Query 004243
Match_columns 766
No_of_seqs 1149 out of 4597
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 20:02:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.4E-46 7.3E-51 370.9 37.1 459 232-759 28-501 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 2.6E-42 5.6E-47 343.3 32.2 385 251-729 111-505 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 4.6E-35 9.9E-40 349.1 60.6 487 257-762 364-885 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-34 4.9E-39 343.2 62.4 492 251-760 120-681 (899)
5 PRK11447 cellulose synthase su 100.0 2.1E-33 4.5E-38 334.2 58.3 489 233-748 42-705 (1157)
6 PRK11447 cellulose synthase su 100.0 2.8E-32 6E-37 324.6 58.1 470 233-742 161-739 (1157)
7 TIGR00990 3a0801s09 mitochondr 100.0 6.5E-32 1.4E-36 302.2 50.1 414 255-750 126-578 (615)
8 KOG2002 TPR-containing nuclear 100.0 5.8E-30 1.3E-34 269.5 44.7 484 261-762 204-764 (1018)
9 TIGR00990 3a0801s09 mitochondr 100.0 5E-30 1.1E-34 287.1 45.6 394 322-762 129-556 (615)
10 PRK09782 bacteriophage N4 rece 100.0 7.9E-29 1.7E-33 280.8 55.5 500 233-759 58-722 (987)
11 KOG2002 TPR-containing nuclear 100.0 4.7E-29 1E-33 262.7 46.1 475 252-762 160-730 (1018)
12 PRK09782 bacteriophage N4 rece 100.0 1.6E-26 3.5E-31 262.2 52.1 495 256-763 44-692 (987)
13 KOG0547 Translocase of outer m 100.0 5.8E-27 1.3E-31 228.6 40.2 421 253-753 112-576 (606)
14 PRK15174 Vi polysaccharide exp 100.0 6.2E-27 1.3E-31 260.7 41.9 329 355-747 45-385 (656)
15 PRK15174 Vi polysaccharide exp 100.0 1E-26 2.3E-31 258.9 42.0 327 323-714 45-385 (656)
16 KOG0624 dsRNA-activated protei 100.0 3E-26 6.5E-31 213.7 32.4 350 319-765 37-392 (504)
17 PHA02790 Kelch-like protein; P 100.0 1.4E-29 3E-34 271.4 11.9 150 47-200 15-166 (480)
18 PRK10049 pgaA outer membrane p 100.0 7.3E-26 1.6E-30 257.8 42.0 385 336-757 33-470 (765)
19 PHA02713 hypothetical protein; 100.0 1E-28 2.2E-33 268.2 15.1 153 43-201 14-168 (557)
20 KOG4441 Proteins containing BT 100.0 1.5E-28 3.3E-33 265.0 13.4 152 45-200 27-178 (571)
21 KOG0547 Translocase of outer m 100.0 6.9E-25 1.5E-29 214.2 36.9 394 323-763 118-552 (606)
22 KOG4350 Uncharacterized conser 100.0 2.8E-28 6.1E-33 230.7 11.9 156 43-201 33-190 (620)
23 PRK10049 pgaA outer membrane p 99.9 2.5E-24 5.4E-29 245.3 43.2 394 339-760 3-439 (765)
24 KOG0548 Molecular co-chaperone 99.9 3.8E-24 8.1E-29 212.9 34.9 405 324-761 6-473 (539)
25 PHA03098 kelch-like protein; P 99.9 6.3E-27 1.4E-31 258.1 16.4 145 49-201 4-150 (534)
26 KOG1126 DNA-binding cell divis 99.9 1E-23 2.3E-28 215.1 27.4 298 355-749 320-626 (638)
27 PRK14574 hmsH outer membrane p 99.9 2.1E-21 4.6E-26 216.2 48.2 443 256-752 34-522 (822)
28 KOG1155 Anaphase-promoting com 99.9 2.4E-21 5.2E-26 188.6 41.8 308 391-762 233-555 (559)
29 KOG1155 Anaphase-promoting com 99.9 6.3E-22 1.4E-26 192.6 37.3 368 256-715 164-541 (559)
30 KOG2003 TPR repeat-containing 99.9 1.5E-22 3.3E-27 195.6 31.5 420 326-757 243-703 (840)
31 KOG2076 RNA polymerase III tra 99.9 7E-20 1.5E-24 192.9 48.7 476 256-747 139-853 (895)
32 KOG1173 Anaphase-promoting com 99.9 4.9E-21 1.1E-25 191.4 37.4 423 321-760 50-535 (611)
33 KOG1126 DNA-binding cell divis 99.9 5.2E-23 1.1E-27 210.0 23.6 268 253-544 350-624 (638)
34 KOG0495 HAT repeat protein [RN 99.9 7.9E-19 1.7E-23 177.7 51.7 569 158-756 282-893 (913)
35 PRK11788 tetratricopeptide rep 99.9 5.4E-21 1.2E-25 203.8 35.4 304 353-747 36-355 (389)
36 PRK14574 hmsH outer membrane p 99.9 9.6E-20 2.1E-24 203.0 46.4 417 318-761 32-497 (822)
37 KOG0495 HAT repeat protein [RN 99.9 1.8E-18 3.8E-23 175.2 49.1 289 463-762 536-865 (913)
38 KOG1174 Anaphase-promoting com 99.9 3E-19 6.4E-24 171.4 39.4 290 463-763 218-520 (564)
39 PRK11788 tetratricopeptide rep 99.9 1.6E-20 3.5E-25 200.1 33.0 254 463-756 55-324 (389)
40 KOG0548 Molecular co-chaperone 99.9 8E-20 1.7E-24 182.2 34.5 444 259-740 5-486 (539)
41 KOG0624 dsRNA-activated protei 99.9 9.6E-20 2.1E-24 170.5 31.3 311 253-654 35-378 (504)
42 KOG2003 TPR repeat-containing 99.9 2.3E-19 5.1E-24 173.7 34.6 417 258-728 239-708 (840)
43 PLN03077 Protein ECB2; Provisi 99.9 9.3E-19 2E-23 204.4 47.1 457 257-758 223-701 (857)
44 KOG1173 Anaphase-promoting com 99.9 6.6E-20 1.4E-24 183.4 31.5 365 255-714 140-522 (611)
45 PLN03081 pentatricopeptide (PP 99.9 2.3E-18 5.1E-23 196.1 48.7 443 259-743 90-557 (697)
46 KOG4162 Predicted calmodulin-b 99.9 1.1E-18 2.3E-23 181.0 40.6 409 255-749 322-789 (799)
47 PLN03077 Protein ECB2; Provisi 99.9 1.3E-17 2.8E-22 194.8 49.9 445 256-742 253-719 (857)
48 KOG1127 TPR repeat-containing 99.9 4.3E-18 9.2E-23 180.2 35.6 505 248-755 484-1187(1238)
49 KOG2076 RNA polymerase III tra 99.8 3.7E-18 8.1E-23 180.1 34.3 128 588-744 382-513 (895)
50 KOG1127 TPR repeat-containing 99.8 1.7E-18 3.7E-23 183.2 30.8 386 337-744 477-914 (1238)
51 PLN03081 pentatricopeptide (PP 99.8 3.6E-17 7.8E-22 186.4 44.2 424 293-758 92-538 (697)
52 KOG4591 Uncharacterized conser 99.8 3.9E-21 8.5E-26 164.4 8.3 146 46-198 58-207 (280)
53 TIGR00540 hemY_coli hemY prote 99.8 6.6E-18 1.4E-22 178.9 34.4 294 356-743 88-399 (409)
54 KOG2075 Topoisomerase TOP1-int 99.8 4.5E-20 9.8E-25 180.6 15.2 155 43-201 103-263 (521)
55 KOG0550 Molecular chaperone (D 99.8 2.4E-19 5.2E-24 172.4 19.3 313 322-765 51-371 (486)
56 PLN03218 maturation of RBCL 1; 99.8 1.6E-15 3.4E-20 174.4 52.8 443 258-739 372-872 (1060)
57 PRK10747 putative protoheme IX 99.8 1E-16 2.3E-21 168.7 37.9 299 355-744 87-391 (398)
58 PF13429 TPR_15: Tetratricopep 99.8 9.3E-20 2E-24 183.6 14.1 258 472-743 5-277 (280)
59 PLN03218 maturation of RBCL 1; 99.8 5.5E-15 1.2E-19 169.9 53.6 464 236-744 387-910 (1060)
60 PF00651 BTB: BTB/POZ domain; 99.8 9.3E-20 2E-24 155.3 7.1 104 48-154 4-110 (111)
61 KOG1129 TPR repeat-containing 99.8 1.9E-18 4.1E-23 160.9 15.8 229 391-714 229-462 (478)
62 PRK11189 lipoprotein NlpI; Pro 99.8 1.7E-17 3.7E-22 167.0 24.2 143 463-645 46-193 (296)
63 COG3063 PilF Tfp pilus assembl 99.8 5.2E-17 1.1E-21 145.1 24.2 207 477-753 35-246 (250)
64 PRK11189 lipoprotein NlpI; Pro 99.8 4.1E-17 8.9E-22 164.3 26.2 228 490-760 39-283 (296)
65 PRK12370 invasion protein regu 99.8 5.2E-17 1.1E-21 178.6 28.2 184 337-544 280-474 (553)
66 KOG1174 Anaphase-promoting com 99.8 1.3E-15 2.9E-20 146.6 33.4 309 344-717 187-507 (564)
67 PRK12370 invasion protein regu 99.8 1E-16 2.2E-21 176.3 28.9 268 388-743 261-535 (553)
68 KOG1125 TPR repeat-containing 99.8 1.7E-17 3.6E-22 167.3 20.0 222 481-713 289-530 (579)
69 KOG4162 Predicted calmodulin-b 99.8 2.3E-15 5E-20 156.6 35.9 413 320-762 323-768 (799)
70 KOG4682 Uncharacterized conser 99.8 1.4E-18 3E-23 165.8 11.3 149 47-198 62-212 (488)
71 KOG1129 TPR repeat-containing 99.8 2.5E-17 5.5E-22 153.5 17.2 242 356-658 227-470 (478)
72 TIGR00540 hemY_coli hemY prote 99.8 3.9E-15 8.5E-20 157.8 36.4 302 255-646 83-399 (409)
73 PF13429 TPR_15: Tetratricopep 99.8 4E-18 8.6E-23 171.7 13.0 253 327-645 15-276 (280)
74 KOG0550 Molecular chaperone (D 99.7 2.7E-16 5.9E-21 151.6 22.2 354 297-740 61-440 (486)
75 KOG1125 TPR repeat-containing 99.7 2E-16 4.4E-21 159.5 21.5 254 323-634 288-559 (579)
76 KOG1915 Cell cycle control pro 99.7 4.6E-13 1E-17 131.5 42.7 446 255-758 72-550 (677)
77 PRK10747 putative protoheme IX 99.7 1.7E-14 3.7E-19 152.0 34.6 305 254-647 82-391 (398)
78 TIGR02521 type_IV_pilW type IV 99.7 1.3E-15 2.9E-20 149.8 24.6 201 475-745 29-234 (234)
79 KOG1156 N-terminal acetyltrans 99.7 3.4E-13 7.4E-18 137.9 41.8 427 256-744 7-469 (700)
80 KOG0783 Uncharacterized conser 99.7 9.1E-18 2E-22 173.6 8.2 144 52-198 708-857 (1267)
81 smart00225 BTB Broad-Complex, 99.7 3.8E-17 8.2E-22 133.6 9.7 90 56-148 1-90 (90)
82 TIGR02521 type_IV_pilW type IV 99.7 6.3E-15 1.4E-19 144.9 24.7 185 510-762 30-217 (234)
83 PLN02789 farnesyltranstransfer 99.7 8.7E-15 1.9E-19 146.4 25.2 239 475-753 35-312 (320)
84 COG2956 Predicted N-acetylgluc 99.7 1.1E-13 2.4E-18 129.7 29.7 231 358-648 41-280 (389)
85 KOG1156 N-terminal acetyltrans 99.7 3.3E-13 7.2E-18 138.0 34.3 357 323-748 10-439 (700)
86 COG2956 Predicted N-acetylgluc 99.7 4.5E-13 9.8E-18 125.6 31.1 257 335-655 52-320 (389)
87 KOG1840 Kinesin light chain [C 99.7 1.4E-13 3E-18 143.6 30.6 238 473-742 195-478 (508)
88 cd05804 StaR_like StaR_like; a 99.7 1.3E-13 2.8E-18 144.9 31.1 315 347-744 1-337 (355)
89 PLN02789 farnesyltranstransfer 99.7 3.4E-14 7.4E-19 142.2 25.2 211 464-714 58-306 (320)
90 KOG2376 Signal recognition par 99.6 1.5E-11 3.2E-16 124.8 42.3 433 262-760 18-504 (652)
91 COG3063 PilF Tfp pilus assembl 99.6 5.7E-14 1.2E-18 125.9 21.5 202 321-544 36-240 (250)
92 KOG1915 Cell cycle control pro 99.6 5E-11 1.1E-15 117.5 43.2 388 322-743 75-500 (677)
93 KOG1840 Kinesin light chain [C 99.6 3.5E-14 7.5E-19 148.1 22.8 257 347-709 194-478 (508)
94 KOG3785 Uncharacterized conser 99.5 4.2E-11 9.1E-16 113.7 31.6 375 337-746 41-493 (557)
95 COG3071 HemY Uncharacterized e 99.5 8.4E-11 1.8E-15 114.3 34.5 294 359-743 91-390 (400)
96 KOG3785 Uncharacterized conser 99.5 5.6E-11 1.2E-15 112.8 32.4 380 266-718 32-498 (557)
97 TIGR03302 OM_YfiO outer membra 99.5 9.1E-13 2E-17 129.3 21.3 200 472-746 28-235 (235)
98 PRK15359 type III secretion sy 99.5 3.7E-13 8E-18 119.2 14.1 122 638-762 14-140 (144)
99 KOG1130 Predicted G-alpha GTPa 99.5 8.2E-13 1.8E-17 127.5 16.3 294 392-762 24-369 (639)
100 cd05804 StaR_like StaR_like; a 99.5 3.1E-11 6.6E-16 126.9 29.1 302 319-647 5-337 (355)
101 TIGR03302 OM_YfiO outer membra 99.5 2.6E-12 5.7E-17 126.0 19.6 184 318-542 31-234 (235)
102 PF12569 NARP1: NMDA receptor- 99.4 1.5E-10 3.2E-15 122.9 30.6 269 476-744 3-335 (517)
103 PRK15359 type III secretion sy 99.4 2.6E-12 5.5E-17 113.8 14.4 123 464-629 14-138 (144)
104 PF12569 NARP1: NMDA receptor- 99.4 9.1E-10 2E-14 117.0 36.0 277 321-614 5-334 (517)
105 PRK10370 formate-dependent nit 99.4 1.3E-11 2.8E-16 115.5 19.3 159 592-759 23-189 (198)
106 KOG2047 mRNA splicing factor [ 99.4 1.9E-08 4.1E-13 103.4 42.2 294 466-760 236-598 (835)
107 KOG2376 Signal recognition par 99.4 1.7E-09 3.6E-14 110.2 34.3 354 330-740 22-443 (652)
108 KOG0553 TPR repeat-containing 99.4 1.9E-12 4.1E-17 121.4 11.8 107 659-765 93-200 (304)
109 PRK14720 transcript cleavage f 99.4 1.1E-10 2.4E-15 129.2 27.0 282 346-747 25-310 (906)
110 KOG4340 Uncharacterized conser 99.4 2.2E-10 4.7E-15 106.4 24.3 277 331-651 21-310 (459)
111 KOG1130 Predicted G-alpha GTPa 99.4 2E-11 4.3E-16 118.1 16.8 281 359-710 24-344 (639)
112 KOG2047 mRNA splicing factor [ 99.4 3.2E-07 6.9E-12 94.7 47.6 425 254-696 246-709 (835)
113 PRK10370 formate-dependent nit 99.3 4.5E-11 9.7E-16 111.9 16.3 115 463-617 59-176 (198)
114 TIGR02552 LcrH_SycD type III s 99.3 3.5E-11 7.6E-16 106.5 13.9 123 639-761 5-132 (135)
115 KOG3060 Uncharacterized conser 99.3 4.2E-10 9.1E-15 102.6 20.4 169 586-754 53-231 (289)
116 KOG1128 Uncharacterized conser 99.3 1.4E-10 3E-15 120.9 18.8 218 474-744 395-617 (777)
117 COG3071 HemY Uncharacterized e 99.3 6.2E-09 1.3E-13 101.6 28.9 289 333-646 97-390 (400)
118 PRK14720 transcript cleavage f 99.3 1.1E-09 2.3E-14 121.5 26.4 219 470-726 24-269 (906)
119 KOG1128 Uncharacterized conser 99.3 1.2E-10 2.6E-15 121.3 16.6 221 349-647 395-617 (777)
120 COG5010 TadD Flp pilus assembl 99.3 6.3E-10 1.4E-14 102.7 19.3 177 402-643 50-228 (257)
121 PRK04841 transcriptional regul 99.3 1.1E-08 2.4E-13 121.7 35.7 360 354-748 343-765 (903)
122 KOG0553 TPR repeat-containing 99.3 5.3E-11 1.2E-15 111.8 12.0 98 323-420 84-184 (304)
123 PRK15179 Vi polysaccharide bio 99.3 7.2E-10 1.6E-14 122.3 22.9 137 467-614 76-217 (694)
124 PRK15179 Vi polysaccharide bio 99.2 1.1E-09 2.4E-14 120.8 23.9 132 385-540 86-217 (694)
125 KOG4340 Uncharacterized conser 99.2 1.1E-08 2.4E-13 95.2 25.5 381 232-649 23-446 (459)
126 PRK04841 transcriptional regul 99.2 2.7E-08 5.9E-13 118.4 35.2 380 255-714 340-764 (903)
127 COG5010 TadD Flp pilus assembl 99.2 1.6E-09 3.5E-14 100.1 18.3 177 337-538 52-229 (257)
128 TIGR02552 LcrH_SycD type III s 99.2 3.6E-10 7.7E-15 100.0 12.5 111 465-615 5-115 (135)
129 PF04733 Coatomer_E: Coatomer 99.2 1.1E-09 2.4E-14 108.5 16.8 254 486-756 10-278 (290)
130 KOG3060 Uncharacterized conser 99.1 4.3E-08 9.2E-13 89.7 24.7 171 473-684 48-228 (289)
131 PRK15363 pathogenicity island 99.1 1.2E-09 2.6E-14 94.3 13.8 108 467-614 24-132 (157)
132 PRK15363 pathogenicity island 99.1 1.3E-09 2.7E-14 94.1 13.3 98 661-758 49-147 (157)
133 COG4783 Putative Zn-dependent 99.1 1.3E-08 2.8E-13 102.2 20.2 148 615-762 304-456 (484)
134 PLN03088 SGT1, suppressor of 99.1 1.3E-09 2.9E-14 112.4 13.6 104 660-763 15-119 (356)
135 PF04733 Coatomer_E: Coatomer 99.1 1.6E-08 3.4E-13 100.4 20.6 249 266-544 11-269 (290)
136 KOG0511 Ankyrin repeat protein 99.0 5E-10 1.1E-14 106.8 8.3 145 57-206 295-448 (516)
137 PF13525 YfiO: Outer membrane 99.0 1.9E-08 4.1E-13 95.2 18.4 177 255-531 4-198 (203)
138 PF13525 YfiO: Outer membrane 99.0 9.2E-08 2E-12 90.5 21.1 188 476-734 4-198 (203)
139 PRK10866 outer membrane biogen 99.0 9.4E-08 2E-12 92.5 21.3 202 475-740 30-238 (243)
140 COG4783 Putative Zn-dependent 99.0 8.3E-08 1.8E-12 96.5 21.2 130 473-642 302-433 (484)
141 PRK10866 outer membrane biogen 98.9 9.5E-08 2.1E-12 92.5 20.0 178 319-537 31-238 (243)
142 TIGR02795 tol_pal_ybgF tol-pal 98.9 2E-08 4.4E-13 86.5 13.5 113 617-756 2-118 (119)
143 PF13414 TPR_11: TPR repeat; P 98.9 3.5E-09 7.7E-14 80.7 7.7 67 476-542 2-69 (69)
144 COG4785 NlpI Lipoprotein NlpI, 98.9 7.9E-08 1.7E-12 85.6 16.7 198 476-714 64-270 (297)
145 PF13414 TPR_11: TPR repeat; P 98.9 3.6E-09 7.8E-14 80.7 7.2 66 680-745 2-69 (69)
146 KOG0543 FKBP-type peptidyl-pro 98.9 3E-08 6.4E-13 97.8 13.1 130 620-764 211-341 (397)
147 KOG1941 Acetylcholine receptor 98.9 1.2E-06 2.6E-11 84.2 23.1 246 353-646 7-275 (518)
148 PLN03088 SGT1, suppressor of 98.8 4.3E-08 9.4E-13 101.2 14.6 111 480-630 5-117 (356)
149 PF13432 TPR_16: Tetratricopep 98.8 1.9E-08 4E-13 75.6 7.9 64 685-748 1-65 (65)
150 KOG1941 Acetylcholine receptor 98.8 3.4E-06 7.3E-11 81.3 24.2 313 259-707 9-357 (518)
151 COG4235 Cytochrome c biogenesi 98.8 1.3E-07 2.7E-12 90.3 13.7 114 463-616 142-258 (287)
152 PF13432 TPR_16: Tetratricopep 98.8 3E-08 6.6E-13 74.4 7.7 64 481-544 1-64 (65)
153 PRK10153 DNA-binding transcrip 98.8 2E-07 4.4E-12 100.1 16.5 86 664-749 401-488 (517)
154 KOG4648 Uncharacterized conser 98.7 3.2E-08 6.8E-13 94.1 8.7 215 324-582 101-328 (536)
155 COG4785 NlpI Lipoprotein NlpI, 98.7 5.6E-07 1.2E-11 80.3 15.9 30 585-614 237-266 (297)
156 COG4235 Cytochrome c biogenesi 98.7 3.6E-07 7.9E-12 87.2 15.8 110 640-749 145-262 (287)
157 PRK10803 tol-pal system protei 98.7 2.3E-07 5.1E-12 90.3 14.6 114 618-758 143-261 (263)
158 KOG4648 Uncharacterized conser 98.7 1.1E-08 2.4E-13 97.1 5.1 231 480-760 100-347 (536)
159 CHL00033 ycf3 photosystem I as 98.7 4.1E-07 8.8E-12 83.6 14.6 77 477-553 35-115 (168)
160 PF12895 Apc3: Anaphase-promot 98.7 3.7E-08 8E-13 78.3 6.5 80 660-740 2-84 (84)
161 PRK02603 photosystem I assembl 98.7 4.5E-07 9.8E-12 83.6 14.5 70 475-544 33-105 (172)
162 PRK02603 photosystem I assembl 98.7 3.5E-07 7.6E-12 84.3 13.3 115 508-651 32-154 (172)
163 PF14938 SNAP: Soluble NSF att 98.7 1.1E-06 2.4E-11 88.0 17.9 221 478-759 36-279 (282)
164 PF14938 SNAP: Soluble NSF att 98.7 1.6E-06 3.5E-11 86.9 19.0 176 516-750 40-232 (282)
165 PRK11906 transcriptional regul 98.7 1.2E-06 2.5E-11 89.1 17.7 140 388-544 258-405 (458)
166 KOG0543 FKBP-type peptidyl-pro 98.7 6.7E-07 1.5E-11 88.4 15.3 148 256-418 208-359 (397)
167 cd00189 TPR Tetratricopeptide 98.7 2.9E-07 6.3E-12 75.5 11.0 96 479-614 2-97 (100)
168 KOG3081 Vesicle coat complex C 98.6 1.3E-05 2.8E-10 74.4 22.2 259 485-755 16-283 (299)
169 PF12895 Apc3: Anaphase-promot 98.6 1.1E-07 2.3E-12 75.6 7.8 81 490-611 2-84 (84)
170 KOG4234 TPR repeat-containing 98.6 2.2E-07 4.8E-12 81.7 10.0 118 619-761 97-215 (271)
171 PRK10153 DNA-binding transcrip 98.6 8.9E-07 1.9E-11 95.2 17.0 145 388-550 342-492 (517)
172 PRK15331 chaperone protein Sic 98.6 6.1E-07 1.3E-11 78.0 12.6 108 467-614 27-134 (165)
173 TIGR02795 tol_pal_ybgF tol-pal 98.6 4E-07 8.7E-12 78.3 11.8 101 320-420 2-111 (119)
174 PF09976 TPR_21: Tetratricopep 98.6 1.4E-06 3E-11 77.7 15.4 121 487-644 21-145 (145)
175 CHL00033 ycf3 photosystem I as 98.6 6.7E-07 1.4E-11 82.2 13.7 123 367-544 14-153 (168)
176 PF09976 TPR_21: Tetratricopep 98.6 1.1E-06 2.4E-11 78.3 14.6 80 661-741 62-145 (145)
177 KOG3617 WD40 and TPR repeat-co 98.6 3.6E-05 7.8E-10 82.0 26.7 66 675-740 1073-1171(1416)
178 KOG1070 rRNA processing protei 98.6 1.8E-05 3.9E-10 89.1 25.5 208 463-711 1444-1664(1710)
179 KOG0783 Uncharacterized conser 98.6 6.2E-08 1.3E-12 102.0 6.3 69 51-121 555-635 (1267)
180 PRK11906 transcriptional regul 98.6 2.4E-06 5.2E-11 86.8 17.4 167 324-538 259-434 (458)
181 KOG1070 rRNA processing protei 98.6 1.3E-05 2.7E-10 90.3 24.2 231 491-757 1438-1677(1710)
182 cd00189 TPR Tetratricopeptide 98.6 5.1E-07 1.1E-11 74.0 10.7 98 619-746 2-100 (100)
183 COG4700 Uncharacterized protei 98.6 1E-05 2.2E-10 70.6 18.1 150 586-763 90-247 (251)
184 KOG4234 TPR repeat-containing 98.5 2.1E-06 4.5E-11 75.7 13.3 107 255-384 94-200 (271)
185 KOG2053 Mitochondrial inherita 98.5 0.0028 6.1E-08 69.2 39.3 398 336-747 61-540 (932)
186 PF14559 TPR_19: Tetratricopep 98.5 1.9E-07 4.2E-12 70.8 6.2 66 692-757 2-68 (68)
187 PF13371 TPR_9: Tetratricopept 98.5 3.6E-07 7.7E-12 70.5 7.7 70 688-757 2-72 (73)
188 COG0457 NrfG FOG: TPR repeat [ 98.5 0.00012 2.6E-09 71.8 28.3 217 490-746 36-268 (291)
189 PRK15331 chaperone protein Sic 98.5 2.1E-06 4.5E-11 74.7 12.9 106 619-725 39-148 (165)
190 KOG3617 WD40 and TPR repeat-co 98.5 2.7E-05 5.8E-10 82.9 23.0 291 352-737 757-1103(1416)
191 COG4105 ComL DNA uptake lipopr 98.5 1.6E-05 3.5E-10 74.3 19.1 165 584-748 33-238 (254)
192 PRK10803 tol-pal system protei 98.5 2.7E-06 5.8E-11 82.9 14.7 68 352-419 142-214 (263)
193 COG3898 Uncharacterized membra 98.5 0.00045 9.7E-09 67.8 28.6 287 359-743 91-392 (531)
194 PF13512 TPR_18: Tetratricopep 98.5 4.4E-06 9.6E-11 71.1 13.2 112 616-754 9-139 (142)
195 KOG3081 Vesicle coat complex C 98.5 0.00011 2.4E-09 68.5 22.8 123 593-715 145-276 (299)
196 PF12688 TPR_5: Tetratrico pep 98.4 5.9E-06 1.3E-10 69.4 13.1 99 478-613 2-103 (120)
197 COG1729 Uncharacterized protei 98.4 4.5E-06 9.8E-11 78.9 13.6 111 620-757 144-258 (262)
198 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00027 5.8E-09 69.3 27.4 208 466-713 46-268 (291)
199 PF12688 TPR_5: Tetratrico pep 98.4 6.1E-06 1.3E-10 69.3 12.6 98 387-539 3-103 (120)
200 KOG2838 Uncharacterized conser 98.4 2.9E-07 6.3E-12 84.2 4.8 100 65-165 262-397 (401)
201 KOG3616 Selective LIM binding 98.4 0.0035 7.5E-08 66.5 34.1 333 354-737 663-1057(1636)
202 COG4105 ComL DNA uptake lipopr 98.4 6.9E-05 1.5E-09 70.2 19.8 173 476-651 33-238 (254)
203 PF14559 TPR_19: Tetratricopep 98.4 1.5E-06 3.3E-11 65.8 7.5 58 487-544 1-58 (68)
204 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 8.4E-06 1.8E-10 83.7 14.6 118 593-741 177-295 (395)
205 PF13371 TPR_9: Tetratricopept 98.3 2.7E-06 5.9E-11 65.5 7.9 61 484-544 2-62 (73)
206 KOG4555 TPR repeat-containing 98.3 6.3E-06 1.4E-10 67.3 10.0 89 659-747 55-148 (175)
207 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.2E-05 2.6E-10 82.6 14.4 109 569-707 183-294 (395)
208 KOG2716 Polymerase delta-inter 98.3 5.5E-06 1.2E-10 76.6 10.8 98 56-156 6-106 (230)
209 KOG1914 mRNA cleavage and poly 98.3 0.0067 1.5E-07 62.6 36.5 378 342-743 10-464 (656)
210 COG1729 Uncharacterized protei 98.3 1.3E-05 2.9E-10 75.7 12.6 68 477-544 178-248 (262)
211 COG4700 Uncharacterized protei 98.3 0.00012 2.7E-09 64.1 17.2 151 363-538 67-220 (251)
212 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 3.3E-06 7.2E-11 85.7 8.9 68 676-743 70-141 (453)
213 PF13512 TPR_18: Tetratricopep 98.2 2.6E-05 5.7E-10 66.5 12.8 83 352-437 10-96 (142)
214 KOG2471 TPR repeat-containing 98.2 0.00017 3.7E-09 72.6 19.9 150 586-742 510-683 (696)
215 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 4.6E-06 1E-10 84.7 9.2 70 472-541 70-142 (453)
216 KOG2471 TPR repeat-containing 98.2 0.0011 2.5E-08 66.9 24.7 140 468-629 231-381 (696)
217 KOG4555 TPR repeat-containing 98.2 6E-05 1.3E-09 61.7 12.4 103 480-618 46-148 (175)
218 KOG2300 Uncharacterized conser 98.1 0.014 3.1E-07 59.4 32.1 397 337-747 28-518 (629)
219 COG3898 Uncharacterized membra 98.1 0.0063 1.4E-07 60.1 27.5 185 337-544 103-296 (531)
220 PF02214 BTB_2: BTB/POZ domain 98.1 4.9E-06 1.1E-10 67.6 5.5 88 57-147 1-94 (94)
221 KOG3616 Selective LIM binding 98.1 0.022 4.8E-07 60.7 34.1 53 598-650 976-1028(1636)
222 KOG2796 Uncharacterized conser 98.1 0.00074 1.6E-08 62.8 19.8 220 476-714 68-319 (366)
223 PF13424 TPR_12: Tetratricopep 98.1 4.9E-06 1.1E-10 65.0 5.0 65 679-743 3-75 (78)
224 KOG2053 Mitochondrial inherita 98.1 0.0069 1.5E-07 66.3 29.7 227 363-650 20-259 (932)
225 KOG1987 Speckle-type POZ prote 98.1 2.2E-06 4.9E-11 87.0 3.3 138 55-196 99-243 (297)
226 KOG2300 Uncharacterized conser 98.0 0.023 5.1E-07 57.9 38.4 376 353-750 8-480 (629)
227 KOG1586 Protein required for f 98.0 0.00044 9.5E-09 63.1 16.2 181 570-761 29-244 (288)
228 KOG3473 RNA polymerase II tran 98.0 5.6E-05 1.2E-09 57.4 8.7 81 57-140 19-112 (112)
229 PF06552 TOM20_plant: Plant sp 98.0 3.4E-05 7.4E-10 67.8 8.7 86 633-718 7-117 (186)
230 PF13424 TPR_12: Tetratricopep 98.0 8.6E-06 1.9E-10 63.6 4.4 68 474-541 2-76 (78)
231 KOG2838 Uncharacterized conser 98.0 8.5E-06 1.8E-10 74.8 4.4 69 51-121 127-197 (401)
232 KOG0376 Serine-threonine phosp 97.9 1.9E-05 4.1E-10 80.0 6.8 104 661-764 18-122 (476)
233 PF06552 TOM20_plant: Plant sp 97.9 4.1E-05 8.8E-10 67.4 7.8 94 664-757 8-123 (186)
234 PF13431 TPR_17: Tetratricopep 97.8 1.5E-05 3.2E-10 49.9 2.9 33 340-372 1-33 (34)
235 KOG4642 Chaperone-dependent E3 97.8 6.5E-05 1.4E-09 68.6 7.1 93 326-418 16-111 (284)
236 PF13428 TPR_14: Tetratricopep 97.8 5.9E-05 1.3E-09 50.9 5.2 41 716-756 3-43 (44)
237 KOG2796 Uncharacterized conser 97.8 0.0028 6E-08 59.1 17.3 137 391-544 183-319 (366)
238 KOG0545 Aryl-hydrocarbon recep 97.7 0.00053 1.1E-08 63.0 12.2 72 679-750 228-300 (329)
239 PF13428 TPR_14: Tetratricopep 97.7 6.6E-05 1.4E-09 50.6 5.1 42 478-519 2-43 (44)
240 KOG1585 Protein required for f 97.7 0.0043 9.4E-08 57.2 17.9 127 482-643 115-253 (308)
241 PF13431 TPR_17: Tetratricopep 97.7 2.8E-05 6.1E-10 48.7 2.5 32 670-701 2-33 (34)
242 KOG4642 Chaperone-dependent E3 97.7 0.00024 5.2E-09 65.0 9.3 98 661-758 24-127 (284)
243 KOG0376 Serine-threonine phosp 97.7 9.9E-05 2.1E-09 74.9 7.1 95 326-420 10-107 (476)
244 KOG4507 Uncharacterized conser 97.7 0.0069 1.5E-07 62.9 20.0 98 661-758 621-720 (886)
245 PF10300 DUF3808: Protein of u 97.6 0.097 2.1E-06 56.4 29.0 157 589-745 192-378 (468)
246 PF00515 TPR_1: Tetratricopept 97.6 0.00011 2.5E-09 46.3 4.2 34 256-289 1-34 (34)
247 KOG1585 Protein required for f 97.6 0.011 2.3E-07 54.7 18.1 202 477-738 31-251 (308)
248 PF05843 Suf: Suppressor of fo 97.6 0.0014 3.1E-08 65.4 13.9 87 666-752 55-145 (280)
249 KOG0545 Aryl-hydrocarbon recep 97.5 0.0019 4.2E-08 59.4 12.6 69 476-544 229-297 (329)
250 PF13281 DUF4071: Domain of un 97.5 0.017 3.7E-07 58.6 20.7 173 585-758 141-349 (374)
251 PF00515 TPR_1: Tetratricopept 97.5 0.00014 3.1E-09 45.8 3.9 32 682-713 2-33 (34)
252 KOG1586 Protein required for f 97.5 0.08 1.7E-06 48.9 23.4 106 586-714 114-228 (288)
253 KOG0985 Vesicle coat protein c 97.5 0.28 6E-06 55.0 33.2 231 475-741 1102-1339(1666)
254 PF07719 TPR_2: Tetratricopept 97.5 0.00021 4.6E-09 45.0 4.4 34 256-289 1-34 (34)
255 KOG0551 Hsp90 co-chaperone CNS 97.5 0.00093 2E-08 64.4 10.2 104 252-379 77-180 (390)
256 PF04184 ST7: ST7 protein; In 97.5 0.0081 1.8E-07 61.7 17.2 166 451-656 176-385 (539)
257 KOG0985 Vesicle coat protein c 97.4 0.35 7.6E-06 54.2 38.6 234 319-607 1103-1376(1666)
258 COG2976 Uncharacterized protei 97.4 0.0096 2.1E-07 53.3 15.2 88 659-748 101-193 (207)
259 KOG1914 mRNA cleavage and poly 97.4 0.22 4.8E-06 51.9 37.7 409 318-745 18-503 (656)
260 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00079 1.7E-08 46.8 6.7 49 716-764 3-51 (53)
261 PF10345 Cohesin_load: Cohesin 97.4 0.37 8E-06 54.3 40.8 442 242-742 44-605 (608)
262 KOG1308 Hsp70-interacting prot 97.4 0.0001 2.3E-09 71.2 2.9 87 660-746 127-214 (377)
263 PF05843 Suf: Suppressor of fo 97.4 0.0062 1.3E-07 60.8 15.7 137 479-655 3-145 (280)
264 PF07719 TPR_2: Tetratricopept 97.4 0.00036 7.7E-09 44.0 4.4 32 512-543 2-33 (34)
265 KOG2610 Uncharacterized conser 97.3 0.019 4.2E-07 55.6 16.9 125 390-538 108-236 (491)
266 KOG1550 Extracellular protein 97.3 0.054 1.2E-06 59.8 23.2 260 475-747 242-542 (552)
267 PF04184 ST7: ST7 protein; In 97.3 0.012 2.5E-07 60.7 16.2 180 485-682 176-381 (539)
268 COG3118 Thioredoxin domain-con 97.2 0.017 3.7E-07 55.5 15.9 158 355-536 137-297 (304)
269 smart00512 Skp1 Found in Skp1 97.2 0.0017 3.8E-08 53.5 8.3 82 56-140 3-104 (104)
270 KOG1258 mRNA processing protei 97.2 0.39 8.4E-06 51.1 37.3 174 586-759 298-486 (577)
271 KOG2610 Uncharacterized conser 97.2 0.021 4.5E-07 55.4 16.3 151 591-741 109-274 (491)
272 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0021 4.5E-08 62.1 9.2 91 620-710 84-182 (390)
273 KOG3364 Membrane protein invol 97.2 0.0065 1.4E-07 50.6 10.4 85 680-764 31-121 (149)
274 PF02259 FAT: FAT domain; Int 97.1 0.13 2.8E-06 53.8 23.6 157 585-746 146-341 (352)
275 PF11822 DUF3342: Domain of un 97.1 0.00063 1.4E-08 66.1 5.4 91 64-156 14-105 (317)
276 KOG1308 Hsp70-interacting prot 97.1 0.0013 2.7E-08 63.9 6.6 95 262-386 120-216 (377)
277 COG2976 Uncharacterized protei 97.1 0.015 3.1E-07 52.2 12.5 65 355-419 129-193 (207)
278 PF07079 DUF1347: Protein of u 97.0 0.48 1E-05 48.4 40.8 52 689-740 470-521 (549)
279 PF10345 Cohesin_load: Cohesin 97.0 0.87 1.9E-05 51.3 33.0 51 680-730 403-465 (608)
280 KOG1258 mRNA processing protei 97.0 0.62 1.3E-05 49.6 27.0 94 659-752 309-404 (577)
281 KOG1550 Extracellular protein 97.0 0.19 4.1E-06 55.6 24.0 171 337-539 231-425 (552)
282 PF10300 DUF3808: Protein of u 97.0 0.46 1E-05 51.3 26.1 121 490-646 246-376 (468)
283 PF13181 TPR_8: Tetratricopept 97.0 0.001 2.3E-08 41.8 3.6 33 256-288 1-33 (34)
284 KOG0530 Protein farnesyltransf 97.0 0.32 6.9E-06 45.9 20.6 189 337-544 97-302 (318)
285 KOG1778 CREB binding protein/P 96.9 0.00054 1.2E-08 67.5 2.4 145 55-203 27-173 (319)
286 KOG2714 SETA binding protein S 96.9 0.0041 8.9E-08 62.1 8.1 91 56-150 12-110 (465)
287 PF13281 DUF4071: Domain of un 96.9 0.14 2.9E-06 52.3 19.1 190 477-716 141-340 (374)
288 PF03931 Skp1_POZ: Skp1 family 96.8 0.009 1.9E-07 43.6 7.8 55 57-116 3-58 (62)
289 COG0790 FOG: TPR repeat, SEL1 96.8 0.26 5.6E-06 49.9 21.5 174 570-747 56-270 (292)
290 PF03704 BTAD: Bacterial trans 96.8 0.026 5.6E-07 50.2 12.4 111 623-741 12-123 (146)
291 KOG1724 SCF ubiquitin ligase, 96.7 0.016 3.4E-07 51.2 10.1 92 62-156 13-128 (162)
292 PF13181 TPR_8: Tetratricopept 96.7 0.0029 6.3E-08 39.7 4.2 32 512-543 2-33 (34)
293 PF07707 BACK: BTB And C-termi 96.7 0.0019 4.2E-08 53.5 4.2 40 161-200 1-40 (103)
294 PF03704 BTAD: Bacterial trans 96.7 0.051 1.1E-06 48.3 13.7 113 391-539 12-124 (146)
295 COG2909 MalT ATP-dependent tra 96.6 1.7 3.7E-05 48.7 29.0 270 256-541 347-648 (894)
296 KOG2041 WD40 repeat protein [G 96.6 0.67 1.4E-05 49.8 22.4 233 467-740 683-936 (1189)
297 COG3118 Thioredoxin domain-con 96.6 0.12 2.6E-06 50.0 15.3 125 259-383 137-267 (304)
298 PRK10941 hypothetical protein; 96.5 0.022 4.7E-07 55.7 10.6 82 682-763 182-264 (269)
299 PF08424 NRDE-2: NRDE-2, neces 96.5 0.18 3.9E-06 51.5 17.7 151 463-614 5-183 (321)
300 PF13176 TPR_7: Tetratricopept 96.5 0.0041 8.8E-08 39.6 3.7 28 258-285 1-28 (36)
301 KOG0530 Protein farnesyltransf 96.4 0.86 1.9E-05 43.2 22.5 227 487-754 53-309 (318)
302 KOG4507 Uncharacterized conser 96.4 0.61 1.3E-05 49.2 20.3 98 621-718 610-713 (886)
303 PF08631 SPO22: Meiosis protei 96.4 0.86 1.9E-05 45.5 21.6 162 363-539 4-185 (278)
304 KOG0511 Ankyrin repeat protein 96.4 0.004 8.7E-08 60.7 4.6 115 56-184 151-266 (516)
305 COG2909 MalT ATP-dependent tra 96.3 2.5 5.4E-05 47.4 30.1 122 476-632 414-552 (894)
306 KOG0890 Protein kinase of the 96.3 5 0.00011 50.2 29.7 127 585-711 1670-1834(2382)
307 COG0790 FOG: TPR repeat, SEL1 96.2 0.8 1.7E-05 46.3 20.9 175 489-712 53-268 (292)
308 PF08631 SPO22: Meiosis protei 96.2 1.4 3E-05 44.0 21.7 227 488-741 4-273 (278)
309 PF02259 FAT: FAT domain; Int 96.1 2.1 4.5E-05 44.6 26.0 147 473-629 142-304 (352)
310 KOG1665 AFH1-interacting prote 96.1 0.022 4.8E-07 51.4 7.4 92 55-149 9-105 (302)
311 PF13174 TPR_6: Tetratricopept 96.1 0.009 1.9E-07 37.1 3.7 30 717-746 3-32 (33)
312 KOG0890 Protein kinase of the 96.1 6.1 0.00013 49.5 30.0 104 650-755 1669-1796(2382)
313 PF13174 TPR_6: Tetratricopept 96.1 0.015 3.3E-07 36.0 4.6 33 618-650 1-33 (33)
314 PF13176 TPR_7: Tetratricopept 95.9 0.011 2.4E-07 37.6 3.4 25 684-708 2-26 (36)
315 PF04910 Tcf25: Transcriptiona 95.9 0.51 1.1E-05 48.8 17.4 149 467-653 30-229 (360)
316 smart00875 BACK BTB And C-term 95.8 0.0088 1.9E-07 49.2 3.6 40 161-200 1-40 (101)
317 PF04781 DUF627: Protein of un 95.8 0.064 1.4E-06 43.5 7.9 46 665-710 62-107 (111)
318 COG4649 Uncharacterized protei 95.6 0.2 4.4E-06 44.0 10.9 46 678-723 164-209 (221)
319 COG5107 RNA14 Pre-mRNA 3'-end 95.6 3.3 7.2E-05 42.5 32.4 380 340-743 30-495 (660)
320 KOG3824 Huntingtin interacting 95.4 0.042 9.2E-07 52.6 6.8 55 660-714 129-183 (472)
321 PF14561 TPR_20: Tetratricopep 95.4 0.18 3.8E-06 40.1 9.2 74 463-536 8-83 (90)
322 PF04910 Tcf25: Transcriptiona 95.4 0.66 1.4E-05 48.0 15.9 76 344-419 32-138 (360)
323 PF09613 HrpB1_HrpK: Bacterial 95.3 0.79 1.7E-05 40.4 13.7 80 479-558 12-92 (160)
324 PF09986 DUF2225: Uncharacteri 95.3 0.32 6.9E-06 46.0 12.2 96 489-614 89-194 (214)
325 PF14561 TPR_20: Tetratricopep 95.2 0.19 4E-06 40.0 8.9 49 337-385 7-55 (90)
326 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.085 1.8E-06 36.7 6.0 34 387-420 3-36 (53)
327 PF09986 DUF2225: Uncharacteri 95.2 0.4 8.7E-06 45.3 12.6 68 681-748 118-199 (214)
328 KOG2041 WD40 repeat protein [G 95.0 6.8 0.00015 42.6 29.8 196 357-611 739-936 (1189)
329 smart00028 TPR Tetratricopepti 94.9 0.043 9.4E-07 33.3 3.8 28 719-746 6-33 (34)
330 PF12968 DUF3856: Domain of Un 94.8 0.29 6.2E-06 40.0 8.7 104 391-540 15-129 (144)
331 KOG1464 COP9 signalosome, subu 94.8 1.6 3.4E-05 41.5 14.8 61 481-541 149-221 (440)
332 KOG3783 Uncharacterized conser 94.7 5.1 0.00011 42.4 19.8 83 337-419 252-337 (546)
333 TIGR02561 HrpB1_HrpK type III 94.7 1.3 2.8E-05 38.3 12.9 106 481-612 14-120 (153)
334 smart00028 TPR Tetratricopepti 94.6 0.052 1.1E-06 33.0 3.6 31 513-543 3-33 (34)
335 PF12968 DUF3856: Domain of Un 94.6 1 2.2E-05 37.0 11.3 63 681-743 55-129 (144)
336 KOG3824 Huntingtin interacting 94.6 0.12 2.5E-06 49.7 7.1 71 482-552 121-192 (472)
337 PF09613 HrpB1_HrpK: Bacterial 94.4 1.4 3E-05 38.9 12.8 98 661-760 24-122 (160)
338 COG4976 Predicted methyltransf 94.4 0.076 1.7E-06 48.8 5.2 54 661-714 9-62 (287)
339 PF13374 TPR_10: Tetratricopep 94.3 0.081 1.7E-06 34.8 4.0 30 256-285 2-31 (42)
340 COG5201 SKP1 SCF ubiquitin lig 94.2 0.61 1.3E-05 38.2 9.4 97 55-156 2-123 (158)
341 KOG1464 COP9 signalosome, subu 94.2 5.1 0.00011 38.2 16.6 219 336-563 45-291 (440)
342 PRK10941 hypothetical protein; 94.1 0.45 9.7E-06 46.7 10.3 65 480-544 184-248 (269)
343 KOG3807 Predicted membrane pro 93.9 5.4 0.00012 39.2 16.8 27 588-614 278-304 (556)
344 PF04781 DUF627: Protein of un 93.9 1.5 3.3E-05 35.8 11.2 106 391-540 2-107 (111)
345 COG5107 RNA14 Pre-mRNA 3'-end 93.8 9.4 0.0002 39.4 33.9 49 244-292 30-78 (660)
346 COG4976 Predicted methyltransf 93.7 0.11 2.5E-06 47.7 5.0 59 486-544 4-62 (287)
347 KOG2396 HAT (Half-A-TPR) repea 93.7 0.79 1.7E-05 47.6 11.3 84 669-752 93-178 (568)
348 KOG2715 Uncharacterized conser 93.7 0.49 1.1E-05 40.9 8.3 99 55-156 21-123 (210)
349 PF11207 DUF2989: Protein of u 93.4 4.6 0.0001 37.2 14.6 93 640-734 100-198 (203)
350 KOG3783 Uncharacterized conser 93.3 13 0.00028 39.6 19.8 240 467-748 257-525 (546)
351 PF08424 NRDE-2: NRDE-2, neces 93.3 6 0.00013 40.5 17.5 82 339-420 6-100 (321)
352 PF01466 Skp1: Skp1 family, di 93.0 0.37 7.9E-06 37.1 6.2 51 123-173 11-63 (78)
353 KOG1538 Uncharacterized conser 92.7 7.4 0.00016 42.0 16.7 102 473-612 743-844 (1081)
354 COG3914 Spy Predicted O-linked 92.5 3.5 7.6E-05 44.0 14.2 122 636-757 50-185 (620)
355 KOG3364 Membrane protein invol 92.0 1.7 3.8E-05 36.7 9.1 69 352-420 32-106 (149)
356 PF10602 RPN7: 26S proteasome 92.0 2.4 5.2E-05 38.8 11.3 102 586-711 37-143 (177)
357 COG4649 Uncharacterized protei 91.8 9 0.0002 34.1 15.4 57 359-415 65-124 (221)
358 COG2912 Uncharacterized conser 91.6 1.1 2.3E-05 43.3 8.7 78 684-761 184-262 (269)
359 KOG1538 Uncharacterized conser 91.4 18 0.00038 39.3 17.8 109 592-707 710-830 (1081)
360 PF13374 TPR_10: Tetratricopep 91.4 0.3 6.5E-06 32.0 3.6 28 683-710 4-31 (42)
361 PF10602 RPN7: 26S proteasome 91.3 3.3 7.3E-05 37.9 11.5 100 618-744 37-143 (177)
362 KOG1310 WD40 repeat protein [G 91.3 0.81 1.8E-05 47.7 7.9 85 631-715 388-479 (758)
363 COG5191 Uncharacterized conser 91.2 0.54 1.2E-05 45.5 6.2 89 670-758 96-186 (435)
364 TIGR02561 HrpB1_HrpK type III 90.9 1.7 3.8E-05 37.6 8.3 72 660-731 23-95 (153)
365 PF10516 SHNi-TPR: SHNi-TPR; 90.2 0.4 8.7E-06 30.6 3.0 29 257-285 2-30 (38)
366 PF11207 DUF2989: Protein of u 90.1 7 0.00015 36.0 12.0 80 451-531 114-198 (203)
367 PF04053 Coatomer_WDAD: Coatom 89.9 14 0.00029 39.6 16.0 126 488-642 272-398 (443)
368 KOG3840 Uncharaterized conserv 89.9 0.48 1E-05 45.2 4.6 86 54-141 95-185 (438)
369 PRK15180 Vi polysaccharide bio 89.4 2.2 4.7E-05 44.0 9.0 123 364-510 301-424 (831)
370 KOG1310 WD40 repeat protein [G 88.9 1.7 3.8E-05 45.3 8.1 83 337-419 393-479 (758)
371 PF10516 SHNi-TPR: SHNi-TPR; 88.8 0.76 1.6E-05 29.4 3.5 29 682-710 2-30 (38)
372 PF07721 TPR_4: Tetratricopept 88.3 0.74 1.6E-05 26.5 3.0 23 513-535 3-25 (26)
373 PF07721 TPR_4: Tetratricopept 88.3 0.76 1.7E-05 26.5 3.1 23 683-705 3-25 (26)
374 KOG2422 Uncharacterized conser 88.2 30 0.00066 37.2 16.4 149 598-746 251-451 (665)
375 PF12862 Apc5: Anaphase-promot 88.1 2.2 4.8E-05 34.2 6.8 58 487-544 8-74 (94)
376 COG4941 Predicted RNA polymera 88.0 27 0.00058 34.8 14.9 91 669-761 318-412 (415)
377 KOG0546 HSP90 co-chaperone CPR 88.0 0.84 1.8E-05 45.3 4.9 83 681-763 275-358 (372)
378 PF04053 Coatomer_WDAD: Coatom 87.8 8.9 0.00019 41.0 12.9 100 595-707 271-373 (443)
379 KOG2422 Uncharacterized conser 87.6 40 0.00086 36.4 16.8 74 346-419 278-377 (665)
380 COG5191 Uncharacterized conser 87.3 1.1 2.3E-05 43.5 5.1 83 465-547 95-179 (435)
381 PRK15180 Vi polysaccharide bio 87.0 43 0.00093 35.1 23.3 108 332-445 301-411 (831)
382 PF10579 Rapsyn_N: Rapsyn N-te 86.7 6.2 0.00013 30.0 7.7 59 355-413 9-71 (80)
383 PF12862 Apc5: Anaphase-promot 86.2 4 8.6E-05 32.8 7.3 55 692-746 9-73 (94)
384 KOG4814 Uncharacterized conser 86.1 6.9 0.00015 42.2 10.5 99 389-539 358-456 (872)
385 COG3629 DnrI DNA-binding trans 85.8 7.9 0.00017 38.0 10.3 65 476-540 152-216 (280)
386 COG3629 DnrI DNA-binding trans 85.7 6.9 0.00015 38.4 9.8 61 682-742 154-215 (280)
387 PF07720 TPR_3: Tetratricopept 85.1 2.6 5.6E-05 26.6 4.4 21 513-533 3-23 (36)
388 KOG0529 Protein geranylgeranyl 84.9 50 0.0011 34.1 15.5 96 664-759 92-194 (421)
389 KOG4014 Uncharacterized conser 84.8 30 0.00064 31.3 14.0 66 475-541 32-103 (248)
390 KOG0529 Protein geranylgeranyl 84.2 20 0.00042 36.9 12.4 123 632-754 90-235 (421)
