RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 004241
(766 letters)
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 179 bits (455), Expect = 5e-50
Identities = 95/460 (20%), Positives = 179/460 (38%), Gaps = 59/460 (12%)
Query: 91 VIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPAC 150
++ + +VG L G+ V F+KGV +++ + + ++ P + L A
Sbjct: 19 ILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNY------PLLLTVAFLCSAV 72
Query: 151 GGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTI 210
L + +YA P+A +
Sbjct: 73 LAMFGYFLVR-KYA-----------------------PEAGGSGIPEIEGALEDQRPVRW 108
Query: 211 YYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRRPRRKVSLV 270
+ +K TLG G LG EGP+V+IG +I + V ++F + +
Sbjct: 109 WR-------VLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTL 161
Query: 271 -AAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEV 329
A G+AAG+++ FNA +AG F +E + + V + ++++++ +
Sbjct: 162 LATGAAAGLAAAFNAPLAGILFIIEEMRP------QFRYTLISIKAVFIGVIMSTIMYRI 215
Query: 330 GLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPK 389
V + L LYL+LG++ G+ ++ M ++ + N
Sbjct: 216 FNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKW 275
Query: 390 AVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSL 449
+ G GL+ + P GF + I + ML+ + A+++ T L
Sbjct: 276 VLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNF-----SMGMLVFIFVARVITTLL 330
Query: 450 CRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAA 509
C +SG GG +AP L +G G A+G Q + + + GM A
Sbjct: 331 CFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHL----------EAGTFAIAGMGA 380
Query: 510 TLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFT 549
LA + PLT ++L+ E+T +Y+++LP++ ++
Sbjct: 381 LLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 420
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 59.9 bits (144), Expect = 2e-11
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V ++M T+L T L +A LM A IVD + L+G+++ D+ + +
Sbjct: 4 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 63
Query: 686 KTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQ 745
++++ L E + V P L + I M ++ + +PVV +
Sbjct: 64 RSAQGDSLAFETPLFEVMHTDVTS-VAPQAGLKESAIYMQKHKIGCLPVVAK------DV 116
Query: 746 LVGLLDRESII 756
LVG++ +
Sbjct: 117 LVGIITDSDFV 127
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 59.4 bits (143), Expect = 4e-11
Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 8/138 (5%)
Query: 620 LKRRVF-VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678
LK + ++ + + + MTT +I+ + ++ + S I+D + LI + D+
Sbjct: 4 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV-- 61
Query: 679 FSKYAQAKTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEH 738
+ L V E + T T N L + + + + V++ VV +
Sbjct: 62 LGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV 121
Query: 739 IPGQRGQLVGLLDRESII 756
G+LVG+L I+
Sbjct: 122 -----GRLVGVLTLSDIL 134
Score = 40.5 bits (94), Expect = 1e-04
Identities = 13/81 (16%), Positives = 27/81 (33%)
Query: 599 INLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCA 658
+V + +N + + T L + + +
Sbjct: 56 YEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRF 115
Query: 659 MIVDNDNILIGLLTLGDIEEF 679
+VD+ L+G+LTL DI ++
Sbjct: 116 FVVDDVGRLVGVLTLSDILKY 136
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 54.8 bits (131), Expect = 1e-09
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 15/135 (11%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
+ M + + V +T + EA LM+ +++++D ++G T DI
Sbjct: 7 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL 66
Query: 686 KTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQ 745
+ TA N L L M + + + + E G+
Sbjct: 67 PY---------DIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEE------GK 111
Query: 746 LVGLLDRESIILACR 760
+VG+ ++ A R
Sbjct: 112 IVGIFTLSDLLEASR 126
Score = 30.1 bits (67), Expect = 0.36
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
V +M +T + T L E L M + +I + ++G+ TL D+
Sbjct: 71 PVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGK-IVGIFTLSDL 121
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 54.1 bits (129), Expect = 2e-09
Identities = 19/131 (14%), Positives = 47/131 (35%), Gaps = 13/131 (9%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V ++M + + TV T + +A+ +M ++ D++ +GLL+ I +
Sbjct: 5 VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK 64
Query: 686 KTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQ 745
