Query 004242
Match_columns 766
No_of_seqs 447 out of 3150
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 20:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.9E-53 4.1E-58 457.4 29.0 304 113-581 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 3.1E-50 6.7E-55 448.7 23.3 301 122-624 294-618 (639)
3 cd07478 Peptidases_S8_CspA-lik 100.0 1.2E-48 2.6E-53 437.1 24.6 416 137-610 1-455 (455)
4 cd07497 Peptidases_S8_14 Pepti 100.0 3.5E-48 7.5E-53 413.0 25.2 286 139-580 1-311 (311)
5 cd05562 Peptidases_S53_like Pe 100.0 3.3E-48 7.2E-53 407.2 24.5 270 136-619 1-274 (275)
6 cd07479 Peptidases_S8_SKI-1_li 100.0 6.2E-48 1.3E-52 402.3 24.9 242 133-583 1-253 (255)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 3.6E-47 7.8E-52 416.2 28.3 312 131-619 1-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.7E-46 3.6E-51 404.7 26.6 293 130-621 3-300 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 6.2E-46 1.3E-50 389.0 25.7 246 132-585 2-254 (267)
10 cd07483 Peptidases_S8_Subtilis 100.0 2.8E-45 6.2E-50 390.0 25.2 269 140-581 1-291 (291)
11 cd07474 Peptidases_S8_subtilis 100.0 7.8E-45 1.7E-49 389.1 27.6 289 139-617 1-295 (295)
12 cd05561 Peptidases_S8_4 Peptid 100.0 3.1E-45 6.7E-50 378.5 23.4 234 142-610 1-239 (239)
13 cd07481 Peptidases_S8_Bacillop 100.0 3.3E-44 7.1E-49 377.5 25.1 247 139-581 1-264 (264)
14 KOG1153 Subtilisin-related pro 100.0 6.3E-45 1.4E-49 378.4 18.6 341 21-582 77-462 (501)
15 cd07493 Peptidases_S8_9 Peptid 100.0 5.9E-44 1.3E-48 375.1 23.8 243 141-581 1-261 (261)
16 cd07485 Peptidases_S8_Fervidol 100.0 1.2E-43 2.5E-48 375.2 25.8 263 131-579 1-273 (273)
17 cd04857 Peptidases_S8_Tripepti 100.0 1.6E-43 3.4E-48 383.9 27.3 220 216-583 182-412 (412)
18 cd07487 Peptidases_S8_1 Peptid 100.0 9.5E-43 2.1E-47 366.9 25.4 256 139-581 1-264 (264)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 2.5E-42 5.3E-47 361.7 24.7 232 132-582 17-255 (255)
20 cd07496 Peptidases_S8_13 Pepti 100.0 5.4E-42 1.2E-46 364.8 25.5 207 214-579 66-285 (285)
21 cd07484 Peptidases_S8_Thermita 100.0 6.5E-42 1.4E-46 359.6 25.6 241 129-583 18-259 (260)
22 cd04847 Peptidases_S8_Subtilis 100.0 1.8E-42 3.8E-47 369.6 20.6 263 142-581 1-291 (291)
23 cd07490 Peptidases_S8_6 Peptid 100.0 1.3E-41 2.7E-46 356.3 24.9 253 141-581 1-254 (254)
24 cd07494 Peptidases_S8_10 Pepti 100.0 1.3E-41 2.9E-46 361.7 23.2 249 129-584 10-286 (298)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 2.4E-41 5.2E-46 361.8 23.8 277 135-581 2-293 (293)
26 cd07498 Peptidases_S8_15 Pepti 100.0 3.6E-41 7.7E-46 350.2 23.3 239 142-579 1-242 (242)
27 cd07480 Peptidases_S8_12 Pepti 100.0 8.6E-41 1.9E-45 357.4 25.0 264 134-615 2-296 (297)
28 cd07473 Peptidases_S8_Subtilis 100.0 3.1E-40 6.7E-45 346.8 26.3 249 140-581 2-259 (259)
29 cd04843 Peptidases_S8_11 Pepti 100.0 8.9E-41 1.9E-45 351.3 20.8 244 130-581 5-277 (277)
30 cd07477 Peptidases_S8_Subtilis 100.0 7.2E-40 1.6E-44 337.5 24.5 226 141-579 1-229 (229)
31 cd07482 Peptidases_S8_Lantibio 100.0 4.5E-40 9.7E-45 352.1 23.8 253 141-579 1-294 (294)
32 cd07491 Peptidases_S8_7 Peptid 100.0 2.5E-40 5.4E-45 342.5 20.9 156 139-345 2-170 (247)
33 PF00082 Peptidase_S8: Subtila 100.0 1.6E-40 3.5E-45 353.3 17.7 274 143-619 1-282 (282)
34 cd04059 Peptidases_S8_Protein_ 100.0 1.4E-39 3.1E-44 348.7 19.6 248 129-581 28-297 (297)
35 cd07492 Peptidases_S8_8 Peptid 100.0 9.6E-39 2.1E-43 327.5 23.8 221 141-581 1-222 (222)
36 cd04848 Peptidases_S8_Autotran 100.0 6.5E-38 1.4E-42 330.3 22.9 242 138-581 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 9.1E-36 2E-40 317.4 16.6 359 24-619 49-465 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 1.6E-32 3.4E-37 304.9 23.3 238 218-619 309-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 2.3E-32 4.9E-37 282.1 16.7 192 215-579 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 6.8E-31 1.5E-35 271.3 24.1 196 214-579 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 1.4E-23 3E-28 240.6 22.6 250 130-582 130-398 (508)
42 KOG3526 Subtilisin-like propro 99.8 9.1E-22 2E-26 200.3 7.9 154 130-327 151-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.8 1.7E-17 3.8E-22 181.7 17.7 99 247-348 83-198 (361)
44 cd02120 PA_subtilisin_like PA_ 99.3 1.8E-11 3.9E-16 113.7 13.0 122 354-476 2-125 (126)
45 cd02133 PA_C5a_like PA_C5a_lik 99.3 1.4E-11 3E-16 117.0 11.9 117 373-501 25-142 (143)
46 PF05922 Inhibitor_I9: Peptida 98.8 6.3E-09 1.4E-13 88.7 5.4 82 26-116 1-82 (82)
47 cd04816 PA_SaNapH_like PA_SaNa 98.8 6.9E-08 1.5E-12 89.0 11.4 97 375-474 18-119 (122)
48 cd04818 PA_subtilisin_1 PA_sub 98.7 7.2E-08 1.6E-12 88.4 9.9 89 386-475 24-116 (118)
49 cd02127 PA_hPAP21_like PA_hPAP 98.7 8.8E-08 1.9E-12 87.2 10.3 88 389-477 21-116 (118)
50 cd02122 PA_GRAIL_like PA _GRAI 98.7 7.1E-08 1.5E-12 90.3 9.9 89 388-476 43-137 (138)
51 cd02129 PA_hSPPL_like PA_hSPPL 98.7 1.1E-07 2.3E-12 86.2 9.6 91 374-469 20-114 (120)
52 PF02225 PA: PA domain; Inter 98.7 4.9E-08 1.1E-12 86.7 6.8 79 389-467 19-101 (101)
53 cd02124 PA_PoS1_like PA_PoS1_l 98.6 6.1E-07 1.3E-11 83.1 12.2 98 376-474 28-126 (129)
54 cd02126 PA_EDEM3_like PA_EDEM3 98.6 2.3E-07 4.9E-12 85.8 9.3 85 389-474 27-123 (126)
55 cd00538 PA PA: Protease-associ 98.6 3.1E-07 6.7E-12 85.0 9.4 87 388-474 29-123 (126)
56 cd02130 PA_ScAPY_like PA_ScAPY 98.5 3.7E-07 8E-12 84.2 9.3 95 375-476 23-121 (122)
57 KOG3525 Subtilisin-like propro 98.5 5.5E-07 1.2E-11 100.0 11.1 158 129-329 22-189 (431)
58 COG4934 Predicted protease [Po 98.5 1.1E-06 2.4E-11 104.8 13.6 94 247-343 288-395 (1174)
59 cd02132 PA_GO-like PA_GO-like: 98.5 7E-07 1.5E-11 84.1 9.5 84 389-475 48-137 (139)
60 cd02125 PA_VSR PA_VSR: Proteas 98.5 6.9E-07 1.5E-11 82.5 9.2 88 388-475 21-125 (127)
61 cd04813 PA_1 PA_1: Protease-as 98.4 9.3E-07 2E-11 80.4 8.7 82 387-470 25-112 (117)
62 cd04817 PA_VapT_like PA_VapT_l 98.4 1.3E-06 2.7E-11 81.6 9.3 74 397-470 50-134 (139)
63 cd02123 PA_C_RZF_like PA_C-RZF 98.4 1.6E-06 3.5E-11 82.9 9.4 84 389-472 50-142 (153)
64 PF06280 DUF1034: Fn3-like dom 98.2 1.2E-05 2.7E-10 72.8 10.4 79 683-762 9-112 (112)
65 cd04819 PA_2 PA_2: Protease-as 98.1 4.4E-05 9.5E-10 70.8 12.5 91 373-471 22-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.4 0.00053 1.1E-08 64.2 8.0 77 398-474 34-131 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 96.8 0.0031 6.8E-08 61.5 7.4 95 373-470 28-156 (183)
68 KOG2442 Uncharacterized conser 96.6 0.0059 1.3E-07 66.5 8.3 79 399-477 91-175 (541)
69 cd04814 PA_M28_1 PA_M28_1: Pro 96.5 0.0062 1.4E-07 57.1 6.4 65 373-439 19-101 (142)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 96.3 0.014 3E-07 54.5 7.7 65 373-439 21-97 (137)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 96.3 0.029 6.3E-07 53.3 9.8 65 373-439 19-101 (151)
72 PF14874 PapD-like: Flagellar- 95.5 0.27 5.9E-06 43.4 12.1 81 682-764 20-100 (102)
73 cd02131 PA_hNAALADL2_like PA_h 95.4 0.018 3.9E-07 54.0 4.2 68 368-439 9-76 (153)
74 cd02121 PA_GCPII_like PA_GCPII 95.1 0.043 9.3E-07 55.5 6.3 60 372-439 43-107 (220)
75 KOG3920 Uncharacterized conser 94.7 0.041 8.9E-07 51.0 4.3 92 387-479 72-173 (193)
76 PF10633 NPCBM_assoc: NPCBM-as 94.1 0.27 6E-06 41.1 7.9 57 682-738 5-62 (78)
77 PF11614 FixG_C: IG-like fold 92.7 0.97 2.1E-05 41.1 9.8 58 682-740 31-88 (118)
78 KOG4628 Predicted E3 ubiquitin 92.5 0.3 6.5E-06 52.4 6.8 81 390-470 63-150 (348)
79 PF06030 DUF916: Bacterial pro 91.2 3.6 7.8E-05 37.7 11.5 78 670-751 18-119 (121)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 89.4 0.91 2E-05 43.5 6.3 63 374-438 22-103 (157)
81 COG1470 Predicted membrane pro 84.5 7.1 0.00015 43.3 10.4 71 682-752 397-469 (513)
82 KOG1114 Tripeptidyl peptidase 81.9 0.95 2.1E-05 53.7 2.6 47 716-764 636-687 (1304)
83 PF00345 PapD_N: Pili and flag 78.8 19 0.00042 32.6 9.9 68 683-752 15-90 (122)
84 TIGR02745 ccoG_rdxA_fixG cytoc 73.1 15 0.00033 41.3 8.9 56 682-738 346-401 (434)
85 PF00635 Motile_Sperm: MSP (Ma 62.8 41 0.00089 29.5 8.0 52 683-737 19-70 (109)
86 COG1470 Predicted membrane pro 61.3 86 0.0019 35.2 11.3 56 682-738 284-345 (513)
87 PF07718 Coatamer_beta_C: Coat 59.3 80 0.0017 29.6 9.2 70 682-752 69-139 (140)
88 smart00635 BID_2 Bacterial Ig- 48.6 49 0.0011 27.6 5.7 40 711-754 4-43 (81)
89 PF08821 CGGC: CGGC domain; I 44.8 1.1E+02 0.0023 27.4 7.4 67 248-319 31-104 (107)
90 PF12690 BsuPI: Intracellular 39.7 1.9E+02 0.0041 24.4 7.8 54 684-738 2-72 (82)
91 PF07705 CARDB: CARDB; InterP 37.9 1.2E+02 0.0027 25.7 6.8 52 682-737 19-72 (101)
92 cd00407 Urease_beta Urease bet 36.9 96 0.0021 27.2 5.6 15 683-697 19-33 (101)
93 PLN03080 Probable beta-xylosid 36.7 70 0.0015 39.1 6.6 52 683-736 685-744 (779)
94 PF00927 Transglut_C: Transglu 36.6 1.7E+02 0.0037 25.7 7.6 56 682-738 15-78 (107)
95 PRK15098 beta-D-glucoside gluc 36.1 82 0.0018 38.5 7.1 53 682-737 667-728 (765)
96 PRK13203 ureB urease subunit b 35.7 1.1E+02 0.0023 27.0 5.7 15 683-697 19-33 (102)
97 TIGR00192 urease_beta urease, 32.6 1.3E+02 0.0029 26.4 5.7 15 683-697 19-33 (101)
98 PRK13202 ureB urease subunit b 32.2 1.1E+02 0.0024 26.9 5.2 14 684-697 21-34 (104)
99 PF02845 CUE: CUE domain; Int 31.9 46 0.00099 24.0 2.5 24 557-580 5-28 (42)
100 COG0832 UreB Urea amidohydrola 30.4 1.2E+02 0.0026 26.5 5.1 15 683-697 19-33 (106)
101 PF07610 DUF1573: Protein of u 30.2 2E+02 0.0043 21.1 5.7 44 688-734 2-45 (45)
102 PF08260 Kinin: Insect kinin p 30.1 24 0.00052 16.2 0.4 6 493-498 3-8 (8)
103 PF05753 TRAP_beta: Translocon 29.7 3.8E+02 0.0082 26.4 9.3 54 682-737 38-98 (181)
104 PF00699 Urease_beta: Urease b 28.1 1.1E+02 0.0025 26.7 4.6 15 683-697 18-32 (100)
105 PRK15019 CsdA-binding activato 27.1 53 0.0012 31.1 2.7 33 541-574 77-109 (147)
106 PF05506 DUF756: Domain of unk 26.9 3.1E+02 0.0066 23.2 7.3 47 683-734 19-65 (89)
107 PRK13201 ureB urease subunit b 26.2 1.8E+02 0.0038 26.9 5.6 15 683-697 19-33 (136)
108 PRK13205 ureB urease subunit b 25.9 1.7E+02 0.0038 27.6 5.6 15 683-697 19-33 (162)
109 TIGR03391 FeS_syn_CsdE cystein 25.8 59 0.0013 30.5 2.7 34 541-575 72-105 (138)
110 PF13940 Ldr_toxin: Toxin Ldr, 25.4 46 0.00099 22.8 1.3 13 548-560 14-26 (35)
111 PF08194 DIM: DIM protein; In 24.3 1.1E+02 0.0024 21.5 3.1 28 1-29 1-28 (36)
112 TIGR01451 B_ant_repeat conserv 24.3 2E+02 0.0042 22.0 4.9 29 682-711 12-42 (53)
113 PRK13204 ureB urease subunit b 23.9 2E+02 0.0043 27.3 5.6 15 683-697 42-56 (159)
114 smart00237 Calx_beta Domains i 23.7 4.1E+02 0.009 22.5 7.5 52 686-737 20-76 (90)
115 PRK09296 cysteine desufuration 22.8 72 0.0016 29.9 2.7 33 541-574 67-99 (138)
116 PF01345 DUF11: Domain of unkn 22.7 1.8E+02 0.0039 23.7 4.9 30 682-712 41-72 (76)
117 TIGR00845 caca sodium/calcium 22.5 6.2E+02 0.013 31.5 11.0 27 556-582 322-348 (928)
118 PRK13198 ureB urease subunit b 22.3 2.2E+02 0.0048 26.9 5.7 15 683-697 47-61 (158)
119 PF02657 SufE: Fe-S metabolism 21.5 83 0.0018 28.9 2.8 33 542-575 59-91 (125)
120 COG2166 sufE Cysteine desulfur 21.2 76 0.0016 29.9 2.5 31 543-574 74-104 (144)
121 PF09244 DUF1964: Domain of un 21.1 1.6E+02 0.0034 23.3 3.7 39 718-756 15-58 (68)
122 PF04255 DUF433: Protein of un 20.9 79 0.0017 24.5 2.2 38 540-577 11-54 (56)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-53 Score=457.40 Aligned_cols=304 Identities=59% Similarity=0.955 Sum_probs=261.6
Q ss_pred cccccCCCCcccCCccCCC--ccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccc
Q 004242 113 LTLHTTYSPHFLGLESGIG--LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLI 190 (766)
Q Consensus 113 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kii 190 (766)
++++++++++|+|+..... +|.++++|+||+|||||||||++||+|.+++..+++..|++.|+.+..+...+||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4688999999999987655 48889999999999999999999999999999999999999999999988889999999
Q ss_pred cccccccccccccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecC-CCCCH
Q 004242 191 GARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWS-LGCSS 269 (766)
Q Consensus 191 g~~~~~~g~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~-~g~~~ 269 (766)
|.++|..+++.... .+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++. ..+..
T Consensus 81 g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 81 GARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 99999877554322 12233455788999999999999999987776666766777899999999999999988 44889
Q ss_pred HHHHHHHHHHHhCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcc
Q 004242 270 SDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRS 349 (766)
Q Consensus 270 ~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~ 349 (766)
+++++||++|++++++|||||||......+.+.+..+...+.++|++||+||||+|+...+.++..||+++||+++
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~---- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc----
Confidence 9999999999999999999999987655566778888888999999999999999988888888999999999831
Q ss_pred eeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCce
Q 004242 350 FPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGA 429 (766)
Q Consensus 350 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~ 429 (766)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccC
Q 004242 430 GMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKP 509 (766)
Q Consensus 430 g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKP 509 (766)
+||
T Consensus 236 -----------------------------------------------------------------------------~~~ 238 (307)
T cd04852 236 -----------------------------------------------------------------------------LKP 238 (307)
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 467
Q ss_pred cEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 510 DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 510 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
||+|||.+|+++++.... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 239 di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 239 DIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999865311 111222348999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=3.1e-50 Score=448.73 Aligned_cols=301 Identities=21% Similarity=0.222 Sum_probs=214.7
Q ss_pred cccCCccC--CCccc--cCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccc
Q 004242 122 HFLGLESG--IGLWD--ATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFK 197 (766)
Q Consensus 122 ~~~g~~~~--~~~~~--~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~ 197 (766)
..|+++.+ ..+|. .+.+|+||+|||||||||++||||.++-..... ...|. ..+. .+++..+ +...
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~-el~Gr----dgiD--dD~nG~v---dd~~ 363 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVK-ELHGR----KGID--DDNNGNV---DDEY 363 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccc-cccCc----cccc--cccCCcc---cccc
Confidence 45676643 45665 456899999999999999999999865100000 00000 0000 0111111 1112
Q ss_pred ccccccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHH
Q 004242 198 GYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAI 276 (766)
Q Consensus 198 g~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai 276 (766)
||++.+++ ..|.|..||||||||||||...++.+ +.||||+|+|+++|+++..+ +..+++++||
T Consensus 364 G~nfVd~~-------~~P~D~~GHGTHVAGIIAA~gnN~~G--------i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI 428 (639)
T PTZ00262 364 GANFVNND-------GGPMDDNYHGTHVSGIISAIGNNNIG--------IVGVDKRSKLIICKALDSHKLGRLGDMFKCF 428 (639)
T ss_pred cccccCCC-------CCCCCCCCcchHHHHHHhccccCCCc--------eeeeecccccceEEEecCCCCccHHHHHHHH
Confidence 33333222 25788999999999999998644322 37999999999999998776 7889999999
Q ss_pred HHHHhCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC--------------cCC----CCCce
Q 004242 277 DKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIST--------------VDN----TAPWI 338 (766)
Q Consensus 277 ~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~~ 338 (766)
+||++.|++|||||||... +...+..++.+|.++|++||+||||+|..... ++. ..|++
T Consensus 429 ~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nV 505 (639)
T PTZ00262 429 DYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNV 505 (639)
T ss_pred HHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCE
Confidence 9999999999999999753 33456777889999999999999999864321 221 24677
Q ss_pred EEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhh
Q 004242 339 MTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTG 418 (766)
Q Consensus 339 itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~ 418 (766)
|+|||+..+..
T Consensus 506 IaVGAv~~d~~--------------------------------------------------------------------- 516 (639)
T PTZ00262 506 ITVSNLIKDKN--------------------------------------------------------------------- 516 (639)
T ss_pred EEEeeccCCCC---------------------------------------------------------------------
Confidence 88877532110
Q ss_pred hhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCC
Q 004242 419 KGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRG 498 (766)
Q Consensus 419 ~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~G 498 (766)
.....+.||++|
T Consensus 517 --------------------------------------------------------------------~~~s~s~~Snyg 528 (639)
T PTZ00262 517 --------------------------------------------------------------------NQYSLSPNSFYS 528 (639)
T ss_pred --------------------------------------------------------------------CcccccccccCC
Confidence 000244566666
Q ss_pred CCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHh
Q 004242 499 PSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMT 578 (766)
Q Consensus 499 p~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~ 578 (766)
.. ++||+|||++|+++++.+ .|..++|||||||||||+||||++++|+|++.+|+++|++
T Consensus 529 ~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~ 588 (639)
T PTZ00262 529 AK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKE 588 (639)
T ss_pred CC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 32 349999999999998765 8999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccccCCCCCCCCCCCccccc-CCccCccccCCCCcee
Q 004242 579 TAYTLNNRNSPIADVGGSSDTPLATAFAFG-SGHVDPESASDPGLIY 624 (766)
Q Consensus 579 TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~G~id~~~Al~~~lv~ 624 (766)
||.++.. .+..+| .|+||+++|++..+-+
T Consensus 589 TA~~l~~-----------------~~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 589 SIVQLPS-----------------LKNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred hCccCCC-----------------CCCccccCcEEcHHHHHHHHHhc
Confidence 9986521 111233 3899999999865543
No 3
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.2e-48 Score=437.14 Aligned_cols=416 Identities=22% Similarity=0.202 Sum_probs=243.0
Q ss_pred CCCCCcEEEEEecccCCCCCCCcC-CCCCCCCCCcccccccCCCcccCCCccccccccccccc-cccccCccccccCCCC
Q 004242 137 NLAKDVIVGVIDTGIWPEHIAFQD-TGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKG-YESVVGRINETVDYRS 214 (766)
Q Consensus 137 ~~G~gv~VaVIDtGid~~Hp~f~~-~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g-~~~~~~~~~~~~~~~~ 214 (766)
.+|+||+|||||||||+.||+|++ +|.+|+...|++....+..- ....+...+... -+.. .....+.+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~-~~~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAA-LASDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHH-HhcCCccccCc
Confidence 479999999999999999999996 57889999999987754321 111111111110 0000 00011122334
Q ss_pred CCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-----------CCHHHHHHHHHHHHhCC
Q 004242 215 PRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-----------CSSSDILAAIDKAVADG 283 (766)
Q Consensus 215 ~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~g 283 (766)
..|..||||||||||||+..++. .+.||||+|+|+++|++...+ +..++++.||+|+++..
