BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004242
(766 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/658 (39%), Positives = 375/658 (56%), Gaps = 50/658 (7%)
Query: 117 TTYSPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEE 176
TT S FLG + + + + +++VGV+DTGIWPE +F D G P P +WKG CE
Sbjct: 1 TTRSWDFLGFP--LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 177 GTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVAN 236
F CN K+IGAR++ +GR D PRD GHGTHTASTAAG +V+
Sbjct: 59 SNNF---RCNRKIIGARSYH------IGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQ 109
Query: 237 ANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVAX-XXXXXXXXXXXXX 295
ANL+GL G A G +RIAAYK CW+ GCS +DILAA D A+A
Sbjct: 110 ANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANP 169
Query: 296 RPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVK 355
R Y+ D +AI SF A + G+ S SAGN GP+ T + +PW+++VAAS DR F V+
Sbjct: 170 RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQ 229
Query: 356 LGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSG-----AEYCINGSLNRKLVKGKIVICQ 410
+GNG SF+G S+ + ++ PLV G+ +G + +C + S+N L+KGKIV+C+
Sbjct: 230 IGNGQSFQGVSINTFD-NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCE 288
Query: 411 RGLNSRTGKGEQVK-LAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNS 469
G E K L G AG+L+ ++ ++ AD++ LP++ L + A +Y+ S
Sbjct: 289 ASF----GPHEFFKSLDGAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYS 340
Query: 470 TKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPS 529
+ P A+I T+ APV+ SFSSRGP+ DVIKPD++ PGV ILAAWP+
Sbjct: 341 IRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG 400
Query: 530 MLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSP 589
++ R LFNIISGTSMSCPH++G+A +K+ + WS AAIKSALMTTA +N R +P
Sbjct: 401 GIR---RNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNP 457
Query: 590 IADVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFA 649
A+ FA+GSGHV+P A PGL+YD DY+ +LC Y + +
Sbjct: 458 QAE------------FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRIT 505
Query: 650 GGNFTCPNPSAFHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNG 709
G C + + LNYPSF ++ + + + + R++T+V TY + P G
Sbjct: 506 GDYSACTSGNTGRVWDLNYPSFGLSVSPS-QTFNQYFNRTLTSVAPQASTYRAMISAPQG 564
Query: 710 VLVTITPPILSFQKIGEILSYKVTFVSLRGASNESF---GSLTWVSGKYAVKSPIAVT 764
+ +++ P +LSF +G+ S+ +T +RG S + F SL W G + V+SPI +T
Sbjct: 565 LTISVNPNVLSFNGLGDRKSFTLT---VRG-SIKGFVVSASLVWSDGVHYVRSPITIT 618
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 377/664 (56%), Gaps = 37/664 (5%)
Query: 117 TTYSPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEE 176
TT++ FL L GLW A+ L +DVIV V+D+GIWPE +FQD GMP +P RWKG C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 177 GTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVAN 236
GT+F+ S CN KLIGA F KG + +N T++ S RD GHGTH AS AGN
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMN--SARDTDGHGTHCASITAGNFAKG 118
Query: 237 ANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVAXXXXXXXXXXXXXXR 296
+ FG A G A G+ +R+A YK ++ G +SD++AA+D+AVA
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFI 178
Query: 297 PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKL 356
P Y D ++IASFGA GV VS SAGN GP I +++N +PWI+ VA+ +TDR+F + L
Sbjct: 179 PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 357 GNGHSFEGSSLYSGKG-SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNS 415
GNG G SL+ + + P+++ KT +E ++ N + IVIC +
Sbjct: 239 GNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENP---ENTIVIC----DD 291
Query: 416 RTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVL-PAATLGASAGKAVKKYVNSTKRPT 474
+Q+++ A + E + A P + GK V YV ++ PT
Sbjct: 292 NGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPT 351
Query: 475 ASIVFKGTVFG-NPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWP-----ATTSP 528
A+I F+ T PAPV+A+ S+RGPS + KPD+ APGV ILAA+P +
Sbjct: 352 ATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGT 411
Query: 529 SMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNS 588
++L S D + + SGTSM+ PH +G+AA+LK+ H +WS +AI+SA+MTTA L+N
Sbjct: 412 NILLSTD----YILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRK 467
Query: 589 PIADVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALF 648
PI D S + AT G+GHVDP A DPGL+YD +DY++ LCSLN+T Q
Sbjct: 468 PIKD---SDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTI 524
Query: 649 A--GGNFTCPNPSAFHPGKLNYPSFAV--NFKGNVKNMSLEYERSVTNVGTSYCTYAVKV 704
A + C NPSA LNYPSF + +GN + +++R+VTNVG TY K+
Sbjct: 525 ARSSASHNCSNPSA----DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKL 580
Query: 705 EEPNGVLVTITPPILSFQKIGEILSYKVT--FVSLRGASNESFGSLTWV--SGKYAVKSP 760
+ P ++++P IL F+ E SY +T ++ G S + GS+TWV +G ++V+SP