K + + ++ + G+ + VV + G+
Sbjct: 65 KP--------DEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDP-----GR 111
Query: 746 LVGLLDRESII 756
+VG++ +
Sbjct: 112 VVGIVTLTDLS 122
Score = 35.6 bits (81), Expect = 0.006
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679
MR V + + + +VD+ ++G++TL D+ +
Sbjct: 75 MRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 124
>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga
maritima [TaxId: 2336]}
Length = 145
Score = 54.2 bits (129), Expect = 3e-09
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V +++ + V T + E + +L + + + V DN L+G++ + + + S +
Sbjct: 6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFF 65
Query: 686 KTSRSKLLVSEMCSADGETCCV-----PCTATPNMNLLSALILMDRYGVNQVPVVMEHIP 740
+ L+ P + L AL LM + ++PVV E
Sbjct: 66 GFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEK-- 123
Query: 741 GQRGQLVGLLDRESIILA 758
G++VG L+ I+LA
Sbjct: 124 ---GEIVGDLNSLEILLA 138
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 120
Score = 52.2 bits (124), Expect = 9e-09
Identities = 18/133 (13%), Positives = 43/133 (32%), Gaps = 16/133 (12%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V +VM T T+ +T L + L + + +++V +
Sbjct: 2 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVG----------IVTTWDV 51
Query: 686 KTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQ 745
+ ++ T +P + A M + V ++ V + +
Sbjct: 52 LEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED------DE 105
Query: 746 LVGLLDRESIILA 758
++G++ I+ A
Sbjct: 106 IIGVISATDILRA 118
Score = 29.4 bits (65), Expect = 0.54
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 608 LCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNIL 667
+ + V V EVM VT+ + EA M+ ++ ++D +
Sbjct: 48 TWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDE-I 106
Query: 668 IGLLTLGDI 676
IG+++ DI
Sbjct: 107 IGVISATDI 115
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 179
Score = 53.1 bits (126), Expect = 1e-08
Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 13/144 (9%)
Query: 626 VSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIG-----------LLT 672
+V+ R + +T + +L+L+ A + D++ +
Sbjct: 22 SYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY 81
Query: 673 LGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQV 732
F + L + E+ G P +L+ A + M + ++
Sbjct: 82 YYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRI 141
Query: 733 PVVMEHIPGQRGQLVGLLDRESII 756
P++ +V +L + I+
Sbjct: 142 PLIDVDGETGSEMIVSVLTQYRIL 165
Score = 40.0 bits (92), Expect = 4e-04
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 609 CIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---- 664
+ + L+ + + V L++A M + ++D D
Sbjct: 92 IAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG 151
Query: 665 -NILIGLLTLGDIEEF 679
+++ +LT I +F
Sbjct: 152 SEMIVSVLTQYRILKF 167
>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 159
Score = 52.5 bits (125), Expect = 1e-08
Identities = 20/144 (13%), Positives = 54/144 (37%), Gaps = 13/144 (9%)
Query: 622 RRVFVSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDN-ILIGLLTLGDI-- 676
+ +++ ++ V + + +A ++ A + D+ +G+LT+ D
Sbjct: 11 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFIN 70
Query: 677 ----EEFSKYAQAKTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQV 732
S Q + + ++ +PN +L A+ + R ++++
Sbjct: 71 ILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRL 130
Query: 733 PVVMEHIPGQRGQLVGLLDRESII 756
PV+ + G + +L + I+
Sbjct: 131 PVID----PESGNTLYILTHKRIL 150
Score = 46.7 bits (110), Expect = 1e-06
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDN-ILIGLLTLGDIEEF 679
+ V + L +A++ ++ K ++D ++ + +LT I +F
Sbjct: 97 VYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 152
>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398
{Nitrosomonas europaea [TaxId: 915]}
Length = 127
Score = 51.7 bits (123), Expect = 1e-08
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 18/134 (13%)
Query: 626 VSEVMRTRY---VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682
V +++ + V + + A+ M A+ ++V D L+G+LT D S
Sbjct: 4 VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGA-LLVMKDEKLVGILTERDFSRKSYL 62
Query: 683 AQAKTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQ 742
+ N + L+ V +PV+ +
Sbjct: 63 LDKP--------VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD----- 109
Query: 743 RGQLVGLLDRESII 756