T Consensus 74 ~~D~~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 67899999999999999965422 237999999999999998764 56889999999998753
Q ss_pred -----CcEEEeccCCCCCC-CcccHHHHHHHHHHhC-CCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEe
Q 004242 284 -----VDVLSLSLGGSSRP-YYRDTVAIASFGATQS-GVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKL 356 (766)
Q Consensus 284 -----~dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~ 356 (766)
+.|||||||...++ ...+.++.++..+..+ |++||+||||+|....+...... . ....-...+.+
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~----~----~~~~~~ie~~v 217 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV----P----NGETKTVELNV 217 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec----c----CCceEEEEEEE
Confidence 56999999987553 4556777777777765 99999999999986555433100 0 00001112233
Q ss_pred CCCceEeeeeeccCCC-CceeeeEEccCCCCC----CCccccCCCCCCCcccceEEEEecCCCch--hhhhHHHHhcCce
Q 004242 357 GNGHSFEGSSLYSGKG-SKQLPLVFGKTAGVS----GAEYCINGSLNRKLVKGKIVICQRGLNSR--TGKGEQVKLAGGA 429 (766)
Q Consensus 357 ~~g~~~~g~~~~~~~~-~~~~~lv~~~~~~~~----~~~~c~~~~~~~~~~~gkiv~~~~g~~~~--~~~~~~~~~~Ga~ 429 (766)
+.++.-...-+|.... .-.+.++.+...... ....... +.......++.+..+..... .+.....+..-..
T Consensus 218 ~~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~--~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~ 295 (455)
T cd07478 218 GEGEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSES--YKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKP 295 (455)
T ss_pred CCCCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCccee--EEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCc
Confidence 3332211122222222 111222222211000 0000000 00000011111111110000 0000000011112
Q ss_pred EEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEecee---Eec---CCCCccccccCCCCCCCC
Q 004242 430 GMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGT---VFG---NPAPVIASFSSRGPSLVG 503 (766)
Q Consensus 430 g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~---~~~---~~~~~~a~fSs~Gp~~~~ 503 (766)
|+|...-..........+.++|.-.+...+. .|+++.+..+++...... .++ .....++.||||||+.+
T Consensus 296 GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~~- 370 (455)
T cd07478 296 GIWKIRLTGVSITDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTRD- 370 (455)
T ss_pred cceEEEEEeccCCCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCCC-
Confidence 2222211111111111234555443332221 344444444433321111 122 23456999999999987
Q ss_pred CCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhC------CCCCHHHHHHHHH
Q 004242 504 HDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH------EDWSTAAIKSALM 577 (766)
Q Consensus 504 ~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~~s~~~ik~~L~ 577 (766)
+++||||+|||++|+++++.+ .|..++|||||||||||++|||+|++ |.|++++||++|+
T Consensus 371 -~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~ 436 (455)
T cd07478 371 -GRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLI 436 (455)
T ss_pred -CCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHH
Confidence 899999999999999999754 89999999999999999999999975 5679999999999
Q ss_pred hccccCCCCCCccccCCCCCCCCCCCcccccCC
Q 004242 578 TTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610 (766)
Q Consensus 578 ~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G 610 (766)
+||+++.. ..+++++||||
T Consensus 437 ~tA~~~~~--------------~~~pn~~~GyG 455 (455)
T cd07478 437 RGARRRPG--------------DEYPNPEWGYG 455 (455)
T ss_pred HhCccCCC--------------CCCCCCCCCCC
Confidence 99997631 35678899998
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.5e-48 Score=413.03 Aligned_cols=286 Identities=29% Similarity=0.340 Sum_probs=191.3
Q ss_pred CCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCC
Q 004242 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDA 218 (766)
Q Consensus 139 G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~ 218 (766)
|+||+|||||||||++||+|.++... .|+..++ +...+ ..+++..... ...+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d---------~~~~~------~~g~d~~~~~------~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFD---------YKAYL------LPGMDKWGGF------YVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccC---------cCCCc------cCCcCCCCCc------cCCCCCc
Confidence 79999999999999999999754210 1110000 00011 1222221111 1246789
Q ss_pred CCCchhHHHhhcccccccccccccc-CCcccccccCceEEEeeeecCCC-CCHHHHHH-------HHHHH--HhCCCcEE
Q 004242 219 QGHGTHTASTAAGNIVANANLFGLA-RGKAAGMRYTSRIAAYKACWSLG-CSSSDILA-------AIDKA--VADGVDVL 287 (766)
Q Consensus 219 ~gHGThVAgi~aG~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a--~~~g~dVI 287 (766)
+||||||||||||......+.+++. ...+.||||+|+|+.+|+++..+ .....+.. +++|+ .+++++||
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VI 135 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVI 135 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEE
Confidence 9999999999999864433322211 22458999999999999997544 33333333 34443 36799999
Q ss_pred EeccCCCCCCC-----cccHHHHHHHH-HHhCCCEEEEecCCCCCCCC--CcCCCCCceEEEecccCCcceeEEEEeCCC
Q 004242 288 SLSLGGSSRPY-----YRDTVAIASFG-ATQSGVFVSCSAGNSGPSIS--TVDNTAPWIMTVAASYTDRSFPAIVKLGNG 359 (766)
Q Consensus 288 n~SlG~~~~~~-----~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~~itVga~~~~~~~~~~~~~~~g 359 (766)
|||||...... ..+..+..... +.++|+++|+||||+|+... ..+..++++|+|||++.....+...
T Consensus 136 N~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~----- 210 (311)
T cd07497 136 SNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL----- 210 (311)
T ss_pred EecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-----
Confidence 99999854321 11222322222 24899999999999997643 4556889999999975321100000
Q ss_pred ceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC
Q 004242 360 HSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE 439 (766)
Q Consensus 360 ~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 439 (766)
..+ |
T Consensus 211 ------------------~~~-----------~----------------------------------------------- 214 (311)
T cd07497 211 ------------------FGY-----------L----------------------------------------------- 214 (311)
T ss_pred ------------------hcc-----------c-----------------------------------------------
Confidence 000 0
Q ss_pred cccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEE
Q 004242 440 GEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNIL 519 (766)
Q Consensus 440 ~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 519 (766)
....+.++.||||||+.+ +++||||+|||++|+
T Consensus 215 ---------------------------------------------~~~~~~~~~fSs~Gp~~~--g~~kPdv~ApG~~i~ 247 (311)
T cd07497 215 ---------------------------------------------PGGSGDVVSWSSRGPSIA--GDPKPDLAAIGAFAW 247 (311)
T ss_pred ---------------------------------------------cCCCCCccccccCCCCcc--cCCCCceeccCcceE
Confidence 012347899999999987 899999999999999
Q ss_pred eecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 004242 520 AAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHE------DWSTAAIKSALMTTA 580 (766)
Q Consensus 520 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~s~~~ik~~L~~TA 580 (766)
++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 248 s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 248 APGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 9876542111 111223799999999999999999999999986 689999999999997
No 5
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=3.3e-48 Score=407.23 Aligned_cols=270 Identities=26% Similarity=0.220 Sum_probs=203.2
Q ss_pred CCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCC
Q 004242 136 TNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSP 215 (766)
Q Consensus 136 ~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~ 215 (766)
+++|+||+|||||||||..||++.+...+.++..+ .+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-----------------------~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-----------------------NVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-----------------------eeccc-------------cCCC
Confidence 57899999999999999999865432111111111 11000 1134
Q ss_pred CCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004242 216 RDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSS 295 (766)
Q Consensus 216 ~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 295 (766)
.|..+||||||||| .||||+|+|+.+|+. ...+++++||+||++.|++|||||||...
T Consensus 45 ~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~ 102 (275)
T cd05562 45 SGGGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLN 102 (275)
T ss_pred CCCCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 67889999999999 399999999999874 35788999999999999999999999865
Q ss_pred CCC-cccHHHHHHHHHHhC-CCEEEEecCCCCCCCC-CcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCC
Q 004242 296 RPY-YRDTVAIASFGATQS-GVFVSCSAGNSGPSIS-TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKG 372 (766)
Q Consensus 296 ~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 372 (766)
.+. ....+..++.++.++ |++||+||||+|.... ..+...|++|+|||++.+.......
T Consensus 103 ~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------------ 164 (275)
T cd05562 103 EPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------------ 164 (275)
T ss_pred CCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------------
Confidence 543 334577778888887 9999999999998643 4567889999999976433210000
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccE
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPA 452 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~ 452 (766)
|.. .
T Consensus 165 -------------------~~~-------------------------------------------~-------------- 168 (275)
T cd05562 165 -------------------DPA-------------------------------------------P-------------- 168 (275)
T ss_pred -------------------ccc-------------------------------------------c--------------
Confidence 000 0
Q ss_pred EEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCC-cEEeecCCCCCCCCC
Q 004242 453 ATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGV-NILAAWPATTSPSML 531 (766)
Q Consensus 453 ~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~ 531 (766)
.......+.|+++||+.+ +.+||||+|||+ ++.+.+..+
T Consensus 169 --------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~~------ 208 (275)
T cd05562 169 --------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDGD------ 208 (275)
T ss_pred --------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccccCCCcCC------
Confidence 000013556788999876 789999999975 445544332
Q ss_pred CCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCc
Q 004242 532 KSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611 (766)
Q Consensus 532 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~ 611 (766)
.|..++|||||||||||++|||+|++|+|++++||++|++||+++. .+..+..||||+
T Consensus 209 -------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~---------------~~g~d~~~G~G~ 266 (275)
T cd05562 209 -------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG---------------EPGYDNASGSGL 266 (275)
T ss_pred -------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC---------------CCCCCCCcCcCc
Confidence 7899999999999999999999999999999999999999999763 234556899999
Q ss_pred cCccccCC
Q 004242 612 VDPESASD 619 (766)
Q Consensus 612 id~~~Al~ 619 (766)
||+.+|++
T Consensus 267 vda~~Av~ 274 (275)
T cd05562 267 VDADRAVA 274 (275)
T ss_pred ccHHHHhh
Confidence 99999986
No 6
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=6.2e-48 Score=402.31 Aligned_cols=242 Identities=27% Similarity=0.356 Sum_probs=197.1
Q ss_pred cccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCC
Q 004242 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDY 212 (766)
Q Consensus 133 ~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~ 212 (766)
|.++++|+||+|||||||||.+||+|.+.. ...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 899999999999999999999999996420 0011110 0
Q ss_pred CCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEecc
Q 004242 213 RSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSL 291 (766)
Q Consensus 213 ~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~Sl 291 (766)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..++++++|+||+++++|||||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~ 107 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSI 107 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeec
Confidence 1345778999999999999742 137999999999999998776 6677899999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC--cCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeecc
Q 004242 292 GGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIST--VDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYS 369 (766)
Q Consensus 292 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 369 (766)
|... +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||+..
T Consensus 108 G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~----------------------- 162 (255)
T cd07479 108 GGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF----------------------- 162 (255)
T ss_pred cCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-----------------------
Confidence 9753 233456666778889999999999999975433 4567789999998531
Q ss_pred CCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCcc
Q 004242 370 GKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHV 449 (766)
Q Consensus 370 ~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~ 449 (766)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCC----CCCcccCcEEeCCCcEEeecCCC
Q 004242 450 LPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLV----GHDVIKPDVTAPGVNILAAWPAT 525 (766)
Q Consensus 450 ~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~ 525 (766)
.+.++.|||+|++.. ..+++||||.|||.+|+++....
T Consensus 163 --------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~ 204 (255)
T cd07479 163 --------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKG 204 (255)
T ss_pred --------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCC
Confidence 126789999996521 13788999999999999876543
Q ss_pred CCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCC----CCCHHHHHHHHHhccccC
Q 004242 526 TSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHE----DWSTAAIKSALMTTAYTL 583 (766)
Q Consensus 526 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~~s~~~ik~~L~~TA~~~ 583 (766)
.|..++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 205 -------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 205 -------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred -------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 788999999999999999999999998 789999999999999975
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=3.6e-47 Score=416.22 Aligned_cols=312 Identities=29% Similarity=0.337 Sum_probs=234.0
Q ss_pred CccccCC-CCCCcEEEEEecccCCCCCCCcCCCCCCCCC-----CcccccccCCCcccCCCccccccccccccccccccC
Q 004242 131 GLWDATN-LAKDVIVGVIDTGIWPEHIAFQDTGMPPVPS-----RWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVG 204 (766)
Q Consensus 131 ~~~~~~~-~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~-----~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~ 204 (766)
.+|+++. +|+||+|||||||||++||+|.+....+... .++..+.. ....+++.+++.+++|.++.+..
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-- 75 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDDI-- 75 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCcc--
Confidence 3788887 9999999999999999999998764432211 12222211 12235677888878776542111
Q ss_pred ccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecC--CC-CCHHHHHHHHHHHHh
Q 004242 205 RINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWS--LG-CSSSDILAAIDKAVA 281 (766)
Q Consensus 205 ~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~~ 281 (766)
....+..+|||||||||+|...+..+ ...+.||||+|+|+.+|+++. .+ .....+++|++++++
T Consensus 76 --------~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~ 142 (346)
T cd07475 76 --------LDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVK 142 (346)
T ss_pred --------CCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Confidence 11457889999999999998654221 123489999999999999973 33 778889999999999
Q ss_pred CCCcEEEeccCCCCCC-CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC----------------cCCCCCceEEEecc
Q 004242 282 DGVDVLSLSLGGSSRP-YYRDTVAIASFGATQSGVFVSCSAGNSGPSIST----------------VDNTAPWIMTVAAS 344 (766)
Q Consensus 282 ~g~dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------~~~~~p~~itVga~ 344 (766)
.|++|||||||..... .....+..++.++.++|++||+||||+|..... .+...+++|+||+.
T Consensus 143 ~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~ 222 (346)
T cd07475 143 LGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASA 222 (346)
T ss_pred cCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeec
Confidence 9999999999987553 445667778888999999999999999865432 12244566666664
Q ss_pred cCCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHH
Q 004242 345 YTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVK 424 (766)
Q Consensus 345 ~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~ 424 (766)
.....
T Consensus 223 ~~~~~--------------------------------------------------------------------------- 227 (346)
T cd07475 223 NKKVP--------------------------------------------------------------------------- 227 (346)
T ss_pred ccccC---------------------------------------------------------------------------
Confidence 20000
Q ss_pred hcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCC
Q 004242 425 LAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGH 504 (766)
Q Consensus 425 ~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 504 (766)
......++.||+|||+..
T Consensus 228 ------------------------------------------------------------~~~~~~~~~~S~~G~~~~-- 245 (346)
T cd07475 228 ------------------------------------------------------------NPNGGQMSGFSSWGPTPD-- 245 (346)
T ss_pred ------------------------------------------------------------CCCCCccCCCcCCCCCcc--
Confidence 012347889999999986
Q ss_pred CcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhh----CCCCCHHH----HHHHH
Q 004242 505 DVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSV----HEDWSTAA----IKSAL 576 (766)
Q Consensus 505 ~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~s~~~----ik~~L 576 (766)
.++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+ ||++|
T Consensus 246 ~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l 312 (346)
T cd07475 246 LDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLL 312 (346)
T ss_pred cCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 899999999999999987654 7899999999999999999999998 78999877 78889
Q ss_pred HhccccCCCCCCccccCCCCCCCCCCCcccccCCccCccccCC
Q 004242 577 MTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 577 ~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 619 (766)
++||.+... ....+ ..+.+.++|+|+||+.+|++
T Consensus 313 ~~ta~~~~~------~~~~~---~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 313 MNTATPPLD------SEDTK---TYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HhcCCcccc------cCCCC---ccCCccccCcchhcHHHhhC
Confidence 999985221 11112 56778899999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-46 Score=404.65 Aligned_cols=293 Identities=34% Similarity=0.421 Sum_probs=227.6
Q ss_pred CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccc
Q 004242 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINET 209 (766)
Q Consensus 130 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 209 (766)
+.+|+.+++|+||+|||||+|||++||+|.++-.+ +.++.+.++|...... ..+..
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~---~~~~~ 58 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD---GTNPP 58 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc---cccCC
Confidence 56899999999999999999999999999764211 0122233333211000 00111
Q ss_pred cCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEE
Q 004242 210 VDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLS 288 (766)
Q Consensus 210 ~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn 288 (766)
.+...+.|..+|||||||||+|...+ .| +.||||+|+|+.+|+++..+ .....++++|++|++++++|||
T Consensus 59 ~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn 129 (312)
T cd07489 59 VPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVIT 129 (312)
T ss_pred CCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 22335677899999999999998643 22 37999999999999998666 6777789999999999999999
Q ss_pred eccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC---CcCCCCCceEEEecccCCcceeEEEEeCCCceEeee
Q 004242 289 LSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS---TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGS 365 (766)
Q Consensus 289 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~ 365 (766)
||||.... +..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 130 ~S~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------- 188 (312)
T cd07489 130 ASLGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------- 188 (312)
T ss_pred eCCCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------------
Confidence 99998654 23366777778888999999999999987543 3355778999998741
Q ss_pred eeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccc
Q 004242 366 SLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIA 445 (766)
Q Consensus 366 ~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 445 (766)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCC
Q 004242 446 DAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPAT 525 (766)
Q Consensus 446 ~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 525 (766)
+.||+|||+.+ ...||||+|||++++++++..
T Consensus 189 ----------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i~~~~~~~ 220 (312)
T cd07489 189 ----------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNILSTYPLA 220 (312)
T ss_pred ----------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCEEEeeeCC
Confidence 45799999987 889999999999999998654
Q ss_pred CCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhC-CCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCc
Q 004242 526 TSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH-EDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATA 604 (766)
Q Consensus 526 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~ 604 (766)
.. .|..++|||||||+|||++||++|++ |.+++.+||++|++||..+...+..-.. . ...+.
T Consensus 221 ~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~---~---~~~~~ 283 (312)
T cd07489 221 GG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL---P---DLAPV 283 (312)
T ss_pred CC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc---c---CCCCH
Confidence 11 58999999999999999999999999 9999999999999999987543211100 0 23566
Q ss_pred ccccCCccCccccCCCC
Q 004242 605 FAFGSGHVDPESASDPG 621 (766)
Q Consensus 605 ~~~G~G~id~~~Al~~~ 621 (766)
.++|+|+||+.+|++..
T Consensus 284 ~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 284 AQQGAGLVNAYKALYAT 300 (312)
T ss_pred hhcCcceeeHHHHhcCC
Confidence 79999999999999854
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=6.2e-46 Score=389.03 Aligned_cols=246 Identities=26% Similarity=0.293 Sum_probs=202.6
Q ss_pred ccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccC
Q 004242 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVD 211 (766)
Q Consensus 132 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 211 (766)
+|..+++|+||+|||||+|||++||+|.+..+.+.. .+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~--------------------------~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF--------------------------TYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc--------------------------Cccc-------------c
Confidence 799999999999999999999999999764211100 0000 0
Q ss_pred CCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC--CCHHHHHHHHHHHHhCCCcEEEe
Q 004242 212 YRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG--CSSSDILAAIDKAVADGVDVLSL 289 (766)
Q Consensus 212 ~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~ 289 (766)
.....|..+|||||||||+|+... .+.||||+|+|+.+|++...+ ++..++++||+||+++|++||||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~ 112 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINI 112 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 013456789999999999987421 247999999999999997654 45788999999999999999999
Q ss_pred ccCCCCC-CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeec
Q 004242 290 SLGGSSR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLY 368 (766)
Q Consensus 290 SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~ 368 (766)
|||.... ......+..++.+|.++|+++|+||||+|.....++...|++|+|||++.
T Consensus 113 S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------- 170 (267)
T cd07476 113 SGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD---------------------- 170 (267)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC----------------------
Confidence 9997543 23456678888889999999999999999887778888999999998631
Q ss_pred cCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCc
Q 004242 369 SGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAH 448 (766)
Q Consensus 369 ~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 448 (766)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCC
Q 004242 449 VLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSP 528 (766)
Q Consensus 449 ~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 528 (766)
.+.++.||+||+.. .||||+|||.+|+++.+.+
T Consensus 171 ---------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~--- 203 (267)
T cd07476 171 ---------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALGG--- 203 (267)
T ss_pred ---------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCCC---
Confidence 11457799999854 3789999999999998664
Q ss_pred CCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCC----CCHHHHHHHHHhccccCCC
Q 004242 529 SMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHED----WSTAAIKSALMTTAYTLNN 585 (766)
Q Consensus 529 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----~s~~~ik~~L~~TA~~~~~ 585 (766)
.|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 204 ----------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 204 ----------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred ----------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 7999999999999999999999999887 8999999999999998753
No 10
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=2.8e-45 Score=389.97 Aligned_cols=269 Identities=27% Similarity=0.334 Sum_probs=190.4
Q ss_pred CCcEEEEEecccCCCCCCCcCCCCCCC-CCCcccccccCCCcccCCCccccccccccccccccc---cCcc-c------c
Q 004242 140 KDVIVGVIDTGIWPEHIAFQDTGMPPV-PSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESV---VGRI-N------E 208 (766)
Q Consensus 140 ~gv~VaVIDtGid~~Hp~f~~~g~~~~-~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~---~~~~-~------~ 208 (766)
|+|+|||||||||++||+|++...... ....++.-+.+.+|.. . +++++|...+... ..+. + .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccccc
Confidence 689999999999999999987521100 0011111111222111 0 2233332211000 0000 0 0
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLS 288 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn 288 (766)
..+...+.+..+|||||||||+|...+... +.||||+|+|+.+|++........++++||+||++.|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 011234557899999999999998644322 379999999999999876557788999999999999999999
Q ss_pred eccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC---cC--------CCCCceEEEecccCCcceeEEEEeC
Q 004242 289 LSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIST---VD--------NTAPWIMTVAASYTDRSFPAIVKLG 357 (766)
Q Consensus 289 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~~itVga~~~~~~~~~~~~~~ 357 (766)
||||..... ..+.+..++..|.++|+++|+||||+|..... ++ ...+++|+||++....
T Consensus 147 ~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--------- 216 (291)
T cd07483 147 MSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--------- 216 (291)
T ss_pred eCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---------
Confidence 999975332 23456677778899999999999999864321 11 1345677777753211
Q ss_pred CCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCC
Q 004242 358 NGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSD 437 (766)
Q Consensus 358 ~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~ 437 (766)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCc
Q 004242 438 KEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVN 517 (766)
Q Consensus 438 ~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~ 517 (766)
....++.||++|+.. |||+|||.+
T Consensus 217 -------------------------------------------------~~~~~~~~Sn~G~~~-------vdi~APG~~ 240 (291)
T cd07483 217 -------------------------------------------------ENNLVANFSNYGKKN-------VDVFAPGER 240 (291)
T ss_pred -------------------------------------------------CcccccccCCCCCCc-------eEEEeCCCC
Confidence 011578899999753 499999999
Q ss_pred EEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 518 ILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 518 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
|+++.+.. .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 241 i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 241 IYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 99997654 7999999999999999999999999999999999999999984
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.8e-45 Score=389.07 Aligned_cols=289 Identities=41% Similarity=0.526 Sum_probs=215.2
Q ss_pred CCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccccccc-ccCccc-cccCCCCCC
Q 004242 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES-VVGRIN-ETVDYRSPR 216 (766)
Q Consensus 139 G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~-~~~~~~-~~~~~~~~~ 216 (766)
|+||+|||||+||+++||+|.+.. +.+.++...++|...... ...... .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997541 122334444444322100 000000 000112345
Q ss_pred CCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004242 217 DAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSS 295 (766)
Q Consensus 217 d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 295 (766)
|..+|||||||+|+|...+. ..+.|+||+|+|+.+|+++..+ +...+++++|+|+++++++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 68999999999999985442 2237999999999999998544 78889999999999999999999999764
Q ss_pred CCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc--CCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCC
Q 004242 296 RPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTV--DNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGS 373 (766)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 373 (766)
.. ..+.+..++..+.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 132 ~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------ 186 (295)
T cd07474 132 NG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------ 186 (295)
T ss_pred CC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------
Confidence 42 345677788889999999999999998765543 567899999999641100
Q ss_pred ceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEE
Q 004242 374 KQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAA 453 (766)
Q Consensus 374 ~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~ 453 (766)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCC-CCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCC
Q 004242 454 TLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSR-GPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLK 532 (766)
Q Consensus 454 ~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~-Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 532 (766)
........|+++ |+... ..+||||+|||.+|+++++..