Sbjct: 581 KAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQS-RNVGSITWVEQNGNHSVRSP 639
Query: 761 IAVT 764
I +
Sbjct: 640 IVTS 643
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 20/129 (15%)
Query: 490 VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMS 549
VI FSSRGP+ + +KP+V APG I+AA + TS +D + GT+M+
Sbjct: 308 VITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPIND----YYTAAPGTAMA 361
Query: 550 CPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGS 609
PHV+G+AALL H W+ +K+AL+ TA + + IAD+ A+G+
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETADIV--KPDEIADI------------AYGA 407
Query: 610 GHVDPESAS 618
G V+ A+
Sbjct: 408 GRVNAYKAA 416
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKA 261
V+G ++ +P D GHGTH AS AAG A + GK GM +++ K
Sbjct: 161 VIGWVDFVNGKTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKV 213
Query: 262 CWSLGCSS-SDILAAIDKAVAXXXXXXXXXXXXXXRPYYR----DTVAIASFGATQSGVF 316
G S SDI+ +D AV D+++ A A +G+
Sbjct: 214 LNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLV 273
Query: 317 VSCSAGNSGPSISTV 331
V +AGNSGP+ TV
Sbjct: 274 VVVAAGNSGPNKYTV 288
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS G L D+ APGVN+ + +P +T S+ +GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGSTYASL-------------NGTSMATP 219
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRN 587
HV+G+AAL+K + WS I++ L TA L N N
Sbjct: 220 HVAGVAALVKQKNPSWSNVQIRNHLKNTATGLGNTN 255
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 25/170 (14%)
Query: 400 KLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL-IADAHVLPAATLGAS 458
K VKGKI + +RG K K AG G+L+ ++ +G + + + +PAA +
Sbjct: 286 KDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRK 345
Query: 459 AGKAVKKYVNSTKRPTASIVFKGTVFGNPAP---VIASFSSRGPSLVGHDVIKPDVTAPG 515
G +K NS K +I F T P ++ FSS G + G+ IKPD+ APG
Sbjct: 346 DGLLLKD--NSKK----TITFNATPKVLPTASDTKLSRFSSWGLTADGN--IKPDIAAPG 397
Query: 516 VNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHE 565
+IL++ + +SGTSMS P V+G+ LL+ +E
Sbjct: 398 QDILSSVANNK-------------YAKLSGTSMSAPLVAGIMGLLQKQYE 434
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGTSM+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGNK-------------YGAKSGTSMASP 216
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L N
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGN 250
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
A FSS GP L DV APGV+I + P + +SGTSM+ P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTLPGGK-------------YGALSGTSMASP 216
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H +W+ ++S+L TA T L +F +G G
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA------------------TKLGDSFYYGKGL 258
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 259 INVEAAAQ 266
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS G L D+ APGVN+ + +P +T S+ +GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGSTYASL-------------NGTSMATP 219
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRN 587
HV+G AAL+K + WS I++ L TA +L + N
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN 255
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGTSM+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGNK-------------YGAKSGTSMASP 216
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H +W+ ++S+L T T L +F +G G
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTT------------------TKLGDSFYYGKGL 258
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 259 INVEAAAQ 266
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS G L D+ APGVN+ + +P +T S+ +GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGSTYASL-------------NGTSMATP 219
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRN 587
HV+G AAL+K + WS I++ L TA +L + N
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN 255
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS G L D+ APGVN+ + +P +T S+ +GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGSTYASL-------------NGTSMATP 219
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRN 587
HV+G AAL+K + WS I++ L TA +L + N
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN 255
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS G L D+ APGVN+ + +P +T S+ +GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGSTYASL-------------NGTSMATP 219
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRN 587
HV+G AAL+K + WS I++ L TA +L + N
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN 255
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS G L D+ APGVN+ + +P +T S+ +GTSM+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGSTYASL-------------NGTSMATP 219
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRN 587
HV+G AAL+K + WS I++ L TA +L + N
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN 255
