|+++|++|+|+|+|||.|+|++++||++|+++|
T Consensus 267 ~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g 346 (445)
T cd03684 267 LDMTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVG 346 (445)
T ss_pred cchhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHH
Confidence 99999999888653100 00 123456667899999999999999999999999999999999999
Q ss_pred HHHHHhh---hcCCCcccc--ccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHh
Q 004241 476 KFINFAI---AQSNPTIHF--SILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTS 550 (766)
Q Consensus 476 ~~~~~~~---~~~~~~~~~--~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~~v~~ 550 (766)
.+++.+. |+.. .+.. +..+..+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++
T Consensus 347 ~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~ 425 (445)
T cd03684 347 ILVEQLAYSYPDSI-FFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVAD 425 (445)
T ss_pred HHHHHHHhhCCccc-ccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHH
Confidence 9998653 2100 0000 00023678999999999999999999999999999999999999999999999999886
Q ss_pred hhccCCcchhhHH
Q 004241 551 GQMRRRDVKETKV 563 (766)
Q Consensus 551 ~~~~~~~~~~~~~ 563 (766)
. +.++++||...
T Consensus 426 ~-~~~~siY~~~l 437 (445)
T cd03684 426 A-IGKEGIYDAHI 437 (445)
T ss_pred H-hCCCCHHHHHH
Confidence 4 45789999865
No 8
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=5.3e-57 Score=508.39 Aligned_cols=413 Identities=25% Similarity=0.391 Sum_probs=330.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 004241 93 ISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDD 172 (766)
Q Consensus 93 l~~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~~~~ 172 (766)
++++++|+++|+++.+|+++++++++++++..+.. ...+ ...|...++++.+++++++++.+. . .+...|
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~~l~~~--~--~p~~~G 71 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASV-----ADNG-LLLWIVAFLISAVLAMIGYFLVRR--F--APEAGG 71 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccc-hHHHHHHHHHHHHHHHHHHHHHHh--c--CcccCC
Confidence 57899999999999999999999999987643210 0000 012222233444555555555322 2 234456
Q ss_pred cchhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHHHH
Q 004241 173 DDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIA 252 (766)
Q Consensus 173 ~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~ig 252 (766)
+|+||+++..... +.....++...|++++++++++|+|+|||||++|+|+++|
T Consensus 72 sGi~~i~~~l~~~---------------------------~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig 124 (438)
T PRK05277 72 SGIPEIEGALEGL---------------------------RPVRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIG 124 (438)
T ss_pred CCHHHHHHHHcCC---------------------------CccchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Confidence 7799887532100 1111234567899999999999999999999999999999
Q ss_pred HHHhhhhCC-CchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHhhc
Q 004241 253 KGVGNLFDR-RPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGL 331 (766)
Q Consensus 253 ~~l~~~~~~-~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~ 331 (766)
+++++++++ +++++|++++||+|||++++||||++|++|++|++..+.. ++.+++.+ +++++++|+.+.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~-----~~~~~~~~-~~~a~~~a~~v~~~~~ 198 (438)
T PRK05277 125 RMVLDIFRLRSDEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFR-----YSLISIKA-VFIGVIMATIVFRLFN 198 (438)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhcc-----ccHHHHHH-HHHHHHHHHHHHHHhc
Confidence 999999998 8889999999999999999999999999999999864310 22344444 5789999999999989
Q ss_pred CCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccc
Q 004241 332 GSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEIL 411 (766)
Q Consensus 332 g~~~~f~~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~ 411 (766)
|+++.|+++.++..+..+++.++++|++||++|.+|++++.+.++++++++++.+++.++...+++++++++.+++|+..
T Consensus 199 g~~~~~~~~~~~~~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~~ 278 (438)
T PRK05277 199 GEQAVIEVGKFSAPPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAAV 278 (438)
T ss_pred CCCceEeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999988876655677899999999999999999999998888776654432222223344677888888899999999
Q ss_pred cCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCcccc
Q 004241 412 YWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF 491 (766)
Q Consensus 412 g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~ 491 (766)
|+|++.++..++++ .+...++.++++|+++|++|+|+|++||.|+|++++||++|+++|++++.++|.
T Consensus 279 g~G~~~i~~~~~~~-----~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~------- 346 (438)
T PRK05277 279 GGGFNLIPIALAGN-----FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQ------- 346 (438)
T ss_pred CChHHHHHHHHcCC-----chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------
Confidence 99999999988764 355566778899999999999999999999999999999999999999887664
Q ss_pred ccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCCcchhhHHH
Q 004241 492 SILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVA 564 (766)
Q Consensus 492 ~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~~v~~~~~~~~~~~~~~~~ 564 (766)
...+|..|+++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++. +.++++||....
T Consensus 347 ---~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~-~~~~~iy~~~l~ 415 (438)
T PRK05277 347 ---YHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQF-LGGKPIYSALLE 415 (438)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH-hCCCChHHHHHH
Confidence 235789999999999999999999999999999999999999999999999998765 567899998654
No 9
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=3e-57 Score=505.66 Aligned_cols=400 Identities=27% Similarity=0.438 Sum_probs=333.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhh
Q 004241 98 VGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQ 177 (766)
Q Consensus 98 vG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~~~~~~i~~ 177 (766)
+|+++|+++.+|+++++++++++++..+.. . .....|++++++|.++|++++++.++. .+...|+|+|+
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~g~~~~~l~~~~----~p~~~g~G~~~ 69 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFA-----A--NNPPLLLVLPLISAVLGLLAGWLVKKF----APEAKGSGIPQ 69 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhc-----c--cccHHHHHHHHHHHHHHHHHHHHHHhc----CCccCCCCHHH
Confidence 589999999999999999999988743211 0 111234446677888888888875431 22334567888
Q ss_pred ccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHHHHHHHhh
Q 004241 178 VQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGN 257 (766)
Q Consensus 178 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~ig~~l~~ 257 (766)
+++....+ ......++.+.|++++++++++|+|+|||||++|+|+++|+++++
T Consensus 70 v~~~l~~~---------------------------~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~ 122 (402)
T cd01031 70 VEGVLAGL---------------------------LPPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK 122 (402)
T ss_pred HHHHHcCC---------------------------CCcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH
Confidence 87532100 112234577899999999999999999999999999999999999
Q ss_pred hhCCCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 004241 258 LFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAF 337 (766)
Q Consensus 258 ~~~~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~g~~~~f 337 (766)
+++.++.++|++++||+|||++++||||++|++|++|++..++ +.+.+. ++++++++|+++++.+.|+++.|
T Consensus 123 ~~~~~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~-------~~~~~~-~~~~a~~~a~~v~~~~~~~~~~~ 194 (402)
T cd01031 123 WFKTSPEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSF-------SPLALL-TALVASIAADFVSRLFFGLGPVL 194 (402)
T ss_pred HhcCCHHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhC-------CHHHHH-HHHHHHHHHHHHHHHHcCCCceE
Confidence 9999999999999999999999999999999999999986542 223444 46889999999999889999999
Q ss_pred ccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHH
Q 004241 338 KVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFEN 417 (766)
Q Consensus 338 ~~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~ 417 (766)
.+++++.+++.|+++++++|++||++|.+|++++.+..+++++.+ +.++++++.+++++++++.+++|+.+|+|++.
T Consensus 195 ~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~---~~~~~~~~~l~gl~~~~~~~~~p~~~g~G~~~ 271 (402)
T cd01031 195 SIPPLPALPLKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK---KLPRELRVLLPGLLIGPLGLLLPEALGGGHGL 271 (402)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCChhHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 888666557789999999999999999999998888776655432 34567889999999999999999999999999
Q ss_pred HHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCcccccccccc
Q 004241 418 VDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVA 497 (766)
Q Consensus 418 i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~ 497 (766)
++.+++++ .+...++.+++.|+++|++|+++|++||.|+|++++||++|+++|++++..+|. ...
T Consensus 272 i~~~~~~~-----~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~----------~~~ 336 (402)
T cd01031 272 ILSLAGGN-----FSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPI----------PIS 336 (402)
T ss_pred HHHHHcCC-----chHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCc----------ccc
Confidence 98887653 456677778899999999999999999999999999999999999999977664 246
Q ss_pred chHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCCcchhhH
Q 004241 498 SPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETK 562 (766)
Q Consensus 498 ~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~~v~~~~~~~~~~~~~~ 562 (766)
+|+.|+++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ .++++||..
T Consensus 337 ~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~-~~~siY~~~ 400 (402)
T cd01031 337 APATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLL-GGKPIYEAL 400 (402)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHh-CCCChhHHH
Confidence 7999999999999999999999999999999999999999999999999988654 588898874
No 10
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-55 Score=492.77 Aligned_cols=407 Identities=31% Similarity=0.453 Sum_probs=322.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 004241 91 VIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDD 170 (766)
Q Consensus 91 ~~l~~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~~ 170 (766)
.+..+.++|+++|+....++....+.+....+. ........+| +++++|+.+|++++. +.+....|+ .
T Consensus 22 ~i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~l~~~~~gl~~g~-~~~~~~~p~--~ 89 (443)
T COG0038 22 LIGIAAALGVIVGLFAVALDLALLLLGRLRGGL--------LSAAQAPGPW-LLPLVPALGGLLVGA-LLVYKFAPE--A 89 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--------ccccccchhH-HHHHHHHHHHHHHHH-HHHHHhCcc--c
Confidence 344455555555555555555544443332111 0000111234 467889999999995 222233223 3
Q ss_pred CCcchhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHH
Q 004241 171 DDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKS 250 (766)
Q Consensus 171 ~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~ 250 (766)
.|+|+||+++... ..+...+++...+|.+++.+++++|+|+|||||++|+|++
T Consensus 90 ~g~Gi~~~i~a~~---------------------------~~~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~ 142 (443)
T COG0038 90 RGSGIPQAIEALH---------------------------GRKGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAA 142 (443)
T ss_pred cCCChhHHHHHHh---------------------------cCCCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHH
Confidence 4566888875321 1122334456677999999999999999999999999999
Q ss_pred HHHHHhhhhCCCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 004241 251 IAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVG 330 (766)
Q Consensus 251 ig~~l~~~~~~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~ 330 (766)
+|+.++++++.+++++|++++||+|||+||+||||++|++|++|+++.++ ++.+++.| +++++++|..+.+.+
T Consensus 143 ~g~~~~~~l~~~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~------~~~~~l~p-~~vaa~va~~v~~~~ 215 (443)
T COG0038 143 IGSLLGRLLKLSREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRF------LEYRALVP-VLVAAVVALLVAGLF 215 (443)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhc------ccHHHHHH-HHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998763 23456665 678999999999988
Q ss_pred cCCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhccc
Q 004241 331 LGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEI 410 (766)
Q Consensus 331 ~g~~~~f~~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~ 410 (766)
.+..+.+.+++++..++++++.++++|+++|++|.+|.++.... ++++++.+.++++++++++++++.+.+++|+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~g~~~l~~P~~ 291 (443)
T COG0038 216 GGPHFLLPIVTTPHMSLWDLLLYLVLGIIAGLFGVLLSRLLALS----RRFFRRLPLPPLLRPALGGLLVGALGLLFPEV 291 (443)
T ss_pred CCCCceeeccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCcchHHHHHHHHHHHHHHHHHhchhh
Confidence 88777777766665678899999999999999999999987544 44555566677899999999999999999999
Q ss_pred ccCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccc
Q 004241 411 LYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIH 490 (766)
Q Consensus 411 ~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~ 490 (766)
+|+|++.++...+++ .....+..+++.|+++|++|+|||++||+|+|++++||++|.++|++++..++.
T Consensus 292 lg~G~~~~~~~~~~~-----~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~------ 360 (443)
T COG0038 292 LGNGYGLIQLALAGE-----GGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPP------ 360 (443)
T ss_pred hCCCccHHHHHHccC-----ccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCc------
Confidence 999999999888775 233225678999999999999999999999999999999999999999987664
Q ss_pred cccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCCcchhhHH
Q 004241 491 FSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKV 563 (766)
Q Consensus 491 ~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~~v~~~~~~~~~~~~~~~ 563 (766)
...++..|+++||++++++++|+|+|++++++||||+++.++|+|+++++++++++... ..++|+...
T Consensus 361 ----~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~-~~~~~~~~~ 428 (443)
T COG0038 361 ----SILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLG-GRPIYTQLL 428 (443)
T ss_pred ----cccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 13567899999999999999999999999999999999999999999999999887654 577777654
No 11
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=1.6e-56 Score=505.52 Aligned_cols=397 Identities=20% Similarity=0.301 Sum_probs=296.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004241 88 NSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSL 167 (766)
Q Consensus 88 ~~~~~l~~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~ 167 (766)
....|+.++++|+++|+++++|+.+++++++++++... .+..+......|..++++|+++|++++++.++. .
T Consensus 29 ~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~----~ 100 (466)
T cd03685 29 EFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVK----NYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYI----A 100 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 34557788999999999999999999999999765421 011111111234445578899999999886532 2
Q ss_pred CCCCCcchhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHH
Q 004241 168 DDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (766)
Q Consensus 168 ~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~i 247 (766)
+...|+|+||+++. .++. +..+..+.++.+.|++++++++++|+|+|||||++|+
T Consensus 101 p~a~GsGip~v~~~--l~g~-----------------------~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~i 155 (466)
T cd03685 101 PTAAGSGIPEVKGY--LNGV-----------------------KIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHI 155 (466)
T ss_pred cccCCCCHHHHHHH--HcCc-----------------------CccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchH
Confidence 34557789998862 2211 1122345667889999999999999999999999999
Q ss_pred HHHHHHHHhhh-----------hC--CCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHH
Q 004241 248 GKSIAKGVGNL-----------FD--RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTS 314 (766)
Q Consensus 248 Ga~ig~~l~~~-----------~~--~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~ 314 (766)
||++|++++++ ++ .+++++|++++||+|||+|++||||++|++|++|++...+.. +. ..
T Consensus 156 Ga~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~-------~~-~~ 227 (466)
T cd03685 156 GACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQ-------AL-TW 227 (466)
T ss_pred HHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcch-------hH-HH
Confidence 99999999973 22 367899999999999999999999999999999998643211 11 12
Q ss_pred HHHHHHHHHHHHHHhhc---C--CCCcc--------ccCc-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004241 315 MVILSAVIASVVSEVGL---G--SEPAF--------KVPE-YDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDN 380 (766)
Q Consensus 315 ~~~~aa~~a~~v~~~~~---g--~~~~f--------~~~~-~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~ 380 (766)
..++++++|+++++... + ....| ..+. ...+++.|+++++++|++||++|.+|++.+.++.+++++
T Consensus 228 ~~l~~s~ias~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~ 307 (466)
T cd03685 228 RTFFSSMIVTFTLNFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKR 307 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455555555544321 1 11222 2221 112356789999999999999999999998888776654
Q ss_pred HhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCcccee
Q 004241 381 LQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYY 460 (766)
Q Consensus 381 ~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f 460 (766)
..+. +++.+ .+++++++++...++. ...+..++++|+++|++|+|+|+|||+|
T Consensus 308 ~~~~---~~~~~-~l~~~lv~~~~~~~~~-----------------------~~~l~~~~~~k~l~t~lt~gsG~~GGif 360 (466)
T cd03685 308 INHK---GKLLK-VLEALLVSLVTSVVAF-----------------------PQTLLIFFVLYYFLACWTFGIAVPSGLF 360 (466)
T ss_pred hccc---cchhH-HHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 3321 22222 4555555554332221 0134556678999999999999999999
Q ss_pred chHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHH
Q 004241 461 APSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLG 540 (766)
Q Consensus 461 ~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mi 540 (766)
+|++++||++|+++|.+++.+++. +..+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+
T Consensus 361 ~Psl~iGA~~G~~~g~~~~~~~~~----------~~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~~~~l~pl~i 430 (466)
T cd03685 361 IPMILIGAAYGRLVGILLGSYFGF----------TSIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIML 430 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc----------cCCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCChhhHHHHHH
Confidence 999999999999999999876543 2467899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCcchhhHHH
Q 004241 541 AVGLSSWFTSGQMRRRDVKETKVA 564 (766)
Q Consensus 541 a~~va~~v~~~~~~~~~~~~~~~~ 564 (766)
++++|+++++.+ ++++||....
T Consensus 431 a~~iA~~va~~~--~~siY~~~l~ 452 (466)
T cd03685 431 VLMIAKWVGDYF--NEGIYDIIIQ 452 (466)
T ss_pred HHHHHHHHHHHh--CCCHHHHHHH
Confidence 999999998864 5799998764
No 12
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=9.1e-56 Score=491.16 Aligned_cols=387 Identities=28% Similarity=0.375 Sum_probs=313.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhhccccC
Q 004241 103 GIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKS 182 (766)
Q Consensus 103 Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~~~~~~i~~v~~~~ 182 (766)
|+++..|+++++++++++++... . .+|+.+++.|+.|+++.+++.++ .+...|+|+||+++..
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~p~~~~~~~~~~~~~-----~p~~~gsGi~~v~~~~ 63 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTA--------T----HPWLPLLLTPAGFALIAWLTRRF-----FPGAAGSGIPQVIAAL 63 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH--------h----chHHHHHHHHHHHHHHHHHHHhh-----CCCCCCCCHHHHHHHH
Confidence 57889999999999999875321 1 23544567788887777776542 2334567899988532
Q ss_pred CCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHHHHHHHhhhhCCC
Q 004241 183 YPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRR 262 (766)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~ 262 (766)
.... ..+..+..+.++.+.|++++++++++|+|+|||||++|+|+++|++++|++++.
T Consensus 64 ~~~~----------------------~~~~~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~ 121 (390)
T cd01034 64 ELPS----------------------AAARRRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKW 121 (390)
T ss_pred cccc----------------------cccccccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccC
Confidence 1000 001123456678899999999999999999999999999999999999999985
Q ss_pred -chhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHhhcCCCCccccCc
Q 004241 263 -PRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFKVPE 341 (766)
Q Consensus 263 -~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~g~~~~f~~~~ 341 (766)
++++|++++||+|||+||+||||++|++|++|+++.++ ..+... .+++++++|.++.+.++|+++.|.+++
T Consensus 122 ~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~-------~~~~~~-~~~~~~~~a~~~~~~~~g~~~~f~~~~ 193 (390)
T cd01034 122 GGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRDF-------ELRFSG-LVLLAVIAAGLVSLAVLGNYPYFGVAA 193 (390)
T ss_pred chHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhhh-------hHHHHH-HHHHHHHHHHHHHHHHcCCCCccCCCC
Confidence 79999999999999999999999999999999997642 223333 356788888888888899999998886
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchhHHHHHHHHHHHHHHHHhc-ccccCCHHHHH
Q 004241 342 YDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKD-NGIPKAVFPVMGGLAVGLIALMFP-EILYWGFENVD 419 (766)
Q Consensus 342 ~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~lggllvg~i~~~~P-~~~g~G~~~i~ 419 (766)
.+..++.+++.++++|++||++|.+|++.+.++.+++++.++. .+.++++++.+++++++++.+++| +.+|+|++.++
T Consensus 194 ~~~~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~G~G~~~i~ 273 (390)
T cd01034 194 VALPLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLTFGTGYLQAR 273 (390)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCccccCcHHHHH
Confidence 5545677888999999999999999999988888777664322 223445667788888888888775 78899999999
Q ss_pred HHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccch
Q 004241 420 ILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASP 499 (766)
Q Consensus 420 ~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p 499 (766)
++++++. . ..+.++++|+++|.+|+++|+|||+|+|++++||++|++++++++. .+|
T Consensus 274 ~~~~~~~---~----~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~~----------------~~~ 330 (390)
T cd01034 274 AALEGGG---G----LPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGS----------------VSQ 330 (390)
T ss_pred HHHhCCC---c----ccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhcC----------------CCc
Confidence 9887641 1 2234678999999999999999999999999999999999987642 368
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCCcchh
Q 004241 500 QAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKE 560 (766)
Q Consensus 500 ~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~~v~~~~~~~~~~~~ 560 (766)
..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+ ..+++||
T Consensus 331 ~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~-~~~~iY~ 390 (390)
T cd01034 331 GALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLV-CPEPLYH 390 (390)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHh-CCCCCCC
Confidence 89999999999999999999999999999999999999999999999988765 5677775
No 13
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=3.1e-55 Score=489.71 Aligned_cols=388 Identities=22% Similarity=0.260 Sum_probs=301.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhhc
Q 004241 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (766)
Q Consensus 99 G~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~~~~~~i~~v 178 (766)
|+++|+++.+|++++++.++++.+.+... ..+ ....|..+++.|++++++++.+.++. .+...|+||||+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~----~p~a~GsGIp~v 70 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI-----PGS-YLLGYLMWVLWSVVLVLISSGICLYF----APQAAGSGIPEV 70 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc-----ccc-hHHHHHHHHHHHHHHHHHHHHHHHhc----CcccCCCCHHHH
Confidence 67888999999999999988876543211 011 11234435677888888877775432 334566789999
Q ss_pred cccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHHHHHHHhhh
Q 004241 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (766)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~ig~~l~~~ 258 (766)
++.. +++ +..+..+.++.+.|++++++++++|+|+|||||++|+|+++|++++++
T Consensus 71 ~~~l--~g~-----------------------~~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~ 125 (416)
T cd01036 71 MAYL--NGV-----------------------HLPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQG 125 (416)
T ss_pred HHHH--cCC-----------------------cccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhh
Confidence 8631 110 112345667889999999999999999999999999999999999997
Q ss_pred hC-------------CCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHH
Q 004241 259 FD-------------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (766)
Q Consensus 259 ~~-------------~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~ 325 (766)
++ .+++++|++++||+|||+||+||||++|++|++|++..++ +.+... ++++++++|++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~-------~~~~~~-~~~~as~~a~~ 197 (416)
T cd01036 126 RSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFF-------PVRLAW-RVFFAALVSAF 197 (416)
T ss_pred cccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccc-------cHHHHH-HHHHHHHHHHH
Confidence 64 4678899999999999999999999999999999996542 224444 46789999999
Q ss_pred HHHhhcCCCCccc--------------cCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchh
Q 004241 326 VSEVGLGSEPAFK--------------VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKD-NGIPKA 390 (766)
Q Consensus 326 v~~~~~g~~~~f~--------------~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~ 390 (766)
+.+...+..+.+. ++..+.++..|+++++++|++||++|.+|++++.++.+++++..+. .+.+++
T Consensus 198 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 277 (416)
T cd01036 198 VIQIYNSFNSGFELLDRSSAMFLSLTVFELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRV 277 (416)
T ss_pred HHHHhccccCCccccccccccceeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Confidence 9887766543332 2211223567899999999999999999999999888877664332 334567
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHH
Q 004241 391 VFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAAT 470 (766)
Q Consensus 391 ~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~ 470 (766)
+++.+++++++++.+ ...++.+++.|+++|++|+++|+|||+|+|++++||++
T Consensus 278 ~~~~~~~~i~~~~~~---------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~ 330 (416)
T cd01036 278 LEPVLFTLIYSTIHY---------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAI 330 (416)
T ss_pred HHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 789999999887764 11345678899999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHh
Q 004241 471 GMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTS 550 (766)
Q Consensus 471 G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~~v~~ 550 (766)
|+++|.+++.++|+..+..+. ....+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++
T Consensus 331 G~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~ 408 (416)
T cd01036 331 GRLVGLLVHRIAVAGIGAESA--TLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVAD 408 (416)
T ss_pred HHHHHHHHHHHcccccccccc--CCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHH
Confidence 999999999876631110000 023678999999999999999999999999999999999999999999999999988
Q ss_pred hhccCCcchh
Q 004241 551 GQMRRRDVKE 560 (766)
Q Consensus 551 ~~~~~~~~~~ 560 (766)
.+. +++||
T Consensus 409 ~~~--~siY~ 416 (416)
T cd01036 409 AFC--ESLYH 416 (416)
T ss_pred hhC--CCCCC
Confidence 653 78886
No 14
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=3.9e-55 Score=489.95 Aligned_cols=397 Identities=19% Similarity=0.252 Sum_probs=304.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 004241 92 IISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDD 171 (766)
Q Consensus 92 ~l~~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~~~ 171 (766)
|+..+++|+++|+++..++..++++++++....... .+++ ...|+.++++|++++++++++.++ . .+...
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~~~~l~~~--~--~p~a~ 71 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLL-----TGNS-LLQYLVWVAYPVALVLFSALFCKY--I--SPQAV 71 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccch-HHHHHHHHHHHHHHHHHHHHHHHh--c--CCccC
Confidence 456789999999999999999999988765432110 1111 123444567899999988888642 1 34456
Q ss_pred CcchhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHHH
Q 004241 172 DDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSI 251 (766)
Q Consensus 172 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~i 251 (766)
|+||||+++... ++ +..+..+.++.+.|++++++++++|+|+|||||++|+|+++
T Consensus 72 GsGIp~v~~~l~--g~-----------------------~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i 126 (426)
T cd03683 72 GSGIPEMKTILR--GV-----------------------VLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIV 126 (426)
T ss_pred CCCHHHHHHHHc--CC-----------------------CccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHH
Confidence 788999975211 00 11234556788999999999999999999999999999999
Q ss_pred HHHHhhhhC------CCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHH
Q 004241 252 AKGVGNLFD------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (766)
Q Consensus 252 g~~l~~~~~------~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~ 325 (766)
++.++|+++ .++.+||++++||+|||+||+||||++|++|++|++..++ +.+.+++ ++++|++|++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~-------~~~~~~~-~~i~s~~a~~ 198 (426)
T cd03683 127 AALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYF-------AVRNYWR-GFFAATCGAF 198 (426)
T ss_pred HHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhc-------cHHHHHH-HHHHHHHHHH
Confidence 999999874 3667888999999999999999999999999999997643 2244444 5788888888
Q ss_pred HHHhhc----CCCCc---cccCc--CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCchhHHH
Q 004241 326 VSEVGL----GSEPA---FKVPE--YDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKD---NGIPKAVFP 393 (766)
Q Consensus 326 v~~~~~----g~~~~---f~~~~--~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~---~~~~~~~~~ 393 (766)
+++... ++.+. |..+. ...++..+++.++++|++||++|.+|++++.++.+++++..+. .+.++++++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (426)
T cd03683 199 TFRLLAVFFSDQETITALFKTTFFVDFPFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYP 278 (426)
T ss_pred HHHHHHhhcCCCccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHH
Confidence 776532 33332 32221 1113567899999999999999999999998888776654321 233566788
Q ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHH
Q 004241 394 VMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMA 473 (766)
Q Consensus 394 ~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~ 473 (766)
.+++++++.+. +| ...++.+.++|+++|++|+|+|+|||+|.|++++||++|++
T Consensus 279 ~~~g~~~~~l~--~p------------------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~ 332 (426)
T cd03683 279 AIVALLTAVLT--FP------------------------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRL 332 (426)
T ss_pred HHHHHHHHHHH--HH------------------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHH
Confidence 88888887653 45 11355678899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhc
Q 004241 474 YGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQM 553 (766)
Q Consensus 474 ~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~~v~~~~~ 553 (766)
+|.+++.++|.... . ......+|+.|+++||+|++++++|+|.++ ++++|+||++++++|+|+++++|+++++.+
T Consensus 333 ~g~~~~~~~p~~~~--~-~~~~~~~~~~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~- 407 (426)
T cd03683 333 VGEIMAVLFPEGIR--G-GISNPIGPGGYAVVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFL- 407 (426)
T ss_pred HHHHHHHHcCcccc--c-CCCCCcCchHHHHHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhh-
Confidence 99999877651000 0 000235789999999999999999997765 699999999999999999999999998865
Q ss_pred cCCcchhhHH
Q 004241 554 RRRDVKETKV 563 (766)
Q Consensus 554 ~~~~~~~~~~ 563 (766)
++++||...
T Consensus 408 -~~~iY~~~l 416 (426)
T cd03683 408 -QPSIYDSII 416 (426)
T ss_pred -CCCHHHHHH
Confidence 469999876
No 15
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=1e-54 Score=477.31 Aligned_cols=350 Identities=35% Similarity=0.568 Sum_probs=280.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcchhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHH
Q 004241 150 CGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAAC 229 (766)
Q Consensus 150 ~ggl~~g~l~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~ 229 (766)
++|+++++++++. .+...|+|+||+++... ..+...+.++.+.|+++++
T Consensus 1 ~~~~~~~~l~~~~----~p~~~g~Gi~~v~~~~~---------------------------~~~~~~~~~~~~~k~~~~~ 49 (355)
T PF00654_consen 1 IGGLLSGLLWKKF----APEAAGSGIPEVKAALR---------------------------GKSGRLPFRTLPVKFVGSI 49 (355)
T ss_dssp -HHHHHHHHHHHC-----GGGSB-SHHHHHHHCT---------------------------TSS---HHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHH----CCccCCCCHHHHHHHHh---------------------------CCCCCCCHHHHHHHHHHHH
Confidence 3678888886543 12234677999886421 1122256678899999999
Q ss_pred HHhhcCCccCCchhHHHHHHHHHHHHhhhhCCCchh-hHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhh
Q 004241 230 ITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRRPRR-KVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSAS 308 (766)
Q Consensus 230 lslgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~~~~-~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~ 308 (766)
+++++|+|+|||||++|+|++++++++|+++.++++ +|.+++||+|||+|++||||++|++|++|++..++ +
T Consensus 50 ~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~-------~ 122 (355)
T PF00654_consen 50 LSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDF-------S 122 (355)
T ss_dssp HHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCC-------S
T ss_pred HHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccc-------c
Confidence 999999999999999999999999999999987777 88899999999999999999999999999976542 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcCCCCccc-cCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004241 309 LAYTTSMVILSAVIASVVSEVGLGSEPAFK-VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGI 387 (766)
Q Consensus 309 ~~~~~~~~~~aa~~a~~v~~~~~g~~~~f~-~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~ 387 (766)
.+.+.+ +++++++|+++++.+.++++.|. +++.+.+++.|+++++++|++||++|.+|++++.++.+++++.. +.+.