T Consensus 187 --------------------------------~~~~~~~~~~s~~~~~~~--~~~kpdv~apG~~i~~~~~~~------- 225 (295)
T cd07474 187 --------------------------------AEADTVGPSSSRGPPTSD--SAIKPDIVAPGVDIMSTAPGS------- 225 (295)
T ss_pred --------------------------------CCCCceeccCCCCCCCCC--CCcCCCEECCcCceEeeccCC-------
Confidence 011133445555 45543 889999999999999998653
Q ss_pred CCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCcc
Q 004242 533 SDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHV 612 (766)
Q Consensus 533 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~i 612 (766)
...|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ...++..+|+|+|
T Consensus 226 ----~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-----------~~~~~~~~G~G~l 290 (295)
T cd07474 226 ----GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-----------VVYPVSRQGAGRV 290 (295)
T ss_pred ----CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-----------CcCChhccCccee
Confidence 1178999999999999999999999999999999999999999998754321 2234568999999
Q ss_pred Ccccc
Q 004242 613 DPESA 617 (766)
Q Consensus 613 d~~~A 617 (766)
|+.+|
T Consensus 291 ~~~~A 295 (295)
T cd07474 291 DALRA 295 (295)
T ss_pred ccccC
Confidence 99987
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-45 Score=378.52 Aligned_cols=234 Identities=29% Similarity=0.384 Sum_probs=191.7
Q ss_pred cEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCC
Q 004242 142 VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGH 221 (766)
Q Consensus 142 v~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gH 221 (766)
|+|||||||||++||+|.++. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999996541 11111110 024567899
Q ss_pred chhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC----CCHHHHHHHHHHHHhCCCcEEEeccCCCCCC
Q 004242 222 GTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG----CSSSDILAAIDKAVADGVDVLSLSLGGSSRP 297 (766)
Q Consensus 222 GThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 297 (766)
||||||||+|+..+. .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||...
T Consensus 39 GT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 999999999985321 5999999999999998642 67788999999999999999999999743
Q ss_pred CcccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCcee
Q 004242 298 YYRDTVAIASFGATQSGVFVSCSAGNSGPSI-STVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQL 376 (766)
Q Consensus 298 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 376 (766)
...+..++.++.++|+++|+||||+|... ..++...+++|+|++++.
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------------ 153 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------------ 153 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------------
Confidence 34567777789999999999999999764 356777899999998532
Q ss_pred eeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEc
Q 004242 377 PLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLG 456 (766)
Q Consensus 377 ~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~ 456 (766)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCcc
Q 004242 457 ASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDR 536 (766)
Q Consensus 457 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 536 (766)
.+.++.||++|+.. ||+|||.+|+++.+..
T Consensus 154 -------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~----------- 183 (239)
T cd05561 154 -------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPGG----------- 183 (239)
T ss_pred -------------------------------CCCccccCCCCCcc--------eEEccccceecccCCC-----------
Confidence 12567899999976 9999999999987554
Q ss_pred ccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCC
Q 004242 537 RVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610 (766)
Q Consensus 537 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G 610 (766)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++. .+..+..||||
T Consensus 184 --~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g---------------~~~~d~~~G~G 239 (239)
T cd05561 184 --GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG---------------PPGRDPVFGYG 239 (239)
T ss_pred --CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC---------------CCCcCCCcCCC
Confidence 799999999999999999999999999 999999999999999763 34455689988
No 13
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=3.3e-44 Score=377.54 Aligned_cols=247 Identities=34% Similarity=0.422 Sum_probs=195.5
Q ss_pred CCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCC
Q 004242 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDA 218 (766)
Q Consensus 139 G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~ 218 (766)
|+||+|||||+||+++||+|.+. |++... . ++...+.+.+. ......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~--~---------~~~~~~~~~d~----------~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG--G---------SADHDYNWFDP----------VGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC--C---------CcccccccccC----------CCCCCCCCCC
Confidence 89999999999999999999764 111000 0 00000001000 0112356788
Q ss_pred CCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh------------CCCcE
Q 004242 219 QGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA------------DGVDV 286 (766)
Q Consensus 219 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dV 286 (766)
.+|||||||||+|..... ...||||+|+|+.+|+++..++...+++++++++++ .+++|
T Consensus 52 ~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~I 122 (264)
T cd07481 52 NGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDV 122 (264)
T ss_pred CCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeE
Confidence 999999999999874322 126999999999999998877888899999999975 78999
Q ss_pred EEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC---CcCCCCCceEEEecccCCcceeEEEEeCCCceEe
Q 004242 287 LSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS---TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFE 363 (766)
Q Consensus 287 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~ 363 (766)
||||||.... ....+..++..+.++|++||+||||++.... .++...|++|+||+.+.
T Consensus 123 in~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~----------------- 183 (264)
T cd07481 123 INNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR----------------- 183 (264)
T ss_pred EEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-----------------
Confidence 9999998654 2344555666788999999999999986544 25677899999998542
Q ss_pred eeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccc
Q 004242 364 GSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL 443 (766)
Q Consensus 364 g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 443 (766)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecC
Q 004242 444 IADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWP 523 (766)
Q Consensus 444 ~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 523 (766)
.+.++.||++||... +++||||+|||.+|+++.+
T Consensus 184 --------------------------------------------~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i~s~~~ 217 (264)
T cd07481 184 --------------------------------------------NDVLADFSSRGPSTY--GRIKPDISAPGVNIRSAVP 217 (264)
T ss_pred --------------------------------------------CCCCccccCCCCCCC--CCcCceEEECCCCeEEecC
Confidence 126788999999986 8999999999999999987
Q ss_pred CCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 004242 524 ATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHED--WSTAAIKSALMTTAY 581 (766)
Q Consensus 524 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--~s~~~ik~~L~~TA~ 581 (766)
.. .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 218 ~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 218 GG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 64 7899999999999999999999999999 999999999999985
No 14
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-45 Score=378.36 Aligned_cols=341 Identities=25% Similarity=0.361 Sum_probs=258.9
Q ss_pred cCCCceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccc-----cccccCCC-CcEEEEec--c-eeeEEEEEeC
Q 004242 21 IGKQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQE-----DQEQETTP-PQILYAYE--N-AISGFSAKLS 91 (766)
Q Consensus 21 ~~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~-~~~~~~y~--~-~~~g~s~~l~ 91 (766)
...+.+|||.|++....+. ...|.+|+++..+.......... +..+.+.. ..+.+.|. . +|+|+.-.++
T Consensus 77 ~~~~~~YiV~f~~~~~q~~--~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft 154 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDASQQK--ISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFT 154 (501)
T ss_pred cccccceEEEeCCCccHHH--HHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccc
Confidence 3467999999995444333 56677777765543322111100 00111111 11444443 3 8889999999
Q ss_pred HHHHhhhccCCCeEEEEccccccccc-----CCCCcccCCccCCC-------cc----ccCCCCCCcEEEEEecccCCCC
Q 004242 92 TKQLKSLETVDGFLSATPDELLTLHT-----TYSPHFLGLESGIG-------LW----DATNLAKDVIVGVIDTGIWPEH 155 (766)
Q Consensus 92 ~~~~~~L~~~p~V~~v~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~~~~G~gv~VaVIDtGid~~H 155 (766)
.+-...++..|-++.++++....... .+....|||.++.. -| ..-..|+||...|+||||+.+|
T Consensus 155 ~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H 234 (501)
T KOG1153|consen 155 GESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEH 234 (501)
T ss_pred cceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccc
Confidence 99999999999999999988876654 34445677765411 11 1234799999999999999999
Q ss_pred CCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCCchhHHHhhcccccc
Q 004242 156 IAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVA 235 (766)
Q Consensus 156 p~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~ 235 (766)
|+|.++ ..| |.|. . +.....|++||||||||+|++..
T Consensus 235 ~dFegR------a~w-Ga~i-----~-----------------------------~~~~~~D~nGHGTH~AG~I~sKt-- 271 (501)
T KOG1153|consen 235 PDFEGR------AIW-GATI-----P-----------------------------PKDGDEDCNGHGTHVAGLIGSKT-- 271 (501)
T ss_pred cccccc------eec-cccc-----C-----------------------------CCCcccccCCCcceeeeeeeccc--
Confidence 999987 344 1111 0 00134789999999999999884
Q ss_pred ccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhC---------CCcEEEeccCCCCCCCcccHHHH
Q 004242 236 NANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVAD---------GVDVLSLSLGGSSRPYYRDTVAI 305 (766)
Q Consensus 236 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~SlG~~~~~~~~~~~~~ 305 (766)
.|||.+++|+++||++++| +..+++++++|++++. +..|.|||+|+... -++..
T Consensus 272 ------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~ 335 (501)
T KOG1153|consen 272 ------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNM 335 (501)
T ss_pred ------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHH
Confidence 6999999999999999988 8999999999999986 35699999999643 46777
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCCC-cCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCC
Q 004242 306 ASFGATQSGVFVSCSAGNSGPSIST-VDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTA 384 (766)
Q Consensus 306 a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~ 384 (766)
|+..|.+.|+.+++||||+..+.+. .|+++..+|||||++..
T Consensus 336 AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------------------------- 378 (501)
T KOG1153|consen 336 AVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------------------------- 378 (501)
T ss_pred HHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-------------------------------------
Confidence 7789999999999999999988874 45688999999998532
Q ss_pred CCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHH
Q 004242 385 GVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVK 464 (766)
Q Consensus 385 ~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~ 464 (766)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEee
Q 004242 465 KYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIIS 544 (766)
Q Consensus 465 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 544 (766)
+.+|.||+||++. ||.|||.+|+|+|.+... ...++|
T Consensus 379 ------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~ilS 415 (501)
T KOG1153|consen 379 ------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAILS 415 (501)
T ss_pred ------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chheee
Confidence 2799999999999 999999999999977522 568899
Q ss_pred cccchhhhhhhHHHHHHhhCCC---------CCHHHHHHHHHhcccc
Q 004242 545 GTSMSCPHVSGLAALLKSVHED---------WSTAAIKSALMTTAYT 582 (766)
Q Consensus 545 GTSmAaP~VAG~aALl~~~~P~---------~s~~~ik~~L~~TA~~ 582 (766)
|||||+|||||++|..++.+|. .+|.++|..+..-..+
T Consensus 416 GTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 416 GTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred cccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 9999999999999999999882 3788888877765553
No 15
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.9e-44 Score=375.06 Aligned_cols=243 Identities=29% Similarity=0.332 Sum_probs=194.9
Q ss_pred CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCC
Q 004242 141 DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQG 220 (766)
Q Consensus 141 gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~g 220 (766)
||+||||||||+++||+|.... ..++.++.+.++|.+.. . ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~------~------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNS------N------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCC------C------CCCCCCCC
Confidence 7999999999999999994220 01234566666664321 1 01357889
Q ss_pred CchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC---CCHHHHHHHHHHHHhCCCcEEEeccCCCCCC
Q 004242 221 HGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG---CSSSDILAAIDKAVADGVDVLSLSLGGSSRP 297 (766)
Q Consensus 221 HGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 297 (766)
|||||||||+|... +.+.||||+|+|+.+|+..... ....+++.|++|+.+.+++|||||||.....
T Consensus 49 HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 49 HGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred chhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 99999999999742 2247999999999999876433 3556788999999999999999999986542
Q ss_pred Cc------------ccHHHHHHHHHHhCCCEEEEecCCCCCC---CCCcCCCCCceEEEecccCCcceeEEEEeCCCceE
Q 004242 298 YY------------RDTVAIASFGATQSGVFVSCSAGNSGPS---ISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSF 362 (766)
Q Consensus 298 ~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~ 362 (766)
.. ...+..++..+.++|+++|+||||+|.. ...++...+++|+|||...
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~---------------- 182 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA---------------- 182 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------------
Confidence 21 2346677788999999999999999977 3456778899999998531
Q ss_pred eeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc
Q 004242 363 EGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE 442 (766)
Q Consensus 363 ~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 442 (766)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeec
Q 004242 443 LIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAW 522 (766)
Q Consensus 443 ~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 522 (766)
.+.++.||++||+.+ +++||||+|||.+|++..
T Consensus 183 ---------------------------------------------~~~~~~~S~~G~~~~--~~~~pdi~a~G~~~~~~~ 215 (261)
T cd07493 183 ---------------------------------------------NGNKASFSSIGPTAD--GRLKPDVMALGTGIYVIN 215 (261)
T ss_pred ---------------------------------------------CCCCCccCCcCCCCC--CCcCCceEecCCCeEEEc
Confidence 126788999999986 899999999999999865
Q ss_pred CCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 523 PATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 523 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 216 ~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 216 GDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 433 7899999999999999999999999999999999999999985
No 16
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.2e-43 Score=375.23 Aligned_cols=263 Identities=31% Similarity=0.352 Sum_probs=202.3
Q ss_pred CccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccccc
Q 004242 131 GLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETV 210 (766)
Q Consensus 131 ~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~ 210 (766)
.+|..+++|+||+|||||||||++||+|.++... . +...+...+...... ..
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~------------~~~~~~~~~~~~~~~---~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------D------------GYDPAVNGYNFVPNV---GD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------C------------CcccccCCccccccc---CC
Confidence 4799999999999999999999999999875110 0 000011111110000 00
Q ss_pred CCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEe
Q 004242 211 DYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSL 289 (766)
Q Consensus 211 ~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~ 289 (766)
......|..||||||||||+|...+.....|++ .+.|+||+|+|+.+|++...+ +...+++++|+||++.|++||||
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~ 130 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQN 130 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEe
Confidence 112346688999999999999865433222222 236799999999999998765 77888999999999999999999
Q ss_pred ccCCCCCCCcccHHHHHHHHHHhC-------CCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceE
Q 004242 290 SLGGSSRPYYRDTVAIASFGATQS-------GVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSF 362 (766)
Q Consensus 290 SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~ 362 (766)
|||......+...+..++..+.++ |+++|+||||++......+...+++|+||+++.+
T Consensus 131 S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~--------------- 195 (273)
T cd07485 131 SWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN--------------- 195 (273)
T ss_pred cCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC---------------
Confidence 999876444556677777788877 9999999999998877778888999999996421
Q ss_pred eeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc
Q 004242 363 EGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE 442 (766)
Q Consensus 363 ~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 442 (766)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCC-cEEee
Q 004242 443 LIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGV-NILAA 521 (766)
Q Consensus 443 ~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa 521 (766)
+.++.||++|+.. ||+|||. .|+++
T Consensus 196 ----------------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~ 221 (273)
T cd07485 196 ----------------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILST 221 (273)
T ss_pred ----------------------------------------------CCcCccccCCCce--------EEEeCCCCccccc
Confidence 2567899999876 9999999 89888
Q ss_pred cCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCC-CCHHHHHHHHHhc
Q 004242 522 WPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHED-WSTAAIKSALMTT 579 (766)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-~s~~~ik~~L~~T 579 (766)
.+.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 222 ~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 222 VPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 764311 11227899999999999999999999999999 9999999999986
No 17
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.6e-43 Score=383.85 Aligned_cols=220 Identities=26% Similarity=0.299 Sum_probs=165.6
Q ss_pred CCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC---CCHHHHHHHHHHHHhCCCcEEEeccC
Q 004242 216 RDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG---CSSSDILAAIDKAVADGVDVLSLSLG 292 (766)
Q Consensus 216 ~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG 292 (766)
.|+.+|||||||||||+..++ ..+.||||+|+|+++|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467899999999999985332 2247999999999999987542 23467999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHH-HHhCCCEEEEecCCCCCCCCCcC--C-CCCceEEEecccCCcceeEEEEeCCCceEeeeeec
Q 004242 293 GSSRPYYRDTVAIASFG-ATQSGVFVSCSAGNSGPSISTVD--N-TAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLY 368 (766)
Q Consensus 293 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~--~-~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~ 368 (766)
..........+..++.+ +.++|+++|+||||+|+..+++. . ..+++|+|||........+...+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~------------ 321 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL------------ 321 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc------------
Confidence 86542212233334433 44799999999999998766543 2 46899999996321110000000
Q ss_pred cCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCc
Q 004242 369 SGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAH 448 (766)
Q Consensus 369 ~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 448 (766)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCC
Q 004242 449 VLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSP 528 (766)
Q Consensus 449 ~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 528 (766)
.....+.++.||||||+.+ +.+||||+|||++|.+.-...
T Consensus 322 -----------------------------------~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~p~~~--- 361 (412)
T cd04857 322 -----------------------------------REKLPGNQYTWSSRGPTAD--GALGVSISAPGGAIASVPNWT--- 361 (412)
T ss_pred -----------------------------------ccccCCccccccccCCccc--CCcCceEEeCCCcEEEcccCC---
Confidence 0011236899999999997 999999999999998752111
Q ss_pred CCCCCCccccceEEeecccchhhhhhhHHHHHHh----hCCCCCHHHHHHHHHhccccC
Q 004242 529 SMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKS----VHEDWSTAAIKSALMTTAYTL 583 (766)
Q Consensus 529 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~ 583 (766)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 --------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 --------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred --------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 12789999999999999999999975 478999999999999999863
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.5e-43 Score=366.85 Aligned_cols=256 Identities=35% Similarity=0.450 Sum_probs=203.6
Q ss_pred CCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCC
Q 004242 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDA 218 (766)
Q Consensus 139 G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~ 218 (766)
|+||+|+|||+||+++||+|.+.... . +.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~-----------------------~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----F-----------------------ADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----c-----------------------ccccccc----------cCCCCCCCC
Confidence 89999999999999999999765211 0 0010000 011245677
Q ss_pred CCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhC----CCcEEEeccCC
Q 004242 219 QGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVAD----GVDVLSLSLGG 293 (766)
Q Consensus 219 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~SlG~ 293 (766)
.+|||||||||+|...+. .+.+.|+||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||.
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~ 116 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGA 116 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCC
Confidence 899999999999986442 12248999999999999998776 6788999999999998 99999999998
Q ss_pred CCC-CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC--CcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccC
Q 004242 294 SSR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS--TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG 370 (766)
Q Consensus 294 ~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 370 (766)
... ....+.+..++.++.++|+++|+||||++.... ..+...+++|+|||...+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------- 175 (264)
T cd07487 117 PPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------- 175 (264)
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------
Confidence 765 345677888888999999999999999998775 55667899999999653221
Q ss_pred CCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccc
Q 004242 371 KGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVL 450 (766)
Q Consensus 371 ~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 450 (766)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCC
Q 004242 451 PAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSM 530 (766)
Q Consensus 451 p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 530 (766)
....++.||++||+.+ +++||||+|||.+|+++.+.....
T Consensus 176 ------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~~~~-- 215 (264)
T cd07487 176 ------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGGNP-- 215 (264)
T ss_pred ------------------------------------CCccccccccCCCCCC--CCcCCCEEccccceEecccccccc--
Confidence 0015788999999987 899999999999999986543110
Q ss_pred CCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 531 LKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 531 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
.......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 216 --~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 216 --GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred --CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 1112237899999999999999999999999999999999999999985
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=2.5e-42 Score=361.70 Aligned_cols=232 Identities=36% Similarity=0.503 Sum_probs=193.5
Q ss_pred ccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccC
Q 004242 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVD 211 (766)
Q Consensus 132 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 211 (766)
.|..+++|+||+|||||+||+++||+|.++. ...+.|...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~---------------------------~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRA---------------------------IWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCe---------------------------eeeeecCCC-------------
Confidence 6778899999999999999999999997541 111122111
Q ss_pred CCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCC-----Cc
Q 004242 212 YRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADG-----VD 285 (766)
Q Consensus 212 ~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g-----~d 285 (766)
....|..+|||||||||+|.. .||||+|+|+.+|+++..+ ...++++++++|+++.. ++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ 121 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPA 121 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCe
Confidence 114678899999999999873 6999999999999998775 77788999999999874 89
Q ss_pred EEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcCCCCCceEEEecccCCcceeEEEEeCCCceEee
Q 004242 286 VLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSI-STVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEG 364 (766)
Q Consensus 286 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g 364 (766)
|||||||... ...+..++.++.++|+++|+||||+|... ...+...|++|+||+.+.+
T Consensus 122 iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------------- 180 (255)
T cd04077 122 VANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------------- 180 (255)
T ss_pred EEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------------
Confidence 9999999864 45566677789999999999999999766 3556788999999996421
Q ss_pred eeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccc
Q 004242 365 SSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELI 444 (766)
Q Consensus 365 ~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 444 (766)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCC
Q 004242 445 ADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPA 524 (766)
Q Consensus 445 ~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 524 (766)
+.++.||++||.. ||+|||.+|.++...
T Consensus 181 --------------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~ 208 (255)
T cd04077 181 --------------------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIG 208 (255)
T ss_pred --------------------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccC
Confidence 2568899999986 999999999998763
Q ss_pred CCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004242 525 TTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYT 582 (766)
Q Consensus 525 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~ 582 (766)
. ...|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 209 ~-----------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 209 S-----------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred C-----------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 2 1178999999999999999999999999999999999999999974
No 20
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.4e-42 Score=364.81 Aligned_cols=207 Identities=31% Similarity=0.419 Sum_probs=168.1
Q ss_pred CCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHH----------hCC
Q 004242 214 SPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAV----------ADG 283 (766)
Q Consensus 214 ~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g 283 (766)
...+..+|||||||||+|...++. | +.||||+|+|+.+|+++..+...+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~~---~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNGV---G-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCCC---C-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 456688999999999999865322 2 2799999999999999887778899999999998 457
Q ss_pred CcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcCCCCCceEEEecccCCcceeEEEEeCCCceE
Q 004242 284 VDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSI-STVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSF 362 (766)
Q Consensus 284 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~ 362 (766)
++|||||||..... ...+..++..+.++|++||+||||++... ..++...+++|+||+++.+
T Consensus 138 ~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 138 AKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred CeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 89999999986432 45677777889999999999999999876 5677788999999986421
Q ss_pred eeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc
Q 004242 363 EGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE 442 (766)
Q Consensus 363 ~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 442 (766)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeec
Q 004242 443 LIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAW 522 (766)
Q Consensus 443 ~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 522 (766)
+.++.||++|+.. ||+|||++|.++.