G+++GLL ++
Sbjct: 110 -GKVIGLLSIGDLV 122
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 51.4 bits (122), Expect = 2e-08
Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 14/131 (10%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
++M V L A M I +D+ L G+LT DI A
Sbjct: 3 ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL 62
Query: 686 KTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQ 745
+A N ++ L +M+ + V +VPV+ E +
Sbjct: 63 D--------PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE------HR 108
Query: 746 LVGLLDRESII 756
LVG++ I
Sbjct: 109 LVGIVTEADIA 119
>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem
{Thermotoga maritima [TaxId: 2336]}
Length = 121
Score = 50.3 bits (119), Expect = 4e-08
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 20/131 (15%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V + + + V + + E L M + + ++ D + G++
Sbjct: 3 VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNK------------ 50
Query: 686 KTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQ 745
L + S + N+ AL+L + +PVV E +
Sbjct: 51 ---EDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEE-----MR 102
Query: 746 LVGLLDRESII 756
L G + +
Sbjct: 103 LKGAVSLHDFL 113
Score = 37.2 bits (85), Expect = 0.001
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678
+ V + AL L L ++ +VD + L G ++L D E
Sbjct: 66 VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLE 114
>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 127
Score = 49.9 bits (118), Expect = 6e-08
Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 16/135 (11%)
Query: 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681
V E M+T+ ++V L + +M + ++VD + + + ++ K
Sbjct: 2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGK 61
Query: 682 YAQAKTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPG 741
+T + + + + + ++ A M ++ + +PVV +
Sbjct: 62 GKSLETKAEEFMTASLITIREDSPITGALAL-----------MRQFNIRHLPVVDDK--- 107
Query: 742 QRGQLVGLLDRESII 756
G L G++ I
Sbjct: 108 --GNLKGIISIRDIT 120
Score = 34.1 bits (77), Expect = 0.018
Identities = 15/81 (18%), Positives = 26/81 (32%)
Query: 596 PYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQ 655
V D + E M +T+ + + AL LM
Sbjct: 39 IVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNI 98
Query: 656 SCAMIVDNDNILIGLLTLGDI 676
+VD+ L G++++ DI
Sbjct: 99 RHLPVVDDKGNLKGIISIRDI 119
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 50.0 bits (118), Expect = 1e-07
Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 26/156 (16%)
Query: 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681
+ V + + V T L AL +L +VD++ L+G++ D+ S+
Sbjct: 2 KGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSE 61
Query: 682 YAQAKTSRSKLLVSEMCSADGETC---------------------CVPCTATPNMNLLSA 720
+ S SE ATP+M +
Sbjct: 62 IVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEV 121
Query: 721 LILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESII 756
+ M +Y + Q+PV+ G L+GL+ ++
Sbjct: 122 ALKMAKYSIEQLPVIRGE-----GDLIGLIRDFDLL 152
Score = 39.6 bits (91), Expect = 3e-04
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 2/124 (1%)
Query: 553 MRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDD 612
+ + + V + T R ++ E A + E
Sbjct: 30 LLLSNSMA--LPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTL 87
Query: 613 WNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLT 672
+ E V+E+M + + E M ++ + LIGL+
Sbjct: 88 LFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIR 147
Query: 673 LGDI 676
D+
Sbjct: 148 DFDL 151
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate
dehydrogenase CBS domains {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 120
Score = 48.6 bits (115), Expect = 1e-07
Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 18/130 (13%)
Query: 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAK 686
T V + + + I D + L+G+++ DI+ K
Sbjct: 2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDID------FLK 55
Query: 687 TSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQL 746
+ E+ A + L A ++ R ++P+V E+ +L
Sbjct: 56 EEEHDRFLEEIM----TKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-----DEL 106
Query: 747 VGLLDRESII 756
V ++ R +
Sbjct: 107 VAIIARTDLK 116
Score = 42.0 bits (98), Expect = 3e-05
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 613 WNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLT 672