T Consensus 123 ~~~~~~-~~~as~~a~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~ 200 (355)
T PF00654_consen 123 VRLLLP-ALVASIVATLVSRLLFGNHPIFGSVPQLFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-RLKI 200 (355)
T ss_dssp TTTHHH-HHHHHHHHHHHHHHHHTSS-SS---TT-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCH
T ss_pred chhhHH-HHHHHHHHHHHHHHHcCcCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc
Confidence 345555 68899999999999999999998 87655557899999999999999999999999999888777664 3334
Q ss_pred chhHHHHHHHHHHHHHHHHhcc--cccCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhH
Q 004241 388 PKAVFPVMGGLAVGLIALMFPE--ILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLF 465 (766)
Q Consensus 388 ~~~~~~~lggllvg~i~~~~P~--~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~ 465 (766)
++++++++++++++++.+++|+ .+|+|++.++.++++++ ..++...++.+++.|+++|++|+++|++||.|+|+++
T Consensus 201 ~~~l~~~i~gl~~g~l~~~~p~~~~~g~G~~~i~~ll~~~~--~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~ 278 (355)
T PF00654_consen 201 PPILRPVIGGLVIGLLAFFFPEGSVLGSGYELIQSLLSGSP--PWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLF 278 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHSSGG-SGSSSSTTHHHHHCTT------S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhhhcccCCcHHHHHHHHcCCc--chhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHH
Confidence 4567999999999999999999 99999999999997642 1246778888999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHH
Q 004241 466 IGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLS 545 (766)
Q Consensus 466 iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va 545 (766)
||+++|+++|.+++..+|+. ...+|..|+++||+|++++++|+|++++++++|+||++++++|+|+++++|
T Consensus 279 iGa~~G~~~~~~~~~~~~~~---------~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a 349 (355)
T PF00654_consen 279 IGAALGRLFGALLGSFFPGI---------SSVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVA 349 (355)
T ss_dssp HHHHHHHHHHHHHHHH-GGG----------T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCc---------CCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999877651 123799999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 004241 546 SWFTS 550 (766)
Q Consensus 546 ~~v~~ 550 (766)
+++++
T Consensus 350 ~~v~~ 354 (355)
T PF00654_consen 350 YLVAR 354 (355)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98875
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=1.1e-53 Score=474.75 Aligned_cols=383 Identities=39% Similarity=0.601 Sum_probs=320.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhhc
Q 004241 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (766)
Q Consensus 99 G~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~~~~~~i~~v 178 (766)
|+++|+.+.+|+.+++++++++|+..+... .....+|+++++.|++|+++++++.++.+ + ..++|++++
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~v~l~~~~~~---~--~~g~G~~~v 69 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGEL------AAGSLSPLYILLVPVIGGLLVGLLVRLLG---P--ARGHGIPEV 69 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccc------ccccccHHHHHHHHHHHHHHHHHHHHHhC---c--ccCCChHHH
Confidence 688999999999999999999988644211 00112345577889999999999875422 1 345678887
Q ss_pred cccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHHHHHHHhhh
Q 004241 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (766)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~ig~~l~~~ 258 (766)
+.... ..++..+.++.+.|++++++++++|+|+|||||++|+|+++|++++++
T Consensus 70 ~~~~~---------------------------~~~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~ 122 (383)
T cd00400 70 IEAIA---------------------------LGGGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRR 122 (383)
T ss_pred HHHHH---------------------------hCCCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 64211 011123456788999999999999999999999999999999999999
Q ss_pred hCCCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 004241 259 FDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFK 338 (766)
Q Consensus 259 ~~~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~g~~~~f~ 338 (766)
++.++.++|.+++||+|||++++||||++|++|++|++..++. .+.+. ++++++++++.+++.+.++.+.|.
T Consensus 123 ~~~~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~-------~~~~~-~~~~~~~~a~~v~~~~~~~~~~~~ 194 (383)
T cd00400 123 LRLSRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYS-------VASLI-PVLLASVAAALVSRLLFGAEPAFG 194 (383)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhcc-------HHHHH-HHHHHHHHHHHHHHHHcCCCCeee
Confidence 9998899999999999999999999999999999999966422 23344 468899999999999889989888
Q ss_pred cCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHH
Q 004241 339 VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENV 418 (766)
Q Consensus 339 ~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i 418 (766)
++..+..+..+++.++++|++||++|.+|++++.++.+++++. +.++++++++++++++++.+++|+..|+|++.+
T Consensus 195 ~~~~~~~~~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~----~~~~~~~~~i~gll~~~~~~~~p~~~g~G~~~~ 270 (383)
T cd00400 195 VPLYDPLSLLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRL----PIPPWLRPALGGLLLGLLGLFLPQVLGSGYGAI 270 (383)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 8764445678899999999999999999999888776654432 346778899999999999999999999999998
Q ss_pred HHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccc
Q 004241 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (766)
Q Consensus 419 ~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (766)
+..++++ .+...+..+++.|+++|++|+++|++||+|+|++++||++|+.+|++++.++|. +..+
T Consensus 271 ~~~~~~~-----~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~----------~~~~ 335 (383)
T cd00400 271 LLALAGE-----LSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPG----------LVAS 335 (383)
T ss_pred HHHHcCC-----hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCc----------ccCC
Confidence 8877654 355566778999999999999999999999999999999999999999987663 3467
Q ss_pred hHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 004241 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSS 546 (766)
Q Consensus 499 p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~ 546 (766)
+..|+++||+|++++++|+|++++++++|+||+++.++|+|+++++|+
T Consensus 336 ~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 336 PGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999998763
No 17
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=4e-51 Score=453.16 Aligned_cols=385 Identities=15% Similarity=0.232 Sum_probs=296.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004241 88 NSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSL 167 (766)
Q Consensus 88 ~~~~~l~~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~ 167 (766)
-..++++++++|+++|+++++|+.+++++++++|+..|.. ..... ..+|+ .+++|++||+++|++.++. ++
T Consensus 9 ~~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~----~~~~~-~~~~~-~~~~~~~gGllvgll~~~~---~~ 79 (414)
T PRK03655 9 MLLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGT----LGIAQ-DSPLW-IIGMLTLTGIAVGLVIRFS---PG 79 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc----ccccc-ccchH-HHHHHHHHHHHHHHHHHHc---CC
Confidence 3567899999999999999999999999999999876521 11111 12343 5578999999999986542 11
Q ss_pred CCCCCcchhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHH
Q 004241 168 DDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (766)
Q Consensus 168 ~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~i 247 (766)
..|+ .|++.... .++. ..+....|++++++++++|+|+|||||++|+
T Consensus 80 --~~G~-~~~~~~~~-----------------------------~~~~-~~~~~~~~~~~~~l~l~~G~S~GrEGP~Vqi 126 (414)
T PRK03655 80 --HAGP-DPATEPLI-----------------------------GAPV-PPSALPGLLLALILGLAGGVSLGPEHPIMTV 126 (414)
T ss_pred --CCCC-hHHHHHHh-----------------------------cCCC-CccHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 1122 23322110 0011 1123457889999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHH
Q 004241 248 GKSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVS 327 (766)
Q Consensus 248 Ga~ig~~l~~~~~~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~ 327 (766)
|++++++++|+++ ++.++|+++.||+|||+||+||||++|++|++|++++++.. .......+. +++++++..++
T Consensus 127 Ga~igs~~~r~~~-~~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~----~~~~~~~~~-v~aa~~a~~v~ 200 (414)
T PRK03655 127 NIALAVAIGARLL-PRVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEV----PLWDRLFAP-LMAAAAGALTT 200 (414)
T ss_pred HHHHHHHHHHHhc-cCCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhH----HHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999984 33566778999999999999999999999999998765321 011122332 45667777777
Q ss_pred HhhcCCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHh
Q 004241 328 EVGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMF 407 (766)
Q Consensus 328 ~~~~g~~~~f~~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~ 407 (766)
+...+....|.+++++..+..+++.++++|++||++|.+|++.....++++++ .+.| ++++.++|+++++++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~----~~~p-~~~~~lgGl~vg~l~l~~ 275 (414)
T PRK03655 201 GLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMHR----LKNP-VLVLGIGGFILGILGVIG 275 (414)
T ss_pred HHhCCCCcceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccc-hHHHHHHHHHHHHHHHHh
Confidence 76655444445555555566788899999999999999999887766554442 2334 456899999999999876
Q ss_pred -cccccCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCC
Q 004241 408 -PEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSN 486 (766)
Q Consensus 408 -P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~ 486 (766)
|+.+|+||+.++.+.++. +.+...++.+.++|+++|++|+++|++||+|+|++++||++|..++++++ .
T Consensus 276 ~~~~~g~Gy~~i~~~~~~~----~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l~p----~-- 345 (414)
T PRK03655 276 GPLTLFKGLDEMQQMAANQ----AFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAHVP----A-- 345 (414)
T ss_pred CCccccCCHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHhcc----C--
Confidence 778999999999887653 24566677788999999999999999999999999999999999988753 1
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhcC----chHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHh
Q 004241 487 PTIHFSILEVASPQAYGLVGMAATLAGVCQ----VPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTS 550 (766)
Q Consensus 487 ~~~~~~~~~~~~p~~~alvGaaa~lag~~~----aPls~~viv~Eltg~~~~llP~mia~~va~~v~~ 550 (766)
.++...+++||+|++++++| +|+|++++++||| ++|+|++++++.|+.-
T Consensus 346 ----------~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~~ 398 (414)
T PRK03655 346 ----------VPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLLL 398 (414)
T ss_pred ----------CChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHHH
Confidence 35678899999999999999 6999999999999 8999999999998753
No 18
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.8e-51 Score=453.16 Aligned_cols=373 Identities=20% Similarity=0.291 Sum_probs=294.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 004241 95 SCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDD 174 (766)
Q Consensus 95 ~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~~~~~~~ 174 (766)
++++|+++|+++.+|+..+++.+++.|+ .+|. .+.+|.. |++++++.+. .++. .+++
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----------------~~~~-~~~~p~~-g~~i~~l~~~---~~~~--~~~g 58 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----------------HPWL-LPFLPLA-GLLIGYLYQK---FGKN--SEKG 58 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhHH-HHHHHHH-HHHHHHHHHH---hCcc--cCCC
Confidence 6899999999999999999999998763 1343 3455655 5555555432 1122 2345
Q ss_pred hhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHHHHHHHHH
Q 004241 175 VQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKG 254 (766)
Q Consensus 175 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~iGa~ig~~ 254 (766)
++++++.... .+...+++..+.|++++.+++++|+|+|||||++|+|+++|++
T Consensus 59 ~~~v~~~~~~---------------------------~~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~ 111 (378)
T cd03682 59 NNLIIEEIHG---------------------------PEEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADA 111 (378)
T ss_pred hHHHHHHHHc---------------------------cCCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHH
Confidence 6666532110 0112223456789999999999999999999999999999999
Q ss_pred HhhhhCCCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHhhcCCC
Q 004241 255 VGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSE 334 (766)
Q Consensus 255 l~~~~~~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~~~~~g~~ 334 (766)
+++++|.+++++|++++||+|||++++||||++|++|++|++..+. ++.+.+.+ +++++++++.+++.+.+.+
T Consensus 112 ~~~~~~~~~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~------~~~~~~~~-~~i~~~~a~~v~~~~~~~~ 184 (378)
T cd03682 112 FGRVFKLPEEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGR------LRYSALIP-CLVAAIVADWVSHALGLEH 184 (378)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhh------hhHHHHHH-HHHHHHHHHHHHHHhCCCC
Confidence 9999999888999999999999999999999999999999985321 22344444 5789999999887654555
Q ss_pred CccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHh--ccccc
Q 004241 335 PAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMF--PEILY 412 (766)
Q Consensus 335 ~~f~~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~--P~~~g 412 (766)
+.|.++..+..++.++++++++|++||++|.+|+++++++++++++. +.+.+++++++|++++++.++. |+..|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~----~~~~~~~~~iggl~~g~~~~~~~~~~~~G 260 (378)
T cd03682 185 THYHIVFIPTLDPLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR----IKNPYLRPFVGGLLIILLVYLLGSRRYLG 260 (378)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 66766543333577889999999999999999999988877665432 2346788999999999988775 45789
Q ss_pred CCHHHHHH-HHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCcccc
Q 004241 413 WGFENVDI-LLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF 491 (766)
Q Consensus 413 ~G~~~i~~-ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~ 491 (766)
.|++.++. +.+++ .+ ...++.|+++|++|+|+|++||.|+|++++||++|+++|++++
T Consensus 261 ~g~~~i~~~~~~~~-----~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~------------ 319 (378)
T cd03682 261 LGTPLIEDSFFGGT-----VY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG------------ 319 (378)
T ss_pred CCHHHHHHHHhcCC-----ch----HHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC------------
Confidence 99999887 44332 12 2346899999999999999999999999999999999999864
Q ss_pred ccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhccCCcch
Q 004241 492 SILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVK 559 (766)
Q Consensus 492 ~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~~~~llP~mia~~va~~v~~~~~~~~~~~ 559 (766)
.++..|+++||+|++++++|+|++++++++|+|| ++.++|+|+++++|+.+++ ++++|
T Consensus 320 -----~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~----~~~iy 377 (378)
T cd03682 320 -----LPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG----HTGIY 377 (378)
T ss_pred -----CCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC----CCCCC
Confidence 2467899999999999999999999999999999 5788999999999998764 45565
No 19
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.80 E-value=8.9e-19 Score=204.81 Aligned_cols=190 Identities=14% Similarity=0.167 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhc-CCch---hHHHHHHHHHHHHHHHHh-cccc-cCCHHHHH
Q 004241 350 LPLYLLLGVLCGLISLTLSRCTTYMLAIVDN----LQKDN-GIPK---AVFPVMGGLAVGLIALMF-PEIL-YWGFENVD 419 (766)
Q Consensus 350 l~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~----~~~~~-~~~~---~~~~~lggllvg~i~~~~-P~~~-g~G~~~i~ 419 (766)
+...+++|+++|+++.+|.++..+..+++.. ..... ..++ .+.|++||++++++.++. +... +.+.+.++
T Consensus 25 ~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~ 104 (574)
T PRK01862 25 LIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYME 104 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHH
Confidence 4567999999999999999998887776432 11111 1122 344677788887765543 3333 44556565
Q ss_pred HHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccch
Q 004241 420 ILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASP 499 (766)
Q Consensus 420 ~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p 499 (766)
...++. ..++ +...+.|++.+.+|+|+|.|.|+++|++.+||++|..+++.++. +..+.
T Consensus 105 ~~~~~~---~~~~----~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~--------------~~~~~ 163 (574)
T PRK01862 105 AVALGD---GVVP----VRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHF--------------DPPRL 163 (574)
T ss_pred HHHcCC---CCCC----hHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCC--------------CHHHH
Confidence 554332 1233 33456799999999999999999999999999999999998763 11345
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHh-CCc--hhHHHHHHHHHHHHHHHhhhccCCcchh
Q 004241 500 QAYGLVGMAATLAGVCQVPLTSVLLLFELT-QDY--RIVLPLLGAVGLSSWFTSGQMRRRDVKE 560 (766)
Q Consensus 500 ~~~alvGaaa~lag~~~aPls~~viv~Elt-g~~--~~llP~mia~~va~~v~~~~~~~~~~~~ 560 (766)
..+..||+||.+++++++|++++++++|.+ +++ +.+.|.++++++++++++.+..+++.|+
T Consensus 164 r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~~g~~~~~~ 227 (574)
T PRK01862 164 RLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREFAGYQPPYE 227 (574)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCceee
Confidence 678899999999999999999999999975 554 5889999999999988877665555553
No 20
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.76 E-value=3.8e-18 Score=172.14 Aligned_cols=132 Identities=19% Similarity=0.251 Sum_probs=114.1
Q ss_pred hccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHH--hhhccccchhHhhh
Q 004241 620 LKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA--QAKTSRSKLLVSEM 697 (766)
Q Consensus 620 ~l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~--~~~~~~~~~~V~dv 697 (766)
....++..|+|+++++++++++++.+|.+.|.+++++.+||+|++.+++|+||.+|+.+..... +........+++++
T Consensus 241 ~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~i 320 (382)
T COG3448 241 RMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGI 320 (382)
T ss_pred HhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCccccc
Confidence 3456789999999999999999999999999999999999999999999999999998732110 01111234679999
Q ss_pred cccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhcc
Q 004241 698 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 762 (766)
Q Consensus 698 m~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~~ 762 (766)
|++ ...++.+|++..+...++.+.+.+++||+|+ +|+++||||++|++.+.-++
T Consensus 321 mt~------~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-----~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 321 MTT------PVVTVRPDTPAVELVPRLADEGLHALPVLDA-----AGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred ccC------cceeecCCCcHHHHHHHhhcCCcceeeEEcC-----CCcEEEEeeHHHHHHHHHHH
Confidence 998 7899999999999999999999999999998 89999999999999876443
No 21
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.72 E-value=5.9e-17 Score=180.46 Aligned_cols=184 Identities=22% Similarity=0.234 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-------hcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCcc
Q 004241 357 GVLCGLISLTLSRCTTYMLAIVDNLQK-------DNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVK 429 (766)
Q Consensus 357 Gv~~Gl~g~~f~~~~~~~~~~~~~~~~-------~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~ 429 (766)
|+++|+++.+|.++..+..+++.+... ..++...+.+.+++++++++....|...|.|.+++.+.++++. .
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~G~~~v~~~~~~~~--~ 78 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPARGHGIPEVIEAIALGG--G 78 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHhCC--C
Confidence 688999999999999888877654321 1111233667888899988887777688899999877776531 1
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHH
Q 004241 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAA 509 (766)
Q Consensus 430 ~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa 509 (766)
. ......+.|++++.+++++|.|+|.++|++.+|+++|..+++.++. +..+...++++||+|
T Consensus 79 ~----~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~--------------~~~~~~~l~~~G~aa 140 (383)
T cd00400 79 R----LPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL--------------SRNDRRILVACGAAA 140 (383)
T ss_pred C----CCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHH
Confidence 1 1244678999999999999999999999999999999999998753 123567899999999
Q ss_pred HHHHhcCchHHHHHHHHHHhCCch---hHHHHHHHHHHHHHHHhhhccCCcchh
Q 004241 510 TLAGVCQVPLTSVLLLFELTQDYR---IVLPLLGAVGLSSWFTSGQMRRRDVKE 560 (766)
Q Consensus 510 ~lag~~~aPls~~viv~Eltg~~~---~llP~mia~~va~~v~~~~~~~~~~~~ 560 (766)
.+++++|+|++++++++|++++.. .+.|.++++.+++.+++.+..+++.|+
T Consensus 141 glaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~~ 194 (383)
T cd00400 141 GIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLFGAEPAFG 194 (383)
T ss_pred HHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCeee
Confidence 999999999999999999987554 789999999999988876655444443
No 22
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.71 E-value=1e-16 Score=179.41 Aligned_cols=185 Identities=24% Similarity=0.275 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCchhH----HHHHHHHHHHHHHH-HhcccccCCHHHHHHHHccCCCc
Q 004241 356 LGVLCGLISLTLSRCTTYMLAIVDNLQKDN--GIPKAV----FPVMGGLAVGLIAL-MFPEILYWGFENVDILLESRPFV 428 (766)
Q Consensus 356 lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~--~~~~~~----~~~lggllvg~i~~-~~P~~~g~G~~~i~~ll~~~~~~ 428 (766)
+|+++|+++.+|.++..++++++....... ..++++ .+.+++++++.+.. +.|+..|+|++++...++++.
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~-- 78 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLL-- 78 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCC--
Confidence 488999999999999999888776544321 111222 22344555655544 479999999999999887751
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHH
Q 004241 429 KGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMA 508 (766)
Q Consensus 429 ~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaa 508 (766)
. .......+.|++.+.+|+++|.|+|+++|++.+|+++|..+++.++. ...+...+..+||+
T Consensus 79 -~---~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~--------------~~~~~~~l~~~g~a 140 (402)
T cd01031 79 -P---PNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT--------------SPEERRQLIAAGAA 140 (402)
T ss_pred -C---cccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHH
Confidence 1 12245678999999999999999999999999999999999998763 12357889999999
Q ss_pred HHHHHhcCchHHHHHHHHH-HhCCch--hHHHHHHHHHHHHHHHhhhccCCcchh
Q 004241 509 ATLAGVCQVPLTSVLLLFE-LTQDYR--IVLPLLGAVGLSSWFTSGQMRRRDVKE 560 (766)
Q Consensus 509 a~lag~~~aPls~~viv~E-ltg~~~--~llP~mia~~va~~v~~~~~~~~~~~~ 560 (766)
|.+++++|+|++++++++| ++++++ .+.|+++++++++++++.+..+++.|+
T Consensus 141 ag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~~~~~~~~~ 195 (402)
T cd01031 141 AGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLFFGLGPVLS 195 (402)
T ss_pred HhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCCceEe
Confidence 9999999999999999999 677654 799999999999988876555554443
No 23
>PRK05277 chloride channel protein; Provisional
Probab=99.69 E-value=6.2e-16 Score=174.91 Aligned_cols=190 Identities=16% Similarity=0.198 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CchhHHHHHHHHHHHHHH-----HHhcccccCCHHHHHHHH
Q 004241 351 PLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNG---IPKAVFPVMGGLAVGLIA-----LMFPEILYWGFENVDILL 422 (766)
Q Consensus 351 ~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~---~~~~~~~~lggllvg~i~-----~~~P~~~g~G~~~i~~ll 422 (766)
.+.+++|+++|+++.+|.++.+++++++........ ++.+..+++.+.+++.+. .+.|+..|+|+++++..+
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~l 81 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGAL 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHH
Confidence 467999999999999999999998887655432211 222333444444433332 245999999999999888
Q ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHH
Q 004241 423 ESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAY 502 (766)
Q Consensus 423 ~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 502 (766)
++.. ... .......|++.+.+++|+|.|+|+++|++++|+++|..+++.++.. +..+...+
T Consensus 82 ~~~~---~~~---~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~-------------~~~~~~~l 142 (438)
T PRK05277 82 EGLR---PVR---WWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLR-------------SDEARHTL 142 (438)
T ss_pred cCCC---ccc---hHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccC-------------CHHHHHHH
Confidence 7641 122 1234678999999999999999999999999999999999987631 11356789
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHH-HhCC--ch--hHHHHHHHHHHHHHHHhhhccCCcch
Q 004241 503 GLVGMAATLAGVCQVPLTSVLLLFE-LTQD--YR--IVLPLLGAVGLSSWFTSGQMRRRDVK 559 (766)
Q Consensus 503 alvGaaa~lag~~~aPls~~viv~E-ltg~--~~--~llP~mia~~va~~v~~~~~~~~~~~ 559 (766)
..+||||.+++++|+|++++++++| ++++ ++ .+.|+++++++++++.+.+..+.+.|
T Consensus 143 i~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~~ 204 (438)
T PRK05277 143 LAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFNGEQAVI 204 (438)
T ss_pred HHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 9999999999999999999999999 5653 33 47999999999988876654444443
No 24
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.67 E-value=2.6e-16 Score=156.64 Aligned_cols=123 Identities=24% Similarity=0.320 Sum_probs=114.1
Q ss_pred hccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcc
Q 004241 620 LKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCS 699 (766)
Q Consensus 620 ~l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~ 699 (766)
...+.+|+++|++++.++.+++|++|+.+.+.++++++.||+|++ +++|++|..|+.+++.+. ..+.+|+|+|.
T Consensus 168 siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g-----~~~~kV~~~M~ 241 (294)
T COG2524 168 SIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANG-----NLDAKVSDYMR 241 (294)
T ss_pred ecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcC-----CccccHHHHhc
Confidence 355678999999999999999999999999999999999999976 999999999999988753 24588999999
Q ss_pred cCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHh
Q 004241 700 ADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 759 (766)
Q Consensus 700 ~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~ 759 (766)
+ +++++++|+.+.||+++|.++++.++.|+|. +|+++|+||++||++.+
T Consensus 242 k------~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-----~gkpvGiITrTDIL~~i 290 (294)
T COG2524 242 K------NVITINEDEDIYDAIRLMNKNNVGRLLVTDS-----NGKPVGIITRTDILTRI 290 (294)
T ss_pred c------CCceEcCchhHHHHHHHHHhcCcceEEEEcc-----CCcEEEEEehHHHHHHh
Confidence 9 8999999999999999999999999999997 89999999999999875
No 25
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.63 E-value=1.2e-14 Score=161.92 Aligned_cols=192 Identities=19% Similarity=0.141 Sum_probs=136.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004241 88 NSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSL 167 (766)
Q Consensus 88 ~~~~~l~~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~ 167 (766)
.+..++..+++|+++|+.+.+|.+.+.+.++.+.... ...+ +.+.++.+.++|++++.+..+.+. .
T Consensus 198 ~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~--------~~~~----~~~~~~~~~~~gl~~~~~~~~~~~--~ 263 (390)
T cd01034 198 LGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWV--------RRFR----RRRPVLFAALCGLALALIGLVSGG--L 263 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccc----chhhHHHHHHHHHHHHHHHHhCCC--c
Confidence 3455788999999999999999999998887654311 0000 111223455677777766443211 2
Q ss_pred CCCCCcchhhccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHH
Q 004241 168 DDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (766)
Q Consensus 168 ~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~i 247 (766)
.. |.|.+++++.. +.+........+.|++++++++++|.+.|+|+|++++
T Consensus 264 ~~--G~G~~~i~~~~----------------------------~~~~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~i 313 (390)
T cd01034 264 TF--GTGYLQARAAL----------------------------EGGGGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAV 313 (390)
T ss_pred cc--cCcHHHHHHHH----------------------------hCCCcccHHHHHHHHHHHHHHHHcCCCcceechHHHH
Confidence 22 33344433210 0000112335679999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHH
Q 004241 248 GKSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVS 327 (766)
Q Consensus 248 Ga~ig~~l~~~~~~~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~v~ 327 (766)
|+++|+.++++++. .+.+.++.+|+||++++++|+|+++++|++|++... . ...++++++++|+.++
T Consensus 314 Ga~~G~~~~~~~~~--~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~----------~-~l~p~lia~~~A~~v~ 380 (390)
T cd01034 314 GAGLGSLLAALLGS--VSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQ----------Q-MLLPLLAAALLASGVS 380 (390)
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCCh----------h-hHHHHHHHHHHHHHHH
Confidence 99999999999864 356789999999999999999999999999998531 2 2344688999999999
Q ss_pred HhhcCCCCcc
Q 004241 328 EVGLGSEPAF 337 (766)
Q Consensus 328 ~~~~g~~~~f 337 (766)
+.+ +.++.|
T Consensus 381 ~~~-~~~~iY 389 (390)
T cd01034 381 RLV-CPEPLY 389 (390)
T ss_pred HHh-CCCCCC
Confidence 875 555655
No 26
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.61 E-value=3.7e-14 Score=157.72 Aligned_cols=182 Identities=17% Similarity=0.160 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004241 89 SGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLD 168 (766)
Q Consensus 89 ~~~~l~~~lvG~l~Gl~a~lf~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~p~~ggl~~g~l~~~~~~~~~~ 168 (766)
+..+.+.+++|+++|+++.+|++.++.+++++... ..+| ..+.++|++++.+..+.+. .
T Consensus 202 ~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~~--------------~~~~----~~~~l~gl~~g~~~~~~p~---~ 260 (388)
T cd01033 202 TPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPKG--------------KRIL----WQMPLAFLVIGLLSIFFPQ---I 260 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------cchH----HHHHHHHHHHHHHHHHHHH---H
Confidence 55577899999999999999999999988764210 0112 2356888888887554332 2
Q ss_pred CCCCcchhh-ccccCCCCCCCcccccccchhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhcCCccCCchhHHHH
Q 004241 169 DDDDDDVQQ-VQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (766)
Q Consensus 169 ~~~~~~i~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~k~~~~~lslgsG~s~G~EGP~v~i 247 (766)
.+.|.+.-+ +... +.....-....+.|++++.+++++|++.|.|+|++.+
T Consensus 261 ~G~G~~~i~~~~~~-----------------------------~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~i 311 (388)
T cd01033 261 LGNGRALAQLAFST-----------------------------TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLAL 311 (388)
T ss_pred hCCcHHHHHHHHcC-----------------------------CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHH
Confidence 333322111 1100 0000111335689999999999999999999999999
Q ss_pred HHHHHHHHhhhhCC--CchhhHHHHhhhhhHHHHHhhcchhHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHH
Q 004241 248 GKSIAKGVGNLFDR--RPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (766)
Q Consensus 248 Ga~ig~~l~~~~~~--~~~~~r~l~~~G~aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~ 325 (766)
|+++|+.+++.++. ++.+...++.+|+||.+++++|||+++++|++|++-.+ +..+.| .++++++|+.