T Consensus 201 ----------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~ 226 (285)
T cd07496 201 ----------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDV 226 (285)
T ss_pred ----------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccC
Confidence 2678899999976 9999999999887
Q ss_pred CCCCCCC--CCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004242 523 PATTSPS--MLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTT 579 (766)
Q Consensus 523 ~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 579 (766)
.....+. ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 227 NGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 5432110 00111123378999999999999999999999999999999999999986
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=6.5e-42 Score=359.64 Aligned_cols=241 Identities=35% Similarity=0.434 Sum_probs=200.7
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
+..+|..+ +|+||+|||||+||+++||+|... ++...+++.++ +
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~------~--- 61 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN------D--- 61 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC------C---
Confidence 35789888 999999999999999999998432 22222222211 1
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVL 287 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVI 287 (766)
..+.|..+|||||||||++...+.. .+.|+||+|+|+.+|+++..+ +...+++++|+++++.+++||
T Consensus 62 ----~~~~d~~~HGT~vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~ii 129 (260)
T cd07484 62 ----SDAMDDNGHGTHVAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVI 129 (260)
T ss_pred ----CCCCCCCCcHHHHHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEE
Confidence 1356788999999999998753322 237999999999999998765 788899999999999999999
Q ss_pred EeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeee
Q 004242 288 SLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSL 367 (766)
Q Consensus 288 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~ 367 (766)
|||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 130 n~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------- 186 (260)
T cd07484 130 NLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------- 186 (260)
T ss_pred EecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------
Confidence 99999864 3456777777888999999999999999888889999999999986421
Q ss_pred ccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccC
Q 004242 368 YSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADA 447 (766)
Q Consensus 368 ~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 447 (766)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCC
Q 004242 448 HVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTS 527 (766)
Q Consensus 448 ~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 527 (766)
+.++.||++|+.. |++|||.+|+++.+..
T Consensus 187 -----------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~-- 215 (260)
T cd07484 187 -----------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPDG-- 215 (260)
T ss_pred -----------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCCC--
Confidence 2567899999876 9999999999987653
Q ss_pred CCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 004242 528 PSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTL 583 (766)
Q Consensus 528 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~ 583 (766)
.|..++|||||||+|||++||+++++| |++.+||++|++||+++
T Consensus 216 -----------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 -----------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred -----------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 789999999999999999999999999 99999999999999864
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-42 Score=369.63 Aligned_cols=263 Identities=25% Similarity=0.168 Sum_probs=186.3
Q ss_pred cEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCC
Q 004242 142 VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGH 221 (766)
Q Consensus 142 v~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gH 221 (766)
.+|||||||||.+||+|.+.- .....+... ...+.|..||
T Consensus 1 p~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gH 40 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGH 40 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCC
Confidence 379999999999999997541 000111100 0015688999
Q ss_pred chhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-----CCHHHHHHHHHHHHhCC---CcEEEeccCC
Q 004242 222 GTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-----CSSSDILAAIDKAVADG---VDVLSLSLGG 293 (766)
Q Consensus 222 GThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIn~SlG~ 293 (766)
||||||||++..... ....|+||+|+|+.+||++..+ ....++++||+|+++.+ ++|||||||.
T Consensus 41 GT~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~ 112 (291)
T cd04847 41 GTAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGS 112 (291)
T ss_pred hHHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCC
Confidence 999999999764331 1236999999999999998763 56778999999999853 4899999998
Q ss_pred CCCCCcc--cHHHHHHH-HHHhCCCEEEEecCCCCCCCCC------------cCCCCCceEEEecccCCcceeEEEEeCC
Q 004242 294 SSRPYYR--DTVAIASF-GATQSGVFVSCSAGNSGPSIST------------VDNTAPWIMTVAASYTDRSFPAIVKLGN 358 (766)
Q Consensus 294 ~~~~~~~--~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~~itVga~~~~~~~~~~~~~~~ 358 (766)
....... ..+..++. .+.++|++||+||||+|..... .+...+++|+|||.+.+......
T Consensus 113 ~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~----- 187 (291)
T cd04847 113 PLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR----- 187 (291)
T ss_pred CCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc-----
Confidence 7543211 23444443 3568999999999999987553 24567899999997643320000
Q ss_pred CceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCC
Q 004242 359 GHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDK 438 (766)
Q Consensus 359 g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~ 438 (766)
... +
T Consensus 188 ---------------------------------s~~---------~---------------------------------- 191 (291)
T cd04847 188 ---------------------------------ARY---------S---------------------------------- 191 (291)
T ss_pred ---------------------------------ccc---------c----------------------------------
Confidence 000 0
Q ss_pred CcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcE
Q 004242 439 EGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNI 518 (766)
Q Consensus 439 ~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 518 (766)
. ......+.||+|||... +.+||||+|||++|
T Consensus 192 ~----------------------------------------------~~~~~~~~fs~~Gp~~~--~~~KPDl~apG~~i 223 (291)
T cd04847 192 A----------------------------------------------VGPAPAGATTSSGPGSP--GPIKPDVVAFGGNL 223 (291)
T ss_pred c----------------------------------------------cccccCCCccccCCCCC--CCcCCcEEeeCCce
Confidence 0 00012344999999987 99999999999999
Q ss_pred EeecCCCCCC-----CCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 519 LAAWPATTSP-----SMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 519 ~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
.+..+..... ...........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 224 AYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 8865421100 00001112337999999999999999999999999999999999999999985
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-41 Score=356.25 Aligned_cols=253 Identities=33% Similarity=0.393 Sum_probs=186.7
Q ss_pred CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCC
Q 004242 141 DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQG 220 (766)
Q Consensus 141 gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~g 220 (766)
||+|||||+|||++||+|.+. +...+.|.... ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC---------CCCCCCCCCCCC
Confidence 799999999999999999754 11111221110 001124567889
Q ss_pred CchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCcc
Q 004242 221 HGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYR 300 (766)
Q Consensus 221 HGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 300 (766)
|||||||||+|+..+ +...||||+|+|+.+|++...++...+++++|+|+++.+++|||||||..... .
T Consensus 45 HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~ 113 (254)
T cd07490 45 HGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--E 113 (254)
T ss_pred cHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--C
Confidence 999999999998641 22369999999999999987778889999999999999999999999986543 4
Q ss_pred cHHHHHHHHHHh-CCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeE
Q 004242 301 DTVAIASFGATQ-SGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLV 379 (766)
Q Consensus 301 ~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv 379 (766)
+.+..++....+ +|++||+||||+|......+...+++|+|||++.+.......
T Consensus 114 ~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s------------------------- 168 (254)
T cd07490 114 DPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS------------------------- 168 (254)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc-------------------------
Confidence 455555544443 699999999999988777888899999999975332100000
Q ss_pred EccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhh
Q 004242 380 FGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASA 459 (766)
Q Consensus 380 ~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~ 459 (766)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccc
Q 004242 460 GKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVL 539 (766)
Q Consensus 460 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 539 (766)
.........++.+|... ....|||++|||.+|+++.... .....
T Consensus 169 --------------------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~---------~~~~~ 212 (254)
T cd07490 169 --------------------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA---------NGDGQ 212 (254)
T ss_pred --------------------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC---------CCCCC
Confidence 00001112223333332 2578999999999999965221 01127
Q ss_pred eEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 540 FNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 540 y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 213 ~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 213 YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999984
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-41 Score=361.69 Aligned_cols=249 Identities=22% Similarity=0.285 Sum_probs=182.9
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
...+|.++++|+||+||||||||+..|| |..++.. + +. .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCCC----------
Confidence 4679999999999999999999999888 7543110 0 00 00000
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLS 288 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn 288 (766)
......|+.|||||||+++ .||||+|+|+.+|++++ ..+++++||+||++++++|||
T Consensus 53 --~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn 109 (298)
T cd07494 53 --ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIIS 109 (298)
T ss_pred --CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEE
Confidence 0113567889999999876 59999999999999864 567789999999999999999
Q ss_pred eccCCCCCC----------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCC
Q 004242 289 LSLGGSSRP----------YYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGN 358 (766)
Q Consensus 289 ~SlG~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~ 358 (766)
||||..... .....+..++.+|.++|++||+||||++. .++...|++|+|||++.+..
T Consensus 110 ~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~--------- 177 (298)
T cd07494 110 NSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED--------- 177 (298)
T ss_pred eecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------
Confidence 999985431 12345777888899999999999999874 56889999999999753321
Q ss_pred CceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCC
Q 004242 359 GHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDK 438 (766)
Q Consensus 359 g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~ 438 (766)
+
T Consensus 178 g------------------------------------------------------------------------------- 178 (298)
T cd07494 178 G------------------------------------------------------------------------------- 178 (298)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccC--CCCCCCCCCcccCcE-----
Q 004242 439 EGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSS--RGPSLVGHDVIKPDV----- 511 (766)
Q Consensus 439 ~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs--~Gp~~~~~~~lKPDI----- 511 (766)
.....+++ +.... .+++.|||+
T Consensus 179 --------------------------------------------------~~~~~~~~~~~~s~~-~~g~~~pd~~~~~g 207 (298)
T cd07494 179 --------------------------------------------------ARRASSYASGFRSKI-YPGRQVPDVCGLVG 207 (298)
T ss_pred --------------------------------------------------cccccccccCccccc-CCCCccCccccccC
Confidence 00011111 11111 126677777
Q ss_pred -----------EeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcc
Q 004242 512 -----------TAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTA 580 (766)
Q Consensus 512 -----------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA 580 (766)
+|||..|.++..... .. ......|..++|||||||||||++|||+|++|.|++++||.+|++||
T Consensus 208 ~~~~~~~~~~~~APG~~i~~~~~~~~--~~---~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta 282 (298)
T cd07494 208 MLPHAAYLMLPVPPGSQLDRSCAAFP--DG---TPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTA 282 (298)
T ss_pred cCCcccccccccCCCcceeccccCCC--CC---CCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 479999876553210 00 01123799999999999999999999999999999999999999999
Q ss_pred ccCC
Q 004242 581 YTLN 584 (766)
Q Consensus 581 ~~~~ 584 (766)
+++.
T Consensus 283 ~~~~ 286 (298)
T cd07494 283 RDVT 286 (298)
T ss_pred cccC
Confidence 9763
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.4e-41 Score=361.80 Aligned_cols=277 Identities=30% Similarity=0.338 Sum_probs=199.2
Q ss_pred cCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCC
Q 004242 135 ATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRS 214 (766)
Q Consensus 135 ~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~ 214 (766)
++++|+||+|||||+|||++||+|.+.... +.. ..++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCc----cCcccEEEeeccCC----------------C
Confidence 578999999999999999999999764210 000 11222322211111 1
Q ss_pred CCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC--CCHHHHHHHHHHHHhCCCcEEEeccC
Q 004242 215 PRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG--CSSSDILAAIDKAVADGVDVLSLSLG 292 (766)
Q Consensus 215 ~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG 292 (766)
..|..+|||||||||+|...+.... ..+.|+||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G 124 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWG 124 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCC
Confidence 2378999999999999986543211 1247999999999999998765 56677889999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHH-h-CCCEEEEecCCCCCCCC---CcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeee
Q 004242 293 GSSRPYYRDTVAIASFGAT-Q-SGVFVSCSAGNSGPSIS---TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSL 367 (766)
Q Consensus 293 ~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~ 367 (766)
......+ .....++.++. + +|+++|+||||+|.... ..+...+++|+|||++......
T Consensus 125 ~~~~~~~-~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~---------------- 187 (293)
T cd04842 125 SPVNNGY-TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN---------------- 187 (293)
T ss_pred CCCcccc-chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc----------------
Confidence 8754311 22333333333 3 89999999999997765 5677889999999976433100
Q ss_pred ccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccC
Q 004242 368 YSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADA 447 (766)
Q Consensus 368 ~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 447 (766)
...|..
T Consensus 188 ---------------------~~~~~~----------------------------------------------------- 193 (293)
T cd04842 188 ---------------------GEGGLG----------------------------------------------------- 193 (293)
T ss_pred ---------------------cccccc-----------------------------------------------------
Confidence 000000
Q ss_pred ccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCC
Q 004242 448 HVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTS 527 (766)
Q Consensus 448 ~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 527 (766)
.......++.||++||+.. +++||||+|||++|+++.+...
T Consensus 194 ------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~~~~~- 234 (293)
T cd04842 194 ------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGTGILSARSGGG- 234 (293)
T ss_pred ------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCCCeEeccCCCC-
Confidence 0012236899999999986 8999999999999999975420
Q ss_pred CCCCCCCccccceEEeecccchhhhhhhHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 004242 528 PSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH-----E---DWSTAAIKSALMTTAY 581 (766)
Q Consensus 528 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P---~~s~~~ik~~L~~TA~ 581 (766)
.........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 235 ---~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 235 ---GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred ---CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 0011122378999999999999999999999985 4 6677899999999985
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.6e-41 Score=350.21 Aligned_cols=239 Identities=32% Similarity=0.405 Sum_probs=188.8
Q ss_pred cEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCC
Q 004242 142 VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGH 221 (766)
Q Consensus 142 v~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gH 221 (766)
|+|||||+||+++||+|.++. ++.. +++....+ ..+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~------~~~~~~~~-------~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVP------GWNFVSNN-------DPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccC------CccccCCC-------CCCCCCCCC
Confidence 789999999999999997630 0111 11111110 134678999
Q ss_pred chhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCC-Cc
Q 004242 222 GTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRP-YY 299 (766)
Q Consensus 222 GThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~-~~ 299 (766)
||||||||+|+..+.. .+.|+||+|+|+.+|+++..+ +...++.++++|+++.+++|||||||..... ..
T Consensus 43 GT~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~ 114 (242)
T cd07498 43 GTACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESI 114 (242)
T ss_pred HHHHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchH
Confidence 9999999999854322 237999999999999998765 6788899999999999999999999986542 34
Q ss_pred ccHHHHHHHHHHh-CCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeee
Q 004242 300 RDTVAIASFGATQ-SGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPL 378 (766)
Q Consensus 300 ~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~l 378 (766)
...+..++..+.+ +|+++|+||||+|......+...+++|+||+.+..
T Consensus 115 ~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------- 163 (242)
T cd07498 115 SSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------- 163 (242)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------------
Confidence 5667777777888 99999999999998877778889999999996421
Q ss_pred EEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHh
Q 004242 379 VFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGAS 458 (766)
Q Consensus 379 v~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~ 458 (766)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCcccc
Q 004242 459 AGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRV 538 (766)
Q Consensus 459 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 538 (766)
+.++.||++||.. |++|||.++.......... .+....
T Consensus 164 ------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~ 201 (242)
T cd07498 164 ------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGG 201 (242)
T ss_pred ------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCC
Confidence 2578899999986 9999999998885432110 111223
Q ss_pred ceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004242 539 LFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTT 579 (766)
Q Consensus 539 ~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 579 (766)
.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 202 ~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 202 GYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999976
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.6e-41 Score=357.41 Aligned_cols=264 Identities=30% Similarity=0.347 Sum_probs=185.4
Q ss_pred ccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCC
Q 004242 134 DATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYR 213 (766)
Q Consensus 134 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~ 213 (766)
..+++|+||+|||||+|||.+||+|.++.. ...+|..+ .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------C
Confidence 357899999999999999999999976411 11122111 1
Q ss_pred CCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccC
Q 004242 214 SPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLG 292 (766)
Q Consensus 214 ~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG 292 (766)
.+.|..+|||||||||+|+..+ +...||||+|+|+.+|++...+ ....++++||+||++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2467899999999999998543 2236999999999999997654 77778999999999999999999999
Q ss_pred CCCC----------CCcccHHHHHHHHH---------------HhCCCEEEEecCCCCCCCCCcC-----CCCCceEEEe
Q 004242 293 GSSR----------PYYRDTVAIASFGA---------------TQSGVFVSCSAGNSGPSISTVD-----NTAPWIMTVA 342 (766)
Q Consensus 293 ~~~~----------~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~~itVg 342 (766)
.... ......+......+ .++|++||+||||++....... ...+++++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~ 191 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVA 191 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEE
Confidence 8541 11112222222233 6899999999999986543221 1123444444
Q ss_pred cccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHH
Q 004242 343 ASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQ 422 (766)
Q Consensus 343 a~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~ 422 (766)
+....
T Consensus 192 ~V~~~--------------------------------------------------------------------------- 196 (297)
T cd07480 192 AVGAL--------------------------------------------------------------------------- 196 (297)
T ss_pred EECCC---------------------------------------------------------------------------
Confidence 42110
Q ss_pred HHhcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCC
Q 004242 423 VKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLV 502 (766)
Q Consensus 423 ~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~ 502 (766)
.....|+++.+.
T Consensus 197 ------------------------------------------------------------------~~~~~~~~~~~~-- 208 (297)
T cd07480 197 ------------------------------------------------------------------GRTGNFSAVANF-- 208 (297)
T ss_pred ------------------------------------------------------------------CCCCCccccCCC--
Confidence 012223333222
Q ss_pred CCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004242 503 GHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYT 582 (766)
Q Consensus 503 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~ 582 (766)
...||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|++++.+++.+|+.....
T Consensus 209 --~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~ 273 (297)
T cd07480 209 --SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTA 273 (297)
T ss_pred --CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhh
Confidence 345789999999999988654 89999999999999999999999999999998888888843322
Q ss_pred CCCCCCccccCCCCCCCCCCCcccccCCccCcc
Q 004242 583 LNNRNSPIADVGGSSDTPLATAFAFGSGHVDPE 615 (766)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~ 615 (766)
.... ... ......++|+|++++.
T Consensus 274 ~~~~-------~~~---~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 274 ARTT-------QFA---PGLDLPDRGVGLGLAP 296 (297)
T ss_pred cccC-------CCC---CCCChhhcCCceeecC
Confidence 1000 000 3456668999999875
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-40 Score=346.78 Aligned_cols=249 Identities=33% Similarity=0.463 Sum_probs=191.8
Q ss_pred CCcEEEEEecccCCCCCCCcCCCCCCCCCCcccc---cccCCCcccCCCccccccccccccccccccCccccccCCCCCC
Q 004242 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGG---CEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPR 216 (766)
Q Consensus 140 ~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~---~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~ 216 (766)
+||+|||||||||++||+|.++ .|... +..+... +....+. -..+|++.. ....+.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~-------~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDD----DGNGYVD---DIYGWNFVN-------NDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCccc----CCCCccc---CCCcccccC-------CCCCCC
Confidence 6899999999999999999875 23211 1111110 0000000 001222211 223567
Q ss_pred CCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004242 217 DAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSS 295 (766)
Q Consensus 217 d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 295 (766)
|..+|||||||||+|...+... +.|+||+|+|+.+|+++..+ ++..+++++|+++++.+++|||+|||...
T Consensus 61 d~~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~ 132 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG 132 (259)
T ss_pred CCCCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC
Confidence 8899999999999998644322 37999999999999998776 88889999999999999999999999864
Q ss_pred CCCcccHHHHHHHHHHhCCCEEEEecCCCCCCC---CCcCC--CCCceEEEecccCCcceeEEEEeCCCceEeeeeeccC
Q 004242 296 RPYYRDTVAIASFGATQSGVFVSCSAGNSGPSI---STVDN--TAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG 370 (766)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 370 (766)
. ...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 133 ~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~----------------------- 186 (259)
T cd07473 133 P---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN----------------------- 186 (259)
T ss_pred C---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-----------------------
Confidence 3 45677777889999999999999998762 23333 45889999986421
Q ss_pred CCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccc
Q 004242 371 KGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVL 450 (766)
Q Consensus 371 ~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 450 (766)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCC
Q 004242 451 PAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSM 530 (766)
Q Consensus 451 p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 530 (766)
+.++.||++||.. ||+.|||.++++..+..
T Consensus 187 --------------------------------------~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~~----- 216 (259)
T cd07473 187 --------------------------------------DALASFSNYGKKT-------VDLAAPGVDILSTSPGG----- 216 (259)
T ss_pred --------------------------------------CCcCcccCCCCCC-------cEEEeccCCeEeccCCC-----
Confidence 2566799999864 59999999999976544
Q ss_pred CCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 531 LKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 531 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
.|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 217 --------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 --------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred --------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 7899999999999999999999999999999999999999985
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.9e-41 Score=351.34 Aligned_cols=244 Identities=21% Similarity=0.233 Sum_probs=178.3
Q ss_pred CCccccCC-CCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 130 IGLWDATN-LAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 130 ~~~~~~~~-~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
..+|+... .|+||+|+|||+|||.+||+|.++... +..+
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccCC----------
Confidence 46787744 589999999999999999999765110 0000
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh----CCC
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA----DGV 284 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----~g~ 284 (766)
..+.|+.+|||||||||+|..+ .+| +.||||+|+|+.+|+++ .++++++|++|++ .++
T Consensus 45 ----~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v 106 (277)
T cd04843 45 ----LTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDV 106 (277)
T ss_pred ----CCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCE
Confidence 0145788999999999999731 112 27999999999999985 3456677777776 346
Q ss_pred cEEEeccCCCCCC------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc------------C-CCCCceEEEeccc
Q 004242 285 DVLSLSLGGSSRP------YYRDTVAIASFGATQSGVFVSCSAGNSGPSISTV------------D-NTAPWIMTVAASY 345 (766)
Q Consensus 285 dVIn~SlG~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~~itVga~~ 345 (766)
.+||||||..... .....+..++.+|.++|+++|+||||++...... + ...|++|+|||++
T Consensus 107 ~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~ 186 (277)
T cd04843 107 ILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGS 186 (277)
T ss_pred EEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEecc
Confidence 6899999986432 2234556677788899999999999998653211 1 1235788888864
Q ss_pred CCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHh
Q 004242 346 TDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKL 425 (766)
Q Consensus 346 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~ 425 (766)
.+.
T Consensus 187 ~~~----------------------------------------------------------------------------- 189 (277)
T cd04843 187 STT----------------------------------------------------------------------------- 189 (277)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 211
Q ss_pred cCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCC
Q 004242 426 AGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHD 505 (766)
Q Consensus 426 ~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 505 (766)
...++.||++|+..
T Consensus 190 --------------------------------------------------------------~~~~~~fSn~G~~v---- 203 (277)
T cd04843 190 --------------------------------------------------------------GHTRLAFSNYGSRV---- 203 (277)
T ss_pred --------------------------------------------------------------CCccccccCCCCcc----
Confidence 01378999999976
Q ss_pred cccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHh----h-CCCCCHHHHHHHHHhcc
Q 004242 506 VIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKS----V-HEDWSTAAIKSALMTTA 580 (766)
Q Consensus 506 ~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~s~~~ik~~L~~TA 580 (766)
||.|||++|+++.+..... ..+.....|..++|||||||||||++|||++ + +|+|+|+|||++|+.|+
T Consensus 204 ----di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~ 276 (277)
T cd04843 204 ----DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATG 276 (277)
T ss_pred ----ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcC
Confidence 9999999999998654211 0011111457899999999999999999975 3 49999999999999997
Q ss_pred c
Q 004242 581 Y 581 (766)
Q Consensus 581 ~ 581 (766)
+
T Consensus 277 ~ 277 (277)
T cd04843 277 T 277 (277)
T ss_pred C
Confidence 4
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=7.2e-40 Score=337.52 Aligned_cols=226 Identities=35% Similarity=0.504 Sum_probs=186.5
Q ss_pred CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCC
Q 004242 141 DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQG 220 (766)
Q Consensus 141 gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~g 220 (766)
||+|||||+||+++||+|.++ ++....|..... ..+.|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~~------------~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDDN------------NDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCCC------------CCCCCCCC
Confidence 799999999999999999754 111122221100 14567889
Q ss_pred CchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCc
Q 004242 221 HGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRPYY 299 (766)
Q Consensus 221 HGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 299 (766)
|||||||||++..... .+.|+||+|+|+.+|+++..+ ....+++++++++++.|++|||||||....