391 KOG3807 Predicted membrane pro 83.7 40 0.00086 33.5 13.7 33 682-714 276-308 (556)
392 PF07720 TPR_3: Tetratricopept 83.3 2.7 5.9E-05 26.5 3.9 20 684-703 4-23 (36)
393 COG2912 Uncharacterized conser 83.1 7 0.00015 37.9 8.5 63 482-544 186-248 (269)
394 TIGR03504 FimV_Cterm FimV C-te 82.2 2.6 5.7E-05 28.0 3.7 24 719-742 4-27 (44)
395 PF00244 14-3-3: 14-3-3 protei 82.2 50 0.0011 31.9 14.2 63 355-417 4-69 (236)
396 PF10579 Rapsyn_N: Rapsyn N-te 81.6 9.6 0.00021 29.0 6.9 57 686-742 11-71 (80)
397 COG3914 Spy Predicted O-linked 81.4 22 0.00047 38.4 11.9 110 472-616 60-173 (620)
398 KOG1839 Uncharacterized protei 81.2 31 0.00066 41.1 14.0 162 479-644 934-1126(1236)
399 smart00386 HAT HAT (Half-A-TPR 81.0 3.7 8.1E-05 24.7 4.1 31 728-758 1-31 (33)
400 KOG1463 26S proteasome regulat 80.0 70 0.0015 32.2 22.8 265 481-746 8-319 (411)
401 cd02682 MIT_AAA_Arch MIT: doma 80.0 13 0.00027 28.2 7.1 22 687-708 12-33 (75)
402 PF00244 14-3-3: 14-3-3 protei 79.9 46 0.001 32.2 13.1 156 588-743 4-198 (236)
403 PRK13184 pknD serine/threonine 79.7 1.4E+02 0.003 35.4 27.8 333 392-742 482-868 (932)
404 KOG4814 Uncharacterized conser 79.3 1.1E+02 0.0023 33.8 19.7 86 659-744 366-458 (872)
405 PF11822 DUF3342: Domain of un 78.3 0.78 1.7E-05 45.2 0.4 46 153-199 70-115 (317)
406 KOG2723 Uncharacterized conser 77.7 8.1 0.00018 36.3 6.8 97 53-153 6-108 (221)
407 TIGR03504 FimV_Cterm FimV C-te 77.7 6.8 0.00015 26.1 4.6 25 515-539 3-27 (44)
408 KOG2581 26S proteasome regulat 77.6 92 0.002 32.2 14.9 34 477-510 247-280 (493)
409 PF15015 NYD-SP12_N: Spermatog 76.6 35 0.00075 35.2 11.1 26 260-285 180-205 (569)
410 COG4941 Predicted RNA polymera 75.9 91 0.002 31.3 14.2 181 336-544 214-398 (415)
411 COG3014 Uncharacterized protei 75.8 77 0.0017 31.8 12.9 171 465-658 43-254 (449)
412 COG5159 RPN6 26S proteasome re 75.7 84 0.0018 30.7 21.0 266 481-746 7-317 (421)
413 KOG1463 26S proteasome regulat 75.5 94 0.002 31.3 20.1 58 481-538 132-195 (411)
414 PF10373 EST1_DNA_bind: Est1 D 75.4 11 0.00023 37.7 7.8 61 666-726 1-62 (278)
415 COG3947 Response regulator con 75.2 11 0.00025 36.5 7.1 58 684-741 282-340 (361)
416 PRK11619 lytic murein transgly 74.9 1.6E+02 0.0034 33.6 39.9 135 596-740 323-465 (644)
417 PF12854 PPR_1: PPR repeat 74.9 7.9 0.00017 24.0 4.2 29 711-739 4-32 (34)
418 PHA02537 M terminase endonucle 74.3 58 0.0013 31.1 11.5 47 716-763 170-226 (230)
419 PF13041 PPR_2: PPR repeat fam 73.7 13 0.00029 25.3 5.6 38 681-718 3-42 (50)
420 PF10373 EST1_DNA_bind: Est1 D 72.3 13 0.00028 37.1 7.5 61 700-760 1-62 (278)
421 PF15015 NYD-SP12_N: Spermatog 72.1 15 0.00033 37.7 7.4 58 481-538 232-289 (569)
422 KOG1839 Uncharacterized protei 71.5 24 0.00053 41.9 9.9 137 585-743 973-1128(1236)
423 KOG2063 Vacuolar assembly/sort 70.8 2.2E+02 0.0047 33.4 18.8 121 479-628 506-637 (877)
424 PF12854 PPR_1: PPR repeat 70.6 10 0.00022 23.5 3.9 29 382-410 4-32 (34)
425 COG4455 ImpE Protein of avirul 70.2 22 0.00048 33.2 7.4 55 660-714 14-68 (273)
426 PF07079 DUF1347: Protein of u 70.1 1.5E+02 0.0033 31.3 35.9 95 663-760 396-507 (549)
427 PF00651 BTB: BTB/POZ domain; 70.0 6.5 0.00014 32.5 4.0 30 158-187 81-110 (111)
428 COG3947 Response regulator con 69.6 18 0.00038 35.3 7.0 61 479-539 281-341 (361)
429 smart00386 HAT HAT (Half-A-TPR 69.4 10 0.00023 22.6 3.9 29 491-519 1-29 (33)
430 PF10255 Paf67: RNA polymerase 68.5 8.9 0.00019 40.0 5.2 60 480-539 125-192 (404)
431 PF14863 Alkyl_sulf_dimr: Alky 67.9 37 0.00079 29.6 8.1 49 715-763 71-119 (141)
432 PF04190 DUF410: Protein of un 66.0 1.4E+02 0.0031 29.4 18.4 27 509-535 88-114 (260)
433 COG4455 ImpE Protein of avirul 66.0 45 0.00098 31.2 8.5 60 485-544 9-68 (273)
434 cd02682 MIT_AAA_Arch MIT: doma 65.4 34 0.00075 25.9 6.4 30 256-285 6-35 (75)
435 COG1747 Uncharacterized N-term 65.3 2E+02 0.0043 30.9 18.6 79 626-714 214-292 (711)
436 PRK13184 pknD serine/threonine 65.2 3E+02 0.0064 32.8 33.5 84 337-420 494-587 (932)
437 KOG2396 HAT (Half-A-TPR) repea 64.9 2E+02 0.0044 30.8 39.4 85 678-762 457-544 (568)
438 PF04190 DUF410: Protein of un 64.6 1.5E+02 0.0032 29.2 14.7 65 679-743 88-170 (260)
439 KOG4151 Myosin assembly protei 63.5 27 0.00059 39.0 7.9 81 681-761 91-174 (748)
440 PRK11619 lytic murein transgly 63.5 2.7E+02 0.0058 31.7 33.4 309 353-708 34-373 (644)
441 PF11846 DUF3366: Domain of un 63.0 29 0.00062 32.4 7.3 50 697-746 127-176 (193)
442 PF10255 Paf67: RNA polymerase 61.8 22 0.00048 37.1 6.6 59 354-413 124-192 (404)
443 KOG2114 Vacuolar assembly/sort 60.3 2.5E+02 0.0054 32.2 14.3 237 485-749 342-596 (933)
444 KOG0546 HSP90 co-chaperone CPR 60.1 20 0.00044 36.0 5.6 117 260-387 226-344 (372)
445 KOG0276 Vesicle coat complex C 59.8 67 0.0015 34.9 9.6 30 585-614 666-695 (794)
446 smart00299 CLH Clathrin heavy 59.0 1.2E+02 0.0026 26.2 13.2 49 486-535 16-64 (140)
447 KOG2581 26S proteasome regulat 58.5 2.3E+02 0.0051 29.4 16.5 66 479-544 211-280 (493)
448 PF09670 Cas_Cas02710: CRISPR- 57.6 2.3E+02 0.005 29.8 13.4 61 480-540 134-198 (379)
449 PF11817 Foie-gras_1: Foie gra 57.4 42 0.00092 32.8 7.6 61 681-741 178-245 (247)
450 KOG4279 Serine/threonine prote 56.5 40 0.00086 37.5 7.4 56 659-714 255-320 (1226)
451 PF13041 PPR_2: PPR repeat fam 56.0 28 0.0006 23.7 4.4 33 712-744 1-33 (50)
452 COG5187 RPN7 26S proteasome re 55.8 1.7E+02 0.0036 28.9 10.6 66 585-650 115-188 (412)
453 KOG0686 COP9 signalosome, subu 55.7 51 0.0011 34.0 7.6 101 586-708 151-256 (466)
454 PF01535 PPR: PPR repeat; Int 55.5 19 0.00041 21.1 3.2 25 620-644 3-27 (31)
455 PF09670 Cas_Cas02710: CRISPR- 55.5 2.7E+02 0.0059 29.2 13.7 28 258-285 133-160 (379)
456 PF12739 TRAPPC-Trs85: ER-Golg 54.9 2.7E+02 0.0059 29.7 13.8 26 589-614 374-399 (414)
457 PF11817 Foie-gras_1: Foie gra 53.7 72 0.0016 31.1 8.5 76 568-643 158-244 (247)
458 KOG0687 26S proteasome regulat 53.4 1.1E+02 0.0023 30.7 9.2 102 254-382 102-211 (393)
459 KOG4521 Nuclear pore complex, 52.8 4.7E+02 0.01 31.5 15.1 170 257-448 921-1125(1480)
460 cd02680 MIT_calpain7_2 MIT: do 51.8 24 0.00052 26.8 3.6 33 662-709 2-34 (75)
461 KOG2075 Topoisomerase TOP1-int 51.6 17 0.00037 37.9 3.8 43 155-201 185-227 (521)
462 cd02683 MIT_1 MIT: domain cont 50.8 50 0.0011 25.2 5.4 21 688-708 13-33 (77)
463 PF07707 BACK: BTB And C-termi 50.5 23 0.0005 28.7 4.0 28 129-156 2-29 (103)
464 PF04212 MIT: MIT (microtubule 50.3 37 0.00079 25.2 4.6 30 256-285 5-34 (69)
465 cd02681 MIT_calpain7_1 MIT: do 48.8 38 0.00082 25.8 4.4 31 255-285 5-35 (76)
466 TIGR00756 PPR pentatricopeptid 48.5 44 0.00095 20.0 4.2 26 684-709 3-28 (35)
467 PF14863 Alkyl_sulf_dimr: Alky 47.7 52 0.0011 28.7 5.7 51 476-526 69-119 (141)
468 PF05053 Menin: Menin; InterP 47.6 1.4E+02 0.003 32.4 9.6 42 337-378 298-344 (618)
469 smart00671 SEL1 Sel1-like repe 47.3 36 0.00079 20.8 3.6 29 258-286 3-35 (36)
470 PF02064 MAS20: MAS20 protein 47.1 44 0.00095 28.2 4.9 37 719-755 68-104 (121)
471 cd02681 MIT_calpain7_1 MIT: do 46.9 27 0.00058 26.6 3.3 19 691-709 16-34 (76)
472 KOG2114 Vacuolar assembly/sort 46.7 5.1E+02 0.011 29.9 19.4 58 361-419 343-403 (933)
473 PF11846 DUF3366: Domain of un 46.4 50 0.0011 30.7 5.9 52 368-419 127-178 (193)
474 KOG4279 Serine/threonine prote 45.0 3E+02 0.0065 31.1 11.7 69 490-558 256-334 (1226)
475 KOG4014 Uncharacterized conser 45.0 2.5E+02 0.0053 25.7 14.0 33 509-541 32-65 (248)
476 PF04212 MIT: MIT (microtubule 45.0 1.3E+02 0.0027 22.3 6.8 22 688-709 12-33 (69)
477 PF08311 Mad3_BUB1_I: Mad3/BUB 44.6 2E+02 0.0043 24.5 13.5 79 564-644 42-126 (126)
478 PF08238 Sel1: Sel1 repeat; I 43.6 54 0.0012 20.5 4.1 30 257-286 2-38 (39)
479 cd02683 MIT_1 MIT: domain cont 42.8 49 0.0011 25.3 4.2 30 256-285 6-35 (77)
480 smart00875 BACK BTB And C-term 42.2 76 0.0016 25.3 5.8 28 129-156 2-29 (101)
481 COG1747 Uncharacterized N-term 41.9 4.8E+02 0.01 28.2 23.1 59 689-747 213-292 (711)
482 PF14929 TAF1_subA: TAF RNA Po 41.4 4.8E+02 0.01 28.9 13.0 92 665-759 362-466 (547)
483 PF13812 PPR_3: Pentatricopept 41.4 65 0.0014 19.2 4.1 27 619-645 3-29 (34)
484 COG5187 RPN7 26S proteasome re 41.1 2.1E+02 0.0046 28.2 8.9 102 254-382 113-222 (412)
485 smart00299 CLH Clathrin heavy 40.0 1.5E+02 0.0033 25.6 7.7 115 626-756 16-133 (140)
486 KOG3342 Signal peptidase I [In 40.0 16 0.00034 31.5 1.2 18 56-73 82-101 (180)
487 KOG0276 Vesicle coat complex C 39.2 1.7E+02 0.0037 32.0 8.7 111 618-740 615-747 (794)
488 PF07163 Pex26: Pex26 protein; 38.7 4E+02 0.0087 26.3 12.8 79 659-738 95-182 (309)
489 COG5536 BET4 Protein prenyltra 37.9 3.6E+02 0.0077 26.6 9.8 91 664-754 91-190 (328)
490 COG5159 RPN6 26S proteasome re 37.5 4.2E+02 0.009 26.2 22.0 25 590-614 211-235 (421)
491 smart00745 MIT Microtubule Int 36.9 77 0.0017 24.1 4.6 31 255-285 7-37 (77)
492 KOG0128 RNA-binding protein SA 36.8 7.2E+02 0.016 28.7 25.2 285 463-764 99-397 (881)
493 PF02184 HAT: HAT (Half-A-TPR) 36.6 73 0.0016 19.6 3.3 27 729-756 2-28 (32)
494 KOG0292 Vesicle coat complex C 36.6 4.3E+02 0.0094 30.6 11.5 46 488-538 654-699 (1202)
495 PHA02713 hypothetical protein; 36.4 39 0.00085 37.7 4.1 34 155-189 91-124 (557)
496 PF01466 Skp1: Skp1 family, di 36.1 77 0.0017 24.3 4.5 38 149-189 7-44 (78)
497 COG4259 Uncharacterized protei 35.6 1.8E+02 0.0038 23.5 6.2 36 715-750 72-108 (121)
498 cd02677 MIT_SNX15 MIT: domain 35.6 75 0.0016 24.2 4.2 30 256-285 6-35 (75)
499 PHA02790 Kelch-like protein; P 35.5 34 0.00074 37.4 3.4 35 154-189 87-121 (480)
500 PHA03098 kelch-like protein; P 35.5 39 0.00085 37.6 4.0 35 154-189 72-106 (534)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-46 Score=370.86 Aligned_cols=459 Identities=16% Similarity=0.155 Sum_probs=348.9
Q ss_pred ccchhhHHHHHHHHhhcchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhH--HHHHHHHhccHHHH--
Q 004243 232 DRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAG--LARAKYKVGQQYSA-- 307 (766)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--l~~~~~~~~~a~~~-- 307 (766)
...+.....+++++......+. ....++...++.|+|.+|++....+...+|.+.... +...+.+......+
T Consensus 28 ~~~s~~s~~v~qq~~~t~~~~~----~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a 103 (966)
T KOG4626|consen 28 SVSSSGSSSVLQQFNKTHEGSD----DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSA 103 (966)
T ss_pred CcccccchHHHHHhccCCccch----hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhh
Confidence 3344444455665555443332 355688888999999999999999999988876551 12222222221111
Q ss_pred HH-HHhhhccCCCchhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 308 YK-LINSIISEHKPTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 384 (766)
Q Consensus 308 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~ 384 (766)
.. .+.+..+ ...+++...|+.+-..|+. |+..|+.+++++|++..+|.++|.++...|+.+.|..+|..+++++|.
T Consensus 104 ~~~~a~r~~~-q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~ 182 (966)
T KOG4626|consen 104 GSLLAIRKNP-QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD 182 (966)
T ss_pred hhhhhhhccc-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc
Confidence 11 1111111 2235555666666666664 777777777777777777777777777777777777777777777775
Q ss_pred HHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccH
Q 004243 385 VDCLEL-RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL 463 (766)
Q Consensus 385 ~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l 463 (766)
..+... +|.++-..|+..+|...|.++++..|.... +|..+|.+....|....| |
T Consensus 183 l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi------awsnLg~~f~~~Gei~~a------------------i 238 (966)
T KOG4626|consen 183 LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI------AWSNLGCVFNAQGEIWLA------------------I 238 (966)
T ss_pred hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee------eehhcchHHhhcchHHHH------------------H
Confidence 554444 677777777777777777777777776553 666667666666665555 4
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccc
Q 004243 464 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (766)
Q Consensus 464 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (766)
..|+++++++|+..++|+++|.+|...+.++.|+..|.+|+...|+++.++.++|.+|+.+|..+-|+..|+++++++|+
T Consensus 239 q~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~ 318 (966)
T KOG4626|consen 239 QHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN 318 (966)
T ss_pred HHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC
Confidence 44567777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHH
Q 004243 544 FEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQ 621 (766)
Q Consensus 544 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 621 (766)
+ ++++.++|.++...|+..+|..+|.+++.+ +++++.+
T Consensus 319 F----------------------------------------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 319 F----------------------------------------PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred c----------------------------------------hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 6 678899999999999999999999999999 6889999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 622 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 622 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
+||.+|..+|.+++|...|.++++..|....+..+++ ..|++++|+.+|+.++.+.|..+.++.++|+.|..+|+.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999999999999999999999998 679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 004243 698 VEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 759 (766)
Q Consensus 698 ~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 759 (766)
..|+.+|.+|+.++|.....+ ++|.+|...|+..+|+..|+.+|+++|+.++++..+....+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 999999999999999996555 99999999999999999999999999999999887765443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-42 Score=343.30 Aligned_cols=385 Identities=20% Similarity=0.189 Sum_probs=353.9
Q ss_pred hhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHH
Q 004243 251 ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL 330 (766)
Q Consensus 251 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (766)
..++-+++|.++|+++-.+|++++|+..|+.+++++|.+..+ |+.++.++
T Consensus 111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida------------------------------~inla~al 160 (966)
T KOG4626|consen 111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDA------------------------------YINLAAAL 160 (966)
T ss_pred ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHH------------------------------HhhHHHHH
Confidence 456778999999999999999999999999999999987755 44455555
Q ss_pred hccCc--HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH-HHHHHHHHHHHhhhhHHHHHHH
Q 004243 331 YNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFIAADDYESALRD 407 (766)
Q Consensus 331 ~~~~~--~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~~g~~~~A~~~ 407 (766)
...++ .|..+|..+++++|+..-+....|..+..+|+.++|..+|.++++.+|.. ..|..+|.++..+|+...|+..
T Consensus 161 ~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHH
Confidence 55555 49999999999999999999999999999999999999999999999954 4466699999999999999999
Q ss_pred HHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHH
Q 004243 408 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 487 (766)
Q Consensus 408 ~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~ 487 (766)
|+++++++|+.. +++..+|.++...+.+++| +.+|.+++...|+++.++-++|.+|
T Consensus 241 y~eAvkldP~f~------dAYiNLGnV~ke~~~~d~A------------------vs~Y~rAl~lrpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 241 YEEAVKLDPNFL------DAYINLGNVYKEARIFDRA------------------VSCYLRALNLRPNHAVAHGNLACIY 296 (966)
T ss_pred HHHhhcCCCcch------HHHhhHHHHHHHHhcchHH------------------HHHHHHHHhcCCcchhhccceEEEE
Confidence 999999999999 5999999999999999998 6788999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHH
Q 004243 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 567 (766)
Q Consensus 488 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~ 567 (766)
..+|..+-|+..|+++++..|+.++++.++|.++...|+..+|..+|.+++.+.|++
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h----------------------- 353 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH----------------------- 353 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-----------------------
Confidence 999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004243 568 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLE 645 (766)
Q Consensus 568 ~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 645 (766)
+++.++||.+|.++|.+++|...|+++++.. -..++.+||.+|.++|++++|+..|++++.
T Consensus 354 -----------------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 354 -----------------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred -----------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 7778999999999999999999999999994 457899999999999999999999999999
Q ss_pred hccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HH
Q 004243 646 KAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LR 720 (766)
Q Consensus 646 ~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~l 720 (766)
+.|..++++.++| .+|+...|+.+|.+++.++|..++++.+||.+|...|+..+|+..|+.++++.|+.+..+ ++
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 9999999999999 679999999999999999999999999999999999999999999999999999995544 77
Q ss_pred HHHHHHcCC
Q 004243 721 AAFYESIGD 729 (766)
Q Consensus 721 a~~~~~~g~ 729 (766)
+.++.-..+
T Consensus 497 lh~lq~vcd 505 (966)
T KOG4626|consen 497 LHCLQIVCD 505 (966)
T ss_pred HHHHHHHhc
Confidence 766654433
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.6e-35 Score=349.13 Aligned_cols=487 Identities=13% Similarity=0.091 Sum_probs=353.4
Q ss_pred HHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh--HHHHHHHHhcc---HHHHHHHHhhhccCCCchhHHHHHHHHh
Q 004243 257 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQ---QYSAYKLINSIISEHKPTGWMYQERSLY 331 (766)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~l~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (766)
..+..+|.++...|++++|+..|+++++.+|..... .++..+...++ +...+..+....+ .....+...+..+.
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYL 442 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHH
Confidence 345555666666666666666666665555544332 23333333333 3334444333332 22233333444444
Q ss_pred ccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH-HHHHHHHHHHHhhhhHHHHHHHH
Q 004243 332 NLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFIAADDYESALRDT 408 (766)
Q Consensus 332 ~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~ 408 (766)
..++. |+..+++.+...|+++..+..+|.++...|++++|+..|+++++.+|+. ..+..+|.++...|++++|+..|
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44442 5555555555555555555555555555555555555555555444422 22223455555555555555555
Q ss_pred HHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhc---------------c-cCccccHHHHHHHHHc
Q 004243 409 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWS---------------S-VDDIGSLAVINQMLIN 472 (766)
Q Consensus 409 ~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------~-~~~~~~l~~~~~al~~ 472 (766)
++++...|++. .++..++.++...|++++|..++....... . .+...++..+++++..
T Consensus 523 ~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 523 EKVLTIDPKNL------RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHhCcCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 55555544444 244444444444444444443332210000 0 0111125566888889
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHH
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 551 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~ 551 (766)
.|.++..|..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++.+|++ ..+..++
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 676 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA 676 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccc----cchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-ChHHHHHHHHH
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARV 626 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~la~~ 626 (766)
..+...+ ++++|+..++.... ....+..+|.++...|++++|+..|++++... ....+..++.+
T Consensus 677 ~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 677 QLLLAAK-----------RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA 745 (899)
T ss_pred HHHHHcC-----------CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 9988887 88889888888754 35788899999999999999999999999984 34688899999
Q ss_pred HHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHH
Q 004243 627 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 702 (766)
Q Consensus 627 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 702 (766)
+...|++++|...++++++..|++..++..++ ..|++++|+..|+++++.+|+++.++..+|.++...|+ .+|+.
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 99999999999999999999999999998888 56999999999999999999999999999999999999 88999
Q ss_pred HHHHHHhcCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhh
Q 004243 703 ELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 703 ~~~~al~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 762 (766)
.++++++..|+++. +..+|.++...|++++|+..|+++++.+|.+++++..+..+.....
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 99999999999955 4489999999999999999999999999999999988887766544
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-34 Score=343.20 Aligned_cols=492 Identities=18% Similarity=0.130 Sum_probs=339.3
Q ss_pred hhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh--HHHHHHHHhcc---HHHHHHHHhhhccCCCchhHHH
Q 004243 251 ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQ---QYSAYKLINSIISEHKPTGWMY 325 (766)
Q Consensus 251 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~l~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~ 325 (766)
..+..+..++.+|..+...|++++|+..|+++++.+|....+ .++..+...++ +...++++.+..| .....|..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 198 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLL 198 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHH
Confidence 345567788999999999999999999999999998876554 66677777776 5555555555544 55688999
Q ss_pred HHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhHH
Q 004243 326 QERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYE 402 (766)
Q Consensus 326 ~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~ 402 (766)
+|..+...|+. |+..|+++++.+|+++.++..++.++...|++++|...++++++..|+ +...+..|.+++..|+++
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHH
Confidence 99999998886 999999999999999999999999999999999999999999998884 444555899999999999
Q ss_pred HHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcc----------------cCccccHHHH
Q 004243 403 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS----------------VDDIGSLAVI 466 (766)
Q Consensus 403 ~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------~~~~~~l~~~ 466 (766)
+|+..|+++++.+|++.. ++..+|.++...|+++.|...+........ .+...++..+
T Consensus 279 ~A~~~~~~~l~~~~~~~~------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (899)
T TIGR02917 279 DARETLQDALKSAPEYLP------ALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352 (899)
T ss_pred HHHHHHHHHHHhCCCchh------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999998773 667788888888888888755533211110 1111225566
Q ss_pred HHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-H
Q 004243 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-E 545 (766)
Q Consensus 467 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~ 545 (766)
.+++...|.++..+..+|.++...|++++|+..|+++++.+|+++..+..+|.++...|++++|++.++++++.+|+. .
T Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 432 (899)
T TIGR02917 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchh
Confidence 677777777777888888888888888888888888888888877788888888888888888888888887777766 5
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc----cchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHH
Q 004243 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRA 619 (766)
Q Consensus 546 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 619 (766)
....++..+...+ ++++|+..+++... .+..+..+|.++...|++++|+..|+++++.+ ++.+
T Consensus 433 ~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 433 ADLLLILSYLRSG-----------QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred hHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 5555555544443 44444444444332 12445555555555555555555555555442 2334
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhccCCH----------------------------------HHHHHHh----hhc
Q 004243 620 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSA----------------------------------SAFEKRS----EYS 661 (766)
Q Consensus 620 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------------------------~~~~~~~----~~~ 661 (766)
+..+|.++...|++++|...+++++...|++. ..+..++ ..|
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCC
Confidence 44455555555555555555555544444444 4443333 235
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 662 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 662 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~a 740 (766)
++++|+..+++++...|.++.+|..+|.++...|++++|+..|+++++.+|+++ .+..+|.++...|++++|+..|+++
T Consensus 582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666666666666666666666666666666666666666666666666553 3335666666666666666666666
Q ss_pred HccCCCChhHHHHHHHHHHh
Q 004243 741 LCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 741 l~~~p~~~~~~~~l~~~~~~ 760 (766)
++.+|++.+++..+..+...
T Consensus 662 ~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 662 LELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HhcCCCCHHHHHHHHHHHHH
Confidence 66666666666555555443
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.1e-33 Score=334.22 Aligned_cols=489 Identities=12% Similarity=0.009 Sum_probs=334.3
Q ss_pred cchhhHHHHHHHHhhcchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh------------------HH
Q 004243 233 RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA------------------GL 294 (766)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------~l 294 (766)
.+.+.+...|+++....++++ .++..++.+++..|++++|...++++++++|.+... ..
T Consensus 42 ~~~d~a~~~l~kl~~~~p~~p---~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 42 HREDLVRQSLYRLELIDPNNP---DVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred CChHHHHHHHHHHHccCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHH
Confidence 345667788888888877765 467788999999999999999999999999887543 12
Q ss_pred HHHHHHhcc---HHHHHHHHhhhccCCCchhHHHHHHHHhccCc--HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Q 004243 295 ARAKYKVGQ---QYSAYKLINSIISEHKPTGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 369 (766)
Q Consensus 295 ~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~ 369 (766)
++.+...++ |...|+++....|+....+..+........++ +|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 334554454 66666666655443332233233333322344 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCH----------------------------------HH---------------------HHHHHHH
Q 004243 370 AAISEIDRIIVFKLSV----------------------------------DC---------------------LELRAWL 394 (766)
Q Consensus 370 ~A~~~~~~al~~~~~~----------------------------------~~---------------------~~~~a~~ 394 (766)
+|+..+++++...+.. .. ...+|..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 9999999886543210 00 0123777
Q ss_pred HHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCC
Q 004243 395 FIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP 474 (766)
Q Consensus 395 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p 474 (766)
+...|++++|+..|+++++.+|+++ .++..+|.++...+++++|. ..++++++.+|
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~------~a~~~Lg~~~~~~g~~~eA~------------------~~l~~Al~~~p 334 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDS------EALGALGQAYSQQGDRARAV------------------AQFEKALALDP 334 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHH------------------HHHHHHHHhCC
Confidence 8889999999999999999999998 48899999999999999995 45588999888
Q ss_pred CChh--------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 004243 475 GKSF--------------LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (766)
Q Consensus 475 ~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (766)
++.. ....+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|++++++
T Consensus 335 ~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 335 HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7653 12355888999999999999999999999999999999999999999999999999999999
Q ss_pred ccch-HHHHHHHHHHHhcCCCC-------------------------------CChHHHHHHHHHHHhchhhccc--c--
Q 004243 541 ERTF-EAFFLKAYILADTNLDP-------------------------------ESSTYVIQLLEEALRCPSDGLR--K-- 584 (766)
Q Consensus 541 ~p~~-~~~~~~~~~l~~~~~~~-------------------------------~~~~~~~~~~~~A~~~~~~~l~--~-- 584 (766)
+|++ .++..++..+....... +......+++++|++.++++++ |
T Consensus 415 ~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~ 494 (1157)
T PRK11447 415 DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494 (1157)
T ss_pred CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999 78877777664321000 0000112344445555544433 2
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHH-------------------
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKL------------------- 643 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------- 643 (766)
+.+++.+|.+|...|++++|+..|+++++. +++..++.++..+...+++++|+..++++
T Consensus 495 ~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 234445555555555555555555555444 23344444444444455555554443321
Q ss_pred ---------------------HHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHH
Q 004243 644 ---------------------LEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV 698 (766)
Q Consensus 644 ---------------------l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 698 (766)
++..|+++..+..++ ..|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 112233333344444 3466666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCh
Q 004243 699 EAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 748 (766)
Q Consensus 699 ~A~~~~~~al~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 748 (766)
+|++.++++++..|++.. ...+|.++...|++++|++.|++++...|+++
T Consensus 655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 655 AARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 666666666666666533 33556666666666666666666666655443
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.8e-32 Score=324.64 Aligned_cols=470 Identities=15% Similarity=0.058 Sum_probs=375.0
Q ss_pred cchhhHHHHHHHHhhcchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHH--HHHH---hccHHHH
Q 004243 233 RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLAR--AKYK---VGQQYSA 307 (766)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~--~~~~---~~~a~~~ 307 (766)
...+.++..++++.+..+.. ..++..+|.+++..|++++|+..|++++...+....+.... .... ...+...
T Consensus 161 g~~~~A~~~L~~ll~~~P~~---~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 161 AQRPEAINQLQRLNADYPGN---TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred ccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 34556777787777765554 45778899999999999999999999987544322111100 0000 0112222
Q ss_pred HHHHhhhccCC------------------Cc-hhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Q 004243 308 YKLINSIISEH------------------KP-TGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEG 366 (766)
Q Consensus 308 ~~~~~~~~~~~------------------~~-~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g 366 (766)
+.......+.. ++ ......|..++..++. |+..|+++++.+|+++.++..+|.++..+|
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g 317 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQG 317 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 22222222211 11 1122457778888875 999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCCHHH------------H---HHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHH
Q 004243 367 QIRAAISEIDRIIVFKLSVDC------------L---ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 431 (766)
Q Consensus 367 ~~~~A~~~~~~al~~~~~~~~------------~---~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 431 (766)
++++|+..|+++++.+|+... + ..+|.++...|++++|+..|+++++.+|++.. ++..+
T Consensus 318 ~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~------a~~~L 391 (1157)
T PRK11447 318 DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSY------AVLGL 391 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHH
Confidence 999999999999999884321 1 12588889999999999999999999999884 88889
Q ss_pred hHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHH-------------------------------
Q 004243 432 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR------------------------------- 480 (766)
Q Consensus 432 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~------------------------------- 480 (766)
|.++...|++++|...+ +++++.+|++..++
T Consensus 392 g~~~~~~g~~~eA~~~y------------------~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 392 GDVAMARKDYAAAERYY------------------QQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHHHHCCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999996444 55555555544443
Q ss_pred -----------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHH
Q 004243 481 -----------FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF 548 (766)
Q Consensus 481 -----------~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 548 (766)
..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++ ..++
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~ 533 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVY 533 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3455666678999999999999999999999999999999999999999999999999999999 8888
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc--------------chhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 549 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK--------------GQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 549 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
..+..+...+ +.++|+..+++.... ......++..+...|++++|+..++. .-
T Consensus 534 a~al~l~~~~-----------~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--~p 600 (1157)
T PRK11447 534 AYGLYLSGSD-----------RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--QP 600 (1157)
T ss_pred HHHHHHHhCC-----------CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--CC
Confidence 7777766665 778888877765431 12345678899999999999999882 23
Q ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 004243 615 KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAV 690 (766)
Q Consensus 615 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 690 (766)
.++..+..+|.++...|++++|+..|+++++..|++..++..++ ..|++++|+..++++++..|+++.++..+|.+
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 56678899999999999999999999999999999999999888 56999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 691 LMDDQKEVEAVEELSKAIAFKPDLQ-------MLHLRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 691 ~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
+...|++++|++.|++++...|+.+ .+..+|.++...|++++|+..|++++.