T Consensus 312 Ga~~G~~~g~~~~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~---------~~~l~P-l~ia~~~a~~ 381 (388)
T cd01033 312 GALLGALLGIVWNALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQN---------PLFLIP-LMLAVAGAVA 381 (388)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCC---------HHHHHH-HHHHHHHHHH
Confidence 99999999998652 34556689999999999999999999999999996422 234444 6789999999
Q ss_pred HHHhh
Q 004241 326 VSEVG 330 (766)
Q Consensus 326 v~~~~ 330 (766)
+++.+
T Consensus 382 vs~~~ 386 (388)
T cd01033 382 VSRFI 386 (388)
T ss_pred HHHHh
Confidence 98764
No 27
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.60 E-value=1.9e-14 Score=159.62 Aligned_cols=175 Identities=19% Similarity=0.302 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccccc
Q 004241 353 YLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLT 432 (766)
Q Consensus 353 ~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~ 432 (766)
.+++|+++|+++.+|+++..++.+++.. .++. .....++|++++.+...+|+..+.|.+++.+.++++. ...+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----~~~~-~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~~~~~~~--~~~~ 74 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----HPWL-LPFLPLAGLLIGYLYQKFGKNSEKGNNLIIEEIHGPE--EGIP 74 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHH-HHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHccC--CCCc
Confidence 5789999999999999998887765432 1111 1222345666666667777777788888877777531 1122
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHH
Q 004241 433 ADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLA 512 (766)
Q Consensus 433 ~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa~la 512 (766)
......|++++.+++++|.|+|++.|++.+|+++|..+++.++. +..+...+..+||+|.++
T Consensus 75 ----~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~--------------~~~~~r~l~~~g~aAgla 136 (378)
T cd03682 75 ----LRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL--------------PEEDRRILLIAGIAAGFA 136 (378)
T ss_pred ----hHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHH
Confidence 23456799999999999999999999999999999999997753 122456789999999999
Q ss_pred HhcCchHHHHHHHHHHh--C--CchhHHHHHHHHHHHHHHHhhh
Q 004241 513 GVCQVPLTSVLLLFELT--Q--DYRIVLPLLGAVGLSSWFTSGQ 552 (766)
Q Consensus 513 g~~~aPls~~viv~Elt--g--~~~~llP~mia~~va~~v~~~~ 552 (766)
+++|+|++++++++|++ + +++.++|.++++++++.+++.+
T Consensus 137 a~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~ 180 (378)
T cd03682 137 AVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL 180 (378)
T ss_pred HHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987 3 3567899999999998887544
No 28
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.57 E-value=4.3e-14 Score=158.39 Aligned_cols=183 Identities=16% Similarity=0.161 Sum_probs=139.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----hhhcCCchhHHHHHHHHHHHHHHHHh-c--ccccCCHH
Q 004241 349 ELPLYLLLGVLCGLISLTLSRCTTYMLAIVDN-----L----QKDNGIPKAVFPVMGGLAVGLIALMF-P--EILYWGFE 416 (766)
Q Consensus 349 el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~lggllvg~i~~~~-P--~~~g~G~~ 416 (766)
.+.+.+++|+++|+.+.+|.+.++++++.+-. . ....++..++.|++||++++++.+.+ | +..++|.+
T Consensus 4 ~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~~~~g~~ 83 (418)
T PRK01610 4 RLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQRPHAPT 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccccCCCcH
Confidence 45677999999999999999988776553211 0 11111223345778999998876554 3 35667777
Q ss_pred HHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccc
Q 004241 417 NVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEV 496 (766)
Q Consensus 417 ~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~ 496 (766)
.+.+.++.+ ..++. ...+.|++.+.+++|+|.|.|+++|+..+||++|..+++.++. .
T Consensus 84 ~vi~av~~~---g~~~~----~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~~---------------~ 141 (418)
T PRK01610 84 DYMEALQTD---GQFDY----AASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTP---------------R 141 (418)
T ss_pred HHHHHHHcC---CCCCc----cHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhCC---------------h
Confidence 776666542 12232 3467899999999999999999999999999999999998762 1
Q ss_pred cchHHHHHHHHHHHHHHhcCchHHHHHHHHHHh-CC--chhHHHHHHHHHHHHHHHhhhc
Q 004241 497 ASPQAYGLVGMAATLAGVCQVPLTSVLLLFELT-QD--YRIVLPLLGAVGLSSWFTSGQM 553 (766)
Q Consensus 497 ~~p~~~alvGaaa~lag~~~aPls~~viv~Elt-g~--~~~llP~mia~~va~~v~~~~~ 553 (766)
.+...+..||+||.+++++|+|++++++.+|.. ++ +..+.|++++++++.++++.+.
T Consensus 142 ~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~~ 201 (418)
T PRK01610 142 QEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLLN 201 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 356789999999999999999999999999964 43 4588999999999988876554
No 29
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.54 E-value=5.4e-14 Score=159.74 Aligned_cols=197 Identities=16% Similarity=0.185 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h---hcCC-c----hhHHHHHHHHHHHHHHH-HhcccccCCHHHH
Q 004241 349 ELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQ-K---DNGI-P----KAVFPVMGGLAVGLIAL-MFPEILYWGFENV 418 (766)
Q Consensus 349 el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~-~---~~~~-~----~~~~~~lggllvg~i~~-~~P~~~g~G~~~i 418 (766)
.+...+++|+++|+++.+|.++..++.+++.... + .... . ....+++++++.+++.. +.|+..|+|.+++
T Consensus 32 ~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~v 111 (466)
T cd03685 32 KWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEV 111 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHH
Confidence 3456799999999999999999988877643321 1 1111 1 11345566777776654 4599999999999
Q ss_pred HHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccc
Q 004241 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (766)
Q Consensus 419 ~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (766)
+..+++... +...-+..++.|++.+.+++|+|.|.|+++|++.+||++|..+++.....+......++. ..+..+
T Consensus 112 ~~~l~g~~~----~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~ 186 (466)
T cd03685 112 KGYLNGVKI----PHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRY-FRNDRD 186 (466)
T ss_pred HHHHcCcCc----cccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhh-ccCHHH
Confidence 998876421 111224557899999999999999999999999999999999998431000000000000 001235
Q ss_pred hHHHHHHHHHHHHHHhcCchHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHh
Q 004241 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ---DYRIVLPLLGAVGLSSWFTS 550 (766)
Q Consensus 499 p~~~alvGaaa~lag~~~aPls~~viv~Eltg---~~~~llP~mia~~va~~v~~ 550 (766)
...+..+||||.+++++|+|++++++++|.+. +.+...+.++++++|..+++
T Consensus 187 ~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~ 241 (466)
T cd03685 187 KRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLN 241 (466)
T ss_pred HHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999765 23344555555555544443
No 30
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.54 E-value=4.1e-14 Score=131.16 Aligned_cols=123 Identities=21% Similarity=0.236 Sum_probs=108.9
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccC
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSAD 701 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~ 701 (766)
..++++++|..+++.+++++++.++++.|++++++++||+++ ++++|-||.+++.+...+.. +...+..+.++|..
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~--e~i~~~~vr~vM~e- 138 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM--ESIRSLRVREVMGE- 138 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc--cchhhhhHHHHhcC-
Confidence 668999999999999999999999999999999999999996 89999999999999876532 22345789999998
Q ss_pred CCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhc
Q 004241 702 GETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 761 (766)
Q Consensus 702 ~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~ 761 (766)
..++|++|+++..+.+++..++. +.|++ +|+++||||+.|+++..++
T Consensus 139 -----~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e------~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 139 -----PFPTVSPDESLNVISQLLEEHPA--VLVVE------NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred -----CCCcCCCCCCHHHHHHHHhhCCe--EEEEe------CCceEEEEeHHHHHHHHhc
Confidence 78999999999999999987764 77886 7999999999999998754
No 31
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53 E-value=4.8e-14 Score=153.48 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=112.2
Q ss_pred hhhhcc---ccccccccccc--eeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccc
Q 004241 617 VEELKR---RVFVSEVMRTR--YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSK 691 (766)
Q Consensus 617 ~~~~l~---~~~V~diM~~~--~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~ 691 (766)
+...+. .++|+|+|+++ ++++++++++.++.+.|.+++...+||+|++|+++|+|+.+|+.+.+... ...+
T Consensus 187 ~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~----~~~~ 262 (321)
T PRK11543 187 PAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG----GALT 262 (321)
T ss_pred CCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC----CCcC
Confidence 345577 78999999998 99999999999999999988889999999999999999999998765431 1124
Q ss_pred hhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 692 LLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 692 ~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
.++.++|++ ++.++.+++++.++++.|.+++.+++||||+ +|+++|+||++|++++
T Consensus 263 ~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 263 TPVNEAMTR------GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-----NGKLTGAINLQDFYQA 318 (321)
T ss_pred CcHHHhcCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHhc
Confidence 569999998 7889999999999999999999999999997 7899999999999875
No 32
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.52 E-value=7.3e-14 Score=152.36 Aligned_cols=122 Identities=21% Similarity=0.271 Sum_probs=107.9
Q ss_pred ccccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcc
Q 004241 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCS 699 (766)
Q Consensus 622 ~~~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~ 699 (766)
..++|+|+|++ +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++..... ....+.+++++|+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~---~~~~~~~v~~im~ 276 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG---IDLRQASIADVMT 276 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC---CCcccCCHHHhcC
Confidence 77899999997 899999999999999999988888888889999999999999998755321 0122467999999
Q ss_pred cCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 700 ADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 700 ~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
+ ++.++++++++.++++.|.+++.+++||+| +++++|+||++|++++
T Consensus 277 ~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~------~~~lvGiit~~dil~~ 323 (326)
T PRK10892 277 P------GGIRVRPGILAVDALNLMQSRHITSVLVAD------GDHLLGVLHMHDLLRA 323 (326)
T ss_pred C------CCEEECCCCCHHHHHHHHHHCCCcEEEEee------CCEEEEEEEhHHhHhc
Confidence 8 789999999999999999999999999998 5799999999999874
No 33
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.51 E-value=3.6e-13 Score=151.86 Aligned_cols=145 Identities=29% Similarity=0.381 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHH--HHHHHhcccccCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHH
Q 004241 390 AVFPVMGGLAVG--LIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIG 467 (766)
Q Consensus 390 ~~~~~lggllvg--~i~~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iG 467 (766)
+..+.++|++++ ++..+.|+.-|+|.+++.+.+++.. .........+|++++.+++++|.+.|++.|++++|
T Consensus 67 ~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~a~~~~~------~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqig 140 (443)
T COG0038 67 PLVPALGGLLVGALLVYKFAPEARGSGIPQAIEALHGRK------GRISPRVLPVKLVATLLTIGSGASLGREGPSVQIG 140 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCChhHHHHHHhcCC------CcccHHHHHHHHHHHHHHHhcCcccccccHHHHHH
Confidence 344568888888 3445679999999999999888741 12234456679999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhC----CchhHHHHHHHHH
Q 004241 468 AATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ----DYRIVLPLLGAVG 543 (766)
Q Consensus 468 a~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg----~~~~llP~mia~~ 543 (766)
+++|+.+++.++. +..+.....++|+||.+++++++|++++++++|+-. ++..+.|++++++
T Consensus 141 a~~g~~~~~~l~~--------------~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~ 206 (443)
T COG0038 141 AAIGSLLGRLLKL--------------SREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAV 206 (443)
T ss_pred HHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9999999999974 235678899999999999999999999999999753 3568999999999
Q ss_pred HHHHHHhhhcc
Q 004241 544 LSSWFTSGQMR 554 (766)
Q Consensus 544 va~~v~~~~~~ 554 (766)
++..+...+..
T Consensus 207 va~~v~~~~~~ 217 (443)
T COG0038 207 VALLVAGLFGG 217 (443)
T ss_pred HHHHHHHHcCC
Confidence 99988876643
No 34
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=3.6e-13 Score=123.15 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=97.2
Q ss_pred eeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeCC
Q 004241 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTATP 713 (766)
Q Consensus 634 ~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~ 713 (766)
+.++++++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+...... ....+.+++++|.+ ++.++++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~--~~~~~~~v~~~~~~------~~~~v~~ 74 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCG--GPGCTAPVENVMTR------AVVSCRP 74 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcC--CCcccCCHHHHhcC------CCeeECC
Confidence 567899999999999999999999999999999999999999987653211 12234678999988 7889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 714 NMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 714 d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++++.++++.|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 75 ~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 75 GDLLHDVWQVMKQRGLKNIPVVDE-----NARPLGVLNARDALK 113 (114)
T ss_pred CCCHHHHHHHHHHcCCCeEEEECC-----CCcEEEEEEhHhhcc
Confidence 999999999999999999999997 789999999999975
No 35
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.49 E-value=2.1e-13 Score=153.51 Aligned_cols=189 Identities=19% Similarity=0.152 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------chhHHHHHHHHHHHHHHH-HhcccccCCHHHHHHHH
Q 004241 351 PLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGI-------PKAVFPVMGGLAVGLIAL-MFPEILYWGFENVDILL 422 (766)
Q Consensus 351 ~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lggllvg~i~~-~~P~~~g~G~~~i~~ll 422 (766)
...+++|++.|+++.+|..+.+++.+++..+.+.... .+...|++++++.+.+.. +.|+..|+|-++++..+
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l 82 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKTIL 82 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHH
Confidence 4678999999999999999998888776655432111 123445666777776664 68999999999998888
Q ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHH
Q 004241 423 ESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAY 502 (766)
Q Consensus 423 ~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 502 (766)
++... +...-+...+.|++.+.+++++|.|.|+++|++.+||++|..+++..+..... ..+..+...+
T Consensus 83 ~g~~~----~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~--------~~~~~~rr~L 150 (426)
T cd03683 83 RGVVL----PEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGI--------YENESRRMEM 150 (426)
T ss_pred cCCCc----cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhccccccc--------ccCHHHHHHH
Confidence 76421 12223456789999999999999999999999999999999999987531000 0012334568
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHh-CC--chhHHHHHHHHHHHHHHHhh
Q 004241 503 GLVGMAATLAGVCQVPLTSVLLLFELT-QD--YRIVLPLLGAVGLSSWFTSG 551 (766)
Q Consensus 503 alvGaaa~lag~~~aPls~~viv~Elt-g~--~~~llP~mia~~va~~v~~~ 551 (766)
..||+||.+++++|+|++++++.+|.. .+ .+.+.|.+++++++..+++.
T Consensus 151 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~ 202 (426)
T cd03683 151 LAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRL 202 (426)
T ss_pred HHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999965 33 34778999998888876543
No 36
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=3.1e-13 Score=123.06 Aligned_cols=109 Identities=22% Similarity=0.263 Sum_probs=95.0
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+++.+.++|+|++++++|+++..|+.+.... ...+.++.++|.. ++.++.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-----~~~~~~v~~~~~~------~~~~v~ 70 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN-----DYETLKVCEVYIV------PVPIVY 70 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc-----cccccChhheeec------CCcEEC
Confidence 46788999999999999998889999999999999999999999864211 1123568899987 678999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.+++++|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 71 ~~~~l~~al~~m~~~~~~~lpVvd~-----~~~~~Giit~~di~~ 110 (111)
T cd04603 71 CDSKVTDLLRIFRETEPPVVAVVDK-----EGKLVGTIYERELLR 110 (111)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEEcC-----CCeEEEEEEhHHhhc
Confidence 9999999999999999999999996 789999999999975
No 37
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.48 E-value=2.5e-13 Score=152.56 Aligned_cols=191 Identities=18% Similarity=0.168 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------chhHHHHHHHHHHHHHH-HHhcccccCCHHHHHHHHccCCCc
Q 004241 357 GVLCGLISLTLSRCTTYMLAIVDNLQKDNGI-------PKAVFPVMGGLAVGLIA-LMFPEILYWGFENVDILLESRPFV 428 (766)
Q Consensus 357 Gv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lggllvg~i~-~~~P~~~g~G~~~i~~ll~~~~~~ 428 (766)
|++.|+++.+|..+.++..++++.+.....- .+...+++++++.+.+. ++.|+..|+|.++++..+++...
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~- 79 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHL- 79 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCcc-
Confidence 5677888888888888887776655432111 12234556565655554 47899999999999988876321
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHH
Q 004241 429 KGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMA 508 (766)
Q Consensus 429 ~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaa 508 (766)
+........+.|++.+.+++|+|.|.|+++|++.+||++|..+++..+............ ..+..+...+..+|+|
T Consensus 80 ---~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~ll~aGaa 155 (416)
T cd01036 80 ---PMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQL-FRNPRDRRDFLVAGAA 155 (416)
T ss_pred ---cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhh-ccCHHHHHHHHHHHhh
Confidence 122234557899999999999999999999999999999999999765321000000000 0012456789999999
Q ss_pred HHHHHhcCchHHHHHHHHHHhC-C--chhHHHHHHHHHHHHHHHhhh
Q 004241 509 ATLAGVCQVPLTSVLLLFELTQ-D--YRIVLPLLGAVGLSSWFTSGQ 552 (766)
Q Consensus 509 a~lag~~~aPls~~viv~Eltg-~--~~~llP~mia~~va~~v~~~~ 552 (766)
|.+++++++|++++++.+|.+. + .+.+.|.+++++++..+++..
T Consensus 156 AGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 156 AGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred cchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999774 2 347799999998888777554
No 38
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.47 E-value=2.8e-13 Score=153.08 Aligned_cols=126 Identities=23% Similarity=0.265 Sum_probs=113.4
Q ss_pred hhhhhccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHh
Q 004241 616 EVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVS 695 (766)
Q Consensus 616 ~~~~~l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~ 695 (766)
+..+.++.+++.++|.+++.++++++++.|+++.|.+++.+.+||+|++++++|+||.+|+... ....+++
T Consensus 81 ~q~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---------~~~~~V~ 151 (479)
T PRK07807 81 VVAEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---------DRFTQVR 151 (479)
T ss_pred HHHHHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---------ccCCCHH
Confidence 4556788899999999999999999999999999999999999999999999999999998532 1125699
Q ss_pred hhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhc
Q 004241 696 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 761 (766)
Q Consensus 696 dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~ 761 (766)
++|++ ++.++++++++.+|+++|.+++.+++||||+ +|+++|+||++||++....
T Consensus 152 diMt~------~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-----~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 152 DVMST------DLVTLPAGTDPREAFDLLEAARVKLAPVVDA-----DGRLVGVLTRTGALRATIY 206 (479)
T ss_pred HhccC------CceEECCCCcHHHHHHHHHhcCCCEEEEEcC-----CCeEEEEEEHHHHHHHhhC
Confidence 99998 8899999999999999999999999999997 7899999999999987654
No 39
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.1e-12 Score=121.09 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=92.7
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+....+... .....+.+.|...+.+..++.+++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYN--NLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccc--cccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999999999999999999999999999999999999999765331110 111223332211111112578999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd~-----~~~~~Givt~~di~~ 119 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVDE-----NKRVEGIISLSDILQ 119 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEECC-----CCCEEEEEEHHHhhc
Confidence 9999999999999999999999996 689999999999975
No 40
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.44 E-value=1.3e-12 Score=119.38 Aligned_cols=112 Identities=32% Similarity=0.421 Sum_probs=97.0
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+...+.. ...+.++.++|.+ ++.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---~~~~~~~~~~~~~------~~~~v~ 72 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---AGEPSAVDEVATP------PLLTVH 72 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---ccccccHHHhccC------CceEEC
Confidence 5678899999999999999999999999999999999999999987664311 1123458888887 789999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCC--CcEEEEEeHHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQR--GQLVGLLDRESIILA 758 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~--g~lvGIVt~~DIl~~ 758 (766)
+++++.++++.|.+++.+.+||+|+ + |+++|+||++|++++
T Consensus 73 ~~~~l~~~l~~~~~~~~~~~~Vvd~-----~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 73 PDEPLAHALDRMASRGLRQLPVVDR-----GNPGQVLGLLTRENVLLA 115 (115)
T ss_pred CCCCHHHHHHHHHHcCCceeeEEeC-----CCCCeEEEEEEhHHhhcC
Confidence 9999999999999999999999996 4 799999999999864
No 41
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.8e-12 Score=118.36 Aligned_cols=112 Identities=24% Similarity=0.326 Sum_probs=96.8
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCC-CcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+++.+.... ....+.++.++|.+ ++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~--~~~~~~~v~~~~~~------~~~~v 73 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEG--RDPDRVNVYEIMTK------PLISV 73 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCC--CCCCccCHHHHhcC------CCeeE
Confidence 56789999999999999998899999999987 99999999999988654311 11233678999987 78899
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 712 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 712 ~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
++++++.++++.|.+++.+.+||+| +|+++|+||++|++++
T Consensus 74 ~~~~~l~~~~~~~~~~~~~~~~Vvd------~~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 74 SPDMDIKYCARLMERTNIRRAPVVE------NNELIGIISLTDIFLA 114 (114)
T ss_pred CCCCCHHHHHHHHHHcCCCEeeEee------CCEEEEEEEHHHhhcC
Confidence 9999999999999999999999998 5889999999999763
No 42
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.43 E-value=1.4e-12 Score=147.44 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH-HHhcccccCCHHHHHHHHccCCCcccccHHH
Q 004241 357 GVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIA-LMFPEILYWGFENVDILLESRPFVKGLTADM 435 (766)
Q Consensus 357 Gv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~lggllvg~i~-~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~ 435 (766)
|++.|+++..+..+..++..++....+ .....+.+++++++++.+. .+.|+..|+|.++++..+++... +...
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~----~~~~ 74 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYCN--YIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFII----RGFL 74 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccc----cccc
Confidence 678899999998887777655443221 0112233445666666664 56899999999999888876421 1122
Q ss_pred HHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhc
Q 004241 436 LLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVC 515 (766)
Q Consensus 436 l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa~lag~~ 515 (766)
-....+.|++.+.+++++|.|.|+++|+..+||++|..++++++..-. +..+...+..||+||.+++++
T Consensus 75 ~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~-----------~~~~~r~li~~GaaAGlaAaF 143 (445)
T cd03684 75 GKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRR-----------NEAKRREILSAAAAAGVAVAF 143 (445)
T ss_pred cHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHHHHhhhhHHhc
Confidence 245678999999999999999999999999999999999998764211 234567889999999999999
Q ss_pred CchHHHHHHHHHHh-C--CchhHHHHHHHHHHHHHHHhh
Q 004241 516 QVPLTSVLLLFELT-Q--DYRIVLPLLGAVGLSSWFTSG 551 (766)
Q Consensus 516 ~aPls~~viv~Elt-g--~~~~llP~mia~~va~~v~~~ 551 (766)
++|++++++++|.. . +.+.+.|.++++++|.++++.
T Consensus 144 ~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~ 182 (445)
T cd03684 144 GAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKS 182 (445)
T ss_pred CCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999964 3 345789999999999887754
No 43
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=1.6e-12 Score=119.55 Aligned_cols=113 Identities=22% Similarity=0.247 Sum_probs=95.3
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+...... ...+.+++++|.+. +++.+++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~---~~~~~~~~~~~~~~----~~~~~v~ 74 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA---DLQKVPVGVIMTRM----PNITTTT 74 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC---CccCCCHHHHhCCC----CCcEEEC
Confidence 4678999999999999999899999999999899999999999988654211 11245688888730 1467999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCC---CcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQR---GQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~---g~lvGIVt~~DIl~ 757 (766)
+++++.+++++|.+++.+.+||||+ + ++++|+||++|+++
T Consensus 75 ~~~~l~~~~~~~~~~~~~~lpVvd~-----~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 75 PEESVLEAAKKLIEHQVDSLPVVEK-----VDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCcHHHHHHHHHHcCCCEeeEEeC-----CCccceEEEEEEhhheec
Confidence 9999999999999999999999996 4 69999999999875
No 44
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.4e-12 Score=120.66 Aligned_cols=116 Identities=27% Similarity=0.350 Sum_probs=98.5
Q ss_pred cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhc-------cccchhHhhhcccCCCC
Q 004241 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-------SRSKLLVSEMCSADGET 704 (766)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~-------~~~~~~V~dvm~~~~~~ 704 (766)
+++.++++++++.++.+.|.+.+++.+||+|++|+++|+|+.+|+.+......... ...+.++.++|.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---- 77 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP---- 77 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC----
Confidence 46788999999999999999999999999998899999999999987654311100 0123568899987
Q ss_pred ccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 705 CCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 705 ~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||++|++++
T Consensus 78 --~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvit~~di~~~ 124 (124)
T cd04600 78 --PVVTVRPDTPIAELVPLLADGGHHHVPVVDE-----DRRLVGIVTQTDLIAA 124 (124)
T ss_pred --CCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-----CCCEEEEEEhHHhhcC
Confidence 7899999999999999999999999999997 7899999999999864
No 45
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=1.4e-12 Score=116.36 Aligned_cols=94 Identities=18% Similarity=0.278 Sum_probs=84.6
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCC-CcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|++|.+|+.+.. .+.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~--------------------------~~~~v 55 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL--------------------------RLVSI 55 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe--------------------------eeEEe
Confidence 46789999999999999999999999999975 8999999999987532 14689
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCC-CcEEEEEeHHHHHH
Q 004241 712 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQR-GQLVGLLDRESIIL 757 (766)
Q Consensus 712 ~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~-g~lvGIVt~~DIl~ 757 (766)
++++++.+++++|.+++.+++||+|+ + |+++|+||.+|++.
T Consensus 56 ~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~~giit~~d~~~ 97 (98)
T cd04618 56 HPERSLFDAALLLLKNKIHRLPVIDP-----STGTGLYILTSRRILK 97 (98)
T ss_pred CCCCcHHHHHHHHHHCCCCEeeEEEC-----CCCCceEEeehhhhhc
Confidence 99999999999999999999999996 5 89999999999975
No 46
>PRK03655 putative ion channel protein; Provisional
Probab=99.42 E-value=7.4e-12 Score=139.81 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=126.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHH
Q 004241 349 ELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQK-------DNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDIL 421 (766)
Q Consensus 349 el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~-------~~~~~~~~~~~lggllvg~i~~~~P~~~g~G~~~i~~l 421 (766)
-+...+++|+++|+.+.+|.+++.+.++++-.... ..++.....+.++|++++++..+.|..-|. ...++..
T Consensus 12 l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~~~~G~-~~~~~~~ 90 (414)
T PRK03655 12 LSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSPGHAGP-DPATEPL 90 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcCCCCCC-hHHHHHH
Confidence 34678999999999999999999888776543211 001111234678899999988777755444 2333333
Q ss_pred HccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHH
Q 004241 422 LESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQA 501 (766)
Q Consensus 422 l~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 501 (766)
.+.+ .. ......|++++.+++++|.|.|+++|++++||++|..+++.+.. ..+...
T Consensus 91 -~~~~----~~----~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~~---------------~~~~~~ 146 (414)
T PRK03655 91 -IGAP----VP----PSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLP---------------RVNRMD 146 (414)
T ss_pred -hcCC----CC----ccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc---------------CCChhH
Confidence 3221 12 13456799999999999999999999999999999999987731 123445
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHH-hCCch------hHHHHHHHHHHHHHHHhhh
Q 004241 502 YGLVGMAATLAGVCQVPLTSVLLLFEL-TQDYR------IVLPLLGAVGLSSWFTSGQ 552 (766)
Q Consensus 502 ~alvGaaa~lag~~~aPls~~viv~El-tg~~~------~llP~mia~~va~~v~~~~ 552 (766)
..++|+||.+++++|+|++++++.+|. .++++ .+.|+ ++++++..+++.+
T Consensus 147 l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v-~aa~~a~~v~~~~ 203 (414)
T PRK03655 147 WTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPL-MAAAAGALTTGLF 203 (414)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 778999999999999999999999995 56544 34454 4555566665543
No 47
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=3.1e-12 Score=116.47 Aligned_cols=110 Identities=24% Similarity=0.311 Sum_probs=95.7
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
+..++++++++.++++.|.+.+.+.++|+|++++++|+++.+|+.+.+.... ..+.++.++|.+ .+.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~----~~~~~v~~~~~~------~~~~v~ 72 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGL----SLDDPVSEVMNR------NPITAK 72 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCC----CcCCCHHHhhcC------CCEEEc
Confidence 3567899999999999999888899999999999999999999987654311 123568999987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+|+ +|+++|+||++|++.