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I++ P + SGT+M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTLPGNK-------------YGAKSGTAMASP 216
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H +W+ ++S+L T T L +F +G G
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTT------------------TKLGDSFYYGKGL 258
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 259 INVEAAAQ 266
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTLPGNK-------------YGAYSGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAYNGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H +W+ ++S+L T T L +F +G G
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTT------------------TKLGDSFYYGKGL 267
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 268 INVEAAAQ 275
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
A FSS GP L DV APGV+I + P + +SGT+M+ P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTLPGGK-------------YGALSGTAMASP 216
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H +W+ ++S+L TA T L +F +G G
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA------------------TKLGDSFYYGKGL 258
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 259 INVEAAAQ 266
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTLPGNK-------------YGAKSGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTLPGNK-------------YGAYSGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTYLGD 259
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAYNGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGD 259
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAYNGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGD 259
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTLPGNK-------------YGAKSGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I++ P + SGT+M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTLPGNK-------------YGAKSGTAMASP 216
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 250
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAKSGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS G L D+ APGVN+ + +P +T S+ +GT M+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGSTYASL-------------NGTXMATP 219
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRN 587
HV+G AAL+K + WS I++ L TA +L + N
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN 255
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGT M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGNK-------------YGAKSGTXMASP 216
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H +W+ ++S+L T T L +F +G G
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTT------------------TKLGDSFYYGKGL 258
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 259 INVEAAAQ 266
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS G L D+ APGVN+ + +P +T S+ +GT M+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGSTYASL-------------NGTXMATP 219
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRN 587
HV+G AAL+K + WS I++ L TA +L + N
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN 255
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAYNGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS G L D+ APGVN+ + +P +T S+ +GT M+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGSTYASL-------------NGTXMATP 219
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRN 587
HV+G AAL+K + WS I++ L TA +L + N
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN 255
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAYNGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS G L D+ APGVN+ + +P +T S+ +GT M+ P
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYPGSTYASL-------------NGTXMATP 219
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRN 587
HV+G AAL+K + WS I++ L TA +L + N
Sbjct: 220 HVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN 255
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGT M+ P
Sbjct: 175 ASFSSVGPEL--------DVMAPGVSIWSTLPGNK-------------YGAKSGTXMASP 213
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H +W+ ++S+L T T L +F +G G
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENTT------------------TKLGDSFYYGKGL 255
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 256 INVEAAAQ 263
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAYSGTXMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAYSGTXMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAKSGTXMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + +GT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAYNGTXMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + +GT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAYNGTXMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 39/134 (29%)