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999866542 233679999999999999999999985
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=6.5e-32 Score=302.24 Aligned_cols=414 Identities=14% Similarity=0.092 Sum_probs=289.5
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccC
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (766)
.+..+..+|+.++..|+|++|+..|++++...|... .|..++.++...+
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~-------------------------------~~~n~a~~~~~l~ 174 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-------------------------------YYSNRAACHNALG 174 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH-------------------------------HHHHHHHHHHHhC
Confidence 466788999999999999999999999999887521 1334555666666
Q ss_pred cH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHHHHHHHHHH
Q 004243 335 RE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESALRDTLAL 411 (766)
Q Consensus 335 ~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~a 411 (766)
++ |+..++++++++|++..+++.+|.++..+|++++|+..|..+...++....... ..... -...+......+
T Consensus 175 ~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~a~~~~~~~ 250 (615)
T TIGR00990 175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERL----LKKFAESKAKEI 250 (615)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH----HHHHHHHHHHHH
Confidence 65 999999999999999999999999999999999999999988776653222211 11111 113444556666
Q ss_pred HhccCCcccccccchhhhHHhHHHHHHhhhchHh---------------hHHHhhhhh---cc-cCccccHHHHHHHHHc
Q 004243 412 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPAD---------------CWIKLYDRW---SS-VDDIGSLAVINQMLIN 472 (766)
Q Consensus 412 l~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~---------------~~~~~~~~~---~~-~~~~~~l~~~~~al~~ 472 (766)
++..|.+.. ....++....... ...+. .++.++... .. .....++..|++++..
T Consensus 251 l~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 251 LETKPENLP------SVTFVGNYLQSFR-PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL 323 (615)
T ss_pred HhcCCCCCC------CHHHHHHHHHHcc-CCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 666776653 2233333221110 00000 000000000 00 0000113344445443
Q ss_pred ---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHH
Q 004243 473 ---DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFL 549 (766)
Q Consensus 473 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 549 (766)
.|....++..+|.++..+|++++|+..++++++.+|..+..+..+|.++...|++++|+..|+++++.+|++
T Consensus 324 ~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----- 398 (615)
T TIGR00990 324 GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED----- 398 (615)
T ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----
Confidence 244445555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHH
Q 004243 550 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVY 627 (766)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~ 627 (766)
+.+++.+|.++...|++++|+..|+++++++ ...++..+|.++
T Consensus 399 -----------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 399 -----------------------------------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred -----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 5778899999999999999999999999985 456889999999
Q ss_pred HHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhH------HHHHHHH-HhCCC
Q 004243 628 YLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPY------RYRAAVL-MDDQK 696 (766)
Q Consensus 628 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~------~~la~~~-~~~g~ 696 (766)
..+|++++|+..|++++...|+++.++..+| ..|++++|+..|++++.++|.....+ ...+..+ ...|+
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999988888 56999999999999999998753332 2333333 34699
Q ss_pred HHHHHHHHHHHHhcCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhH
Q 004243 697 EVEAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMET 750 (766)
Q Consensus 697 ~~~A~~~~~~al~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 750 (766)
+++|+..+++++.++|++.. +..+|.++...|++++|+..|++++++.+...+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999998854 5588999999999999999999999998875553
No 8
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-30 Score=269.49 Aligned_cols=484 Identities=14% Similarity=0.065 Sum_probs=361.0
Q ss_pred HhhhHHhhcccHHHHHHHHHHHHhcCccccHh--HHHHHHHHhcc------HHHHHHHHhhhccCCCchhHHHHHHHHhc
Q 004243 261 QLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQ------QYSAYKLINSIISEHKPTGWMYQERSLYN 332 (766)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~l~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (766)
.+|..+.+.|+.+.|+..|+++++++|....+ +|+.+.....+ +...+.++....+ .+|.+...+++-++.
T Consensus 204 gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyf 282 (1018)
T KOG2002|consen 204 GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYF 282 (1018)
T ss_pred hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhh
Confidence 34555566666666666666666666644433 33333222222 2222222222222 557777777777777
Q ss_pred cCcH--HHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH-HH-HHHHHHHHHhhhhHHHHH
Q 004243 333 LGRE--KIVDLNYASELD---PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DC-LELRAWLFIAADDYESAL 405 (766)
Q Consensus 333 ~~~~--A~~~~~~al~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~-~~~~a~~~~~~g~~~~A~ 405 (766)
.+++ +......++... +--+..+|.+|.+|..+|+|++|..+|.++++.+++. .. ++-+|+.|+..|+++.|.
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHH
Confidence 7775 666666665544 2334568889999999999999999999999888865 22 233999999999999999
Q ss_pred HHHHHHHhccCCcccccccchhhhHHhHHHHHHh----hhchHh---------------hHHHhhhhhcccCccccHHHH
Q 004243 406 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR----SWSPAD---------------CWIKLYDRWSSVDDIGSLAVI 466 (766)
Q Consensus 406 ~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~----~~~~A~---------------~~~~~~~~~~~~~~~~~l~~~ 466 (766)
..|+++++..|++. ++...+|.+|...+ ..++|. .|+.+...|...+...++..|
T Consensus 363 ~~fEkv~k~~p~~~------etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~ 436 (1018)
T KOG2002|consen 363 FCFEKVLKQLPNNY------ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAY 436 (1018)
T ss_pred HHHHHHHHhCcchH------HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHH
Confidence 99999999999998 47788888886663 222222 233333333334444446777
Q ss_pred HHHHHc-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCc-----hhhHHHHHHHHHHCCCHHHHH
Q 004243 467 NQMLIN-----DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-----SSSE-----HERLVYEGWILYDTGHREEAL 531 (766)
Q Consensus 467 ~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~-----~~~~~~lg~~~~~~g~~~~A~ 531 (766)
..++.. .+--++.+.++|..++..|++++|...|..|+.. +++. ....+++|.++-..++++.|.
T Consensus 437 ~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 437 GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 777643 3445678888999999999999999999988765 2222 235788999999999999999
Q ss_pred HHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc----cchhHHhhHHHHHHhCCHHHHHH
Q 004243 532 SRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAEN 606 (766)
Q Consensus 532 ~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~~~~~~lg~~~~~~g~~~~A~~ 606 (766)
+.|..+++..|++ +++..++......+ ...+|...+..++. .+.++..+|..++...++..|..
T Consensus 517 e~Yk~Ilkehp~YId~ylRl~~ma~~k~-----------~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 517 EMYKSILKEHPGYIDAYLRLGCMARDKN-----------NLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHHHHHHHHCchhHHHHHHhhHHHHhcc-----------CcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 9999999999999 88888874444444 66777777777765 36899999999999999999999
Q ss_pred HHHHHHcc----CChHHHHHHHHHHHH------------hccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHH
Q 004243 607 CYINALDI----KHTRAHQGLARVYYL------------KNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMA 666 (766)
Q Consensus 607 ~~~~al~~----~~~~~~~~la~~~~~------------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A 666 (766)
-|+..++. .++.+...||+++.. .+.+++|++.|.+++..+|.|..+-+..| ..|++.+|
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A 665 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEA 665 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHH
Confidence 88877766 356778888987764 35578899999999999999988776666 67999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 667 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK-P--DLQMLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 667 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
+..|.++.+.-.+++.+|.++|.+|..+|+|..|++.|+.++... + +...+..+|.++...|.+.+|.+...+|+.+
T Consensus 666 ~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 666 RDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999998877889999999999999999999999999998873 3 3367779999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhhh
Q 004243 744 DPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 744 ~p~~~~~~~~l~~~~~~~~ 762 (766)
.|.++.+...++-+..++.
T Consensus 746 ~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 746 APSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred CCccchHHhHHHHHHHHHH
Confidence 9999998887777665543
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5e-30 Score=287.07 Aligned_cols=394 Identities=19% Similarity=0.136 Sum_probs=307.4
Q ss_pred hHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH-HHHHHHHHHHhh
Q 004243 322 GWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELRAWLFIAA 398 (766)
Q Consensus 322 ~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~~ 398 (766)
.+...|+.++..+++ |+..|+++++..|+ +..|.++|.+|..+|++++|+..++++++++|+.. .++.+|.+|..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 455678889999996 99999999999996 78899999999999999999999999999999544 566699999999
Q ss_pred hhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhh-----------hhcccCccccHHHHH
Q 004243 399 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYD-----------RWSSVDDIGSLAVIN 467 (766)
Q Consensus 399 g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~ 467 (766)
|++++|+..|..+...++.+... ....+...... .....+...+.... .............+.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-----SAQAVERLLKK-FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 99999999999888776554420 00111111100 00111111110000 000000000011122
Q ss_pred HHHHcCCCChhHHHHHHHHHH---hcCCHHHHHHHHHHHHhc---CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc
Q 004243 468 QMLINDPGKSFLRFRQSLLLL---RLNCQKAAMRCLRLARNH---SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (766)
Q Consensus 468 ~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (766)
...+.+|.....+..++..+. ..++|++|++.|+++++. .|....++..+|.++...|++++|+..|+++++++
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 333444555555555554433 347899999999999976 46778889999999999999999999999999998
Q ss_pred cchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHH
Q 004243 542 RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRA 619 (766)
Q Consensus 542 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~ 619 (766)
|++ ...|..+|.++...|++++|+..|+++++. +++.+
T Consensus 362 P~~----------------------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 401 (615)
T TIGR00990 362 PRV----------------------------------------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401 (615)
T ss_pred CCc----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 886 566888999999999999999999999998 46789
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 004243 620 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 695 (766)
Q Consensus 620 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 695 (766)
++.+|.++...|++++|+..|+++++.+|++..++..+| ..|++++|+..|++++...|+++.++..+|.++...|
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999888 5699999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCh-HH------HHHHH-HHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhh
Q 004243 696 KEVEAVEELSKAIAFKPDL-QM------LHLRA-AFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 696 ~~~~A~~~~~~al~~~p~~-~~------~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 762 (766)
++++|++.|+++++++|+. .. +...+ .++...|++++|+..++++++++|++..++..++++.....
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQG 556 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc
Confidence 9999999999999998875 21 12223 33444799999999999999999999988888887766544
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=7.9e-29 Score=280.81 Aligned_cols=500 Identities=12% Similarity=-0.049 Sum_probs=343.0
Q ss_pred cchhhHHHHHHHHhhcchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHH-HHHHHHhccHHHHHHHH
Q 004243 233 RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGL-ARAKYKVGQQYSAYKLI 311 (766)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l-~~~~~~~~~a~~~~~~~ 311 (766)
.+.+.+...+.++++..|++ ..+++.++..|+..|++++|+..++++++.+|.+....+ .-...+..++...|+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n---~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l 134 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN---IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEEL 134 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHH
Confidence 44556677777777776665 456788888888888888888888888888887765522 12224555577888888
Q ss_pred hhhccCCCchhHHHHHHH------H-hccCcHHHHHHH-HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004243 312 NSIISEHKPTGWMYQERS------L-YNLGREKIVDLN-YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 383 (766)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~------~-~~~~~~A~~~~~-~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 383 (766)
....| .+......++.. + +...+.|.+.++ +.+..+|+.....+.++.+|..+|+|++|+..+.++++..|
T Consensus 135 ~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 135 LAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred HHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 77777 555555555555 1 323333333333 33333334445666668888888888888888888888777
Q ss_pred CHHHHHH-HHHHHHh-hhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcc-----
Q 004243 384 SVDCLEL-RAWLFIA-ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS----- 456 (766)
Q Consensus 384 ~~~~~~~-~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----- 456 (766)
....... ++.+|.. +++ ++|...++..++ +++ .+...++..+...|+.++|..+++.+.....
T Consensus 214 l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~------~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 214 LSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDP------QSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCH------HHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 4444333 6666666 355 555555443222 222 2444455555555555555544432110000
Q ss_pred ------------------------------------------------------------------------cCccccHH
Q 004243 457 ------------------------------------------------------------------------VDDIGSLA 464 (766)
Q Consensus 457 ------------------------------------------------------------------------~~~~~~l~ 464 (766)
....++..
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 00000011
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh---------------------------------------
Q 004243 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN--------------------------------------- 505 (766)
Q Consensus 465 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--------------------------------------- 505 (766)
......+..|.+.......+......|++++|...++.+..
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 11222223355555555555555566666666555554433
Q ss_pred --------------------------cCCC--chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Q 004243 506 --------------------------HSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 557 (766)
Q Consensus 506 --------------------------~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 557 (766)
..|. ++.+++.+|.++.. |++++|+..+.+++...|+......++..+...
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV 522 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 2344 56666777777766 677777777777777777663344445555555
Q ss_pred CCCCCChHHHHHHHHHHHhchhhccc-c--chhHHhhHHHHHHhCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHhcc
Q 004243 558 NLDPESSTYVIQLLEEALRCPSDGLR-K--GQALNNLGSIYVECGKLDQAENCYINALDIKH--TRAHQGLARVYYLKNE 632 (766)
Q Consensus 558 ~~~~~~~~~~~~~~~~A~~~~~~~l~-~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~la~~~~~~g~ 632 (766)
+ ++++|+..++++.. + ...+..+|.++...|++++|+.+|+++++.++ ...+..++......|+
T Consensus 523 G-----------r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 523 E-----------DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred C-----------CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC
Confidence 5 89999999988755 2 35678899999999999999999999998853 3344455555566799
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004243 633 LKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 633 ~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 708 (766)
+++|+..++++++.+|+ ..++..+| ..|++++|+..|++++.++|+++.++.++|.++...|++++|+..|++++
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999996 88888888 67999999999999999999999999999999999999999999999999
Q ss_pred hcCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 004243 709 AFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 759 (766)
Q Consensus 709 ~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 759 (766)
+.+|+++ .++++|.++...|++++|+..|+++++++|++..+....+.+..
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 9999995 55599999999999999999999999999999887766555443
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-29 Score=262.73 Aligned_cols=475 Identities=16% Similarity=0.089 Sum_probs=327.9
Q ss_pred hHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh---HHHHHHHHhc---cHHHHHHHHhhhccCCCchhHHH
Q 004243 252 RWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA---GLARAKYKVG---QQYSAYKLINSIISEHKPTGWMY 325 (766)
Q Consensus 252 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~l~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ 325 (766)
+|.+..++...+.+.+..|+|-.|+.+|++++.++|..... +++.+..+.+ .|..++.++.++.| ....+...
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~ 238 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVA 238 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHH
Confidence 34445566666677777777777777777777775543222 4444444433 36777777777766 44455555
Q ss_pred HHHHHhccCc-----HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHH
Q 004243 326 QERSLYNLGR-----EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFI 396 (766)
Q Consensus 326 ~~~~~~~~~~-----~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~ 396 (766)
+|...+...+ .++..+.++...+|.||.++..++.-++..|+|..+......++.... ....+|.+|.+|.
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 5544443333 177777777777777777777777777777777777777777765542 2334666777777
Q ss_pred hhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCC
Q 004243 397 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 476 (766)
Q Consensus 397 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~ 476 (766)
.+|+|++|..+|.++++.+|++.. -.+..+|.++...|.++.+ +.+|+++++..|++
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~-----l~~~GlgQm~i~~~dle~s------------------~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFV-----LPLVGLGQMYIKRGDLEES------------------KFCFEKVLKQLPNN 375 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCcc-----ccccchhHHHHHhchHHHH------------------HHHHHHHHHhCcch
Confidence 777777777777777777777731 3667777777777776666 34557777777777
Q ss_pred hhHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc-----c-chHH
Q 004243 477 SFLRFRQSLLLLRLN----CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE-----R-TFEA 546 (766)
Q Consensus 477 ~~~~~~la~~~~~~g----~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~ 546 (766)
.+....+|.+|...+ ..++|.....++++..|.+.++|..++.++....-+.. +..|.+|+.+- + .-+.
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHH
Confidence 777777777777664 45667777777777777777777777777766554444 77777776431 1 1155
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc-------cch-------hHHhhHHHHHHhCCHHHHHHHHHHHH
Q 004243 547 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR-------KGQ-------ALNNLGSIYVECGKLDQAENCYINAL 612 (766)
Q Consensus 547 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-------~~~-------~~~~lg~~~~~~g~~~~A~~~~~~al 612 (766)
.+++|......| .+++|...+.+++. +.. ..+++|.++-..++++.|.+.|...+
T Consensus 455 LNNvaslhf~~g-----------~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 455 LNNVASLHFRLG-----------NIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHhHHHHHHHhc-----------ChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 555665555554 45555555544432 112 46777777777777777777777777
Q ss_pred ccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhh-------------------------------
Q 004243 613 DIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE------------------------------- 659 (766)
Q Consensus 613 ~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~------------------------------- 659 (766)
+.. ..+++..+|......++..+|...++.++..+..++.++...|.
T Consensus 524 kehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 524 KEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred HHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 763 34567777755566677777777777777777777777776661
Q ss_pred --hc-------------------CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHH
Q 004243 660 --YS-------------------DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QML 717 (766)
Q Consensus 660 --~~-------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~ 717 (766)
+| .+++|++.|.++++.+|.|..+-..+|.++...|++.+|...|.++.+--.+. ++|
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~ 683 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVW 683 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCcee
Confidence 01 12789999999999999999999999999999999999999999998775544 778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC--CCChhHHHHHHHHHHhhh
Q 004243 718 HLRAAFYESIGDLTSAIRDSQAALCLD--PNHMETLDLYNRARDQAS 762 (766)
Q Consensus 718 ~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~ 762 (766)
.++|.||..+|+|-.|++.|+.+++.. .+++++...|+++.-...
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999999875 356788888888865543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.6e-26 Score=262.15 Aligned_cols=495 Identities=11% Similarity=-0.013 Sum_probs=352.2
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh--HHHHHHHHhcc---HHHHHHHHhhhccCCCchhHHHHHHHH
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQ---QYSAYKLINSIISEHKPTGWMYQERSL 330 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~l~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (766)
...+|..|..+...|++++|+..|+++++++|.+..+ .+++.+...|+ +....+++.+..| ...++......
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP---~n~~~~~~La~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP---GDARLERSLAA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc---ccHHHHHHHHH
Confidence 3456778888888899999999999999999998655 67788888887 4455555555544 33444443344
Q ss_pred hccCcHHHHHHHHHHhcCCCCchHHHHHHHH--------HHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhH
Q 004243 331 YNLGREKIVDLNYASELDPTLSFPYKYRAVA--------KMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDY 401 (766)
Q Consensus 331 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~--------~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~ 401 (766)
+.....|+..|+++++.+|++..+++.++.. |.+.++..+|+. .+.+..+|.+..+.+ ++.+|..+|++
T Consensus 121 i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 121 IPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred hccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 4555569999999999999999999999998 777777777776 555555555665666 69999999999
Q ss_pred HHHHHHHHHHHhccCCcccccccchhhhHHhHHHHH-HhhhchHhhHHHh------------hhhhcccCcccc----HH
Q 004243 402 ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH-VRSWSPADCWIKL------------YDRWSSVDDIGS----LA 464 (766)
Q Consensus 402 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~-~~~~~~A~~~~~~------------~~~~~~~~~~~~----l~ 464 (766)
++|+..++++++..|.+.. ....++.++.. +++ +.+..+..- .+.....++... +.
T Consensus 199 ~~Ai~lL~~L~k~~pl~~~------~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 199 SQADTLYNEARQQNTLSAA------ERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999874 55666666665 344 444322110 000000111000 11
Q ss_pred HHHHHHHcCCCChhHHH-----------------------------HHHHHHHhc-------------------------
Q 004243 465 VINQMLINDPGKSFLRF-----------------------------RQSLLLLRL------------------------- 490 (766)
Q Consensus 465 ~~~~al~~~p~~~~~~~-----------------------------~la~~~~~~------------------------- 490 (766)
.+......+|.+...++ .....+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAV 351 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhh
Confidence 11111111122111111 112223333
Q ss_pred ----CCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch---H-HHHHHHHHHHhcCC---
Q 004243 491 ----NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---E-AFFLKAYILADTNL--- 559 (766)
Q Consensus 491 ----g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~-~~~~~~~~l~~~~~--- 559 (766)
+.+.+|...+....+..|.+...+...+....+.|++++|...++++....++- . ....++..+.....
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 444455555555555568888899999999999999999999999999863322 1 22244444443321
Q ss_pred ---------------------------------------CCC--ChH--HH------HHHHHHHHhchhhccc--cc-hh
Q 004243 560 ---------------------------------------DPE--SST--YV------IQLLEEALRCPSDGLR--KG-QA 587 (766)
Q Consensus 560 ---------------------------------------~~~--~~~--~~------~~~~~~A~~~~~~~l~--~~-~~ 587 (766)
.|. ... .. .++.++|+..+.+++. |. ..
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~ 511 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQ 511 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHH
Confidence 011 000 00 1234456666666544 22 22
Q ss_pred HHhhHHHHHHhCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh-hh---cC
Q 004243 588 LNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-EY---SD 662 (766)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~-~~---~~ 662 (766)
...+|.++...|++++|+..|++++.. .....+..+|.++...|++++|...++++++..|+....+..++ .. |+
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC
Confidence 334455667899999999999998776 33457888999999999999999999999999999887776655 44 99
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 004243 663 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 663 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al 741 (766)
+++|+..++++++.+|+ +.++.++|.++.+.|++++|+..|++++.++|++..++ ++|.++...|++++|+..|++++
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999996 99999999999999999999999999999999996554 89999999999999999999999
Q ss_pred ccCCCChhHHHHHHHHHHhhhh
Q 004243 742 CLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 742 ~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
+++|++++++..++.+...+.+
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999998888766543
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.8e-27 Score=228.61 Aligned_cols=421 Identities=13% Similarity=0.098 Sum_probs=305.7
Q ss_pred HHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhc
Q 004243 253 WQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 332 (766)
Q Consensus 253 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (766)
...+.++-..|+-+++.|+|++||++|.+|+++.|+-..- |.++..++..++.+
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF-----YsNraAcY~~lgd~--------------------- 165 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF-----YSNRAACYESLGDW--------------------- 165 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh-----hhhHHHHHHHHhhH---------------------
Confidence 3567788899999999999999999999999998875433 44444444433322
Q ss_pred cCcHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHhhhhHHHH------
Q 004243 333 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESA------ 404 (766)
Q Consensus 333 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~~A------ 404 (766)
+..++...++++++|+...+++.|+.++..+|++.+|+....-.--+.. +...--..-+++-++|. ..+
T Consensus 166 --~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~ 242 (606)
T KOG0547|consen 166 --EKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKE 242 (606)
T ss_pred --HHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcc
Confidence 2366788999999999999999999999999999999988765432221 11111111112211111 111
Q ss_pred -----------HHHHHHHHhccCCcccccccchhhhHHhHHHHHH-----hhhchHhhHHHhhhhhcccCccccHHHHHH
Q 004243 405 -----------LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV-----RSWSPADCWIKLYDRWSSVDDIGSLAVINQ 468 (766)
Q Consensus 405 -----------~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 468 (766)
+..|-....-+|........-.+...+...+... ..|..|...+..- ...+..
T Consensus 243 nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~-----------~~~~~~ 311 (606)
T KOG0547|consen 243 NRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEE-----------CLGSES 311 (606)
T ss_pred cCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHH-----------hhhhhh
Confidence 1122222222221111000000111111111111 0122221111000 000000
Q ss_pred HHHcCC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcccc
Q 004243 469 MLINDP------GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 542 (766)
Q Consensus 469 al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 542 (766)
.+..+. .-+.++...|..++-.|++-.|...++.++.++|.+...+..+|.+|.+.++.++-...|.++.+++|
T Consensus 312 ~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp 391 (606)
T KOG0547|consen 312 SLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP 391 (606)
T ss_pred hccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC
Confidence 011110 11567888899999999999999999999999999998899999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC--hHHH
Q 004243 543 TFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH--TRAH 620 (766)
Q Consensus 543 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~ 620 (766)
++ +.+|+..|.+++-++++++|+..|++++.++| ..++
T Consensus 392 ~n----------------------------------------~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 392 EN----------------------------------------PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred CC----------------------------------------CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 98 78899999999999999999999999999964 5678
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCC------CchhHHHHHHH
Q 004243 621 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPL------RTYPYRYRAAV 690 (766)
Q Consensus 621 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~ 690 (766)
..++.+.+++++++++...|+.+....|+.++++...+ ..+++++|++.|.+++.+.|. ++..+...|.+
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 89999999999999999999999999999999988888 568999999999999999998 67777777766
Q ss_pred HHh-CCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHH
Q 004243 691 LMD-DQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDL 753 (766)
Q Consensus 691 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 753 (766)
..+ .+++.+|+..+++|++++|..+..+ .+|.+..++|+.++|+++|+++..+.-...+....
T Consensus 512 ~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a 576 (606)
T KOG0547|consen 512 VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHA 576 (606)
T ss_pred hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 554 4899999999999999999996555 89999999999999999999999887665554433
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=6.2e-27 Score=260.70 Aligned_cols=329 Identities=13% Similarity=0.052 Sum_probs=179.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhH
Q 004243 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 433 (766)
Q Consensus 355 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~ 433 (766)
....+..+...|++++|+..++.++...| .+..++.+|.+....|++++|+..|++++..+|+++ .++..++.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------~a~~~la~ 118 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------EDVLLVAS 118 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHH
Confidence 33344445555555555555555555555 233333455555555555555555555555555555 24455555
Q ss_pred HHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhh
Q 004243 434 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 513 (766)
Q Consensus 434 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 513 (766)
++...|+++.| +..+.++++.+|+++.++..+|.++...|++++|+..+++++...|+++.+
T Consensus 119 ~l~~~g~~~~A------------------i~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a 180 (656)
T PRK15174 119 VLLKSKQYATV------------------ADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM 180 (656)
T ss_pred HHHHcCCHHHH------------------HHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH
Confidence 55555555554 223355555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHH
Q 004243 514 LVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGS 593 (766)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~ 593 (766)
+...+ .+...|++++|+..++++++.+|.. .......++.
T Consensus 181 ~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~---------------------------------------~~~~~~~l~~ 220 (656)
T PRK15174 181 IATCL-SFLNKSRLPEDHDLARALLPFFALE---------------------------------------RQESAGLAVD 220 (656)
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHhcCCCc---------------------------------------chhHHHHHHH
Confidence 44432 2455555555555555555544321 0011223344
Q ss_pred HHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHH----HHHHHHHHHHhccCCHHHHHHHh----hhcCH
Q 004243 594 IYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKA----AYDEMTKLLEKAQYSASAFEKRS----EYSDR 663 (766)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~----A~~~~~~~l~~~p~~~~~~~~~~----~~~~~ 663 (766)
++...|++++|+..|+++++. +++.++..+|.++...|++++ |+..|+++++.+|++..++..+| ..|++
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 555556666666666665555 234455556666666666553 55666666666666665555555 34556
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 664 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 664 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+...++ .+|.++...|++++|+..|+++++
T Consensus 301 ~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 301 EKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666554333 345566666666666666666666
Q ss_pred cCCCC
Q 004243 743 LDPNH 747 (766)
Q Consensus 743 ~~p~~ 747 (766)
.+|++
T Consensus 381 ~~P~~ 385 (656)
T PRK15174 381 ARASH 385 (656)
T ss_pred hChhh
Confidence 66554
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1e-26 Score=258.88 Aligned_cols=327 Identities=12% Similarity=0.025 Sum_probs=282.3
Q ss_pred HHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhh
Q 004243 323 WMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAAD 399 (766)
Q Consensus 323 ~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g 399 (766)
...........|+. |...+..++...|+++.+++.+|.+....|++++|+..++++++.+|+ +..+..+|.++...|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 33344445556664 999999999999999999999999999999999999999999999994 445555999999999
Q ss_pred hHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhH
Q 004243 400 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 479 (766)
Q Consensus 400 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~ 479 (766)
++++|+..|+++++++|++.. ++..++.++...|++++|. ..+.+++...|+.+.+
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~------a~~~la~~l~~~g~~~eA~------------------~~~~~~~~~~P~~~~a 180 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQ------IFALHLRTLVLMDKELQAI------------------SLARTQAQEVPPRGDM 180 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHCCChHHHH------------------HHHHHHHHhCCCCHHH
Confidence 999999999999999999984 7888899999999999884 4457888889998888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTN 558 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~ 558 (766)
+...+ .+...|++++|+..++++++.+|. .......++.++...|++++|+..++++++.+|++
T Consensus 181 ~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~-------------- 245 (656)
T PRK15174 181 IATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG-------------- 245 (656)
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--------------
Confidence 87664 478899999999999999988763 34445566888999999999999999999998887
Q ss_pred CCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHH----HHHHHHHHHccC--ChHHHHHHHHHHHHhcc
Q 004243 559 LDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQ----AENCYINALDIK--HTRAHQGLARVYYLKNE 632 (766)
Q Consensus 559 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~--~~~~~~~la~~~~~~g~ 632 (766)
..++..+|.++...|++++ |+..|+++++.. ++.++..+|.++...|+
T Consensus 246 --------------------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 246 --------------------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred --------------------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 5567788888888999885 899999999884 55789999999999999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004243 633 LKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 633 ~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 708 (766)
+++|+..++++++..|+++.++..++ ..|++++|+..|++++..+|+.+..+..+|.++...|++++|+..|++++
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999888887 56999999999999999999988878888999999999999999999999
Q ss_pred hcCCCh
Q 004243 709 AFKPDL 714 (766)
Q Consensus 709 ~~~p~~ 714 (766)
+.+|+.
T Consensus 380 ~~~P~~ 385 (656)
T PRK15174 380 QARASH 385 (656)
T ss_pred HhChhh
Confidence 999987
No 16
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.96 E-value=3e-26 Score=213.69 Aligned_cols=350 Identities=18% Similarity=0.205 Sum_probs=276.3
Q ss_pred CchhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHH
Q 004243 319 KPTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLF 395 (766)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~ 395 (766)
+..-.+.+|..++..++. |+..|..|++.||++..+++.+|.+|..+|+...|+..+.+++++.|+...... +|.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 345567789999999997 999999999999999999999999999999999999999999999999888887 99999
Q ss_pred HhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCc-cccHHHHHHHHHcCC
Q 004243 396 IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDD-IGSLAVINQMLINDP 474 (766)
Q Consensus 396 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~l~~~~~al~~~p 474 (766)
+++|.+++|...|+.+++.+|++... .++...+..+........... .|...+| ..++......+++.|
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~---~eaqskl~~~~e~~~l~~ql~-------s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLV---LEAQSKLALIQEHWVLVQQLK-------SASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchh---HHHHHHHHhHHHHHHHHHHHH-------HHhcCCchhhHHHHHHHHHhcCc
Confidence 99999999999999999999977631 134445555554444333322 2333333 344888899999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHH
Q 004243 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 553 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~ 553 (766)
.++..+..++.+|...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++ ..+.
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~----- 261 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP----- 261 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH-----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 2111
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccH
Q 004243 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNEL 633 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~ 633 (766)
.|....+..+.+... ......++|
T Consensus 262 ----------------------------------------~YKklkKv~K~les~----------------e~~ie~~~~ 285 (504)
T KOG0624|consen 262 ----------------------------------------FYKKLKKVVKSLESA----------------EQAIEEKHW 285 (504)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHH----------------HHHHhhhhH
Confidence 001111111111111 111334455
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 004243 634 KAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 713 (766)
Q Consensus 634 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 713 (766)
.++++..++.++.+|..+.+ .......+..++...|++.+|+..+.++++++|+
T Consensus 286 t~cle~ge~vlk~ep~~~~i--------------------------r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 286 TECLEAGEKVLKNEPEETMI--------------------------RYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHhcCCcccce--------------------------eeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 55555555555554442221 1233445667888889999999999999999999
Q ss_pred h-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhhhc
Q 004243 714 L-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQQ 765 (766)
Q Consensus 714 ~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 765 (766)
+ .++..++.+|.....|+.|+..|++|++.+|++..+...+.+++++.++..
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 8 666699999999999999999999999999999999999999998877654
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.4e-29 Score=271.44 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=138.5
Q ss_pred ccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHH
Q 004243 47 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 126 (766)
Q Consensus 47 ~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~ 126 (766)
.....+.++||++++ |++|||||+|||++||||++||+++|+|+.. +|.+...++++++|+.+|+|+|||++. ++.+
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~ 91 (480)
T PHA02790 15 ALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSH 91 (480)
T ss_pred HHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-Eecc
Confidence 445678899999977 5699999999999999999999999999954 566521389999999999999999999 9999
Q ss_pred HHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCc--cccccc
Q 004243 127 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYN--PKVMKI 200 (766)
Q Consensus 127 ~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~--~~f~~l 200 (766)
||+++|.+|++||++.+++.|++||.+.|+ ++||++|+.+|+.|+|++|.+.|.+||.+||.++.++ ++|..|
T Consensus 92 nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L 166 (480)
T PHA02790 92 NVVNLLRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYL 166 (480)
T ss_pred cHHHHHHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhC
Confidence 999999999999999999999999999999 9999999999999999999999999999999999986 788765
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=7.3e-26 Score=257.76 Aligned_cols=385 Identities=12% Similarity=-0.003 Sum_probs=315.2
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Q 004243 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 414 (766)
Q Consensus 336 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 414 (766)
.|+..+.++...+|..+.++..+|.++...|++++|+..++++++.+|. +.....+|.++...|++++|+..++++++.
T Consensus 33 ~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~ 112 (765)
T PRK10049 33 EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG 112 (765)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4999999999989999999999999999999999999999999999995 455556999999999999999999999999
Q ss_pred cCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHH
Q 004243 415 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 494 (766)
Q Consensus 415 ~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 494 (766)
+|++. . +..++.++...++++.| +..++++++..|+++.++..++.++...|..+
T Consensus 113 ~P~~~------~-~~~la~~l~~~g~~~~A------------------l~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 113 APDKA------N-LLALAYVYKRAGRHWDE------------------LRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred CCCCH------H-HHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 99998 5 77889999999999888 45569999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchh-----hHHHHHHHHH-----HCCCH---HHHHHHHHHHHccc---cch-HHH----HHHHHH
Q 004243 495 AAMRCLRLARNHSSSEHE-----RLVYEGWILY-----DTGHR---EEALSRAEKSISIE---RTF-EAF----FLKAYI 553 (766)
Q Consensus 495 ~A~~~~~~a~~~~p~~~~-----~~~~lg~~~~-----~~g~~---~~A~~~~~~al~~~---p~~-~~~----~~~~~~ 553 (766)
+|+..++++.. .|+... ....+..+.. ..+++ ++|++.++++++.. |+. ..+ ......
T Consensus 168 ~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 99999998776 554311 1122222222 22345 78999999999664 333 111 111122
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhchhhccc-----cchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC------hHHHHH
Q 004243 554 LADTNLDPESSTYVIQLLEEALRCPSDGLR-----KGQALNNLGSIYVECGKLDQAENCYINALDIKH------TRAHQG 622 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~ 622 (766)
+...+ ++++|+..|++.+. |..+...+|.+|...|++++|+..|+++++.++ ......
T Consensus 247 Ll~~g-----------~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 247 LLARD-----------RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHhh-----------hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 23333 89999999999876 234455579999999999999999999988743 246777
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhccCC---------------HHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchh
Q 004243 623 LARVYYLKNELKAAYDEMTKLLEKAQYS---------------ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYP 683 (766)
Q Consensus 623 la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~ 683 (766)
++.++...|++++|+..++++....|.. ..++..++ ..|+.++|+..+++++...|.++.+
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l 395 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGL 395 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8888999999999999999999887632 22344444 5699999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 684 YRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 684 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
+..+|.++...|++++|++.+++++.++|++.. .+.+|.++...|++++|...++++++..|+++.+...-...
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999954 45889999999999999999999999999999876554433
No 19
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=1e-28 Score=268.24 Aligned_cols=153 Identities=11% Similarity=0.176 Sum_probs=143.8
Q ss_pred ccccccCCCCCCCceEEEEc-CeEEEeehHHHhcCCHHHHHHhcCCCccCC-CCeEEecCCCCCHHHHHHHHHHhhcCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRV 120 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~-~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~-~~~i~~~~~~~~~~~~~~~l~~~yt~~~ 120 (766)
....+++.++.++||+|+|+ |++|||||+|||++|+||++||+++|+|+. +++|+| +++++++|+.+|+|+|||+
T Consensus 14 ~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l--~~v~~~~~~~ll~y~Yt~~- 90 (557)
T PHA02713 14 SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNL--QMFDKDAVKNIVQYLYNRH- 90 (557)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEe--ccCCHHHHHHHHHHhcCCC-
Confidence 44556778899999999997 899999999999999999999999999875 789999 9999999999999999996
Q ss_pred CCCCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccccccc
Q 004243 121 DLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (766)
Q Consensus 121 ~~~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~l 200 (766)
++.+++++||.+|++|+++.|++.|++||.+.|+ ++||+.++.++..+.+..|.+.|.+||.+||.++.++++|.+|
T Consensus 91 --i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L 167 (557)
T PHA02713 91 --ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKT 167 (557)
T ss_pred --CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhC
Confidence 5789999999999999999999999999999999 9999999999999999999999999999999999999999876
Q ss_pred c
Q 004243 201 F 201 (766)
Q Consensus 201 ~ 201 (766)
.
T Consensus 168 ~ 168 (557)
T PHA02713 168 V 168 (557)
T ss_pred C
Confidence 3
No 20
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=1.5e-28 Score=264.98 Aligned_cols=152 Identities=24% Similarity=0.256 Sum_probs=147.8
Q ss_pred ccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCC
Q 004243 45 KFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC 124 (766)
Q Consensus 45 ~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~ 124 (766)
...++..+.++||++.|++++|+|||+|||++||||++||+++++|+.+.+|+| .++++.++..+++|+|||++. ++
T Consensus 27 l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l--~~v~~~~l~~ll~y~Yt~~i~-i~ 103 (571)
T KOG4441|consen 27 LNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINL--EGVDPETLELLLDYAYTGKLE-IS 103 (571)
T ss_pred HHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEE--ecCCHHHHHHHHHHhhcceEE-ec
Confidence 345668899999999999999999999999999999999999999999999999 899999999999999999999 99
Q ss_pred HHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccccccc
Q 004243 125 PGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (766)
Q Consensus 125 ~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~l 200 (766)
.+++++||.+|++||++.+.+.|.+||.++++ ++||+.|..+|+.|+|++|.+.+..||.+||.++.++++|+.|
T Consensus 104 ~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L 178 (571)
T KOG4441|consen 104 EDNVQELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLL 178 (571)
T ss_pred hHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCC
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999999985
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.9e-25 Score=214.22 Aligned_cols=394 Identities=17% Similarity=0.127 Sum_probs=295.4
Q ss_pred HHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhh
Q 004243 323 WMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAAD 399 (766)
Q Consensus 323 ~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g 399 (766)
+-..|+-++..+++ ||++|++||+++|+.+..|.+++.||...|+|++-++.+.++++++|+.....+ ++..+..+|
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 44578888989997 999999999999999999999999999999999999999999999997776555 999999999
Q ss_pred hHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCC----
Q 004243 400 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG---- 475 (766)
Q Consensus 400 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~---- 475 (766)
++++|+......- +..+... ......+..+...++. .++.+.+. -++...+.....+..|-.....+|.
T Consensus 198 ~~~eal~D~tv~c-i~~~F~n----~s~~~~~eR~Lkk~a~-~ka~e~~k-~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 198 KFDEALFDVTVLC-ILEGFQN----ASIEPMAERVLKKQAM-KKAKEKLK-ENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred cHHHHHHhhhHHH-Hhhhccc----chhHHHHHHHHHHHHH-HHHHHhhc-ccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 9999998765432 2111110 0011111222211111 11111110 0000001111114444444333321
Q ss_pred ---C-hhHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC----CCc---------hhhHHHHHHHHHHCCCHHHHHHHHH
Q 004243 476 ---K-SFLRFRQSLLLLRLN---CQKAAMRCLRLARNHS----SSE---------HERLVYEGWILYDTGHREEALSRAE 535 (766)
Q Consensus 476 ---~-~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~----p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (766)
+ .++-..-+.-++..+ .|.+|...+.+..... ..+ +.++...|..++-.|++-.|.+.|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 1 222222222222223 5777777766543321 112 5678888999999999999999999
Q ss_pred HHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC
Q 004243 536 KSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 615 (766)
Q Consensus 536 ~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (766)
++|.++|.+ ...|..+|.+|....+.++-...|.+|..++
T Consensus 351 ~~I~l~~~~----------------------------------------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld 390 (606)
T KOG0547|consen 351 AAIKLDPAF----------------------------------------NSLYIKRAAAYADENQSEKMWKDFNKAEDLD 390 (606)
T ss_pred HHHhcCccc----------------------------------------chHHHHHHHHHhhhhccHHHHHHHHHHHhcC
Confidence 999999886 4447888999999999999999999999994
Q ss_pred --ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 004243 616 --HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAA 689 (766)
Q Consensus 616 --~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 689 (766)
++++|+..|.+++.++++++|+..|+++++++|++.-.+.+++ ..++++++...|+.+.+..|+.++++...|.
T Consensus 391 p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAe 470 (606)
T KOG0547|consen 391 PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAE 470 (606)
T ss_pred CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 6789999999999999999999999999999999999999888 5678999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCC------hHH-HHHHHHHHH-HcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q 004243 690 VLMDDQKEVEAVEELSKAIAFKPD------LQM-LHLRAAFYE-SIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 761 (766)
Q Consensus 690 ~~~~~g~~~~A~~~~~~al~~~p~------~~~-~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 761 (766)
++..++++++|++.|.+++++.|. +.. +...|.+.. -.+++..|++.+++|+++||....++..++.++.+.
T Consensus 471 iLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 471 ILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQR 550 (606)
T ss_pred HHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 322 223333332 259999999999999999999999999999888766
Q ss_pred hh
Q 004243 762 SH 763 (766)
Q Consensus 762 ~~ 763 (766)
.+
T Consensus 551 ~~ 552 (606)
T KOG0547|consen 551 GK 552 (606)
T ss_pred hh
Confidence 54
No 22
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.95 E-value=2.8e-28 Score=230.71 Aligned_cols=156 Identities=27% Similarity=0.377 Sum_probs=148.1
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
.+..+.+.+++++||+|+|++++|||||+|||+||+|||+|+.|||.|+.+..|++ ++...++|+.+|+|||||++..
T Consensus 33 ~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipL--q~t~~eAF~~lLrYiYtg~~~l 110 (620)
T KOG4350|consen 33 QSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPL--QETNSEAFRALLRYIYTGKIDL 110 (620)
T ss_pred HHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccc--ccccHHHHHHHHHHHhhcceec
Confidence 34456778899999999999999999999999999999999999999999999999 8888999999999999999985
Q ss_pred --CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccccccc
Q 004243 123 --FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (766)
Q Consensus 123 --~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~l 200 (766)
+..+.+++.|.+|++|+++.|.....+|+++.+. .+|+|.|+..|..|++++|.+.|+.|+.+|-.+++.+++|..|
T Consensus 111 ~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~L 189 (620)
T KOG4350|consen 111 AGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRL 189 (620)
T ss_pred ccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhh
Confidence 6778899999999999999999999999999999 9999999999999999999999999999999999999999877
Q ss_pred c
Q 004243 201 F 201 (766)
Q Consensus 201 ~ 201 (766)
.