T Consensus 73 ~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~di~~ 112 (113)
T cd04607 73 VGSSREEILALMRERSIRHLPILDE-----EGRVVGLATLDDLLS 112 (113)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEEhHHhcc
Confidence 9999999999999999999999997 789999999999874
No 48
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.41 E-value=1.8e-12 Score=138.34 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=108.2
Q ss_pred cccccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEecCC-CcEEEEEehhhHHHHHHHHhhhccccchhHhhh
Q 004241 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEM 697 (766)
Q Consensus 621 l~~~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dv 697 (766)
+...+|+++|++ ++.++++++++.++++.+.+++++.+||++++ ++++|+|+.+|++...... .....+.++
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~-----~~~~~l~~l 138 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD-----AEAFSMDKV 138 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhcc-----CCcCCHHHH
Confidence 555699999998 69999999999999999999999999999876 7899999999998654321 012447888
Q ss_pred cccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhcc
Q 004241 698 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 762 (766)
Q Consensus 698 m~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~~ 762 (766)
|.+ +.++++++++.++++.|++++.+.+||+|+ .|.++|+||++|+++.+-.+
T Consensus 139 ~r~-------~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-----~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 139 LRQ-------AVVVPESKRVDRMLKEFRSQRYHMAIVIDE-----FGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred cCC-------CcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEeEHHHHHHHHhCC
Confidence 876 568999999999999999999999999997 78999999999999987543
No 49
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=4.5e-12 Score=114.63 Aligned_cols=108 Identities=28% Similarity=0.347 Sum_probs=95.6
Q ss_pred cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
+++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+..... ..++.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~-------~~~~~~~~~~------~~~~v 68 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD-------KKSVEDIMTR------NVITA 68 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC-------ccCHHHhcCC------CCeEE
Confidence 4677899999999999999999999999999999999999999998765431 1348888877 78899
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 712 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 712 ~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++++++.++++.|.+++.+.+||+++ +|+++|+||++|+.+
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~v~~~di~~ 109 (110)
T cd04605 69 TPDEPIDVAARKMERHNISALPVVDA-----ENRVIGIITSEDISK 109 (110)
T ss_pred CCCCcHHHHHHHHHHhCCCEEeEECC-----CCcEEEEEEHHHhhh
Confidence 99999999999999999999999997 789999999999964
No 50
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=2.5e-12 Score=116.13 Aligned_cols=105 Identities=20% Similarity=0.300 Sum_probs=94.6
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.... .+.+++++|.. ++.+++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~---------~~~~v~~~~~~------~~~~v~ 67 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD---------PDTTIEKVMTK------NPITVN 67 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc---------ccccHHHHhcC------CCeEEC
Confidence 577899999999999999998889999999999999999999997421 23578999987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+|+ +|+++|++|++|+++
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~di~~ 107 (108)
T cd04596 68 PKTSVASVAHMMIWEGIEMLPVVDD-----NKKLLGIISRQDVLK 107 (108)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcC-----CCCEEEEEEHHHhhc
Confidence 9999999999999999999999997 789999999999975
No 51
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.39 E-value=2.1e-12 Score=120.28 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=96.2
Q ss_pred cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
+++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+...... ...+.+++++|++ ++.++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~---~~~~~~v~~im~~------~~~~v 72 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK---VQPSDPVSKALYK------QFKRV 72 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc---cCCCCcHHHHhhc------cceec
Confidence 46788999999999999999999999999999999999999999987654321 1235789999998 78999
Q ss_pred CCCCCHHHHHHHHHH---------cCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 712 TPNMNLLSALILMDR---------YGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 712 ~~d~sL~eal~~m~~---------~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
++++++.++.+++.. .+..++||+|+ +|+++|+||+.|++++
T Consensus 73 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 73 NKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-----QEKPIGIVTKIDLLSY 123 (124)
T ss_pred CCCCCHHHHHhhcccCCceEEEecccccccccccc-----ccceEEEEehhHhhhh
Confidence 999999999996533 35677888886 7999999999999875
No 52
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.39 E-value=9.5e-13 Score=136.54 Aligned_cols=117 Identities=18% Similarity=0.299 Sum_probs=108.8
Q ss_pred ccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccC
Q 004241 624 VFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSAD 701 (766)
Q Consensus 624 ~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~ 701 (766)
++|+|+|+| +..++.+++++++-.++..+++++++||+|+..+++|+||.+|+... .++.+++.+|++
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~---------~~~t~ieKVMtk- 257 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK---------KPSTTIEKVMTK- 257 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC---------CCCccHHHHhcc-
Confidence 589999995 88999999999999999999999999999999999999999998743 245889999999
Q ss_pred CCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 702 GETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 702 ~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
+|.++.+.+++..+.++|.-.+++.+||+|+ +++++|+|||+|++++.+
T Consensus 258 -----np~tv~~~tsVAsvaq~MiwE~iem~PVv~~-----n~~llGiitR~dvlk~lq 306 (432)
T COG4109 258 -----NPITVRAKTSVASVAQMMIWEGIEMLPVVDS-----NNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred -----CCeeecccchHHHHHHHHHhccceeeeEEcC-----CceEEEEEEHHHHHHHHH
Confidence 8999999999999999999999999999998 899999999999999875
No 53
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=3.8e-12 Score=115.27 Aligned_cols=109 Identities=30% Similarity=0.310 Sum_probs=96.0
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++..|+.+.+.... .+.++.++|.. ++.+++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~-----~~~~v~~~~~~------~~~~i~ 70 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG-----PDAPVRGVMRR------DFPTVS 70 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC-----CCCcHHHHhcC------CCcEEC
Confidence 4677899999999999998888899999998899999999999987664311 23578899987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+|+ +|+++|++|++|+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~dl~~ 110 (111)
T cd04639 71 PSATLDAVLRLMQQGGAPAVPVVDG-----SGRLVGLVTLENVGE 110 (111)
T ss_pred CCCcHHHHHHHHHhcCCceeeEEcC-----CCCEEEEEEHHHhhc
Confidence 9999999999999999999999996 689999999999975
No 54
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.39 E-value=4.5e-12 Score=113.79 Aligned_cols=104 Identities=24% Similarity=0.217 Sum_probs=92.6
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+... .++.++|.+ .+.++.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~----------~~~~~~~~~------~~~~~~ 65 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG----------GCCGDHAEP------FKVTVS 65 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc----------cchhhhccc------CCEEEC
Confidence 5678899999999999999888899999998999999999999986421 247788887 678899
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+|+ +++++|+||++|+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 66 VDDDLRIVLSRMFAHDMSWLPCVDE-----DGRYVGEVTQRSIAD 105 (106)
T ss_pred CCCCHHHHHHHHHHCCCCeeeEECC-----CCcEEEEEEHHHhhc
Confidence 9999999999999999999999997 789999999999975
No 55
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=3e-12 Score=116.77 Aligned_cols=111 Identities=21% Similarity=0.353 Sum_probs=93.5
Q ss_pred ceeEEeCCccHHHHHHHHHHcC-CcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~-~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
++.++++++++.++.+.|.+++ .+.+||+|++++++|+++.+|+.+..... ..+.++.++|.+. ..+.++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~-----~~~~~v~~~~~~~----~~~~~v 72 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ-----WAQTTVIQVMTPA----AKLVTV 72 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh-----ccccchhhhhccc----ccceEE
Confidence 5678899999999999987665 78999999999999999999998765421 1235688888751 035689
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 712 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 712 ~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
.+++++.++++.|.+++.+++||+|+ +++++|++|.+|+++
T Consensus 73 ~~~~~l~~a~~~~~~~~~~~l~Vv~~-----~~~~~Gvl~~~di~~ 113 (114)
T cd04801 73 LSEESLAEVLKLLEEQGLDELAVVED-----SGQVIGLITEADLLR 113 (114)
T ss_pred CCCCcHHHHHHHHHHCCCCeeEEEcC-----CCcEEEEEeccceec
Confidence 99999999999999999999999996 689999999999875
No 56
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=6.5e-12 Score=113.93 Aligned_cols=110 Identities=28% Similarity=0.298 Sum_probs=96.5
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+.+.... ..+.++.++|.+ ++.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~----~~~~~v~~~~~~------~~~~v~ 71 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI----DLDTPVSEIMTR------DLVTVD 71 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC----CCccCHHHhccC------CCEEEC
Confidence 4678899999999999999888999999999999999999999987664321 223578899987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++...+||+|+ +|+++|++|++|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gilt~~dl~~ 111 (112)
T cd04624 72 PDEPVAEAAKLMRKNNIRHHLVVDK-----GGELVGVISIRDLVR 111 (112)
T ss_pred CCCcHHHHHHHHHHcCccEEEEEcC-----CCcEEEEEEHHHhcc
Confidence 9999999999999999999999996 789999999999975
No 57
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=7.5e-12 Score=113.37 Aligned_cols=111 Identities=27% Similarity=0.347 Sum_probs=96.0
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+.+++.+||+|++++++|+++.+|+.+.+..... .....++.++|.+ ++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~--~~~~~~~~~~~~~------~~~~v~ 73 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA--SALDTPVSEIMTR------NVITVT 73 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC--CccccCHHHhcCC------CcEEEC
Confidence 46778999999999999999999999999988999999999999887653211 1123578999987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+.+.+++||+| +|+++|+||.+|+++
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~Vv~------~~~~~Gvit~~di~~ 112 (113)
T cd04623 74 PDDTVDEAMALMTERRFRHLPVVD------GGKLVGIVSIGDVVK 112 (113)
T ss_pred CCCcHHHHHHHHHHcCCCEeEEEe------CCEEEEEEEHHHhhc
Confidence 999999999999999999999998 579999999999975
No 58
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.38 E-value=3.7e-12 Score=142.44 Aligned_cols=122 Identities=18% Similarity=0.134 Sum_probs=107.8
Q ss_pred hcccccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEecCC-CcEEEEEehhhHHHHHHHHhhhccccchhHhh
Q 004241 620 LKRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKLLVSE 696 (766)
Q Consensus 620 ~l~~~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~d 696 (766)
.+++++|+|+|++ ++.+++.+++++|+++.+.+++++++||++++ ++++|+|+.+|+...... .+.++++
T Consensus 187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------~~~~l~~ 259 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------KNFDWQS 259 (408)
T ss_pred ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------CCCCHHH
Confidence 4667899999998 78999999999999999999999999999864 789999999999865421 1245778
Q ss_pred hcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 697 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 697 vm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
+|++ +.+|++++++.++++.|++++.+..+|+|| .|..+|+||.+||++.+-
T Consensus 260 ~~~~-------~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-----~G~~~GiVT~eDileeiv 311 (408)
T TIGR03520 260 LLRE-------PYFVPENKKLDDLLRDFQEKKNHLAIVVDE-----YGGTSGLVTLEDIIEEIV 311 (408)
T ss_pred HcCC-------CeEeCCCCcHHHHHHHHHhcCceEEEEEcC-----CCCEEEEEEHHHHHHHHh
Confidence 8865 789999999999999999999999999997 899999999999999874
No 59
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=4.5e-12 Score=115.66 Aligned_cols=113 Identities=21% Similarity=0.211 Sum_probs=94.2
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhcc--ccchhHhhhcccCCCCccCCeE
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTS--RSKLLVSEMCSADGETCCVPCT 710 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~--~~~~~V~dvm~~~~~~~~~~~~ 710 (766)
+++++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+.......... ..+.++.++|.+ ++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~ 75 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT------DVPV 75 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC------CCce
Confidence 46789999999999999999999999999999999999999999876643111100 013578899988 7889
Q ss_pred eCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 711 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 711 V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
+.+++++.++++.|.+.+ .+||+|+ +|+++|++|++|++++
T Consensus 76 v~~~~~l~~a~~~~~~~~--~~~Vv~~-----~~~~~Gvit~~dil~~ 116 (116)
T cd04643 76 IIDDADIEEILHLLIDQP--FLPVVDD-----DGIFIGIITRREILKA 116 (116)
T ss_pred ecCCCCHHHHHHHHhcCC--ceeEEeC-----CCeEEEEEEHHHhhcC
Confidence 999999999999998865 5999997 7899999999999863
No 60
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=6.4e-12 Score=116.40 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=91.8
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCC-CcEEEEEehhhHHHHHHHHhhhccc------cchhHhhhcccCCCCc
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSR------SKLLVSEMCSADGETC 705 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~------~~~~V~dvm~~~~~~~ 705 (766)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.+.+......... ....+.++|.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS----- 76 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC-----
Confidence 46778999999999999998889999999987 9999999999998865432111000 00122345665
Q ss_pred cCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHH
Q 004241 706 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESII 756 (766)
Q Consensus 706 ~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl 756 (766)
++.++++++++.+|++.|.+++.+++||+|+ +|+++|+||++|+-
T Consensus 77 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~vGiit~~di~ 121 (123)
T cd04627 77 -DVISINGDQPLIDALHLMHNEGISSVAVVDN-----QGNLIGNISVTDVR 121 (123)
T ss_pred -CceEeCCCCCHHHHHHHHHHcCCceEEEECC-----CCcEEEEEeHHHhh
Confidence 7889999999999999999999999999997 78999999999984
No 61
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.37 E-value=7.4e-12 Score=112.76 Aligned_cols=107 Identities=33% Similarity=0.441 Sum_probs=94.9
Q ss_pred cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
+++.++++++++.++.+.|.+.+...+||+|++++++|+++.+|+.+.... ..++.++|.+ .+.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~--------~~~v~~~~~~------~~~~v 67 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE--------AKSLEDIMLE------DVFTV 67 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc--------CCcHhHhhcC------CceEE
Confidence 356788999999999999998889999999998999999999999865421 2468888887 78899
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 712 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 712 ~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++++++.++++.|.+++.+++||+|+ +|+++|++|++|+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~vv~~-----~g~~~Gvit~~~l~~ 108 (109)
T cd04583 68 QPDASLRDVLGLVLKRGPKYVPVVDE-----DGKLVGLITRSSLVD 108 (109)
T ss_pred CCCCcHHHHHHHHHHcCCceeeEECC-----CCeEEEEEehHHhhc
Confidence 99999999999999999999999997 789999999999975
No 62
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=5.2e-12 Score=114.84 Aligned_cols=112 Identities=23% Similarity=0.278 Sum_probs=96.3
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+.+...... ...+.++.++|.+ ++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~~~v~~~~~~------~~~~v~ 74 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYH-CDGVATVRDIMTT------EVLTVS 74 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhc-cCCCccHHHHhcc------CceEEC
Confidence 467889999999999999888888999999999999999999998766432211 1234678999987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Gvit~~di~~ 113 (114)
T cd04629 75 PDDSIVDLAQLMLKAKPKRYPVVD------DGKLVGQISRRDVLR 113 (114)
T ss_pred CCCcHHHHHHHHHHhCCCccCEEE------CCEEEEEEEHHHHhc
Confidence 999999999999999999999999 579999999999976
No 63
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=5.4e-12 Score=116.87 Aligned_cols=115 Identities=27% Similarity=0.319 Sum_probs=97.2
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCC-CcEEEEEehhhHHHHHHHHhhhc--------cccchhHhhhcccCCC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKT--------SRSKLLVSEMCSADGE 703 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~-g~lvGiVt~~dL~~~l~~~~~~~--------~~~~~~V~dvm~~~~~ 703 (766)
++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+.+|+.+.+....... ...+.++.++|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR--- 78 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcC---
Confidence 56788999999999999999998999999987 99999999999987664321100 0123568888887
Q ss_pred CccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 704 TCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 704 ~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|++++
T Consensus 79 ---~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~~Gvit~~di~~~ 125 (125)
T cd04631 79 ---NVITITPDDSIKDAAELMLEKRVGGLPVVDD-----DGKLVGIVTERDLLKA 125 (125)
T ss_pred ---CceEeCCCCcHHHHHHHHHHcCCceEEEEcC-----CCcEEEEEEHHHhhcC
Confidence 7899999999999999999999999999996 6899999999999863
No 64
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1e-11 Score=112.89 Aligned_cols=110 Identities=20% Similarity=0.321 Sum_probs=95.6
Q ss_pred eeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeCC
Q 004241 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTATP 713 (766)
Q Consensus 634 ~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~ 713 (766)
+.++.+++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+...... ...+.++.++|.+ ++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~---~~~~~~i~~~~~~------~~~~v~~ 73 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESE---ELKDAKVREVMNS------PVITIDA 73 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhh---hhcCCcHHHhccC------CceEECC
Confidence 567899999999999999999999999999999999999999987543311 1123578899987 7889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 714 NMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 714 d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++++.++++.|.+++.+.+||+|+ +|+++|++|++|+++
T Consensus 74 ~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 74 NDSIAKARWLMSNNNISRLPVLDD-----KGKVGGIVTEDDILR 112 (113)
T ss_pred CCcHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEEHHHhhc
Confidence 999999999999999999999997 789999999999975
No 65
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=6.2e-12 Score=115.92 Aligned_cols=114 Identities=26% Similarity=0.339 Sum_probs=97.2
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhc------cccchhHhhhcccCCCCcc
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT------SRSKLLVSEMCSADGETCC 706 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~------~~~~~~V~dvm~~~~~~~~ 706 (766)
++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+......... ...+.++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 75 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT------ 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC------
Confidence 4678899999999999999999999999998899999999999987654311110 0124678899987
Q ss_pred CCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 707 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 707 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++.++++++++.++++.|.+.+.+.+||+|+ +|+++|++|+.|+++
T Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~dl~~ 121 (122)
T cd04803 76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDD-----KGTLVGIITRSDFLR 121 (122)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-----CCCEEEEEEHHHhhc
Confidence 7889999999999999999999999999996 689999999999975
No 66
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1e-11 Score=112.58 Aligned_cols=109 Identities=22% Similarity=0.279 Sum_probs=94.8
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+...... ..+.++.++|.+ ++.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~----~~~~~v~~~~~~------~~~~v~ 71 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFES----FLEKKVFNIVSQ------DVFYVN 71 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcc----cccCcHHHHhcC------CcEEEc
Confidence 5678899999999999999999999999999999999999999987543211 123568899987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+| +|+++|+||+.|+++
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~~di~~ 110 (111)
T cd04626 72 EEDTIDEALDIMREKQIGRLPVVD------DNKLIGVVRTKDILD 110 (111)
T ss_pred CCCcHHHHHHHHHHcCCCeeeEeE------CCEEEEEEEhHHhcc
Confidence 999999999999999999999998 478999999999875
No 67
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=6.3e-12 Score=111.55 Aligned_cols=95 Identities=25% Similarity=0.314 Sum_probs=85.6
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
+++++.+++++.++++.|.+++.+.+||+|++++++|+++.+|+.+.. .+.+++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~--------------------------~~~~v~ 55 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS--------------------------EVVTAT 55 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------CcEEec
Confidence 577899999999999999989999999999999999999999987421 246899
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
+++++.++++.|.+++.+++||+|+ +|+++|+||++|++++
T Consensus 56 ~~~~l~~a~~~m~~~~~~~lpVv~~-----~~~~~Giit~~di~~~ 96 (96)
T cd04614 56 KRTTVSECAQKMKRNRIEQIPIING-----NDKLIGLLRDHDLLKP 96 (96)
T ss_pred CCCCHHHHHHHHHHhCCCeeeEECC-----CCcEEEEEEHHHhhcC
Confidence 9999999999999999999999996 6899999999999863
No 68
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=6e-12 Score=117.18 Aligned_cols=114 Identities=22% Similarity=0.225 Sum_probs=92.0
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccc----------hhHhhhcccCC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSK----------LLVSEMCSADG 702 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~----------~~V~dvm~~~~ 702 (766)
++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+++............. ....+.|..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR-- 79 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC--
Confidence 56789999999999999999999999999999999999999999876532111100000 011234444
Q ss_pred CCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 703 ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 703 ~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++.++++++++.++++.|.+++.+++||+|+ +++++|+||++|+++
T Consensus 80 ----~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-----~~~~~Giit~~dil~ 125 (126)
T cd04642 80 ----PLITCTPSSTLKEVITKLVANKVHRVWVVDE-----EGKPIGVITLTDIIS 125 (126)
T ss_pred ----CCeEECCCCcHHHHHHHHHHhCCcEEEEECC-----CCCEEEEEEHHHHhc
Confidence 6789999999999999999999999999996 789999999999975
No 69
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=6.2e-12 Score=115.92 Aligned_cols=115 Identities=26% Similarity=0.349 Sum_probs=96.2
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHh--hhc----cccchhHhhhcccCCCCcc
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ--AKT----SRSKLLVSEMCSADGETCC 706 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~--~~~----~~~~~~V~dvm~~~~~~~~ 706 (766)
++.++++++++.++.+.|.+++++.+||+|++++++|+++.+|+.+...... ... .....++.++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST------ 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC------
Confidence 5678899999999999999888999999999999999999999986421100 000 0123568889887
Q ss_pred CCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 707 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 707 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
++..+++++++.++++.|.+++.+.+||+|+ +|+++|++|++|++++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNE-----KDQLVGIVDRHDVLKA 122 (122)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCcEEEEEEhHHhhcC
Confidence 7889999999999999999999999999997 7899999999999863
No 70
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.35 E-value=1.1e-11 Score=112.13 Aligned_cols=108 Identities=22% Similarity=0.215 Sum_probs=93.1
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCC-CcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+...... ...++.++|. ++.++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~-----~~~~~~~~~~-------~~~~v 69 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE-----EDLDLRDLLR-------PPLFV 69 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC-----CcCCHHHHhc-------CCeec
Confidence 57789999999999999998888999999988 99999999999988764311 1145667664 46789
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 712 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 712 ~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
.+++++.++++.|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 70 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~di~~ 110 (111)
T cd04590 70 PESTPLDDLLEEMRKERSHMAIVVDE-----YGGTAGLVTLEDILE 110 (111)
T ss_pred CCCCcHHHHHHHHHhcCCcEEEEEEC-----CCCEEEEeEHHHhhc
Confidence 99999999999999999999999997 789999999999975
No 71
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.35 E-value=3.6e-12 Score=144.53 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=107.2
Q ss_pred ccccccccccccceeEEeCCccHHHHHHHHHH-----cCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHh
Q 004241 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLA-----EKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVS 695 (766)
Q Consensus 621 l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~-----~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~ 695 (766)
....+++++|++++.++++++|+.++++.+++ ++...++|+|++++++|+|+.+|+... .++.+++
T Consensus 128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a---------~~~~~v~ 198 (449)
T TIGR00400 128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA---------KPEEILS 198 (449)
T ss_pred CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC---------CCCCcHH
Confidence 34568999999999999999999999999975 345678999999999999999998642 1235799
Q ss_pred hhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhcc
Q 004241 696 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 762 (766)
Q Consensus 696 dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~~ 762 (766)
++|++ ++.++++++++.++++.|.+++...+||||+ +|+++|+||.+|+++.+.++
T Consensus 199 ~im~~------~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-----~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 199 SIMRS------SVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-----EGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred HHhCC------CCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-----CCeEEEEEEHHHHHHHHHhh
Confidence 99998 7889999999999999999999999999997 89999999999999988654
No 72
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.4e-11 Score=114.96 Aligned_cols=116 Identities=24% Similarity=0.265 Sum_probs=95.5
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhh----------hccccchhHhhhcccCC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA----------KTSRSKLLVSEMCSADG 702 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~----------~~~~~~~~V~dvm~~~~ 702 (766)
++.++++++++.++++.|.+.+.+.+||+|++++++|++|.+|+.+.+..... .....+.++.++|.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS-- 79 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC--
Confidence 46678999999999999999999999999999999999999999876532110 001123568899987
Q ss_pred CCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 703 ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 703 ~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++.++++++++.++++.|.+++...+||++++ ++++++|+||++|+++
T Consensus 80 ----~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~---~~~~~~Gvit~~di~~ 127 (128)
T cd04632 80 ----PVITASPNDSVRDAVDRMLENDDSSVVVVTPD---DDTKVVGILTKKDVLR 127 (128)
T ss_pred ----CCceECCCCcHHHHHHHHHhCCCCeEeEeccC---CCCcEEEEEEhHhhhc
Confidence 78899999999999999999999999998521 1589999999999975
No 73
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=1.1e-11 Score=117.29 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=96.0
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhc--------------------cccch
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT--------------------SRSKL 692 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~--------------------~~~~~ 692 (766)
++.++++++++.++++.|.+.+.+.+||+|++++++|+++..|+.+......... ...+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 4678899999999999999999999999999999999999999987664211100 00135
Q ss_pred hHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 693 LVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 693 ~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++|.+ ++..+.+++++.++++.|.+++.+++||+| +|+++|+||++|+++
T Consensus 82 ~v~~~~~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~------~~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAEDIMTE------EIITVSPNDDVVDAAKLMLEANISGLPVVD------NDNIVGVITKTDICR 134 (135)
T ss_pred cHHHhcCC------CCeEECCCCCHHHHHHHHHHcCCCEEEEEe------CCEEEEEEEHHHHhh
Confidence 78999987 778999999999999999999999999998 579999999999976
No 74
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.34 E-value=1e-11 Score=112.77 Aligned_cols=111 Identities=27% Similarity=0.339 Sum_probs=96.4
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
+++++++++++.++.+.+.+.+.+.+||+|++++++|+++.+++.+.+..... ....++.++|.+ ++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~---~~~~~v~~~~~~------~~~~v~ 73 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD---ILTLPVADVMTR------NPKTID 73 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc---cccCCHHHhhcc------CCeEEC
Confidence 45678999999999999988888899999999999999999999987653211 122469999988 678999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+|+ +++++|+||..||++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~iG~it~~di~~ 113 (114)
T cd04604 74 PDALAAEALELMEENKITALPVVDD-----NGRPVGVLHIHDLLR 113 (114)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEEEHHHhhc
Confidence 9999999999999999999999997 789999999999975
No 75
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.34 E-value=1.3e-11 Score=112.05 Aligned_cols=112 Identities=27% Similarity=0.394 Sum_probs=96.2
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+...+.. .....++.++|.+ ++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---~~~~~~v~~~~~~------~~~~v~ 72 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS---LYDLVVASDIMTK------PPVVVY 72 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc---ccccEEHHHhccC------CCcEEc
Confidence 5678999999999999999989999999999899999999999987654311 1112678999988 789999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+.+.+.+||+|++ +++++|++|.+|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~Vv~~~----~~~~~Gvvt~~di~~ 113 (114)
T cd04613 73 PEDSLEDALKKFEDSDYEQLPVVDDD----PGKLLGILSRSDLLS 113 (114)
T ss_pred CCCCHHHHHHHHhhCCccEeeEEeCC----CCEEEEEEEhHHhhc
Confidence 99999999999999999999999831 378999999999975
No 76
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=9.8e-12 Score=115.81 Aligned_cols=114 Identities=23% Similarity=0.264 Sum_probs=91.2
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHH--Hhhh-ccccchhHhhhcccCCCCccCCe
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY--AQAK-TSRSKLLVSEMCSADGETCCVPC 709 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~--~~~~-~~~~~~~V~dvm~~~~~~~~~~~ 709 (766)
++.++.+++++.++++.|.+++.+.+||+|++++++|+++.+|+.+.... .... ....+.+++++|++ ++.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~ 75 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP------KED 75 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc------hhh
Confidence 46788999999999999998888999999988999999999999862210 0000 11234668999986 333
Q ss_pred E--e----CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCC-CcEEEEEeHHHHHH
Q 004241 710 T--A----TPNMNLLSALILMDRYGVNQVPVVMEHIPGQR-GQLVGLLDRESIIL 757 (766)
Q Consensus 710 ~--V----~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~-g~lvGIVt~~DIl~ 757 (766)
. + .+++++.++++.|.+++.+++||+|+ + |+++|+||++|+++
T Consensus 76 ~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-----~~~~~~G~it~~di~~ 125 (126)
T cd04640 76 LKALDLEELENASVGDVVETLKASGRQHALVVDR-----EHHQIRGIISTSDIAR 125 (126)
T ss_pred hccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-----CCCEEEEEEeHHHHhh
Confidence 2 2 36899999999999999999999996 5 79999999999975
No 77
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.9e-11 Score=110.57 Aligned_cols=108 Identities=24% Similarity=0.332 Sum_probs=95.0
Q ss_pred cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++..|+.+..... ..+.++.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~-----~~~~~~~~~~~~------~~~~v 69 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG-----LGHAPVKDYMST------DVVTV 69 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc-----cccCcHHHHhcC------CCEEE
Confidence 46778899999999999999888899999998 9999999999998765321 134678999988 78899
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 712 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 712 ~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++++++.+++++|.+++.+.+||+| +|+++|+||++|+++
T Consensus 70 ~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~~Gvvt~~di~~ 109 (110)
T cd04595 70 PPDTPLSEVQELMVEHDIGRVPVVE------DGRLVGIVTRTDLLR 109 (110)
T ss_pred CCCCcHHHHHHHHHHcCCCeeEEEe------CCEEEEEEEhHHhhc
Confidence 9999999999999999999999998 579999999999975
No 78
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.33 E-value=1.9e-11 Score=110.51 Aligned_cols=108 Identities=25% Similarity=0.318 Sum_probs=94.7
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+...... ...++.++|.. ++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~-----~~~~v~~~~~~------~~~~v~ 69 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGL-----ELAKVKDVMTK------DVITID 69 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccc-----cccCHHHHhcC------CceEEC
Confidence 5678899999999999999989999999998 99999999999987654311 12568888887 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~~dl~~ 109 (110)
T cd04588 70 EDEQLYDAIRLMNKHNVGRLIVTDD-----EGRPVGIITRTDILR 109 (110)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEEhHHhhc
Confidence 9999999999999999999999996 689999999999975
No 79
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.33 E-value=5e-12 Score=139.06 Aligned_cols=128 Identities=23% Similarity=0.211 Sum_probs=115.4
Q ss_pred hccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcc
Q 004241 620 LKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCS 699 (766)
Q Consensus 620 ~l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~ 699 (766)
.+-..++.++|+.+++++++++++.+|.+.|.+++.+.+.++|++++..||||++|+....... +...+.+|+++|+
T Consensus 145 e~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~---g~~~~~~V~evmT 221 (610)
T COG2905 145 EFILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIAD---GRSKTQKVSEVMT 221 (610)
T ss_pred hHHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhc---CCCcccchhhhhc
Confidence 3444689999999999999999999999999999999999999999999999999999876542 2234588999999
Q ss_pred cCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhcc
Q 004241 700 ADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 762 (766)
Q Consensus 700 ~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~~ 762 (766)
. ++.+|+.++.+.||+-+|.+++++++||++ +|+++|+||.+||++.++..