L+ EE R + R V L EA ++ K+ IV+ ++ L+ ++
Sbjct: 52 DFLKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIA 111
Query: 673 LGDIE 677
D++
Sbjct: 112 RTDLK 116
Score = 31.6 bits (71), Expect = 0.11
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 708 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758
P +P + R+G +P+ G +LVG++ I
Sbjct: 6 PVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMG--SRLVGIISSRDIDFL 54
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
CBS tandem {Marbled electric ray (Torpedo marmorata)
[TaxId: 7788]}
Length = 160
Score = 49.3 bits (116), Expect = 2e-07
Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 24/156 (15%)
Query: 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNI-------------- 666
K + V ++M ++ T+ + L ++ K VD +
Sbjct: 8 KYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEG 67
Query: 667 LIGLLTLGDIEEFSKYAQAKTSRSKLLVSEMCSADGETCCV----PCTATPNMNLLSALI 722
L+ + + + E C P +L
Sbjct: 68 LLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHT 127
Query: 723 LMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 758
L G+++ V G+LVG++ I A
Sbjct: 128 LFSLLGLDRAYVTSM------GKLVGVVALAEIQAA 157
Score = 37.7 bits (86), Expect = 0.002
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 1/89 (1%)
Query: 590 LLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTL 649
L Y E +L + E+ F + + ++ T L + TL
Sbjct: 69 LQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTL 128
Query: 650 MLAEKQSCAMIVDNDNILIGLLTLGDIEE 678
A + L+G++ L +I+
Sbjct: 129 FSLLGLDRAYVTSMGK-LVGVVALAEIQA 156
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 46.0 bits (108), Expect = 1e-06
Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 20/131 (15%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V +M VT+ + AL L K +V+ +
Sbjct: 3 VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGK---------------LVGI 47
Query: 686 KTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQ 745
+ + L+ + N L A LM Y +V VV G+
Sbjct: 48 ISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-----GK 102
Query: 746 LVGLLDRESII 756
VG+L II
Sbjct: 103 PVGILTVGDII 113
Score = 38.7 bits (89), Expect = 3e-04
Identities = 17/88 (19%), Positives = 35/88 (39%)
Query: 589 DLLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALT 648
+L + + + + E L + ++ +++ V L +A
Sbjct: 25 ELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAK 84
Query: 649 LMLAEKQSCAMIVDNDNILIGLLTLGDI 676
LML ++VD+ +G+LT+GDI
Sbjct: 85 LMLEYDYRRVVVVDSKGKPVGILTVGDI 112
>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus
subtilis [TaxId: 1423]}
Length = 132
Score = 45.8 bits (107), Expect = 1e-06
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 13/133 (9%)
Query: 626 VSEVM--RTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683
V + M + V + L AL ++ + ++D L GL+ I +
Sbjct: 4 VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI----MNS 59
Query: 684 QAKTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQR 743
R + + + + N ++ ++ G V V +
Sbjct: 60 IFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDE----- 112
Query: 744 GQLVGLLDRESII 756
G+ R ++
Sbjct: 113 QVFEGIFTRRVVL 125
Score = 31.5 bits (70), Expect = 0.15
Identities = 4/35 (11%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 649 LMLAEKQSCAMIVDNDNILIGLLTLGDI-EEFSKY 682
+ + +++ + G+ T + +E +K+
Sbjct: 97 FGMVINNGFVCVENDEQVFEGIFTRRVVLKELNKH 131
>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 131
Score = 45.3 bits (106), Expect = 2e-06
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 18/135 (13%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVD--NDNILIGLLTLGDIEEFSKYA 683
SE+++ V++ T + E T + + A++ N + +++ DI
Sbjct: 3 TSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR 62
Query: 684 QAKTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQR 743
++ P T + A M R+ + V VV ++
Sbjct: 63 L-----------DLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKN----- 106
Query: 744 GQLVGLLDRESIILA 758
G+LVG+L +
Sbjct: 107 GELVGVLSIRDLCFE 121
>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase
subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 44.8 bits (105), Expect = 5e-06
Identities = 12/127 (9%), Positives = 37/127 (29%), Gaps = 4/127 (3%)
Query: 553 MRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDD 612
++ V T I+ + +V +
Sbjct: 17 GTYANI----AMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKT 72