T Consensus 190 S 190 (620)
T KOG4350|consen 190 S 190 (620)
T ss_pred h
Confidence 3
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=2.5e-24 Score=245.29 Aligned_cols=394 Identities=13% Similarity=-0.009 Sum_probs=310.4
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhccCC
Q 004243 339 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELRAWLFIAADDYESALRDTLALLALESN 417 (766)
Q Consensus 339 ~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 417 (766)
..+++ -...|-++.-..-...+....|+.++|+..+.++...+|.+. .+..+|.++...|++++|+..|+++++.+|+
T Consensus 3 ~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~ 81 (765)
T PRK10049 3 SWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ 81 (765)
T ss_pred hhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34444 445566677777778889999999999999999998777554 4566999999999999999999999999999
Q ss_pred cccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHH
Q 004243 418 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 497 (766)
Q Consensus 418 ~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 497 (766)
++. +...++.++...+++++|. ..++++++..|+++. +..+|.++...|++++|+
T Consensus 82 ~~~------a~~~la~~l~~~g~~~eA~------------------~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al 136 (765)
T PRK10049 82 NDD------YQRGLILTLADAGQYDEAL------------------VKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDEL 136 (765)
T ss_pred CHH------HHHHHHHHHHHCCCHHHHH------------------HHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHH
Confidence 984 7788899999999999985 445999999999999 999999999999999999
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHH-HHHHHHHHhcCCCCCChH-HHHHHHHHH
Q 004243 498 RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF-FLKAYILADTNLDPESST-YVIQLLEEA 574 (766)
Q Consensus 498 ~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~-~~~~~~l~~~~~~~~~~~-~~~~~~~~A 574 (766)
..++++++..|+++.++..+|.++...|..++|+..++++.. .|+. ... .............+.... ......++|
T Consensus 137 ~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~A 215 (765)
T PRK10049 137 RAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRA 215 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHH
Confidence 999999999999999999999999999999999999998887 6654 111 111111111111111110 001122666
Q ss_pred Hhchhhccc-----cc------hhHHh-hHHHHHHhCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHhccHHHHHHH
Q 004243 575 LRCPSDGLR-----KG------QALNN-LGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDE 639 (766)
Q Consensus 575 ~~~~~~~l~-----~~------~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~la~~~~~~g~~~~A~~~ 639 (766)
++.++..+. |. .+... +| .+...|++++|+..|+++++.. +..+...+|.++...|++++|+..
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 666666552 11 12222 34 4467899999999999999874 445666679999999999999999
Q ss_pred HHHHHHhccCCH----HHHHH----HhhhcCHHHHHHHHHHHHhcCCCC---------------chhHHHHHHHHHhCCC
Q 004243 640 MTKLLEKAQYSA----SAFEK----RSEYSDREMAKNDLNMATQLDPLR---------------TYPYRYRAAVLMDDQK 696 (766)
Q Consensus 640 ~~~~l~~~p~~~----~~~~~----~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~ 696 (766)
|++++...|.+. ..... +...+++++|+..++++....|.. ..++..+|.++...|+
T Consensus 295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 999998887652 22222 236799999999999999887732 3467789999999999
Q ss_pred HHHHHHHHHHHHhcCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 004243 697 EVEAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 697 ~~~A~~~~~~al~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 760 (766)
+++|++.+++++...|++.. +..+|.++...|++++|++.++++++++|+++.++..++.+...
T Consensus 375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 99999999999999999954 44899999999999999999999999999998877666554443
No 24
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.8e-24 Score=212.85 Aligned_cols=405 Identities=17% Similarity=0.137 Sum_probs=289.4
Q ss_pred HHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhh
Q 004243 324 MYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADD 400 (766)
Q Consensus 324 ~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~ 400 (766)
...|+..+..|++ |+..|.++|.++|.|...|.++..+|..+|+|++|++.-.+.++++|+....|. +|..+.-+|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 3467888888987 999999999999999999999999999999999999999999999997776665 9999999999
Q ss_pred HHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHH----hhhchHhhHHHhhhhhcccCccc------cHHHHH---
Q 004243 401 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV----RSWSPADCWIKLYDRWSSVDDIG------SLAVIN--- 467 (766)
Q Consensus 401 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~------~l~~~~--- 467 (766)
|++|+..|.+.|+.+|++.. ....+...+... ..+....- |..+.... +-..|.
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~------L~~gl~~a~~~~~~~~~~~~~p~~-------~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQ------LKTGLAQAYLEDYAADQLFTKPYF-------HEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcCCchHH------HHHhHHHhhhHHHHhhhhccCcHH-------HHHhhcChhhhhhhccHHHHHHH
Confidence 99999999999999999995 333344433111 11111111 11100000 011222
Q ss_pred HHHHcCCCChhHHHH-------HHHHHHhcCCH-HHHHHHHHHHHhcCCC---------------------chhhHHHHH
Q 004243 468 QMLINDPGKSFLRFR-------QSLLLLRLNCQ-KAAMRCLRLARNHSSS---------------------EHERLVYEG 518 (766)
Q Consensus 468 ~al~~~p~~~~~~~~-------la~~~~~~g~~-~~A~~~~~~a~~~~p~---------------------~~~~~~~lg 518 (766)
..++.+|.+...+.. .|.+... +.. ..+....-.+-...|. .......+|
T Consensus 153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lg 231 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPRLMKADGQLKGV-DELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELG 231 (539)
T ss_pred HHhhcCcHhhhcccccHHHHHHHHHHhcC-ccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHH
Confidence 233333333222211 1111000 000 0000000000000010 012345677
Q ss_pred HHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc-----------ch
Q 004243 519 WILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK-----------GQ 586 (766)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----------~~ 586 (766)
...+...+++.|++.|..++.++ .+ ..+.+.+..+...+ .+.+.+....++++. ..
T Consensus 232 naaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~-----------~~~~c~~~c~~a~E~gre~rad~klIak 299 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERG-----------KYAECIELCEKAVEVGRELRADYKLIAK 299 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhcc-----------HHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence 78888888888888888888888 55 66777777776666 555555544444431 23
Q ss_pred hHHhhHHHHHHhCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhc
Q 004243 587 ALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYS 661 (766)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~ 661 (766)
+...+|..|...++++.|+.+|++++.. .. ..+.......+++....+...-.+|.-..--...| ..|
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRT-------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 4455888999999999999999998876 33 34455566677777777777777777765555556 569
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 004243 662 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 662 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~a 740 (766)
++..|+..|.+++..+|+++..|.++|.+|.+.|.+..|+...+++++++|+....+ ..|.++..+.+|++|.+.|+++
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999995555 6799999999999999999999
Q ss_pred HccCCCChhHHHHHHHHHHhh
Q 004243 741 LCLDPNHMETLDLYNRARDQA 761 (766)
Q Consensus 741 l~~~p~~~~~~~~l~~~~~~~ 761 (766)
++.+|++.++...+.+.....
T Consensus 453 le~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHh
Confidence 999999999999998887754
No 25
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=6.3e-27 Score=258.06 Aligned_cols=145 Identities=14% Similarity=0.216 Sum_probs=139.7
Q ss_pred CCCCCCCceEEEE--cCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHH
Q 004243 49 LSLEEDDSVTFCV--RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 126 (766)
Q Consensus 49 ~~~~~~~dv~~~~--~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~ 126 (766)
+.++++|||+|+| +|++|+|||.||+++|+||++||+++|+ +.+|+| ++ ++++|+.||+|||||++. ++.+
T Consensus 4 ~~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l--~~-~~~~~~~~l~y~Ytg~~~-i~~~ 76 (534)
T PHA03098 4 FELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINL--NI-DYDSFNEVIKYIYTGKIN-ITSN 76 (534)
T ss_pred cccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEe--cC-CHHHHHHHHHHhcCCceE-EcHH
Confidence 4478999999998 9999999999999999999999999998 678999 78 999999999999999999 9999
Q ss_pred HHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCcccccccc
Q 004243 127 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIF 201 (766)
Q Consensus 127 ~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~l~ 201 (766)
++.+||.+|++|+++.|+..|+++|.+.++ .+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|-
T Consensus 77 ~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~ 150 (534)
T PHA03098 77 NVKDILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLS 150 (534)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCC
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999883
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1e-23 Score=215.06 Aligned_cols=298 Identities=17% Similarity=0.170 Sum_probs=207.8
Q ss_pred HHHHHHHH--HHcCCHHHHHHHHHHHHccCCCHHHHH-HHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHH
Q 004243 355 YKYRAVAK--MEEGQIRAAISEIDRIIVFKLSVDCLE-LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 431 (766)
Q Consensus 355 ~~~~a~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~-~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 431 (766)
+..+|..| ..+-+.++|+..|.+.-...++..+.. .+|..|+.+++|++|.++|+.+-++.|-... .....
T Consensus 320 lr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~------~meiy 393 (638)
T KOG1126|consen 320 LRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK------GMEIY 393 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------chhHH
Confidence 33444444 445567899999999555555444222 2999999999999999999999988887663 11111
Q ss_pred hH-HHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 004243 432 KL-LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (766)
Q Consensus 432 ~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 510 (766)
.. +...+..++. -..-+..+..+|+.|+.|..+|.+|.-+++++.|++.|++|++++|..
T Consensus 394 ST~LWHLq~~v~L-------------------s~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f 454 (638)
T KOG1126|consen 394 STTLWHLQDEVAL-------------------SYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF 454 (638)
T ss_pred HHHHHHHHhhHHH-------------------HHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc
Confidence 11 1111111110 011245556677777777777777777777777777777777777777
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHh
Q 004243 511 HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNN 590 (766)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 590 (766)
..++..+|.=+....+++.|...|++|+..+|.+
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh---------------------------------------------- 488 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH---------------------------------------------- 488 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh----------------------------------------------
Confidence 7777777777777777777777777777766665
Q ss_pred hHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHH
Q 004243 591 LGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMA 666 (766)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A 666 (766)
-.+|+++|.+|.++++++.|.-.|++|++++|.+.......| ..|+.++|
T Consensus 489 --------------------------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 489 --------------------------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred --------------------------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH
Confidence 245555555555555555555555555555555555544444 34555666
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004243 667 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDP 745 (766)
Q Consensus 667 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 745 (766)
+..|++|+.++|.++...+..|.+++..+++++|+..+++.-++-|+. .+++.+|.+|.+.|+.+.|+..|.-|+.++|
T Consensus 543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 666777777888888999999999999999999999999999999999 5556899999999999999999999999999
Q ss_pred CChh
Q 004243 746 NHME 749 (766)
Q Consensus 746 ~~~~ 749 (766)
.-.+
T Consensus 623 kg~~ 626 (638)
T KOG1126|consen 623 KGAQ 626 (638)
T ss_pred ccch
Confidence 8665
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.93 E-value=2.1e-21 Score=216.16 Aligned_cols=443 Identities=12% Similarity=0.022 Sum_probs=317.8
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhcCcccc--HhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHH--HHHHh
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYS--LAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQ--ERSLY 331 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 331 (766)
+...+..+.+.++.|+++.|+..|+++++.+|.+. ...++.++...|+-.++...+.+...+.+....... +..+.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 44677889999999999999999999999999985 335556666666644444444444443344444444 77888
Q ss_pred ccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004243 332 NLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTL 409 (766)
Q Consensus 332 ~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 409 (766)
..+++ |+..|+++++.+|+++.++..++..+...++.++|+..++++...+|....+..++.++...++..+|+..++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 88886 9999999999999999999999999999999999999999999999975555446666666788877999999
Q ss_pred HHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHH-
Q 004243 410 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL- 488 (766)
Q Consensus 410 ~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~- 488 (766)
++++.+|++.. ++..+.......|-...|...++....|....+...+....-+-.. ..+....
T Consensus 194 kll~~~P~n~e------~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v---------r~a~~~~~ 258 (822)
T PRK14574 194 EAVRLAPTSEE------VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV---------RMAVLPTR 258 (822)
T ss_pred HHHHhCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH---------hhcccccc
Confidence 99999999994 5566666666667766776555444444333332222111111111 0000000
Q ss_pred -hcC---CHHHHHHHHHHHHhcCCCchh-------hHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Q 004243 489 -RLN---CQKAAMRCLRLARNHSSSEHE-------RLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 557 (766)
Q Consensus 489 -~~g---~~~~A~~~~~~a~~~~p~~~~-------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 557 (766)
..+ -.+.|+..+++.+...|..|. +..-.-.++...|++.+++..|+..-......
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~------------- 325 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM------------- 325 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-------------
Confidence 011 235566666766663333222 22334456677788888888887665422111
Q ss_pred CCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC------ChH--HHHHHHHHHHH
Q 004243 558 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK------HTR--AHQGLARVYYL 629 (766)
Q Consensus 558 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~--~~~~la~~~~~ 629 (766)
|.-+....|..|+..+++++|+..|++++... +.+ ....|-.++..
T Consensus 326 --------------------------P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 326 --------------------------PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred --------------------------CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 23345667888888888999999888887653 112 24677788888
Q ss_pred hccHHHHHHHHHHHHHhccC---------------CHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 004243 630 KNELKAAYDEMTKLLEKAQY---------------SASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAV 690 (766)
Q Consensus 630 ~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 690 (766)
.+++++|..++++..+..|. ...+...++ ..|+..+|.+.+++.+...|.++.++..+|.+
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v 459 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASI 459 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88999999888888875441 112222222 46888999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHH
Q 004243 691 LMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 752 (766)
Q Consensus 691 ~~~~g~~~~A~~~~~~al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 752 (766)
+...|.+.+|...++.+..++|++. ....+|.++..+|++.+|.....++++..|+++.+..
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999984 4448899999999999999999999999999987654
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-21 Score=188.57 Aligned_cols=308 Identities=17% Similarity=0.104 Sum_probs=234.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhc-cCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHH
Q 004243 391 RAWLFIAADDYESALRDTLALLAL-ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 469 (766)
Q Consensus 391 ~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~a 469 (766)
++.++....+.++++.-++..... .|++.. .....+.+.....++++|+ ..|+..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~------i~~~~A~~~y~~rDfD~a~------------------s~Feei 288 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMY------IKTQIAAASYNQRDFDQAE------------------SVFEEI 288 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHH------HHHHHHHHHhhhhhHHHHH------------------HHHHHH
Confidence 455555555666666666655554 454442 3344555555555555553 334566
Q ss_pred HHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHH
Q 004243 470 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFL 549 (766)
Q Consensus 470 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 549 (766)
.+.+|-..+-.-...+++.-.++-.+---.-+.+.+++.-.++...-+|..|...++.++|+.+|++++++||+.
T Consensus 289 ~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~----- 363 (559)
T KOG1155|consen 289 RKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY----- 363 (559)
T ss_pred HhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch-----
Confidence 666665554444444444444443333333344555555556666667777777777778888888888777776
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh--HHHHHHHHHH
Q 004243 550 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVY 627 (766)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~la~~~ 627 (766)
..+|..+|.-|..+++...|+..|++|++++|. .+|+++|++|
T Consensus 364 -----------------------------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 364 -----------------------------------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred -----------------------------------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 567889999999999999999999999999655 5999999999
Q ss_pred HHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHH
Q 004243 628 YLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE 703 (766)
Q Consensus 628 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 703 (766)
..++...=|+-+|+++.+..|+++..|..+| .+++.++|+.+|.+++.....+..++..+|.+|.+.++.++|..+
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999 578999999999999999888999999999999999999999999
Q ss_pred HHHHHhc-------CCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhh
Q 004243 704 LSKAIAF-------KPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 704 ~~~al~~-------~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 762 (766)
|++.++. .|.. .+...++..+.+.+++++|..+..+++.-++.-.++..++..+.+.+.
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 9999873 3433 333368999999999999999999999998888899888888877654
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.3e-22 Score=192.58 Aligned_cols=368 Identities=14% Similarity=0.061 Sum_probs=286.0
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHH---HHHHHHhhhccC-CCchhHHHHHHHHh
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQY---SAYKLINSIISE-HKPTGWMYQERSLY 331 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~---~~~~~~~~~~~~-~~~~~~~~~~~~~~ 331 (766)
.-.++..|.++-+.|....|+..|..++...|++-.+ +...+... +.........+. ...-.-.+.+.++-
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~A-----WleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSA-----WLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHH-----HHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 4567889999999999999999999999988987665 22333322 222222222221 11112223333333
Q ss_pred c--cCcHHHHHHHHHHhc-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHH
Q 004243 332 N--LGREKIVDLNYASEL-DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRD 407 (766)
Q Consensus 332 ~--~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~ 407 (766)
. +.++++..+...+.. -|++...-...|.+...+.++++|+..|+.+.+.+| .-+...+...+++-..+-.+---.
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 2 333477777777777 788888888999999999999999999999999988 444444456666555554444444
Q ss_pred HHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHH
Q 004243 408 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 487 (766)
Q Consensus 408 ~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~ 487 (766)
-+.+..++.-.+ +....+|+.|...++.++|. ..|+++++++|....+|..+|.-|
T Consensus 319 A~~v~~idKyR~------ETCCiIaNYYSlr~eHEKAv------------------~YFkRALkLNp~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 319 AQNVSNIDKYRP------ETCCIIANYYSLRSEHEKAV------------------MYFKRALKLNPKYLSAWTLMGHEY 374 (559)
T ss_pred HHHHHHhccCCc------cceeeehhHHHHHHhHHHHH------------------HHHHHHHhcCcchhHHHHHhhHHH
Confidence 455566665555 47788899999999999984 455999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHH
Q 004243 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 567 (766)
Q Consensus 488 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~ 567 (766)
..+.+...|++.|++|++++|.+..+|+.+|.+|.-++...=|+-+|++|++..|++
T Consensus 375 vEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD----------------------- 431 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND----------------------- 431 (559)
T ss_pred HHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-----------------------
Confidence 999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh--HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004243 568 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNELKAAYDEMTKLLE 645 (766)
Q Consensus 568 ~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~ 645 (766)
...|..||.+|.+.++.++|+++|.+++..++. .++..+|.+|.+.++.++|...|++.++
T Consensus 432 -----------------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 432 -----------------SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -----------------hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 677999999999999999999999999999765 7999999999999999999999999986
Q ss_pred hccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH
Q 004243 646 KAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ 715 (766)
Q Consensus 646 ~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 715 (766)
... ..-..+|....+...|+.-+.+.+++++|..+..+++.-++.-+
T Consensus 495 ~~~-----------------------~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 495 VSE-----------------------LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred HHH-----------------------hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 521 01124455566677789999999999999999998887755443
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.5e-22 Score=195.61 Aligned_cols=420 Identities=16% Similarity=0.122 Sum_probs=304.9
Q ss_pred HHHHHhccCcH--HHHHHHHHHhcCCCC-----chHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhh
Q 004243 326 QERSLYNLGRE--KIVDLNYASELDPTL-----SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAA 398 (766)
Q Consensus 326 ~~~~~~~~~~~--A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~ 398 (766)
.|+++++..++ |++.|.-++..-|.- ...+.+.|..+.+.|+|+.|+..|+...+..|+....+++..+++..
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAI 322 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheec
Confidence 34444444443 666666666655532 34566778888899999999999999999999888888888899999
Q ss_pred hhHHHHHHHHHHHHhc--cCCccccccc----chhhhHHhHHHHHHhhhch-----HhhHHHhhhhhcc---cCcccc--
Q 004243 399 DDYESALRDTLALLAL--ESNYMMFHGR----VSGDHLVKLLNHHVRSWSP-----ADCWIKLYDRWSS---VDDIGS-- 462 (766)
Q Consensus 399 g~~~~A~~~~~~al~~--~p~~~~~~~~----~~a~~~l~~~~~~~~~~~~-----A~~~~~~~~~~~~---~~~~~~-- 462 (766)
|+.++-.+.|++.+.+ .|++..+... -..+..-+.-...+.+|++ |+..+-..-+.-. ..++.+
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~ 402 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC 402 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence 9999999999998873 1222111100 0011111111111222221 1111100000000 000000
Q ss_pred ---HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-hhhHHHHHHHHHH--CCCHHHHHHHHHH
Q 004243 463 ---LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYD--TGHREEALSRAEK 536 (766)
Q Consensus 463 ---l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~lg~~~~~--~g~~~~A~~~~~~ 536 (766)
++.+ ++-...|-..+.-...+-.+++.|+++.|++.++-.-+.+... ..+-.++..+++. -.++..|..+...
T Consensus 403 dwcle~l-k~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 403 DWCLESL-KASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred HHHHHHH-HHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 1111 1111112223344567788999999999999987665554332 3345566666655 3478899999999
Q ss_pred HHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc----chhHHhhHHHHHHhCCHHHHHHHHHHH
Q 004243 537 SISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK----GQALNNLGSIYVECGKLDQAENCYINA 611 (766)
Q Consensus 537 al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (766)
++.++.-+ .+..+.|... .+.|++++|.+.|+.++.. .++++++|..+..+|+.++|+++|-+.
T Consensus 482 aln~dryn~~a~~nkgn~~-----------f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIA-----------FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred HhcccccCHHHhhcCCcee-----------eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 99887666 4444444333 3345999999999999884 489999999999999999999999887
Q ss_pred Hcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHH
Q 004243 612 LDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYR 685 (766)
Q Consensus 612 l~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~ 685 (766)
-.+ ++.++++.++.+|..+.+..+|++++.++....|+++.++..++ +-|+..+|.+++-......|.+.+..-
T Consensus 551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie 630 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE 630 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence 665 88899999999999999999999999999999999999999999 348889999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 686 YRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 686 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
.+|..|....-+++|+.+|+++--+.|+...|. ..+.|+.+.|+|.+|...|+..-...|.+.+.+..|-++
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 999999999999999999999999999998888 569999999999999999999999999998887766554
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=7e-20 Score=192.92 Aligned_cols=476 Identities=15% Similarity=0.086 Sum_probs=330.0
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh--HHHHHHHHhccHHHHHH---HHhhhccCCCchhHHHHHHHH
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYK---LINSIISEHKPTGWMYQERSL 330 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~l~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~ 330 (766)
...+...++..+..|++++|++.+.+++..+|.+..+ .++.+|.++|+..+++. .+.-+.| .++.-|...+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 4556678889999999999999999999999988776 88999999998555554 3333444 6669999999998
Q ss_pred hccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHH------HHHHHHHHHhhhhHH
Q 004243 331 YNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC------LELRAWLFIAADDYE 402 (766)
Q Consensus 331 ~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~a~~~~~~g~~~ 402 (766)
...+.. |.-+|.+||+.+|.+....+.++..|.+.|+...|+..|.+++...|..+. .+..+..+...++-+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 888874 999999999999999999999999999999999999999999999993322 222567777788889
Q ss_pred HHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcc----------------------cCcc
Q 004243 403 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS----------------------VDDI 460 (766)
Q Consensus 403 ~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------------~~~~ 460 (766)
.|++.++.++....+-.. ..-+..++.++....+++.|...+........ ..+.
T Consensus 298 ~a~~~le~~~s~~~~~~~----~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEAS----LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred HHHHHHHHHHhhcccccc----ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 999999999883322221 23556777777777888887655533222000 0000
Q ss_pred cc--H------------------HHHHHHH-HcC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-chhhHH
Q 004243 461 GS--L------------------AVINQML-IND---PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS-EHERLV 515 (766)
Q Consensus 461 ~~--l------------------~~~~~al-~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~ 515 (766)
.+ | ..+..-+ +.+ .++++.++.++.++...|++.+|+..+..+....+. +..+|+
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 00 1 1111111 111 235667778888888888888888888887776553 356788
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc----------
Q 004243 516 YEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK---------- 584 (766)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------- 584 (766)
.+|.+|..+|.+++|++.|++++...|++ ++...++..+..+| +.++|++.+.+...|
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g-----------~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG-----------NHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC-----------CHHHHHHHHhcccCCCccchhhccc
Confidence 88888888888888888888888888888 77777777777666 222222222111000
Q ss_pred --------------------------------------------------------------------------------
Q 004243 585 -------------------------------------------------------------------------------- 584 (766)
Q Consensus 585 -------------------------------------------------------------------------------- 584 (766)
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence
Q ss_pred -------------------c----hhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CChH----HHHHHHHHHHHhccH
Q 004243 585 -------------------G----QALNNLGSIYVECGKLDQAENCYINALDI----KHTR----AHQGLARVYYLKNEL 633 (766)
Q Consensus 585 -------------------~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~----~~~~la~~~~~~g~~ 633 (766)
. +.+..+..++.+.+++++|......++.. .++. ..+....+-...+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 0 22334455566677777777777777665 1221 122222334566777
Q ss_pred HHHHHHHHHHHHh-----ccCCHHHHH-HHh--------------------------------------hhcCHHHHHHH
Q 004243 634 KAAYDEMTKLLEK-----AQYSASAFE-KRS--------------------------------------EYSDREMAKND 669 (766)
Q Consensus 634 ~~A~~~~~~~l~~-----~p~~~~~~~-~~~--------------------------------------~~~~~~~A~~~ 669 (766)
..|...++.++.. +|.....|. ... ..+.+.-|+..
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQE 762 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHH
Confidence 7777777777665 333333333 110 12455889999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhC--CC--------HHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCHHHHHHH
Q 004243 670 LNMATQLDPLRTYPYRYRAAVLMDD--QK--------EVEAVEELSKAIAFKPD---LQMLHLRAAFYESIGDLTSAIRD 736 (766)
Q Consensus 670 ~~~al~~~p~~~~~~~~la~~~~~~--g~--------~~~A~~~~~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~ 736 (766)
|-++...+|++|-.-..+|..+... ++ .-+++..+.+..++... ..+.|++|.+|...|=..-|+.+
T Consensus 763 y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~Y 842 (895)
T KOG2076|consen 763 YMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSY 842 (895)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 9999999999988887777766543 22 24566677666666332 37788999999999999999999
Q ss_pred HHHHHccCCCC
Q 004243 737 SQAALCLDPNH 747 (766)
Q Consensus 737 ~~~al~~~p~~ 747 (766)
|+++|++.|..
T Consensus 843 YekvL~~~p~~ 853 (895)
T KOG2076|consen 843 YEKVLEVSPKD 853 (895)
T ss_pred HHHHhCCCccc
Confidence 99999998653
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.9e-21 Score=191.37 Aligned_cols=423 Identities=17% Similarity=0.104 Sum_probs=304.6
Q ss_pred hhHHHHHHHHhccCcH-HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH------HccCC----------
Q 004243 321 TGWMYQERSLYNLGRE-KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRI------IVFKL---------- 383 (766)
Q Consensus 321 ~~~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a------l~~~~---------- 383 (766)
...++++.+++..+++ .....-..-.++..+....+..+.++....+|++|+..+.+. +..+|
T Consensus 50 ~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n 129 (611)
T KOG1173|consen 50 ADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELN 129 (611)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccC
Confidence 3334445555555554 222333333555666777888888888888888888887722 11111
Q ss_pred ----------CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHH--HH------Hh------
Q 004243 384 ----------SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN--HH------VR------ 439 (766)
Q Consensus 384 ----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~--~~------~~------ 439 (766)
.....+++|.+|..+.+.++|...|.+++..++.+.. +...+-... .. ..
T Consensus 130 ~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~E------a~~~lvs~~mlt~~Ee~~ll~~l~~a~ 203 (611)
T KOG1173|consen 130 SAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFE------AFEKLVSAHMLTAQEEFELLESLDLAM 203 (611)
T ss_pred cccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHH------HHHHHHHHHhcchhHHHHHHhcccHHh
Confidence 0111445888999999999999999999998888764 111111100 00 00
Q ss_pred -hhchHhhHHHhhhhhcc-cCccccHHHH-HHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHH
Q 004243 440 -SWSPADCWIKLYDRWSS-VDDIGSLAVI-NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 516 (766)
Q Consensus 440 -~~~~A~~~~~~~~~~~~-~~~~~~l~~~-~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 516 (766)
..+.......+|..... .....++..- +..+-.-.+++......+..++..+++.+..+..+..++.+|-++..+..
T Consensus 204 ~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~ 283 (611)
T KOG1173|consen 204 LTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPL 283 (611)
T ss_pred hhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHH
Confidence 01111111111111000 0000000000 01111112456777788888888888888888888888888888776655
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc--c--chhHHhh
Q 004243 517 EGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR--K--GQALNNL 591 (766)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~--~~~~~~l 591 (766)
...++...|+..+=...-.+.++..|+. -.|+..|.-+...+ ++.+|..++.++.. + +.+|...
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~-----------k~seARry~SKat~lD~~fgpaWl~f 352 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG-----------KYSEARRYFSKATTLDPTFGPAWLAF 352 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc-----------CcHHHHHHHHHHhhcCccccHHHHHH
Confidence 5448888888777777777788888888 77877777766665 78888888888743 3 6999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHH
Q 004243 592 GSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREM 665 (766)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~ 665 (766)
|..+...|+-++|+.+|..|-++ +.-.....+|.-|...++++-|.+.|.+++.+.|.++-++...| ..+.+.+
T Consensus 353 ghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~ 432 (611)
T KOG1173|consen 353 GHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPE 432 (611)
T ss_pred hHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHH
Confidence 99999999999999999999988 44456777899999999999999999999999999999999999 5789999
Q ss_pred HHHHHHHHHhcCC-------CCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHH
Q 004243 666 AKNDLNMATQLDP-------LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDS 737 (766)
Q Consensus 666 A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~ 737 (766)
|..+|+.++..-+ .....+.++|.++.+.+++++|+.+|++++.+.|.+...+ .+|.+|..+|+++.|+..|
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999983322 2245688999999999999999999999999999997766 8999999999999999999
Q ss_pred HHHHccCCCChhHHHHHHHHHHh
Q 004243 738 QAALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 738 ~~al~~~p~~~~~~~~l~~~~~~ 760 (766)
.++|.++|++.-+-..|+.+-+.
T Consensus 513 hKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 513 HKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999998888888876654
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=5.2e-23 Score=210.02 Aligned_cols=268 Identities=13% Similarity=0.130 Sum_probs=236.3
Q ss_pred HHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh----HHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHH
Q 004243 253 WQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA----GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQER 328 (766)
Q Consensus 253 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 328 (766)
.....++.++|..|++.++|++|.++|+.+-...|..... .....+.+...+...+.+-+--..+..|++|...|+
T Consensus 350 ~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GN 429 (638)
T KOG1126|consen 350 YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGN 429 (638)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcc
Confidence 3444678899999999999999999999999998876544 111122333335555544333334477999999999
Q ss_pred HHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHH
Q 004243 329 SLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESAL 405 (766)
Q Consensus 329 ~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~ 405 (766)
++-.+++. |+++|++|+.+||+.+.+|..+|.-+.....++.|..+|++++..+| ...+||-+|.+|.++++++.|.
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHH
Confidence 99888885 99999999999999999999999999999999999999999999999 5566777999999999999999
Q ss_pred HHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHH
Q 004243 406 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 485 (766)
Q Consensus 406 ~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~ 485 (766)
-.|++|++++|.+.. ....+|.++...++.++|. ..+++|+.++|.++...+.+|.
T Consensus 510 ~~fqkA~~INP~nsv------i~~~~g~~~~~~k~~d~AL------------------~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 510 FHFQKAVEINPSNSV------ILCHIGRIQHQLKRKDKAL------------------QLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred HHHHhhhcCCccchh------HHhhhhHHHHHhhhhhHHH------------------HHHHHHHhcCCCCchhHHHHHH
Confidence 999999999999995 7888999999999999995 4559999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 486 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
++..++++++|+..+++..+..|++..+++.+|.+|.+.|+.+.|+..|.-|..++|.-
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999985
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=7.9e-19 Score=177.68 Aligned_cols=569 Identities=13% Similarity=0.020 Sum_probs=279.8
Q ss_pred hhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccc-ccccc--cCchHHHHHHhhc----CchhHHHHHhhhhhhh
Q 004243 158 IEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK-VMKIF--CSSEATERLANVG----HASFLLYYFLSQVAME 230 (766)
Q Consensus 158 ~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~-f~~l~--~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 230 (766)
|.|--....-|..-....=...+..+|.+--..+-.+++ |++-+ -.++...-++..+ +.|-.+|.- +..
T Consensus 282 P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~k----A~d 357 (913)
T KOG0495|consen 282 PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRFLPTSVRLWLK----AAD 357 (913)
T ss_pred CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHhCCCChhhhhh----HHh
Confidence 556555556665555555555666666665555655555 33321 1122211111111 112222211 111
Q ss_pred cccchhhHHHHHHHHhhcchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHH-HHHhccHHHHHH
Q 004243 231 KDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARA-KYKVGQQYSAYK 309 (766)
Q Consensus 231 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~-~~~~~~a~~~~~ 309 (766)
+......-..++.+.++..+.+... -.......+.++|+.++.+|++.-|.....-++.. +..+..+...++
T Consensus 358 LE~~~~~K~RVlRKALe~iP~sv~L-------WKaAVelE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLN 430 (913)
T KOG0495|consen 358 LESDTKNKKRVLRKALEHIPRSVRL-------WKAAVELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLN 430 (913)
T ss_pred hhhHHHHHHHHHHHHHHhCCchHHH-------HHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122223444444444443321 12223334555566666666666555543322221 222333555555
Q ss_pred HHhhhccCCCchhHHHHHHHHhccCcH--HHHHHHHHHhcCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 310 LINSIISEHKPTGWMYQERSLYNLGRE--KIVDLNYASELDP-----TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 382 (766)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 382 (766)
++.+.+| .++..|+..+..--.+|+- ..+...+++..-. -+-..|+..|......|-.--+......++.+.
T Consensus 431 kaRe~ip-td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig 509 (913)
T KOG0495|consen 431 KAREIIP-TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG 509 (913)
T ss_pred HHHhhCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc
Confidence 5555555 4555555554444444432 2233333322111 122344444444444444444444444443332
Q ss_pred CCHH----HHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHH----------
Q 004243 383 LSVD----CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI---------- 448 (766)
Q Consensus 383 ~~~~----~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~---------- 448 (766)
-..+ .+..-+..+.+.+-++-|...|..+++.+|.... .+.....+...-|..+.-..++
T Consensus 510 vEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~s------lWlra~~~ek~hgt~Esl~Allqkav~~~pka 583 (913)
T KOG0495|consen 510 VEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKS------LWLRAAMFEKSHGTRESLEALLQKAVEQCPKA 583 (913)
T ss_pred cccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhH------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc
Confidence 2111 1222444444455555555555555555554442 2222222222212111111000
Q ss_pred ----Hh--hhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHH
Q 004243 449 ----KL--YDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 522 (766)
Q Consensus 449 ----~~--~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~ 522 (766)
-+ -.+|...+--.+...+.++++.+|++-+.|+..-.+.....+++.|...|.++....|. ..+|+.-+.+..
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er 662 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLER 662 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHH
Confidence 00 01111111111133345555566665556655555555556666666666655555443 445555555555
Q ss_pred HCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc--c--chhHHhhHHHHHH
Q 004243 523 DTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR--K--GQALNNLGSIYVE 597 (766)
Q Consensus 523 ~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~--~~~~~~lg~~~~~ 597 (766)
.+++.++|+..++++++..|++ ..|..+|..+.+.+ +.+.|.+.|...+. | ...|..++.+-..
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~-----------~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME-----------NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH-----------HHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 5666666666666666666665 55555555555444 55555555555554 2 3555556666555
Q ss_pred hCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHh
Q 004243 598 CGKLDQAENCYINALDIKH--TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQ 675 (766)
Q Consensus 598 ~g~~~~A~~~~~~al~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~ 675 (766)
.|+.-.|...++++.-.+| +..|....+.-.+.|+.+.|...+.++++..|+++..|.....+.....-...+..|++
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 6666666666666555433 23444444445555666666666666666666665555444422111000112222333
Q ss_pred cCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHH
Q 004243 676 LDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 754 (766)
Q Consensus 676 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 754 (766)
.-.+++.++...|.++....++++|.+.|.++++.+|++ ..|-..-..+...|.-++-.+.|.+...-.|.+.+.|...
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 334567778888888888888888888888888888888 4555666677778888888888888888888888777655
Q ss_pred HH
Q 004243 755 NR 756 (766)
Q Consensus 755 ~~ 756 (766)
.+
T Consensus 892 SK 893 (913)
T KOG0495|consen 892 SK 893 (913)
T ss_pred hh
Confidence 43
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=5.4e-21 Score=203.75 Aligned_cols=304 Identities=14% Similarity=0.038 Sum_probs=218.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHH
Q 004243 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 431 (766)
Q Consensus 353 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 431 (766)
...+.+|..+...|++++|+..|+++++.+|+.. .+..+|.++...|++++|+..+++++...+....
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----------- 104 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE----------- 104 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH-----------
Confidence 4456667888888888888888888888888443 4455888888888888888888887763221110
Q ss_pred hHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 004243 432 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 511 (766)
Q Consensus 432 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 511 (766)
.....+..+|.+|...|++++|+..|+++++..|.+.
T Consensus 105 -------------------------------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~ 141 (389)
T PRK11788 105 -------------------------------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE 141 (389)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH
Confidence 0113456677777778888888888888877777777
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHh
Q 004243 512 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNN 590 (766)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 590 (766)
.++..++.++...|++++|++.++++++..|.. ... ....+..
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~ 185 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------------------IAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------------------HHHHHHH
Confidence 777778888888888888888888777766553 000 0123556
Q ss_pred hHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCH-HHHHHHh----hhcCH
Q 004243 591 LGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA-SAFEKRS----EYSDR 663 (766)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~----~~~~~ 663 (766)
+|.++...|++++|+..|+++++.. ...++..+|.++...|++++|++.++++++..|.+. .++..++ ..|+.
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 7777777888888888888877763 445777778888888888888888888877776653 2333333 45778
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 004243 664 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYES---IGDLTSAIRDSQAA 740 (766)
Q Consensus 664 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~---~g~~~~A~~~~~~a 740 (766)
++|+..++++++..|+.. .+..+|.++...|++++|+..++++++..|+...+..+...+.. .|+..+|+..+++.
T Consensus 266 ~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 266 AEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 888888888888888664 44889999999999999999999999999999777644333332 45888888777766
Q ss_pred H----ccCCCC
Q 004243 741 L----CLDPNH 747 (766)
Q Consensus 741 l----~~~p~~ 747 (766)
+ +.+|++
T Consensus 345 ~~~~~~~~p~~ 355 (389)
T PRK11788 345 VGEQLKRKPRY 355 (389)
T ss_pred HHHHHhCCCCE
Confidence 5 455654
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=9.6e-20 Score=203.02 Aligned_cols=417 Identities=13% Similarity=-0.047 Sum_probs=318.8
Q ss_pred CCchhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH---HH
Q 004243 318 HKPTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL---RA 392 (766)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~a 392 (766)
..+...+..+...+..|++ |+..|+++++.+|+++.+...++.++...|+.++|+..+++++ +|.+..+.. +|
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA 109 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAA 109 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHH
Confidence 4566777778888889986 9999999999999997555588888899999999999999999 553333332 57
Q ss_pred HHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHc
Q 004243 393 WLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN 472 (766)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~ 472 (766)
.++...|++++|++.|+++++.+|+++. ++..++..+...++.++|. ..+.++...
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~------~l~gLa~~y~~~~q~~eAl------------------~~l~~l~~~ 165 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPD------LISGMIMTQADAGRGGVVL------------------KQATELAER 165 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHhhcCCHHHHH------------------HHHHHhccc
Confidence 8999999999999999999999999984 6667778888888888874 445778888
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHH--
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL-- 549 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~-- 549 (766)
+|..... ..++.++...++..+|++.++++++.+|++.+++..+..++...|-...|.+...+--...... ..+..
T Consensus 166 dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~ 244 (822)
T PRK14574 166 DPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERD 244 (822)
T ss_pred CcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHH
Confidence 8875554 5566666667888779999999999999999999999999999999999987776533322111 11111
Q ss_pred HHHHHHhcCCCCC-ChHHHHHHHHHHHhchhhccc-----cc------hhHHhhHHHHHHhCCHHHHHHHHHHHHccC--
Q 004243 550 KAYILADTNLDPE-SSTYVIQLLEEALRCPSDGLR-----KG------QALNNLGSIYVECGKLDQAENCYINALDIK-- 615 (766)
Q Consensus 550 ~~~~l~~~~~~~~-~~~~~~~~~~~A~~~~~~~l~-----~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 615 (766)
.+.........+. .......-.+.|+..+++.+. |. .+....-.++...|++.+++..|+......
T Consensus 245 ~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 245 AAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 1111111121111 111222355666666666543 21 233455566788999999999999888663
Q ss_pred -ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccC------CH----HHHHHHhhhcCHHHHHHHHHHHHhcCC------
Q 004243 616 -HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY------SA----SAFEKRSEYSDREMAKNDLNMATQLDP------ 678 (766)
Q Consensus 616 -~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~----~~~~~~~~~~~~~~A~~~~~~al~~~p------ 678 (766)
|+.+....|..|...+++++|...|.+++...|. .. ..++..-..+++++|...+++..+..|
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 6678899999999999999999999999876532 11 234445578999999999999887555
Q ss_pred ---------CCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHccCCCCh
Q 004243 679 ---------LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHM 748 (766)
Q Consensus 679 ---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 748 (766)
+...+...++.++...|++.+|++.+++.+...|.+..+. .+|.++...|++.+|.+.++.++.++|++.
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSL 484 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccH
Confidence 2256677789999999999999999999999999996555 889999999999999999999999999998
Q ss_pred hHHHHHHHHHHhh
Q 004243 749 ETLDLYNRARDQA 761 (766)
Q Consensus 749 ~~~~~l~~~~~~~ 761 (766)
.+...+..+...+
T Consensus 485 ~~~~~~~~~al~l 497 (822)
T PRK14574 485 ILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHhh
Confidence 8877666555443
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1.8e-18 Score=175.19 Aligned_cols=289 Identities=13% Similarity=0.057 Sum_probs=257.9
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcccc
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 542 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 542 (766)
...|..+++..|.....|...+..-...|..+.-...+++++...|.....|...+..+...|+...|...+.++++.+|
T Consensus 536 rAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 536 RAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc--c-chhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CC
Q 004243 543 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR--K-GQALNNLGSIYVECGKLDQAENCYINALDI--KH 616 (766)
Q Consensus 543 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~ 616 (766)
++ +.|...-....... .+++|...+.++.. + ..+|+.-+.+...+++.++|+..++++++. +.
T Consensus 616 nseeiwlaavKle~en~-----------e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f 684 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEFEND-----------ELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF 684 (913)
T ss_pred CcHHHHHHHHHHhhccc-----------cHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence 99 88887777766665 78888888888754 2 488999999999999999999999999998 45
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhh----hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 004243 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLM 692 (766)
Q Consensus 617 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 692 (766)
...|..+|+++..+++.+.|.+.|...+...|.....|..++. .|...+|...++++.-.+|.++..|...-.+-.
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 6799999999999999999999999999999999999999983 467889999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhcCCChHH-------------------------------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 693 DDQKEVEAVEELSKAIAFKPDLQM-------------------------------LHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 693 ~~g~~~~A~~~~~~al~~~p~~~~-------------------------------~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
+.|+.++|.....+|++..|++.. +...|.++....++++|.+.|.+++
T Consensus 765 R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987776522 2245777778889999999999999
Q ss_pred ccCCCChhHHHHHHHHHHhhh
Q 004243 742 CLDPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 742 ~~~p~~~~~~~~l~~~~~~~~ 762 (766)
+++|++.++|..+-+...+..
T Consensus 845 k~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred ccCCccchHHHHHHHHHHHhC
Confidence 999999999988877666554
No 38
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3e-19 Score=171.36 Aligned_cols=290 Identities=16% Similarity=0.095 Sum_probs=257.6
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcccc
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 542 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 542 (766)
..++-.-...-|++...+..+|.++...|++.+|+-.|+++.-.+|......-.+|.++.+.|+++.-.......+.+..
T Consensus 218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~ 297 (564)
T KOG1174|consen 218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK 297 (564)
T ss_pred HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh
Confidence 33444555667889999999999999999999999999999999999999999999999999999988888888887765
Q ss_pred ch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc----chhHHhhHHHHHHhCCHHHHHHHHHHHHccCC-
Q 004243 543 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK----GQALNNLGSIYVECGKLDQAENCYINALDIKH- 616 (766)
Q Consensus 543 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~- 616 (766)
.. ..|+.-+..+.... ++..|+.+-++.++. ..++...|.++...|+.++|+-.|+.|..+.|
T Consensus 298 ~ta~~wfV~~~~l~~~K-----------~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEK-----------KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred cchhhhhhhhhhhhhhh-----------hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 55 66776666666665 889999988888872 48899999999999999999999999999964
Q ss_pred -hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhh------hcCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 004243 617 -TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE------YSDREMAKNDLNMATQLDPLRTYPYRYRAA 689 (766)
Q Consensus 617 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~------~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 689 (766)
-+.|.++-.+|...|++.+|...-+.++...|+++..+...|. -.-.++|...++++++++|....+-..+|.