Query: 486 NPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISG 545
N A ASFSS G L DV APGV+I + P T + +G
Sbjct: 181 NSANQRASFSSAGSEL--------DVMAPGVSIQSTLPGGT-------------YGAYNG 219
Query: 546 TSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAF 605
TSM+ PHV+G AAL+ S H W+ A ++ L +TA T L ++F
Sbjct: 220 TSMATPHVAGAAALILSKHPTWTNAQVRDRLESTA------------------TYLGSSF 261
Query: 606 AFGSGHVDPESASD 619
+G G ++ ++A+
Sbjct: 262 YYGKGLINVQAAAQ 275
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS G L DV APGV+I + P T + +GT M+ P
Sbjct: 187 ASFSSVGSEL--------DVMAPGVSIQSTLPGGT-------------YGAYNGTXMATP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H W+ A ++ L +TA L N
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGN 259
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS G L DV APGV+I + P T + +GT M+ P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSIQSTLPGGT-------------YGAYNGTCMATP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H W+ A ++ L +TA L N
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGN 259
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 21/94 (22%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS GP L DV APGV+I + P + +GTS + P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAYNGTSXASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNN 585
HV+G AAL+ S H +W+ ++S+L T L +
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD 259
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS G L +V APG + + +P T + ++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H + S + +++ L +TA T L ++F +G G
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA------------------TYLGSSFYYGKGL 266
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 267 INVEAAAQ 274
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS G L +V APG + + +P T + ++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H + S + +++ L +TA T L ++F +G G
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA------------------TYLGSSFYYGKGL 266
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 267 INVEAAAQ 274
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS G L +V APG + + +P T + ++GTSM+ P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H + S + +++ L +TA T L ++F +G G
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA------------------TYLGSSFYYGKGL 267
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 268 INVEAAAQ 275
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS G L +V APG + + +P T + ++GTSM+ P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 225
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H + S + +++ L +TA T L ++F +G G
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA------------------TYLGSSFYYGKGL 267
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 268 INVEAAAQ 275
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS G L +V APG + + +P T + ++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H + S + +++ L +TA T L ++F +G G
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA------------------TYLGSSFYYGKGL 266
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 267 INVEAAAQ 274
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS G L +V APG + + +P T + ++GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H + S + +++ L +TA T L ++F +G G
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA------------------TYLGSSFYYGKGL 266
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 267 INVEAAAQ 274
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS G L +V APGV++ + +P+ T + ++GTSM+ P
Sbjct: 186 ASFSSVGSEL--------EVMAPGVSVYSTYPSNT-------------YTSLNGTSMASP 224
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S + S + +++ L +TA T L +F +G G
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTA------------------TNLGDSFYYGKGL 266
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 267 INVEAAAQ 274
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 39/128 (30%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFSS G L +V APG + + +P T + ++GT M+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTXMASP 224
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HV+G AAL+ S H + S + +++ L +TA T L ++F +G G
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA------------------TYLGSSFYYGKGL 266
Query: 612 VDPESASD 619
++ E+A+
Sbjct: 267 INVEAAAQ 274
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 40/135 (29%)
Query: 490 VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVL---FNIISGT 546
+ ASFS+ G + D+ APG +IL S + S RR + ++ ++GT
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDIL---------STVDSGTRRPVSDAYSFMAGT 275
Query: 547 SMSCPHVSGLAALL----KSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLA 602
SM+ PHVSG+AAL+ SV+++ + A +K L++T N R