T Consensus 222 ~------p~~svd~~~~~feAml~m~r~~I~hl~V~e------~gq~~Gilt~~dIl~l~s~~ 272 (610)
T COG2905 222 S------PVISVDRGDFLFEAMLMMLRNRIKHLPVTE------DGQPLGILTLTDILRLFSQN 272 (610)
T ss_pred c------CceeecCcchHHHHHHHHHHhCCceeeeec------CCeeeEEeeHHHHHHhhCCC
Confidence 9 899999999999999999999999999999 79999999999999988754
No 80
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=9.6e-12 Score=117.26 Aligned_cols=115 Identities=29% Similarity=0.381 Sum_probs=96.4
Q ss_pred cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhh------------h-------ccccch
Q 004241 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA------------K-------TSRSKL 692 (766)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~------------~-------~~~~~~ 692 (766)
+++.++++++++.++++.|.+++++.+||+|++++++|+++.+|+.+....... . ......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 467889999999999999999999999999999999999999999865432100 0 001235
Q ss_pred hHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 693 LVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 693 ~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||++|++++
T Consensus 82 ~v~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd------~g~~~Gvit~~di~~~ 135 (135)
T cd04586 82 KVADVMTR------PVVTVGEDTPLAEVAELMEEHRIKRVPVVR------GGRLVGIVSRADLLRA 135 (135)
T ss_pred CHHHHhCC------CceEeCCCCcHHHHHHHHHHcCCCccCEec------CCEEEEEEEhHhhhcC
Confidence 68899987 789999999999999999999999999998 5899999999999763
No 81
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.33 E-value=1.5e-11 Score=111.60 Aligned_cols=111 Identities=33% Similarity=0.417 Sum_probs=94.4
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+...... . .....++.++|.+ ++.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~-~-~~~~~~v~~i~~~------~~~~v~ 72 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQG-L-DPESTLVERVMTP------NPVCAT 72 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcC-C-CcCcCCHHHhcCC------CCeEEc
Confidence 5678899999999999998888889999997 99999999999975443211 1 1112578999987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+++||+|+ +++++|+||.+|++.
T Consensus 73 ~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 73 SDTPVLEALHLMVQGKFRHLPVVDK-----SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCCHHHHHHHHHHcCCCcccEECC-----CCCEEEEEEHHHhcc
Confidence 9999999999999999999999996 689999999999975
No 82
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.33 E-value=7.4e-12 Score=141.40 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=109.3
Q ss_pred hhhccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhh
Q 004241 618 EELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEM 697 (766)
Q Consensus 618 ~~~l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dv 697 (766)
.+.++.+++.++|.++++++.+++++.++++.|.+++.+.+||+|+ ++++|+||.+|+... ....+++++
T Consensus 82 ae~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~---------~~~~~V~dI 151 (475)
T TIGR01303 82 KQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV---------DRFTQVRDI 151 (475)
T ss_pred HHHHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC---------CCCCCHHHH
Confidence 4557788999999999999999999999999999999988998884 799999999998532 123579999
Q ss_pred cccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhcc
Q 004241 698 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 762 (766)
Q Consensus 698 m~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~~ 762 (766)
|++ ++.++++++++.+++++|.+++.+++||||+ +|+++|+||++||++.....
T Consensus 152 Mt~------~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-----~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 152 MST------DLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-----DGTLAGILTRTGALRATIYT 205 (475)
T ss_pred ccC------CceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHhCC
Confidence 998 7899999999999999999999999999997 78999999999999876543
No 83
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.32 E-value=2.1e-11 Score=110.21 Aligned_cols=109 Identities=27% Similarity=0.334 Sum_probs=95.3
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+....... .+.++.++|.+ ++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~----~~~~v~~~~~~------~~~~~~ 70 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD----LQTPVGEVMSS------PLLTVP 70 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC----CCcCHHHhcCC------CceEEC
Confidence 4678899999999999999988899999987 899999999999876643111 34678999987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+.+.+.+||+|+ +|+++|+|+++|+++
T Consensus 71 ~~~~l~~~l~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~~di~~ 110 (111)
T cd04611 71 ADTSLYDARQLMREHGIRHLVVVDD-----DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEECC-----CCcEEEEEEhHHhhc
Confidence 9999999999999999999999996 789999999999975
No 84
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=1.7e-11 Score=111.88 Aligned_cols=110 Identities=28% Similarity=0.458 Sum_probs=91.4
Q ss_pred ceeEEeCCccHHHHHHHHHHcC-CcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~-~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
++.++++++++.++++.|.+++ ...++|+| +++++|+++.+|+.+...... ...+.++.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~---~~~~~~i~~~~~~------~~~~v 71 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK---DLSDLPIGEVMTQ------PVVTL 71 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC---CccccCHHHhcCC------CcEEE
Confidence 4567899999999999998877 66677777 589999999999987654211 1123578899987 67888
Q ss_pred CCC--CCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 712 TPN--MNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 712 ~~d--~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++ +++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 72 ~~~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Gvit~~dl~~ 114 (115)
T cd04620 72 QESEIQDIFTALSLFRQHQIRHLPVLDD-----QGQLIGLVTAESIRQ 114 (115)
T ss_pred ecccccCHHHHHHHHHHhCCceEEEEcC-----CCCEEEEEEhHHhhc
Confidence 887 78999999999999999999997 789999999999986
No 85
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.31 E-value=9e-12 Score=132.09 Aligned_cols=114 Identities=26% Similarity=0.329 Sum_probs=101.5
Q ss_pred ccccccccccc-eeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccC
Q 004241 623 RVFVSEVMRTR-YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSAD 701 (766)
Q Consensus 623 ~~~V~diM~~~-~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~ 701 (766)
.++|+|+|.++ +.++++++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+.... ....+.+++++|.+
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~----~~~~~~~v~~im~~- 228 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG----GGSLKSEVRDFMTL- 228 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc----CCcccCcHHHhCCC-
Confidence 47899999998 9999999999999999998889999999999999999999999876432 11234679999988
Q ss_pred CCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEe
Q 004241 702 GETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLD 751 (766)
Q Consensus 702 ~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt 751 (766)
++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+|+
T Consensus 229 -----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~g~l~GvI~ 268 (268)
T TIGR00393 229 -----GPKTFKLDALLLEALEFLERRKITSLVVVDD-----HNKVLGVLH 268 (268)
T ss_pred -----CCeEECCCCcHHHHHHHHHHcCCcEEEEECC-----CCeEEEEEC
Confidence 7889999999999999999999999999997 789999985
No 86
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3e-11 Score=109.55 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=92.1
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+++...++|.| +++++|+++.+|+.+...... ....+.+++++|++ ++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~--~~~~~~~v~~~~~~------~~~~v~ 72 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHG--AGVLDTTVRAIMNP------EPIVAS 72 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcC--CchhcCCHHHHhCC------CCeEEC
Confidence 467889999999999999887777777665 599999999999987664310 11123579999987 678999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.+++++|.+++.+.+||+| +|+++|+||++|+++
T Consensus 73 ~~~~l~~a~~~m~~~~~~~l~Vv~------~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 73 PDDSIDEVRRLMVERHLRYLPVLD------GGTLLGVISFHDVAK 111 (112)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEE------CCEEEEEEEHHHhhc
Confidence 999999999999999999999998 589999999999976
No 87
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.31 E-value=3.2e-11 Score=109.23 Aligned_cols=109 Identities=24% Similarity=0.305 Sum_probs=94.1
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
+++++++++++.++++.|.+.+.+.++|+|+ ++++|+++.+|+.+..... ....+.++.++|.+ ++..++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~---~~~~~~~i~~~~~~------~~~~v~ 71 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLD---GLPSSTPVGEIATF------PLITVD 71 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcC---CCCCCCCHHHHhCC------CcEEEC
Confidence 4677899999999999999888889999998 8999999999998765321 11234678899987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+| +++++|+||++|+++
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~~dl~~ 110 (111)
T cd04589 72 PDDFLFNALLLMTRHRIHRVVVRE------GGEVVGVLEQTDLLS 110 (111)
T ss_pred CCCcHHHHHHHHHHhCccEEEEee------CCEEEEEEEhHHhhc
Confidence 999999999999999999999998 579999999999975
No 88
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.31 E-value=1.4e-11 Score=135.77 Aligned_cols=147 Identities=28% Similarity=0.367 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHh-cccccCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHH
Q 004241 395 MGGLAVGLIALMF-PEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMA 473 (766)
Q Consensus 395 lggllvg~i~~~~-P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~ 473 (766)
+++++++++...+ |+..|+|-+++.+.+++.. ...-....+.|++.+.+|+++|.|.|+++|+..+|+++|..
T Consensus 1 ~~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~------~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~ 74 (355)
T PF00654_consen 1 IGGLLSGLLWKKFAPEAAGSGIPEVKAALRGKS------GRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSW 74 (355)
T ss_dssp -HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS---------HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHCCccCCCCHHHHHHHHhCCC------CCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHH
Confidence 4678888887776 9999999999998887752 22445668899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHh
Q 004241 474 YGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ---DYRIVLPLLGAVGLSSWFTS 550 (766)
Q Consensus 474 ~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg---~~~~llP~mia~~va~~v~~ 550 (766)
+++.++.. .......+..+|++|.+++++++|++++++++|... ++..+.|.++++++++.+.+
T Consensus 75 ~~~~~~~~-------------~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~ 141 (355)
T PF00654_consen 75 LGRRFRLS-------------RNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSR 141 (355)
T ss_dssp HHHHTT---------------CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHhhccc-------------chHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHH
Confidence 99987631 112145699999999999999999999999999753 56799999999999999888
Q ss_pred hhccCCcchh
Q 004241 551 GQMRRRDVKE 560 (766)
Q Consensus 551 ~~~~~~~~~~ 560 (766)
.+..+++.|+
T Consensus 142 ~~~~~~~~f~ 151 (355)
T PF00654_consen 142 LLFGNHPIFG 151 (355)
T ss_dssp HHHTSS-SS-
T ss_pred HHcCcCcccc
Confidence 7766666654
No 89
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.31 E-value=7.7e-12 Score=142.18 Aligned_cols=120 Identities=18% Similarity=0.117 Sum_probs=102.5
Q ss_pred cccccccc---cceeEEeCCccHHHHHHHHHHcCCcEEEEecC---CCcEEEEEehhhHHHHHHHHhhhccccchhHhhh
Q 004241 624 VFVSEVMR---TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEM 697 (766)
Q Consensus 624 ~~V~diM~---~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dv 697 (766)
.+|+++|. .+.+++++++|+.|+++.|.+++++.+||+|+ +++++|+||.+|++... ...+.+++++
T Consensus 94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-------~~~~~~V~dI 166 (502)
T PRK07107 94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-------MSLDTKVKDF 166 (502)
T ss_pred HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-------cCCCCCHHHH
Confidence 35777775 35679999999999999999999999999997 68999999999996421 1234779999
Q ss_pred cccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHh
Q 004241 698 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 759 (766)
Q Consensus 698 m~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~ 759 (766)
|++. +++.++++++++.+|+++|.+++.+.+||||+ +++++|+||++|+++..
T Consensus 167 Mt~~----~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-----~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 167 MTPF----EKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-----NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred hCCC----CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEhHHHHhcc
Confidence 9851 15678999999999999999999999999997 78999999999999864
No 90
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.31 E-value=2.3e-11 Score=111.71 Aligned_cols=113 Identities=29% Similarity=0.384 Sum_probs=95.4
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhcc-------ccchhHhhhcccCCCCc
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTS-------RSKLLVSEMCSADGETC 705 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~-------~~~~~V~dvm~~~~~~~ 705 (766)
++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+.......... ..+.++.++|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR----- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC-----
Confidence 4678899999999999999998999999997 999999999999876543111000 113568888887
Q ss_pred cCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 706 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 706 ~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvvt~~di~~ 121 (122)
T cd04585 76 -DPITVSPDASVEEAAELMLERKISGLPVVDD-----QGRLVGIITESDLFR 121 (122)
T ss_pred -CCeEeCCCCcHHHHHHHHHHcCCCceeEECC-----CCcEEEEEEHHHhhh
Confidence 7889999999999999999999999999996 689999999999986
No 91
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.31 E-value=3.5e-11 Score=108.91 Aligned_cols=109 Identities=30% Similarity=0.427 Sum_probs=94.2
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+.+... ....+.++.++|.. ++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~---~~~~~~~i~~~~~~------~~~~v~ 71 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAE---GLDPDTPVSEVMTA------PPITIP 71 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhcc---CCCccCCHHHHhCC------CCeEEC
Confidence 5678899999999999998888899999997 9999999999998754321 11123578899987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+++||+| +|+++|++|++|+++
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Giit~~di~~ 110 (111)
T cd04800 72 PDATVFEALLLMLERGIHHLPVVD------DGRLVGVISATDLLR 110 (111)
T ss_pred CCCcHHHHHHHHHHcCCCeeeEeE------CCEEEEEEEHHHhhc
Confidence 999999999999999999999998 579999999999975
No 92
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=3.1e-11 Score=109.57 Aligned_cols=111 Identities=24% Similarity=0.262 Sum_probs=93.5
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+....... .......++.++|.+ ++.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~--~~~~~~~~~~~~~~~------~~~~v~ 72 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAE--GRDPDTTTVGDVMTR------GVVTVT 72 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhc--cCCcccCCHHHhccC------CccEEC
Confidence 5678999999999999999999999999997 9999999999987322211 111112348999987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+.+.+.+||+|+ +|+++|++|++|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~~di~~ 112 (113)
T cd04622 73 EDDDVDEAARLMREHQVRRLPVVDD-----DGRLVGIVSLGDLAR 112 (113)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEECC-----CCcEEEEEEHHHhhc
Confidence 9999999999999999999999996 689999999999975
No 93
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.30 E-value=2.7e-11 Score=109.45 Aligned_cols=109 Identities=31% Similarity=0.511 Sum_probs=94.4
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+...... ....++.++|.+ ++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~----~~~~~~~~~~~~------~~~~v~ 70 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGR----EATVLVGDVMTR------DPVTAS 70 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCc----ccccCHHHhccC------CCeEEC
Confidence 5678899999999999999888899999998 99999999999987553211 111367888887 789999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+++||+|+ +|+++|+||..|+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~~di~~ 110 (111)
T cd04612 71 PDETLRDALKRMAERDIGRLPVVDD-----SGRLVGIVSRSDLLR 110 (111)
T ss_pred CCCCHHHHHHHHHhCCCCeeeEEcC-----CCCEEEEEEHHHhhh
Confidence 9999999999999999999999996 689999999999975
No 94
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.30 E-value=2.2e-11 Score=111.20 Aligned_cols=106 Identities=18% Similarity=0.253 Sum_probs=91.1
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecC---CCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCe
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPC 709 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~ 709 (766)
++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+++.+|+..... .+.+++++|.+ .+.
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~--------~~~~v~~~~~~------~~~ 68 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD--------SETPLSEVMTP------REV 68 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc--------cCCCHHHhcCC------Cce
Confidence 5678889999999999998888889999997 799999999999864311 12458899987 566
Q ss_pred EeCC--CCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 710 TATP--NMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 710 ~V~~--d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
.+.. ++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 69 ~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-----~~~~~Gvit~~di~~ 113 (114)
T cd04602 69 LVVAPTGITLEEANEILRESKKGKLPIVND-----DGELVALVTRSDLKK 113 (114)
T ss_pred EEECCCCCCHHHHHHHHHhcCCCceeEECC-----CCeEEEEEEHHHhhc
Confidence 7755 999999999999999999999997 789999999999975
No 95
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.30 E-value=1.9e-11 Score=139.62 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=106.8
Q ss_pred hhhccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhh
Q 004241 618 EELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEM 697 (766)
Q Consensus 618 ~~~l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dv 697 (766)
...++.++++++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+||.+|+.+.+.... ...+.++.++
T Consensus 329 ~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~---~~~~~~v~~i 405 (454)
T TIGR01137 329 FDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK---ANPDDAVSKV 405 (454)
T ss_pred HHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC---CCcCCCHHHh
Confidence 4558889999999999999999999999999999989999999999999999999999988664311 1123579999
Q ss_pred cccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHh
Q 004241 698 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 759 (766)
Q Consensus 698 m~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~ 759 (766)
|.+ ++.++++++++.+++++|.+++ .+||++ +|+++|+||++|+++++
T Consensus 406 m~~------~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-----~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 406 MSK------KFIQIGEGEKLSDLSKFLEKNS---SAIVTE-----EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred cCC------CCeEECCcCcHHHHHHHHHHCC---eeEEEE-----CCEEEEEEEHHHHHHhh
Confidence 987 7889999999999999998864 355665 68999999999999874
No 96
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=4.6e-11 Score=110.22 Aligned_cols=113 Identities=23% Similarity=0.300 Sum_probs=95.4
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhh------c-cccchhHhhhcccCCCCc
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK------T-SRSKLLVSEMCSADGETC 705 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~------~-~~~~~~V~dvm~~~~~~~ 705 (766)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+...... + .....++.++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR----- 75 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC-----
Confidence 5678899999999999999999999999997 8999999999998765421100 0 0113468888887
Q ss_pred cCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 706 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 706 ~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++..+.+++++.++++.|.+++...+||+|+ +++++|++|++|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvit~~dll~ 121 (122)
T cd04637 76 -DPITVSPDTPVDEASKLLLENSISCLPVVDE-----NGQLIGIITWKDLLK 121 (122)
T ss_pred -CCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-----CCCEEEEEEHHHhhh
Confidence 7899999999999999999999999999996 789999999999986
No 97
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.30 E-value=1.7e-11 Score=138.76 Aligned_cols=122 Identities=25% Similarity=0.320 Sum_probs=108.1
Q ss_pred hccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCC---CcEEEEEehhhHHHHHHHHhhhccccchhHhh
Q 004241 620 LKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEEFSKYAQAKTSRSKLLVSE 696 (766)
Q Consensus 620 ~l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~---g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~d 696 (766)
..+-.+.++.|.+++.++++++++.|+++.|.+++++.+||+|++ ++++|+||.+|+.... ..+.++++
T Consensus 76 V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~--------~~~~~V~d 147 (450)
T TIGR01302 76 VKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK--------DKGKPVSE 147 (450)
T ss_pred HhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh--------cCCCCHHH
Confidence 334457889999999999999999999999999999999999987 7999999999997431 12467999
Q ss_pred hcc-cCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 697 MCS-ADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 697 vm~-~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
+|+ + ++.++++++++.++++.|.+++.+.+||||+ +|+++|+||++||++...
T Consensus 148 vm~~~------~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-----~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 148 VMTRE------EVITVPEGIDLEEALKVLHEHRIEKLPVVDK-----NGELVGLITMKDIVKRRK 201 (450)
T ss_pred hhCCC------CCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-----CCcEEEEEEhHHhhhccc
Confidence 998 4 6889999999999999999999999999998 899999999999998754
No 98
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.29 E-value=3.5e-11 Score=110.59 Aligned_cols=114 Identities=28% Similarity=0.345 Sum_probs=95.8
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhc------cccchhHhhhcccCCCCcc
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT------SRSKLLVSEMCSADGETCC 706 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~------~~~~~~V~dvm~~~~~~~~ 706 (766)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+......... .....++.++|.+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 75 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK------ 75 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC------
Confidence 4678899999999999999888899999999999999999999987543211000 1223668899987
Q ss_pred CCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 707 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 707 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
++.++.+++++.++++.|.+++.+.+||+| +++++|++|.+|++++
T Consensus 76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~~Gvv~~~di~~~ 121 (121)
T cd04584 76 DVITVHPLDTVEEAALLMREHRIGCLPVVE------DGRLVGIITETDLLRT 121 (121)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEee------CCEEEEEEEHHHhhcC
Confidence 788999999999999999999999999998 5789999999999863
No 99
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=1.5e-11 Score=111.18 Aligned_cols=102 Identities=23% Similarity=0.318 Sum_probs=89.1
Q ss_pred EeCCccHHHHHHHHHHcC-----CcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 637 VLMTTLLIEALTLMLAEK-----QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 637 V~~~~tl~eal~~m~~~~-----~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
+++++++.++++.|.+++ ...+||+|++++++|+++.+|+.+. ..+.++.++|.+ ++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~---------~~~~~v~~~~~~------~~~~i 66 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA---------DPDTPVSDIMDT------DVISV 66 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC---------CCcchHHHHhCC------CCeEE
Confidence 578899999999998776 3689999988999999999998742 123568899887 78899
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 712 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 712 ~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
.+++++.++++.|.+++.+.+||+|+ +++++|+||++|++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~dll~~ 108 (109)
T cd04606 67 SADDDQEEVARLFEKYDLLALPVVDE-----EGRLVGIITVDDVIDV 108 (109)
T ss_pred cCCCCHHHHHHHHHHcCCceeeeECC-----CCcEEEEEEhHHhhhh
Confidence 99999999999999999999999997 7899999999999875
No 100
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=2.9e-11 Score=113.49 Aligned_cols=113 Identities=23% Similarity=0.323 Sum_probs=95.2
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhcc-----------------ccchhHh
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTS-----------------RSKLLVS 695 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~-----------------~~~~~V~ 695 (766)
++.++++++++.++.+.|.+.+++.+||+|++++++|+++..|+.+.......... ....++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 46788999999999999998889999999999999999999999876643211100 0012688
Q ss_pred hhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 696 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 696 dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++|.+ ++..+.+++++.+++++|.+.+.+.+||+| +|+++|++|++|+++
T Consensus 82 ~~~~~------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~iGvit~~dl~~ 131 (132)
T cd04636 82 EIMTK------KVITVDEDTTIEDVARIMSKKNIKRLPVVD------DGKLVGIISRGDIIR 131 (132)
T ss_pred HhccC------CceEECCCCcHHHHHHHHHHCCCCeeEEEE------CCEEEEEEEHHHhhc
Confidence 88887 788999999999999999999999999999 589999999999975
No 101
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.28 E-value=2.1e-11 Score=110.03 Aligned_cols=107 Identities=29% Similarity=0.312 Sum_probs=92.5
Q ss_pred cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
+++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.... ..+.++.++|.+ .+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~--------~~~~~v~~~~~~------~~~~~ 67 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET--------DLDKPVSEVMTP------ENLLT 67 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc--------cCCCCHHHhccc------CceEE
Confidence 3567889999999999999988999999999889999999999986431 123578899977 56666
Q ss_pred CC-CCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 712 TP-NMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 712 ~~-d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
.+ ++++.++++.|.+.+.+.+||+|+ +++++|+||++|+++
T Consensus 68 ~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~~dil~ 109 (110)
T cd04601 68 TVEGTSLEEALELLHEHKIEKLPVVDD-----EGKLKGLITVKDIEK 109 (110)
T ss_pred ecCCCCHHHHHHHHHHhCCCeeeEEcC-----CCCEEEEEEhhhhhc
Confidence 77 999999999999999999999997 789999999999975
No 102
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.28 E-value=2.4e-11 Score=138.48 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=103.6
Q ss_pred cccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecC---CCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCC
Q 004241 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADG 702 (766)
Q Consensus 626 V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~ 702 (766)
.+..|.++++++++++|+.|+++.|.+++++.+||+|+ +++++|+||.+|+.... ..+.+++++|+++
T Consensus 102 ~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--------~~~~~V~eIMt~~- 172 (505)
T PLN02274 102 RRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--------DRETKLSEVMTSD- 172 (505)
T ss_pred ccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--------ccCCcHHHHhccC-
Confidence 34458899999999999999999999999999999997 48999999999996432 1247799999871
Q ss_pred CCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhc
Q 004241 703 ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 761 (766)
Q Consensus 703 ~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~ 761 (766)
.+..++++++++.+++++|.+++.+.+||||+ +++++|+||++|+++....
T Consensus 173 ---~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-----~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 173 ---DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-----DGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred ---CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHhhC
Confidence 12679999999999999999999999999997 7899999999999988754
No 103
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=5.8e-11 Score=107.63 Aligned_cols=110 Identities=27% Similarity=0.380 Sum_probs=93.7
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++++.|.+.+.+.+||+|++ +++|+++.+|+.+.+.... ....+.++.++|.+ ++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~--~~~~~~~~~~~~~~------~~~~v~ 72 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRN--LKPREVPVGEVMST------PLITID 72 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhcc--CCcccCCHHHhcCC------CcEEEC
Confidence 46778999999999999999889999999965 9999999999998654311 01123578899987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+|+ + +++|+|+++|+++
T Consensus 73 ~~~~l~~~~~~~~~~~~~~~~Vv~~-----~-~~~Gvi~~~di~~ 111 (112)
T cd04802 73 PNASLNEAAKLMAKHGIKRLPVVDD-----D-ELVGIVTTTDIVM 111 (112)
T ss_pred CCCCHHHHHHHHHHcCCCeeEEeeC-----C-EEEEEEEhhhhhc
Confidence 9999999999999999999999995 4 9999999999975
No 104
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=3.8e-11 Score=107.42 Aligned_cols=103 Identities=25% Similarity=0.370 Sum_probs=91.1
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++++.|.+++.+.+||+| +++++|+++.+|+.+.. .+.++.++|.+ ++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~---------~~~~~~~~~~~------~~~~v~ 65 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH---------PNRLVADAMTR------EVVTIS 65 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhccc---------ccCCHHHHccC------CCEEEC
Confidence 467789999999999999988888999998 68999999999997632 12468899987 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+| +|+++|+||++|++.
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~~~l~~ 104 (105)
T cd04599 66 PEASLLEAKRLMEEKKIERLPVLR------ERKLVGIITKGTIAL 104 (105)
T ss_pred CCCCHHHHHHHHHHcCCCEeeEEE------CCEEEEEEEHHHhcc
Confidence 999999999999999999999999 589999999999873
No 105
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.28 E-value=4.1e-11 Score=107.54 Aligned_cols=100 Identities=22% Similarity=0.181 Sum_probs=88.7
Q ss_pred eEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeCCC
Q 004241 635 VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTATPN 714 (766)
Q Consensus 635 ~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~d 714 (766)
.++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+.. ..++.++|.+ .+.+++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~----------~~~~~~~~~~------~~~~v~~~ 66 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT----------YGDVVDYIVR------GIPYVRLT 66 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc----------ccchhhhhhc------CCcEEcCC
Confidence 46789999999999999999999999998 9999999999987531 1346778877 68899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 715 MNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 715 ~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++.++++.|.+++.+.+||+| +|+++|++|++|+++
T Consensus 67 ~~l~~a~~~~~~~~~~~~~Vv~------~~~~iGvit~~dl~~ 103 (104)
T cd04594 67 STAEEAWEVMMKNKTRWCPVVD------DGKFKGIVTLDSILD 103 (104)
T ss_pred CCHHHHHHHHHHcCcceEEEEE------CCEEEEEEEHHHhhc
Confidence 9999999999999999999998 589999999999975
No 106
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=3.8e-11 Score=107.85 Aligned_cols=105 Identities=25% Similarity=0.379 Sum_probs=92.5
Q ss_pred cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
+++.+++.++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+... ..+.++.++|.+ .+.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~---------~~~~~~~~~~~~------~~~~v 65 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK---------DPDETVEEIMSK------DLVVA 65 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc---------CccccHHHhCCC------CCeEE
Confidence 46778899999999999998888889999997 999999999998742 113568899987 78899
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 712 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 712 ~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
.+++++.++++.|.+++...+||+|+ +|+++|+++.+|+++
T Consensus 66 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvi~~~di~~ 106 (107)
T cd04610 66 VPEMDIMDAARVMFRTGISKLPVVDE-----NNNLVGIITNTDVIR 106 (107)
T ss_pred CCCCCHHHHHHHHHHhCCCeEeEECC-----CCeEEEEEEHHHhhc
Confidence 99999999999999999999999997 789999999999985
No 107
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=4.9e-11 Score=109.41 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=92.5
Q ss_pred ceeEEeCCccHHHHHHHHHHcC-CcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEe
Q 004241 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTA 711 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~-~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V 711 (766)
+++++++++++.++++.|.+.+ ++.+||+|+ |+++|+++.+|+.+.+..........+.++.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~------~~~~v 74 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP------DPLIV 74 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC------CcEEe
Confidence 4667899999999999998876 889999998 999999999999876542111111124578999988 78899
Q ss_pred CCCCCHHHHHHHHHHcCCC---EEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 712 TPNMNLLSALILMDRYGVN---QVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 712 ~~d~sL~eal~~m~~~~~~---~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
.+++++.++++.|.+++.+ ..+||++ +|+++|+||+.|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvvs~~di~~ 118 (119)
T cd04598 75 EADTPLEEVSRLATGRDSQNLYDGFIVTE-----EGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCCCHHHHHHHHHcCCcccccccEEEee-----CCeEEEEEEHHHHhc
Confidence 9999999999999998864 3468887 799999999999975
No 108
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=5.9e-11 Score=109.18 Aligned_cols=112 Identities=25% Similarity=0.323 Sum_probs=94.3
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhc-------cccchhHhhhcccCCCCc
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-------SRSKLLVSEMCSADGETC 705 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~-------~~~~~~V~dvm~~~~~~~ 705 (766)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+.+....... ...+.++.++|.+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR----- 75 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC-----
Confidence 4678899999999999999888999999997 99999999999987654311100 1123568888887
Q ss_pred cCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 706 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 706 ~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
++.++++++++.+++++|.+.+.+.+||+| +|+++|++|++|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 -PVITIEPDTSVSDVASLMLENNIGGLPVVD------DGKLVGIVTRTDILR 120 (121)
T ss_pred -CceEECCCCcHHHHHHHHHHcCCCcccEEE------CCEEEEEEEHHHhhc
Confidence 788999999999999999999999999999 479999999999975
No 109
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.25 E-value=3.8e-11 Score=137.42 Aligned_cols=119 Identities=29% Similarity=0.272 Sum_probs=106.7
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcc-cC
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCS-AD 701 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~-~~ 701 (766)
-..++++|.+++.++++++++.++++.|.+++++.+||+|++++++|+|+.+|+.... ..+.++.++|+ +
T Consensus 86 vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~--------~~~~~V~dim~~~- 156 (486)
T PRK05567 86 VKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET--------DLSQPVSEVMTKE- 156 (486)
T ss_pred hhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc--------cCCCcHHHHcCCC-
Confidence 3468899999999999999999999999999999999999999999999999996421 12357999998 5
Q ss_pred CCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 702 GETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 702 ~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++...