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 4689999999999999999999999999999999999888871 133599999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhh
Q 004243 690 VLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 690 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
++...|+++.++..+++.+...|+......+|.+....+.+.+|..+|..||.++|++..++.++.++++..+.
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred HHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCC
Confidence 99999999999999999999999998888999999999999999999999999999999999999998877653
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.6e-20 Score=200.05 Aligned_cols=254 Identities=18% Similarity=0.064 Sum_probs=206.4
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----hhhHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEGWILYDTGHREEALSRAEKSI 538 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (766)
+..+.++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+..|++++
T Consensus 55 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l 134 (389)
T PRK11788 55 IDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV 134 (389)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344467777777777777777777777777777777777666642221 2455666777777777777777777777
Q ss_pred ccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh-
Q 004243 539 SIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT- 617 (766)
Q Consensus 539 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~- 617 (766)
+.+|.. ..++..++.++...|++++|++.++++++..+.
T Consensus 135 ~~~~~~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 135 DEGDFA----------------------------------------EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred cCCcch----------------------------------------HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 655543 456788899999999999999999999887422
Q ss_pred ------HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCC-chhHHH
Q 004243 618 ------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLR-TYPYRY 686 (766)
Q Consensus 618 ------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~-~~~~~~ 686 (766)
..+..+|.++...|++++|+..++++++..|+...++..++ ..|++++|+..+++++..+|.+ ..++..
T Consensus 175 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 175 LRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK 254 (389)
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH
Confidence 25678999999999999999999999999999998888887 5699999999999999998876 567889
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHH
Q 004243 687 RAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 756 (766)
Q Consensus 687 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 756 (766)
++.+|...|++++|+..++++++..|+...+..++.++...|++++|+..++++++.+|++......+..
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 9999999999999999999999999998777789999999999999999999999999998766654443
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8e-20 Score=182.24 Aligned_cols=444 Identities=14% Similarity=0.077 Sum_probs=301.0
Q ss_pred HHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCcHHH
Q 004243 259 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKI 338 (766)
Q Consensus 259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 338 (766)
+-..|+..+..|+|+.|+..|..++.++|.+... |.++..+..... ....|+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvl-----ySnrsaa~a~~~-----------------------~~~~al 56 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVL-----YSNRSAAYASLG-----------------------SYEKAL 56 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccch-----hcchHHHHHHHh-----------------------hHHHHH
Confidence 3457899999999999999999999999987644 333333222222 122366
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhh-------------------
Q 004243 339 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAA------------------- 398 (766)
Q Consensus 339 ~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~------------------- 398 (766)
+.-.+.++++|+-+.+|..+|..+.-+|+|++|+..|.+.++.+|+...+.. ++.++...
T Consensus 57 ~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 57 KDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred HHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 7777777788888888888888888888888888888888888876665554 55555111
Q ss_pred --hhHHHHHHHHHHHHhccCCccc---c-cccchhhhHHhHHHHHHhhhchHhhHHHh----hhhhcccCccccHHHHHH
Q 004243 399 --DDYESALRDTLALLALESNYMM---F-HGRVSGDHLVKLLNHHVRSWSPADCWIKL----YDRWSSVDDIGSLAVINQ 468 (766)
Q Consensus 399 --g~~~~A~~~~~~al~~~p~~~~---~-~~~~~a~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~~~l~~~~~ 468 (766)
-++--.-..|...++..|.++. . ...-.....++.+.........+...... ............+.....
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~e 216 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTE 216 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHH
Confidence 0111122234444444444442 1 10000111111111000000000000000 000000000000111111
Q ss_pred HHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHH
Q 004243 469 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 547 (766)
Q Consensus 469 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~ 547 (766)
-.+ .-......-.+|.......++..|++.|..++.++ .+...+.+.+.+|+..|.+.+.+....++++..... .-+
T Consensus 217 e~~-~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 217 ERR-VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred HHH-HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence 000 11233456788999999999999999999999999 888899999999999999999999999999887776 556
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh--HHHHHHHH
Q 004243 548 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLAR 625 (766)
Q Consensus 548 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~la~ 625 (766)
..++..+...| ......++++.++..|.+++.+-.. ..+.......++++...+...-+++. .....-|.
T Consensus 295 klIak~~~r~g----~a~~k~~~~~~ai~~~~kaLte~Rt----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 295 KLIAKALARLG----NAYTKREDYEGAIKYYQKALTEHRT----PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGN 366 (539)
T ss_pred HHHHHHHHHhh----hhhhhHHhHHHHHHHHHHHhhhhcC----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence 66777776633 4445557999999999887764222 55556666677777776665555433 34455699
Q ss_pred HHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHH
Q 004243 626 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV 701 (766)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 701 (766)
.++..|+|..|+..|.+++..+|+++..|.+++ .++.+..|+...+++++++|+...+|...|.++..+.+|++|+
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 004243 702 EELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 702 ~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~a 740 (766)
+.|+++++.+|++..+. .+..|...+.......+.++++
T Consensus 447 eay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~ 486 (539)
T KOG0548|consen 447 EAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRA 486 (539)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence 99999999999995544 6677777654444555555553
No 41
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=9.6e-20 Score=170.54 Aligned_cols=311 Identities=16% Similarity=0.127 Sum_probs=250.3
Q ss_pred HHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhc
Q 004243 253 WQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 332 (766)
Q Consensus 253 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (766)
+....-++.+|..++..|++.+|+..|..|++.+|.+..+ +++++ ..|+.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~a-----ifrRa-------------------------T~yLA 84 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQA-----IFRRA-------------------------TVYLA 84 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHH-----HHHHH-------------------------HHHhh
Confidence 3456678899999999999999999999999999988766 33333 34444
Q ss_pred cCc--HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHH--------------HHH--HHHH
Q 004243 333 LGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC--------------LEL--RAWL 394 (766)
Q Consensus 333 ~~~--~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~--~a~~ 394 (766)
.|+ .|+..+.+++++.|+...+...+|.+++++|++++|...|++++..+|+... +.+ ....
T Consensus 85 mGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 85 MGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred hcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 454 4999999999999999999999999999999999999999999999883321 111 4445
Q ss_pred HHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCC
Q 004243 395 FIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP 474 (766)
Q Consensus 395 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p 474 (766)
+...|++..|+.....++++.|-+.. .+...+.++...+....| |..+..+-++..
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda~------l~~~Rakc~i~~~e~k~A------------------I~Dlk~askLs~ 220 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDAS------LRQARAKCYIAEGEPKKA------------------IHDLKQASKLSQ 220 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchhH------HHHHHHHHHHhcCcHHHH------------------HHHHHHHHhccc
Confidence 56679999999999999999999985 667788888888887777 455688888999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHH------------HHHHHHCCCHHHHHHHHHHHHcccc
Q 004243 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE------------GWILYDTGHREEALSRAEKSISIER 542 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p 542 (766)
++.+.++.++.+++..|+.+.++...+..++++|++...+-.+ +.-....++|.++++..++.++.+|
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999985443221 2334456667777777777777666
Q ss_pred ch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHH
Q 004243 543 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRA 619 (766)
Q Consensus 543 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 619 (766)
.. ... ...+..+..++...|++.+|++...+++..+ +.++
T Consensus 301 ~~~~ir-------------------------------------~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~ 343 (504)
T KOG0624|consen 301 EETMIR-------------------------------------YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQV 343 (504)
T ss_pred ccccee-------------------------------------eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHH
Confidence 63 100 1334556677888899999999999999984 4568
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHH
Q 004243 620 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 654 (766)
Q Consensus 620 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 654 (766)
+...|.+|.....|+.|+..|+++.+.++++..+.
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 88899999999999999999999999998887663
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=2.3e-19 Score=173.72 Aligned_cols=417 Identities=15% Similarity=0.095 Sum_probs=299.8
Q ss_pred HHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCcH-
Q 004243 258 ALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGRE- 336 (766)
Q Consensus 258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 336 (766)
.-.++|++++++.+|.+|+++|+.|+..-|....-.- .......|..+...|++
T Consensus 239 lkmnigni~~kkr~fskaikfyrmaldqvpsink~~r-------------------------ikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 239 LKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMR-------------------------IKILNNIGVTFIQAGQYD 293 (840)
T ss_pred eeeeecceeeehhhHHHHHHHHHHHHhhccccchhhH-------------------------HHHHhhcCeeEEecccch
Confidence 3457899999999999999999999987665443211 11122344455557776
Q ss_pred -HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------------CHHH-HHHHH---HHHHh--
Q 004243 337 -KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL------------SVDC-LELRA---WLFIA-- 397 (766)
Q Consensus 337 -A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~------------~~~~-~~~~a---~~~~~-- 397 (766)
|+..|+..++..|+... -+++..|++..|+-++-.+.|.+.+.+.. +|.. +...+ ..+..
T Consensus 294 dainsfdh~m~~~pn~~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 294 DAINSFDHCMEEAPNFIA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hhHhhHHHHHHhCccHHh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 89999999998887544 45677888899999999999998875422 1111 11111 11111
Q ss_pred ---hhhHHHHHHHHHHHHh--ccCCccc------------cc-c-cchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccC
Q 004243 398 ---ADDYESALRDTLALLA--LESNYMM------------FH-G-RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVD 458 (766)
Q Consensus 398 ---~g~~~~A~~~~~~al~--~~p~~~~------------~~-~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 458 (766)
..+.++|+..--+++. +.|+... .+ . ..+.-...+--+...+.++.|.+.++.++...+
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn-- 450 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN-- 450 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc--
Confidence 1222333333333332 3333321 00 0 012223334445667888888877755554100
Q ss_pred ccccHHHHHHHHHcCCCChhHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHH
Q 004243 459 DIGSLAVINQMLINDPGKSFLRFRQSLLLLR--LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 536 (766)
Q Consensus 459 ~~~~l~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (766)
.....+-.++..+++. -.++..|..+.+.++..+.-++.++.+.|.+-+..|++++|.+.|++
T Consensus 451 ---------------k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 451 ---------------KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred ---------------hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 0111222334434433 34678888888888888888888888889888889999999999999
Q ss_pred HHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhc----cccchhHHhhHHHHHHhCCHHHHHHHHHHH
Q 004243 537 SISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG----LRKGQALNNLGSIYVECGKLDQAENCYINA 611 (766)
Q Consensus 537 al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~----l~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (766)
++..+.+. ++.++.|.....++ ++++|+++|-+. +...+++..++.+|..+.+..+|++++.++
T Consensus 516 al~ndasc~ealfniglt~e~~~-----------~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALG-----------NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhc-----------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 98877777 77877777766665 888888888765 235789999999999999999999999999
Q ss_pred Hcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHH
Q 004243 612 LDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYR 685 (766)
Q Consensus 612 l~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~ 685 (766)
..+ ++|..+..+|.+|-+.|+..+|.+++-......|-+.+....++ ...-.++|+.+|+++.-+.|+......
T Consensus 585 ~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 585 NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 998 67889999999999999999999999999999999988877777 234459999999999999999988889
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcC
Q 004243 686 YRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIG 728 (766)
Q Consensus 686 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g 728 (766)
..+.++.+.|+|.+|.+.|+..-...|.+ ..+..+..+...+|
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 99999999999999999999999999988 55555655555554
No 43
>PLN03077 Protein ECB2; Provisional
Probab=99.88 E-value=9.3e-19 Score=204.39 Aligned_cols=457 Identities=12% Similarity=-0.002 Sum_probs=340.9
Q ss_pred HHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccH---HHHHHHHhhhccCCCchhHHHHHHHHhcc
Q 004243 257 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQ---YSAYKLINSIISEHKPTGWMYQERSLYNL 333 (766)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (766)
..+..+-..|.+.|++++|...|+++...+. ..+..+...+.+.|.. ...+.++...-...+..++......+...
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~-~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~ 301 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDC-ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCc-chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Confidence 3566677889999999999999999765333 3445666777777764 44444444332223344555555555555
Q ss_pred Cc--HHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004243 334 GR--EKIVDLNYASELD-PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLA 410 (766)
Q Consensus 334 ~~--~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 410 (766)
++ .|.+.+..+++.. +.+...+..+...|.+.|++++|...|++.. .|+...|..+...|.+.|++++|+..|++
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55 3888887777653 3457788999999999999999999999975 45666677789999999999999999998
Q ss_pred HHh--ccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcC-CCChhHHHHHHHHH
Q 004243 411 LLA--LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLL 487 (766)
Q Consensus 411 al~--~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~-p~~~~~~~~la~~~ 487 (766)
+.+ ..|+... +..+-..+...|.++.|... +..+.+.. ..+...+..+...|
T Consensus 380 M~~~g~~Pd~~t-------~~~ll~a~~~~g~~~~a~~l------------------~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 380 MEQDNVSPDEIT-------IASVLSACACLGDLDVGVKL------------------HELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred HHHhCCCCCcee-------HHHHHHHHhccchHHHHHHH------------------HHHHHHhCCCcchHHHHHHHHHH
Confidence 865 4576663 23333344555666666433 34555443 23566788899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcc-ccchHHHHHHHHHHHhcCCCCCChHH
Q 004243 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-ERTFEAFFLKAYILADTNLDPESSTY 566 (766)
Q Consensus 488 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~l~~~~~~~~~~~~ 566 (766)
.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|+..|++.... .|+...+..+..++...+
T Consensus 435 ~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g-------- 503 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG-------- 503 (857)
T ss_pred HHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc--------
Confidence 999999999999998644 35668999999999999999999999998854 455566666666666665
Q ss_pred HHHHHHHHHhchhhcccc-----chhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHH
Q 004243 567 VIQLLEEALRCPSDGLRK-----GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMT 641 (766)
Q Consensus 567 ~~~~~~~A~~~~~~~l~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 641 (766)
.++.+.+.+...++. ...++.+...|.+.|+.++|...|+.. ..+..+|..+...|...|+.++|++.|+
T Consensus 504 ---~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 504 ---ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred ---hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 677777766666442 356778889999999999999999887 4566789999999999999999999999
Q ss_pred HHHHh--ccCCHHHHH---HHhhhcCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 642 KLLEK--AQYSASAFE---KRSEYSDREMAKNDLNMATQLDPL--RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 642 ~~l~~--~p~~~~~~~---~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
++.+. .|+...... ..+..|+.++|...|+...+..+- +...|..+..++.+.|++++|.+.+++. ...|+.
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~ 657 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP 657 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH
Confidence 98864 455544322 223678899999999988743322 3468888999999999999999999875 467888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q 004243 715 QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 758 (766)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 758 (766)
..|..+-..+...|+.+.|....+++++++|+++..+..+..+.
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 77776655667789999999999999999999988887776554
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.6e-20 Score=183.37 Aligned_cols=365 Identities=15% Similarity=0.060 Sum_probs=202.0
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccC
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (766)
.+..++..|.+|....+.++|...|.+|+..++....+-...+-...-.+.+.++....+.-.....-...+-..++...
T Consensus 140 essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~ 219 (611)
T KOG1173|consen 140 ESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELK 219 (611)
T ss_pred hhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhh
Confidence 34567889999999999999999999999998887766222222222222222222221100000000000000011000
Q ss_pred -----c-HHHHHHH-HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHH-HHHHHHhhhhHHHHH
Q 004243 335 -----R-EKIVDLN-YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLEL-RAWLFIAADDYESAL 405 (766)
Q Consensus 335 -----~-~A~~~~~-~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~-~a~~~~~~g~~~~A~ 405 (766)
+ +++..-. ..+-.-.++......++.-++..+++.+..+.++..++.+| .+.++-. +| ++..+|+..+=.
T Consensus 220 ~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf 298 (611)
T KOG1173|consen 220 LCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLF 298 (611)
T ss_pred hhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHH
Confidence 0 0000000 01111123455556666666666666666666666666666 3333333 44 556666665555
Q ss_pred HHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHH
Q 004243 406 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 485 (766)
Q Consensus 406 ~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~ 485 (766)
-.-.+..+..|+.+. .|..+|..|..++.+.+|..++ .++..++|....+|...|.
T Consensus 299 ~lsh~LV~~yP~~a~------sW~aVg~YYl~i~k~seARry~------------------SKat~lD~~fgpaWl~fgh 354 (611)
T KOG1173|consen 299 LLSHKLVDLYPSKAL------SWFAVGCYYLMIGKYSEARRYF------------------SKATTLDPTFGPAWLAFGH 354 (611)
T ss_pred HHHHHHHHhCCCCCc------chhhHHHHHHHhcCcHHHHHHH------------------HHHhhcCccccHHHHHHhH
Confidence 555555666666663 5566666666666666664333 5666666666666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChH
Q 004243 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESST 565 (766)
Q Consensus 486 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~ 565 (766)
.+...|..++|+..|..|-+..|........+|.-|.++++++-|.+.|.+|+.+.|++
T Consensus 355 sfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D--------------------- 413 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD--------------------- 413 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---------------------
Confidence 66666666666666666666666665556666666666666666666666666666665
Q ss_pred HHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CC-----hHHHHHHHHHHHHhccHHHH
Q 004243 566 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KH-----TRAHQGLARVYYLKNELKAA 636 (766)
Q Consensus 566 ~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~-----~~~~~~la~~~~~~g~~~~A 636 (766)
+...+.+|.+....+.|.+|..+|+.++.. .+ ...+.++|.++.+++.+++|
T Consensus 414 -------------------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 414 -------------------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred -------------------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 444555566666666666666666665532 00 12355566666666655555
Q ss_pred HHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 637 YDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 637 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
+..+++++. +.|.++.++..+|.+|..+|+++.|++.|.+++.++|++
T Consensus 475 I~~~q~aL~------------------------------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 475 IDYYQKALL------------------------------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHH------------------------------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 555555544 444555555556666666666666666666666666666
No 45
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.88 E-value=2.3e-18 Score=196.09 Aligned_cols=443 Identities=10% Similarity=-0.053 Sum_probs=338.3
Q ss_pred HHHhhhHHhhcccHHHHHHHHHHHHhcCccc----cHhHHHHHHHHhcc---HHHHHHHHhhhccCCCchhHHHHHHHHh
Q 004243 259 LHQLGCVMFEREEYKDACYYFEAAADAGHIY----SLAGLARAKYKVGQ---QYSAYKLINSIISEHKPTGWMYQERSLY 331 (766)
Q Consensus 259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~l~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (766)
+..+...+.+.|++++|+..|+.+....+.. ....+...+...+. +...+..+.+.--..+...+..+...+.
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 4455666788899999999999987654321 12234444444443 3444444443333334566667777777
Q ss_pred ccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHhhhhHHHHHHH
Q 004243 332 NLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRD 407 (766)
Q Consensus 332 ~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~~A~~~ 407 (766)
..|+. |.+.|++..+ | +...|..+...|.+.|++++|+..|+++.+..+ +...+..+...+...|+...+.+.
T Consensus 170 k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred cCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 77774 8888887753 3 567788888999999999999999999876554 444455577777888899999888
Q ss_pred HHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHH
Q 004243 408 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 487 (766)
Q Consensus 408 ~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~ 487 (766)
+..+++...... ..++..+...|...|..++|...+ ++ ..+.+...|..+...|
T Consensus 247 ~~~~~~~g~~~d-----~~~~n~Li~~y~k~g~~~~A~~vf------------------~~---m~~~~~vt~n~li~~y 300 (697)
T PLN03081 247 HCCVLKTGVVGD-----TFVSCALIDMYSKCGDIEDARCVF------------------DG---MPEKTTVAWNSMLAGY 300 (697)
T ss_pred HHHHHHhCCCcc-----ceeHHHHHHHHHHCCCHHHHHHHH------------------Hh---CCCCChhHHHHHHHHH
Confidence 887776432211 125666777888888888885333 22 2345778899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc-cch-HHHHHHHHHHHhcCCCCCCh
Q 004243 488 LRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIE-RTF-EAFFLKAYILADTNLDPESS 564 (766)
Q Consensus 488 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~-~~~~~~~~~l~~~~~~~~~~ 564 (766)
.+.|++++|++.|++..+.. .-+..++..+..++.+.|++++|.+.+..+++.. +.+ ..+..+...+...|
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G------ 374 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG------ 374 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC------
Confidence 99999999999999887643 2245688889999999999999999999998875 233 77788888888887
Q ss_pred HHHHHHHHHHHhchhhcccc-chhHHhhHHHHHHhCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHhccHHHHHHHH
Q 004243 565 TYVIQLLEEALRCPSDGLRK-GQALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDEM 640 (766)
Q Consensus 565 ~~~~~~~~~A~~~~~~~l~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~la~~~~~~g~~~~A~~~~ 640 (766)
++++|.+.|++..++ ...|+.+...|...|+.++|++.|++..+.+ +..++..+..++...|..++|.+.|
T Consensus 375 -----~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 375 -----RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred -----CHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999998876 4889999999999999999999999988763 3457888899999999999999999
Q ss_pred HHHHHhc---cCC---HHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 641 TKLLEKA---QYS---ASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 641 ~~~l~~~---p~~---~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
+.+.+.. |+. ......++..|+.++|.+.+++. ...| +...|..+...+...|+++.|...+++.+++.|++
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 9998643 331 11233445789999999998864 2334 35678899999999999999999999999999987
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 715 -QMLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 715 -~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
..+..++.+|...|++++|.+.++...+.
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 45558899999999999999999987654
No 46
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-18 Score=181.02 Aligned_cols=409 Identities=14% Similarity=0.046 Sum_probs=294.6
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccC
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (766)
.+..|-.+.......|+|+.+.+.|++++...-. ..+.|...+..+...|
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~------------------------------~~e~w~~~als~saag 371 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG------------------------------EHERWYQLALSYSAAG 371 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh------------------------------hHHHHHHHHHHHHHhc
Confidence 4455666777777888888888888887643111 1233444555555555
Q ss_pred c--HHHHHHHHHHhcC--CCCchHHHHHHH-HHHHcCCHHHHHHHHHHHHccCC------CHHHHHHHHHHHHhh-----
Q 004243 335 R--EKIVDLNYASELD--PTLSFPYKYRAV-AKMEEGQIRAAISEIDRIIVFKL------SVDCLELRAWLFIAA----- 398 (766)
Q Consensus 335 ~--~A~~~~~~al~~~--p~~~~~~~~~a~-~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~a~~~~~~----- 398 (766)
. .|+...++..... |+++..+...+. |....+..++++.+..+++..-. .+..+..+|.+|-.+
T Consensus 372 ~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 372 SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence 5 3888888888887 877777666654 55668999999999999987322 233344466666332
Q ss_pred ------hhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHc
Q 004243 399 ------DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN 472 (766)
Q Consensus 399 ------g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~ 472 (766)
....++++.++++++.+|+|+. +.+.++.-+..+++.+.|.. ...++++.
T Consensus 452 ~~seR~~~h~kslqale~av~~d~~dp~------~if~lalq~A~~R~l~sAl~------------------~~~eaL~l 507 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQFDPTDPL------VIFYLALQYAEQRQLTSALD------------------YAREALAL 507 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCch------HHHHHHHHHHHHHhHHHHHH------------------HHHHHHHh
Confidence 3456778888888888888883 77778877777777777743 33777777
Q ss_pred -CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHH
Q 004243 473 -DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK 550 (766)
Q Consensus 473 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~ 550 (766)
..+++.+|..++.++...+++.+|+...+.++...|+|.........+-...|+.++|+......+.+-... .+-..+
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~ 587 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL 587 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 445677888888888888888888888888888888877777777777777888888888887777643221 000000
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHH----------------c-
Q 004243 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINAL----------------D- 613 (766)
Q Consensus 551 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----------------~- 613 (766)
+. +......+......++..+|...++++. .
T Consensus 588 ~~--------------------------------g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 588 DE--------------------------------GKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hh--------------------------------hhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 00 0000000111111111111211111111 1
Q ss_pred ---c-CC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCC
Q 004243 614 ---I-KH-------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDP 678 (766)
Q Consensus 614 ---~-~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p 678 (766)
. ++ ...|...+..+...++.++|..++.++-.+.|.....|+.+| ..|..++|.+.|..++.++|
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 1 11 146788899999999999999999999999999999999998 45889999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCHHHHHH--HHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChh
Q 004243 679 LRTYPYRYRAAVLMDDQKEVEAVE--ELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHME 749 (766)
Q Consensus 679 ~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 749 (766)
+++.+...+|.++.+.|+..-|.. .+..+++++|.+ ..|+.+|.++.+.|+.++|.+.|..++++++.+|-
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999988888 999999999999 67789999999999999999999999999988763
No 47
>PLN03077 Protein ECB2; Provisional
Probab=99.87 E-value=1.3e-17 Score=194.78 Aligned_cols=445 Identities=9% Similarity=-0.076 Sum_probs=345.2
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhcC--ccccHh-HHHHHHHHhcc---HHHHHHHHhhhccCCCchhHHHHHHH
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLA-GLARAKYKVGQ---QYSAYKLINSIISEHKPTGWMYQERS 329 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~-~l~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (766)
...|..+-..|.+.|++++|+..|+++...+ |+.... .+.......+. +.+.+..+.+.--..+...+..+...
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 3467778889999999999999999998873 433222 34444444444 44555555444334456677778888
Q ss_pred HhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHhhhhHHHHH
Q 004243 330 LYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--KLSVDCLELRAWLFIAADDYESAL 405 (766)
Q Consensus 330 ~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~~g~~~~A~ 405 (766)
+...|+. |.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .|+...+..+-..+.+.|++++|.
T Consensus 333 y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409 (857)
T ss_pred HHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHH
Confidence 8888884 999998864 346778999999999999999999999987554 466666666677889999999999
Q ss_pred HHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHH
Q 004243 406 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 485 (766)
Q Consensus 406 ~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~ 485 (766)
+.+..+.+....... .++..+...|...|++++|...+ ++. ...+...|..+..
T Consensus 410 ~l~~~~~~~g~~~~~-----~~~n~Li~~y~k~g~~~~A~~vf------------------~~m---~~~d~vs~~~mi~ 463 (857)
T PLN03077 410 KLHELAERKGLISYV-----VVANALIEMYSKCKCIDKALEVF------------------HNI---PEKDVISWTSIIA 463 (857)
T ss_pred HHHHHHHHhCCCcch-----HHHHHHHHHHHHcCCHHHHHHHH------------------HhC---CCCCeeeHHHHHH
Confidence 999999886543321 36677888888889999886333 332 2345678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch--HHHHHHHHHHHhcCCCCCC
Q 004243 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPES 563 (766)
Q Consensus 486 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~l~~~~~~~~~ 563 (766)
.|...|++++|+..|++.....+.+...+..+-.++...|+.+.+.+.+..+++..-.. ..+..+...+...|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G----- 538 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG----- 538 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC-----
Confidence 99999999999999999886555556677777788899999999999999988765332 44555666677776
Q ss_pred hHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHhccHHHHHHHH
Q 004243 564 STYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDEM 640 (766)
Q Consensus 564 ~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~la~~~~~~g~~~~A~~~~ 640 (766)
++++|...|+........|+.+...|...|+.++|++.|++..+.+ +..++..+-..+.+.|..++|.+.|
T Consensus 539 ------~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 539 ------RMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred ------CHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 8999999998883335889999999999999999999999988762 3357777888899999999999999
Q ss_pred HHHHHhccCC--HHHHH----HHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 641 TKLLEKAQYS--ASAFE----KRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 641 ~~~l~~~p~~--~~~~~----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
+++.+..+-. ...|. .++..|+.++|.+.+++. ...|+ +.+|..+-..+...|+.+.|....+++++++|++
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 9998543322 22333 334779999999999985 35564 6778777778888999999999999999999999
Q ss_pred HHHH-HHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 715 QMLH-LRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 715 ~~~~-~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
...+ .++.+|...|++++|.+..+..-+
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 6655 789999999999999999987754
No 48
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.85 E-value=4.3e-18 Score=180.21 Aligned_cols=505 Identities=12% Similarity=0.021 Sum_probs=320.4
Q ss_pred cchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh--HHHHHHHHhccHHHHHHHHhhhccC----CCch
Q 004243 248 CSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISE----HKPT 321 (766)
Q Consensus 248 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~l~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 321 (766)
.....+.-+.++..+|.+|..--+...|..+|++|.++++....+ ..+..+........++.-....-.. ....
T Consensus 484 alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~ 563 (1238)
T KOG1127|consen 484 ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKE 563 (1238)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHh
Confidence 333445567889999999999999999999999999999887665 5566666666655555433322221 1246
Q ss_pred hHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhh
Q 004243 322 GWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAA 398 (766)
Q Consensus 322 ~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~ 398 (766)
.|..+|-.+...++. |+..|+.++..+|++...|..+|.+|...|++..|++.|.++..++|....... .+.+....
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 788888888888886 999999999999999999999999999999999999999999999995554333 78888888
Q ss_pred hhHHHHHHHHHHHHhccCCccc-ccccchhhhHHhHHHHHHhhhchHhhHHHh---------------------------
Q 004243 399 DDYESALRDTLALLALESNYMM-FHGRVSGDHLVKLLNHHVRSWSPADCWIKL--------------------------- 450 (766)
Q Consensus 399 g~~~~A~~~~~~al~~~p~~~~-~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~--------------------------- 450 (766)
|+|.+|+..+..++........ ..+.++.+...+..+...|...+|..+++-
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 9999999888887764333221 222222332222222222222222211110
Q ss_pred ----------------------hh-----------------------------hhcc---------------cCcc-ccH
Q 004243 451 ----------------------YD-----------------------------RWSS---------------VDDI-GSL 463 (766)
Q Consensus 451 ----------------------~~-----------------------------~~~~---------------~~~~-~~l 463 (766)
.+ .|.+ ..+. .++
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 00 0000 0111 225
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccc
Q 004243 464 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (766)
Q Consensus 464 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (766)
.++.++++.+.++...|..+|.+ ...|++.-|...|-+.+...|...-.|.++|.++.+..+++.|...|.++..++|.
T Consensus 804 ~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 804 RCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch
Confidence 56666666666677777777766 44567777777777777777777778888888888888999999999999999999
Q ss_pred h-HHHHHHHHHHHhcCCCC----------------CChH------------HHHHHHHHHHhchhhccc-----------
Q 004243 544 F-EAFFLKAYILADTNLDP----------------ESST------------YVIQLLEEALRCPSDGLR----------- 583 (766)
Q Consensus 544 ~-~~~~~~~~~l~~~~~~~----------------~~~~------------~~~~~~~~A~~~~~~~l~----------- 583 (766)
+ ..|...+......|... +... ...|+.++-+...+++..
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 9 88877766555444100 0000 001223333333333211
Q ss_pred ---cchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--------CChHHHHHHHHHHHHhccHHHHHHHHHHHH-HhccCCH
Q 004243 584 ---KGQALNNLGSIYVECGKLDQAENCYINALDI--------KHTRAHQGLARVYYLKNELKAAYDEMTKLL-EKAQYSA 651 (766)
Q Consensus 584 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~ 651 (766)
...++...|.....++.+.+|.+.+.+.+.+ ..+.+--..|+++...|+++.|...+...- +.+.+
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEd-- 1040 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDED-- 1040 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHH--
Confidence 1467778888888888888888888877665 122244556666666666665543322211 00000
Q ss_pred HHHHHHh--hhcCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh------------
Q 004243 652 SAFEKRS--EYSDREMAKNDLNMATQLDPLRT---YPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL------------ 714 (766)
Q Consensus 652 ~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------ 714 (766)
..-..++ -.++++++.+.|++++.+..... ......+.+....+..+.|...+-+++...|..
T Consensus 1041 i~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~i 1120 (1238)
T KOG1127|consen 1041 IRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYI 1120 (1238)
T ss_pred HhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 0001111 24556666666666665544332 233344444444555555555555554433221
Q ss_pred --------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHH
Q 004243 715 --------------------------QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYN 755 (766)
Q Consensus 715 --------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 755 (766)
+.-+..-.++..+|+-..-.+..++++..+|+++..|.+|.
T Consensus 1121 ld~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1121 LDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred HhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 11123456777788888889999999999999999999998
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=3.7e-18 Score=180.07 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=91.9
Q ss_pred HHhhHHHHHHhCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHH
Q 004243 588 LNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDRE 664 (766)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 664 (766)
...++.+.+..++..+++..+..--.. +.++.+..++.++...|++.+|+.++..+....+.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~--------------- 446 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY--------------- 446 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc---------------
Confidence 555666666667777777666543332 45678888888988888888888888877755332
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 665 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 665 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
++..+|+.+|.+|..+|.+++|+++|++++...|++ .+-..++.++.++|+.++|.+.++....-
T Consensus 447 --------------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 447 --------------QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred --------------cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 235677777888888888888888888888888877 44447788888888888888777776633
Q ss_pred C
Q 004243 744 D 744 (766)
Q Consensus 744 ~ 744 (766)
|
T Consensus 513 D 513 (895)
T KOG2076|consen 513 D 513 (895)
T ss_pred C
Confidence 3
No 50
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.84 E-value=1.7e-18 Score=183.18 Aligned_cols=386 Identities=13% Similarity=0.047 Sum_probs=297.6
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALE 415 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 415 (766)
|...|-++++++|+.+.+|..+|..|...-+...|..+|.++.++++ +...+...+..|....++++|....-.+-+..
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999 44555668999999999999999865555555
Q ss_pred CCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHH
Q 004243 416 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 495 (766)
Q Consensus 416 p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 495 (766)
|.... ...+..+|..+...++...|.+ .++.+++.+|.+...|..+|.+|...|++..
T Consensus 557 ~a~~~----k~nW~~rG~yyLea~n~h~aV~------------------~fQsALR~dPkD~n~W~gLGeAY~~sGry~~ 614 (1238)
T KOG1127|consen 557 PAFAC----KENWVQRGPYYLEAHNLHGAVC------------------EFQSALRTDPKDYNLWLGLGEAYPESGRYSH 614 (1238)
T ss_pred hHHHH----HhhhhhccccccCccchhhHHH------------------HHHHHhcCCchhHHHHHHHHHHHHhcCceeh
Confidence 54432 2345557777777777777654 4599999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCC---CCChHHHHHHH
Q 004243 496 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD---PESSTYVIQLL 571 (766)
Q Consensus 496 A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~---~~~~~~~~~~~ 571 (766)
|++.|.++..++|.+....+..+.+....|+|.+|+..+...+...... .....++..+.+.... .+-......-+
T Consensus 615 AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 615 ALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred HHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999999999999999999999999999999999988766544 4444444443322100 01111122334
Q ss_pred HHHHhchhhcccc-----chhHHhhHHH-------------------HHH----hCCH------HHHHHHHHHHHcc-CC
Q 004243 572 EEALRCPSDGLRK-----GQALNNLGSI-------------------YVE----CGKL------DQAENCYINALDI-KH 616 (766)
Q Consensus 572 ~~A~~~~~~~l~~-----~~~~~~lg~~-------------------~~~----~g~~------~~A~~~~~~al~~-~~ 616 (766)
+++++.+.-++.. ...|..+|.+ +.. .+.. --|.+++-..++. .+
T Consensus 695 eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~ 774 (1238)
T KOG1127|consen 695 EKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH 774 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc
Confidence 4444444333220 1112222211 111 1111 1244555555555 46
Q ss_pred hHHHHHHHHHHHH--------hccHHHHHHHHHHHHHhccCCHHHHHHHh---hhcCHHHHHHHHHHHHhcCCCCchhHH
Q 004243 617 TRAHQGLARVYYL--------KNELKAAYDEMTKLLEKAQYSASAFEKRS---EYSDREMAKNDLNMATQLDPLRTYPYR 685 (766)
Q Consensus 617 ~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~ 685 (766)
+..|+++|.-|+. +.+...|+.++.+++++..++...|..+| ..|++.-|..+|-+.+...|.....|.
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhhee
Confidence 7889999998877 23345899999999999999999999999 447889999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 686 YRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 686 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (766)
++|.++.+..+++.|...|.++..++|.+ ..|...+.+....|+.-++...|....++.
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 99999999999999999999999999999 566688999999999999999998844443
No 51
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=3.6e-17 Score=186.42 Aligned_cols=424 Identities=12% Similarity=0.032 Sum_probs=317.3
Q ss_pred HHHHHHHHhcc---HHHHHHHHhhhcc-CCCchhHHHHHHHHhccCcH--HHHHHHHHHhc--CCCCchHHHHHHHHHHH
Q 004243 293 GLARAKYKVGQ---QYSAYKLINSIIS-EHKPTGWMYQERSLYNLGRE--KIVDLNYASEL--DPTLSFPYKYRAVAKME 364 (766)
Q Consensus 293 ~l~~~~~~~~~---a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--A~~~~~~al~~--~p~~~~~~~~~a~~~~~ 364 (766)
.+...+...+. +...+..+....+ ..+...+..+...+...++. |...+....+. .| +...+..+...|.+
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k 170 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVK 170 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhc
Confidence 33344444444 4445554443221 12334555555555555553 77777777653 45 47788899999999
Q ss_pred cCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchH
Q 004243 365 EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPA 444 (766)
Q Consensus 365 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A 444 (766)
.|++++|...|++.. .|+...|..+...|.+.|++++|+..|+++.+..+.... .++..+-......+....+
T Consensus 171 ~g~~~~A~~lf~~m~--~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~-----~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 171 CGMLIDARRLFDEMP--ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP-----RTFVVMLRASAGLGSARAG 243 (697)
T ss_pred CCCHHHHHHHHhcCC--CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh-----hhHHHHHHHHhcCCcHHHH
Confidence 999999999999986 466667777999999999999999999999875432221 1223333333334444444
Q ss_pred hhHHHhhhhhcccCccccHHHHHHHHHcC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Q 004243 445 DCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 523 (766)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~l~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~ 523 (766)
..+. ..+++.. ..+..++..+...|.+.|++++|.+.|+... +.+..+|..+...|.+
T Consensus 244 ~~l~------------------~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~ 302 (697)
T PLN03081 244 QQLH------------------CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYAL 302 (697)
T ss_pred HHHH------------------HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHh
Confidence 3221 2223222 2356678889999999999999999998763 4567899999999999
Q ss_pred CCCHHHHHHHHHHHHcc--ccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc----c-chhHHhhHHHHH
Q 004243 524 TGHREEALSRAEKSISI--ERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----K-GQALNNLGSIYV 596 (766)
Q Consensus 524 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----~-~~~~~~lg~~~~ 596 (766)
.|++++|++.|++..+. .|+...+..+...+...+ .+++|.+.+...++ + ..++..+...|.
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g-----------~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA-----------LLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc-----------chHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 99999999999998764 466677888888888777 88888888877755 2 378899999999
Q ss_pred HhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--cCCHHHH---HHHhhhcCHHHHHHHHH
Q 004243 597 ECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA--QYSASAF---EKRSEYSDREMAKNDLN 671 (766)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~---~~~~~~~~~~~A~~~~~ 671 (766)
+.|++++|...|++..+ .+..+|..+...|.+.|+.++|++.|+++.+.. |+..... ......|..++|...|+
T Consensus 372 k~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 372 KWGRMEDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred HCCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999998765 355689999999999999999999999998653 5443322 22337799999999999
Q ss_pred HHHhcCCC--CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChh
Q 004243 672 MATQLDPL--RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHME 749 (766)
Q Consensus 672 ~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 749 (766)
...+..+- +...|..+...|.+.|++++|.+.+++. ...|+...|..+...+...|+.+.|...+++.+++.|++..
T Consensus 451 ~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred HHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 98764332 3567888999999999999999999875 46778788888888888999999999999999999999877
Q ss_pred HHHHHHHHH
Q 004243 750 TLDLYNRAR 758 (766)
Q Consensus 750 ~~~~l~~~~ 758 (766)
.+..+..+.
T Consensus 530 ~y~~L~~~y 538 (697)
T PLN03081 530 NYVVLLNLY 538 (697)
T ss_pred chHHHHHHH
Confidence 766665543
No 52
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.84 E-value=3.9e-21 Score=164.35 Aligned_cols=146 Identities=22% Similarity=0.284 Sum_probs=125.7
Q ss_pred cccCCCCCCCceEEEEc---CeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 46 FVCLSLEEDDSVTFCVR---DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 46 ~~~~~~~~~~dv~~~~~---~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
.+.+..+.||||+|.++ ++.+||||.|||+||++++- .++-.| ...+..+ +|+++++|...++||||++++.
T Consensus 58 adL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkf--aN~~de-kse~~~~--dDad~Ea~~t~iRWIYTDEidf 132 (280)
T KOG4591|consen 58 ADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKF--ANGGDE-KSEELDL--DDADFEAFHTAIRWIYTDEIDF 132 (280)
T ss_pred HHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhh--ccCCCc-chhhhcc--cccCHHHHHHhheeeecccccc
Confidence 35678899999999997 57899999999999998763 333333 2334556 8999999999999999999985
Q ss_pred -CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccccc
Q 004243 123 -FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVM 198 (766)
Q Consensus 123 -~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~ 198 (766)
.+.+.+.++..+|++|+++.|+..|++-+...++ ++||+.++++|+..++.+|...|-..|..+++++ ..+.|.
T Consensus 133 k~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-~~a~Fa 207 (280)
T KOG4591|consen 133 KEDDEFLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL-GKADFA 207 (280)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ChHHHH
Confidence 5567788999999999999999999999999999 9999999999999999999999999999998876 334454
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=6.6e-18 Score=178.85 Aligned_cols=294 Identities=15% Similarity=0.037 Sum_probs=229.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHH
Q 004243 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 434 (766)
Q Consensus 356 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~ 434 (766)
...|......|+++.|.+.+.++.+..|++...+. .|.+....|+++.|..++.++.+..|++..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l-------------- 153 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI-------------- 153 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch--------------
Confidence 55677788888888888888888888886665555 788888888888888888888776666541
Q ss_pred HHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhH
Q 004243 435 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 514 (766)
Q Consensus 435 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 514 (766)
.+....+.++...|++++|...++...+..|+++.++
T Consensus 154 -------------------------------------------~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l 190 (409)
T TIGR00540 154 -------------------------------------------LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVL 190 (409)
T ss_pred -------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 1223347788889999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHH
Q 004243 515 VYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGS 593 (766)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~ 593 (766)
..++.++...|++++|.+.+.+..+..+.. ..+..+ ......
T Consensus 191 ~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l-------------------------------------~~~a~~ 233 (409)
T TIGR00540 191 KLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL-------------------------------------EQKAEI 233 (409)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH-------------------------------------HHHHHH
Confidence 999999999999999999999888764332 100000 001111
Q ss_pred HHHHhCCHHHHHHHHHHHHcc------CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHH----HHHHHh--hhc
Q 004243 594 IYVECGKLDQAENCYINALDI------KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS----AFEKRS--EYS 661 (766)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~--~~~ 661 (766)
.+...+..+++.+.+.++... +.+..+..+|..+...|++++|.+.++++++..|++.. .+...+ ..+
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC
Confidence 112233333344455444443 25678899999999999999999999999999998875 333333 346
Q ss_pred CHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHhCCCHHHHHHHHH--HHHhcCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004243 662 DREMAKNDLNMATQLDPLRT--YPYRYRAAVLMDDQKEVEAVEELS--KAIAFKPDLQMLHLRAAFYESIGDLTSAIRDS 737 (766)
Q Consensus 662 ~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~ 737 (766)
+.+.++..++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..|++..+..+|.++.+.|+.++|.++|
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78899999999999999999 889999999999999999999999 68888999988779999999999999999999
Q ss_pred HHHHcc
Q 004243 738 QAALCL 743 (766)
Q Consensus 738 ~~al~~ 743 (766)
++++..