Sbjct: 276 SMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR---------------- 319
Query: 603 TAFAFGSGHVDPESA 617
A GSG VD E+A
Sbjct: 320 LDRALGSGIVDAEAA 334
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 40/135 (29%)
Query: 490 VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVL---FNIISGT 546
+ ASFS+ G + D+ APG +IL S + S RR + ++ ++GT
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDIL---------STVDSGTRRPVSDAYSFMAGT 275
Query: 547 SMSCPHVSGLAALL----KSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLA 602
SM+ PHVSG+AAL+ SV+++ + A +K L++T N R
Sbjct: 276 SMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR---------------- 319
Query: 603 TAFAFGSGHVDPESA 617
A GSG VD E+A
Sbjct: 320 LDRALGSGIVDAEAA 334
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 40/135 (29%)
Query: 490 VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVL---FNIISGT 546
+ ASFS+ G + D+ APG +IL S + S RR + ++ ++GT
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDIL---------STVDSGTRRPVSDAYSFMAGT 275
Query: 547 SMSCPHVSGLAALL----KSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLA 602
SM+ PHVSG+AAL+ SV+++ + A +K L++T N R
Sbjct: 276 SMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR---------------- 319
Query: 603 TAFAFGSGHVDPESA 617
A GSG VD E+A
Sbjct: 320 LDRALGSGIVDAEAA 334
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 25/170 (14%)
Query: 400 KLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL-IADAHVLPAATLGAS 458
K VKGKI + +RG K + K AG G+L+ ++ +G + + + PAA +
Sbjct: 277 KDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRK 336
Query: 459 AGKAVKKYVNSTKRPTASIVFKGTVFGNPAP---VIASFSSRGPSLVGHDVIKPDVTAPG 515
G +K P +I F T P ++ FSS G + G+ IKPD+ APG
Sbjct: 337 DGLLLK------DNPQKTITFNATPKVLPTASGTKLSRFSSWGLTADGN--IKPDIAAPG 388
Query: 516 VNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHE 565
+IL++ + +SGTS S P V+G+ LL+ +E
Sbjct: 389 QDILSSVANNK-------------YAKLSGTSXSAPLVAGIXGLLQKQYE 425
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 23/74 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R +P+V+APGV+IL+ +P DD + + GT+M+
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTYP----------DDS---YETLMGTAMAT 249
Query: 551 PHVSGLAALLKSVH 564
PHVSG+ AL+++ +
Sbjct: 250 PHVSGVVALIQAAY 263
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 23/74 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R +P+V+APGV+IL+ +P DD + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYP----------DDS---YETLMGTAMAT 327
Query: 551 PHVSGLAALLKSVH 564
PHVSG+ AL+++ +
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 23/74 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R +P+V+APGV+IL+ +P DD + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYP----------DDS---YETLMGTAMAT 327
Query: 551 PHVSGLAALLKSVH 564
PHVSG+ AL+++ +
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 23/74 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R +P+V+APGV+IL+ +P DD + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYP----------DDS---YETLMGTAMAT 327
Query: 551 PHVSGLAALLKSVH 564
PHVSG+ AL+++ +
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 23/74 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R +P+V+APGV+IL+ +P DD + + GT+M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYP----------DDS---YETLMGTAMAT 247
Query: 551 PHVSGLAALLKSVH 564
PHVSG+ AL+++ +
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 23/74 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R +P+V+APGV+IL+ +P DD + + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYP----------DDS---YETLMGTAMAT 327
Query: 551 PHVSGLAALLKSVH 564
PHVSG+ AL+++ +
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 23/74 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R +P+V+APGV+IL+ +P DD + + GT+M+
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTYP----------DDS---YETLMGTAMAT 324
Query: 551 PHVSGLAALLKSVH 564
PHVSG+ AL+++ +
Sbjct: 325 PHVSGVVALIQAAY 338
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 23/74 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R +P+V+APGV+IL+ +P DD + + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYP----------DDS---YETLMGTAMAT 258
Query: 551 PHVSGLAALLKSVH 564
PHVSG+ AL+++ +
Sbjct: 259 PHVSGVVALIQAAY 272
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 23/74 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R +P+V+APGV+IL+ +P DD + + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYP----------DDS---YETLMGTAMAT 258
Query: 551 PHVSGLAALLKSVH 564
PHVSG+ AL+++ +
Sbjct: 259 PHVSGVVALIQAAY 272
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 23/74 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R +P+V+APGV+IL+ +P DD + + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYP----------DDS---YETLMGTXMAT 247