T Consensus 157 -----~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-----~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 157 -----RLVTVPEGTTLEEALELLHEHRIEKLPVVDD-----NGRLKGLITVKDIEKAEE 205 (486)
T ss_pred -----CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEhHHhhhhhh
Confidence 6889999999999999999999999999998 899999999999998653
No 110
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.24 E-value=8.4e-11 Score=106.11 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=88.9
Q ss_pred cceeEEeCCccHHHHHHHHHHcCCcEEEEecC---CCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCC
Q 004241 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVP 708 (766)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~ 708 (766)
+....+++++++.++.+.+.+.+.+.+||+|+ +++++|+|+.+|+.+...+ +|.+ ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------~m~~------~~ 61 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------YIDP------SP 61 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH--------------hccC------CC
Confidence 34677899999999999999988889999998 6999999999998765421 6776 68
Q ss_pred eEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 709 CTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 709 ~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
.++++++++.++++.|.+++.+.+||++ +|+++|+||++|++++
T Consensus 62 ~~v~~~~~l~~~~~~~~~~~~~~~pVv~------~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 62 FTVSPRTSLEKVHQLFRKLGLRHLLVVD------EGRLVGIITRKDLLKA 105 (105)
T ss_pred ceECCCCcHHHHHHHHHHcCCCEEEEEE------CCeEEEEEEhhhhhcC
Confidence 8999999999999999999999999996 6899999999999763
No 111
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.24 E-value=1.2e-10 Score=106.22 Aligned_cols=113 Identities=30% Similarity=0.394 Sum_probs=98.1
Q ss_pred cccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccC
Q 004241 628 EVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCV 707 (766)
Q Consensus 628 diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~ 707 (766)
+.|.+++.++.++.++.++...|.+++...+||+++ ++++|++|.+|+.+........ ..++.++|+. +
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~----~~~v~~v~~~------~ 71 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKR----LLPVKEVMTK------P 71 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCc----cccHHHhccC------C
Confidence 445588999999999999999999999999999984 3899999999999887642211 1268999997 7
Q ss_pred CeEeCCCCCHHHHHHHHHH-cCCCEEEEEeccCCCCCC-cEEEEEeHHHHH
Q 004241 708 PCTATPNMNLLSALILMDR-YGVNQVPVVMEHIPGQRG-QLVGLLDRESII 756 (766)
Q Consensus 708 ~~~V~~d~sL~eal~~m~~-~~~~~lpVVde~~~~~~g-~lvGIVt~~DIl 756 (766)
+.++.+++++.++.+.|.+ ++.+.+||+|+ ++ +++|++|++|++
T Consensus 72 ~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-----~~~~lvGivt~~di~ 117 (117)
T COG0517 72 VVTVDPDTPLEEALELMVERHKIRRLPVVDD-----DGGKLVGIITLSDIL 117 (117)
T ss_pred cEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-----CCCeEEEEEEHHHcC
Confidence 8899999999999999999 79999999997 65 999999999973
No 112
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.23 E-value=9.3e-11 Score=105.61 Aligned_cols=108 Identities=24% Similarity=0.276 Sum_probs=91.0
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+....... ..+.++.++|.+ ++..++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~~~~~~~------~~~~v~ 71 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA---KFSLPVREVMGE------PLPTVD 71 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc---ccCcCHHHHhcC------CCceeC
Confidence 4678899999999999999999999999997 999999999999987643211 113568889987 678999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++.++|.+ .. .+||+|+ +|+++|+||++|+++
T Consensus 72 ~~~~l~~~~~~~~~-~~-~~~vv~~-----~~~~~Gvvt~~di~~ 109 (110)
T cd04609 72 PDAPIEELSELLDR-GN-VAVVVDE-----GGKFVGIITRADLLK 109 (110)
T ss_pred CCCcHHHHHHHHHh-CC-ceeEEec-----CCeEEEEEeHHHhhc
Confidence 99999999999998 43 4789986 789999999999975
No 113
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.21 E-value=2.2e-10 Score=102.60 Aligned_cols=111 Identities=31% Similarity=0.398 Sum_probs=94.7
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+........ ....+.++|.. ++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~---~~~~~~~~~~~------~~~~~~ 72 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD---PLVTVGDVMTR------DVVTVS 72 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC---ccccHHHHhcC------CceecC
Confidence 456788999999999999998889999999989999999999998776532111 11226778877 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+.+.+.+||+|+ +++++|+++++|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~~dl~~ 112 (113)
T cd02205 73 PDTSLEEAAELMLEHGIRRLPVVDD-----EGRLVGIVTRSDILR 112 (113)
T ss_pred CCcCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEHHHhhc
Confidence 9999999999999999999999997 799999999999975
No 114
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.21 E-value=7.1e-11 Score=134.61 Aligned_cols=120 Identities=17% Similarity=0.174 Sum_probs=104.6
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCC---CcEEEEEehhhHHHHHHHHhhhccccchhHhhhccc
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSA 700 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~---g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~ 700 (766)
.+.++.|..++.++++++++.++++.|.+++++.+||+|++ ++++|+||.+|+.... ..+.+++++|++
T Consensus 96 k~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--------~~~~~V~diMt~ 167 (495)
T PTZ00314 96 KRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--------DKSTPVSEVMTP 167 (495)
T ss_pred cccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--------cCCCCHHHhhCC
Confidence 45778899999999999999999999999999999999974 8999999999987321 124679999985
Q ss_pred CCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 701 DGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 701 ~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
. +++.++++++++.+++++|.+++.+.+||||+ +++++|+||++||++...
T Consensus 168 ~----~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-----~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 168 R----EKLVVGNTPISLEEANEVLRESRKGKLPIVND-----NGELVALVSRSDLKKNRG 218 (495)
T ss_pred c----CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-----CCcEEEEEEehHhhhccc
Confidence 1 14788999999999999999999999999997 889999999999998753
No 115
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.9e-10 Score=109.84 Aligned_cols=112 Identities=26% Similarity=0.361 Sum_probs=94.4
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhc-------------------------
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT------------------------- 687 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~------------------------- 687 (766)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5678999999999999999999999999997 99999999999987764321000
Q ss_pred ----cccchhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 688 ----SRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 688 ----~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
.....++.++|.+ ++.++++++++.++++.|.+.+...+||++ +++++|++|++|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~------~~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTK------KVITISPDASIEDAAELMVRHKIKRLPVVE------DGRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCC------CCeEECCCCcHHHHHHHHHHcCCCEEEEEE------CCEEEEEEEHHHhhc
Confidence 0023567788877 789999999999999999999999999999 578999999999975
No 116
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=2.4e-10 Score=102.72 Aligned_cols=104 Identities=25% Similarity=0.323 Sum_probs=90.6
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
+..++.+++++.++++.|.+.+++.+||+|++++++|+++.+++.+.. .+.++.++|.+ ++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~---------~~~~~~~~~~~------~~~~v~ 66 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP---------EEEQLALLMTR------DPPTVS 66 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc---------ccchHHHHhcC------CCceEC
Confidence 456788899999999999988889999999889999999999987421 12457788877 788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 713 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
+++++.++++.|.+++.+.+||+| +|+++|++|++|+++
T Consensus 67 ~~~~l~~~~~~~~~~~~~~~~Vvd------~~~~~G~it~~d~~~ 105 (106)
T cd04638 67 PDDDVKEAAKLMVENNIRRVPVVD------DGKLVGIVTVADIVR 105 (106)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEE------CCEEEEEEEHHHhhc
Confidence 999999999999999999999998 469999999999875
No 117
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.17 E-value=9.4e-11 Score=130.54 Aligned_cols=119 Identities=21% Similarity=0.285 Sum_probs=108.2
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHc-----CCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhc
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAE-----KQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMC 698 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~-----~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm 698 (766)
-+++.+|++++++++++.|++++++.+++. ....++|+|+++++.|+++.+++... .++.+++++|
T Consensus 132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a---------~~~~~i~~im 202 (451)
T COG2239 132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA---------EPDELLKDLM 202 (451)
T ss_pred hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC---------CcHhHHHHHh
Confidence 479999999999999999999999999854 35789999999999999999998743 2457899999
Q ss_pred ccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhcc
Q 004241 699 SADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 762 (766)
Q Consensus 699 ~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~~ 762 (766)
.+ .+.+++++++.+++.+.|++++.-.+||||+ +++++|+||.+|+++..+++
T Consensus 203 ~~------~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-----~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 203 ED------DVVSVLADDDQEEVARLFEKYDLLAVPVVDE-----DNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred cc------cceeecccCCHHHHHHHHHHhCCeecceECC-----CCceeeeeeHHHHHHHHHHH
Confidence 99 7899999999999999999999999999998 89999999999999988765
No 118
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.17 E-value=1.7e-10 Score=134.63 Aligned_cols=127 Identities=24% Similarity=0.239 Sum_probs=107.0
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhh-----------------
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK----------------- 686 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~----------------- 686 (766)
.+|+|+|.+++.++++++++.+|++.|.+++.+.+||+|++|+++|+||.+|+.+.+......
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L 147 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTL 147 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999998754431100
Q ss_pred ----------------------------------------cc--------------------------------------
Q 004241 687 ----------------------------------------TS-------------------------------------- 688 (766)
Q Consensus 687 ----------------------------------------~~-------------------------------------- 688 (766)
..
T Consensus 148 ~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ 227 (546)
T PRK14869 148 DGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVT 227 (546)
T ss_pred CcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCe
Confidence 00
Q ss_pred ---------------ccchhHhhhcc-cCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeH
Q 004241 689 ---------------RSKLLVSEMCS-ADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDR 752 (766)
Q Consensus 689 ---------------~~~~~V~dvm~-~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~ 752 (766)
....+|+++|+ + ++.++++++++.++.+.|.+++.+++||||+ +|+++|+||+
T Consensus 228 ii~t~~dt~~t~~~l~~~~~V~~iM~~~------~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-----~g~lvGiit~ 296 (546)
T PRK14869 228 VISTPYDTFTTARLINQSIPVSYIMTTE------DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-----DGKVVGVISR 296 (546)
T ss_pred EEEecccHHHHHHHhhcCCCHHHhccCC------CcEEECCCCcHHHHHHHHHhcCCCceEEEcC-----CCCEEEEEEH
Confidence 00123555665 4 7899999999999999999999999999997 8999999999
Q ss_pred HHHHHHhhc
Q 004241 753 ESIILACRF 761 (766)
Q Consensus 753 ~DIl~~~~~ 761 (766)
+|+++..++
T Consensus 297 ~dl~~~~~~ 305 (546)
T PRK14869 297 YHLLSPVRK 305 (546)
T ss_pred HHhhccccC
Confidence 999987654
No 119
>PRK11573 hypothetical protein; Provisional
Probab=99.16 E-value=2.9e-10 Score=127.29 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=106.5
Q ss_pred hcccccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEecCC-CcEEEEEehhhHHHHHHHHhhhccccchhHhh
Q 004241 620 LKRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKLLVSE 696 (766)
Q Consensus 620 ~l~~~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~d 696 (766)
.+++.+|+|+|++ ++..++.+++++|+++.+.+++++++||++++ ++++|++..+|+.....+.. ......+.+
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~---~~~~~~l~~ 259 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK---EFTKENMLR 259 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC---cCCHHHHHh
Confidence 3667799999998 78999999999999999999999999999764 88999999999987543211 011133446
Q ss_pred hcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhc
Q 004241 697 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 761 (766)
Q Consensus 697 vm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~ 761 (766)
++++ +..|++++++.++++.|++++.+...|+|| .|...|+||.+||++.+-.
T Consensus 260 ~~r~-------~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-----yG~~~GiVTleDilEeivG 312 (413)
T PRK11573 260 AADE-------IYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-----YGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred hccC-------CeEeCCCCcHHHHHHHHHhcCCeEEEEEec-----CCCeEEEeeHHHHHHHHhC
Confidence 6554 789999999999999999999999999998 8999999999999997643
No 120
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.14 E-value=2.5e-10 Score=107.82 Aligned_cols=109 Identities=43% Similarity=0.634 Sum_probs=82.8
Q ss_pred cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccc--------cchhHhhhcccCC-
Q 004241 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSR--------SKLLVSEMCSADG- 702 (766)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~--------~~~~V~dvm~~~~- 702 (766)
+++.++++++++.++++.|.+++.+.+||+|++++++|++|.+|+.+........... ....+.++|.+..
T Consensus 1 ~~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred CCceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 3578899999999999999999999999999999999999999999877542211100 0112445553100
Q ss_pred --CCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCC
Q 004241 703 --ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIP 740 (766)
Q Consensus 703 --~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~ 740 (766)
.+.+++.++++++++.+|++.|.+++.+++||+|++++
T Consensus 81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~ 120 (133)
T cd04592 81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD 120 (133)
T ss_pred hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcC
Confidence 00126789999999999999999999999999997443
No 121
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.99 E-value=3.6e-09 Score=119.50 Aligned_cols=125 Identities=22% Similarity=0.186 Sum_probs=105.6
Q ss_pred hcccccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEec-CCCcEEEEEehhhHHHHHHHHhhhccccchhHhh
Q 004241 620 LKRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVD-NDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSE 696 (766)
Q Consensus 620 ~l~~~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd-~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~d 696 (766)
.+.+.+|+++|++ ++..++.+.+++++.+.+.+++++++||+| +.++++|+++.+|++....+... ......
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-----~~~~~~ 276 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-----DLDLRV 276 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-----ccchhh
Confidence 4667799999998 788899999999999999999999999999 56889999999999987765211 011112
Q ss_pred hcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhc
Q 004241 697 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 761 (766)
Q Consensus 697 vm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~ 761 (766)
... ++..|++++++.++++.|++.+.+...|+|| .|...|+||.+||++.+-.
T Consensus 277 ~~~-------~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-----yG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 277 LVR-------PPLFVPETLSLSDLLEEFREERTHMAIVVDE-----YGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred ccc-------CCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-----CCCeEEEeEHHHHHHHHhC
Confidence 222 4789999999999999999999999999998 8999999999999998754
No 122
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.92 E-value=4.4e-09 Score=110.94 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=106.0
Q ss_pred cccccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEecCC-CcEEEEEehhhHHHHHHHHhhhccccchhHhhh
Q 004241 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEM 697 (766)
Q Consensus 621 l~~~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dv 697 (766)
+++++|+|+|.+ ++..++.|++.+++++.+.+..|+++|+..++ ++.+|++..+|+.+.+.+... ..+..+...
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~---~~k~d~~~~ 273 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE---FTKEDILRA 273 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc---ccHhHHHHH
Confidence 677899999988 68889999999999999999999999999754 669999999999999875321 112223333
Q ss_pred cccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 698 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 698 m~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
.. +|.+|++.+++.+-+..|++++.+.-.|||| .|.+.|+||.+||++..-
T Consensus 274 a~-------epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-----YG~i~GLVTLEDIlEEIV 324 (423)
T COG4536 274 AD-------EPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-----YGDIQGLVTLEDILEEIV 324 (423)
T ss_pred hc-------CCeecCCCCcHHHHHHHHHHhcceEEEEEec-----cCcEEeeeeHHHHHHHHh
Confidence 23 5899999999999999999999999999998 999999999999998764
No 123
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.73 E-value=3.4e-08 Score=78.46 Aligned_cols=56 Identities=29% Similarity=0.333 Sum_probs=53.0
Q ss_pred cccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHH
Q 004241 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (766)
Q Consensus 626 V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~ 681 (766)
|+|+|+++++++++++++.++++.|.+++.+.+||+|++++++|++|.+|+.+.+.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 57899999999999999999999999999999999999999999999999998763
No 124
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.68 E-value=5.8e-08 Score=77.10 Aligned_cols=55 Identities=35% Similarity=0.644 Sum_probs=51.8
Q ss_pred HhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHh
Q 004241 694 VSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 759 (766)
Q Consensus 694 V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~ 759 (766)
|+++|++ ++.++++++++.++.+.|.+++.+++||+|+ +++++|+||++|++++.
T Consensus 1 v~~~m~~------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP------PPITVSPDDSLEEALEIMRKNGISRLPVVDE-----DGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS------SSEEEETTSBHHHHHHHHHHHTSSEEEEEST-----TSBEEEEEEHHHHHHHH
T ss_pred CeECCcC------CCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-----CCEEEEEEEHHHHHhhh
Confidence 5788998 8999999999999999999999999999997 89999999999999875
No 125
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.64 E-value=1.6e-07 Score=103.66 Aligned_cols=123 Identities=22% Similarity=0.201 Sum_probs=99.5
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchh-HhhhcccCCCCccCCeEe
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLL-VSEMCSADGETCCVPCTA 711 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~-V~dvm~~~~~~~~~~~~V 711 (766)
++..+..++++.+|++.|.+.+.+.+||+|++|+.+|.++..|+........-. ..+.. +++.-...+.-...++++
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~--~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYN--NLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccC--ccchhHHHHHhhhcccccCccEEE
Confidence 688899999999999999999999999999999999999999998776542211 11222 334333222222356899
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhcc
Q 004241 712 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 762 (766)
Q Consensus 712 ~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~~ 762 (766)
.++++|.++++.|..++++++.|||+ +|+++|+||..|++.....+
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd~-----~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVDE-----DGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEcC-----CCcEEEEeeHHHHHHHHHhC
Confidence 99999999999999999999999997 89999999999999987654
No 126
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.62 E-value=5.7e-08 Score=103.25 Aligned_cols=110 Identities=23% Similarity=0.334 Sum_probs=98.2
Q ss_pred cceeEEeCCccHHHHHHHHHHcCCcEEEEecC---CCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCC
Q 004241 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVP 708 (766)
Q Consensus 632 ~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~ 708 (766)
.++++++|+.++.++++.-.++++..+||.++ ..|++|+||.+|+... . .....++|+|++ ++
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~-------~~~~~~~~vmt~------~~ 181 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-E-------DNSLLVSDVMTK------NP 181 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-h-------cccchhhhhccc------cc
Confidence 47788999999999999999999999999975 4789999999998765 2 135789999999 67
Q ss_pred eEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 709 CTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 709 ~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
++.+.+.++.++-+++++++...+||||+ +|+++-+++++|+.+...
T Consensus 182 ~~~~~gi~l~~~neiL~~~kkGkl~iv~~-----~gelva~~~rtDl~k~~~ 228 (503)
T KOG2550|consen 182 VTGAQGITLKEANEILKKIKKGKLPVVDD-----KGELVAMLSRTDLMKNRD 228 (503)
T ss_pred ccccccccHHHHHHHHHhhhcCCcceecc-----CCceeeeeehhhhhhhcC
Confidence 89999999999999999999999999998 899999999999988653
No 127
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.61 E-value=3.5e-07 Score=100.68 Aligned_cols=113 Identities=26% Similarity=0.264 Sum_probs=95.5
Q ss_pred cccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCe
Q 004241 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPC 709 (766)
Q Consensus 630 M~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~ 709 (766)
|........++.+..++++.|...+.+...|+|+++++.|.++.+++...... ...+.+.+.+ ...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~------~~~ 313 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK--------AQGLQDVLID------DIY 313 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhc--------CCchhhhhcc------CCc
Confidence 33344456677789999999999999999999999999999999998766532 1346777776 678
Q ss_pred EeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhcc
Q 004241 710 TATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 762 (766)
Q Consensus 710 ~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~~ 762 (766)
++++++++.+++..|.+++.. +||+|+ +|+++|+||+.++++++...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 314 TVDAGTLLRETVRKVLKAGIK-VPVVDE-----DQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred eECCCCcHHHHHHHHHhCCCC-EEEECC-----CCcEEEEEEHHHHHHHHHhh
Confidence 999999999999999999999 999997 89999999999999987643
No 128
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=3.4e-07 Score=102.04 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=99.0
Q ss_pred cccccccccccce---eEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhc
Q 004241 622 RRVFVSEVMRTRY---VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMC 698 (766)
Q Consensus 622 ~~~~V~diM~~~~---~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm 698 (766)
+..++.++|.+.. +...++.+..++++.|.+.+.+.++|+|+++++.|+++.+++.+.... ...+.+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~ 343 (400)
T PRK10070 272 QVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQ--------QQGLDAAL 343 (400)
T ss_pred cccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhc--------CCchhhhh
Confidence 3456777775432 223466789999999999999999999999999999999999765432 13466777
Q ss_pred ccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhcc
Q 004241 699 SADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 762 (766)
Q Consensus 699 ~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~~ 762 (766)
.+ ...++++++++.+++..+.++... +||||+ +|+++|+||+.++++++.+.
T Consensus 344 ~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 344 ID------APLAVDAQTPLSELLSHVGQAPCA-VPVVDE-----DQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred cc------CCceeCCCCCHHHHHHHHHhCCCc-EEEECC-----CCcEEEEEEHHHHHHHHHhc
Confidence 66 678999999999999999998877 999997 89999999999999988654
No 129
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.58 E-value=1e-07 Score=94.52 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=106.3
Q ss_pred cccccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEecC-CCcEEEEEehhhHHHHHHHHhhhccccchhHhhh
Q 004241 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDN-DNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEM 697 (766)
Q Consensus 621 l~~~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~-~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dv 697 (766)
..+++|+|+|.+ ...+++.+.++.+.+..+.+..++++||+.+ .+.+.|++..+|+++.+.... ..-.++++
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~-----~~F~i~~l 138 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA-----EPFDIKEL 138 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc-----ccccHHHh
Confidence 456799999988 6788999999999999999999999999975 467999999999999875421 12446677
Q ss_pred cccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhc
Q 004241 698 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 761 (766)
Q Consensus 698 m~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~ 761 (766)
.++ ...|+++..+...++-|+..+.+...|+|| -|-+-|.||.+|+++..-.
T Consensus 139 LRP-------av~VPESKrvd~lLkeFR~~RnHMAIViDE-----fGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 139 LRP-------AVVVPESKRVDRLLKEFRSQRNHMAIVIDE-----FGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred ccc-------ceecccchhHHHHHHHHHhhcCceEEEEec-----cCCeeeeEEHHHHHHHHhc
Confidence 665 688999999999999999999999999998 8999999999999987643
No 130
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.43 E-value=3.4e-07 Score=102.07 Aligned_cols=193 Identities=15% Similarity=0.197 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhc-CCchhHHHH---HH-----HHHHHH-HHHHhcccccC
Q 004241 349 ELPLYLLLGVLCGLISLTLSRCTTYMLAIV-----DNLQKDN-GIPKAVFPV---MG-----GLAVGL-IALMFPEILYW 413 (766)
Q Consensus 349 el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~---lg-----gllvg~-i~~~~P~~~g~ 413 (766)
-+..+.++|++.||+|.+..-..+.+..+- ..+.+.. ..--++... +| .++-++ ++++-|...|+
T Consensus 87 kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGS 166 (762)
T KOG0474|consen 87 KWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGS 166 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCC
Confidence 356788999999999987765544433210 0011110 000011111 11 111122 23567999999
Q ss_pred CHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHh----hhcCCCcc
Q 004241 414 GFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFA----IAQSNPTI 489 (766)
Q Consensus 414 G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~----~~~~~~~~ 489 (766)
|.++++.-+++-. .+....+..++.|++....+.+.|.-.|.++|.+..||++|+.+||.-..- +-. .+++
T Consensus 167 GIPevK~YLNGV~----iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~-fr~F 241 (762)
T KOG0474|consen 167 GIPEVKCYLNGVK----IPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRW-FRYF 241 (762)
T ss_pred CCchhhhhhcCcc----CcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhh-hhhh
Confidence 9999998888742 233345667889999999999999999999999999999999998752210 000 0011
Q ss_pred ccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCC---chhHHHHHHHHHHHHHHHh
Q 004241 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQD---YRIVLPLLGAVGLSSWFTS 550 (766)
Q Consensus 490 ~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg~---~~~llP~mia~~va~~v~~ 550 (766)
.+.-+..-++.||+||..++++|||+.++++.+|-.-+ ..++-=+.++++++.++.+
T Consensus 242 ----rnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 242 ----RNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred ----cccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 13457788999999999999999999999999995432 2355555666666665554
No 131
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.35 E-value=2.5e-07 Score=105.30 Aligned_cols=113 Identities=15% Similarity=0.236 Sum_probs=94.5
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCC
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADG 702 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~ 702 (766)
+.+++++|++++.++++++++.|+++.|++++...+||+|++|+++|+||.+|+.+.+.+. ..+|+|+.
T Consensus 194 ~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~---------~~ed~~~~-- 262 (449)
T TIGR00400 194 EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE---------ATEDFYMI-- 262 (449)
T ss_pred CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh---------hHHHHHHh--
Confidence 3479999999999999999999999999999999999999999999999999999888652 23688876
Q ss_pred CCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 703 ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 703 ~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
...+..+++.+.++...|.+++..+++|.- +.|+++ ..+++.++
T Consensus 263 ----~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~---------~~~~~t-~~ii~~f~ 306 (449)
T TIGR00400 263 ----AAVKPLDDSYFDTSILVMAKNRIIWLLVLL---------VSSTFT-ATIISNYE 306 (449)
T ss_pred ----cCCCCCcchhhhchHHHHHHhccchHHHHH---------HHHHHH-HHHHHHHH
Confidence 444445678889999999999999988863 677887 66766654
No 132
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.30 E-value=2e-06 Score=88.21 Aligned_cols=80 Identities=18% Similarity=0.304 Sum_probs=67.1
Q ss_pred EehhhHHHHHHHHhhh---ccccchhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEE
Q 004241 671 LTLGDIEEFSKYAQAK---TSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLV 747 (766)
Q Consensus 671 Vt~~dL~~~l~~~~~~---~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lv 747 (766)
|+++|+.+.+.+.+.. ....+.+..|+|++ +++++++|+++++|.+.+.+++++.+||+|| +.+++
T Consensus 221 IdrddLe~llr~~elqa~~R~~~~LtcadIMSr------dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-----~~rl~ 289 (382)
T COG3448 221 IDRDDLERLLRETELQALRRRMGELTCADIMSR------DVVTVSTDTSIDHARKLLQEHRIKALPVLDE-----HRRLV 289 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc------cceecCCcCChHHHHHHHHHcCccccccccc-----cccee
Confidence 7888888777542211 12345789999999 8999999999999999999999999999998 88999
Q ss_pred EEEeHHHHHHHhhc
Q 004241 748 GLLDRESIILACRF 761 (766)
Q Consensus 748 GIVt~~DIl~~~~~ 761 (766)
|+||++|+.+..+.
T Consensus 290 GiVt~~dl~~~a~~ 303 (382)
T COG3448 290 GIVTQRDLLKHARP 303 (382)
T ss_pred eeeeHHHHhhccCc
Confidence 99999999985543
No 133
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.06 E-value=6e-06 Score=83.41 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=56.6
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~ 681 (766)
.+.+|+|+|+++++++++|+.+.||++.|..++++++.|+|++|+++|++|+.|+++.+.
T Consensus 232 ~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 232 LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 356899999999999999999999999999999999999999999999999999998764
No 134
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.98 E-value=2.5e-05 Score=89.20 Aligned_cols=172 Identities=19% Similarity=0.245 Sum_probs=117.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cch-hHHHHHHHHHHHHH-------HHHhcccccCCHHHH
Q 004241 348 GELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNG-IPK-AVFPVMGGLAVGLI-------ALMFPEILYWGFENV 418 (766)
Q Consensus 348 ~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~-~~~-~~~~~lggllvg~i-------~~~~P~~~g~G~~~i 418 (766)
.++.+..+||++.+++++..-..+....+....+.+... ... ..+..-.+..++++ -++.|+.-|+|...+
T Consensus 94 eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPEm 173 (931)
T KOG0476|consen 94 EDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPEM 173 (931)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHheeccccccCCChhH
Confidence 456778999999999999888777666655443332221 111 11112223333332 235699999999999
Q ss_pred HHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhcCCCccccccccccc
Q 004241 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (766)
Q Consensus 419 ~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (766)
+.++.+-.... ..-+..++.|++..++++|||.|-|-.+|-+.|++...+.++++..-.+.+. +. ...-
T Consensus 174 KtIlrGv~Lke----YLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~---~e----nesR 242 (931)
T KOG0476|consen 174 KTILRGVILKE----YLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGF---FE----NESR 242 (931)
T ss_pred HHHHHhhhHHh----hhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhcccc---cc----Ccch
Confidence 98887742211 1234457899999999999999999999999999999999999875333221 10 1112
Q ss_pred hHHHHHHHHHHHHHHhcCchHHHHHHHHHHhC
Q 004241 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ 530 (766)
Q Consensus 499 p~~~alvGaaa~lag~~~aPls~~viv~Eltg 530 (766)
-.-+-.+|.|-..|.++.||+.++++-.|.|-
T Consensus 243 ~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS 274 (931)
T KOG0476|consen 243 NMEMLAAACAVGVACTFSAPIGGVLFSIEVTS 274 (931)
T ss_pred HHHHHHHHhhhhheeeecCccceeEEEEEEee
Confidence 23345566777788899999999999999985
No 135
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.95 E-value=1e-05 Score=73.94 Aligned_cols=55 Identities=33% Similarity=0.364 Sum_probs=51.8
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.+++|+|.+++.++++++++.++++.|.+++...+||+|++++++|+|+.+|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 6799999999999999999999999999999999999999999999999999863
No 136
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.92 E-value=1.7e-05 Score=71.78 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=51.5
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.++.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 4688999999999999999999999999999999999999899999999999864
No 137
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.87 E-value=3.9e-06 Score=98.18 Aligned_cols=129 Identities=14% Similarity=0.169 Sum_probs=96.3
Q ss_pred hhhccccccccccc-cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHH------hhh-cc-
Q 004241 618 EELKRRVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA------QAK-TS- 688 (766)
Q Consensus 618 ~~~l~~~~V~diM~-~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~------~~~-~~- 688 (766)
.......+|+++|+ +++.++++++++.++.+.|.+++++.+||+|++|+++|++|.+|+.+..... ... +.