T Consensus 394 ~~~l~~ 399 (409)
T TIGR00540 394 QDSLGL 399 (409)
T ss_pred HHHHHH
Confidence 998754
No 54
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.83 E-value=4.5e-20 Score=180.57 Aligned_cols=155 Identities=19% Similarity=0.260 Sum_probs=142.0
Q ss_pred ccccccCCCCCCCceEEEEcC-----eEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhc
Q 004243 43 VEKFVCLSLEEDDSVTFCVRD-----KEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRT 117 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~-----~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt 117 (766)
.+.....+++..+||+|+|++ ++|||||.|||..|++|.+||+|++.|+...+|.+ +||.|.+|..+|+|||+
T Consensus 103 er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~l--pdvepaaFl~~L~flYs 180 (521)
T KOG2075|consen 103 ERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRL--PDVEPAAFLAFLRFLYS 180 (521)
T ss_pred HhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeec--CCcChhHhHHHHHHHhc
Confidence 344556799999999999973 68999999999999999999999999998889999 99999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHH-HHHHhhChHHHHHHHHHHHHhhhhhhcCccc
Q 004243 118 SRVDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILI-DYGLEERATLLVASCLQVLLRELPSSLYNPK 196 (766)
Q Consensus 118 ~~~~~~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~-~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~ 196 (766)
+.+. +..++++.+|.+|++|.++.|.+.|.+||+..+. +.|.+..+ +.|.+++-++|...|++-|..+|......|.
T Consensus 181 dev~-~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~-~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EG 258 (521)
T KOG2075|consen 181 DEVK-LAADTVITTLYAAKKYLVPALERQCVKFLRKNLM-ADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEG 258 (521)
T ss_pred chhh-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccc
Confidence 9999 9999999999999999999999999999999998 66655555 4599999999999999999999999999999
Q ss_pred ccccc
Q 004243 197 VMKIF 201 (766)
Q Consensus 197 f~~l~ 201 (766)
|..+=
T Consensus 259 f~did 263 (521)
T KOG2075|consen 259 FCDID 263 (521)
T ss_pred eeehh
Confidence 98763
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.4e-19 Score=172.43 Aligned_cols=313 Identities=15% Similarity=0.145 Sum_probs=238.9
Q ss_pred hHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhh
Q 004243 322 GWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAA 398 (766)
Q Consensus 322 ~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~ 398 (766)
.....|+.+++...| |+..|..||+.+|+++..|.+++.+++..|++++|....++.++++|....... .+.++..+
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 344567777777776 999999999999999999999999999999999999999999999996666555 89999999
Q ss_pred hhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHc---CCC
Q 004243 399 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN---DPG 475 (766)
Q Consensus 399 g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~---~p~ 475 (766)
++..+|...++ +.. +. ... .. +..+++.+.. .|.
T Consensus 131 ~~~i~A~~~~~--------~~~------~~----~~a---na----------------------l~~~~~~~~s~s~~pa 167 (486)
T KOG0550|consen 131 SDLIEAEEKLK--------SKQ------AY----KAA---NA----------------------LPTLEKLAPSHSREPA 167 (486)
T ss_pred HHHHHHHHHhh--------hhh------hh----HHh---hh----------------------hhhhhcccccccCCch
Confidence 99999888877 110 00 000 00 1111222222 144
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 554 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l 554 (766)
...+....+.++...|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|++ .+-
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk------- 240 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK------- 240 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH-------
Confidence 556777889999999999999999999999999999999999999999999999999999999999997 100
Q ss_pred HhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHH
Q 004243 555 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELK 634 (766)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~ 634 (766)
.++... +.-..|..-|.-.++.|++.
T Consensus 241 --------------------------------------~~~~~~----------------k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 241 --------------------------------------SASMMP----------------KKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred --------------------------------------hHhhhH----------------HHHHHHHhhhhhHhhccchh
Confidence 000000 01134455566667777777
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 635 AAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 635 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
.|.+.|..++.++|++... ++..|.++|.+....|+..+|+...+.++.++|..
T Consensus 267 ~A~E~Yteal~idP~n~~~--------------------------naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKT--------------------------NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred HHHHHHHHhhcCCccccch--------------------------hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 7777777777777664332 35677888888888888888888888888888888
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhhhc
Q 004243 715 -QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQQ 765 (766)
Q Consensus 715 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 765 (766)
..+..+|.|+..++++++|+++|+++++...+ .+....+.+++..+++.|
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhh
Confidence 66667888888888888888888888888877 777888888888777654
No 56
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.83 E-value=1.6e-15 Score=174.35 Aligned_cols=443 Identities=11% Similarity=0.023 Sum_probs=323.1
Q ss_pred HHHHhhhHHhhcccHHHHHHHHHHHHhcCcc--ccHh--HHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhcc
Q 004243 258 ALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (766)
Q Consensus 258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~--~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (766)
.+..+-..+.+.|++++|+..|+++...+.. .... .+...+...+....++.... ..+..+...|..+-..+...
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~-~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK-LIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH-HcCCCCHHHHHHHHHHHHhC
Confidence 3444455667889999999999998876532 2211 23344555555555444332 33334556677777777777
Q ss_pred CcH--HHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHhhhhHHHHHHHH
Q 004243 334 GRE--KIVDLNYASELDP-TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--KLSVDCLELRAWLFIAADDYESALRDT 408 (766)
Q Consensus 334 ~~~--A~~~~~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~~g~~~~A~~~~ 408 (766)
++. |...|++..+... .+...|..+...|.+.|+.++|...|+++.+. .|+...+..+...|.+.|++++|+..|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 774 9999999887653 35678889999999999999999999999865 456666777999999999999999999
Q ss_pred HHHHh--ccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHH----cCCCChhHHHH
Q 004243 409 LALLA--LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI----NDPGKSFLRFR 482 (766)
Q Consensus 409 ~~al~--~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~----~~p~~~~~~~~ 482 (766)
+.+.. ..|+.. .+..+...+...|.+++|...+ .++.. ..| +...|..
T Consensus 531 ~~M~~~Gv~PD~v-------TYnsLI~a~~k~G~~deA~~lf------------------~eM~~~~~gi~P-D~vTyna 584 (1060)
T PLN03218 531 GIMRSKNVKPDRV-------VFNALISACGQSGAVDRAFDVL------------------AEMKAETHPIDP-DHITVGA 584 (1060)
T ss_pred HHHHHcCCCCCHH-------HHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhcCCCCC-cHHHHHH
Confidence 99876 445544 6666777777778888885333 45543 234 3567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcc--ccchHHHHHHHHHHHhcCC
Q 004243 483 QSLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFFLKAYILADTNL 559 (766)
Q Consensus 483 la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~l~~~~~ 559 (766)
+...|.+.|++++|.+.|+.+.+.+ +.++..|..+...|.+.|++++|...|++..+. .|+...|..+...+...+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G- 663 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG- 663 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-
Confidence 8889999999999999999988875 446778899999999999999999999998876 566677777778887777
Q ss_pred CCCChHHHHHHHHHHHhchhhccc----c-chhHHhhHHHHHHhCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHHhc
Q 004243 560 DPESSTYVIQLLEEALRCPSDGLR----K-GQALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKN 631 (766)
Q Consensus 560 ~~~~~~~~~~~~~~A~~~~~~~l~----~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~la~~~~~~g 631 (766)
++++|.+.+..+.+ | ...|..+...|.+.|++++|.+.|++..+. .+...|..+...|.+.|
T Consensus 664 ----------~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 664 ----------DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred ----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 88888888888754 2 378899999999999999999999988765 34568999999999999
Q ss_pred cHHHHHHHHHHHHHh--ccCCHHH---HHHHhhhcCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHH------------
Q 004243 632 ELKAAYDEMTKLLEK--AQYSASA---FEKRSEYSDREMAKNDLNMATQLD--PLRTYPYRYRAAVLM------------ 692 (766)
Q Consensus 632 ~~~~A~~~~~~~l~~--~p~~~~~---~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~------------ 692 (766)
++++|.+.|+++... .|+.... .......|+.++|...+.++.+.. |+. ..+..+-.++.
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~-~tynsLIglc~~~y~ka~~l~~~ 812 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL-VMCRCITGLCLRRFEKACALGEP 812 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999998754 3443322 222336789999999999988643 332 22222211111
Q ss_pred -----------hCCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004243 693 -----------DDQKEVEAVEELSKAIAF--KPDLQMLHLRAAFYESIGDLTSAIRDSQA 739 (766)
Q Consensus 693 -----------~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~ 739 (766)
..+..++|+..|+++++. .|+...+..+-.++...+....+...++.
T Consensus 813 v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~ 872 (1060)
T PLN03218 813 VVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIEN 872 (1060)
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 112346788888888775 57776666433556667777777777654
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=1e-16 Score=168.71 Aligned_cols=299 Identities=14% Similarity=0.019 Sum_probs=227.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhH
Q 004243 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 433 (766)
Q Consensus 355 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~ 433 (766)
.+..|......|++++|.+...+..+..+.+..++. .+......|+++.|..++.++.+.+|++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~------------- 153 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQL------------- 153 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH-------------
Confidence 345677777788888888888877665555555555 466668888888888888888877776652
Q ss_pred HHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhh
Q 004243 434 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 513 (766)
Q Consensus 434 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 513 (766)
......+.++...|++++|+..++++.+.+|+++.+
T Consensus 154 --------------------------------------------~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~a 189 (398)
T PRK10747 154 --------------------------------------------PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEV 189 (398)
T ss_pred --------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 112234677888899999999999999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhH
Q 004243 514 LVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLG 592 (766)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg 592 (766)
+..++.+|...|++++|++.+.+..+..+.. +....+- ..++..+.
T Consensus 190 l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~---------------------------------~~a~~~l~ 236 (398)
T PRK10747 190 LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE---------------------------------QQAWIGLM 236 (398)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH---------------------------------HHHHHHHH
Confidence 9999999999999999998888887755443 1000000 00111111
Q ss_pred HHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh--hhcCHHHHHH
Q 004243 593 SIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS--EYSDREMAKN 668 (766)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~--~~~~~~~A~~ 668 (766)
.......+-+...+.++..... +++.+...++..+...|+.++|...++++++. |.++......+ ..++.++++.
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHHH
Confidence 1111222333333333333222 46788999999999999999999999999984 55555444444 3488999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 669 DLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 669 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (766)
..++.++..|+++..+..+|.++...|++++|.++|+++++..|++..+..++.++.+.|+.++|..+|++++.+-
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999998899999999999999999999998764
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.82 E-value=9.3e-20 Score=183.58 Aligned_cols=258 Identities=21% Similarity=0.205 Sum_probs=113.9
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-c-CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHH
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN-H-SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF 548 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 548 (766)
..|. ...+.+|.++...|++++|++.+.+.+. . .|+++..|..+|.+....|++++|+..|++++..++.. ..+.
T Consensus 5 ~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~ 82 (280)
T PF13429_consen 5 FGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3455 2334679999999999999999976554 4 48889999999999999999999999999999988877 4444
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc---chhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CChHHHH
Q 004243 549 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK---GQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQ 621 (766)
Q Consensus 549 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~~ 621 (766)
.+... ...+ ++++|+..+.++.+. +..+.....++...++++++...++++... .++..|.
T Consensus 83 ~l~~l-~~~~-----------~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 150 (280)
T PF13429_consen 83 RLIQL-LQDG-----------DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWL 150 (280)
T ss_dssp -----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHH
T ss_pred ccccc-cccc-----------cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 44444 3333 888888888877652 466677788899999999999999997755 3557899
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 622 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 622 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
.+|.++...|+.++|+..++++++.+|++..+...++ ..|+.+++...+....+..|.++..+..+|.++...|++
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999887777 568889989999888888899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 698 VEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 698 ~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
++|+.+|++++..+|+++.+. .+|.++...|+.++|...++++++.
T Consensus 231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 231 EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999997666 8899999999999999999998753
No 59
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.82 E-value=5.5e-15 Score=169.95 Aligned_cols=464 Identities=9% Similarity=-0.052 Sum_probs=332.9
Q ss_pred hhHHHHHHHHhhcchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccc-cHhHHHHHHHHhcc---HHHHHHHH
Q 004243 236 NTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY-SLAGLARAKYKVGQ---QYSAYKLI 311 (766)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~l~~~~~~~~~---a~~~~~~~ 311 (766)
..+..+++.+.+.....+. ...+..+-..+.+.|..++|...|+.... |+. ....+...+...+. +...++++
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~-~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M 463 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMD-KIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDIDGALRVLRLV 463 (1060)
T ss_pred HHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 3444555555443222221 22233345567788999999999987764 432 22355556666666 55555555
Q ss_pred hhhccCCCchhHHHHHHHHhccCcH--HHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCHH
Q 004243 312 NSIISEHKPTGWMYQERSLYNLGRE--KIVDLNYASELDP-TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--KLSVD 386 (766)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~~~~~ 386 (766)
.+.-...+...|..+...+...|+. |...|++..+... .+...|..+...|.+.|++++|+..|+++.+. .|+..
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 5444445566777777888888874 9999999987653 36788999999999999999999999998654 56666
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh----ccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCcccc
Q 004243 387 CLELRAWLFIAADDYESALRDTLALLA----LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGS 462 (766)
Q Consensus 387 ~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 462 (766)
.+..+...+.+.|++++|.+.|.++.. +.|+.. .+..+-..+...|++++|...
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-------TynaLI~ay~k~G~ldeA~el--------------- 601 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-------TVGALMKACANAGQVDRAKEV--------------- 601 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-------HHHHHHHHHHHCCCHHHHHHH---------------
Confidence 677799999999999999999999875 355544 556666777788888888533
Q ss_pred HHHHHHHHHcC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 463 LAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 463 l~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
|+.+.+.+ +.+...|..+...|.+.|++++|+..|+.+.+. .|+ ...+..+...+.+.|++++|.+.++++.+
T Consensus 602 ---f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 602 ---YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred ---HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46666654 456788999999999999999999999988775 344 56788889999999999999999999987
Q ss_pred cc--cchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcc----cc-chhHHhhHHHHHHhCCHHHHHHHHHHHH
Q 004243 540 IE--RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL----RK-GQALNNLGSIYVECGKLDQAENCYINAL 612 (766)
Q Consensus 540 ~~--p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l----~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al 612 (766)
.. |+...+..+...+...+ ++++|.+.|+... .| ...|+.+...|.+.|++++|.+.|++..
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G-----------~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAK-----------NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 64 44478888888888887 8899999998774 34 3789999999999999999999999987
Q ss_pred ccC---ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccC-CHHHHHHH-h----------h----------------hc
Q 004243 613 DIK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY-SASAFEKR-S----------E----------------YS 661 (766)
Q Consensus 613 ~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~-~----------~----------------~~ 661 (766)
..+ +...|..+...+.+.|++++|.+.+.++.+.... +...+..+ + . .+
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence 763 4457888889999999999999999999875422 22111111 1 0 01
Q ss_pred CHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHcCCH-HHHHH
Q 004243 662 DREMAKNDLNMATQL--DPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL---QMLHLRAAFYESIGDL-TSAIR 735 (766)
Q Consensus 662 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~la~~~~~~g~~-~~A~~ 735 (766)
..++|+..|++.++. .|+. ..+..+-.++...+....+...++.. ...|.. ..+..+-.. .|++ ++|..
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~-~T~~~vL~cl~~~~~~~~~~~m~~~m-~~~~~~~~~~~y~~Li~g---~~~~~~~A~~ 901 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTM-EVLSQVLGCLQLPHDATLRNRLIENL-GISADSQKQSNLSTLVDG---FGEYDPRAFS 901 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccccHHHHHHHHHHh-ccCCCCcchhhhHHHHHh---hccChHHHHH
Confidence 236788888888854 3543 33443335667778888888877654 333433 333333222 2443 68999
Q ss_pred HHHHHHccC
Q 004243 736 DSQAALCLD 744 (766)
Q Consensus 736 ~~~~al~~~ 744 (766)
.++.+.+..
T Consensus 902 l~~em~~~G 910 (1060)
T PLN03218 902 LLEEAASLG 910 (1060)
T ss_pred HHHHHHHcC
Confidence 999998763
No 60
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.79 E-value=9.3e-20 Score=155.31 Aligned_cols=104 Identities=29% Similarity=0.365 Sum_probs=93.6
Q ss_pred cCCCCCCCceEEEEc-CeEEEeehHHHhcCCHHHHHHhcCC-CccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCC-
Q 004243 48 CLSLEEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGG-FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC- 124 (766)
Q Consensus 48 ~~~~~~~~dv~~~~~-~~~~~~h~~~l~~~s~~f~~~~~~~-~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~- 124 (766)
.++++.++||+|.|+ |++|+|||.||+++|+||+.||.++ +.+....+|.+ +++++++|+.+++|+|+|.+. ++
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~Y~~~~~-~~~ 80 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISL--PDVSPEAFEAFLEYMYTGEIE-INS 80 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEE--TTSCHHHHHHHHHHHHHSEEE-EE-
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccc--ccccccccccccccccCCccc-CCH
Confidence 456678999999999 8999999999999999999999998 67777778999 999999999999999999998 87
Q ss_pred HHHHHHHHHHhhhhChHhHHHHHHHHHHhh
Q 004243 125 PGIVLELLSFANRFCCEEMKSACDAHLASL 154 (766)
Q Consensus 125 ~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~ 154 (766)
.+++.+++.+|++|+++.|+..|+++|.+.
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 899999999999999999999999999864
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.9e-18 Score=160.93 Aligned_cols=229 Identities=14% Similarity=0.061 Sum_probs=142.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHH
Q 004243 391 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 470 (766)
Q Consensus 391 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al 470 (766)
+|.||+.+|-+.+|.+.++..++..|.-. .+.++..+|..+.+...| +..+.+.+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~d-------TfllLskvY~ridQP~~A------------------L~~~~~gl 283 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPD-------TFLLLSKVYQRIDQPERA------------------LLVIGEGL 283 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchh-------HHHHHHHHHHHhccHHHH------------------HHHHhhhh
Confidence 88888888888888888888777655433 555666666666666555 33446666
Q ss_pred HcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHH
Q 004243 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLK 550 (766)
Q Consensus 471 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 550 (766)
+.-|.+...+...+.++..++++++|.+.|+.+++.+|.+.++.-.+|.-|+..++++-|+.+|++.+++.-.+
T Consensus 284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s------ 357 (478)
T KOG1129|consen 284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS------ 357 (478)
T ss_pred hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC------
Confidence 66666666666666667667777777777777777766666666666666666666777777776666644332
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-----ChHHHHHHHH
Q 004243 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLAR 625 (766)
Q Consensus 551 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~la~ 625 (766)
++.+.++|.+.+..++++-++..|++++..- ..++|+++|.
T Consensus 358 ----------------------------------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~ 403 (478)
T KOG1129|consen 358 ----------------------------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGF 403 (478)
T ss_pred ----------------------------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccce
Confidence 4556666666666666666666666666551 2356666666
Q ss_pred HHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHH
Q 004243 626 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELS 705 (766)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 705 (766)
+....|++.-|.++|+-++.. +|++.+++.++|.+-.+.|+.++|..+++
T Consensus 404 vaV~iGD~nlA~rcfrlaL~~------------------------------d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 404 VAVTIGDFNLAKRCFRLALTS------------------------------DAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred eEEeccchHHHHHHHHHHhcc------------------------------CcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 666666665555555544444 44444444555555555555555555555
Q ss_pred HHHhcCCCh
Q 004243 706 KAIAFKPDL 714 (766)
Q Consensus 706 ~al~~~p~~ 714 (766)
.+-...|+.
T Consensus 454 ~A~s~~P~m 462 (478)
T KOG1129|consen 454 AAKSVMPDM 462 (478)
T ss_pred HhhhhCccc
Confidence 555555544
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=1.7e-17 Score=167.02 Aligned_cols=143 Identities=18% Similarity=0.192 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCC----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004243 463 LAVINQMLINDP----GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 538 (766)
Q Consensus 463 l~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (766)
+..+.+++...| ..+..|+.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++
T Consensus 46 i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 46 LARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445566775333 2356688888888888888888888888888888888888888888888888888888888888
Q ss_pred ccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChH
Q 004243 539 SIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTR 618 (766)
Q Consensus 539 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (766)
+++|++ ..++.++|.++...|++++|++.|+++++.++.+
T Consensus 126 ~l~P~~----------------------------------------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 126 ELDPTY----------------------------------------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HhCCCC----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 888876 4456667777777777777777777777765433
Q ss_pred HHHHHH-HHHHHhccHHHHHHHHHHHHH
Q 004243 619 AHQGLA-RVYYLKNELKAAYDEMTKLLE 645 (766)
Q Consensus 619 ~~~~la-~~~~~~g~~~~A~~~~~~~l~ 645 (766)
.+..+. .+....+++++|+..+.+.+.
T Consensus 166 ~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 166 PYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 321111 122344556666666655443
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=5.2e-17 Score=145.11 Aligned_cols=207 Identities=19% Similarity=0.126 Sum_probs=182.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHh
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 556 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 556 (766)
..++..+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~------------ 102 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN------------ 102 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc------------
Confidence 35788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CChHHHHHHHHHHHHhcc
Q 004243 557 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLKNE 632 (766)
Q Consensus 557 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~la~~~~~~g~ 632 (766)
+++++|.|..++.+|++++|...|++|+.. .+.+++.|+|.|..+.|+
T Consensus 103 ----------------------------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 103 ----------------------------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred ----------------------------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 788999999999999999999999999997 467899999999999999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 004243 633 LKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP 712 (766)
Q Consensus 633 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 712 (766)
++.|.+.|+++++. +|+.+.+...++...+..|+|-.|..++++....-+
T Consensus 155 ~~~A~~~l~raL~~------------------------------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 155 FDQAEEYLKRALEL------------------------------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred chhHHHHHHHHHHh------------------------------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 98887777766655 556677777888899999999999999998877655
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHH
Q 004243 713 DL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDL 753 (766)
Q Consensus 713 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 753 (766)
-. ..+.+...+-...||-+.|-++=.+.-...|..++....
T Consensus 205 ~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 205 AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 44 666677788888999999999999999999998776443
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=4.1e-17 Score=164.26 Aligned_cols=228 Identities=17% Similarity=0.142 Sum_probs=180.1
Q ss_pred cCCHHHHHHHHHHHHhcCC---C-chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChH
Q 004243 490 LNCQKAAMRCLRLARNHSS---S-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESST 565 (766)
Q Consensus 490 ~g~~~~A~~~~~~a~~~~p---~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~ 565 (766)
.+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++++|++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~--------------------- 97 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM--------------------- 97 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------------
Confidence 3567889999999996433 3 36789999999999999999999999999999997
Q ss_pred HHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004243 566 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKL 643 (766)
Q Consensus 566 ~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 643 (766)
+.+|+.+|.++...|++++|+..|+++++++ +..++.++|.++...|++++|++.++++
T Consensus 98 -------------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 98 -------------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6778999999999999999999999999984 5679999999999999999999999999
Q ss_pred HHhccCCHH--HHHHHh-hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHH--HHHHHHHH----hcCCCh
Q 004243 644 LEKAQYSAS--AFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA--VEELSKAI----AFKPDL 714 (766)
Q Consensus 644 l~~~p~~~~--~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A--~~~~~~al----~~~p~~ 714 (766)
++.+|+++. .|..+. ..++.++|+..+.++....+.. .|. .+.+....|+..++ ++.+.+.+ ++.|+.
T Consensus 159 l~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (296)
T PRK11189 159 YQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERL 235 (296)
T ss_pred HHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHH
Confidence 999999874 333333 4578999999998877543322 222 35555666666443 33333332 334444
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CChhHHHHHHHHHHh
Q 004243 715 -QMLHLRAAFYESIGDLTSAIRDSQAALCLDP-NHMETLDLYNRARDQ 760 (766)
Q Consensus 715 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 760 (766)
..++.+|.++...|++++|+.+|+++++++| ++.+....+-++...
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 5677999999999999999999999999996 667765555444443
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=5.2e-17 Score=178.60 Aligned_cols=184 Identities=14% Similarity=-0.006 Sum_probs=122.5
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcC---------CHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhHHHHHH
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEG---------QIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALR 406 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g---------~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~ 406 (766)
|+..|+++++++|+++.++..+|.++...+ ++++|+..++++++++|+ +..+..+|.++...|++++|+.
T Consensus 280 A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~ 359 (553)
T PRK12370 280 ALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSL 359 (553)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 778888888888888877777777665432 366777777777777773 3334447777777777777777
Q ss_pred HHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHH
Q 004243 407 DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLL 486 (766)
Q Consensus 407 ~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~ 486 (766)
.|+++++++|+++. ++..+|.++...|++++|. ..++++++.+|.++..+..++.+
T Consensus 360 ~~~~Al~l~P~~~~------a~~~lg~~l~~~G~~~eAi------------------~~~~~Al~l~P~~~~~~~~~~~~ 415 (553)
T PRK12370 360 LFKQANLLSPISAD------IKYYYGWNLFMAGQLEEAL------------------QTINECLKLDPTRAAAGITKLWI 415 (553)
T ss_pred HHHHHHHhCCCCHH------HHHHHHHHHHHCCCHHHHH------------------HHHHHHHhcCCCChhhHHHHHHH
Confidence 77777777777763 5666666666666666663 33466677777666555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 487 LLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 487 ~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
+...|++++|+..+++++... |+++..+..+|.++...|++++|...++++....|..
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 666666777777776666553 5566666667777777777777777766665555543
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.3e-15 Score=146.57 Aligned_cols=309 Identities=13% Similarity=0.044 Sum_probs=235.5
Q ss_pred HHhcCCCCchHHHH-HHHHHHHcCCHHH--HHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccCCcc
Q 004243 344 ASELDPTLSFPYKY-RAVAKMEEGQIRA--AISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESALRDTLALLALESNYM 419 (766)
Q Consensus 344 al~~~p~~~~~~~~-~a~~~~~~g~~~~--A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 419 (766)
++..+|..+..|.. .+.+....++... +..++-.-...-|+...+.. +|.+++..|++.+|+..|+++..++|...
T Consensus 187 ~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i 266 (564)
T KOG1174|consen 187 AATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV 266 (564)
T ss_pred heecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh
Confidence 45566666654432 2334444444444 44444445555565555555 89999999999999999999999998887
Q ss_pred cccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004243 420 MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRC 499 (766)
Q Consensus 420 ~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 499 (766)
. +....+.+....|.++.-..+. ...+........-|+--+..++..++++.|+..
T Consensus 267 ~------~MD~Ya~LL~~eg~~e~~~~L~------------------~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 267 E------AMDLYAVLLGQEGGCEQDSALM------------------DYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred h------hHHHHHHHHHhccCHhhHHHHH------------------HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 4 6666677777777766654332 445555556667788888888888999999999
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchh
Q 004243 500 LRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 579 (766)
Q Consensus 500 ~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 579 (766)
-+++++.+|.+..++...|.++.+.|+.++|+-.|+.+..+.|..
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r----------------------------------- 367 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR----------------------------------- 367 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-----------------------------------
Confidence 999999999999999999999999999999999999999888776
Q ss_pred hccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHH-HHHH-HhccHHHHHHHHHHHHHhccCCHHHHH
Q 004243 580 DGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLA-RVYY-LKNELKAAYDEMTKLLEKAQYSASAFE 655 (766)
Q Consensus 580 ~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la-~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~ 655 (766)
-+.|..+-.+|+..|++.+|.-.-+.++.. ....++..+| .++. .-.--++|.+.+++.+.+.|.+..+..
T Consensus 368 -----L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 368 -----LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred -----HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 344666677778888888888877777776 4556666664 3333 233367899999999999999988888
Q ss_pred HHhh----hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHH
Q 004243 656 KRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQML 717 (766)
Q Consensus 656 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 717 (766)
.+++ -|.++.++..+++.+...|+ ...+..+|.++...+.+++|.+.|..|+.++|++...
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 7773 37889999999999988885 5788999999999999999999999999999999554
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=1e-16 Score=176.35 Aligned_cols=268 Identities=12% Similarity=-0.030 Sum_probs=165.2
Q ss_pred HHHHHHHHHh---hhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHH
Q 004243 388 LELRAWLFIA---ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 464 (766)
Q Consensus 388 ~~~~a~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~ 464 (766)
+++.|..+.. .+.+++|+..|+++++++|++.. ++..++.++...+...... ...+...++.
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~------a~~~La~~~~~~~~~g~~~---------~~~~~~~A~~ 325 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIA------PYCALAECYLSMAQMGIFD---------KQNAMIKAKE 325 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHHHHHHcCCcc---------cchHHHHHHH
Confidence 4446654433 46678889999999999988873 6666666665544321100 0001223466
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 465 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777765
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC---ChHHHH
Q 004243 545 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQ 621 (766)
Q Consensus 545 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~ 621 (766)
...+..++.++...|++++|+..+++++... .+.++.
T Consensus 406 ----------------------------------------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 406 ----------------------------------------AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred ----------------------------------------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHH
Confidence 2233344555666677777777777766542 345566
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHH
Q 004243 622 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV 701 (766)
Q Consensus 622 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 701 (766)
.+|.++...|++++|...+.++.... |....++..++..|...|+ +|.
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~--~a~ 493 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQE------------------------------ITGLIAVNLLYAEYCQNSE--RAL 493 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhcc------------------------------chhHHHHHHHHHHHhccHH--HHH
Confidence 67777777777766666666554443 4444455555656665553 555
Q ss_pred HHHHHHHhcCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 702 EELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 702 ~~~~~al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
..+++.++.....+ .......++.-.|+.+.|... +++.+.
T Consensus 494 ~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 494 PTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 55555444322111 111255556666666666655 555544
No 68
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.7e-17 Score=167.25 Aligned_cols=222 Identities=18% Similarity=0.162 Sum_probs=153.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCC
Q 004243 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNL 559 (766)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~ 559 (766)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.++...++-..|+..++++++++|++ ++...++..+...+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg- 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG- 367 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh-
Confidence 5778899999999999999999999999999999999999999999999999999999999999 77777777776665
Q ss_pred CCCChHHHHHHHHHHHhchhhccc--cchhHHhhHHHHH---------HhCCHHHHHHHHHHHHcc----CChHHHHHHH
Q 004243 560 DPESSTYVIQLLEEALRCPSDGLR--KGQALNNLGSIYV---------ECGKLDQAENCYINALDI----KHTRAHQGLA 624 (766)
Q Consensus 560 ~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~lg~~~~---------~~g~~~~A~~~~~~al~~----~~~~~~~~la 624 (766)
.-.+|+.++.+-+. |...+...+..-. ....+..-.+.|-.+... .++++...||
T Consensus 368 ----------~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 368 ----------LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred ----------hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 44555555555443 2222222211110 111122333344443333 2456777777
Q ss_pred HHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHH
Q 004243 625 RVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA 700 (766)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 700 (766)
.+|...|+|++|+++|+.++...|++...|+.+| +-.+.++|+..|++|+++.|....+++++|..++.+|.|++|
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 7777777777777777777777777777777666 234556777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCC
Q 004243 701 VEELSKAIAFKPD 713 (766)
Q Consensus 701 ~~~~~~al~~~p~ 713 (766)
+++|-.||.+.+.
T Consensus 518 ~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 518 VKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHhhhc
Confidence 7777666666443
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=2.3e-15 Score=156.59 Aligned_cols=413 Identities=16% Similarity=0.055 Sum_probs=275.6
Q ss_pred chhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCHHH-HHH-HHH
Q 004243 320 PTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--LSVDC-LEL-RAW 393 (766)
Q Consensus 320 ~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~-~~~-~a~ 393 (766)
+..|-.+.-.+..-|+. +.+.|++++...-.....|+..+.++...|....|+...+...... |+... +.. -..
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmaskl 402 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKL 402 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHH
Confidence 34444455555556664 8899999998888888999999999999999999999999999888 42233 333 455
Q ss_pred HHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCc--cccHHHHHHHHH
Q 004243 394 LFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDD--IGSLAVINQMLI 471 (766)
Q Consensus 394 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~al~ 471 (766)
+....|.+++++.+.++++...-.... .-...++..+|..|.....-..-. +..+. ..++..++++++
T Consensus 403 c~e~l~~~eegldYA~kai~~~~~~~~-~l~~~~~l~lGi~y~~~A~~a~~~---------seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLLGGQRS-HLKPRGYLFLGIAYGFQARQANLK---------SERDALHKKSLQALEEAVQ 472 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHhHhhcCCCh---------HHHHHHHHHHHHHHHHHHh
Confidence 556789999999999999984311111 011235666666664432211100 00000 112778899999
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHH
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL 549 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 549 (766)
.+|.++.+.+.++.-|..+++.+.|....+++++.+ .+++.+|..++.++...+++.+|+...+.++.-.|++ .....
T Consensus 473 ~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 473 FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 999999999999999999999999999999999994 5668999999999999999999999999999988876 21111
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc----chhHHhhHHHHHHhCCHHHHHHHHHHHHcc---C---ChHH
Q 004243 550 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK----GQALNNLGSIYVECGKLDQAENCYINALDI---K---HTRA 619 (766)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~---~~~~ 619 (766)
....- ...++.++++..+...+.- ..+-..++ .|. ..-....+.. + .+..
T Consensus 553 ~~~i~-----------~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~-----~g~----~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 553 KIHIE-----------LTFNDREEALDTCIHKLALWEAEYGVQQTLD-----EGK----LLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred hhhhh-----------hhcccHHHHHHHHHHHHHHHHhhhhHhhhhh-----hhh----hhhhhcccccCcccccccchh
Confidence 11111 1122444444433322210 00000000 010 0001111111 0 0111
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHH-HHhccCCHH-----HHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 004243 620 HQGLARVYYLKNELKAAYDEMTKL-LEKAQYSAS-----AFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAA 689 (766)
Q Consensus 620 ~~~la~~~~~~g~~~~A~~~~~~~-l~~~p~~~~-----~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 689 (766)
...+......++........+.+. ....|+..+ .|...+ ..+..++|..++.++-.++|..+..|+..|.
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGL 692 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhH
Confidence 111111111111100000000000 011122221 233333 4577799999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHH--HHHHHHccCCCChhHHHHHHHHHHhhh
Q 004243 690 VLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIR--DSQAALCLDPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 690 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~ 762 (766)
++...|++.+|.+.|..++.++|++ +....+|.++.+.|+..-|.. .+..+++++|.++++|..++.+-+...
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999 677799999999999888888 999999999999999999999877654
No 70
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=165.76 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=139.5
Q ss_pred ccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCC--eEEecCCCCCHHHHHHHHHHhhcCCCCCCC
Q 004243 47 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRK--TIDFSHDGVSVEGLRAVEVYTRTSRVDLFC 124 (766)
Q Consensus 47 ~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~--~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~ 124 (766)
.++.+++-|||++..-|++++.||..| ..|+||++||+|.|+|++++ .++|+++.|+.++|..++.-+|.++|+ +.
T Consensus 62 ~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~ 139 (488)
T KOG4682|consen 62 NLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IK 139 (488)
T ss_pred HHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-cc
Confidence 455789999999999999999999999 56999999999999999998 455678899999999999999999999 99
Q ss_pred HHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccccc
Q 004243 125 PGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVM 198 (766)
Q Consensus 125 ~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~ 198 (766)
.+.+..++.+|+.+++++|.+.|.+.+++.|+ ++|++..++.+..|+...+++.|++++..|+..+....-+.
T Consensus 140 l~dv~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ 212 (488)
T KOG4682|consen 140 LSDVVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLK 212 (488)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999987776333
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=2.5e-17 Score=153.49 Aligned_cols=242 Identities=15% Similarity=0.051 Sum_probs=218.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHH
Q 004243 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN 435 (766)
Q Consensus 356 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~ 435 (766)
..+|.||+.+|-+.+|.+.++.+++..|.++.+.+++.+|....+...|+..|.+.++..|.+.. .+...+.++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT------~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT------YLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh------hhhhhHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999985 667788999
Q ss_pred HHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHH
Q 004243 436 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV 515 (766)
Q Consensus 436 ~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 515 (766)
+..++++.| ++.|+.+++.+|.+.++..-+|..|+..++++-|+.+|++.+++.-.+++.+.
T Consensus 301 eam~~~~~a------------------~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~ 362 (478)
T KOG1129|consen 301 EAMEQQEDA------------------LQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFC 362 (478)
T ss_pred HHHHhHHHH------------------HHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHh
Confidence 999999988 55679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHH
Q 004243 516 YEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIY 595 (766)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~ 595 (766)
++|.+.+..++++-++..|++++....+. + +..++|+++|.+.
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~-----------------~--------------------~aaDvWYNlg~va 405 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQP-----------------G--------------------QAADVWYNLGFVA 405 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCc-----------------c--------------------hhhhhhhccceeE
Confidence 99999999999999999999999754322 0 0157899999999
Q ss_pred HHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh
Q 004243 596 VECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (766)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 658 (766)
...|++.-|..+|+-++.. ++.++++++|.+-.+.|+.++|..+++.+-...|+-.+...+++
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999988 57789999999999999999999999999988887666554443
No 72
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=3.9e-15 Score=157.77 Aligned_cols=302 Identities=12% Similarity=0.047 Sum_probs=227.5
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccC
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (766)
++......|...+..|+++.|.+.+.++.+..|..... +...+......|
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~------------------------------~llaA~aa~~~g 132 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN------------------------------LIKAAEAAQQRG 132 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH------------------------------HHHHHHHHHHCC
Confidence 45556678999999999999999999988876654333 222333334455
Q ss_pred cH--HHHHHHHHHhcCCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004243 335 RE--KIVDLNYASELDPTLS-FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLA 410 (766)
Q Consensus 335 ~~--A~~~~~~al~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~ 410 (766)
+. |...+.++.+..|++. .+....+.++...|++++|+..+++.++..| ++..+..++.++...|++++|.+.+.+
T Consensus 133 ~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 133 DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 53 8888999999889886 4666679999999999999999999999999 555566699999999999999999999
Q ss_pred HHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCC----CChhHHHHHHHH
Q 004243 411 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP----GKSFLRFRQSLL 486 (766)
Q Consensus 411 al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p----~~~~~~~~la~~ 486 (766)
..+..+.++............+.+ ..+..+.+ +..+.++....| +++..+...+..
T Consensus 213 l~k~~~~~~~~~~~l~~~a~~~~l--~~~~~~~~------------------~~~L~~~~~~~p~~~~~~~~l~~~~a~~ 272 (409)
T TIGR00540 213 MAKAGLFDDEEFADLEQKAEIGLL--DEAMADEG------------------IDGLLNWWKNQPRHRRHNIALKIALAEH 272 (409)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHH--HHHHHhcC------------------HHHHHHHHHHCCHHHhCCHHHHHHHHHH
Confidence 998754444200000000011111 11111111 234456666666 589999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchhhH--HHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCCh
Q 004243 487 LLRLNCQKAAMRCLRLARNHSSSEHERL--VYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 564 (766)
Q Consensus 487 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 564 (766)
+...|++++|.+.++++++..|++.... ..........++.+.+++.++++++..|++
T Consensus 273 l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~-------------------- 332 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK-------------------- 332 (409)
T ss_pred HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC--------------------
Confidence 9999999999999999999999987532 333444455688899999999999999987
Q ss_pred HHHHHHHHHHHhchhhccccc--hhHHhhHHHHHHhCCHHHHHHHHHH--HHccC-ChHHHHHHHHHHHHhccHHHHHHH
Q 004243 565 TYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYIN--ALDIK-HTRAHQGLARVYYLKNELKAAYDE 639 (766)
Q Consensus 565 ~~~~~~~~~A~~~~~~~l~~~--~~~~~lg~~~~~~g~~~~A~~~~~~--al~~~-~~~~~~~la~~~~~~g~~~~A~~~ 639 (766)
+ .....+|.++...|++++|.++|++ +++.. ++..+..+|.++...|+.++|.++
T Consensus 333 --------------------~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 333 --------------------PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred --------------------hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4 5677899999999999999999994 65553 345577999999999999999999
Q ss_pred HHHHHHh
Q 004243 640 MTKLLEK 646 (766)
Q Consensus 640 ~~~~l~~ 646 (766)
+++++..
T Consensus 393 ~~~~l~~ 399 (409)
T TIGR00540 393 RQDSLGL 399 (409)
T ss_pred HHHHHHH
Confidence 9998754
No 73
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=4e-18 Score=171.72 Aligned_cols=253 Identities=16% Similarity=0.134 Sum_probs=76.2
Q ss_pred HHHHhccCcH--HHHHHHHHHhc--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhH
Q 004243 327 ERSLYNLGRE--KIVDLNYASEL--DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDY 401 (766)
Q Consensus 327 ~~~~~~~~~~--A~~~~~~al~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~ 401 (766)
+..++..++. |++.+++.+.. .|+++..|..+|.+....++++.|+..|++++..++. +..+..++.+ ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4444444443 55555443322 2555555555666666666666666666666655552 2223234444 455666
Q ss_pred HHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcC--CCChhH
Q 004243 402 ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--PGKSFL 479 (766)
Q Consensus 402 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~--p~~~~~ 479 (766)
++|+..++++.+..++.. .+.....++...+.++++...+ .++.... |.++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~-------~l~~~l~~~~~~~~~~~~~~~l------------------~~~~~~~~~~~~~~~ 148 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPR-------YLLSALQLYYRLGDYDEAEELL------------------EKLEELPAAPDSARF 148 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHH------------------HHHHH-T---T-HHH
T ss_pred cccccccccccccccccc-------hhhHHHHHHHHHhHHHHHHHHH------------------HHHHhccCCCCCHHH
Confidence 666666555554433221 2222333344444444443222 2222222 345555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCC
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL 559 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~ 559 (766)
|..+|.++.+.|++++|+..++++++.+|+++.+...++.++...|+++++.+.++...+..|++
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~--------------- 213 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD--------------- 213 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH---------------
Confidence 55566666666666666666666666666666555556666655566555555555444433333
Q ss_pred CCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHH
Q 004243 560 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAY 637 (766)
Q Consensus 560 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~ 637 (766)
+..+..+|.++...|++++|+.+|+++++. +++..+..+|.++...|+.++|.
T Consensus 214 -------------------------~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 214 -------------------------PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp -------------------------CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred -------------------------HHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 455677777788888888888888887776 35567777788888888888887
Q ss_pred HHHHHHHH
Q 004243 638 DEMTKLLE 645 (766)
Q Consensus 638 ~~~~~~l~ 645 (766)
..+.+++.
T Consensus 269 ~~~~~~~~ 276 (280)
T PF13429_consen 269 RLRRQALR 276 (280)
T ss_dssp --------
T ss_pred cccccccc
Confidence 77777654
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.7e-16 Score=151.63 Aligned_cols=354 Identities=13% Similarity=0.090 Sum_probs=247.4
Q ss_pred HHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHH
Q 004243 297 AKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE 374 (766)
Q Consensus 297 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 374 (766)
....++.++..+..++++.|+. ...|..++..+...+++ |....++.++++|.....+...+.++...++..+|...
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 3556778999999999999955 77787888887777775 99999999999999999999999999999999888887
Q ss_pred HHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhh
Q 004243 375 IDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRW 454 (766)
Q Consensus 375 ~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~ 454 (766)
++.. .| +....|+..+++.+..+...+. ...+..+-+.+....++++.|.