Query: 551 PHVSGLAALLKSVH 564
PHVSG+ AL+++ +
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 23/74 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R +P+V+APGV+IL+ +P DD + + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYP----------DDS---YETLMGTCMAT 247
Query: 551 PHVSGLAALLKSVH 564
PHVSG+ AL+++ +
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 21/121 (17%)
Query: 491 IASFSSRG-PSLVGHDVIKP---DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGT 546
+A +SSRG S G VI+ +++APG ++ + W +N ISGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 547 SMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFA 606
SM+ PHVSGLAA + + + S ++S L A +++ + A +G A+ F
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIG----DDYASGFG 305
Query: 607 F 607
F
Sbjct: 306 F 306
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATT-SPSMLKSDDRRVLFNIISGTSMS 549
+A FSSRGP+ G IKPDV APG IL+A + S + D + + + GTSM+
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAY--MGGTSMA 257
Query: 550 CPHVSGLAALLK 561
P V+G A L+
Sbjct: 258 TPIVAGNVAQLR 269
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Query: 491 IASFSSRG-PSLVGHDVIKP---DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGT 546
+A +SSRG S G VI+ +++APG ++ + W +N ISGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 547 SMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFA 606
M+ PHVSGLAA + + + S ++S L A +++ + A +G A+ F
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIG----DDYASGFG 305
Query: 607 F 607
F
Sbjct: 306 F 306
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 19/89 (21%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
+SFS+ G L D+ APG +I ++W + S + N ISGTSM+ P
Sbjct: 188 SSFSNYGTCL--------DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASP 228
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTA 580
HV+G+AAL + + S A + + L T A
Sbjct: 229 HVAGVAALYLDENPNLSPAQVTNLLKTRA 257
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 510 DVTAPGVNILAA----WPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHE 565
D+T P V++ A A S S+ + +GTSM+ PHVSG+A L+ S H
Sbjct: 328 DITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHP 387
Query: 566 DWSTAAIKSALMTTAYTL 583
+ S + +++AL TA L
Sbjct: 388 ECSASQVRAALNATADDL 405
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 15/71 (21%)
Query: 510 DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWST 569
DV APG +I + +P +T S+ SGTSM+ PHV+G+A LL S + S
Sbjct: 201 DVAAPGSSIYSTYPTSTYASL-------------SGTSMATPHVAGVAGLLAS--QGRSA 245
Query: 570 AAIKSALMTTA 580
+ I++A+ TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATT-SPSMLKSDDRRVLFNIISGTSMS 549
+A FSSRGP+ G IKPDV APG IL+A + S + D + + GTS +
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAY--XGGTSXA 257
Query: 550 CPHVSGLAALLK 561
P V+G A L+
Sbjct: 258 TPIVAGNVAQLR 269
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Query: 510 DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWST 569
D+ APG NIL+ W T+ N ISGTSM+ PH+ GL A L + E +
Sbjct: 203 DIFAPGSNILSTWIGGTT-------------NTISGTSMATPHIVGLGAYLAGL-EGFPG 248
Query: 570 AAIKSALMTTAYTLNNRN 587
A AL TL+ +N
Sbjct: 249 A---QALCKRIQTLSTKN 263
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 23/90 (25%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+ASFS+ G + DV APGV+I++ M SGTSM+
Sbjct: 191 LASFSNYGTWV--------DVVAPGVDIVSTITGNRYAYM-------------SGTSMAS 229
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
PHV+GLAALL S + + I+ A+ TA
Sbjct: 230 PHVAGLAALLAS--QGRNNIEIRQAIEQTA 257
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 508 KPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH--- 564
K + APG IL A P T P L +GTSM+ P ++G++ALL S+
Sbjct: 247 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 294
Query: 565 -EDWSTAAIKSALMTTAYTLNNR--NSPIADVGGSSDTPLATAFAFGSGHV 612
+ A+++AL+ TA + P + G + P A FG V
Sbjct: 295 GKPVDAEAVRTALLKTAIPCDPEVVEEPERCLRGFVNIPGAMKVLFGQPSV 345
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 21/82 (25%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
+SFS+ G L D+ PG +IL+ W ++ S ISGTSM+ P
Sbjct: 190 SSFSNYGSVL--------DIFGPGTDILSTWIGGSTRS-------------ISGTSMATP 228
Query: 552 HVSGLAALLKSVHEDWSTAAIK 573
HV+GLAA L ++ + + +A +
Sbjct: 229 HVAGLAAYLMTLGKTTAASACR 250
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 508 KPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH--- 564
K + APG IL A P T P L +GTSM+ P ++G++ALL S+
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 565 -EDWSTAAIKSALMTTAYTLNNR--NSPIADVGGSSDTPLATAFAFGS 609
+ A+++AL+ TA + P + G + P A FG
Sbjct: 313 GKPVDAEAVRTALLKTAIPCDPEVVEEPERCLRGFVNIPGAMKVLFGQ 360
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 508 KPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH--- 564