T Consensus 42 HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~--- 109 (229)
T cd07477 42 HGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD--- 109 (229)
T ss_pred CHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC---
Confidence 9999999999975332 237999999999999998776 677899999999999999999999998642
Q ss_pred ccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc--CCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceee
Q 004242 300 RDTVAIASFGATQSGVFVSCSAGNSGPSISTV--DNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLP 377 (766)
Q Consensus 300 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 377 (766)
...+..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 110 ~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------ 159 (229)
T cd07477 110 SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------ 159 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------------
Confidence 34456666788899999999999999876654 7888999999996422
Q ss_pred eEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcH
Q 004242 378 LVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGA 457 (766)
Q Consensus 378 lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~ 457 (766)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccc
Q 004242 458 SAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRR 537 (766)
Q Consensus 458 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 537 (766)
+.++.||++|+.. |+.|||.+|+++++..
T Consensus 160 -------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~------------ 188 (229)
T cd07477 160 -------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN------------ 188 (229)
T ss_pred -------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC------------
Confidence 1567899999975 9999999999998654
Q ss_pred cceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004242 538 VLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTT 579 (766)
Q Consensus 538 ~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 579 (766)
.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 189 -~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 -DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
No 31
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=4.5e-40 Score=352.12 Aligned_cols=253 Identities=30% Similarity=0.310 Sum_probs=178.4
Q ss_pred CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCC
Q 004242 141 DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQG 220 (766)
Q Consensus 141 gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~g 220 (766)
.|+|||||||||++||+|.++-.. ..+.+.....+.........+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 489999999999999999863110 000110000000000000111234567899
Q ss_pred CchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCC-CHHHHHHHHHHHHhCCCcEEEeccCCCCCCC-
Q 004242 221 HGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGC-SSSDILAAIDKAVADGVDVLSLSLGGSSRPY- 298 (766)
Q Consensus 221 HGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~- 298 (766)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ...+++++|+||++++++|||||||......
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~ 122 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGG 122 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCc
Confidence 99999999998732 149999999999999987764 8889999999999999999999999754321
Q ss_pred -------cccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------------CcCCCCCceEEEecccCCcc
Q 004242 299 -------YRDTVAIASFGATQSGVFVSCSAGNSGPSIS----------------------TVDNTAPWIMTVAASYTDRS 349 (766)
Q Consensus 299 -------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----------------------~~~~~~p~~itVga~~~~~~ 349 (766)
..+.+..++..+.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 123 ~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~--- 199 (294)
T cd07482 123 EYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDN--- 199 (294)
T ss_pred ccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCC---
Confidence 1234666677788999999999999986541 22334556666666431
Q ss_pred eeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCce
Q 004242 350 FPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGA 429 (766)
Q Consensus 350 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~ 429 (766)
T Consensus 200 -------------------------------------------------------------------------------- 199 (294)
T cd07482 200 -------------------------------------------------------------------------------- 199 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccC
Q 004242 430 GMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKP 509 (766)
Q Consensus 430 g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKP 509 (766)
.+.++.||++|+...
T Consensus 200 ----------------------------------------------------------~~~~~~~S~~g~~~~------- 214 (294)
T cd07482 200 ----------------------------------------------------------NGNLSSFSNYGNSRI------- 214 (294)
T ss_pred ----------------------------------------------------------CCCcCccccCCCCcc-------
Confidence 236778999987654
Q ss_pred cEEeCCCcEEeecCCCCC---CCC------CCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCH-HHHHHHHHhc
Q 004242 510 DVTAPGVNILAAWPATTS---PSM------LKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWST-AAIKSALMTT 579 (766)
Q Consensus 510 DI~APG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~-~~ik~~L~~T 579 (766)
|++|||+++....+.... ... .........|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 215 ~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 215 DLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred eEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 999999998533211100 000 001123347899999999999999999999999999999 9999999986
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-40 Score=342.46 Aligned_cols=156 Identities=23% Similarity=0.233 Sum_probs=119.3
Q ss_pred CCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCC
Q 004242 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDA 218 (766)
Q Consensus 139 G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~ 218 (766)
+++|+|||||||||++||+|.++ ++..+.|...... + + .......|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~--~--~--~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD--G--N--KVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC--c--c--cCCCCCCCC
Confidence 78999999999999999999764 1122222211000 0 0 001123568
Q ss_pred CCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-------CCHHHHHHHHHHHHhCCCcEEEecc
Q 004242 219 QGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-------CSSSDILAAIDKAVADGVDVLSLSL 291 (766)
Q Consensus 219 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIn~Sl 291 (766)
.||||||||||+ |+||+|+|+.+|+++..+ ++..++++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999994 789999999999997643 4567899999999999999999999
Q ss_pred CCCCCC---CcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-C--cCCCCCceEEEeccc
Q 004242 292 GGSSRP---YYRDTVAIASFGATQSGVFVSCSAGNSGPSIS-T--VDNTAPWIMTVAASY 345 (766)
Q Consensus 292 G~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~~itVga~~ 345 (766)
|..... .....+..++.+|.++|++||+||||+|.... . .+...|++|+|||++
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 986532 23567888888999999999999999997754 3 345678999999975
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.6e-40 Score=353.32 Aligned_cols=274 Identities=36% Similarity=0.487 Sum_probs=207.3
Q ss_pred EEEEEecccCCCCCCCc-CCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCC
Q 004242 143 IVGVIDTGIWPEHIAFQ-DTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGH 221 (766)
Q Consensus 143 ~VaVIDtGid~~Hp~f~-~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gH 221 (766)
+|||||||||++||+|. ++- ...++.+.+.|.++ . .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~~----------------------~~~~~~~~~~~~~~------~----~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF----------------------IWSKVPGGYNFVDG------N----PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE----------------------EEEEEEEEEETTTT------B----STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCCc----------------------ccccccceeeccCC------C----CCcCccccCCCc
Confidence 69999999999999997 320 01122222333222 1 012245678899
Q ss_pred chhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHH-hCCCcEEEeccCCCC--C-C
Q 004242 222 GTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAV-ADGVDVLSLSLGGSS--R-P 297 (766)
Q Consensus 222 GThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIn~SlG~~~--~-~ 297 (766)
||||||||+|.. . .+.. ...|+||+|+|+.+|+++..+....+++++|++++ +.+++|||||||... . +
T Consensus 49 GT~va~ii~~~~-~-~~~~-----~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~ 121 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-NNGP-----GINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDP 121 (282)
T ss_dssp HHHHHHHHHHTT-S-SSSS-----SETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHS
T ss_pred cchhhhhccccc-c-cccc-----ccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccc
Confidence 999999999996 2 2211 23799999999999998777777888999999999 899999999998832 2 2
Q ss_pred CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC---cCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCc
Q 004242 298 YYRDTVAIASFGATQSGVFVSCSAGNSGPSIST---VDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSK 374 (766)
Q Consensus 298 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 374 (766)
...+.+..+...+.++|+++|+||||+|..... .+...+++|+||+.+..
T Consensus 122 ~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~--------------------------- 174 (282)
T PF00082_consen 122 SYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN--------------------------- 174 (282)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT---------------------------
T ss_pred ccccccccccccccccCcceeeccccccccccccccccccccccccccccccc---------------------------
Confidence 333445666668889999999999999877653 55667889999985311
Q ss_pred eeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEE
Q 004242 375 QLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAAT 454 (766)
Q Consensus 375 ~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~ 454 (766)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCC
Q 004242 455 LGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSD 534 (766)
Q Consensus 455 v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 534 (766)
..++.||++|+... .+++||||+|||.+|+++++....
T Consensus 175 ----------------------------------~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~------- 212 (282)
T PF00082_consen 175 ----------------------------------GQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR------- 212 (282)
T ss_dssp ----------------------------------SSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES-------
T ss_pred ----------------------------------cccccccccccccc-cccccccccccccccccccccccc-------
Confidence 15688999976542 389999999999999988865410
Q ss_pred ccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCccCc
Q 004242 535 DRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDP 614 (766)
Q Consensus 535 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 614 (766)
..|..++|||||||+|||++|||+|++|+|++.+||.+|++||.++.... .......||||+||+
T Consensus 213 ---~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~------------~~~~~~~~G~G~in~ 277 (282)
T PF00082_consen 213 ---GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN------------GEGYDNSYGWGLINA 277 (282)
T ss_dssp ---EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT------------SSSSHHHHTTSBE-H
T ss_pred ---ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC------------CCCCCCCccCChhCH
Confidence 26889999999999999999999999999999999999999999875211 134566889999999
Q ss_pred cccCC
Q 004242 615 ESASD 619 (766)
Q Consensus 615 ~~Al~ 619 (766)
.+|++
T Consensus 278 ~~a~~ 282 (282)
T PF00082_consen 278 EKALN 282 (282)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99874
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.4e-39 Score=348.72 Aligned_cols=248 Identities=21% Similarity=0.196 Sum_probs=180.9
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
+..+|..+++|+||+|+|||||||++||+|.++... ...+.|..+ ..+
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~------~~~- 75 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDN------DPD- 75 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCC------CCC-
Confidence 467899999999999999999999999999765211 011112111 000
Q ss_pred ccCCCCC--CCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcE
Q 004242 209 TVDYRSP--RDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDV 286 (766)
Q Consensus 209 ~~~~~~~--~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dV 286 (766)
..+ .|..+|||||||||+|+..+.. ...||||+|+|+.+|+++.. .....+..++.++.+ .++|
T Consensus 76 ----~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~V 141 (297)
T cd04059 76 ----PTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDI 141 (297)
T ss_pred ----CCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceE
Confidence 012 2788999999999999853321 12799999999999998765 344455566666554 4599
Q ss_pred EEeccCCCCCCC----cccHHHHHHHHHHh-----CCCEEEEecCCCCCCCCC----cCCCCCceEEEecccCCcceeEE
Q 004242 287 LSLSLGGSSRPY----YRDTVAIASFGATQ-----SGVFVSCSAGNSGPSIST----VDNTAPWIMTVAASYTDRSFPAI 353 (766)
Q Consensus 287 In~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~~itVga~~~~~~~~~~ 353 (766)
||||||...... .......++.++.+ +|+++|+||||+|..... .....|++|+|||++.+
T Consensus 142 in~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~------ 215 (297)
T cd04059 142 YSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN------ 215 (297)
T ss_pred EECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC------
Confidence 999999764421 12233344444443 699999999999973221 22456889999986421
Q ss_pred EEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEE
Q 004242 354 VKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLL 433 (766)
Q Consensus 354 ~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~ 433 (766)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEe
Q 004242 434 LNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTA 513 (766)
Q Consensus 434 ~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~A 513 (766)
+.++.||++|+.. +++|
T Consensus 216 -------------------------------------------------------g~~~~~s~~g~~~--------~~~a 232 (297)
T cd04059 216 -------------------------------------------------------GVRASYSEVGSSV--------LASA 232 (297)
T ss_pred -------------------------------------------------------CCCcCCCCCCCcE--------EEEe
Confidence 2667899999987 8999
Q ss_pred CCCc-------EEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 514 PGVN-------ILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 514 PG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
||.. |+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 233 ~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 233 PSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred cCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 9987 66665431 0126788999999999999999999999999999999999999985
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.6e-39 Score=327.46 Aligned_cols=221 Identities=25% Similarity=0.288 Sum_probs=173.4
Q ss_pred CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCC
Q 004242 141 DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQG 220 (766)
Q Consensus 141 gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~g 220 (766)
||+|||||||||++||+|.++-.. .+.+..+ ... .+.....|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~-~~~-------~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDL-EII-------VVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------ccccccc-ccc-------cCCCCCCCCCC
Confidence 799999999999999999764110 0111000 000 01124567889
Q ss_pred CchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCc
Q 004242 221 HGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRPYY 299 (766)
Q Consensus 221 HGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 299 (766)
|||||||||++ .+|+++|+.+|+++..+ +...++++||+|+++++++|||||||..... .
T Consensus 46 HGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~ 106 (222)
T cd07492 46 HGTACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-D 106 (222)
T ss_pred cHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-c
Confidence 99999999974 46999999999998776 7888999999999999999999999986542 2
Q ss_pred ccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeE
Q 004242 300 RDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLV 379 (766)
Q Consensus 300 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv 379 (766)
...+..++.++.++|+++|+||||++.... .+...+.+|+|++...++
T Consensus 107 ~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------- 154 (222)
T cd07492 107 FPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------- 154 (222)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-------------------------------
Confidence 345667777888999999999999986543 367788999999853211
Q ss_pred EccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhh
Q 004242 380 FGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASA 459 (766)
Q Consensus 380 ~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~ 459 (766)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccc
Q 004242 460 GKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVL 539 (766)
Q Consensus 460 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 539 (766)
.. +.+++ ++|+.|||.+|+++.+.. .
T Consensus 155 ------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~-------------~ 180 (222)
T cd07492 155 ------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG-------------R 180 (222)
T ss_pred ------------------------------Cc---ccccC--------CceEEeCCCCeEeecCCC-------------C
Confidence 11 11223 349999999999998654 7
Q ss_pred eEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 540 FNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 540 y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 181 ~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 181 YLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=6.5e-38 Score=330.32 Aligned_cols=242 Identities=31% Similarity=0.356 Sum_probs=186.2
Q ss_pred CCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCC
Q 004242 138 LAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRD 217 (766)
Q Consensus 138 ~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d 217 (766)
+|+||+|||||+||+++||+|.+...... .+...... ......|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~~~---------~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVNDA---------GYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------cccccccc---------cCCCCCC
Confidence 59999999999999999999986521100 00000000 0113456
Q ss_pred CCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC--CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004242 218 AQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG--CSSSDILAAIDKAVADGVDVLSLSLGGSS 295 (766)
Q Consensus 218 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 295 (766)
..+|||||||||+|+..+ ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||...
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~ 115 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNP 115 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCC
Confidence 789999999999998543 2247999999999999998764 66777889999999999999999999876
Q ss_pred CC------------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc---------CCCCCceEEEecccCCcceeEEE
Q 004242 296 RP------------YYRDTVAIASFGATQSGVFVSCSAGNSGPSISTV---------DNTAPWIMTVAASYTDRSFPAIV 354 (766)
Q Consensus 296 ~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~~itVga~~~~~~~~~~~ 354 (766)
.. .....+......+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------ 189 (267)
T cd04848 116 AIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------ 189 (267)
T ss_pred cccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC------
Confidence 42 1445666777788899999999999998654332 23557899999865322
Q ss_pred EeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEe
Q 004242 355 KLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLL 434 (766)
Q Consensus 355 ~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~ 434 (766)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCcccc--ccCCCCCCCCCCcccCcEE
Q 004242 435 NSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIAS--FSSRGPSLVGHDVIKPDVT 512 (766)
Q Consensus 435 ~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSs~Gp~~~~~~~lKPDI~ 512 (766)
.... ||++|+... .++++
T Consensus 190 -------------------------------------------------------~~~~~~~s~~~~~~~-----~~~~~ 209 (267)
T cd04848 190 -------------------------------------------------------TIASYSYSNRCGVAA-----NWCLA 209 (267)
T ss_pred -------------------------------------------------------Ccccccccccchhhh-----hheee
Confidence 2233 488876542 34799
Q ss_pred eCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 513 APGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 513 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
|||.+|+++.+.. ...|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 210 apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 210 APGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred cCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999987631 117889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-36 Score=317.36 Aligned_cols=359 Identities=25% Similarity=0.332 Sum_probs=256.1
Q ss_pred CceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEecceeeEEEEEeC-----HHHHhhh
Q 004242 24 QTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLS-----TKQLKSL 98 (766)
Q Consensus 24 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~l~-----~~~~~~L 98 (766)
+.+|||.|+..... ..++..+++.|....-. .+.. -.....-..|-.-|.-+-++-. .-++++|
T Consensus 49 e~EyIv~F~~y~~A-----k~r~syi~skl~gS~Vt---nWri---ipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierL 117 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKPA-----KDRRSYIESKLRGSGVT---NWRI---IPRINPATKYPSDFGVLWIEESGKEAVVGEIERL 117 (1033)
T ss_pred cceeEEEecccccc-----hHHHHHHHHHhhcCCCC---ceeE---eeccCccccCCCccceEEEeccCccchhheeeeh
Confidence 57899999976542 34566666655432200 0000 0011112234334443333322 2347899
Q ss_pred ccCCCeEEEEccccccccc------------CC------------------CCcccCCc------------cCCCccccC
Q 004242 99 ETVDGFLSATPDELLTLHT------------TY------------------SPHFLGLE------------SGIGLWDAT 136 (766)
Q Consensus 99 ~~~p~V~~v~~~~~~~~~~------------~~------------------s~~~~g~~------------~~~~~~~~~ 136 (766)
..+|.|+.|.|.+.+..-. +. .+..|+-. ...-+|.+|
T Consensus 118 e~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~G 197 (1033)
T KOG4266|consen 118 EMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKG 197 (1033)
T ss_pred hcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhcc
Confidence 9999999999887654310 00 00011100 114589999
Q ss_pred CCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCC
Q 004242 137 NLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPR 216 (766)
Q Consensus 137 ~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~ 216 (766)
++|++|+|||.|||+.-+||-|+.--- -.+|. | . ..-.
T Consensus 198 yTGa~VkvAiFDTGl~~~HPHFrnvKE---RTNWT--------------N-----------------E--------~tLd 235 (1033)
T KOG4266|consen 198 YTGAKVKVAIFDTGLRADHPHFRNVKE---RTNWT--------------N-----------------E--------DTLD 235 (1033)
T ss_pred ccCCceEEEEeecccccCCccccchhh---hcCCc--------------C-----------------c--------cccc
Confidence 999999999999999999999974200 01121 0 0 1345
Q ss_pred CCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004242 217 DAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSS 295 (766)
Q Consensus 217 d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 295 (766)
|..||||.|||+|||.. ...|.||+++|+++|||-+.. .+.+..++|+.||+....||+|+|+|++.
T Consensus 236 D~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD 303 (1033)
T KOG4266|consen 236 DNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD 303 (1033)
T ss_pred cCcccceeEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc
Confidence 68899999999999873 236999999999999998766 88899999999999999999999999874
Q ss_pred CCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCC--CceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCC
Q 004242 296 RPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTA--PWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGS 373 (766)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~--p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 373 (766)
+.+.++-.-+.....++|++|.|+||+||-..+..+++ ..+|.||.-
T Consensus 304 --fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI----------------------------- 352 (1033)
T KOG4266|consen 304 --FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI----------------------------- 352 (1033)
T ss_pred --cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc-----------------------------
Confidence 44556655566788899999999999999888776644 344444432
Q ss_pred ceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEE
Q 004242 374 KQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAA 453 (766)
Q Consensus 374 ~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~ 453 (766)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCC----CCCcccCcEEeCCCcEEeecCCCCCCC
Q 004242 454 TLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLV----GHDVIKPDVTAPGVNILAAWPATTSPS 529 (766)
Q Consensus 454 ~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~ 529 (766)
...+.+|.|||||-+.. ..+++||||++-|.+|.......
T Consensus 353 --------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~---- 396 (1033)
T KOG4266|consen 353 --------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST---- 396 (1033)
T ss_pred --------------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc----
Confidence 12248999999996542 23899999999999998765433
Q ss_pred CCCCCccccceEEeecccchhhhhhhHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcc
Q 004242 530 MLKSDDRRVLFNIISGTSMSCPHVSGLAALLKS----VHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAF 605 (766)
Q Consensus 530 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (766)
+...+||||.|+|.|||+++||.+ +.--++|+.+|++|+..|.++. ...-+
T Consensus 397 ---------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLp----------------g~NMf 451 (1033)
T KOG4266|consen 397 ---------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLP----------------GPNMF 451 (1033)
T ss_pred ---------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCC----------------CCchh
Confidence 678899999999999999999966 3345699999999999999873 33457
Q ss_pred cccCCccCccccCC
Q 004242 606 AFGSGHVDPESASD 619 (766)
Q Consensus 606 ~~G~G~id~~~Al~ 619 (766)
.||+|++|..++++
T Consensus 452 EQGaGkldLL~syq 465 (1033)
T KOG4266|consen 452 EQGAGKLDLLESYQ 465 (1033)
T ss_pred hccCcchhHHHHHH
Confidence 89999999988776
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-32 Score=304.90 Aligned_cols=238 Identities=27% Similarity=0.386 Sum_probs=179.0
Q ss_pred CCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCC-C--CCHHHHHHHHHHHHhCCCcEEEeccCCC
Q 004242 218 AQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSL-G--CSSSDILAAIDKAVADGVDVLSLSLGGS 294 (766)
Q Consensus 218 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 294 (766)
...|||||||||+|+...... ..|+||+|+|+++++.+.. | .+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 356999999999999755322 3699999999999997643 2 5667789999999999999999999987
Q ss_pred CC-CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCC---CCCceEEEecccCCcceeEEEEeCCCceEeeeeeccC
Q 004242 295 SR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDN---TAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG 370 (766)
Q Consensus 295 ~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 370 (766)
.. +.....+...-..+.++|+++|+||||+||...+++. ....+|.|||--.....
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm-------------------- 440 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM-------------------- 440 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH--------------------
Confidence 65 4444445544444559999999999999998776653 44578888872111000
Q ss_pred CCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccc
Q 004242 371 KGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVL 450 (766)
Q Consensus 371 ~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 450 (766)
...|.
T Consensus 441 --~a~y~------------------------------------------------------------------------- 445 (1304)
T KOG1114|consen 441 --QAEYS------------------------------------------------------------------------- 445 (1304)
T ss_pred --Hhhhh-------------------------------------------------------------------------
Confidence 00000
Q ss_pred cEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCC
Q 004242 451 PAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSM 530 (766)
Q Consensus 451 p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 530 (766)
+++ .-...+..+|||||+.| |.+--.|+|||+.|.+- |...
T Consensus 446 ------------~~e--------------------~vp~~~YtWsSRgP~~D--G~lGVsi~APggAiAsV-P~~t---- 486 (1304)
T KOG1114|consen 446 ------------VRE--------------------PVPSNPYTWSSRGPCLD--GDLGVSISAPGGAIASV-PQYT---- 486 (1304)
T ss_pred ------------hhc--------------------cCCCCccccccCCCCcC--CCcceEEecCCccccCC-chhh----
Confidence 000 11225788999999998 88889999999988664 2110
Q ss_pred CCCCccccceEEeecccchhhhhhhHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccc
Q 004242 531 LKSDDRRVLFNIISGTSMSCPHVSGLAALLKS----VHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFA 606 (766)
Q Consensus 531 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (766)
...-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||+++.. -.+|.