T Consensus 140 ~~~~---~~---------------~~~anal~~~~~~~~s~s~~pa---c~~a~~lka~cl~~~~~~~~a~--------- 189 (486)
T KOG0550|consen 140 LKSK---QA---------------YKAANALPTLEKLAPSHSREPA---CFKAKLLKAECLAFLGDYDEAQ--------- 189 (486)
T ss_pred hhhh---hh---------------hHHhhhhhhhhcccccccCCch---hhHHHHhhhhhhhhcccchhHH---------
Confidence 7711 11 0233344444443332222221 1124445556666667777764
Q ss_pred cccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchh------------hHHHHHHHHH
Q 004243 455 SSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE------------RLVYEGWILY 522 (766)
Q Consensus 455 ~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~------------~~~~lg~~~~ 522 (766)
..-...+++++.+.++++..|.++...++.+.|+..|++++.++|+... .+...|.-.+
T Consensus 190 ---------~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f 260 (486)
T KOG0550|consen 190 ---------SEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF 260 (486)
T ss_pred ---------HHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh
Confidence 3336778889999999999999999999999999999999999988633 4556688899
Q ss_pred HCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCH
Q 004243 523 DTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKL 601 (766)
Q Consensus 523 ~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~ 601 (766)
+.|++..|.+.|..+|.++|++ ... ...|.+++.+...+|+.
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~n-------------------------------------aklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTN-------------------------------------AKLYGNRALVNIRLGRL 303 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchh-------------------------------------HHHHHHhHhhhcccCCc
Confidence 9999999999999999999987 100 35688889999999999
Q ss_pred HHHHHHHHHHHccCCh--HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCC
Q 004243 602 DQAENCYINALDIKHT--RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPL 679 (766)
Q Consensus 602 ~~A~~~~~~al~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 679 (766)
.+|+...+.++++++. .++...|.++..+++|++|.+.|+++++...+ ......+ .+|...++++-.
T Consensus 304 ~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l------~~A~~aLkkSkR---- 372 (486)
T KOG0550|consen 304 REAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTL------REAQLALKKSKR---- 372 (486)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHH------HHHHHHHHHhhh----
Confidence 9999999999999654 68888999999999999999999999887655 2222111 222222332211
Q ss_pred CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH--------HHH-HHHHHHHHcCCHHHHHHHHHHH
Q 004243 680 RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ--------MLH-LRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 680 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~-~la~~~~~~g~~~~A~~~~~~a 740 (766)
..-|..+|....... .+.-..+=..+|...|+-. ..+ ..|..|...+++.++.+.+.-.
T Consensus 373 -kd~ykilGi~~~as~-~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 373 -KDWYKILGISRNASD-DEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred -hhHHHHhhhhhhccc-chhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 222334443332221 1111122233454455431 112 5688888889988888776543
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2e-16 Score=159.53 Aligned_cols=254 Identities=15% Similarity=0.109 Sum_probs=201.7
Q ss_pred HHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhh
Q 004243 323 WMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAAD 399 (766)
Q Consensus 323 ~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g 399 (766)
-+..|..++..|.- |+-.|+.++..+|.+..+|..+|.+....++-..|+..++++++++|+...... +|..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 45678888989984 999999999999999999999999999999999999999999999996655544 999999999
Q ss_pred hHHHHHHHHHHHHhccCCccccccc-chhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCC--CC
Q 004243 400 DYESALRDTLALLALESNYMMFHGR-VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP--GK 476 (766)
Q Consensus 400 ~~~~A~~~~~~al~~~p~~~~~~~~-~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p--~~ 476 (766)
.-.+|+..+.+-+...|........ ........ +.+.....+.. -...|-.+....| .+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~------~s~~~~~~l~~------------i~~~fLeaa~~~~~~~D 429 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT------KSFLDSSHLAH------------IQELFLEAARQLPTKID 429 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC------cCCCCHHHHHH------------HHHHHHHHHHhCCCCCC
Confidence 9999999999999987766531100 00000000 00000000000 0223556666677 78
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHh
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 556 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 556 (766)
+++...+|.+|...|+|++|+.+|+.|+...|++...|..+|-.+....+.++|+..|.+|+++.|++
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y------------ 497 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY------------ 497 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC------------hHHHHHHH
Q 004243 557 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH------------TRAHQGLA 624 (766)
Q Consensus 557 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------~~~~~~la 624 (766)
..+++++|..++.+|.|++|..+|-.|+.+.. ..+|..|-
T Consensus 498 ----------------------------VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR 549 (579)
T KOG1125|consen 498 ----------------------------VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR 549 (579)
T ss_pred ----------------------------eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH
Confidence 66788999999999999999999999998721 13565555
Q ss_pred HHHHHhccHH
Q 004243 625 RVYYLKNELK 634 (766)
Q Consensus 625 ~~~~~~g~~~ 634 (766)
.++...++.+
T Consensus 550 ~als~~~~~D 559 (579)
T KOG1125|consen 550 LALSAMNRSD 559 (579)
T ss_pred HHHHHcCCch
Confidence 5555555554
No 76
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.6e-13 Score=131.50 Aligned_cols=446 Identities=12% Similarity=0.009 Sum_probs=251.6
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHH-------hccHHHHHHHHhhhccCCCchhHHHHH
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYK-------VGQQYSAYKLINSIISEHKPTGWMYQE 327 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~ 327 (766)
....+...|.--..++++..|.+.|++|+..+..+... ...|.. -..|...+++++..+|. ...-|+...
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itL--WlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITL--WLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHH
Confidence 34556677777888999999999999999887655433 211111 11244444555555542 122222211
Q ss_pred HHHhccCc--HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHH
Q 004243 328 RSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESAL 405 (766)
Q Consensus 328 ~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~ 405 (766)
..--..|+ .|.+.|++-++..|+ ..+|......-.+.+..+.|...|++.+-..|....+...+..-.+.|+..-|.
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 11111222 255555555555553 344444444445555555555555555555554444444555555555555555
Q ss_pred HHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCCh--hHHHHH
Q 004243 406 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS--FLRFRQ 483 (766)
Q Consensus 406 ~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~--~~~~~l 483 (766)
..|+++++.-.++... .......+.....+..++.|. ..|.-++..-|.+. ..+-..
T Consensus 228 ~VyerAie~~~~d~~~---e~lfvaFA~fEe~qkE~ERar------------------~iykyAld~~pk~raeeL~k~~ 286 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEA---EILFVAFAEFEERQKEYERAR------------------FIYKYALDHIPKGRAEELYKKY 286 (677)
T ss_pred HHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHhcCcccHHHHHHHH
Confidence 5555555533332210 001111222222333333332 12344444444442 222222
Q ss_pred HHHHHhcCCH---HHHHH-----HHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHH
Q 004243 484 SLLLLRLNCQ---KAAMR-----CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 554 (766)
Q Consensus 484 a~~~~~~g~~---~~A~~-----~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l 554 (766)
...--+-|+. +.++. .|+..+..+|.+.++|+.+-.+....|+.+.-.+.|++|+..-|.. +-.+..-+.
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYI- 365 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYI- 365 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHH-
Confidence 2222222332 22221 2344455555555555555555555555555555555555544433 111101111
Q ss_pred HhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhH-HHHHHhCCHHHHHHHHHHHHccC------ChHHHHHHHHHH
Q 004243 555 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLG-SIYVECGKLDQAENCYINALDIK------HTRAHQGLARVY 627 (766)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~la~~~ 627 (766)
-.|.+.+ ..-+...+.+.+.+.|+.++++- ....|...|...
T Consensus 366 -------------------------------YLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 366 -------------------------------YLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred -------------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 1122222 12245678888888998888872 235788888888
Q ss_pred HHhccHHHHHHHHHHHHHhccCCHHH--HHHHh-hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHH
Q 004243 628 YLKNELKAAYDEMTKLLEKAQYSASA--FEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEEL 704 (766)
Q Consensus 628 ~~~g~~~~A~~~~~~~l~~~p~~~~~--~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 704 (766)
.++.+...|.+.+..++...|.+-.. |..+- .+++++.....|++-++..|.+..+|...|.+-..+|+.+.|...|
T Consensus 415 IRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88888899999999998888876543 33333 6688888899999999999999999999999888899999999999
Q ss_pred HHHHhcCCCh-HHHH--HHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q 004243 705 SKAIAFKPDL-QMLH--LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 758 (766)
Q Consensus 705 ~~al~~~p~~-~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 758 (766)
+-|++...-+ +.+. .....-...|.++.|...|++.|+..+..+ +|...+..+
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe 550 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFE 550 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHh
Confidence 8888764433 4444 345555667889999999999998877654 665555444
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=1.7e-14 Score=152.00 Aligned_cols=305 Identities=12% Similarity=0.101 Sum_probs=222.8
Q ss_pred HHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhcc
Q 004243 254 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (766)
Q Consensus 254 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (766)
.++...+..|...+..|+|+.|.+...++.+..+..... +...+......
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~------------------------------~llaA~aA~~~ 131 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVN------------------------------YLLAAEAAQQR 131 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHH------------------------------HHHHHHHHHHC
Confidence 356667788999999999999997777755432211111 11112222335
Q ss_pred CcH--HHHHHHHHHhcCCCCchHH-HHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004243 334 GRE--KIVDLNYASELDPTLSFPY-KYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTL 409 (766)
Q Consensus 334 ~~~--A~~~~~~al~~~p~~~~~~-~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~ 409 (766)
|+. |...|.++.+.+|++..+. ...+..+...|++++|+..++++.+..| ++..+..++.+|...|++++|+..+.
T Consensus 132 g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~ 211 (398)
T PRK10747 132 GDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILP 211 (398)
T ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 554 8899999999999986443 4559999999999999999999999999 45556669999999999999999999
Q ss_pred HHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHh
Q 004243 410 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 489 (766)
Q Consensus 410 ~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~ 489 (766)
+..+..+.++............+......+..+ +.. + ....+...+..|+++.+....+..+..
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~-~~~-l--------------~~~w~~lp~~~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 212 SMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG-SEG-L--------------KRWWKNQSRKTRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC-HHH-H--------------HHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence 998876665421100000011111111111100 000 0 112233333457789999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHH
Q 004243 490 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQ 569 (766)
Q Consensus 490 ~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 569 (766)
.|+.++|...++++++. |.++.....++.+ ..++.+++++..++.++.+|++
T Consensus 276 ~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~------------------------- 327 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDT------------------------- 327 (398)
T ss_pred CCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC-------------------------
Confidence 99999999999999995 5556555555544 4499999999999999999997
Q ss_pred HHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Q 004243 570 LLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT-RAHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (766)
Q Consensus 570 ~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 647 (766)
+..+..+|.++...|++++|.+.|+++++..|. ..+..++.++...|+.++|..+|++++...
T Consensus 328 ---------------~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 328 ---------------PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 667888999999999999999999999999654 456899999999999999999999998653
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=1.3e-15 Score=149.78 Aligned_cols=201 Identities=18% Similarity=0.169 Sum_probs=171.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHH
Q 004243 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 554 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l 554 (766)
..+..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------- 98 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---------- 98 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------
Confidence 3467889999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC----ChHHHHHHHHHHHHh
Q 004243 555 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLK 630 (766)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~la~~~~~~ 630 (766)
...+.++|.++...|++++|+..|++++... ....+..+|.++...
T Consensus 99 ------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 99 ------------------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred ------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 4567788899999999999999999998752 345788888888888
Q ss_pred ccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 004243 631 NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 710 (766)
Q Consensus 631 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 710 (766)
|++++|...+.+++... |.++.++..+|.++...|++++|...+++++..
T Consensus 149 g~~~~A~~~~~~~~~~~------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 149 GDFDKAEKYLTRALQID------------------------------PQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred CCHHHHHHHHHHHHHhC------------------------------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888877777776554 445566778888999999999999999999888
Q ss_pred CCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004243 711 KPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDP 745 (766)
Q Consensus 711 ~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 745 (766)
.|.+ ..+..++.++...|+.++|....+.+....|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 199 YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 7766 4445778888899999999998888776654
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.72 E-value=3.4e-13 Score=137.88 Aligned_cols=427 Identities=14% Similarity=0.059 Sum_probs=281.4
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 335 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (766)
-.++|....-.+..++|...++..+..+...|..... ....|..+...|+
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges------------------------------lAmkGL~L~~lg~ 56 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES------------------------------LAMKGLTLNCLGK 56 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh------------------------------HHhccchhhcccc
Confidence 3456777777788888888888888888866655443 3334444444555
Q ss_pred --HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Q 004243 336 --EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC-LELRAWLFIAADDYESALRDTLALL 412 (766)
Q Consensus 336 --~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~~g~~~~A~~~~~~al 412 (766)
+|......++..|+.....|.-+|.++....+|++|+++|..|+.+.|++.. ++-++.+..++++++.....-.+.+
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL 136 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL 136 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4778888899999999999999999999999999999999999999995554 5559999999999999999999999
Q ss_pred hccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCC-----ChhHHHHHHHHH
Q 004243 413 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-----KSFLRFRQSLLL 487 (766)
Q Consensus 413 ~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~-----~~~~~~~la~~~ 487 (766)
+..|.... .|...+..+...|.+..|...++.+. +.....|. ..........+.
T Consensus 137 ql~~~~ra------~w~~~Avs~~L~g~y~~A~~il~ef~---------------~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 137 QLRPSQRA------SWIGFAVAQHLLGEYKMALEILEEFE---------------KTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred HhhhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HhhccCCCHHHHHHHHHHHHHHHHH
Confidence 99998874 56667777777778877765553333 22222222 234556677778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHH
Q 004243 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 566 (766)
Q Consensus 488 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~ 566 (766)
...|.+++|++.+..--...-+........|.++.+++++++|+..|...+..+|++ ..+..+-.++....
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~-------- 267 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIK-------- 267 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHh--------
Confidence 888999999888775443333334455667899999999999999999999999999 77777666665111
Q ss_pred HHHHHHHHH-hchhhccc---cchhHHhhHHHHHHhCCHHHHHH-HHHHHHccCChHHHHHHHHHHHHhccH---HHHHH
Q 004243 567 VIQLLEEAL-RCPSDGLR---KGQALNNLGSIYVECGKLDQAEN-CYINALDIKHTRAHQGLARVYYLKNEL---KAAYD 638 (766)
Q Consensus 567 ~~~~~~~A~-~~~~~~l~---~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~la~~~~~~g~~---~~A~~ 638 (766)
.--+++ ..|....+ ....-..++.....-.++.+... ++...++.+-|.....+-..|...... ++-+.
T Consensus 268 ---d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt 344 (700)
T KOG1156|consen 268 ---DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVT 344 (700)
T ss_pred ---hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHH
Confidence 111122 22222211 11222333333332233333332 333344444344444444433322211 11111
Q ss_pred HHHHHHHhc------------cCCHHHH--HHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHH
Q 004243 639 EMTKLLEKA------------QYSASAF--EKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA 700 (766)
Q Consensus 639 ~~~~~l~~~------------p~~~~~~--~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 700 (766)
.|...+.-. |...-+| +.++ ..|+++.|..+++.|+..-|..++.+...|+++...|+.++|
T Consensus 345 ~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eA 424 (700)
T KOG1156|consen 345 SYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEA 424 (700)
T ss_pred HHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHH
Confidence 122222111 2222222 2222 458888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 701 VEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 701 ~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~ 744 (766)
...+..+-+++-.+..+. .-|....+.++.++|.+...+.-+..
T Consensus 425 a~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 425 AAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 888888888876665555 55777777888888888777665544
No 80
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.72 E-value=9.1e-18 Score=173.57 Aligned_cols=144 Identities=19% Similarity=0.280 Sum_probs=125.9
Q ss_pred CCCCceEEEE-cCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhh-cCCCCC----CCH
Q 004243 52 EEDDSVTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTR-TSRVDL----FCP 125 (766)
Q Consensus 52 ~~~~dv~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~y-t~~~~~----~~~ 125 (766)
++.-|++|.. +|+.|+|||++|++|++||..||...|.|++.-.+.. ..++.+.|..+|+|+| ++++.. -..
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~--~p~~~e~m~ivLdylYs~d~~~~~k~~~~~ 785 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNL--SPLTVEHMSIVLDYLYSDDKVELFKDLKES 785 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeec--CcchHHHHHHHHHHHHccchHHHHhccchh
Confidence 3344888777 8899999999999999999999999999988866666 6777999999999999 454442 345
Q ss_pred HHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccccc
Q 004243 126 GIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVM 198 (766)
Q Consensus 126 ~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~ 198 (766)
+.+.+++.+||.|.+.+|+..|+..|.+.|+ ..||-.+++||..|+|++|...|++||..|+..++.-.+..
T Consensus 786 dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~ 857 (1267)
T KOG0783|consen 786 DFMFEILSIADQLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSIS 857 (1267)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHh
Confidence 7789999999999999999999999999999 99999999999999999999999999999998776554443
No 81
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.71 E-value=3.8e-17 Score=133.60 Aligned_cols=90 Identities=32% Similarity=0.429 Sum_probs=86.1
Q ss_pred ceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHh
Q 004243 56 SVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFA 135 (766)
Q Consensus 56 dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~~l~~a 135 (766)
||+|.++|++|++||.+|+++|+||+.||.+++.++....|.+ +++++++|+.+|+|+||+++. ++.+++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l--~~~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYL--DDVSPEDFRALLEFLYTGKLD-LPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEe--cCCCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence 7999999999999999999999999999999999888889999 889999999999999999999 8888999999999
Q ss_pred hhhChHhHHHHHH
Q 004243 136 NRFCCEEMKSACD 148 (766)
Q Consensus 136 ~~~~~~~l~~~c~ 148 (766)
+.|+++.|+..|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999995
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=6.3e-15 Score=144.92 Aligned_cols=185 Identities=16% Similarity=0.127 Sum_probs=157.3
Q ss_pred chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHH
Q 004243 510 EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALN 589 (766)
Q Consensus 510 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 589 (766)
.+..+..+|.++...|++++|+..++++++.+|++ ..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----------------------------------------~~~~~ 69 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD----------------------------------------YLAYL 69 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----------------------------------------HHHHH
Confidence 36788999999999999999999999999988876 45677
Q ss_pred hhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHH
Q 004243 590 NLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAK 667 (766)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~ 667 (766)
.+|.++...|++++|+..|+++++.. ++..+.++|.++...|++++|...+++++...+
T Consensus 70 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------------------- 130 (234)
T TIGR02521 70 ALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------------------- 130 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-------------------
Confidence 88889999999999999999999873 456888999999999999999888888875311
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 668 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 668 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 746 (766)
.|.....+..+|.++...|++++|...+++++..+|++ ..+..+|.++...|++++|...++++++..|.
T Consensus 131 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 131 ---------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred ---------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 23445678889999999999999999999999999988 45668999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHhhh
Q 004243 747 HMETLDLYNRARDQAS 762 (766)
Q Consensus 747 ~~~~~~~l~~~~~~~~ 762 (766)
+++.+..+..+....+
T Consensus 202 ~~~~~~~~~~~~~~~~ 217 (234)
T TIGR02521 202 TAESLWLGIRIARALG 217 (234)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 8888777766665443
No 83
>PLN02789 farnesyltranstransferase
Probab=99.69 E-value=8.7e-15 Score=146.41 Aligned_cols=239 Identities=13% Similarity=-0.021 Sum_probs=190.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCC-CHHHHHHHHHHHHccccchHHHHHHHHH
Q 004243 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIERTFEAFFLKAYI 553 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~ 553 (766)
+...++-.+-.++...+++++|+..+.++++++|.+..+|..+|.++..+| ++++++..++++++.+|++
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn--------- 105 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN--------- 105 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---------
Confidence 334455455556777889999999999999999999999999999999998 6799999999999999998
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCH--HHHHHHHHHHHccC--ChHHHHHHHHHHHH
Q 004243 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKL--DQAENCYINALDIK--HTRAHQGLARVYYL 629 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~--~~~~~~~la~~~~~ 629 (766)
..+|+..+.++...|+. ++++.+++++++.+ +..+|...+.++..
T Consensus 106 -------------------------------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 106 -------------------------------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT 154 (320)
T ss_pred -------------------------------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455555555555543 67888888998884 55799999999999
Q ss_pred hccHHHHHHHHHHHHHhccCCHHHHHHHhh----h---cCH----HHHHHHHHHHHhcCCCCchhHHHHHHHHHh----C
Q 004243 630 KNELKAAYDEMTKLLEKAQYSASAFEKRSE----Y---SDR----EMAKNDLNMATQLDPLRTYPYRYRAAVLMD----D 694 (766)
Q Consensus 630 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~----~---~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 694 (766)
.|+++++++.+.++++.+|.+..+|..++. . +.. ++++.+..+++..+|++..+|..++.++.. .
T Consensus 155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 999999999999999999999999998882 1 222 578888899999999999999999999988 4
Q ss_pred CCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcC------------------CHHHHHHHHHHHHccCCCChhHHHH
Q 004243 695 QKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIG------------------DLTSAIRDSQAALCLDPNHMETLDL 753 (766)
Q Consensus 695 g~~~~A~~~~~~al~~~p~~~-~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~ 753 (766)
++..+|++.+.+++..+|++. ++-.++.+|.... ..++|.+.++..-+.||=-..-|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 567889999999999888874 4447788887532 3467888888876667655554544
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.1e-13 Score=129.67 Aligned_cols=231 Identities=11% Similarity=0.027 Sum_probs=114.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHH
Q 004243 358 RAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNH 436 (766)
Q Consensus 358 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~ 436 (766)
.|.-+.-.++.++|++.|-.+++.+|......+ +|.++...|..+.|+..-+..++ .|+.. +..+..++..+|.-|.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT-~~qr~lAl~qL~~Dym 118 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLT-FEQRLLALQQLGRDYM 118 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCc-hHHHHHHHHHHHHHHH
Confidence 344444455555555555555555553333333 55555555555555555444332 23332 2223345555555555
Q ss_pred HHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----h
Q 004243 437 HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-----H 511 (766)
Q Consensus 437 ~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~ 511 (766)
..|.++.|+..+ ....+...--..+...+..+|....+|++|++.-++..++.+.. +
T Consensus 119 ~aGl~DRAE~~f------------------~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA 180 (389)
T COG2956 119 AAGLLDRAEDIF------------------NQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA 180 (389)
T ss_pred HhhhhhHHHHHH------------------HHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH
Confidence 555555554222 22222122223344445555555555555555555555544433 2
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhh
Q 004243 512 ERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNL 591 (766)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~l 591 (766)
..+..++..+....+.+.|+..+.++++.+|+. ..+-..+
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c----------------------------------------vRAsi~l 220 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQADKKC----------------------------------------VRASIIL 220 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc----------------------------------------eehhhhh
Confidence 334444555555555555555555555555554 2333445
Q ss_pred HHHHHHhCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Q 004243 592 GSIYVECGKLDQAENCYINALDIKHT---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 648 (766)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 648 (766)
|.++...|+|+.|++.++.+++.++. .+...|..+|...|+.++....+.++.+..+
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 55555555555555555555555432 3455566666666666666666666655543
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.67 E-value=3.3e-13 Score=137.98 Aligned_cols=357 Identities=16% Similarity=0.113 Sum_probs=196.9
Q ss_pred HHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhh
Q 004243 323 WMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAAD 399 (766)
Q Consensus 323 ~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g 399 (766)
++....-.|..+++ .++..+.+++..|.++..+..+|..+..+|+-++|......+++.++ ++.+|+.+|.++....
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 33344444444444 55555555555565555555556555556666666655555555555 4455555555555555
Q ss_pred hHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhH
Q 004243 400 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 479 (766)
Q Consensus 400 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~ 479 (766)
+|++|++.|+.|+.++|+|. ..
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~----------------------------------------------------------qi 111 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNL----------------------------------------------------------QI 111 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcH----------------------------------------------------------HH
Confidence 56666666655555555555 44
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc---cch-H-----HHHHH
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE---RTF-E-----AFFLK 550 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~-~-----~~~~~ 550 (766)
|..++.+..++++++.....-.+.++..|.....|...+..+.-.|++..|....+...+.. |+. . .....
T Consensus 112 lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~ 191 (700)
T KOG1156|consen 112 LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ 191 (700)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 44444444444444444444444455555544455555555555555555544444433322 221 1 11111
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHhchhhcc----ccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChH--HHHHHH
Q 004243 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGL----RKGQALNNLGSIYVECGKLDQAENCYINALDIKHTR--AHQGLA 624 (766)
Q Consensus 551 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~la 624 (766)
...+...+ .+++|++.+...- ..-......|.++..++++++|...|...+..+|.. .+..+-
T Consensus 192 n~i~~E~g-----------~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 192 NQILIEAG-----------SLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHcc-----------cHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHH
Confidence 11111222 3344444333221 123445677899999999999999999999886543 344444
Q ss_pred HHHHHhccHHHHH-HHHHHHHHhccCCHHH-------------------HH----HHh----------hhcCH------H
Q 004243 625 RVYYLKNELKAAY-DEMTKLLEKAQYSASA-------------------FE----KRS----------EYSDR------E 664 (766)
Q Consensus 625 ~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~-------------------~~----~~~----------~~~~~------~ 664 (766)
.++..-.+.-++. ..|...-+..|..... |. ..| .+.+. +
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le 340 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLE 340 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHH
Confidence 4443222223333 4444443333322110 11 111 11121 1
Q ss_pred HHHHHHHHHHhcC------------CCC--chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCC
Q 004243 665 MAKNDLNMATQLD------------PLR--TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGD 729 (766)
Q Consensus 665 ~A~~~~~~al~~~------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~ 729 (766)
+-+..|...+.-. |-. ...++.++.-+...|+++.|..+++.|+...|+....+ ..|.++.+.|+
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~ 420 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGL 420 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCC
Confidence 1222222222111 111 23345678888899999999999999999999996666 77999999999
Q ss_pred HHHHHHHHHHHHccCCCCh
Q 004243 730 LTSAIRDSQAALCLDPNHM 748 (766)
Q Consensus 730 ~~~A~~~~~~al~~~p~~~ 748 (766)
+++|...+..+-++|-.+.
T Consensus 421 l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 421 LDEAAAWLDEAQELDTADR 439 (700)
T ss_pred hHHHHHHHHHHHhccchhH
Confidence 9999999999999986543
No 86
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=4.5e-13 Score=125.64 Aligned_cols=257 Identities=14% Similarity=0.094 Sum_probs=214.7
Q ss_pred cHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH------HHHHHHHHHHhhhhHHHHHHHH
Q 004243 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD------CLELRAWLFIAADDYESALRDT 408 (766)
Q Consensus 335 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~a~~~~~~g~~~~A~~~~ 408 (766)
+.|+..|-..++.+|...++...+|..+...|..+.|+..-+..++ .|+.. ....+|.-|+..|-++.|...|
T Consensus 52 dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 52 DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3599999999999999999999999999999999999998887764 34211 2344999999999999999999
Q ss_pred HHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCC-----hhHHHHH
Q 004243 409 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-----SFLRFRQ 483 (766)
Q Consensus 409 ~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~-----~~~~~~l 483 (766)
....+. |.... .++..+-.+|.....|++|. ....+..+..|.. +..+..+
T Consensus 131 ~~L~de-~efa~-----~AlqqLl~IYQ~treW~KAI------------------d~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 131 NQLVDE-GEFAE-----GALQQLLNIYQATREWEKAI------------------DVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHhcc-hhhhH-----HHHHHHHHHHHHhhHHHHHH------------------HHHHHHHHcCCccchhHHHHHHHHH
Confidence 987753 44442 58899999999999999994 3445666666544 4568889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCC
Q 004243 484 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 563 (766)
Q Consensus 484 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~ 563 (766)
+..+....+.+.|+..+.++++.+|+...+-..+|.++...|+|+.|++.++.+++.||+.
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y------------------- 247 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY------------------- 247 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHhccHHHHHHHHHH
Q 004243 564 STYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTK 642 (766)
Q Consensus 564 ~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 642 (766)
-+++...|..+|...|+.++.+..+.++.+. ..+++...++..-....-.+.|...+.+
T Consensus 248 --------------------l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 248 --------------------LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred --------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHH
Confidence 0345567778899999999999999999988 4556777777777777778888888888
Q ss_pred HHHhccCCHHHHH
Q 004243 643 LLEKAQYSASAFE 655 (766)
Q Consensus 643 ~l~~~p~~~~~~~ 655 (766)
-+...|+-...+.
T Consensus 308 Ql~r~Pt~~gf~r 320 (389)
T COG2956 308 QLRRKPTMRGFHR 320 (389)
T ss_pred HHhhCCcHHHHHH
Confidence 8888887554443
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.66 E-value=1.4e-13 Score=143.60 Aligned_cols=238 Identities=20% Similarity=0.160 Sum_probs=169.7
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.|........++..|...|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+.-..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666677788999999999999999999999987 45555566679999999999999999999999864211
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc-------CCh
Q 004243 545 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-------KHT 617 (766)
Q Consensus 545 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~~~ 617 (766)
.+..... -+.++.+||.+|...|++++|..++++|+++ .++
T Consensus 275 --------------~G~~h~~------------------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 275 --------------FGEDHPA------------------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred --------------cCCCCHH------------------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 0000000 0345666666666666666666666666665 122
Q ss_pred ---HHHHHHHHHHHHhccHHHHHHHHHHHHHhcc-----CC---HHHHHHHh----hhcCHHHHHHHHHHHHhcC-----
Q 004243 618 ---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQ-----YS---ASAFEKRS----EYSDREMAKNDLNMATQLD----- 677 (766)
Q Consensus 618 ---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~---~~~~~~~~----~~~~~~~A~~~~~~al~~~----- 677 (766)
..+.+++.++..++++++|..++++++++.. ++ +..+.++| ..|++++|.+.+++++.+.
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 2455666666666666666666666654431 12 23344444 3466666666666666443
Q ss_pred ---CCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 678 ---PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF----KPDL----QMLHLRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 678 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
+....++..+|..+.+.+++.+|...|.+++.+ -|++ ..+.++|.+|..+|++++|+++.++++.
T Consensus 403 ~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 403 KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 334678889999999999999999999999776 3433 3445999999999999999999999884
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.66 E-value=1.3e-13 Score=144.89 Aligned_cols=315 Identities=14% Similarity=0.015 Sum_probs=217.4
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-C---HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccccc
Q 004243 347 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S---VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 422 (766)
Q Consensus 347 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 422 (766)
.||+.+.++..+|..+...|+++.|...+.++.+..| + .+.....|.++...|++++|...++++++.+|++..
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~-- 78 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL-- 78 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--
Confidence 3799999999999999999999999999998887777 2 233555899999999999999999999999999883
Q ss_pred ccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004243 423 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 502 (766)
Q Consensus 423 ~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 502 (766)
++.. +..+...+....+.... ...+.......|.....+..+|.++...|++++|+..+++
T Consensus 79 ----a~~~-~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 139 (355)
T cd05804 79 ----ALKL-HLGAFGLGDFSGMRDHV--------------ARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARR 139 (355)
T ss_pred ----HHHH-hHHHHHhcccccCchhH--------------HHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3332 33333333322221000 1112223345667777888889999999999999999999
Q ss_pred HHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhc
Q 004243 503 ARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG 581 (766)
Q Consensus 503 a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~ 581 (766)
+++..|+++.++..+|.++...|++++|+..+++++...|.. ...
T Consensus 140 al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~---------------------------------- 185 (355)
T cd05804 140 ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLR---------------------------------- 185 (355)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchh----------------------------------
Confidence 999999999999999999999999999999999999877643 000
Q ss_pred cccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC-hHHHHH---H---HHHHHHhccHHHHHHHHHHHHHhccCCHHHH
Q 004243 582 LRKGQALNNLGSIYVECGKLDQAENCYINALDIKH-TRAHQG---L---ARVYYLKNELKAAYDEMTKLLEKAQYSASAF 654 (766)
Q Consensus 582 l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~---l---a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 654 (766)
...+..+|.++...|++++|+..|++++...+ ...+.. . ...+...|....+ ..++.+...
T Consensus 186 ---~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~w~~~~~~-------- 253 (355)
T cd05804 186 ---GHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG-DRWEDLADY-------- 253 (355)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH-HHHHHHHHH--------
Confidence 12466788999999999999999999876533 121111 1 1111112211111 111111111
Q ss_pred HHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----h------HHHHHHHHHH
Q 004243 655 EKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD----L------QMLHLRAAFY 724 (766)
Q Consensus 655 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~------~~~~~la~~~ 724 (766)
...... .+.........+.++...|+.++|...++........ . ......+.++
T Consensus 254 ---------------~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 254 ---------------AAWHFP-DHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred ---------------HHhhcC-cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 000000 0112233346778888899999999999887654211 1 1122669999
Q ss_pred HHcCCHHHHHHHHHHHHccC
Q 004243 725 ESIGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 725 ~~~g~~~~A~~~~~~al~~~ 744 (766)
...|++++|+..+..++.+.
T Consensus 318 ~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 318 FAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 99999999999999998765
No 89
>PLN02789 farnesyltranstransferase
Probab=99.66 E-value=3.4e-14 Score=142.18 Aligned_cols=211 Identities=10% Similarity=0.038 Sum_probs=139.3
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCH--HHHHHHHHHHHcc
Q 004243 464 AVINQMLINDPGKSFLRFRQSLLLLRLN-CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR--EEALSRAEKSISI 540 (766)
Q Consensus 464 ~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~ 540 (766)
..+.++++.+|.+..+|..++.++..+| ++++++..++++++.+|++..+|..++.++...|+. ++++..++++++.
T Consensus 58 ~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~ 137 (320)
T PLN02789 58 DLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL 137 (320)
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh
Confidence 3445666666666666666666666666 456666666666666666666666666666666653 4566666666666
Q ss_pred ccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChH
Q 004243 541 ERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTR 618 (766)
Q Consensus 541 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~ 618 (766)
+|++ ..+|..+|.++...|++++|++++.++++. .+..
T Consensus 138 dpkN----------------------------------------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 138 DAKN----------------------------------------YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred Cccc----------------------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 6665 334555555555556666666666666665 2445
Q ss_pred HHHHHHHHHHHh---cc----HHHHHHHHHHHHHhccCCHHHHHHHh----h----hcCHHHHHHHHHHHHhcCCCCchh
Q 004243 619 AHQGLARVYYLK---NE----LKAAYDEMTKLLEKAQYSASAFEKRS----E----YSDREMAKNDLNMATQLDPLRTYP 683 (766)
Q Consensus 619 ~~~~la~~~~~~---g~----~~~A~~~~~~~l~~~p~~~~~~~~~~----~----~~~~~~A~~~~~~al~~~p~~~~~ 683 (766)
+|..++.+.... |. .++++.+..+++..+|++..+|..++ . +++..+|+..+.+++..+|.++.+
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~a 257 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFA 257 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHH
Confidence 666666665544 22 24677777888888888888887776 1 234567888888888889999999
Q ss_pred HHHHHHHHHhCC------------------CHHHHHHHHHHHHhcCCCh
Q 004243 684 YRYRAAVLMDDQ------------------KEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 684 ~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~ 714 (766)
+-.++.+|.... ..++|.+.++..-+.+|=-
T Consensus 258 l~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir 306 (320)
T PLN02789 258 LSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMR 306 (320)
T ss_pred HHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHH
Confidence 999999997642 2366777777775445533
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.5e-11 Score=124.83 Aligned_cols=433 Identities=14% Similarity=0.047 Sum_probs=262.8
Q ss_pred hhhHHhhcccHHHHHHHHHHHHhcCccccHh--HHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCcHHHH
Q 004243 262 LGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIV 339 (766)
Q Consensus 262 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 339 (766)
--+.+...|+|++|.....+.+...|+...+ .-.....+.+.... |+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~------------------------------AL- 66 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYED------------------------------AL- 66 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHH------------------------------HH-
Confidence 3356678899999999999999998776555 11111111111111 22
Q ss_pred HHHHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Q 004243 340 DLNYASELDPT---LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALE 415 (766)
Q Consensus 340 ~~~~al~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 415 (766)
+.++.++. +....+.+|.|.++++..++|+..++- .++. .....+.|++++++|+|++|+..|+..++-+
T Consensus 67 ---k~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~---~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 67 ---KLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKG---LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred ---HHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhc---ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 23333332 112237899999999999999999992 3553 3356679999999999999999999998866
Q ss_pred CCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCC-ChhHHHHHHHHHHhcCCHH
Q 004243 416 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-KSFLRFRQSLLLLRLNCQK 494 (766)
Q Consensus 416 p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~ 494 (766)
.++.. .......+..... -.+ . ..+.....|. ..+.+++.|.++...|+|.
T Consensus 141 ~dd~d------~~~r~nl~a~~a~--l~~-------------------~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~ 192 (652)
T KOG2376|consen 141 SDDQD------EERRANLLAVAAA--LQV-------------------Q-LLQSVPEVPEDSYELLYNTACILIENGKYN 192 (652)
T ss_pred CchHH------HHHHHHHHHHHHh--hhH-------------------H-HHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence 55542 1111111111100 000 0 1222233343 5678999999999999999
Q ss_pred HHHHHHHHHHhc--------CCCc-------hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcC
Q 004243 495 AAMRCLRLARNH--------SSSE-------HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 558 (766)
Q Consensus 495 ~A~~~~~~a~~~--------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~ 558 (766)
+|++.+++++.+ +... ..+...++.++..+|+.++|...|...++.+|.+ .......+.+....
T Consensus 193 qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~ 272 (652)
T KOG2376|consen 193 QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALS 272 (652)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhc
Confidence 999999999432 1111 2356778999999999999999999999999887 33333333332222
Q ss_pred CCCCChH-HHHHHHHHHHh----chhhccc---cchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHH--HHHHHHHH
Q 004243 559 LDPESST-YVIQLLEEALR----CPSDGLR---KGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAH--QGLARVYY 628 (766)
Q Consensus 559 ~~~~~~~-~~~~~~~~A~~----~~~~~l~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~la~~~~ 628 (766)
.+..... ..+...+.-.. .....+. ....+.+.+.+.+..+.-+.+.+.....-...+.... ........
T Consensus 273 ~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~ 352 (652)
T KOG2376|consen 273 KDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKV 352 (652)
T ss_pred cccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHH
Confidence 1111111 00000000000 0001111 2356677777777777777666554433222222111 11222222
Q ss_pred HhccHHHHHHHHHHHHHhccCCH-HHHHHHh----hhcCHHHHHHHHHHHH--------hcCCCCchhHHHHHHHHHhCC
Q 004243 629 LKNELKAAYDEMTKLLEKAQYSA-SAFEKRS----EYSDREMAKNDLNMAT--------QLDPLRTYPYRYRAAVLMDDQ 695 (766)
Q Consensus 629 ~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~----~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g 695 (766)
+...+..|...+....+.+|.+. .+...++ ..|+++.|+..+.... +. ...|.+-..+-..+...+
T Consensus 353 ~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 353 REKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPGTVGAIVALYYKIK 431 (652)
T ss_pred HHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChhHHHHHHHHHHhcc
Confidence 33367888888888888888873 3333333 5689999999888332 21 123444445555677777
Q ss_pred CHHHHHHHHHHHHhc----CCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 004243 696 KEVEAVEELSKAIAF----KPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 696 ~~~~A~~~~~~al~~----~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 760 (766)
+-+-|...+..++.. .+... .+...+.+..+.|+.++|...+++.++.+|++.++...+--+...
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 766677776666543 12222 222567777888999999999999999999999887766544433
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.64 E-value=5.7e-14 Score=125.89 Aligned_cols=202 Identities=15% Similarity=0.060 Sum_probs=177.8
Q ss_pred hhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHH-HHHHHHHHHh
Q 004243 321 TGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC-LELRAWLFIA 397 (766)
Q Consensus 321 ~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~ 397 (766)
.+.+.+|..|+..|+. |...+++|++.||++..+|..+|.+|...|+.+.|.+.|++++.++|+... +.+.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 3556778888889996 999999999999999999999999999999999999999999999995554 5559999999
Q ss_pred hhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCCh
Q 004243 398 ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS 477 (766)
Q Consensus 398 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~ 477 (766)
+|++++|...|++++. +|.... ..+++..+|.+....|+.+.|..++ +++++.+|+.+
T Consensus 116 qg~~~eA~q~F~~Al~-~P~Y~~---~s~t~eN~G~Cal~~gq~~~A~~~l------------------~raL~~dp~~~ 173 (250)
T COG3063 116 QGRPEEAMQQFERALA-DPAYGE---PSDTLENLGLCALKAGQFDQAEEYL------------------KRALELDPQFP 173 (250)
T ss_pred CCChHHHHHHHHHHHh-CCCCCC---cchhhhhhHHHHhhcCCchhHHHHH------------------HHHHHhCcCCC
Confidence 9999999999999997 454442 2357888999999999999986444 99999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.....++..++..|+|..|...+++.....+-..+.+.....+-...|+-+.|-++=.+..+..|..
T Consensus 174 ~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 174 PALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999888888888888888889999999999988888888888876
No 92
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=5e-11 Score=117.49 Aligned_cols=388 Identities=12% Similarity=-0.002 Sum_probs=240.8
Q ss_pred hHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHH-HHHHHHHHhh
Q 004243 322 GWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCL-ELRAWLFIAA 398 (766)
Q Consensus 322 ~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~~~~~ 398 (766)
.|+..|.--..+++. |...|++|+..+..+...|...+.+-++..+...|...+++++.+-|..+.+ +-...+--.+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 344444333334443 8999999999999999999999999999999999999999999999965554 4366666778
Q ss_pred hhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChh
Q 004243 399 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 478 (766)
Q Consensus 399 g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~ 478 (766)
|+...|.+.|++-+...|+.. ++...-.........+.|. ..|++-+-..| ...
T Consensus 155 gNi~gaRqiferW~~w~P~eq-------aW~sfI~fElRykeieraR------------------~IYerfV~~HP-~v~ 208 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQ-------AWLSFIKFELRYKEIERAR------------------SIYERFVLVHP-KVS 208 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHH-------HHHHHHHHHHHhhHHHHHH------------------HHHHHHheecc-cHH
Confidence 999999999999999999876 5555555555555555553 34566666665 567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---hhHHHHHHHHHHCCCHHHHHHHHHHHHccccch--HHHHHHHHH
Q 004243 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYI 553 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~ 553 (766)
.|...+..-.+.|+..-|...|++|++...++. ..+...+..-..+..++.|...|+-++..-|.+ +-.+..-..
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 889999999999999999999999998766553 334455666667888999999999999988887 222211111
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhc-----hhhccc--c--chhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh-------
Q 004243 554 LADTNLDPESSTYVIQLLEEALRC-----PSDGLR--K--GQALNNLGSIYVECGKLDQAENCYINALDIKHT------- 617 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~-----~~~~l~--~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------- 617 (766)
.....-+.. -.++++-. |++.+. | -++|+..-.+-...|+.+.-.+.|++|+..-+|
T Consensus 289 fEKqfGd~~-------gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W 361 (677)
T KOG1915|consen 289 FEKQFGDKE-------GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYW 361 (677)
T ss_pred HHHHhcchh-------hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHH
Confidence 111111111 11222211 111111 1 255555555555566666666666666665332
Q ss_pred ----HHHHHHHHH-HHHhccHHHHHHHHHHHHHhccCC----HHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhH
Q 004243 618 ----RAHQGLARV-YYLKNELKAAYDEMTKLLEKAQYS----ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPY 684 (766)
Q Consensus 618 ----~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~ 684 (766)
..|.+.+.- -....+.+.+.+.|+.++.+-|.. +.+|...+ ...+...|...+-.|+..-|.+ ...
T Consensus 362 ~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlF 440 (677)
T KOG1915|consen 362 RRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLF 440 (677)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHH
Confidence 122222211 123445555666666666655543 22333333 2344555666666666555543 222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 685 RYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 685 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
...-.+-.+.++++.....|++-++..|.+ ..|...|.+-..+|+.+.|...|+-|+..