K + APG IL A P T P L +GTSM+ P ++G++ALL S+
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 565 -EDWSTAAIKSALMTTAYTLNNR--NSPIADVGGSSDTPLATAFAFGS 609
+ A+++AL+ TA + P + G + P A FG
Sbjct: 313 GKPVDAEAVRTALLKTAIPCDPEVVEEPERCLRGFVNIPGAMKVLFGQ 360
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 510 DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWST 569
DV APG I + +P +T S+ SGTSM+ PHV+G+A LL S + S
Sbjct: 201 DVAAPGSWIYSTYPTSTYASL-------------SGTSMATPHVAGVAGLLAS--QGRSA 245
Query: 570 AAIKSALMTTA 580
+ I++A+ TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 21/82 (25%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
+SFS+ G L D+ PG +IL+ W ++ S ISGTSM+ P
Sbjct: 190 SSFSNYGSVL--------DIFGPGTSILSTWIGGSTRS-------------ISGTSMATP 228
Query: 552 HVSGLAALLKSVHEDWSTAAIK 573
HV+GLAA L ++ + + +A +
Sbjct: 229 HVAGLAAYLMTLGKTTAASACR 250
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 212 YRSPRDAQGHGTHTASTAAGN---IVANANLFGL 242
Y S RD GHGTH A T +V LFG+
Sbjct: 60 YYSSRDGNGHGTHCAGTVGSRTYGVVKKTQLFGV 93
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 21/82 (25%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
+SFS+ G L D+ PG +IL+ W ++ S ISGTSM+ P
Sbjct: 190 SSFSNYGSVL--------DIFGPGTSILSTWIGGSTRS-------------ISGTSMATP 228
Query: 552 HVSGLAALLKSVHEDWSTAAIK 573
HV+GLAA L ++ + + +A +
Sbjct: 229 HVAGLAAYLMTLGKTTAASACR 250
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRV-----LFNIISG 545
+A FSSR + V APGV IL+ P S ++ ++ G
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 546 TSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLN 584
TSM+ PHV+G+ A+L + I+ L TA+ N
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFN 418
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 19/91 (20%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS+ G + D+ APG +I +AW + + + ++GTSM+ P
Sbjct: 186 ASFSNYGSCV--------DLFAPGASIPSAWYTSDTATQ-----------TLNGTSMATP 226
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYT 582
HV+G+AAL + + A++ SA++ A T
Sbjct: 227 HVAGVAALYLEQNPSATPASVASAILNGATT 257
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 491 IASFSSRGPSLVGHDVI--KPDV--TAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGT 546
+A FSSRG D + K DV +APG + + W + ISGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTW-------------FDGGYATISGT 248
Query: 547 SMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFA 606
SM+ PH +GLAA + + S ++ L T A ++N+ S + GS D +A+ F
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRA-SVNDILS--GNSAGSGD-DIASGFG 304
Query: 607 F 607
F
Sbjct: 305 F 305
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 510 DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALL 560
D+ APG +I + W + N ISGTSM+ PH++GLAA L
Sbjct: 201 DIFAPGTSITSTWIGGRT-------------NTISGTSMATPHIAGLAAYL 238
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 511 VTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALL----KSVHED 566
+ APG NIL ++ + ++ R + + +GTSM+ PHVSG+AAL+ S+ +
Sbjct: 247 LAAPGTNIL------STIDVGQAGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 567 WSTAAIKSALMTTAYTLNNR 586
+ + + L+ T N R
Sbjct: 301 LTPSELSDILVRTTSRFNGR 320
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 511 VTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALL----KSVHED 566
+ APG NIL ++ + ++ R + + +GTSM+ PHVSG+AAL+ S+ +
Sbjct: 247 LAAPGTNIL------STIDVGQAGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 567 WSTAAIKSALMTTAYTLNNR 586
+ + + L+ T N R
Sbjct: 301 LTPSELSDILVRTTSRFNGR 320
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 19/83 (22%)
Query: 510 DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWST 569
D+ APGV I + + L S + +SGT+M+ PHV+G AL+ ++ ED
Sbjct: 226 DIVAPGVGIKSTY--------LDSG-----YAELSGTAMAAPHVAGALALIINLAED--- 269
Query: 570 AAIKSALMTTAY--TLNNRNSPI 590
A K +L T L R +PI
Sbjct: 270 -AFKRSLSETEIYAQLVRRATPI 291
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 200 ESVVGRINETVDYRSPR----DAQGHGTHTASTAA 230
E ++G +N T DY D GHGTH A T A
Sbjct: 61 ERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVA 95
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 19/83 (22%)
Query: 510 DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWST 569
D+ APGV I + + L S + +SGT+M+ PHV+G AL+ ++ ED
Sbjct: 226 DIVAPGVGIKSTY--------LDSG-----YAELSGTAMAAPHVAGALALIINLAED--- 269
Query: 570 AAIKSALMTTAY--TLNNRNSPI 590
A K +L T L R +PI
Sbjct: 270 -AFKRSLSETEIYAQLVRRATPI 291
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 200 ESVVGRINETVDYRSPR----DAQGHGTHTASTAA 230
E ++G +N T DY D GHGTH A T A
Sbjct: 61 ERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVA 95
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 19/83 (22%)
Query: 510 DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWST 569