T Consensus 240 ~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~ 319 (546)
T PRK14869 240 RLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAV 319 (546)
T ss_pred HHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccc
Confidence 34456789999999 8999999999999999999999999999999999999999999998754320 000 00
Q ss_pred --c---------cchhHhhhcccCCCCccCCeEe---CCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHH
Q 004241 689 --R---------SKLLVSEMCSADGETCCVPCTA---TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRES 754 (766)
Q Consensus 689 --~---------~~~~V~dvm~~~~~~~~~~~~V---~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~D 754 (766)
. ...+++++|+. .+..+ +...+...+.++|.+.+....|++. ...+.||++-++
T Consensus 320 ~~~~~~~i~~iiDHH~~~~~~~~------~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia------~~ll~gIlsDT~ 387 (546)
T PRK14869 320 EGIEEAEILEIIDHHRLGDIQTS------NPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA------GLLLAAILSDTL 387 (546)
T ss_pred cchhhceEEEEecCCccCCCCCC------CCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH------HHHHHHHHHHhc
Confidence 0 01123445544 34333 3356667889999999998888886 457899998888
Q ss_pred HHHH
Q 004241 755 IILA 758 (766)
Q Consensus 755 Il~~ 758 (766)
.++.
T Consensus 388 ~f~~ 391 (546)
T PRK14869 388 LFKS 391 (546)
T ss_pred CccC
Confidence 7764
No 138
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.86 E-value=3.1e-05 Score=72.82 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=53.9
Q ss_pred chhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhc
Q 004241 691 KLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 761 (766)
Q Consensus 691 ~~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~ 761 (766)
...++++|+. +.+.+++|+++.++.++|+++++.++||++ +++++|-||..||.+..-+
T Consensus 64 ~ita~~iM~s------pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~------~~k~VGsItE~~iv~~~le 122 (187)
T COG3620 64 RITAKTIMHS------PVVSVSPDDSISDVVNLMRDKGISQLPVIE------EDKVVGSITENDIVRALLE 122 (187)
T ss_pred eEeHhhhccC------CeeEECchhhHHHHHHHHHHcCCccCceee------CCeeeeeecHHHHHHHHhc
Confidence 3678899998 899999999999999999999999999999 5899999999999988643
No 139
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.80 E-value=3.4e-05 Score=70.16 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=52.6
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...+++++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+.+|+.+
T Consensus 57 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 346789999999999999999999999999999999999998899999999999863
No 140
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.76 E-value=6.2e-05 Score=68.77 Aligned_cols=55 Identities=29% Similarity=0.386 Sum_probs=50.6
Q ss_pred hhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHH
Q 004241 692 LLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 757 (766)
Q Consensus 692 ~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~ 757 (766)
.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|+ +|+++|+|+.+|+.+
T Consensus 58 ~~v~dim~~------~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-----~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR------KPVTARPNDPLREALNLMHEHNIRTLPVVDD-----DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC------CCCEECCcCcHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHhhc
Confidence 568999988 7889999999999999999999999999997 789999999999864
No 141
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.71 E-value=0.00016 Score=82.50 Aligned_cols=100 Identities=28% Similarity=0.247 Sum_probs=72.5
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCC
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGE 703 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~ 703 (766)
.+++|+|+++++++++++++.|+++.|.+++.+.+||+|++++++|+||.+|+.+...............+...
T Consensus 148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aa------ 221 (479)
T PRK07807 148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAA------ 221 (479)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhh------
Confidence 46899999999999999999999999999999999999999999999999999987643210000001112111
Q ss_pred CccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEec
Q 004241 704 TCCVPCTATPNMNLLSALILMDRYGVNQVPVVME 737 (766)
Q Consensus 704 ~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde 737 (766)
+.......+..+.+.+.+.+. .++|-
T Consensus 222 -------v~~~~~~~~~a~~Lv~aGvd~-i~~D~ 247 (479)
T PRK07807 222 -------VGINGDVAAKARALLEAGVDV-LVVDT 247 (479)
T ss_pred -------hccChhHHHHHHHHHHhCCCE-EEEec
Confidence 222234556677777788875 56664
No 142
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.67 E-value=9.2e-05 Score=85.16 Aligned_cols=118 Identities=33% Similarity=0.339 Sum_probs=83.7
Q ss_pred ccccccccc-cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhc-cccchhHhhhccc
Q 004241 623 RVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-SRSKLLVSEMCSA 700 (766)
Q Consensus 623 ~~~V~diM~-~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~-~~~~~~V~dvm~~ 700 (766)
..+++++|+ ++++++++++++.++++.|.+++.+.+||+|++++++|+||.+|+.+......... ...+..|...|..
T Consensus 146 ~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~ 225 (486)
T PRK05567 146 SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGV 225 (486)
T ss_pred CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeeccc
Confidence 357899998 68899999999999999999999999999999999999999999998754211000 0011233333332
Q ss_pred CCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 701 DGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 701 ~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
++ ++ .+..+.|.+.+.+. +|+|.. +++..++++.-+.++.
T Consensus 226 -----------~~-~~-~e~a~~L~~agvdv-ivvD~a----~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 226 -----------GA-DN-EERAEALVEAGVDV-LVVDTA----HGHSEGVLDRVREIKA 265 (486)
T ss_pred -----------Cc-ch-HHHHHHHHHhCCCE-EEEECC----CCcchhHHHHHHHHHh
Confidence 22 22 66777788889994 577742 4677777766555543
No 143
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.65 E-value=0.00025 Score=78.56 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=97.6
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEec-CCCcEEEEEehhhHHHHHHHHhhhcc---ccchhHhhhcccCCCCccCC
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVD-NDNILIGLLTLGDIEEFSKYAQAKTS---RSKLLVSEMCSADGETCCVP 708 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd-~~g~lvGiVt~~dL~~~l~~~~~~~~---~~~~~V~dvm~~~~~~~~~~ 708 (766)
++..+.+..++-++...+.+++++.+||.| +.+++..++|.+.+++.+......-. ....++.|.-.. ...+.
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig---~~~~i 239 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIG---TWSNI 239 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcc---hhhhh
Confidence 338889999999999999999999999999 56899999999999998865432211 011223332111 12257
Q ss_pred eEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhccCC
Q 004241 709 CTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFCDF 764 (766)
Q Consensus 709 ~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~~d~ 764 (766)
..+.+++++.+|+++|.+.++..+||||+ +|+.+|++++.|+....++.++
T Consensus 240 ~~i~~~~~v~~al~~m~~~~is~lpvV~~-----~g~~v~~~s~~Dv~~l~~~~~~ 290 (381)
T KOG1764|consen 240 ASISEDTPVIEALKIMSERRISALPVVDE-----NGKKVGNYSRFDVIHLAREGTY 290 (381)
T ss_pred eeecCCCcHHHHHHHHHhcCcCcceEEcC-----CCceecceehhhhhhhhhcCcc
Confidence 88999999999999999999999999998 7888999999999988776643
No 144
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.63 E-value=0.00023 Score=81.16 Aligned_cols=59 Identities=29% Similarity=0.304 Sum_probs=55.1
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~ 682 (766)
.+++++|+++++++++++++.|+++.|.+++.+.+||+|++++++|+||.+|+.+....
T Consensus 146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 57999999999999999999999999999999999999999999999999999986543
No 145
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.59 E-value=0.00012 Score=66.21 Aligned_cols=54 Identities=31% Similarity=0.315 Sum_probs=50.7
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE 677 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~ 677 (766)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||.+|+.
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 468899999999999999999999999999999999999899999999999986
No 146
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.57 E-value=0.0001 Score=67.74 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=52.8
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 455789999999999999999999999999999999999999999999999999864
No 147
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.57 E-value=0.00013 Score=66.12 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=50.8
Q ss_pred ccccccccccceeEEeCC--ccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMT--TLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~--~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..++.++|.+++.++.++ +++.++++.|.+++.+.+||+|++|+++|+||.+|+.+
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 357889999888999887 68999999999999999999999999999999999874
No 148
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.57 E-value=0.00015 Score=66.84 Aligned_cols=53 Identities=28% Similarity=0.338 Sum_probs=48.5
Q ss_pred ccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHH
Q 004241 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE 677 (766)
Q Consensus 625 ~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~ 677 (766)
.+.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||.+|++
T Consensus 69 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 69 RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 34457888999999999999999999999999999999999999999999986
No 149
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.53 E-value=0.00012 Score=66.93 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=50.8
Q ss_pred ccccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEecCC---CcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~---g~lvGiVt~~dL~~ 678 (766)
...+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 35678889985 78899999999999999999999999999987 79999999999864
No 150
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.52 E-value=0.00017 Score=65.03 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=52.6
Q ss_pred ccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 621 l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
....++.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+.+
T Consensus 55 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 LKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred hcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 3456788999999999999999999999999999999999999999999999999863
No 151
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.51 E-value=0.00016 Score=64.88 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=52.3
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~ 679 (766)
+.+++++|.+++..+.+++++.++++.|.+++...+||+|++++++|+||.+|+.+.
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 456889999899999999999999999999999999999989999999999999764
No 152
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.49 E-value=0.00018 Score=64.47 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=51.8
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..+++++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus 52 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 45788999989999999999999999999999999999999999999999999864
No 153
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.49 E-value=0.00015 Score=65.62 Aligned_cols=56 Identities=32% Similarity=0.324 Sum_probs=51.2
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.+++.++++++++.++++.|.+++...+||+|+ |+++|+|+.+|+.+
T Consensus 58 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 346788999999999999999999999999999999999997 99999999999864
No 154
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.47 E-value=0.0002 Score=65.13 Aligned_cols=57 Identities=32% Similarity=0.395 Sum_probs=52.6
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||.+|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 456788999999999999999999999999999999999998899999999999875
No 155
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.47 E-value=9.3e-05 Score=83.38 Aligned_cols=111 Identities=23% Similarity=0.172 Sum_probs=87.7
Q ss_pred HHhcccccCCHHHHHHHHccCCCcccccHHHHHHHHHHHHHHHHHhhhcCCccceechHhHHHHHHhHHHHHHHHHhhhc
Q 004241 405 LMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQ 484 (766)
Q Consensus 405 ~~~P~~~g~G~~~i~~ll~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~ 484 (766)
.+.|..-|+|...++-.+++-.. ....-.+.++.|-++..++++||.+-|-++|++.++.++|.++.++++..-.+
T Consensus 150 ~~AP~A~gSGIpEIK~ilSGf~~----~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~ 225 (696)
T KOG0475|consen 150 VVAPYACGSGIPEIKTILSGFII----RGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLN 225 (696)
T ss_pred heehhhhcCCCccceeeeccchh----hhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccc
Confidence 45699999999988877776422 12233445789999999999999999999999999999999999998753221
Q ss_pred CCCccccccccccchHHHHHHHHHHHHHHhcCchHHHHHHHHHHhC
Q 004241 485 SNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ 530 (766)
Q Consensus 485 ~~~~~~~~~~~~~~p~~~alvGaaa~lag~~~aPls~~viv~Eltg 530 (766)
.+-..-+....|||..+.+++||+.++++.+|-.-
T Consensus 226 -----------e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~ 260 (696)
T KOG0475|consen 226 -----------EAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVS 260 (696)
T ss_pred -----------hhHHHHHHHHHhhccchhhcCCccceeeeehhhhh
Confidence 23344556678889999999999999999999643
No 156
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.46 E-value=0.00022 Score=63.54 Aligned_cols=56 Identities=25% Similarity=0.333 Sum_probs=51.4
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..+++++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+
T Consensus 51 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 34688999989999999999999999999999999999999999999999999864
No 157
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.43 E-value=0.00026 Score=63.76 Aligned_cols=55 Identities=29% Similarity=0.358 Sum_probs=51.2
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.++.++|.++..++++++++.++++.|.+++...+||+|++++++|+|+..|+.+
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 4799999999999999999999999999999999999998899999999999864
No 158
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.43 E-value=0.00021 Score=64.32 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=50.3
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..++.++|.+++.++++++++.++++.|.+++...+||+| +++++|++|.+|+.+
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 3579999999999999999999999999999999999998 589999999999864
No 159
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.40 E-value=0.00019 Score=64.64 Aligned_cols=55 Identities=29% Similarity=0.395 Sum_probs=51.0
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+|+.+|+..
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 5788999999999999999999999999999999999998899999999999863
No 160
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.40 E-value=0.00031 Score=62.94 Aligned_cols=57 Identities=33% Similarity=0.394 Sum_probs=52.0
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+.+
T Consensus 54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 456789999999999999999999999999999899999999899999999999864
No 161
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00024 Score=65.00 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=52.5
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.+++..+++++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 456788999999999999999999999999999999999999899999999999864
No 162
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.39 E-value=0.00031 Score=62.69 Aligned_cols=55 Identities=25% Similarity=0.351 Sum_probs=50.9
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|++|.+|+.+
T Consensus 54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 4688999999999999999999999999999999999999999999999999863
No 163
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.38 E-value=0.00034 Score=62.22 Aligned_cols=54 Identities=26% Similarity=0.215 Sum_probs=49.9
Q ss_pred ccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 625 ~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
+++++|.+.+..+.+++++.++++.|.+++.+.+||+|++++++|+++.+|+.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 578899888888999999999999999999999999999899999999999864
No 164
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.38 E-value=0.0003 Score=63.74 Aligned_cols=55 Identities=33% Similarity=0.375 Sum_probs=50.0
Q ss_pred cccccccccceeEEeC--CccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLM--TTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~--~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.+++++|.++...+.. ++++.++++.|.+++...+||+|++++++|+||.+|+.+
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 4588999988888877 999999999999999999999999999999999999864
No 165
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.38 E-value=0.00028 Score=64.52 Aligned_cols=57 Identities=39% Similarity=0.530 Sum_probs=52.4
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.+++..+.+++++.++++.|.+.+.+.+||+|++++++|++|.+|+.+
T Consensus 65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 456788999999999999999999999999999999999998899999999999864
No 166
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.38 E-value=0.00028 Score=62.63 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=42.5
Q ss_pred eeEEeCCccHHHHHHHHHHcCCcEEEEecCC-CcEEEEEehhhHHH
Q 004241 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEE 678 (766)
Q Consensus 634 ~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~-g~lvGiVt~~dL~~ 678 (766)
+.++.+++++.++++.|.+++.+.+||+|++ |+++|++|.+|+++
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 7889999999999999999999999999987 99999999999864
No 167
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.38 E-value=0.00028 Score=63.36 Aligned_cols=55 Identities=33% Similarity=0.405 Sum_probs=50.9
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.++.++|.+++.++++++++.++++.|.+++...+||+|++++++|++|.+|+.+
T Consensus 56 ~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 4688999999999999999999999999999999999998899999999999864
No 168
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.37 E-value=0.00027 Score=64.01 Aligned_cols=55 Identities=27% Similarity=0.237 Sum_probs=50.7
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCC--CcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND--NILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~--g~lvGiVt~~dL~~ 678 (766)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 45888999999999999999999999999999999999987 89999999999874
No 169
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.37 E-value=0.00035 Score=62.43 Aligned_cols=56 Identities=38% Similarity=0.407 Sum_probs=49.9
Q ss_pred ccccccccccceeEEeC-CccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLM-TTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~-~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..++.++|.+++..+.+ ++++.++++.|.+.+.+.+||+|++++++|+||.+|+.+
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 45788999887777777 999999999999999999999998899999999999864
No 170
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.35 E-value=0.00029 Score=64.75 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=51.5
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..++.++|.++++++++++++.++++.|.+.+.+.+||+|++|+++|+||.+|+.+
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 45788899999999999999999999999999999999998899999999999874
No 171
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.34 E-value=0.00063 Score=78.08 Aligned_cols=59 Identities=25% Similarity=0.225 Sum_probs=54.2
Q ss_pred ccccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHH
Q 004241 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (766)
Q Consensus 622 ~~~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l 680 (766)
.+.+|+++|++ +++++++++++.+|++.|.+++.+.+||+|++++++|+||.+|+.+..
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 34679999997 788999999999999999999999999999999999999999998753
No 172
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00058 Score=62.48 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=44.7
Q ss_pred CCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 707 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 707 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
+..++++++++.++.+.|.+++.+.+||+|+ +|+++|+++.+|+.+...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-----~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-----NGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEeHHHHHHHHh
Confidence 5678999999999999999999999999997 789999999999997553
No 173
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.32 E-value=0.00039 Score=62.38 Aligned_cols=56 Identities=30% Similarity=0.327 Sum_probs=51.4
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.+++..+++++++.++++.|.+++.+.+||+| +|+++|+||.+|+.+
T Consensus 54 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 45678999999999999999999999999999999999999 789999999999863
No 174
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.32 E-value=0.00029 Score=63.71 Aligned_cols=56 Identities=30% Similarity=0.400 Sum_probs=49.6
Q ss_pred cccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..++.++|.+ ++.++.+++++.++++.|.+++.+.+||+|++++++|+++.+|+.+
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 4578889975 3678999999999999999999999999998899999999999753
No 175
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00024 Score=74.64 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=95.6
Q ss_pred hhccccccccchhhhhhhccccccccccccc--eeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHH
Q 004241 603 EVESSLCIDDWNLEVEELKRRVFVSEVMRTR--YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (766)
Q Consensus 603 ~~~s~~~~~d~~~~~~~~l~~~~V~diM~~~--~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l 680 (766)
..+++-++.+|. ++.+..+-++++++|++. ...-.+...-..+++.+.+...+.+.+++.+++.+|+|+.++..+.
T Consensus 254 ~~PAndYV~~Fv-~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~- 331 (386)
T COG4175 254 LNPANDYVRDFV-RNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA- 331 (386)
T ss_pred cCccHHHHHHHH-hcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc-
Confidence 334444444443 345667778999999952 1222223344567888888888888888888889999999887532
Q ss_pred HHHhhhccccchhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 681 KYAQAKTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 681 ~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
.+.+ .+.++.+|+++.+.+....+.... ++|||+ +++++|++++.++++++.
T Consensus 332 ----------------~~~~------~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde-----~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ----------------ALID------DVLTVDADTPLSEILARIRQAPCP-VAVVDE-----DGRYVGIISRGELLEALA 383 (386)
T ss_pred ----------------cccc------cccccCccchHHHHHHHHhcCCCc-eeEEcC-----CCcEEEEecHHHHHHHHh
Confidence 2233 567899999999999999988776 899998 899999999999999875
Q ss_pred c
Q 004241 761 F 761 (766)
Q Consensus 761 ~ 761 (766)
.
T Consensus 384 ~ 384 (386)
T COG4175 384 R 384 (386)
T ss_pred c
Confidence 4
No 176
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.30 E-value=0.00035 Score=62.83 Aligned_cols=55 Identities=33% Similarity=0.419 Sum_probs=50.8
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.++.++|.+++.++.+++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 3588999999999999999999999999999999999998899999999999864
No 177
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.30 E-value=0.00045 Score=65.13 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=50.7
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..+++++|.+++..+.+++++.++++.|.+++.+.+||+|+ ++++|+||.+|+.+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 45799999999999999999999999999999999999986 89999999999864
No 178
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.29 E-value=0.00067 Score=50.28 Aligned_cols=47 Identities=40% Similarity=0.636 Sum_probs=42.4
Q ss_pred CeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHh
Q 004241 708 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 759 (766)
Q Consensus 708 ~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~ 759 (766)
+.++.+++++.++.+.|.+.+.+.+||+++ +++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-----EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-----CCeEEEEEEHHHHHHhh
Confidence 467899999999999999999999999996 68999999999998754
No 179
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.28 E-value=0.00055 Score=63.84 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=51.7
Q ss_pred ccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 621 l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
+...++.++|.+++..+.+++++.++++.|.+.+.+.+||+|+ ++++|++|.+|+.+
T Consensus 75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 3445889999999999999999999999999999999999998 99999999999864
No 180
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00054 Score=63.38 Aligned_cols=52 Identities=29% Similarity=0.365 Sum_probs=47.5
Q ss_pred ccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 627 SEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 627 ~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.+.|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||.+|+.+
T Consensus 74 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 3567778999999999999999999999999999998899999999999864
No 181
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.26 E-value=0.00052 Score=61.56 Aligned_cols=55 Identities=29% Similarity=0.433 Sum_probs=50.5
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||.+|+.+
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 45789999989999999999999999999999999999997 89999999999864
No 182
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.26 E-value=0.00055 Score=61.30 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=50.1
Q ss_pred ccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 625 ~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
++.++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+
T Consensus 56 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 488899889999999999999999999999999999999999999999999864
No 183
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.26 E-value=0.0003 Score=65.14 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=47.6
Q ss_pred ccccccccccceeEE------eCCccHHHHHHHHHHcCCcEEEEecCC-CcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTV------LMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V------~~~~tl~eal~~m~~~~~~~~pVvd~~-g~lvGiVt~~dL~~ 678 (766)
..+++++|+++...+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+.+
T Consensus 63 ~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 63 ELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred heEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 456889998765443 268899999999999999999999987 89999999999864
No 184
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.26 E-value=0.00031 Score=65.81 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=51.7
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.+++..+.+++++.++++.|.+.+.+.+||+| +|+++|+||.+|+.+
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 44679999999999999999999999999999999999999 899999999999864
No 185
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.25 E-value=0.00053 Score=61.41 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=50.7
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.++.++|.+++..+++++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 5688899889999999999999999999999999999998899999999999863
No 186
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.24 E-value=0.00046 Score=62.01 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=51.9
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecC-CCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN-DNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~-~g~lvGiVt~~dL~~ 678 (766)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +++++|+++.+|+..
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 36889999999999999999999999999999999999998 899999999999864
No 187
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.24 E-value=0.0005 Score=61.72 Aligned_cols=55 Identities=31% Similarity=0.381 Sum_probs=50.8
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..++.++|.++++.+++++++.++++.|.+++.+.+||+|+ |+++|++|.+|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 45788999999999999999999999999999999999997 89999999999864
No 188
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.24 E-value=0.00047 Score=75.15 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=52.8
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~ 679 (766)
..+++++|++++.++.+++++.++++.|.+++...+||+|++++++|+||.+|+.++
T Consensus 262 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 346889999999999999999999999999999999999998999999999999753
No 189
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.24 E-value=0.00055 Score=61.56 Aligned_cols=56 Identities=38% Similarity=0.392 Sum_probs=50.5
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.+++..+.+++++.++++.|.+++.+.+||+|++ +++|+|+.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 3457889999899999999999999999999999999999976 9999999999863
No 190
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.23 E-value=0.00061 Score=60.98 Aligned_cols=55 Identities=27% Similarity=0.342 Sum_probs=50.9
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.++.++|.+++..+.+++++.++++.|.+++.+.+||+|++++++|++|..|+.+
T Consensus 56 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 4678899999999999999999999999999999999998899999999999864
No 191
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00037 Score=62.80 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=50.5
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+.+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 45788999989999999999999999999999999999997 89999999999864
No 192
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.22 E-value=0.00081 Score=49.82 Aligned_cols=47 Identities=34% Similarity=0.323 Sum_probs=42.3
Q ss_pred eeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHH
Q 004241 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (766)
Q Consensus 634 ~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l 680 (766)
+.++.+++++.++.+.|.+++.+.+||+|++++++|+++.+++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46788999999999999999999999999889999999999987653
No 193
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.22 E-value=0.00052 Score=61.66 Aligned_cols=54 Identities=26% Similarity=0.255 Sum_probs=49.9
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE 677 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~ 677 (766)
..++.++|.+++.++.+++++.++++.|.+++...+||+|+ |+++|+||..|+.
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~ 109 (111)
T cd04626 56 EKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDIL 109 (111)
T ss_pred cCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhc
Confidence 34688899999999999999999999999999999999997 8999999999986
No 194
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.21 E-value=0.00096 Score=74.14 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=81.0
Q ss_pred hhccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhc
Q 004241 619 ELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMC 698 (766)
Q Consensus 619 ~~l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm 698 (766)
+..+-++++++|.+.......+.+ .+++. ++.+.++|+|+ |+++.++........ .+..+.+ +
T Consensus 269 ~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~------~~~~~~~-~ 331 (382)
T TIGR03415 269 NPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWA------AEQEVES-L 331 (382)
T ss_pred CcccceeHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhcc------cccchhh-h
Confidence 456778999999553333333322 44433 67888999986 889988865443310 1123555 4
Q ss_pred ccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 699 SADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 699 ~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
.. +..++++|+++.+++..+.+.+.. ++|+| +|+++|+|++.++++++.
T Consensus 332 ~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~------~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 332 EA------APTVINPDTLMRDVLAARHRTGGA-ILLVE------NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred cc------cCcccCCCCcHHHHHHHHhcCCCC-eEEee------CCeEEEEEeHHHHHHHHh
Confidence 44 567899999999999999998877 88988 699999999999998864
No 195
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.00048 Score=62.86 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=51.9
Q ss_pred ccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 621 l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
....++.++|.++...+++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 3456788999999999999999999999999999999999997 89999999999864
No 196
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.21 E-value=0.00058 Score=60.52 Aligned_cols=53 Identities=28% Similarity=0.380 Sum_probs=49.4
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE 677 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~ 677 (766)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|++|.+|+.
T Consensus 51 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 4688899999999999999999999999999999999997 9999999999985
No 197
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.20 E-value=0.00064 Score=61.08 Aligned_cols=56 Identities=29% Similarity=0.368 Sum_probs=50.9
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..++.++|.+++.++.+++++.++++.|.+++...+||+|++|+++|++|.+|+.+
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 34688999999999999999999999999988899999998899999999999863
No 198
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.18 E-value=0.00066 Score=71.78 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=59.8
Q ss_pred hhccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHH
Q 004241 619 ELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683 (766)
Q Consensus 619 ~~l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~ 683 (766)
+...+.++..+|++++.++.+.+++..+.+.|.-++.+-+||+|++.+++|+||++|+++.++..
T Consensus 244 ~~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 244 DKKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred cCCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence 34566788999999999999999999999999999999999999999999999999999988753
No 199
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.17 E-value=0.0007 Score=60.83 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=50.6
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.+++..+++++++.++++.|.+++...+||+|+ ++++|++|.+|+.+
T Consensus 55 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 345788999999999999999999999999999999999985 89999999999864
No 200
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.16 E-value=0.0012 Score=62.34 Aligned_cols=50 Identities=26% Similarity=0.087 Sum_probs=45.4
Q ss_pred CCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhc
Q 004241 707 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 761 (766)
Q Consensus 707 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~ 761 (766)
++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-----~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-----DDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHHHHHHhh
Confidence 4689999999999999999999999999997 7999999999999987643
No 201
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.00062 Score=62.31 Aligned_cols=55 Identities=31% Similarity=0.403 Sum_probs=51.0
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.++.++|.+++..+.+++++.++++.|.+++...+||+|++++++|+++.+|+.+
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 4688999999999999999999999999999999999998899999999999874
No 202
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.13 E-value=0.00068 Score=60.39 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=48.6
Q ss_pred ccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 625 ~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
++.++|.++..++++++++.++++.|.+++.+.+||+| +|+++|++|.+|+.+
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 57788988999999999999999999999999999998 689999999999864
No 203
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.13 E-value=0.00068 Score=74.09 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=52.2
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~ 679 (766)
...+++|+|++++.++.+++++.++++.|.+++.+.+||+| +++++|+||++|+.+.
T Consensus 267 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 267 RQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 34679999999999999999999999999999999999997 6799999999999863
No 204
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.08 E-value=0.0013 Score=57.89 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=43.1
Q ss_pred CCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHH
Q 004241 707 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758 (766)
Q Consensus 707 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~ 758 (766)
++.++++++++.++++.|.+++.+.+||+|+ +|+++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-----DGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHhcC
Confidence 4678999999999999999999999999997 7899999999999764
No 205
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.07 E-value=0.00094 Score=76.78 Aligned_cols=60 Identities=28% Similarity=0.319 Sum_probs=55.6
Q ss_pred ccccccccccc--eeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHH
Q 004241 623 RVFVSEVMRTR--YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (766)
Q Consensus 623 ~~~V~diM~~~--~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~ 682 (766)
+.+|+++|+++ ++++++++++.|+++.|.+++.+.+||+|++++++|+||++|+.+....
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 56799999976 8899999999999999999999999999999999999999999988754
No 206
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.05 E-value=0.0009 Score=60.02 Aligned_cols=54 Identities=30% Similarity=0.297 Sum_probs=47.5
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..+.++| .++.++.+++++.++++.|.+++.+.+||+|++++++|++|.+|+.+
T Consensus 57 ~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 3466666 46788999999999999999999999999999999999999999863
No 207
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.05 E-value=0.001 Score=60.53 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=51.7
Q ss_pred ccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 621 l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
....++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 4456788999999999999999999999999999999999987 89999999999864
No 208
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.0011 Score=61.36 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=50.5
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEec--CCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVD--NDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd--~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.++++++.+++++.++++.|.+.+...+||++ ++++++|+||.+|+.+
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 34578899999999999999999999999999888999984 4689999999999864
No 209
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.01 E-value=0.0012 Score=59.62 Aligned_cols=52 Identities=46% Similarity=0.515 Sum_probs=49.0
Q ss_pred ccccccccceeEEeCCccHHHHHHHHHH-cCCcEEEEecCCC-cEEEEEehhhH
Q 004241 625 FVSEVMRTRYVTVLMTTLLIEALTLMLA-EKQSCAMIVDNDN-ILIGLLTLGDI 676 (766)
Q Consensus 625 ~V~diM~~~~~~V~~~~tl~eal~~m~~-~~~~~~pVvd~~g-~lvGiVt~~dL 676 (766)
++.++|+.++.++.+++++.++.+.|.+ ++.+.+||+|+++ +++|++|.+|+
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 6899999999999999999999999999 7999999999986 99999999986
No 210
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.98 E-value=0.0021 Score=59.52 Aligned_cols=49 Identities=24% Similarity=0.521 Sum_probs=44.6
Q ss_pred CCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 707 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 707 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
++.++++++++.++.+.|.+++.+.+||+|+ +++++|+++.+|+++...