T Consensus 487 ------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~----------------id~fa 544 (1304)
T KOG1114|consen 487 ------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD----------------IDSFA 544 (1304)
T ss_pred ------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc----------------cchhc
Confidence 11457899999999999999999965 46789999999999999998742 36789
Q ss_pred ccCCccCccccCC
Q 004242 607 FGSGHVDPESASD 619 (766)
Q Consensus 607 ~G~G~id~~~Al~ 619 (766)
+|.|++++.+|.+
T Consensus 545 qG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 545 QGQGMLQVDKAYE 557 (1304)
T ss_pred cCcceeehhHHHH
Confidence 9999999999976
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-32 Score=282.07 Aligned_cols=192 Identities=20% Similarity=0.156 Sum_probs=141.9
Q ss_pred CCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHH--HhCCCcEEEeccC
Q 004242 215 PRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKA--VADGVDVLSLSLG 292 (766)
Q Consensus 215 ~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIn~SlG 292 (766)
..|..+|||||||||||. .|++|+++|+..++.. ...+.+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999997 4778999998766522 1233466778888 6679999999999
Q ss_pred CCCCCC------cccHHHHHHHHHHhC-CCEEEEecCCCCCCC-----CCcCCCCCceEEEecccCCcceeEEEEeCCCc
Q 004242 293 GSSRPY------YRDTVAIASFGATQS-GVFVSCSAGNSGPSI-----STVDNTAPWIMTVAASYTDRSFPAIVKLGNGH 360 (766)
Q Consensus 293 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~ 360 (766)
...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||++....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------- 163 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------- 163 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----------
Confidence 865432 223456666666655 999999999999753 233557788999999642210
Q ss_pred eEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc
Q 004242 361 SFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG 440 (766)
Q Consensus 361 ~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 440 (766)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCC--CCCCCCCCcccCcEEeCCCcE
Q 004242 441 EELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSR--GPSLVGHDVIKPDVTAPGVNI 518 (766)
Q Consensus 441 ~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~--Gp~~~~~~~lKPDI~APG~~I 518 (766)
....+.||++ +|+.+ +..||||+|||++|
T Consensus 164 -----------------------------------------------~~~~s~~sn~~~~~~~~--~~~~~di~APG~~i 194 (247)
T cd07488 164 -----------------------------------------------RFFASDVSNAGSEINSY--GRRKVLIVAPGSNY 194 (247)
T ss_pred -----------------------------------------------cceecccccccCCCCCC--CCceeEEEEeeeeE
Confidence 0023456665 44443 78999999999999
Q ss_pred EeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCC------HHHHHHHHHhc
Q 004242 519 LAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWS------TAAIKSALMTT 579 (766)
Q Consensus 519 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s------~~~ik~~L~~T 579 (766)
++ +.. .|..++|||||||||||++|||++++|++. -.++|.+|+.|
T Consensus 195 ~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 195 NL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred EC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 98 222 688999999999999999999999987765 44566666655
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=6.8e-31 Score=271.29 Aligned_cols=196 Identities=37% Similarity=0.485 Sum_probs=157.7
Q ss_pred CCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHH-hCCCcEEEecc
Q 004242 214 SPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAV-ADGVDVLSLSL 291 (766)
Q Consensus 214 ~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~Sl 291 (766)
...+..+||||||++|++...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 345688999999999999853321 16999999999999987765 67888999999999 89999999999
Q ss_pred CCCCCCCcccHHHHHHHHHHhC-CCEEEEecCCCCCCCC---CcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeee
Q 004242 292 GGSSRPYYRDTVAIASFGATQS-GVFVSCSAGNSGPSIS---TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSL 367 (766)
Q Consensus 292 G~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~ 367 (766)
|..... ....+...+..+.++ |+++|+|+||++.... ..+...+++|+||+++.+.
T Consensus 110 g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------------- 169 (241)
T cd00306 110 GGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------------- 169 (241)
T ss_pred CCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-------------------
Confidence 987543 334566666677777 9999999999998776 4777899999999975322
Q ss_pred ccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccC
Q 004242 368 YSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADA 447 (766)
Q Consensus 368 ~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 447 (766)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccc-cccCCCCCCCCCCcccCcEEeCCCcEEeecCCCC
Q 004242 448 HVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIA-SFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATT 526 (766)
Q Consensus 448 ~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 526 (766)
... .++++| .|||+.|||.++......
T Consensus 170 ------------------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~-- 197 (241)
T cd00306 170 ------------------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT-- 197 (241)
T ss_pred ------------------------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC--
Confidence 111 334444 456999999999875111
Q ss_pred CCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004242 527 SPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTT 579 (766)
Q Consensus 527 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 579 (766)
....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 198 ---------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 198 ---------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred ---------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 11278999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-23 Score=240.55 Aligned_cols=250 Identities=34% Similarity=0.440 Sum_probs=186.7
Q ss_pred CCcccc--CCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccc
Q 004242 130 IGLWDA--TNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRIN 207 (766)
Q Consensus 130 ~~~~~~--~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~ 207 (766)
...|.. +++|+|++|+|||+||+..||+|.+.... .++|... ...
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~------~~~ 176 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDG------DPE 176 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccC------CCC
Confidence 567777 89999999999999999999999765210 0112211 100
Q ss_pred cccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCC-C-CCHHHHHHHHHHHHhCC--
Q 004242 208 ETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSL-G-CSSSDILAAIDKAVADG-- 283 (766)
Q Consensus 208 ~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g-- 283 (766)
....|..+|||||+|++++....+ .....|++|+++++.+|++... + ...++++++++++++.+
T Consensus 177 -----~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 244 (508)
T COG1404 177 -----PPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGP 244 (508)
T ss_pred -----CCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCC
Confidence 024688999999999999842111 1123799999999999999865 5 67778899999999999
Q ss_pred CcEEEeccCCCCCCCcccHHHHHHHHHHhCC-CEEEEecCCCCCCCC----CcCCCC--CceEEEecccCCcceeEEEEe
Q 004242 284 VDVLSLSLGGSSRPYYRDTVAIASFGATQSG-VFVSCSAGNSGPSIS----TVDNTA--PWIMTVAASYTDRSFPAIVKL 356 (766)
Q Consensus 284 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--p~~itVga~~~~~~~~~~~~~ 356 (766)
+++||||+|..........+..++..++..| +++|+|+||.+.... ..+... +.+++|++...
T Consensus 245 ~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------- 314 (508)
T COG1404 245 ADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------- 314 (508)
T ss_pred CcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------
Confidence 9999999998611233345555666777777 999999999987652 222222 36677766431
Q ss_pred CCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecC
Q 004242 357 GNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNS 436 (766)
Q Consensus 357 ~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 436 (766)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCC
Q 004242 437 DKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGV 516 (766)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 516 (766)
.+.++.||++|+.. ..+++|||.
T Consensus 315 ---------------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~ 337 (508)
T COG1404 315 ---------------------------------------------------SDTVASFSNDGSPT------GVDIAAPGV 337 (508)
T ss_pred ---------------------------------------------------CCccccccccCCCC------CcceeCCCc
Confidence 12678899999851 129999999
Q ss_pred cEEe-----ecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCC-CCCHHHHHHHHHhcccc
Q 004242 517 NILA-----AWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHE-DWSTAAIKSALMTTAYT 582 (766)
Q Consensus 517 ~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~s~~~ik~~L~~TA~~ 582 (766)
+|.+ .+++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 338 ~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 338 NILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred cccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 9988 444321 1499999999999999999999999999 89999999998888873
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.1e-22 Score=200.30 Aligned_cols=154 Identities=18% Similarity=0.273 Sum_probs=100.9
Q ss_pred CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccc
Q 004242 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINET 209 (766)
Q Consensus 130 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 209 (766)
..+|.+|++||+|++||+|.||||-|||+..+ |+. -. .|++..+++
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------yna-------ea------sydfssndp--- 196 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------YNA-------EA------SYDFSSNDP--- 196 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------cCc-------ee------ecccccCCC---
Confidence 57899999999999999999999999999643 111 01 222222221
Q ss_pred cCCCCCCC--CCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh-CCCcE
Q 004242 210 VDYRSPRD--AQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA-DGVDV 286 (766)
Q Consensus 210 ~~~~~~~d--~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dV 286 (766)
.++....| .+.|||.|||-+++...++ .+| .|||++.++..+|+++. .+..|+++|-..--+ ...+|
T Consensus 197 fpyprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq--pymtdlieansmghep~kihi 266 (629)
T KOG3526|consen 197 FPYPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHI 266 (629)
T ss_pred CCCCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEE
Confidence 12222223 5789999999988876543 444 39999999999999865 466677665322222 35689
Q ss_pred EEeccCCCCCC-Cc---ccHHHHHHHHHH-----hCCCEEEEecCCCCCC
Q 004242 287 LSLSLGGSSRP-YY---RDTVAIASFGAT-----QSGVFVSCSAGNSGPS 327 (766)
Q Consensus 287 In~SlG~~~~~-~~---~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~ 327 (766)
.+-|||..... .. .++..+++.+-+ ..|-++|.|.|..|..
T Consensus 267 ysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 267 YSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred EecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 99999986542 21 122233332333 2466899999987754
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.75 E-value=1.7e-17 Score=181.74 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=81.0
Q ss_pred ccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhC---CCcEEEeccCCCCCC---CcccHHHHHHHHHHhCCCEEEEe
Q 004242 247 AAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVAD---GVDVLSLSLGGSSRP---YYRDTVAIASFGATQSGVFVSCS 320 (766)
Q Consensus 247 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~A 320 (766)
+.||||+|+|+.|+++++. ..+++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+||+|
T Consensus 83 ~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaA 159 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAA 159 (361)
T ss_pred HHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4799999999999997543 45677888888887 999999999987543 23456777788899999999999
Q ss_pred cCCCCCCCC-----------CcCCCCCceEEEecccCCc
Q 004242 321 AGNSGPSIS-----------TVDNTAPWIMTVAASYTDR 348 (766)
Q Consensus 321 AGN~g~~~~-----------~~~~~~p~~itVga~~~~~ 348 (766)
+||+|.... .++...||+++||+++...
T Consensus 160 sGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 160 SGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999997653 3567899999999987654
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.32 E-value=1.8e-11 Score=113.72 Aligned_cols=122 Identities=51% Similarity=0.842 Sum_probs=100.6
Q ss_pred EEeCCCceEeeeeeccCCCCceeeeEEccC-CCCCCCccccCCCCCCCcccceEEEEecCCC-chhhhhHHHHhcCceEE
Q 004242 354 VKLGNGHSFEGSSLYSGKGSKQLPLVFGKT-AGVSGAEYCINGSLNRKLVKGKIVICQRGLN-SRTGKGEQVKLAGGAGM 431 (766)
Q Consensus 354 ~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~-~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~-~~~~~~~~~~~~Ga~g~ 431 (766)
+.++||+++.|++++++.. ..+++++... ........|.+..+...+++||||+|+++.+ .+.+|..+++++||.|+
T Consensus 2 i~LGng~~i~G~sl~~~~~-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gv 80 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL-KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGM 80 (126)
T ss_pred EEeCCCCEEEEEEccCCCC-CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEE
Confidence 6789999999999997665 5678877443 2344557899888888999999999999999 89999999999999999
Q ss_pred EEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEE
Q 004242 432 LLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTAS 476 (766)
Q Consensus 432 i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~ 476 (766)
|++++.............+|.+.|...+|+.|++|++++.+++++
T Consensus 81 I~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 81 ILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999887654333333567999999999999999999998776554
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.31 E-value=1.4e-11 Score=116.98 Aligned_cols=117 Identities=28% Similarity=0.309 Sum_probs=93.0
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccccc-Ccccc
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIAD-AHVLP 451 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~-~~~~p 451 (766)
....++||.+. |....+...+++|||+||+|+.|.+.+|..+++++||.|+|++++.......... ...+|
T Consensus 25 ~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP 96 (143)
T cd02133 25 GKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIP 96 (143)
T ss_pred CcEEEEEEccC--------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEe
Confidence 46788888654 3334455678999999999999999999999999999999999887543222221 35789
Q ss_pred EEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCC
Q 004242 452 AATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSL 501 (766)
Q Consensus 452 ~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~ 501 (766)
+++|+..+|+.|++|+++ ++++.+..+....+++.++.||||||..
T Consensus 97 ~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~~~~~p~va~fSsrgp~g 142 (143)
T cd02133 97 VVFISKEDGEALKAALES----SKKLTFNTKKEKATNPDLADFSSRGPWG 142 (143)
T ss_pred EEEecHHHHHHHHHHHhC----CCeEEEEeccccccCCccccccCcCCCC
Confidence 999999999999999988 5667666665556778899999999963
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.80 E-value=6.3e-09 Score=88.71 Aligned_cols=82 Identities=32% Similarity=0.560 Sum_probs=57.5
Q ss_pred eEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEecceeeEEEEEeCHHHHhhhccCCCeE
Q 004242 26 TYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFL 105 (766)
Q Consensus 26 ~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~ 105 (766)
+|||.|++...... ....+.+++.+++.+..... .....++.+.|+..||||+++++++++++|+++|+|+
T Consensus 1 ~YIV~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~ 71 (82)
T PF05922_consen 1 RYIVVFKDDASAAS-SFSSHKSWQASILKSALKSA--------SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVK 71 (82)
T ss_dssp EEEEEE-TTSTHHC-HHHHHHHHHH----HHHHTH---------TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEE
T ss_pred CEEEEECCCCCcch-hHHHHHHHHHHHHhhhhhhh--------cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeE
Confidence 69999999865332 13456666665544322100 1467899999999999999999999999999999999
Q ss_pred EEEcccccccc
Q 004242 106 SATPDELLTLH 116 (766)
Q Consensus 106 ~v~~~~~~~~~ 116 (766)
+|+|++.++++
T Consensus 72 ~Ve~D~~v~l~ 82 (82)
T PF05922_consen 72 SVEPDQVVSLH 82 (82)
T ss_dssp EEEEECEEEE-
T ss_pred EEEeCceEecC
Confidence 99999988764
No 47
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.76 E-value=6.9e-08 Score=88.98 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=77.0
Q ss_pred eeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcc---cccc--cCcc
Q 004242 375 QLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGE---ELIA--DAHV 449 (766)
Q Consensus 375 ~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~~~--~~~~ 449 (766)
.-++++... ...+.|.+..+...+++|||+||+|+.|.+.+|..+++++||.++|++|+..... .... ....
T Consensus 18 ~~~lv~~~~---~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~ 94 (122)
T cd04816 18 TAPLVPLDP---ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLK 94 (122)
T ss_pred EEEEEEcCC---CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCe
Confidence 446666432 2357899888877899999999999999999999999999999999998776321 1111 3456
Q ss_pred ccEEEEcHhhHHHHHHHHhcCCCCe
Q 004242 450 LPAATLGASAGKAVKKYVNSTKRPT 474 (766)
Q Consensus 450 ~p~~~v~~~~g~~l~~~~~~~~~~~ 474 (766)
+|+++|+..+|+.|++++..+.+.+
T Consensus 95 iP~~~Is~~~G~~l~~~l~~g~~v~ 119 (122)
T cd04816 95 VPVGVITKAAGAALRRRLGAGETLE 119 (122)
T ss_pred eeEEEEcHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999998776533
No 48
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.71 E-value=7.2e-08 Score=88.38 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=71.9
Q ss_pred CCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccc----ccCccccEEEEcHhhHH
Q 004242 386 VSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELI----ADAHVLPAATLGASAGK 461 (766)
Q Consensus 386 ~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~v~~~~g~ 461 (766)
....+.|.+.... .+++|||+||+|+.|.+.+|..+++++||.|+|++++......+. .....+|+++|+..+|+
T Consensus 24 ~~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~ 102 (118)
T cd04818 24 ASNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD 102 (118)
T ss_pred CCcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence 3456789887764 469999999999999999999999999999999998876522221 12357999999999999
Q ss_pred HHHHHHhcCCCCeE
Q 004242 462 AVKKYVNSTKRPTA 475 (766)
Q Consensus 462 ~l~~~~~~~~~~~~ 475 (766)
.|++|++.+...++
T Consensus 103 ~l~~~l~~g~~v~v 116 (118)
T cd04818 103 ALKAALAAGGTVTV 116 (118)
T ss_pred HHHHHHhcCCcEEE
Confidence 99999997765443
No 49
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.71 E-value=8.8e-08 Score=87.24 Aligned_cols=88 Identities=24% Similarity=0.303 Sum_probs=71.9
Q ss_pred CccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc-cccc-------ccCccccEEEEcHhhH
Q 004242 389 AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG-EELI-------ADAHVLPAATLGASAG 460 (766)
Q Consensus 389 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~~~-------~~~~~~p~~~v~~~~g 460 (766)
.+.|.+.. ...+++|+|+|++||.|.|.+|..+++++||.++|++|+.... .... .....+|+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 57798644 3568999999999999999999999999999999999876541 1111 1235799999999999
Q ss_pred HHHHHHHhcCCCCeEEE
Q 004242 461 KAVKKYVNSTKRPTASI 477 (766)
Q Consensus 461 ~~l~~~~~~~~~~~~~i 477 (766)
+.|++.+..+..+++.+
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988776654
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.71 E-value=7.1e-08 Score=90.32 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=73.5
Q ss_pred CCccccCCCC--CCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcc-ccc---ccCccccEEEEcHhhHH
Q 004242 388 GAEYCINGSL--NRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGE-ELI---ADAHVLPAATLGASAGK 461 (766)
Q Consensus 388 ~~~~c~~~~~--~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~-~~~---~~~~~~p~~~v~~~~g~ 461 (766)
..+.|.+... ++.++.|+|+|++||.|.|.+|..+++++||.++|++|+...+. .+. .....+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578988776 56789999999999999999999999999999999999886321 221 12347899999999999
Q ss_pred HHHHHHhcCCCCeEE
Q 004242 462 AVKKYVNSTKRPTAS 476 (766)
Q Consensus 462 ~l~~~~~~~~~~~~~ 476 (766)
.|++++..+.+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999988765554
No 51
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.68 E-value=1.1e-07 Score=86.20 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=73.6
Q ss_pred ceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcc----cccccCcc
Q 004242 374 KQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGE----ELIADAHV 449 (766)
Q Consensus 374 ~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~----~~~~~~~~ 449 (766)
..+|++.+. ....|....+.+.+++|+|+|++||.|.|.+|..+++++||.++|++|+..... ........
T Consensus 20 ~~~~~~~~~-----~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~ 94 (120)
T cd02129 20 TLLPLRNLT-----SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKID 94 (120)
T ss_pred cceeeecCC-----CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCc
Confidence 445666533 347899888888899999999999999999999999999999999999876311 11124467
Q ss_pred ccEEEEcHhhHHHHHHHHhc
Q 004242 450 LPAATLGASAGKAVKKYVNS 469 (766)
Q Consensus 450 ~p~~~v~~~~g~~l~~~~~~ 469 (766)
||+++|+..+|+.|.+.+..
T Consensus 95 IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 95 IPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred ccEEEEeHHHHHHHHHHhcc
Confidence 89999999999999988863
No 52
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.66 E-value=4.9e-08 Score=86.72 Aligned_cols=79 Identities=27% Similarity=0.379 Sum_probs=64.8
Q ss_pred CccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC----cccccccCccccEEEEcHhhHHHHH
Q 004242 389 AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE----GEELIADAHVLPAATLGASAGKAVK 464 (766)
Q Consensus 389 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~----~~~~~~~~~~~p~~~v~~~~g~~l~ 464 (766)
...|.+......+++||||||+||.|.+.+|..+++++||.|+|+++.... ..........+|+++|+..+|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 456777778889999999999999999999999999999999999992111 2333445678999999999999999
Q ss_pred HHH
Q 004242 465 KYV 467 (766)
Q Consensus 465 ~~~ 467 (766)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 986
No 53
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.59 E-value=6.1e-07 Score=83.10 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=74.7
Q ss_pred eeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc-ccccCccccEEE
Q 004242 376 LPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE-LIADAHVLPAAT 454 (766)
Q Consensus 376 ~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~~~~~~~~p~~~ 454 (766)
+|++..........+.|.+...+..+++|+|+|++|+.|.|.+|..+++++||.++|++|+...... ...+...+|.+.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~ 107 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV 107 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence 6666555444556789988766666899999999999999999999999999999999988754221 122333456665
Q ss_pred EcHhhHHHHHHHHhcCCCCe
Q 004242 455 LGASAGKAVKKYVNSTKRPT 474 (766)
Q Consensus 455 v~~~~g~~l~~~~~~~~~~~ 474 (766)
+ ..+|++|++.+..+...+
T Consensus 108 ~-~~~G~~l~~~l~~G~~vt 126 (129)
T cd02124 108 T-PEDGEAWIDALAAGSNVT 126 (129)
T ss_pred e-HHHHHHHHHHHhcCCeEE
Confidence 6 999999999998775443
No 54
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.59 E-value=2.3e-07 Score=85.85 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=68.3
Q ss_pred CccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc-----ccc--c-----ccCccccEEEEc
Q 004242 389 AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG-----EEL--I-----ADAHVLPAATLG 456 (766)
Q Consensus 389 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-----~~~--~-----~~~~~~p~~~v~ 456 (766)
.+.|.+... +.+++|||+|++||.|.|.+|..+++++||.++|++|+.... ..+ . .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467986654 567999999999999999999999999999999999876542 111 0 124579999999
Q ss_pred HhhHHHHHHHHhcCCCCe
Q 004242 457 ASAGKAVKKYVNSTKRPT 474 (766)
Q Consensus 457 ~~~g~~l~~~~~~~~~~~ 474 (766)
..+|+.|++.+..+...+
T Consensus 106 ~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHHHhCCceE
Confidence 999999999998765443
No 55
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.55 E-value=3.1e-07 Score=85.04 Aligned_cols=87 Identities=23% Similarity=0.293 Sum_probs=71.1
Q ss_pred CCccccCCC--CCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccc--c----ccCccccEEEEcHhh
Q 004242 388 GAEYCINGS--LNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL--I----ADAHVLPAATLGASA 459 (766)
Q Consensus 388 ~~~~c~~~~--~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~--~----~~~~~~p~~~v~~~~ 459 (766)
....|.... +...+++|||+||+|+.|.+.+|..+++++||.|+|++++....... . .....+|++.|+..+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345688877 67788999999999999999999999999999999999887632111 1 134579999999999
Q ss_pred HHHHHHHHhcCCCCe
Q 004242 460 GKAVKKYVNSTKRPT 474 (766)
Q Consensus 460 g~~l~~~~~~~~~~~ 474 (766)
|+.|++|+.++.+.+
T Consensus 109 g~~l~~~~~~~~~v~ 123 (126)
T cd00538 109 GEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHhcCCceE
Confidence 999999998865543
No 56
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.54 E-value=3.7e-07 Score=84.18 Aligned_cols=95 Identities=21% Similarity=0.226 Sum_probs=73.7
Q ss_pred eeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc----ccccCccc
Q 004242 375 QLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE----LIADAHVL 450 (766)
Q Consensus 375 ~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~----~~~~~~~~ 450 (766)
.-++++.. ...|.+..+ +.+++|||+|++|+.|.+.+|..+++++||.++|++|+...+.. ...+...+
T Consensus 23 ~g~lv~~~------~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~I 95 (122)
T cd02130 23 TGPLVVVP------NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYV 95 (122)
T ss_pred EEEEEEeC------CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEe
Confidence 34566643 346876554 35799999999999999999999999999999999988743211 11234579
Q ss_pred cEEEEcHhhHHHHHHHHhcCCCCeEE
Q 004242 451 PAATLGASAGKAVKKYVNSTKRPTAS 476 (766)
Q Consensus 451 p~~~v~~~~g~~l~~~~~~~~~~~~~ 476 (766)
|+++|+..+|+.|++.+.++++.+++
T Consensus 96 p~v~Is~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 96 PTVGISQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred eEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 99999999999999999988765543
No 57
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.5e-07 Score=100.01 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=96.8
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
+...|..+++|+++.|+|.|+|+...||+.... .-..+..++.. ... .