D+ APGV I + + L S + +SGT+M+ PHV+G AL+ ++ ED
Sbjct: 226 DIVAPGVGIKSTY--------LDSG-----YAELSGTAMAAPHVAGALALIINLAED--- 269
Query: 570 AAIKSALMTTAY--TLNNRNSPI 590
A K +L T L R +PI
Sbjct: 270 -AFKRSLSETEIYAQLVRRATPI 291
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 200 ESVVGRINETVDYRSPR----DAQGHGTHTASTAA 230
E ++G +N T DY D GHGTH A T A
Sbjct: 61 ERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVA 95
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 19/83 (22%)
Query: 510 DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWST 569
D+ APGV I + + L S + +SGT+M+ PHV+G AL+ ++ ED
Sbjct: 208 DIVAPGVGIKSTY--------LDSG-----YAELSGTAMAAPHVAGALALIINLAED--- 251
Query: 570 AAIKSALMTTAY--TLNNRNSPI 590
A K +L T L R +PI
Sbjct: 252 -AFKRSLSETEIYAQLVRRATPI 273
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 200 ESVVGRINETVDYRSPR----DAQGHGTHTASTAA 230
E ++G +N T DY D GHGTH A T A
Sbjct: 43 ERIIGGVNLTTDYGGDETNFSDNNGHGTHVAGTVA 77
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+ +++SR P + G + V APG I + T S S L + GTS +
Sbjct: 419 VYTWTSRDPCIDGGQGVT--VCAPGGAIASVPQFTXSKSQLXN-----------GTSXAA 465
Query: 551 PHVSGLAAL----LKSVHEDWSTAAIKSALMTTAYTL 583
PHV+G AL LK + ++S +IK A+ TA L
Sbjct: 466 PHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKL 502
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 13/50 (26%)
Query: 510 DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAAL 559
D+ APG I +AW + ISGTSM+ PHV+G+AAL
Sbjct: 196 DLFAPGSQIKSAWYDGG-------------YKTISGTSMATPHVAGVAAL 232
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 508 KPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH--- 564
K + APG +IL A P + + SGTS + P VSG+AALL S+
Sbjct: 198 KQGILAPGKDILGAKPNGGTIRL-------------SGTSFATPIVSGVAALLLSLQIKR 244
Query: 565 -EDWSTAAIKSALMTTAYTLNNRNS 588
E +K+AL+ +A N +++
Sbjct: 245 GEKPDPQKVKNALLASATPCNPKDT 269
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 542 IISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPI 590
+++GTS + P SG ALL S + D S ++ L +A ++ ++ P+
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPV 379
>pdb|1YVL|A Chain A, Structure Of Unphosphorylated Stat1
pdb|1YVL|B Chain B, Structure Of Unphosphorylated Stat1
Length = 683
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 700 YAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNESFGSL 748
Y + V EP + +TPP + ++ E+LS++ + V+ RG + + L
Sbjct: 474 YNMLVAEPRNLSFFLTPPCARWAQLSEVLSWQFSSVTKRGLNVDQLNML 522
>pdb|1BF5|A Chain A, Tyrosine Phosphorylated Stat-1DNA COMPLEX
Length = 575
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 700 YAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNESFGSL 748
Y + V EP + +TPP + ++ E+LS++ + V+ RG + + L
Sbjct: 339 YNMLVAEPRNLSFFLTPPCARWAQLSEVLSWQFSSVTKRGLNVDQLNML 387
>pdb|4I1U|A Chain A, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1U|B Chain B, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1V|A Chain A, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
pdb|4I1V|B Chain B, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
Length = 210
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 476 SIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSD 534
+I G + V F++RG SLV D+I +TAP + A T P+ + +D
Sbjct: 11 AIGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAAD 69
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 630 DYLDYLCSLNYTSLQLALFAGGNFTCPNPSAFHPGKLNYPSFA 672
D+ +L SL S LA+F G+ + P A HP L++P A
Sbjct: 84 DFATHLVSLLRNSDTLAVFILGSASLAXPGADHPXILDFPESA 126
>pdb|1BG1|A Chain A, Transcription Factor Stat3bDNA COMPLEX
Length = 596
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 692 NVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNESFGSL 748
N S Y + P V PPI ++ ++ E+LS++ + + RG S E +L
Sbjct: 346 NAWASILWYNMLTNNPKNVNFFTKPPIGTWDQVAEVLSWQFSSTTKRGLSIEQLTTL 402
>pdb|3CWG|A Chain A, Unphosphorylated Mouse Stat3 Core Fragment
pdb|3CWG|B Chain B, Unphosphorylated Mouse Stat3 Core Fragment
Length = 562
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 692 NVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNESFGSL 748
N S Y + P V PPI ++ ++ E+LS++ + + RG S E +L
Sbjct: 346 NAWASILWYNMLTNNPKNVNFFTKPPIGTWDQVAEVLSWQFSSTTKRGLSIEQLTTL 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,830,296
Number of Sequences: 62578
Number of extensions: 907520
Number of successful extensions: 2304
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1989
Number of HSP's gapped (non-prelim): 275
length of query: 766
length of database: 14,973,337
effective HSP length: 106
effective length of query: 660
effective length of database: 8,340,069
effective search space: 5504445540
effective search space used: 5504445540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)