Query: 613 WNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLT 672
+N + + + + + L + ++ + ++VD +++ G+++
Sbjct: 73 YNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVS 132
Query: 673 LGDIEEF 679
L DI +
Sbjct: 133 LSDILQA 139
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE
{Enterococcus faecalis [TaxId: 1351]}
Length = 127
Score = 43.6 bits (102), Expect = 8e-06
Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 25/133 (18%)
Query: 629 VMRTRYVTVLMTTLLIEALTLM-----LAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA 683
+M T +V+++ + A+ ++ +AE +VD +N L+G+++L D+
Sbjct: 6 IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDDDT 65
Query: 684 QAKTSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQR 743
L++++ + + + + Y VPV
Sbjct: 66 ---------LIADILNER------VISVHVGDDQEDVAQTIRDYDFLAVPVTDYD----- 105
Query: 744 GQLVGLLDRESII 756
L+G++ + II
Sbjct: 106 DHLLGIVTVDDII 118
Score = 39.8 bits (92), Expect = 2e-04
Identities = 9/54 (16%), Positives = 25/54 (46%)
Query: 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+++++ R ++V + + + + D D+ L+G++T+ DI
Sbjct: 64 DTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDI 117
>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 135
Score = 41.9 bits (97), Expect = 4e-05
Identities = 14/138 (10%), Positives = 36/138 (26%), Gaps = 16/138 (11%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
+ +M + L A + ++ + + S +
Sbjct: 3 IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDS 62
Query: 686 KT-----SRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIP 740
+ S + + + + T +N +M +PVV +
Sbjct: 63 CSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAIN------IMVTRNFGSLPVVDIN-- 114
Query: 741 GQRGQLVGLLDRESIILA 758
+ VG++ +L
Sbjct: 115 ---DKPVGIVTEREFLLL 129
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 42.6 bits (99), Expect = 4e-05
Identities = 8/80 (10%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 600 NLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAM 659
+ + + + ++ TV T + + + +
Sbjct: 76 GVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIF-RKLGLRQC 134
Query: 660 IVDNDNILIGLLTLGDIEEF 679
+V ++ L+G++T D+ +
Sbjct: 135 LVTHNGRLLGIITKKDVLKH 154
>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus
thermophilus [TaxId: 274]}
Length = 144
Score = 41.7 bits (97), Expect = 5e-05
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 15/128 (11%)
Query: 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTS 688
+M YV V + E L + I + G + +
Sbjct: 6 LMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPRT 65
Query: 689 RSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVG 748
R +++ + + LM Y +PVV E G+LVG
Sbjct: 66 RVAEIMNPKV----------VYVRTDTDQEEVARLMADYDFTVLPVVDEE-----GRLVG 110
Query: 749 LLDRESII 756
++ + ++
Sbjct: 111 IVTVDDVL 118
Score = 35.6 bits (81), Expect = 0.008
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 628 EVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
E+M + V V T E LM + +VD + L+G++T+ D+
Sbjct: 69 EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDV 117
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 141
Score = 41.5 bits (96), Expect = 6e-05
Identities = 21/136 (15%), Positives = 51/136 (37%), Gaps = 14/136 (10%)
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA 685
V M T+ T+ L +A+ LML ++D+DN ++G++T+ + + A
Sbjct: 4 VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVD 63
Query: 686 K---TSRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQ 742
K +V ++ + T + M + + ++ +
Sbjct: 64 KLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAA------EMIVKRIGSLLILNKD---- 113
Query: 743 RGQLVGLLDRESIILA 758
+ G++ +++A
Sbjct: 114 -NTIRGIITERDLLIA 128
>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate
dehydrogenase CBS domains {Streptococcus pyogenes
[TaxId: 1314]}
Length = 126
Score = 40.3 bits (93), Expect = 1e-04
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 20/129 (15%)
Query: 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN--DNILIGLLTLGDIEEFSKYAQAKT 687
+ + + EA LM + S IV+ + L+G++T D+ S Y
Sbjct: 3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY----- 57
Query: 688 SRSKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLV 747
++ T TA +L +A ++ + + ++P+V G+L
Sbjct: 58 --------NAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNS-----GRLS 104
Query: 748 GLLDRESII 756
GL+ + I
Sbjct: 105 GLITIKDIE 113