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~------~~~-~ 69 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNR------HDN-D 69 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeec------CCC-C
Confidence 467999999999999999999999999998643 01111122211 111 1
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh-CCCcEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA-DGVDVL 287 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVI 287 (766)
..+..+......|||-|++-.+...++. .. ..|+++++++..++++... .++...+...... .-.++-
T Consensus 70 p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--~C------~vg~~~~~~~~g~~~l~~~---v~~~~~~~~~~~~~~~~di~ 138 (431)
T KOG3525|consen 70 PEPRCDGTNENKHGTRCAGCVAARANNL--TC------GVGVAYNATIGGIRMLAGC---VSDAVEAPSLGFGPCHIDIY 138 (431)
T ss_pred cccccCCCCccccCCCCCcccccccCCC--cC------CCCcccCccccceeeeeee---cccceecccccCCCCCceee
Confidence 1111223346889999999999885222 11 2599999999999987432 1122222222222 346799
Q ss_pred EeccCCCCCC----CcccHHHHHHHH-----HHhCCCEEEEecCCCCCCCC
Q 004242 288 SLSLGGSSRP----YYRDTVAIASFG-----ATQSGVFVSCSAGNSGPSIS 329 (766)
Q Consensus 288 n~SlG~~~~~----~~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~~ 329 (766)
+.|||..... .-......+... ...+|-+.++|.||.|....
T Consensus 139 scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 139 SCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 9999986542 111112222222 33678899999999875543
No 58
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.1e-06 Score=104.79 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=57.8
Q ss_pred ccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCC-cEEEeccCCCCC-----CCcccHHHHHHHHHHhCCCEEEEe
Q 004242 247 AAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGV-DVLSLSLGGSSR-----PYYRDTVAIASFGATQSGVFVSCS 320 (766)
Q Consensus 247 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~~-----~~~~~~~~~a~~~a~~~Gi~vV~A 320 (766)
.+-+||+|+|..|-+ .. .....+..|+.+....=+ -+|-.||+.... +..-+.+..-...|..+|+.+++|
T Consensus 288 s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 367999999998866 21 122222233332222111 234456665322 113344555556788999999999
Q ss_pred cCCCCCCCC--------CcCCCCCceEEEec
Q 004242 321 AGNSGPSIS--------TVDNTAPWIMTVAA 343 (766)
Q Consensus 321 AGN~g~~~~--------~~~~~~p~~itVga 343 (766)
+|.+|.... ..+..+|++++||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 999986654 24568999999998
No 59
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.47 E-value=7e-07 Score=84.07 Aligned_cols=84 Identities=21% Similarity=0.389 Sum_probs=67.9
Q ss_pred CccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccc------ccCccccEEEEcHhhHHH
Q 004242 389 AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELI------ADAHVLPAATLGASAGKA 462 (766)
Q Consensus 389 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~------~~~~~~p~~~v~~~~g~~ 462 (766)
.+.|.+.. .+++|+|+|++||.|.|.+|..+++++||.++|++|+...-.... .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 47798754 479999999999999999999999999999999998765311111 113579999999999999
Q ss_pred HHHHHhcCCCCeE
Q 004242 463 VKKYVNSTKRPTA 475 (766)
Q Consensus 463 l~~~~~~~~~~~~ 475 (766)
|++.+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988765443
No 60
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.47 E-value=6.9e-07 Score=82.51 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=68.9
Q ss_pred CCccccCCCCC--CC----cccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccc-----------cccCccc
Q 004242 388 GAEYCINGSLN--RK----LVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL-----------IADAHVL 450 (766)
Q Consensus 388 ~~~~c~~~~~~--~~----~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-----------~~~~~~~ 450 (766)
..+.|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+....... ..+...+
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 35678876543 22 3788999999999999999999999999999999986542110 1123469
Q ss_pred cEEEEcHhhHHHHHHHHhcCCCCeE
Q 004242 451 PAATLGASAGKAVKKYVNSTKRPTA 475 (766)
Q Consensus 451 p~~~v~~~~g~~l~~~~~~~~~~~~ 475 (766)
|+++|+..+|+.|++.+..+...++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999998876544
No 61
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.42 E-value=9.3e-07 Score=80.36 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=66.4
Q ss_pred CCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc------ccccCccccEEEEcHhhH
Q 004242 387 SGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE------LIADAHVLPAATLGASAG 460 (766)
Q Consensus 387 ~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~------~~~~~~~~p~~~v~~~~g 460 (766)
...+.|.+. +..+++|||+|++||.|.|.+|..+++++||+++|++|+...... .......+|+++++..+|
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 345789765 568899999999999999999999999999999999987764211 112335799999999999
Q ss_pred HHHHHHHhcC
Q 004242 461 KAVKKYVNST 470 (766)
Q Consensus 461 ~~l~~~~~~~ 470 (766)
+.|+.++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9999987643
No 62
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.41 E-value=1.3e-06 Score=81.56 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=60.7
Q ss_pred CCCCcccceEEEEecCCCc-----hhhhhHHHHhcCceEEEEecCCCC-cc--ccccc---CccccEEEEcHhhHHHHHH
Q 004242 397 LNRKLVKGKIVICQRGLNS-----RTGKGEQVKLAGGAGMLLLNSDKE-GE--ELIAD---AHVLPAATLGASAGKAVKK 465 (766)
Q Consensus 397 ~~~~~~~gkiv~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~~~~~~-~~--~~~~~---~~~~p~~~v~~~~g~~l~~ 465 (766)
+...+++|||+|++||.|. |.+|.++++++||.++|++|+... +. ....+ ...+|+++++..+|+.|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 4456899999999999999 999999999999999999999732 21 11121 4589999999999999999
Q ss_pred HHhcC
Q 004242 466 YVNST 470 (766)
Q Consensus 466 ~~~~~ 470 (766)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 98543
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.37 E-value=1.6e-06 Score=82.94 Aligned_cols=84 Identities=21% Similarity=0.242 Sum_probs=69.4
Q ss_pred CccccCCCCCC---CcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc-ccc-----cCccccEEEEcHhh
Q 004242 389 AEYCINGSLNR---KLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE-LIA-----DAHVLPAATLGASA 459 (766)
Q Consensus 389 ~~~c~~~~~~~---~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~~~-----~~~~~p~~~v~~~~ 459 (766)
.+.|.+....+ .++.|+|+|++||.|.|.+|..+++++||.++|++|+...... ... ....+|+++++..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 56898776544 7899999999999999999999999999999999998654211 111 24589999999999
Q ss_pred HHHHHHHHhcCCC
Q 004242 460 GKAVKKYVNSTKR 472 (766)
Q Consensus 460 g~~l~~~~~~~~~ 472 (766)
|+.|+.++...+.
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
No 64
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.19 E-value=1.2e-05 Score=72.80 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=55.9
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeC--------CCce-----------EEEEeCCeEEEeecceEEEEEEEEEEecC---C
Q 004242 683 SLEYERSVTNVGTSYCTYAVKVEE--------PNGV-----------LVTITPPILSFQKIGEILSYKVTFVSLRG---A 740 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~~ty~~~v~~--------p~g~-----------~v~v~p~~~~~~~~~~~~~~~vt~~~~~~---~ 740 (766)
..+++++|+|.|+...+|+++... ..|. .+...|..+++++ |++++|+|+|+++.. .
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~p~~~~~~ 87 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITPPSGLDAS 87 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE--GGGHHT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEehhcCCcc
Confidence 689999999999999999998641 1111 5667788899988 999999999999652 2
Q ss_pred CCC-eEEEEEEEC-Cce-eEEeEEE
Q 004242 741 SNE-SFGSLTWVS-GKY-AVKSPIA 762 (766)
Q Consensus 741 ~~~-~~G~~~~~~-~~~-~v~~p~~ 762 (766)
+.. ++|+|.+++ ..+ .+++||+
T Consensus 88 ~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 88 NGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 244 999999998 454 8999985
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.10 E-value=4.4e-05 Score=70.83 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=69.9
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCC--chhhhhHHHHhcCceEEEEecCCCCcccc-----c-
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLN--SRTGKGEQVKLAGGAGMLLLNSDKEGEEL-----I- 444 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~--~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-----~- 444 (766)
....++||.+... ...+...+++|||++++++.+ .+.+|..+++++||.|+|++|+....... .
T Consensus 22 ~~~~~lV~~g~G~--------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGYGL--------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCCCC--------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 4567888876542 112335579999999999998 88999999999999999999866542211 0
Q ss_pred -ccCccccEEEEcHhhHHHHHHHHhcCC
Q 004242 445 -ADAHVLPAATLGASAGKAVKKYVNSTK 471 (766)
Q Consensus 445 -~~~~~~p~~~v~~~~g~~l~~~~~~~~ 471 (766)
.....+|++.|+.+||+.|++.++.+.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 223579999999999999999998743
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.41 E-value=0.00053 Score=64.19 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCCcccceEEEEecCCC------chhhh-------hHHHHhcCceEEEEecCCCC-------ccccc-ccCccccEEEEc
Q 004242 398 NRKLVKGKIVICQRGLN------SRTGK-------GEQVKLAGGAGMLLLNSDKE-------GEELI-ADAHVLPAATLG 456 (766)
Q Consensus 398 ~~~~~~gkiv~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~~~~~~-------~~~~~-~~~~~~p~~~v~ 456 (766)
...+++|||++++++.| .+..| ...++++||.++|+++.... |.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999999999 88888 68999999999999985422 22111 223569999999
Q ss_pred HhhHHHHHHHHhcCCCCe
Q 004242 457 ASAGKAVKKYVNSTKRPT 474 (766)
Q Consensus 457 ~~~g~~l~~~~~~~~~~~ 474 (766)
.++++.|...++.+...+
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 999999999998875443
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.85 E-value=0.0031 Score=61.54 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=66.0
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC-------------
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE------------- 439 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~------------- 439 (766)
...-++||.+.+...+.+.. .....+++|||+|++++.|.+.+|..+|+++||+|+|++++..+
T Consensus 28 ~v~g~lVyvn~G~~~Df~~L---~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~ 104 (183)
T cd02128 28 TVTGKLVYANYGRKKDFEDL---QSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGH 104 (183)
T ss_pred ceEEEEEEcCCCCHHHHHHH---HhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecc
Confidence 44667888654311111100 11245799999999999999999999999999999999987421
Q ss_pred -----cccc-----------c--c---cCccccEEEEcHhhHHHHHHHHhcC
Q 004242 440 -----GEEL-----------I--A---DAHVLPAATLGASAGKAVKKYVNST 470 (766)
Q Consensus 440 -----~~~~-----------~--~---~~~~~p~~~v~~~~g~~l~~~~~~~ 470 (766)
|+.+ . . .-..||++-|+..++..|++.+.-.
T Consensus 105 ~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 105 VHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred eeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 0000 0 0 1245889999999999999998654
No 68
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.64 E-value=0.0059 Score=66.50 Aligned_cols=79 Identities=24% Similarity=0.393 Sum_probs=66.0
Q ss_pred CCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC------cccccccCccccEEEEcHhhHHHHHHHHhcCCC
Q 004242 399 RKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE------GEELIADAHVLPAATLGASAGKAVKKYVNSTKR 472 (766)
Q Consensus 399 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~------~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~ 472 (766)
...+++|++++.||.|.|.+|...++++||.++++.|+..+ ++........||+.+++.++++.+..-..++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 56799999999999999999999999999999999998543 444455667899999999999999987666665
Q ss_pred CeEEE
Q 004242 473 PTASI 477 (766)
Q Consensus 473 ~~~~i 477 (766)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 54443
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.49 E-value=0.0062 Score=57.11 Aligned_cols=65 Identities=29% Similarity=0.217 Sum_probs=52.3
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCC------------------chhhhhHHHHhcCceEEEEe
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLN------------------SRTGKGEQVKLAGGAGMLLL 434 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~ 434 (766)
....|+|+.+.+.. ...|....+...|++||||++.++.| .+..|..+++++||.|+|++
T Consensus 19 ~~~aelVfvGyGi~--a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 19 IKDAPLVFVGYGIK--APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred ccceeeEEecCCcC--CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 34678888876532 24677777878899999999999877 46679999999999999999
Q ss_pred cCCCC
Q 004242 435 NSDKE 439 (766)
Q Consensus 435 ~~~~~ 439 (766)
++...
T Consensus 97 ~~~~~ 101 (142)
T cd04814 97 HELAP 101 (142)
T ss_pred eCCCc
Confidence 98664
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.33 E-value=0.014 Score=54.47 Aligned_cols=65 Identities=31% Similarity=0.310 Sum_probs=52.1
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCc------------hhhhhHHHHhcCceEEEEecCCCC
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNS------------RTGKGEQVKLAGGAGMLLLNSDKE 439 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~------------~~~~~~~~~~~Ga~g~i~~~~~~~ 439 (766)
...-++||.+.+.. ...|....+...+++|||||+.++.|. +..|..++.++||.|+|++++...
T Consensus 21 ~v~gelVfvGyG~~--~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 21 SVEAPLVFVGYGLV--APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred CceEeEEEecCCcC--ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 45678888776532 356777777788999999999998763 668999999999999999998654
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.30 E-value=0.029 Score=53.29 Aligned_cols=65 Identities=23% Similarity=0.213 Sum_probs=50.8
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCC------------------CchhhhhHHHHhcCceEEEEe
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGL------------------NSRTGKGEQVKLAGGAGMLLL 434 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~ 434 (766)
...-++||.+.+. ....|....+...+++|||||+.++. |.+..|..++.+.||.|+|++
T Consensus 19 ~vtg~lVfvGyGi--~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~ 96 (151)
T cd04822 19 AVTAPVVFAGYGI--TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVV 96 (151)
T ss_pred CceEeEEEecCCc--CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEE
Confidence 3456888877542 23557666677789999999998773 566789999999999999999
Q ss_pred cCCCC
Q 004242 435 NSDKE 439 (766)
Q Consensus 435 ~~~~~ 439 (766)
++...
T Consensus 97 ~d~~~ 101 (151)
T cd04822 97 NGPNS 101 (151)
T ss_pred eCCcc
Confidence 98755
No 72
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=95.50 E-value=0.27 Score=43.36 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=61.5
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEecCCCCCeEEEEEEECCceeEEeEE
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNESFGSLTWVSGKYAVKSPI 761 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~~~v~~p~ 761 (766)
...+.+++|+|.|.....|++.......-.++++|..=.+.+ |++.++.|+|.... +.+.+.+.|...-.+..+.+|+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~-~~g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTK-PLGDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCC-CCceEEEEEEEEECCeEEEEEE
Confidence 477788999999999999998765433456777877666666 99999999999643 2334788888877667788887
Q ss_pred EEE
Q 004242 762 AVT 764 (766)
Q Consensus 762 ~v~ 764 (766)
-+.
T Consensus 98 ~a~ 100 (102)
T PF14874_consen 98 KAE 100 (102)
T ss_pred EEE
Confidence 654
No 73
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.43 E-value=0.018 Score=54.04 Aligned_cols=68 Identities=24% Similarity=0.186 Sum_probs=49.8
Q ss_pred ccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC
Q 004242 368 YSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE 439 (766)
Q Consensus 368 ~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 439 (766)
|+.+.+..-++||..-+...+.+.-.. ..+++|||+|++.|...+-.|..+|++.||.|+|++.+..+
T Consensus 9 YS~sG~Vtg~~VYvNyG~~eDf~~L~~----~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 9 YSAKGTLQAEVVDVQYGSVEDLRRIRD----NMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred eCCCCceEEEEEEecCCCHHHHHHHHh----CCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 444445567788866543222221111 26799999999999999999999999999999999988654
No 74
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.13 E-value=0.043 Score=55.52 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=47.2
Q ss_pred CCceeeeEEccCCCCCCCccccCCCC-----CCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC
Q 004242 372 GSKQLPLVFGKTAGVSGAEYCINGSL-----NRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE 439 (766)
Q Consensus 372 ~~~~~~lv~~~~~~~~~~~~c~~~~~-----~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 439 (766)
.....++||.+.. ....+ ...+++|||||+.++.+.+.+|..+|+++||+|+|++++..+
T Consensus 43 g~v~g~lVyvnyG--------~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 43 GNVTAELVYANYG--------SPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCceEEEEEcCCC--------cHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 3456788887643 22222 246899999999999998889999999999999999987654
No 75
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.67 E-value=0.041 Score=51.04 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=70.1
Q ss_pred CCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccc----------cccCccccEEEEc
Q 004242 387 SGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL----------IADAHVLPAATLG 456 (766)
Q Consensus 387 ~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~----------~~~~~~~p~~~v~ 456 (766)
+...+|.+.. +.....+.+.+++||+|+|..|..+++++||..+|+.++.....++ ..+...+|++.+-
T Consensus 72 dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 72 DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 4567787643 3456788999999999999999999999999999998877664333 1245789999999
Q ss_pred HhhHHHHHHHHhcCCCCeEEEEe
Q 004242 457 ASAGKAVKKYVNSTKRPTASIVF 479 (766)
Q Consensus 457 ~~~g~~l~~~~~~~~~~~~~i~~ 479 (766)
..+|..++.-++.-..+-+.|..
T Consensus 151 g~~Gy~ir~sL~r~~r~ha~i~I 173 (193)
T KOG3920|consen 151 GVTGYYIRVSLKRYFRDHAKIDI 173 (193)
T ss_pred ccceEEEehhHHHhCCccEEEec
Confidence 99998887777665555444433
No 76
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.12 E-value=0.27 Score=41.11 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=37.2
Q ss_pred eeEEEEEEEEecCCCC-eEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEec
Q 004242 682 MSLEYERSVTNVGTSY-CTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLR 738 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~-~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (766)
.+.+++.+|+|.|... ...++++..|.|-.+...|..+.--+.|++++++++|++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 5889999999999755 44788889999999888888775445599999999999865
No 77
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.74 E-value=0.97 Score=41.12 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=41.5
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEecCC
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGA 740 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~ 740 (766)
-.-.++..|+|....+.+|++++..++|+.+......+++.+ |++.++.|.+.++...
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEEECHHH
Confidence 455678999999999999999999988999966558888877 9999999999997644
No 78
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.3 Score=52.39 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=63.4
Q ss_pred ccccCCCCC---CCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccc----ccCccccEEEEcHhhHHH
Q 004242 390 EYCINGSLN---RKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELI----ADAHVLPAATLGASAGKA 462 (766)
Q Consensus 390 ~~c~~~~~~---~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~v~~~~g~~ 462 (766)
++|.+...- .......++++.||+|.|.+|..+|+.+|.+++|++|+........ .....++..+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 567654431 3456667999999999999999999999999999999877754333 244678999999999999
Q ss_pred HHHHHhcC
Q 004242 463 VKKYVNST 470 (766)
Q Consensus 463 l~~~~~~~ 470 (766)
|++|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99985443
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=91.19 E-value=3.6 Score=37.69 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=53.9
Q ss_pred ceeeeccCCccceeEEEEEEEEecCCCCeEEEEEEe----CCCce--------------EEE-----EeCCeEEEeecce
Q 004242 670 SFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVE----EPNGV--------------LVT-----ITPPILSFQKIGE 726 (766)
Q Consensus 670 s~~~~~~~~~~~~~~~~~rtvtn~g~~~~ty~~~v~----~p~g~--------------~v~-----v~p~~~~~~~~~~ 726 (766)
.|-+....+ .+.+++++|+|.++.+.+|.+.+. ...|+ ... -.|..+++++ ++
T Consensus 18 YFdL~~~P~---q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~-~~ 93 (121)
T PF06030_consen 18 YFDLKVKPG---QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPP-NE 93 (121)
T ss_pred eEEEEeCCC---CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECC-CC
Confidence 454444443 589999999999999999999862 22221 000 1245578877 99
Q ss_pred EEEEEEEEEEecCCCCC-eEEEEEEE
Q 004242 727 ILSYKVTFVSLRGASNE-SFGSLTWV 751 (766)
Q Consensus 727 ~~~~~vt~~~~~~~~~~-~~G~~~~~ 751 (766)
+++++++++.+...-.. +-|.|.+.
T Consensus 94 sk~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 94 SKTVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEEEEcCCCCcCCEEEeeEEEE
Confidence 99999999997654444 77777775
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=89.42 E-value=0.91 Score=43.51 Aligned_cols=63 Identities=29% Similarity=0.199 Sum_probs=42.6
Q ss_pred ceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCch-------------------hhhhHHHHhcCceEEEEe
Q 004242 374 KQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSR-------------------TGKGEQVKLAGGAGMLLL 434 (766)
Q Consensus 374 ~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~~ 434 (766)
...|+||.+-+...... .-..+...|++||||++..+.-.+ ..|...+.+.||.|+|++
T Consensus 22 ~~~elVFvGyGi~ape~--~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVAPEY--GWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred ccCCEEEeccCccCccc--CcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 45677887765322111 112445678999999998764322 248999999999999999
Q ss_pred cCCC
Q 004242 435 NSDK 438 (766)
Q Consensus 435 ~~~~ 438 (766)
....
T Consensus 100 ~~~~ 103 (157)
T cd04821 100 HETE 103 (157)
T ss_pred eCCC
Confidence 7654
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=84.53 E-value=7.1 Score=43.33 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=56.3
Q ss_pred eeEEEEEEEEecCCCCeE-EEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEecCCC-CCeEEEEEEEC
Q 004242 682 MSLEYERSVTNVGTSYCT-YAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGAS-NESFGSLTWVS 752 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~t-y~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~-~~~~G~~~~~~ 752 (766)
...+....+.|.|+.+.| -++++..|.|-++.|.|.++---++|+++++.+|++++.... +.++=.|+-+.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 478889999999987765 577889999999999999776556699999999999975433 33666666544
No 82
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=81.89 E-value=0.95 Score=53.67 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=32.5
Q ss_pred CCeEEEeecceEEEEEEEEEEecCCCCCeEEEEEEEC-----CceeEEeEEEEE
Q 004242 716 PPILSFQKIGEILSYKVTFVSLRGASNESFGSLTWVS-----GKYAVKSPIAVT 764 (766)
Q Consensus 716 p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~-----~~~~v~~p~~v~ 764 (766)
|+.|.+. ++.+.+.|+|+++....+-.++.|.=-| .+...|+|+-|.
T Consensus 636 p~~l~l~--~~~R~i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 636 PEYLMLA--NQGRGINVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVI 687 (1304)
T ss_pred chhheec--cCCceeEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEE
Confidence 5555543 6788888888887644444666666544 578899998875
No 83
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=78.77 E-value=19 Score=32.64 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=48.4
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeC---CCc----eEEEEeCCeEEEeecceEEEEEEEEEEecCCCCC-eEEEEEEEC
Q 004242 683 SLEYERSVTNVGTSYCTYAVKVEE---PNG----VLVTITPPILSFQKIGEILSYKVTFVSLRGASNE-SFGSLTWVS 752 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~~ty~~~v~~---p~g----~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~-~~G~~~~~~ 752 (766)
..+.+++|+|.++.+..+.+.+.. .++ -.+-+.|..+.+.+ |+++.+.| +.....+.+. ..=+|.++.