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-----~~~~~Gii~~~dl~~~~~ 51 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-----SGKILGMVTLGNLLSSLS 51 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHH
Confidence 5789999999999999999999999999997 789999999999987543
No 211
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.002 Score=58.13 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=44.5
Q ss_pred CCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 707 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 707 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
++.++++++++.++.+.|.+++.+.+||+|+ +++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-----EGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-----CCcEEEEEeHHHHHHHhh
Confidence 4678999999999999999999999999996 789999999999987653
No 212
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.94 E-value=0.0014 Score=59.66 Aligned_cols=57 Identities=26% Similarity=0.243 Sum_probs=49.3
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCc---EEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQS---CAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~---~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
.+.++.++|.+++..+.+++++.++++.|.+++.. ..+|+|++|+++|+||.+|+.+
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 45679999999999999999999999999887643 4578888999999999999863
No 213
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.90 E-value=0.0015 Score=58.48 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=45.5
Q ss_pred ccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 629 iM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
+|.+++.++++++++.++++.|.+++.+.+||++ +|+++|+||.+|+.+
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 7888999999999999999999999999999995 789999999999864
No 214
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.81 E-value=0.0023 Score=67.71 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=51.8
Q ss_pred hhHhhhcccCCCCccC-CeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHh
Q 004241 692 LLVSEMCSADGETCCV-PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 759 (766)
Q Consensus 692 ~~V~dvm~~~~~~~~~-~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~ 759 (766)
.+++++|++ + +.++++++++.++++.|.+.+.+.+||+|+ +|+++|+|+.+|+.+..
T Consensus 155 ~~v~~im~~------~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-----~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 155 VKVKDLMQT------TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-----NNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhHHHHhCC------CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-----CCCEEEEEEcHHHHHHH
Confidence 568899987 6 889999999999999999999999999997 79999999999998764
No 215
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.78 E-value=0.0028 Score=68.02 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=67.2
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCC
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGE 703 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~ 703 (766)
.++.++|++. .++++++++.++++.|++++.+.+||+|+.|.++|+||.+|+.+.+...-... .....-.++...
T Consensus 133 ~~l~~l~r~~-~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de-~d~~~~~~i~~~--- 207 (292)
T PRK15094 133 FSMDKVLRQA-VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDE-YDEEDDIDFRQL--- 207 (292)
T ss_pred CCHHHHcCCC-cCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccc-cccccccccEEe---
Confidence 3578888764 58999999999999999999999999999999999999999999875421111 000000011111
Q ss_pred CccCCeEeCCCCCHHHHHHHH
Q 004241 704 TCCVPCTATPNMNLLSALILM 724 (766)
Q Consensus 704 ~~~~~~~V~~d~sL~eal~~m 724 (766)
......++..+++.+..+.+
T Consensus 208 -~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 208 -SRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred -CCCeEEEEeccCHHHHHHHh
Confidence 01346778888888877765
No 216
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.75 E-value=0.0018 Score=74.38 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=54.6
Q ss_pred cccccccccc--ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHH
Q 004241 623 RVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (766)
Q Consensus 623 ~~~V~diM~~--~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~ 681 (766)
..+++|+|++ +++++++++++.|+++.|.+++.+.+||+|++++++|+||.+|+.+...
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 4679999998 8999999999999999999999999999999999999999999997643
No 217
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.74 E-value=0.0019 Score=57.59 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=46.7
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
..++.++|.+++.++++++++.++.+.|.+ . ...||+|++++++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 356888998899999999999999999988 3 34789998899999999999864
No 218
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.74 E-value=0.0033 Score=72.03 Aligned_cols=59 Identities=25% Similarity=0.467 Sum_probs=53.4
Q ss_pred chhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 691 KLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 691 ~~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
..+++++|.+ ++.++.+++++.++++.|.+++.+.+||+|+ +++++|+||.+|+.+...
T Consensus 334 ~~~v~~im~~------~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 334 NATVKDLHLP------APVTVHPTETVGDAIEILREYGFDQLPVVTE-----AGKVLGSVTLRELLSALF 392 (454)
T ss_pred cCCHHHhCcC------CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHh
Confidence 3679999988 7899999999999999999999999999997 789999999999988553
No 219
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.73 E-value=0.0035 Score=70.56 Aligned_cols=96 Identities=18% Similarity=0.013 Sum_probs=70.1
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCC
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGE 703 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~ 703 (766)
.+++++|+ ++..+++++++.++++.|++++.+..+|+|+.|..+|+||.+|+.+.+...-..+ . + .-.+.+.+
T Consensus 255 ~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de-~-d-~~~~~i~~--- 327 (408)
T TIGR03520 255 FDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDE-F-D-DEDLIYSK--- 327 (408)
T ss_pred CCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCc-C-C-cCccceEE---
Confidence 35677886 4779999999999999999999999999999999999999999998874321111 0 1 01122221
Q ss_pred CccCCeEeCCCCCHHHHHHHHHH
Q 004241 704 TCCVPCTATPNMNLLSALILMDR 726 (766)
Q Consensus 704 ~~~~~~~V~~d~sL~eal~~m~~ 726 (766)
.......++.++++.++.+.+.-
T Consensus 328 ~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 328 IDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred eCCCeEEEEeccCHHHHHHHhCC
Confidence 01145678889999999888743
No 220
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.72 E-value=0.0027 Score=56.15 Aligned_cols=53 Identities=38% Similarity=0.421 Sum_probs=49.0
Q ss_pred cccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 626 V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
+.++|..+...+.+++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 66788889999999999999999999999999999999999999999999864
No 221
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.002 Score=72.49 Aligned_cols=62 Identities=26% Similarity=0.314 Sum_probs=57.5
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~ 683 (766)
.+.+++++|.++++++.++++-+|+.+.+++++.-.+||||++++++|+||.+|+.+.+.+.
T Consensus 194 ~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 194 PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999888653
No 222
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.65 E-value=0.0038 Score=59.25 Aligned_cols=56 Identities=27% Similarity=0.424 Sum_probs=50.9
Q ss_pred cccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 622 ~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
...++.++|.+++.++++++++.++++.|.+.+...+||+|+ ++++|+++.+|+.+
T Consensus 87 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 356788999999999999999999999999999999999997 89999999999863
No 223
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.58 E-value=0.0038 Score=55.53 Aligned_cols=53 Identities=26% Similarity=0.298 Sum_probs=47.9
Q ss_pred ccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHH
Q 004241 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (766)
Q Consensus 625 ~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~ 678 (766)
++.++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|++|.+|+.+
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 567888889999999999999999999999999999985 79999999999864
No 224
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.55 E-value=0.0032 Score=71.83 Aligned_cols=59 Identities=34% Similarity=0.351 Sum_probs=54.6
Q ss_pred ccccccccc-cceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHH
Q 004241 623 RVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (766)
Q Consensus 623 ~~~V~diM~-~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~ 681 (766)
..+++++|+ ++++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+...
T Consensus 142 ~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 457899999 48999999999999999999999999999999999999999999998754
No 225
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.17 E-value=0.01 Score=66.92 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=53.3
Q ss_pred hhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhc
Q 004241 692 LLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRF 761 (766)
Q Consensus 692 ~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~ 761 (766)
+.+.++++. ++++|++++++.+|.++|.+.+.+.+.|+|+ +++..||||++|+....-.
T Consensus 149 trv~~~~~~------~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-----~~~~~GIvT~~dl~~~v~~ 207 (610)
T COG2905 149 TRVGEVKTL------PAVTVSPQASIQDAARKMKDEGVSSLVVLDD-----SGPLLGIVTRKDLRSRVIA 207 (610)
T ss_pred HHHHHHhcC------CCcccCccCcHHHHHHHHHhcCCCeEEEEcC-----CCCccceeehHHHHHHHHh
Confidence 568888888 8999999999999999999999999999987 8999999999999887643
No 226
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.94 E-value=0.014 Score=64.57 Aligned_cols=58 Identities=26% Similarity=0.270 Sum_probs=52.8
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~ 682 (766)
-.+.+.|.++..++++++++.+++..+.+++.. +||+|++|+++|+||..++.+.+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 302 QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred CchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 357788888889999999999999999999988 9999999999999999999988754
No 227
>PRK11573 hypothetical protein; Provisional
Probab=95.27 E-value=0.038 Score=62.31 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=54.1
Q ss_pred cchhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHh
Q 004241 690 SKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 759 (766)
Q Consensus 690 ~~~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~ 759 (766)
.+.+++|+|+++. +...++.++++.++.+.+.+++..++||.+++ .++++|+|..+|++...
T Consensus 185 ~~~~v~eiMtPr~----~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~----~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 185 EKVTVDDIMVPRN----EIVGIDINDDWKSILRQLTHSPHGRIVLYRDS----LDDAISMLRVREAYRLM 246 (413)
T ss_pred CCCChhhcCCccc----eEEEEECCCCHHHHHHHHHhCCCceEEEEcCC----CCceEEEEEHHHHHHHh
Confidence 4588999999843 67899999999999999999999999999862 47899999999998654
No 228
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.19 E-value=0.11 Score=53.54 Aligned_cols=148 Identities=15% Similarity=0.050 Sum_probs=90.1
Q ss_pred hhhhhhhhhccccccccchhhhhhhccccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhh
Q 004241 596 PYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGD 675 (766)
Q Consensus 596 ~~~~~l~~~~s~~~~~d~~~~~~~~l~~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~d 675 (766)
..-++++-|+++..--|...+.+-.-.-..+..-+...++.|..| +.||+++- +.+.|.| +|+++-+=+..+
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~ 222 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDE 222 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHH
Confidence 334555566766665555444332222233444444456666554 67777643 3577777 799999999988
Q ss_pred HHHHHHHHhh-----hc-----cccchhHhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCc
Q 004241 676 IEEFSKYAQA-----KT-----SRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQ 745 (766)
Q Consensus 676 L~~~l~~~~~-----~~-----~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~ 745 (766)
+++...+.-- .. ......+.+.|...... +-..+.......+++..+...+...+||||+ +|+
T Consensus 223 il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~-----~g~ 295 (309)
T COG1125 223 ILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPA--DGEPLLEGFVDRDALSDFLARGRSVLPVVDE-----DGR 295 (309)
T ss_pred HHhCccHHHHHHHhccccccccccchhhHHHhhcccccc--cCCccccchhhHHHHHHHHhcCCceeEEECC-----CCc
Confidence 8754332110 00 11224455665541101 1122444555667888888899999999998 899
Q ss_pred EEEEEeHHHHHHH
Q 004241 746 LVGLLDRESIILA 758 (766)
Q Consensus 746 lvGIVt~~DIl~~ 758 (766)
++|.||+.|++..
T Consensus 296 ~~G~vt~~~l~~~ 308 (309)
T COG1125 296 PLGTVTRADLLDE 308 (309)
T ss_pred EeeEEEHHHHhhh
Confidence 9999999999864
No 229
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.91 E-value=0.049 Score=61.10 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=51.6
Q ss_pred cccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHH
Q 004241 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (766)
Q Consensus 624 ~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~ 682 (766)
.++.+.+.++..++++++++.+++..+.++... +||+|++|+++|+|+..++.+.+..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 337 QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 357777888889999999999999999987766 9999999999999999999988854
No 230
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=94.24 E-value=0.12 Score=58.78 Aligned_cols=50 Identities=30% Similarity=0.193 Sum_probs=47.0
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHH
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~ 682 (766)
++..|++++++.++++.|++++.+-..|+|+.|...|+||.+|+.+.+..
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence 78899999999999999999999999999999999999999999988753
No 231
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.051 Score=58.98 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=53.3
Q ss_pred ccccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHH
Q 004241 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (766)
Q Consensus 623 ~~~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l 680 (766)
...+.|+|+++.++.+.+.+++++-+++++++...+||||++|+++-++++.|+.+..
T Consensus 170 ~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 170 SLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred cchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 3578999999989999999999999999999999999999999999999999998653
No 232
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=93.42 E-value=0.086 Score=53.31 Aligned_cols=97 Identities=22% Similarity=0.216 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeCCCCCHHHHH
Q 004241 642 LLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSAL 721 (766)
Q Consensus 642 tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~~d~sL~eal 721 (766)
+-+|.++.+++...+.+ +|.| |++-+...+.- .+..|+|+|.++. ...++..++++.+.+
T Consensus 33 nr~eLl~liRdse~n~L--iD~d-------t~~mlEGvm~i-------adl~vrDiMIPRS----QM~~l~~~~~l~~~l 92 (293)
T COG4535 33 NREELLELIRDSEQNEL--IDAD-------TLDMLEGVMDI-------ADLRVRDIMIPRS----QMITLKRNQTLDECL 92 (293)
T ss_pred CHHHHHHHHHHhhhccc--cChh-------HHHHHHHHHHH-------HHhhHhhhcccHH----HheeccccCCHHHHH
Confidence 56777888877654433 2322 33333333321 2477999999843 467899999999999
Q ss_pred HHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhhcc
Q 004241 722 ILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRFC 762 (766)
Q Consensus 722 ~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~~~ 762 (766)
..+.+....+.||+.++ ++.+.||+-.+|+++.++.+
T Consensus 93 ~~iiesaHSRfPVi~ed----kD~v~GIL~AKDLL~~~~~~ 129 (293)
T COG4535 93 DVIIESAHSRFPVISED----KDHVEGILLAKDLLPFMRSD 129 (293)
T ss_pred HHHHHhccccCCcccCC----chhhhhhhhHHHHHHHhcCC
Confidence 99999999999999873 67899999999999987655
No 233
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=90.47 E-value=1 Score=48.84 Aligned_cols=49 Identities=31% Similarity=0.244 Sum_probs=45.4
Q ss_pred ceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHH
Q 004241 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (766)
Q Consensus 633 ~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~ 681 (766)
++..+++.+++.+-+..+++++.+...|||+-|.+.|+||.+|+++.+-
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIV 324 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIV 324 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHh
Confidence 6788999999999999999999999999999999999999999987654
No 234
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=86.95 E-value=1 Score=50.36 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=45.2
Q ss_pred ccccccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHH
Q 004241 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (766)
Q Consensus 625 ~V~diM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~ 681 (766)
++.+ +.++..++++++++.|++..+.+++.. ++|+|+ |+++|+|++.+++..+.
T Consensus 327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 327 EVES-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred chhh-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 4555 667788999999999999988777654 888885 99999999999988764
No 235
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.92 E-value=0.7 Score=47.93 Aligned_cols=79 Identities=23% Similarity=0.222 Sum_probs=53.1
Q ss_pred hhhhhccccccccchhhh---hhhcccccccccccccee----EEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEe
Q 004241 600 NLCEVESSLCIDDWNLEV---EELKRRVFVSEVMRTRYV----TVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLT 672 (766)
Q Consensus 600 ~l~~~~s~~~~~d~~~~~---~~~l~~~~V~diM~~~~~----~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt 672 (766)
++++.+++.++.+|.+.+ ...+...++.+.|.+... .+.....-.+++..+...+...+||+|++|+++|.+|
T Consensus 222 ~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt 301 (309)
T COG1125 222 EILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVT 301 (309)
T ss_pred HHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEE
Confidence 444555555555554433 234455677787766332 2233445556777777888899999999999999999
Q ss_pred hhhHHH
Q 004241 673 LGDIEE 678 (766)
Q Consensus 673 ~~dL~~ 678 (766)
..++..
T Consensus 302 ~~~l~~ 307 (309)
T COG1125 302 RADLLD 307 (309)
T ss_pred HHHHhh
Confidence 999874
No 236
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=85.28 E-value=1 Score=51.98 Aligned_cols=127 Identities=18% Similarity=0.050 Sum_probs=85.2
Q ss_pred hhhcccccccccccc--ceeEEeCCccHH-HHHHHHHHcCCcEEEEecCCCc-EEEEEehhhHHHHHHHHhhhccccchh
Q 004241 618 EELKRRVFVSEVMRT--RYVTVLMTTLLI-EALTLMLAEKQSCAMIVDNDNI-LIGLLTLGDIEEFSKYAQAKTSRSKLL 693 (766)
Q Consensus 618 ~~~l~~~~V~diM~~--~~~~V~~~~tl~-eal~~m~~~~~~~~pVvd~~g~-lvGiVt~~dL~~~l~~~~~~~~~~~~~ 693 (766)
...+....++|+|++ ++..+..+..+. +......+++++.+||.+.+.+ .+|..-.....+.... +. .....+
T Consensus 198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~--~~-~~~~~~ 274 (498)
T KOG2118|consen 198 ALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQV--EV-PLEPLP 274 (498)
T ss_pred hHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcc--cc-cccccc
Confidence 345677889999998 666667777666 5556667889999999986422 2333222222222211 00 123366
Q ss_pred HhhhcccCCCCccCCeEeCCCCCHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEeHHHHHHHhh
Q 004241 694 VSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 760 (766)
Q Consensus 694 V~dvm~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt~~DIl~~~~ 760 (766)
+.+.+.. ....+++++++.+.++.|++.+.+.+.|.+ ...-+++++..|+ +...
T Consensus 275 v~~~~~~------~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~------~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 275 VSESALL------RLPLVPENMPLLDLLNEFQKGKSHMAVVRN------GHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred chhhhcc------ccccCCCcccHHHHHHHHhhhhceeEEEec------CCcceeeEeccch-hhhc
Confidence 7777776 677899999999999999987776555554 4557899999998 5443
No 237
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=77.44 E-value=3.6 Score=44.15 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=44.5
Q ss_pred ccccceeEEeCCccHHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHH
Q 004241 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (766)
Q Consensus 629 iM~~~~~~V~~~~tl~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~ 681 (766)
.+.+++.++.+++++.+.+..+.+.. ..++|+|++++++|++++.++..++.
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHh
Confidence 56667888999999999988887665 46889999999999999999998775
No 238
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=34.74 E-value=4e+02 Score=27.89 Aligned_cols=17 Identities=29% Similarity=0.669 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004241 353 YLLLGVLCGLISLTLSR 369 (766)
Q Consensus 353 ~i~lGv~~Gl~g~~f~~ 369 (766)
...+|+++|+++.....
T Consensus 19 i~~~Givg~LigiYla~ 35 (265)
T TIGR01148 19 IMALGIVGGLVGIYLGN 35 (265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47889999999987765
No 239
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=34.28 E-value=26 Score=23.10 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=19.3
Q ss_pred hhHHHHhhhhhHHHHHhhcchhH
Q 004241 265 RKVSLVAAGSAAGISSGFNAAVA 287 (766)
Q Consensus 265 ~~r~l~~~G~aAGiaa~F~aPi~ 287 (766)
.||+++..+++++.++++..+.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 57899999999999998887653
No 240
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=33.66 E-value=5.3e+02 Score=31.02 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=13.1
Q ss_pred hhhhhHHHHHhhcchhHHHH-HHHHhh
Q 004241 271 AAGSAAGISSGFNAAVAGCF-FAVESV 296 (766)
Q Consensus 271 ~~G~aAGiaa~F~aPi~G~l-Fa~E~~ 296 (766)
..|.+|.+.+.++- ==+++ |++..-
T Consensus 526 ~~~~~a~i~g~~gI-TEpaIPfgv~~p 551 (631)
T PRK09765 526 ETGKSTWLLGLAGI-TEGAIPMAIEDP 551 (631)
T ss_pred HHHHHHHHHHHHhc-CcccHHHHHhcc
Confidence 55666666666642 12444 555543
No 241
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.68 E-value=67 Score=29.77 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004241 351 PLYLLLGVLCGLISLTL 367 (766)
Q Consensus 351 ~~~i~lGv~~Gl~g~~f 367 (766)
+..|++|+++|++|.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 47799999999998776
No 242
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=31.26 E-value=82 Score=26.71 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 004241 87 GNSGVIISSCLVGLLTGIGVVLFNK 111 (766)
Q Consensus 87 ~~~~~~l~~~lvG~l~Gl~a~lf~~ 111 (766)
.+..+++.++++|++.|++.++++.
T Consensus 57 ~~~lil~l~~~~Gl~lgi~~~~~re 81 (82)
T PF13807_consen 57 KRALILALGLFLGLILGIGLAFLRE 81 (82)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667788899999999998887753
No 243
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=29.22 E-value=1.2e+03 Score=28.86 Aligned_cols=38 Identities=32% Similarity=0.535 Sum_probs=26.8
Q ss_pred HHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHhcC
Q 004241 466 IGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQ 516 (766)
Q Consensus 466 iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaa~lag~~~ 516 (766)
+||+.|..+|.++... ....+....+.|-++++||++|
T Consensus 197 ~Gaa~Gv~~Gli~~l~-------------~~~~~~~~~~~af~GLlaG~fk 234 (764)
T TIGR02865 197 AGAAGGVVIGVILGLA-------------NNANLYQIGVFGFAGLLGGIFK 234 (764)
T ss_pred HhHHHHHHHHHHHHhc-------------CccHHHHHHHHHHHHHHHHhhc
Confidence 5788888888887752 2234555666677888888887
No 244
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=28.46 E-value=5.3e+02 Score=27.08 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004241 353 YLLLGVLCGLISLTLSRC 370 (766)
Q Consensus 353 ~i~lGv~~Gl~g~~f~~~ 370 (766)
.+.+|+++|++|....++
T Consensus 12 l~~~Givg~LigiYla~~ 29 (264)
T PRK01030 12 LMALGIVGGLIGIYLAYF 29 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578899999999888653
No 245
>PRK10026 arsenate reductase; Provisional
Probab=28.34 E-value=4.4e+02 Score=25.04 Aligned_cols=107 Identities=10% Similarity=0.008 Sum_probs=61.9
Q ss_pred eEEeCCccHHHHHHHHHHcCCcEEEEec--CCCcEEEEEehhhHHHHHHHHhhhccccchhHhhhcccCCCCccCCeEeC
Q 004241 635 VTVLMTTLLIEALTLMLAEKQSCAMIVD--NDNILIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTAT 712 (766)
Q Consensus 635 ~~V~~~~tl~eal~~m~~~~~~~~pVvd--~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~V~dvm~~~~~~~~~~~~V~ 712 (766)
...+.-.|.+.|++.+.++++..- ++| ++ =.|..+|.+.+... .....+++++.+...+..-.-.
T Consensus 7 Y~~p~Cst~RKA~~wL~~~gi~~~-~~d~~~~-----ppt~~eL~~~l~~~-------g~~~~~lint~~~~yr~L~~~~ 73 (141)
T PRK10026 7 YHNPACGTSRNTLEMIRNSGTEPT-IIHYLET-----PPTRDELVKLIADM-------GISVRALLRKNVEPYEELGLAE 73 (141)
T ss_pred EeCCCCHHHHHHHHHHHHCCCCcE-EEeeeCC-----CcCHHHHHHHHHhC-------CCCHHHHHHcCCchHHHcCCCc
Confidence 344445689999999999886543 222 22 26888888887641 1234566655321111100011
Q ss_pred CCCCHHHHHHHHHHcCC-CEEEEEeccCCCCCCcEEEEEeHHHHHHHh
Q 004241 713 PNMNLLSALILMDRYGV-NQVPVVMEHIPGQRGQLVGLLDRESIILAC 759 (766)
Q Consensus 713 ~d~sL~eal~~m~~~~~-~~lpVVde~~~~~~g~lvGIVt~~DIl~~~ 759 (766)
.+.+..++++.|.++.. =.=||+..+ ++.++|- ..+.+...+
T Consensus 74 ~~ls~~e~l~ll~~~P~LIKRPIi~~~----~~a~i~R-p~e~v~~~l 116 (141)
T PRK10026 74 DKFTDDQLIDFMLQHPILINRPIVVTP----LGTRLCR-PSEVVLEIL 116 (141)
T ss_pred cCCCHHHHHHHHHhCccceeCcEEEcC----CCeEEEC-CHHHHHHHh
Confidence 35788999999998864 122555421 5777776 555555544
No 246
>PRK10490 sensor protein KdpD; Provisional
Probab=25.52 E-value=2e+02 Score=36.12 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004241 316 VILSAVIASVVSEVGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSR 369 (766)
Q Consensus 316 ~~~aa~~a~~v~~~~~g~~~~f~~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~ 369 (766)
++++|+++.+.+.++|= .|.|.+.-++..++..+..++++|++.|.++.-..+
T Consensus 448 ai~aavls~l~~nfFF~-~P~~Tf~v~~~~~~~t~~v~l~va~v~~~l~~r~r~ 500 (895)
T PRK10490 448 SVVATVINVASFDLFFV-APRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRY 500 (895)
T ss_pred HHHHHHHHHHHHHheeC-CCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777665442 355555433333455566777788877766654443
No 247
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=24.44 E-value=2e+02 Score=34.58 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCcEEEEEehhhHHHHHHHHh-hhccc-cc-----hhHhhhcccCCCCccCCeEeCCCC
Q 004241 643 LIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ-AKTSR-SK-----LLVSEMCSADGETCCVPCTATPNM 715 (766)
Q Consensus 643 l~eal~~m~~~~~~~~pVvd~~g~lvGiVt~~dL~~~l~~~~-~~~~~-~~-----~~V~dvm~~~~~~~~~~~~V~~d~ 715 (766)
+++..+.+...+ ..+.+.|++|.++.+....++.+...... ..+.. .+ .-+...... ..+..|....
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~-----~~pv~v~g~E 134 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAIS-----GQPVKTMGDQ 134 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhc-----CCceEEecHH
Confidence 444444554444 68889999999999999888776654311 00000 00 111111111 1466676665
Q ss_pred CHHHHHHHHHHcCCCEEEEEeccCCCCCCcEEEEEe
Q 004241 716 NLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLD 751 (766)
Q Consensus 716 sL~eal~~m~~~~~~~lpVVde~~~~~~g~lvGIVt 751 (766)
-..+. +....+...||.|. +|+++|+++
T Consensus 135 H~~~~---~~~~~c~aaPI~d~-----~G~liGvl~ 162 (638)
T PRK11388 135 HFKQA---LHNWAFCATPVFDS-----KGRLTGTIA 162 (638)
T ss_pred HHHHh---ccCceEEeeEEEcC-----CCCEEEEEE
Confidence 54443 34456678999997 799999996
No 248
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=23.26 E-value=2.8e+02 Score=28.13 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=40.7
Q ss_pred CcchhccCCCccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004241 66 PENERNRKEQPMIIGIDGHEVGNSGVIISSCLVGLLTGIGVVLFNKGVHEIRDF 119 (766)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lvG~l~Gl~a~lf~~~i~~~~~~ 119 (766)
+|+....+++++.+-+=+-...+..+++.-++|+++.=++..+|...|-..+..
T Consensus 105 ~ent~k~~~~~~kk~~CEen~~K~amLIClIIIAVLfLICT~LfLSTVVLANKV 158 (227)
T PF05399_consen 105 TENTSKSQSEIFKKEICEENNNKMAMLICLIIIAVLFLICTLLFLSTVVLANKV 158 (227)
T ss_pred cCcCCCCcccccchhhhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554555666666656656688889999999999999999999888766554
No 249
>PF13303 PTS_EIIC_2: Phosphotransferase system, EIIC
Probab=22.24 E-value=9.8e+02 Score=26.20 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccCcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHH
Q 004241 316 VILSAVIASVVSEVGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVM 395 (766)
Q Consensus 316 ~~~aa~~a~~v~~~~~g~~~~f~~~~~~~~~~~el~~~i~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (766)
+++++.+|+.+.+++.+. ..++. +..=++.++++|++|.+..-....+..+.-+..+..- -..|.+
T Consensus 96 ~~laa~ia~~~~k~i~~~------~~ldi-----il~P~v~~~~~g~ig~~~~P~v~~i~~~IG~~I~~~t---~lqP~l 161 (327)
T PF13303_consen 96 AMLAAAIAVLLGKLIGKK------TSLDI-----ILLPIVTILIGGLIGLLTLPYVSPITTWIGNVINSFT---TLQPLL 161 (327)
T ss_pred HHHHHHHHHHHHHHHccC------CCeEE-----EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCcHH
Confidence 467788888877765311 12221 1222455566666666655544444444443332211 123555
Q ss_pred HHHHHHHH
Q 004241 396 GGLAVGLI 403 (766)
Q Consensus 396 ggllvg~i 403 (766)
.+.+++.+
T Consensus 162 Mgiliav~ 169 (327)
T PF13303_consen 162 MGILIAVV 169 (327)
T ss_pred HHHHHHHH
Confidence 55555543
No 250
>PRK01844 hypothetical protein; Provisional
Probab=21.58 E-value=1.8e+02 Score=24.24 Aligned_cols=18 Identities=11% Similarity=0.061 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004241 351 PLYLLLGVLCGLISLTLS 368 (766)
Q Consensus 351 ~~~i~lGv~~Gl~g~~f~ 368 (766)
+..++++++.|+++.+|.
T Consensus 7 I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 7 ILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445667778888777775
Done!