Score = 37.2 bits (85), Expect = 0.002
Identities = 17/77 (22%), Positives = 31/77 (40%)
Query: 609 CIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILI 668
I + ++ + VT + T L A ++ + +VDN L
Sbjct: 45 IITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLS 104
Query: 669 GLLTLGDIEEFSKYAQA 685
GL+T+ DIE+ ++ A
Sbjct: 105 GLITIKDIEKVIEFPHA 121
>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 153
Score = 39.9 bits (92), Expect = 2e-04
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 7/127 (5%)
Query: 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSR 689
+ T M T + + + ++ + S IV+++ L+ + D+ S
Sbjct: 10 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDV--MHLIQDGDYSN 67
Query: 690 SKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGL 749
L V E T L + V+++ VV E+ +L G+
Sbjct: 68 LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDEN-----LKLEGI 122
Query: 750 LDRESII 756
L I+
Sbjct: 123 LSLADIL 129
Score = 39.2 bits (90), Expect = 5e-04
Identities = 16/125 (12%), Positives = 33/125 (26%)
Query: 563 VAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEELKR 622
T ++ + +V + D++ +
Sbjct: 15 ATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGE 74
Query: 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682
+ T T L + + +VD + L G+L+L DI + Y
Sbjct: 75 ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY 134
Query: 683 AQAKT 687
+ T
Sbjct: 135 DKTTT 139
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 31.7 bits (71), Expect = 0.25
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678
++ + EV L + + A ++ ++ +G + L D+EE
Sbjct: 134 SIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEE 191
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId:
1423]}
Length = 399
Score = 31.3 bits (70), Expect = 0.41
Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 255 VGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTS 314
N+ D ++ S + G + ++ + + S
Sbjct: 321 QNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASA--ANGLSSSVGWTPSLHGS 378
Query: 315 MVILSAVIASVVSEVGLG 332
+ + V ++V+++ G G
Sbjct: 379 IDASANVKSNVINQAGAG 396
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
subunit {Common earthworm (Lumbricus terrestris)
[TaxId: 6398]}
Length = 41
Score = 27.5 bits (61), Expect = 0.67
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 15 QWHCCSSSSRVIPSSYQCN 33
+ C + I + C+
Sbjct: 7 EHQCGGDDPQCISKLFVCD 25
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia
coli [TaxId: 562]}
Length = 143
Score = 29.6 bits (66), Expect = 0.81
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 8/111 (7%)
Query: 568 NTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEEL--KRRVF 625
N + R E+ T DL A+ + + + D + + K + F
Sbjct: 30 NEFKGRASELQRMET------DLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAF 83
Query: 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDI 676
+ R I+ +A Q ++VD + + + DI
Sbjct: 84 EQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDI 134
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 42
Score = 26.4 bits (58), Expect = 1.4
Identities = 5/25 (20%), Positives = 7/25 (28%), Gaps = 1/25 (4%)
Query: 15 QWHCCSSSSRVIPSSYQCNKSEPSC 39
+ C I C+ E C
Sbjct: 7 ESECRGDVPECIHDLLFCD-GEKDC 30
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 26.3 bits (58), Expect = 1.5
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 15 QWHCCSSSSRVIPSSYQCN 33
+ C +R IP ++C+
Sbjct: 9 DFSCGGRVNRCIPQFWRCD 27
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 26.3 bits (58), Expect = 1.6
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 15 QWHCCSSSSRVIPSSYQCN 33
+ C + S++ IP S++C+
Sbjct: 5 EISCGAHSTQCIPVSWRCD 23
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris)
[TaxId: 6398]}
Length = 41
Score = 26.0 bits (57), Expect = 1.9
Identities = 4/25 (16%), Positives = 7/25 (28%), Gaps = 1/25 (4%)
Query: 15 QWHCCSSSSRVIPSSYQCNKSEPSC 39
+ C + I C+ C
Sbjct: 6 TFQCGGNEQECISDLLVCD-GHKDC 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.407
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,744,130
Number of extensions: 126603
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 62
Length of query: 766
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 674
Effective length of database: 1,144,436
Effective search space: 771349864
Effective search space used: 771349864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.5 bits)