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~p-g~~q~vRv-~~~~~~~~~~E~~yrl~~~~ 90 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEP-GESQTVRV-YRGSKLPIDRESLYRLSFRE 90 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEET-TEEEEEEE-EECSGS-SSS-EEEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCC-CCcEEEEE-EecCCCCCCceEEEEEEEEE
Confidence 456789999999988777777753 111 25778999999988 99999999 7744434444 556677654
No 84
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=73.14 E-value=15 Score=41.34 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=48.3
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEec
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLR 738 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (766)
..-.++..+.|.+..+.+|+++++..++..+...+..+++.+ |++.++.|++.++.
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~-g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKA-GEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECC-CCEEEEEEEEEech
Confidence 466788999999999999999999999988887655788877 99999999998864
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=62.76 E-value=41 Score=29.54 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=39.7
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEe
Q 004242 683 SLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSL 737 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 737 (766)
..+.+++|+|.++....|++....|... .|.|..=.+.+ |++.++.|++...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i~p-~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGIIEP-GESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE-T-TEEEEEEEEE-SS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEECC-CCEEEEEEEEEec
Confidence 5677889999999998999988888764 56798877776 9999999999874
No 86
>COG1470 Predicted membrane protein [Function unknown]
Probab=61.30 E-value=86 Score=35.21 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=44.6
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEe-CCCceEEEEeCC-----eEEEeecceEEEEEEEEEEec
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKVE-EPNGVLVTITPP-----ILSFQKIGEILSYKVTFVSLR 738 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v~-~p~g~~v~v~p~-----~~~~~~~~~~~~~~vt~~~~~ 738 (766)
.+..|++++.|.|..+.+|..++. .|+|-.....-. ++.+.+ |++++|+|.+....
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~-gE~kdvtleV~ps~ 345 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKP-GEEKDVTLEVYPSL 345 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecC-CCceEEEEEEecCC
Confidence 477899999999999999999997 888866655433 344555 99999999999764
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=59.27 E-value=80 Score=29.60 Aligned_cols=70 Identities=10% Similarity=0.141 Sum_probs=51.9
Q ss_pred eeEEEEEEEEecCCCCe-EEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEecCCCCCeEEEEEEEC
Q 004242 682 MSLEYERSVTNVGTSYC-TYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNESFGSLTWVS 752 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~-ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~ 752 (766)
....+.+.|-|...... .-++......++++--.|..+++.+ ++..++..+|++.....+-.||.|++..
T Consensus 69 ~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P-~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 69 YDIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAP-HGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred eeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCC-CcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 35566667777765442 2345555667788888899999988 8999999999997755555999999853
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=48.63 E-value=49 Score=27.62 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=29.7
Q ss_pred EEEEeCCeEEEeecceEEEEEEEEEEecCCCCCeEEEEEEECCc
Q 004242 711 LVTITPPILSFQKIGEILSYKVTFVSLRGASNESFGSLTWVSGK 754 (766)
Q Consensus 711 ~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~ 754 (766)
.+++.|..+++.. |+++.|+++++..... . ...+.|++..
T Consensus 4 ~i~i~p~~~~l~~-G~~~~l~a~~~~~~~~--~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASVKK-GLTLQLTATVTPSSAK--V-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEEeC-CCeEEEEEEEECCCCC--c-cceEEEEECC
Confidence 5788999999986 9999999997643211 1 5778888743
No 89
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=44.81 E-value=1.1e+02 Score=27.40 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=44.9
Q ss_pred cccc-cCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCC------CCcccHHHHHHHHHHhCCCEEEE
Q 004242 248 AGMR-YTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSR------PYYRDTVAIASFGATQSGVFVSC 319 (766)
Q Consensus 248 ~GvA-P~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~------~~~~~~~~~a~~~a~~~Gi~vV~ 319 (766)
.... ++++|+.+ +.++||....++.-+++..+.|+|+|-+|-..... |+ .+.+...+..+. |+-||.
T Consensus 31 ~~y~~~~~elvgf--~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~-~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 31 ARYDDEDVELVGF--FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH-IDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred ccCCCCCeEEEEE--eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC-HHHHHHHHHHHh--CCCEee
Confidence 4444 46777775 45667889999999999999999999998765432 33 333443332222 887774
No 90
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=39.73 E-value=1.9e+02 Score=24.39 Aligned_cols=54 Identities=26% Similarity=0.296 Sum_probs=26.3
Q ss_pred EEEEEEEEecCCCCeE--------EEEEEeCCCceEEE---------EeCCeEEEeecceEEEEEEEEEEec
Q 004242 684 LEYERSVTNVGTSYCT--------YAVKVEEPNGVLVT---------ITPPILSFQKIGEILSYKVTFVSLR 738 (766)
Q Consensus 684 ~~~~rtvtn~g~~~~t--------y~~~v~~p~g~~v~---------v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (766)
..++.+|+|.++.+.+ |.+.+..+.|-.|- -.-...++.+ |++++|..++....
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~p-Ge~~~~~~~~~~~~ 72 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEP-GESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-T-T-EEEEEEEESS--
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECC-CCEEEEEEEECCCC
Confidence 4567788888875543 44444444443333 2223455655 89999988887643
No 91
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=37.87 E-value=1.2e+02 Score=25.69 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=30.1
Q ss_pred eeEEEEEEEEecCCCC-eEEEEEEeCCCceEEEEeCCeE-EEeecceEEEEEEEEEEe
Q 004242 682 MSLEYERSVTNVGTSY-CTYAVKVEEPNGVLVTITPPIL-SFQKIGEILSYKVTFVSL 737 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~-~ty~~~v~~p~g~~v~v~p~~~-~~~~~~~~~~~~vt~~~~ 737 (766)
...+++.+|+|.|... ..+.+.+... |..+ .-..+ .+.+ |+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L~~-g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSLAP-GESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB-T-TEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCcCC-CcEEEEEEEEEeC
Confidence 4889999999999865 4456655322 2222 11112 3444 8888888888875
No 92
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=36.95 E-value=96 Score=27.22 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=12.8
Q ss_pred eEEEEEEEEecCCCC
Q 004242 683 SLEYERSVTNVGTSY 697 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~ 697 (766)
..+++++|+|.|+.+
T Consensus 19 r~~~~l~V~NtGDRp 33 (101)
T cd00407 19 REAVTLKVKNTGDRP 33 (101)
T ss_pred CCEEEEEEEeCCCcc
Confidence 567889999999976
No 93
>PLN03080 Probable beta-xylosidase; Provisional
Probab=36.67 E-value=70 Score=39.15 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=33.7
Q ss_pred eEEEEEEEEecCCCCeEEEEEE--eCCCceEEEEe------CCeEEEeecceEEEEEEEEEE
Q 004242 683 SLEYERSVTNVGTSYCTYAVKV--EEPNGVLVTIT------PPILSFQKIGEILSYKVTFVS 736 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~~ty~~~v--~~p~g~~v~v~------p~~~~~~~~~~~~~~~vt~~~ 736 (766)
..+++++|||+|+..-...+.+ ..|.. .+... -+.+.+.+ ||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~-~~~~P~k~L~gF~kv~L~~-Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPV-VPGVPEKQLVGFDRVHTAS-GRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCcc-CCCCcchhccCcEeEeeCC-CCEEEEEEEeCc
Confidence 5789999999998766555554 34432 11111 22344555 999999999986
No 94
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=36.64 E-value=1.7e+02 Score=25.67 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=36.1
Q ss_pred eeEEEEEEEEecCCCC-eEEEEE----EeCCCceE---EEEeCCeEEEeecceEEEEEEEEEEec
Q 004242 682 MSLEYERSVTNVGTSY-CTYAVK----VEEPNGVL---VTITPPILSFQKIGEILSYKVTFVSLR 738 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~-~ty~~~----v~~p~g~~---v~v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (766)
...++.++++|..+.. .+-++. ...-.|+. +...-..+++.+ +++.+++++|...+
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p-~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKP-GETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-T-TEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCC-CCEEEEEEEEEcee
Confidence 5889999999999877 442222 12344663 566666777777 99999999998754
No 95
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=36.13 E-value=82 Score=38.52 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=34.9
Q ss_pred eeEEEEEEEEecCCCCeEEEEEE--eCCCceEEEEeCC-------eEEEeecceEEEEEEEEEEe
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKV--EEPNGVLVTITPP-------ILSFQKIGEILSYKVTFVSL 737 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v--~~p~g~~v~v~p~-------~~~~~~~~~~~~~~vt~~~~ 737 (766)
...+++++|||+|+..-.-.+.+ ..|.+- +. .|. .+.+++ ||++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L~p-Ges~~V~~~l~~~ 728 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIMLKP-GETQTVSFPIDIE 728 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeECC-CCeEEEEEeecHH
Confidence 46889999999998665444443 444321 21 232 345555 9999999999875
No 96
>PRK13203 ureB urease subunit beta; Reviewed
Probab=35.66 E-value=1.1e+02 Score=26.96 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=12.8
Q ss_pred eEEEEEEEEecCCCC
Q 004242 683 SLEYERSVTNVGTSY 697 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~ 697 (766)
..+++++|+|.|+.+
T Consensus 19 r~~~~l~V~NtGDRP 33 (102)
T PRK13203 19 RETVTLTVANTGDRP 33 (102)
T ss_pred CCEEEEEEEeCCCCc
Confidence 567889999999976
No 97
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=32.58 E-value=1.3e+02 Score=26.37 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=12.7
Q ss_pred eEEEEEEEEecCCCC
Q 004242 683 SLEYERSVTNVGTSY 697 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~ 697 (766)
..+.+++|+|.|+.+
T Consensus 19 r~~~~l~V~NtGDRP 33 (101)
T TIGR00192 19 RKTVSVKVKNTGDRP 33 (101)
T ss_pred CcEEEEEEEeCCCcc
Confidence 567889999999976
No 98
>PRK13202 ureB urease subunit beta; Reviewed
Probab=32.23 E-value=1.1e+02 Score=26.92 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=12.2
Q ss_pred EEEEEEEEecCCCC
Q 004242 684 LEYERSVTNVGTSY 697 (766)
Q Consensus 684 ~~~~rtvtn~g~~~ 697 (766)
.+++++|+|.|+.+
T Consensus 21 ~~~~l~V~NtGDRP 34 (104)
T PRK13202 21 SRLQMRIINAGDRP 34 (104)
T ss_pred ceEEEEEEeCCCCc
Confidence 57889999999976
No 99
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.85 E-value=46 Score=24.01 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=19.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcc
Q 004242 557 AALLKSVHEDWSTAAIKSALMTTA 580 (766)
Q Consensus 557 aALl~~~~P~~s~~~ik~~L~~TA 580 (766)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 346789999999999999997654
No 100
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=30.42 E-value=1.2e+02 Score=26.46 Aligned_cols=15 Identities=20% Similarity=0.115 Sum_probs=12.1
Q ss_pred eEEEEEEEEecCCCC
Q 004242 683 SLEYERSVTNVGTSY 697 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~ 697 (766)
..+.+.+|.|.|+.+
T Consensus 19 r~~~~i~V~NtGDRP 33 (106)
T COG0832 19 RPTVTIEVANTGDRP 33 (106)
T ss_pred CcceEEEEeecCCCc
Confidence 566778899999976
No 101
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=30.16 E-value=2e+02 Score=21.08 Aligned_cols=44 Identities=25% Similarity=0.204 Sum_probs=25.2
Q ss_pred EEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEE
Q 004242 688 RSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTF 734 (766)
Q Consensus 688 rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~ 734 (766)
.+++|.|+..... -.+...-|-.. ++...-.+.+ |++..++|++
T Consensus 2 F~~~N~g~~~L~I-~~v~tsCgCt~-~~~~~~~i~P-Ges~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVI-TDVQTSCGCTT-AEYSKKPIAP-GESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEE-EEeeEccCCEE-eeCCcceECC-CCEEEEEEEC
Confidence 5789999887542 22333333322 2333333555 9999888874
No 102
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=30.10 E-value=24 Score=16.16 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=4.2
Q ss_pred cccCCC
Q 004242 493 SFSSRG 498 (766)
Q Consensus 493 ~fSs~G 498 (766)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 103
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.65 E-value=3.8e+02 Score=26.37 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=35.1
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEeC----CCceEEEEeC---CeEEEeecceEEEEEEEEEEe
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKVEE----PNGVLVTITP---PILSFQKIGEILSYKVTFVSL 737 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v~~----p~g~~v~v~p---~~~~~~~~~~~~~~~vt~~~~ 737 (766)
...+++.+|.|+|+.+ -|.+++.. +++.++ |.- .++..-+.|+..+.++++++.
T Consensus 38 ~~v~V~~~iyN~G~~~-A~dV~l~D~~fp~~~F~l-vsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSA-AYDVKLTDDSFPPEDFEL-VSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred cEEEEEEEEEECCCCe-EEEEEEECCCCCccccEe-ccCceEEEEEEECCCCeEEEEEEEeee
Confidence 5889999999999875 57888854 233333 111 112222448888888888875
No 104
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=28.14 E-value=1.1e+02 Score=26.71 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=11.5
Q ss_pred eEEEEEEEEecCCCC
Q 004242 683 SLEYERSVTNVGTSY 697 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~ 697 (766)
..+++++|+|.|+.+
T Consensus 18 r~~~~l~V~N~GDRP 32 (100)
T PF00699_consen 18 RERITLEVTNTGDRP 32 (100)
T ss_dssp SEEEEEEEEE-SSS-
T ss_pred CcEEEEEEEeCCCcc
Confidence 678899999999976
No 105
>PRK15019 CsdA-binding activator; Provisional
Probab=27.12 E-value=53 Score=31.13 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=27.7
Q ss_pred EEeecccchhhhhhhHHHHHHhhCCCCCHHHHHH
Q 004242 541 NIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKS 574 (766)
Q Consensus 541 ~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~ 574 (766)
..+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3344555 68999999999999999999999876
No 106
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=26.88 E-value=3.1e+02 Score=23.24 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=29.7
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEE
Q 004242 683 SLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTF 734 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~ 734 (766)
.-.+.++++|.|....++++.--.-. .-.|.++++++ |++++....+
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v~a-g~~~~~~w~l 65 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTVAA-GQTVSLTWPL 65 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEECC-CCEEEEEEee
Confidence 34788999999988777666541111 11355566666 7777666655
No 107
>PRK13201 ureB urease subunit beta; Reviewed
Probab=26.19 E-value=1.8e+02 Score=26.90 Aligned_cols=15 Identities=27% Similarity=0.124 Sum_probs=12.7
Q ss_pred eEEEEEEEEecCCCC
Q 004242 683 SLEYERSVTNVGTSY 697 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~ 697 (766)
..+++++|+|.|+.+
T Consensus 19 r~~~~l~V~NtGDRP 33 (136)
T PRK13201 19 HPETVIEVENTGDRP 33 (136)
T ss_pred CCEEEEEEEeCCCcc
Confidence 566889999999976
No 108
>PRK13205 ureB urease subunit beta; Reviewed
Probab=25.89 E-value=1.7e+02 Score=27.56 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=12.9
Q ss_pred eEEEEEEEEecCCCC
Q 004242 683 SLEYERSVTNVGTSY 697 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~ 697 (766)
..+++++|+|.|+.+
T Consensus 19 R~~i~L~V~NtGDRP 33 (162)
T PRK13205 19 REAKTIEIINTGDRP 33 (162)
T ss_pred CcEEEEEEEeCCCCc
Confidence 667889999999976
No 109
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=25.76 E-value=59 Score=30.49 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=28.4
Q ss_pred EEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHH
Q 004242 541 NIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSA 575 (766)
Q Consensus 541 ~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~ 575 (766)
..+.|.| =|++|-|++|||.+.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 589999999999999999999998753
No 110
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=25.45 E-value=46 Score=22.80 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.6
Q ss_pred chhhhhhhHHHHH
Q 004242 548 MSCPHVSGLAALL 560 (766)
Q Consensus 548 mAaP~VAG~aALl 560 (766)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999997654
No 111
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=24.32 E-value=1.1e+02 Score=21.52 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=11.8
Q ss_pred CchhHHHHHHHHHHHhhhhccCCCceEEE
Q 004242 1 MVFRTFLLLLVLTATTSIASIGKQTTYVI 29 (766)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~yiV 29 (766)
|++..+.+++++++ .+++....++..||
T Consensus 1 Mk~l~~a~~l~lLa-l~~a~~~~pG~ViI 28 (36)
T PF08194_consen 1 MKCLSLAFALLLLA-LAAAVPATPGNVII 28 (36)
T ss_pred CceeHHHHHHHHHH-HHhcccCCCCeEEE
Confidence 66665533333332 22222224566555
No 112
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=24.30 E-value=2e+02 Score=21.99 Aligned_cols=29 Identities=34% Similarity=0.399 Sum_probs=20.2
Q ss_pred eeEEEEEEEEecCCCCeEEEEEE--eCCCceE
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKV--EEPNGVL 711 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v--~~p~g~~ 711 (766)
...+++++++|.|....+ .+.+ .-|+|+.
T Consensus 12 d~v~Yti~v~N~g~~~a~-~v~v~D~lP~g~~ 42 (53)
T TIGR01451 12 DTITYTITVTNNGNVPAT-NVVVTDILPSGTT 42 (53)
T ss_pred CEEEEEEEEEECCCCceE-eEEEEEcCCCCCE
Confidence 489999999999987654 3444 3455544
No 113
>PRK13204 ureB urease subunit beta; Reviewed
Probab=23.93 E-value=2e+02 Score=27.28 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=12.9
Q ss_pred eEEEEEEEEecCCCC
Q 004242 683 SLEYERSVTNVGTSY 697 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~ 697 (766)
..+++++|+|.|+.+
T Consensus 42 r~~~~l~V~NtGDRP 56 (159)
T PRK13204 42 RPRTTLTVRNTGDRP 56 (159)
T ss_pred CcEEEEEEEeCCCCc
Confidence 667889999999976
No 114
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=23.72 E-value=4.1e+02 Score=22.51 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=29.1
Q ss_pred EEEEEEecCCCCeEEEEEE-----eCCCceEEEEeCCeEEEeecceEEEEEEEEEEe
Q 004242 686 YERSVTNVGTSYCTYAVKV-----EEPNGVLVTITPPILSFQKIGEILSYKVTFVSL 737 (766)
Q Consensus 686 ~~rtvtn~g~~~~ty~~~v-----~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 737 (766)
++++|.-.|+.....++.+ .+-.|....-...+|+|.+....++++|.+.-.
T Consensus 20 ~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~dD 76 (90)
T smart00237 20 VEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIIDD 76 (90)
T ss_pred EEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeCC
Confidence 4444544454443444443 244555565567889998844556666665543
No 115
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=22.82 E-value=72 Score=29.91 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=27.7
Q ss_pred EEeecccchhhhhhhHHHHHHhhCCCCCHHHHHH
Q 004242 541 NIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKS 574 (766)
Q Consensus 541 ~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~ 574 (766)
..+.|.| =|++|-|.+||+.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444555 68999999999999999999999875
No 116
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=22.73 E-value=1.8e+02 Score=23.66 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=20.6
Q ss_pred eeEEEEEEEEecCCCCeEEEEEE--eCCCceEE
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKV--EEPNGVLV 712 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v--~~p~g~~v 712 (766)
...+++++|+|.|..... .+.+ .-|.|+.+
T Consensus 41 d~v~ytitvtN~G~~~a~-nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPAT-NVVVTDTLPAGLTF 72 (76)
T ss_pred CEEEEEEEEEECCCCeeE-eEEEEEcCCCCCEE
Confidence 488999999999987643 4444 34556543
No 117
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=22.50 E-value=6.2e+02 Score=31.54 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=19.8
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004242 556 LAALLKSVHEDWSTAAIKSALMTTAYT 582 (766)
Q Consensus 556 ~aALl~~~~P~~s~~~ik~~L~~TA~~ 582 (766)
+.-=++|+||+.+.+|+..+...-+..
T Consensus 322 ~l~el~~~~p~~~~~~l~~~a~~~~~~ 348 (928)
T TIGR00845 322 ILKELKQKHPDKDLEQLEEMANYQVLS 348 (928)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHhc
Confidence 444568889999999988877655543
No 118
>PRK13198 ureB urease subunit beta; Reviewed
Probab=22.34 E-value=2.2e+02 Score=26.91 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=12.9
Q ss_pred eEEEEEEEEecCCCC
Q 004242 683 SLEYERSVTNVGTSY 697 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~ 697 (766)
..+++++|+|.|+.+
T Consensus 47 r~~~~l~V~NtGDRP 61 (158)
T PRK13198 47 KPVTKVKVRNTGDRP 61 (158)
T ss_pred CcEEEEEEEeCCCCc
Confidence 567889999999976
No 119
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=21.51 E-value=83 Score=28.94 Aligned_cols=33 Identities=27% Similarity=0.196 Sum_probs=26.5
Q ss_pred EeecccchhhhhhhHHHHHHhhCCCCCHHHHHHH
Q 004242 542 IISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSA 575 (766)
Q Consensus 542 ~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~ 575 (766)
.+.|.|= |+.|-|++||+.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455554 67999999999999999999998764
No 120
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.20 E-value=76 Score=29.89 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=25.3
Q ss_pred eecccchhhhhhhHHHHHHhhCCCCCHHHHHH
Q 004242 543 ISGTSMSCPHVSGLAALLKSVHEDWSTAAIKS 574 (766)
Q Consensus 543 ~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~ 574 (766)
+.|=| =|++|.|++|++++.+-..||++|..
T Consensus 74 F~gdS-dA~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 74 FFGDS-DARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred Eeccc-hhHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 33444 37999999999999999999999864
No 121
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=21.10 E-value=1.6e+02 Score=23.29 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=22.9
Q ss_pred eEEEeecceEEEEEEEEEEecCCCCC---eEEEEEEEC--Ccee
Q 004242 718 ILSFQKIGEILSYKVTFVSLRGASNE---SFGSLTWVS--GKYA 756 (766)
Q Consensus 718 ~~~~~~~~~~~~~~vt~~~~~~~~~~---~~G~~~~~~--~~~~ 756 (766)
+|+|+=.|+.-+-++||++.+....+ .--.|.|+| |.|.
T Consensus 15 Sitf~W~g~~t~atLtFePg~Glg~~n~~pVatl~W~DsaG~H~ 58 (68)
T PF09244_consen 15 SITFTWTGATTSATLTFEPGRGLGVDNTTPVATLAWTDSAGDHR 58 (68)
T ss_dssp EEEEEEE-SS-EEEEEE-GGGC-STT--S--EEEEEEETTEEEE
T ss_pred EEEEEEeccccEEEEEEccCcccCccCCcceeEEEEeccCCCcc
Confidence 56666557777888888887643322 557899998 5564
No 122
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=20.92 E-value=79 Score=24.48 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=21.4
Q ss_pred eEEeecccchhhhhhhHH------HHHHhhCCCCCHHHHHHHHH
Q 004242 540 FNIISGTSMSCPHVSGLA------ALLKSVHEDWSTAAIKSALM 577 (766)
Q Consensus 540 y~~~sGTSmAaP~VAG~a------ALl~~~~P~~s~~~ik~~L~ 577 (766)
--.+.||=+..=.|.... .-+.+.||.+++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 344556665554444432 23466799999999999884
Done!