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 223334445555666666666666666655 44445555555566666666666655543
No 93
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.63 E-value=3.5e-14 Score=148.05 Aligned_cols=257 Identities=18% Similarity=0.138 Sum_probs=200.0
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccCC
Q 004243 347 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--------KLSVDCLEL-RAWLFIAADDYESALRDTLALLALESN 417 (766)
Q Consensus 347 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~ 417 (766)
.+|.-..+...+|..|..+|+|+.|...+++++++ .|.-..... +|.+|..++++.+|+..|++++.+.-.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666777888999999999999999999999987 333223333 899999999999999999999875322
Q ss_pred cccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHH
Q 004243 418 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 497 (766)
Q Consensus 418 ~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 497 (766)
.. | ..+|..+.++.++|.+|...|++++|.
T Consensus 274 ~~-------------------G-------------------------------~~h~~va~~l~nLa~ly~~~GKf~EA~ 303 (508)
T KOG1840|consen 274 VF-------------------G-------------------------------EDHPAVAATLNNLAVLYYKQGKFAEAE 303 (508)
T ss_pred hc-------------------C-------------------------------CCCHHHHHHHHHHHHHHhccCChHHHH
Confidence 21 1 112344567889999999999999999
Q ss_pred HHHHHHHhcC--------CCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHH
Q 004243 498 RCLRLARNHS--------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQ 569 (766)
Q Consensus 498 ~~~~~a~~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 569 (766)
.++++|+++. |.-+..+..++.++...+++++|..++++++++.-+. ..+...
T Consensus 304 ~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~--------------~g~~~~----- 364 (508)
T KOG1840|consen 304 EYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA--------------PGEDNV----- 364 (508)
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh--------------ccccch-----
Confidence 9999887652 2335567888999999999999999999998753211 000000
Q ss_pred HHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-------C---hHHHHHHHHHHHHhccHHHHHHH
Q 004243 570 LLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-------H---TRAHQGLARVYYLKNELKAAYDE 639 (766)
Q Consensus 570 ~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~---~~~~~~la~~~~~~g~~~~A~~~ 639 (766)
.-+..+.++|.+|..+|++++|.+.|++++.+. + ...+..+|..+.+.+++.+|...
T Consensus 365 -------------~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 365 -------------NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred -------------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 014668999999999999999999999999871 1 24788899999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHH-hcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004243 640 MTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMAT-QLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 640 ~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 709 (766)
|.++..+. +.. .-.|+....+.+||.+|..+|++++|+++.++++.
T Consensus 432 ~~~~~~i~------------------------~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 432 FEEAKDIM------------------------KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHH------------------------HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 98887652 122 23456678899999999999999999999999874
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=4.2e-11 Score=113.66 Aligned_cols=375 Identities=12% Similarity=-0.030 Sum_probs=214.9
Q ss_pred HHHHHHHHHhcCCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Q 004243 337 KIVDLNYASELDPTLS-FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 414 (766)
Q Consensus 337 A~~~~~~al~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 414 (766)
|+..++-....+.... ..-..+|.|++.+|+|++|+..|+-+...+. +.+.+..+|.+++-+|.|.+|...-.+
T Consensus 41 AislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k---- 116 (557)
T KOG3785|consen 41 AISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK---- 116 (557)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----
Confidence 7777776665554433 4566789999999999999999998876544 444455699999999999999876655
Q ss_pred cCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHH
Q 004243 415 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 494 (766)
Q Consensus 415 ~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 494 (766)
.|+++. ...++-.+....++-+ .+..+.+.++- ..+-...+|.+++..-.|.
T Consensus 117 a~k~pL------~~RLlfhlahklndEk-------------------~~~~fh~~LqD---~~EdqLSLAsvhYmR~HYQ 168 (557)
T KOG3785|consen 117 APKTPL------CIRLLFHLAHKLNDEK-------------------RILTFHSSLQD---TLEDQLSLASVHYMRMHYQ 168 (557)
T ss_pred CCCChH------HHHHHHHHHHHhCcHH-------------------HHHHHHHHHhh---hHHHHHhHHHHHHHHHHHH
Confidence 466662 2222222222222211 12233333332 1233456666666667788
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHH----
Q 004243 495 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQ---- 569 (766)
Q Consensus 495 ~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~---- 569 (766)
+|+..|.+.+..+|+....-.+++.+|+++.-++-+.+.+.--++..|+. -+...++..+.+.-...........
T Consensus 169 eAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN 248 (557)
T KOG3785|consen 169 EAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADN 248 (557)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc
Confidence 88888888888888877777888888888888888888888888888887 5555555554443322211111100
Q ss_pred ---HHHHHHhchhhc----------cc--c------chhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHH-
Q 004243 570 ---LLEEALRCPSDG----------LR--K------GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVY- 627 (766)
Q Consensus 570 ---~~~~A~~~~~~~----------l~--~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~- 627 (766)
.+..+...++.. ++ | +++..++..-|+.+++.++|+...+..- -..|.-+...|.+.
T Consensus 249 ~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~-PttP~EyilKgvv~a 327 (557)
T KOG3785|consen 249 IDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD-PTTPYEYILKGVVFA 327 (557)
T ss_pred ccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC-CCChHHHHHHHHHHH
Confidence 111111111111 11 1 5777788888888888888877654321 12223333334444
Q ss_pred ------------------------------------------HHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhc
Q 004243 628 ------------------------------------------YLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYS 661 (766)
Q Consensus 628 ------------------------------------------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~ 661 (766)
+...++++.+.+++..-....++....++++ ..|
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATG 407 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhc
Confidence 4444444444444444444333333333333 345
Q ss_pred CHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHcCCHHHHHHHHH
Q 004243 662 DREMAKNDLNMATQLDPLR-TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL--QMLHLRAAFYESIGDLTSAIRDSQ 738 (766)
Q Consensus 662 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~la~~~~~~g~~~~A~~~~~ 738 (766)
++.+|.+.|-+....+-.+ ......+|.+|...|+.+-|...+-+. -.|.. ..+..+|......+++--|.+.|.
T Consensus 408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6666666665544333222 222335666666666666665554321 12222 122245666666666666677777
Q ss_pred HHHccCCC
Q 004243 739 AALCLDPN 746 (766)
Q Consensus 739 ~al~~~p~ 746 (766)
..-.+||+
T Consensus 486 ~lE~lDP~ 493 (557)
T KOG3785|consen 486 ELEILDPT 493 (557)
T ss_pred HHHccCCC
Confidence 76666765
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=8.4e-11 Score=114.34 Aligned_cols=294 Identities=15% Similarity=0.024 Sum_probs=206.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHH
Q 004243 359 AVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH 437 (766)
Q Consensus 359 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~ 437 (766)
|..-+..|+|.+|.+...+.-+..+.|...++ -+...-+.|+++.|-.+..++-+..+++.
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~------------------ 152 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT------------------ 152 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch------------------
Confidence 44455566666666666666655555554444 45555566666666666666655533333
Q ss_pred HhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHH
Q 004243 438 VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE 517 (766)
Q Consensus 438 ~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 517 (766)
......++.++...|+++.|.....++.+..|.++.++...
T Consensus 153 ---------------------------------------l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa 193 (400)
T COG3071 153 ---------------------------------------LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA 193 (400)
T ss_pred ---------------------------------------HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence 23445677788888999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHH
Q 004243 518 GWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYV 596 (766)
Q Consensus 518 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~ 596 (766)
..+|...|++.+......+.-+..--. +-+. +++ ..++..+-.-..
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~---------------------~le------------~~a~~glL~q~~ 240 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAA---------------------RLE------------QQAWEGLLQQAR 240 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHccCCChHHHH---------------------HHH------------HHHHHHHHHHHh
Confidence 999999999999888887765532111 0000 000 011111111001
Q ss_pred HhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh--hhcCHHHHHHHHHH
Q 004243 597 ECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS--EYSDREMAKNDLNM 672 (766)
Q Consensus 597 ~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~--~~~~~~~A~~~~~~ 672 (766)
..+..+.=..++++.-.. +++..-..++.-+...|+.++|.+..++++...-+.. .....+ ..++...-++..++
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCCchHHHHHHHH
Confidence 111111112233332222 4577777888888889999999999998887755443 222222 56888888899999
Q ss_pred HHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 673 ATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 673 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
.++..|++|..+..+|..+++.+.|.+|..+|+.+++..|+...+..+|.++.++|+..+|.+.++.++.+
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999854
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=5.6e-11 Score=112.80 Aligned_cols=380 Identities=12% Similarity=0.051 Sum_probs=227.5
Q ss_pred HhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCcH--HHHHHHH
Q 004243 266 MFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGRE--KIVDLNY 343 (766)
Q Consensus 266 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--A~~~~~~ 343 (766)
++...+|..|+..++-....+.... ...-.+.+-+++..|++ |+..|+-
T Consensus 32 fls~rDytGAislLefk~~~~~EEE-----------------------------~~~~lWia~C~fhLgdY~~Al~~Y~~ 82 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEE-----------------------------DSLQLWIAHCYFHLGDYEEALNVYTF 82 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhh-----------------------------HHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3456789999988887664432211 11223455666666665 8888888
Q ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccc
Q 004243 344 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 423 (766)
Q Consensus 344 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 423 (766)
+...+.-+...+.++|-+++-+|.|.+|.....++- .+|....++-.+..+.|+-++-.. |..-+.-...+
T Consensus 83 ~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~---k~pL~~RLlfhlahklndEk~~~~-fh~~LqD~~Ed----- 153 (557)
T KOG3785|consen 83 LMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP---KTPLCIRLLFHLAHKLNDEKRILT-FHSSLQDTLED----- 153 (557)
T ss_pred HhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHhCcHHHHHH-HHHHHhhhHHH-----
Confidence 877776677888899999999999999988777662 244444444555555665444332 33333211111
Q ss_pred cchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004243 424 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 503 (766)
Q Consensus 424 ~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 503 (766)
...++.+......|.+| |..|.+++..+|+.......+|.+|.++.-|+-+.+.+.-.
T Consensus 154 ----qLSLAsvhYmR~HYQeA------------------IdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 154 ----QLSLASVHYMRMHYQEA------------------IDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred ----HHhHHHHHHHHHHHHHH------------------HHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 12234444444555555 56677888888887777778888888888888888888877
Q ss_pred HhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHH----------------------------Hccccch-----HHHHHH
Q 004243 504 RNHSSSEHERLVYEGWILYDTGHREEALSRAEKS----------------------------ISIERTF-----EAFFLK 550 (766)
Q Consensus 504 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------------------------l~~~p~~-----~~~~~~ 550 (766)
+...|+++.+...++..++++=+-..|..-.+.. ++.-|.. ++..++
T Consensus 212 L~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL 291 (557)
T KOG3785|consen 212 LRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNL 291 (557)
T ss_pred HHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhh
Confidence 8888888777777766665532211221111111 1111111 111111
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHhchhhccc--c------------------------------------------ch
Q 004243 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGLR--K------------------------------------------GQ 586 (766)
Q Consensus 551 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~------------------------------------------~~ 586 (766)
..-+.. .++.++|+...+..-. | ..
T Consensus 292 ~iYyL~-----------q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp 360 (557)
T KOG3785|consen 292 IIYYLN-----------QNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP 360 (557)
T ss_pred eeeecc-----------cccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc
Confidence 111111 1244444443332211 0 12
Q ss_pred hHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHH-HHh----h
Q 004243 587 ALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE-KRS----E 659 (766)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~-~~~----~ 659 (766)
....++..++...++++.+.++...-.. ++....+++|.++...|++.+|.+.|-+.-...-.+...|. .++ .
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR 440 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh
Confidence 2334455555555666666555544333 55567789999999999999999999887544423333222 222 4
Q ss_pred hcCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH
Q 004243 660 YSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 718 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 718 (766)
.++.+-|...+-+. ..|. .-..+..+|+...+.+++--|.+.|...-.++|+.+.|.
T Consensus 441 nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred cCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence 56777787776541 2232 244556778888899999999999998888899988876
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=9.1e-13 Score=129.25 Aligned_cols=200 Identities=14% Similarity=0.111 Sum_probs=147.7
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---hhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHH
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 547 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~ 547 (766)
.++..+..++.+|..+...|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..|+++++..|++ ..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~- 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA- 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-
Confidence 3456778889999999999999999999999999888775 577889999999999999999999999888876 10
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 004243 548 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVY 627 (766)
Q Consensus 548 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~ 627 (766)
..+++.+|.++... .+.++
T Consensus 107 -------------------------------------~~a~~~~g~~~~~~------------------------~~~~~ 125 (235)
T TIGR03302 107 -------------------------------------DYAYYLRGLSNYNQ------------------------IDRVD 125 (235)
T ss_pred -------------------------------------HHHHHHHHHHHHHh------------------------ccccc
Confidence 11344444444332 11123
Q ss_pred HHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004243 628 YLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 707 (766)
Q Consensus 628 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 707 (766)
...|++++|++.+++++..+|++...+..+...+.... ........+|..+...|++.+|+..++++
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~-------------~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN-------------RLAGKELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34477788888888888888887665433322111111 01223457889999999999999999999
Q ss_pred HhcCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 708 IAFKPDL----QMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 708 l~~~p~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 746 (766)
++..|+. ..++.+|.++..+|++++|..+++......|+
T Consensus 193 l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 193 VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9998764 46679999999999999999999888777664
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=3.7e-13 Score=119.20 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=98.6
Q ss_pred HHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 004243 638 DEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 713 (766)
Q Consensus 638 ~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 713 (766)
..++++++.+|++ +..+| ..|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3455555555543 11222 4466666667777777788888889999999999999999999999999999998
Q ss_pred h-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhh
Q 004243 714 L-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 714 ~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 762 (766)
+ ..++.+|.++...|++++|+..|++++++.|++++.+..++.++..++
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 8 556689999999999999999999999999999999999988887665
No 99
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.49 E-value=8.2e-13 Score=127.46 Aligned_cols=294 Identities=16% Similarity=0.121 Sum_probs=181.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHH
Q 004243 392 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI 471 (766)
Q Consensus 392 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~ 471 (766)
|.-+++.|++...+..|+.+++...++.... ..++..+|..|..+++|++|.++-. ++ + .+.+.+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tL--SAIYsQLGNAyfyL~DY~kAl~yH~-hD----------l-tlar~lg 89 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTL--SAIYSQLGNAYFYLKDYEKALKYHT-HD----------L-TLARLLG 89 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHH--HHHHHHhcchhhhHhhHHHHHhhhh-hh----------H-HHHHHhc
Confidence 4445555555555555555555544443211 1234445555555555555432210 00 0 1122222
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CchhhHHHHHHHHHHCCCH-------------HHHHH
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS------SEHERLVYEGWILYDTGHR-------------EEALS 532 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~lg~~~~~~g~~-------------~~A~~ 532 (766)
..-..+..--++|..+...|.|++|+.+..+-+.... ....+++++|.+|...|+. +++..
T Consensus 90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred chhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 2223344455778888888888888887766544321 1356788888888877752 22333
Q ss_pred HHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcc----------ccchhHHhhHHHHHHhCCHH
Q 004243 533 RAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL----------RKGQALNNLGSIYVECGKLD 602 (766)
Q Consensus 533 ~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l----------~~~~~~~~lg~~~~~~g~~~ 602 (766)
.++.++ +.|..-+ ..+.++-+||+.|+-+|+|+
T Consensus 170 al~~Av-------------------------------------~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~ 212 (639)
T KOG1130|consen 170 ALENAV-------------------------------------KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFD 212 (639)
T ss_pred HHHHHH-------------------------------------HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHH
Confidence 333333 2222221 13678999999999999999
Q ss_pred HHHHHHHHHHcc----C----ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHH
Q 004243 603 QAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMAT 674 (766)
Q Consensus 603 ~A~~~~~~al~~----~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al 674 (766)
+|+..-+.-+.+ + ...++.++|.++.-.|+++.|++.|+..+.+ |+
T Consensus 213 ~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L--------------------------Ai 266 (639)
T KOG1130|consen 213 QAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL--------------------------AI 266 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH--------------------------HH
Confidence 999988877766 1 2358999999999999999999999998755 22
Q ss_pred hcCCC--CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-
Q 004243 675 QLDPL--RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD-------LQMLHLRAAFYESIGDLTSAIRDSQAALCLD- 744 (766)
Q Consensus 675 ~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 744 (766)
++... .+...+.+|+.|.-..++++|+.++.+-+.+... -.++|.+|..+-..|..++|+...++.+++.
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 22211 1345567888888888999999998887766321 1456678888888999999888887776652
Q ss_pred ----CC-ChhHHHHHHHHHHhhh
Q 004243 745 ----PN-HMETLDLYNRARDQAS 762 (766)
Q Consensus 745 ----p~-~~~~~~~l~~~~~~~~ 762 (766)
|. ...+...+..+...+.
T Consensus 347 ev~D~sgelTar~Nlsdl~~~lG 369 (639)
T KOG1130|consen 347 EVNDTSGELTARDNLSDLILELG 369 (639)
T ss_pred HhCCcchhhhhhhhhHHHHHHhC
Confidence 22 2234455555554443
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.48 E-value=3.1e-11 Score=126.89 Aligned_cols=302 Identities=11% Similarity=0.015 Sum_probs=206.9
Q ss_pred CchhHHHHHHHHhccCcH--HHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH-HHHHHH
Q 004243 319 KPTGWMYQERSLYNLGRE--KIVDLNYASELDPTL---SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELRA 392 (766)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a 392 (766)
.+.++..++..+...++. |...+.++....|.+ ....+.+|..+...|++++|...++++++.+|+.. .+.. +
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-H 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-h
Confidence 345566666666555543 677888887777755 44577889999999999999999999999999544 3332 4
Q ss_pred HHHHhhhhHHHHHHHHHHHHh----ccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHH
Q 004243 393 WLFIAADDYESALRDTLALLA----LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 468 (766)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 468 (766)
..+...|++..+.....+++. .+|... .+...++.++...|++++|. ..+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~a~~~~~~G~~~~A~------------------~~~~~ 139 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYW------YLLGMLAFGLEEAGQYDRAE------------------EAARR 139 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcH------HHHHHHHHHHHHcCCHHHHH------------------HHHHH
Confidence 455555544444444444443 333333 35667888899999999985 45599
Q ss_pred HHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch----hhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 469 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH----ERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 469 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
+++.+|+++.++..+|.++...|++++|+..+++++...|..+ ..+..+|.++...|++++|+..+++++...|..
T Consensus 140 al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~ 219 (355)
T cd05804 140 ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES 219 (355)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC
Confidence 9999999999999999999999999999999999999877543 245679999999999999999999998776622
Q ss_pred --HHHH-HHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc-c--chhHHhhHHHHHHhCCHHHHHHHHHHHHccC---
Q 004243 545 --EAFF-LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR-K--GQALNNLGSIYVECGKLDQAENCYINALDIK--- 615 (766)
Q Consensus 545 --~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 615 (766)
.... ..+..+....... . .....+++.+......... + .......+.++...|+.++|...++......
T Consensus 220 ~~~~~~~~~~~~l~~~~~~g-~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~ 297 (355)
T cd05804 220 DPALDLLDAASLLWRLELAG-H-VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSA 297 (355)
T ss_pred ChHHHHhhHHHHHHHHHhcC-C-CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 1111 1111111111110 0 1112234333322211111 1 1222357788888999999999888776541
Q ss_pred --------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Q 004243 616 --------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (766)
Q Consensus 616 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 647 (766)
........+.++...|++++|.+.+..++...
T Consensus 298 ~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 298 DDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 12456778888899999999999999998764
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.48 E-value=2.6e-12 Score=125.99 Aligned_cols=184 Identities=14% Similarity=0.005 Sum_probs=146.7
Q ss_pred CCchhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH----HH
Q 004243 318 HKPTGWMYQERSLYNLGRE--KIVDLNYASELDPTLS---FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD----CL 388 (766)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----~~ 388 (766)
..+..++..|..++..+++ |+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3456788888888888886 9999999999999876 5789999999999999999999999999998433 35
Q ss_pred HHHHHHHHhh--------hhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCcc
Q 004243 389 ELRAWLFIAA--------DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 460 (766)
Q Consensus 389 ~~~a~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 460 (766)
+.+|.++... |++++|++.|++++..+|++.. +...+..+....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~a~~~~~~~~---------------------- 162 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY------APDAKKRMDYLR---------------------- 162 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh------HHHHHHHHHHHH----------------------
Confidence 6689998876 8999999999999999999873 111111111100
Q ss_pred ccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHH
Q 004243 461 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKS 537 (766)
Q Consensus 461 ~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (766)
. ........+|..+...|++.+|+..++++++..|+. +.+++.+|.++...|++++|..+++..
T Consensus 163 -------~------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 163 -------N------RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred -------H------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0 011224578889999999999999999999997764 589999999999999999999998887
Q ss_pred Hcccc
Q 004243 538 ISIER 542 (766)
Q Consensus 538 l~~~p 542 (766)
....|
T Consensus 230 ~~~~~ 234 (235)
T TIGR03302 230 GANYP 234 (235)
T ss_pred HhhCC
Confidence 76554
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=1.5e-10 Score=122.92 Aligned_cols=269 Identities=19% Similarity=0.118 Sum_probs=203.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 554 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l 554 (766)
+.+..+....++...|++++|++.++.....-.+.....-..|.++.++|++++|...|...++.+|++ ..+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 356677888889999999999999998888878888888999999999999999999999999999999 7777777776
Q ss_pred HhcC-CCCCChHHHHHHHHHHHhchhhc---------------------------ccc--chhHHhhHHHHHHhCCHHHH
Q 004243 555 ADTN-LDPESSTYVIQLLEEALRCPSDG---------------------------LRK--GQALNNLGSIYVECGKLDQA 604 (766)
Q Consensus 555 ~~~~-~~~~~~~~~~~~~~~A~~~~~~~---------------------------l~~--~~~~~~lg~~~~~~g~~~~A 604 (766)
.... ...........-+++-...|.++ +.+ +..+.++-.+|....+..-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 4332 22233333344444444333322 111 35555565555544443333
Q ss_pred HHHHHHHHcc---------------CCh----HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhc
Q 004243 605 ENCYINALDI---------------KHT----RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYS 661 (766)
Q Consensus 605 ~~~~~~al~~---------------~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~ 661 (766)
...+...... .+| .+++.+|..|...|++++|+++.+++|+..|..++.|...| ..|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 3333332211 112 25688899999999999999999999999999999999999 679
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCh------HHHH--HHHHHHHHcCCHH
Q 004243 662 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK--PDL------QMLH--LRAAFYESIGDLT 731 (766)
Q Consensus 662 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~------~~~~--~la~~~~~~g~~~ 731 (766)
++.+|...++.+-.+|+.+-.+....+..+++.|+.++|.+.+..-...+ |.. -.|+ --|.+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999987765543 221 1455 4599999999999
Q ss_pred HHHHHHHHHHccC
Q 004243 732 SAIRDSQAALCLD 744 (766)
Q Consensus 732 ~A~~~~~~al~~~ 744 (766)
.|++.|..+.+..
T Consensus 323 ~ALk~~~~v~k~f 335 (517)
T PF12569_consen 323 LALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=2.6e-12 Score=113.84 Aligned_cols=123 Identities=8% Similarity=0.036 Sum_probs=99.9
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccc
Q 004243 464 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (766)
Q Consensus 464 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (766)
..++++++.+|++ +..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4578888888875 5678889999999999999999999999999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHH
Q 004243 544 FEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQ 621 (766)
Q Consensus 544 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 621 (766)
+ +.+++++|.++...|++++|+..|+++++.. ++..+.
T Consensus 91 ~----------------------------------------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 91 H----------------------------------------PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred C----------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 7 6667777777777888888888888877773 445666
Q ss_pred HHHHHHHH
Q 004243 622 GLARVYYL 629 (766)
Q Consensus 622 ~la~~~~~ 629 (766)
++|.+...
T Consensus 131 ~~~~~~~~ 138 (144)
T PRK15359 131 IRQNAQIM 138 (144)
T ss_pred HHHHHHHH
Confidence 66665443
No 104
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=9.1e-10 Score=116.96 Aligned_cols=277 Identities=14% Similarity=0.003 Sum_probs=189.7
Q ss_pred hhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHh
Q 004243 321 TGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIA 397 (766)
Q Consensus 321 ~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~ 397 (766)
+..++...++...|++ |+..+++....-++....+-.+|.++..+|++++|...|...+..+|+...++. +..+...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 4456667777777775 999999888888888899999999999999999999999999999997777665 5555522
Q ss_pred h-----hhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhh---------hhhcc-cCcccc
Q 004243 398 A-----DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY---------DRWSS-VDDIGS 462 (766)
Q Consensus 398 ~-----g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~---------~~~~~-~~~~~~ 462 (766)
. .+.+.-...|+......|........ .....-|.-. -..+..++... ..... ..+...
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl-~L~~~~g~~F-----~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRL-PLDFLEGDEF-----KERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK 158 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHh-hcccCCHHHH-----HHHHHHHHHHHHhcCCchHHHHHHHHHcChhH
Confidence 2 35667778888887777765531100 0000001000 00111111110 00000 001111
Q ss_pred -------HHHHHHHHHc------------CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q 004243 463 -------LAVINQMLIN------------DPGK--SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 521 (766)
Q Consensus 463 -------l~~~~~al~~------------~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~ 521 (766)
+..+...++. .|.. .++++.+|..|-..|++++|++.++++++..|+.++.+...|.++
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Karil 238 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 1112222211 1122 246688999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc-----------chhH-
Q 004243 522 YDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK-----------GQAL- 588 (766)
Q Consensus 522 ~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----------~~~~- 588 (766)
...|++.+|.+.++.+-.+++.+ -.-...+..+.+.+ +.++|.+.+.....+ ...|
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~-----------~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf 307 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG-----------RIEEAEKTASLFTREDVDPLSNLNDMQCMWF 307 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC-----------CHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence 99999999999999999999998 44444445555665 777887766555432 1233
Q ss_pred -HhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 589 -NNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 589 -~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
...|.+|.+.|++..|+..|..+.+.
T Consensus 308 ~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 308 ETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45699999999999999999988876
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.43 E-value=1.3e-11 Score=115.50 Aligned_cols=159 Identities=18% Similarity=0.111 Sum_probs=130.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHH
Q 004243 592 GSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAK 667 (766)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~ 667 (766)
+..|+..|+++......++...... .+...++.++++..++++++.+|++...|..+| ..|++++|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4568888998887655533222110 111366778999999999999999999999999 569999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHH-HhCCC--HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 668 NDLNMATQLDPLRTYPYRYRAAVL-MDDQK--EVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 668 ~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
..|+++++++|+++.++..+|.++ ...|+ +++|...++++++.+|++ ..++++|..+...|++++|+..|++++++
T Consensus 94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999975 67777 599999999999999999 55669999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHH
Q 004243 744 DPNHMETLDLYNRARD 759 (766)
Q Consensus 744 ~p~~~~~~~~l~~~~~ 759 (766)
+|.+.+-...+..++.
T Consensus 174 ~~~~~~r~~~i~~i~~ 189 (198)
T PRK10370 174 NSPRVNRTQLVESINM 189 (198)
T ss_pred CCCCccHHHHHHHHHH
Confidence 9887665555544443
No 106
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=1.9e-08 Score=103.43 Aligned_cols=294 Identities=13% Similarity=0.031 Sum_probs=192.8
Q ss_pred HHHHHHcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CchhhHHHH-----HHHHHHCC-----------
Q 004243 466 INQMLINDPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS---SEHERLVYE-----GWILYDTG----------- 525 (766)
Q Consensus 466 ~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~l-----g~~~~~~g----------- 525 (766)
+...+...|+. ...|..+|..|.+.|.+++|...|+++++.-- +...++... ..+...++
T Consensus 236 iR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed 315 (835)
T KOG2047|consen 236 IRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEED 315 (835)
T ss_pred HHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhh
Confidence 34444444543 46799999999999999999999999887532 222222111 11111111
Q ss_pred --CHHHHHHHHHHHHccccch-HH------HHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc---cchhHHhhHH
Q 004243 526 --HREEALSRAEKSISIERTF-EA------FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGS 593 (766)
Q Consensus 526 --~~~~A~~~~~~al~~~p~~-~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~lg~ 593 (766)
+.+-....|+..+...|-. .. ..+....+....+..++....+.-+.+|+...+-... +...|...|.
T Consensus 316 ~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 316 DVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred hhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHH
Confidence 2334455566555443322 00 0011122222233334444445555666554433322 3589999999
Q ss_pred HHHHhCCHHHHHHHHHHHHccCC------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCH----------------
Q 004243 594 IYVECGKLDQAENCYINALDIKH------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA---------------- 651 (766)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------- 651 (766)
.|...|+.+.|...|+++++... ..+|..-|..-....+++.|.+.++++... |..+
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHH
Confidence 99999999999999999999842 358899999999999999999999998743 2221
Q ss_pred ---HHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---HHHH-HH
Q 004243 652 ---SAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL---QMLH-LR 720 (766)
Q Consensus 652 ---~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~-~l 720 (766)
.+|...+ .+|-++.-...|++.+.+.--.|..-.+.|..+....-+++|.+.|++.+.+.|-. ..|. .+
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 1222222 35777888889999999888889999999999999999999999999999985433 3343 22
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHccCCCC--hhHHHHHHHHHHh
Q 004243 721 --AAFYESIGDLTSAIRDSQAALCLDPNH--METLDLYNRARDQ 760 (766)
Q Consensus 721 --a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~ 760 (766)
...-...-..+.|...|++||+..|.. ...+-+++++++.
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 222333447899999999999998832 1234445555543
No 107
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.7e-09 Score=110.21 Aligned_cols=354 Identities=17% Similarity=0.121 Sum_probs=211.3
Q ss_pred HhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHH
Q 004243 330 LYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRD 407 (766)
Q Consensus 330 ~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 407 (766)
+...+++ |++..++.+...|++..+....-.++.+.++|++|+...+.-..........+..|.|.++++..++|+..
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 3345554 99999999999999999999999999999999999966655432222222234589999999999999999
Q ss_pred HHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHH
Q 004243 408 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 487 (766)
Q Consensus 408 ~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~ 487 (766)
++ ..++.+. .++.+.+.+....++|++| +..|+..++.+.++.+.-......-
T Consensus 102 ~~---~~~~~~~------~ll~L~AQvlYrl~~ydea------------------ldiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 102 LK---GLDRLDD------KLLELRAQVLYRLERYDEA------------------LDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred Hh---cccccch------HHHHHHHHHHHHHhhHHHH------------------HHHHHHHHhcCCchHHHHHHHHHHH
Confidence 98 3445554 2677888888889999988 4556667666655554433322221
Q ss_pred HhcCCHHHHHHH-HHHHHhcCCC-chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChH
Q 004243 488 LRLNCQKAAMRC-LRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESST 565 (766)
Q Consensus 488 ~~~g~~~~A~~~-~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~ 565 (766)
.. .+... ..+.+...|. ..+.+++.+.++...|+|.+|++.+++++++.... +..++..
T Consensus 155 ~~-----a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~--------------l~~~d~~ 215 (652)
T KOG2376|consen 155 VA-----AALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK--------------LEDEDTN 215 (652)
T ss_pred HH-----HhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh--------------hcccccc
Confidence 11 11111 2333444454 56788999999999999999999999996543211 0000000
Q ss_pred HHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh----------------------------
Q 004243 566 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT---------------------------- 617 (766)
Q Consensus 566 ~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------------------- 617 (766)
-..+++-+ ..+...++.++..+|+..+|...|...++.+++
T Consensus 216 --eEeie~el---------~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~ 284 (652)
T KOG2376|consen 216 --EEEIEEEL---------NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLK 284 (652)
T ss_pred --hhhHHHHH---------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHH
Confidence 00000000 234555666666666666666666666554222
Q ss_pred -----------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHH-HHHHHh---hhcCHHHHHHHH
Q 004243 618 -----------------------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS-AFEKRS---EYSDREMAKNDL 670 (766)
Q Consensus 618 -----------------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~---~~~~~~~A~~~~ 670 (766)
..+.+.+...+..+..+.+.+...+.-...|.... +..... ....+.+|...+
T Consensus 285 ~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L 364 (652)
T KOG2376|consen 285 SKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELL 364 (652)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 12233333333333333333322222222222211 111111 112467788888
Q ss_pred HHHHhcCCCC-chhHHHHHHHHHhCCCHHHHHHHHH--------HHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 671 NMATQLDPLR-TYPYRYRAAVLMDDQKEVEAVEELS--------KAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 671 ~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (766)
....+..|.. ..+...++.+.+.+|+++.|++.+. ...+..-.....-.+-..+.+.++.+.|...+..|
T Consensus 365 ~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 365 LQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 8888888877 6678888889999999999999988 33333322222223444455555544444444333
No 108
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=1.9e-12 Score=121.41 Aligned_cols=107 Identities=22% Similarity=0.261 Sum_probs=97.2
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCCHHHHHHHH
Q 004243 659 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDS 737 (766)
Q Consensus 659 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~ 737 (766)
..++|.+|+..|.+||+++|.++..|.++|.+|.++|.++.|++.++.++.++|... .|-.+|.+|..+|++++|++.|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 346778888888888889999999999999999999999999999999999999994 5558999999999999999999
Q ss_pred HHHHccCCCChhHHHHHHHHHHhhhhhc
Q 004243 738 QAALCLDPNHMETLDLYNRARDQASHQQ 765 (766)
Q Consensus 738 ~~al~~~p~~~~~~~~l~~~~~~~~~~~ 765 (766)
+++|+++|+++..+..|..++..+++++
T Consensus 173 kKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 173 KKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999888765
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.40 E-value=1.1e-10 Score=129.21 Aligned_cols=282 Identities=10% Similarity=0.027 Sum_probs=190.8
Q ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccccccc
Q 004243 346 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 424 (766)
Q Consensus 346 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 424 (766)
..+|.+..++..++..+...|++++|+..++.+++..|+.. .++..|.++.+.+++.+|.-. .++...+.+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~---- 98 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK---- 98 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc----
Confidence 45789999999999999999999999999999999999554 455599999999998888877 77776666552
Q ss_pred chhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004243 425 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 504 (766)
Q Consensus 425 ~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 504 (766)
+ .+ +..+...+...|.+..+++.+|.+|-++|++++|...|++++
T Consensus 99 ----------------~-~~------------------ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 99 ----------------W-AI------------------VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred ----------------h-hH------------------HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1 11 333445555567777899999999999999999999999999
Q ss_pred hcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc
Q 004243 505 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 584 (766)
Q Consensus 505 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 584 (766)
+.+|+++.++.++|..|... +.++|++++.+|+..
T Consensus 144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------------------------------------- 178 (906)
T PRK14720 144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------------------------------------- 178 (906)
T ss_pred hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------------------------------------
Confidence 99999999999999999999 999999999999862
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh--HHHHHH-HHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhc
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGL-ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYS 661 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~l-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 661 (766)
+...+++.++.+.+.+.+..++. +.+..+ -.+....| +..+...+.-. |...-...
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~~l----------~~~y~~~~ 237 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-FTRLVGLLEDL----------YEPYKALE 237 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-cchhHHHHHHH----------HHHHhhhh
Confidence 34455677777777777776433 222211 11211222 22222222222 22222345
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 662 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 662 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
++++++..++.+++.+|.+..+...++.+|. ++|.. -..++..+++ ..+--.-.++..|+..|++.+
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~----------s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM----------SDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred hhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHH----------hccccCCccHHHHHHHHHHHe
Confidence 5667777777777777777777777776665 23222 2222322221 111111134566666677766
Q ss_pred ccCCCC
Q 004243 742 CLDPNH 747 (766)
Q Consensus 742 ~~~p~~ 747 (766)
..+|++
T Consensus 305 ~f~~G~ 310 (906)
T PRK14720 305 VFDTGN 310 (906)
T ss_pred eecCCC
Confidence 666654
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.2e-10 Score=106.40 Aligned_cols=277 Identities=14% Similarity=0.084 Sum_probs=183.0
Q ss_pred hccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHHHHHH
Q 004243 331 YNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESALRD 407 (766)
Q Consensus 331 ~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~A~~~ 407 (766)
+...++ ||+++..-.+..|.+-.++..+|.||+...+|..|-.+|++.-.+.|....+.. .+..+++.+.+..|++.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 334444 899999899999999999999999999999999999999999999997777777 89999999999999988
Q ss_pred HHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCC--CChhHHHHHHH
Q 004243 408 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP--GKSFLRFRQSL 485 (766)
Q Consensus 408 ~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p--~~~~~~~~la~ 485 (766)
...+... |+-.. +.+.+-+.+....+++..+ +..++.-| +++....+.|-
T Consensus 101 ~~~~~D~-~~L~~-----~~lqLqaAIkYse~Dl~g~----------------------rsLveQlp~en~Ad~~in~gC 152 (459)
T KOG4340|consen 101 AFLLLDN-PALHS-----RVLQLQAAIKYSEGDLPGS----------------------RSLVEQLPSENEADGQINLGC 152 (459)
T ss_pred HHHhcCC-HHHHH-----HHHHHHHHHhcccccCcch----------------------HHHHHhccCCCccchhccchh
Confidence 7765432 21111 1223333333333333322 33444445 56778889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcc----ccchHHHHHHHHHHHhcCCCC
Q 004243 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI----ERTFEAFFLKAYILADTNLDP 561 (766)
Q Consensus 486 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~l~~~~~~~ 561 (766)
+.++.|++++|++-|+.+++...-++-.-++++.++++.|+++.|+++..+.++. .|.. +.....-+.+.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl------gIGm~tegiDv 226 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL------GIGMTTEGIDV 226 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc------CccceeccCch
Confidence 9999999999999999999999999999999999999999999999988777654 3432 00000001110
Q ss_pred CChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CChHHHHHHHHHHHHhccHHHHH
Q 004243 562 ESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLKNELKAAY 637 (766)
Q Consensus 562 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~la~~~~~~g~~~~A~ 637 (766)
..+...+...+.|+ .++++..+.++.+.|+++.|.+.+...--. -+|..+.+++.. -..+++.+..
T Consensus 227 rsvgNt~~lh~Sal---------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~ 296 (459)
T KOG4340|consen 227 RSVGNTLVLHQSAL---------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGF 296 (459)
T ss_pred hcccchHHHHHHHH---------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccH
Confidence 00000011111111 355666777777888888777766543322 133344454443 2233344444
Q ss_pred HHHHHHHHhccCCH
Q 004243 638 DEMTKLLEKAQYSA 651 (766)
Q Consensus 638 ~~~~~~l~~~p~~~ 651 (766)
+-+.=.++++|-..
T Consensus 297 ~KLqFLL~~nPfP~ 310 (459)
T KOG4340|consen 297 EKLQFLLQQNPFPP 310 (459)
T ss_pred HHHHHHHhcCCCCh
Confidence 44444555555333
No 111
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.37 E-value=2e-11 Score=118.06 Aligned_cols=281 Identities=15% Similarity=0.048 Sum_probs=171.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCHH-----HHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhH
Q 004243 359 AVAKMEEGQIRAAISEIDRIIVFKLSVD-----CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 433 (766)
Q Consensus 359 a~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~ 433 (766)
|.-+.+.|+.+..+..|+.+++...... .|..+|..|+.+++|++|+++-..=+.+...-....+.+.+...+|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 5556677777777777777775544211 12236667777777777776554433322211112233345556777
Q ss_pred HHHHHhhhchHhhHHH-hhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCC--------------------
Q 004243 434 LNHHVRSWSPADCWIK-LYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC-------------------- 492 (766)
Q Consensus 434 ~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~-------------------- 492 (766)
.....|.|++|...-. ..+ +.+-+.-.-....+++++|.+|...|+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd-------------~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~a 170 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLD-------------FARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSA 170 (639)
T ss_pred hhhhhcccchHHHHHHHHhH-------------HHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHH
Confidence 7777777777752220 000 011111112234567777777776554
Q ss_pred HHHHHHHHHHHHhcCCC------chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHH
Q 004243 493 QKAAMRCLRLARNHSSS------EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTY 566 (766)
Q Consensus 493 ~~~A~~~~~~a~~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~ 566 (766)
++.|.+.|..-+++... ...++-++|..|+-+|+|+.|+..-+.-+.+...+ |
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-------------G-------- 229 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-------------G-------- 229 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-------------h--------
Confidence 23344444433333211 23466778888999999999998888777654333 0
Q ss_pred HHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----C----ChHHHHHHHHHHHHhccHHHHHH
Q 004243 567 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYD 638 (766)
Q Consensus 567 ~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~----~~~~~~~la~~~~~~g~~~~A~~ 638 (766)
++|.+ -.++.++|+++.-.|+++.|+++|++.+.+ + .....+.+|..|....++++|+.
T Consensus 230 -----DrAae--------RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~ 296 (639)
T KOG1130|consen 230 -----DRAAE--------RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAIT 296 (639)
T ss_pred -----hHHHH--------HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 11111 367899999999999999999999987765 2 34578999999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 004243 639 EMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 710 (766)
Q Consensus 639 ~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 710 (766)
++.+-+.+...-.+ --....+++.+|..+-..|..++|+.+.++.+++
T Consensus 297 Yh~rHLaIAqeL~D------------------------riGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 297 YHQRHLAIAQELED------------------------RIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHH------------------------hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99988766321111 0112455666677777777777777666665543
No 112
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=3.2e-07 Score=94.66 Aligned_cols=425 Identities=12% Similarity=-0.003 Sum_probs=252.2
Q ss_pred HHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccH-hHHHHHHHHhccHHHHHHHHhhhccCCC----chhHHHHHH
Q 004243 254 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL-AGLARAKYKVGQQYSAYKLINSIISEHK----PTGWMYQER 328 (766)
Q Consensus 254 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~l~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~ 328 (766)
+....+..|+..|.+.|.+++|...|++++..--.... ..+...|....+...+...-.......+ ...-...+.
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 55677889999999999999999999999986322221 1233334333331111110000000000 000001111
Q ss_pred --HHhccCcHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHc-cCC-----CHHHHHH-HHHHHHhhh
Q 004243 329 --SLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV-FKL-----SVDCLEL-RAWLFIAAD 399 (766)
Q Consensus 329 --~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~~-----~~~~~~~-~a~~~~~~g 399 (766)
.+...+.. -.=.-++..+|++...|..+..++ .|+..+-+..|..+++ .+| ++..+.. .|..|...|
T Consensus 326 ~e~lm~rr~~--~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 326 FESLMNRRPL--LLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHhccch--HHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence 11111111 111124567889998888876654 5778888888888764 455 3444444 899999999
Q ss_pred hHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHH---HcCCCC
Q 004243 400 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML---INDPGK 476 (766)
Q Consensus 400 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al---~~~p~~ 476 (766)
+.+.|...|+++.+..-.... ..+.++..-+.......+++.|...++.... +..-..+..|.... ..--..
T Consensus 402 ~l~~aRvifeka~~V~y~~v~--dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVE--DLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred cHHHHHHHHHHhhcCCccchH--HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchhhhhhcCCCcHHHHHHHh
Confidence 999999999999875433221 1134666667666676777777644421110 00000001111000 000123
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcccc--ch-HHHHHHHHH
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER--TF-EAFFLKAYI 553 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~-~~~~~~~~~ 553 (766)
...|...+......|-++.....|++.+++.--.|....+.|..+....-+++|.+.|++.+.+.| .- +.|..-..-
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 457888888888999999999999999999888899999999999999999999999999999864 33 555543332
Q ss_pred HH-hcCCCCCChHHHHHHHHHHHhchhhccc--cc----hhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 004243 554 LA-DTNLDPESSTYVIQLLEEALRCPSDGLR--KG----QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARV 626 (766)
Q Consensus 554 l~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~ 626 (766)
.. +.| .. .++.|..+|++++. |+ ..+...+..-.+-|--..|+..|++|...-+..-.+.+=++
T Consensus 557 fi~ryg--g~-------klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni 627 (835)
T KOG2047|consen 557 FIKRYG--GT-------KLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNI 627 (835)
T ss_pred HHHHhc--CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22 221 11 56666666666665 32 34444455555667788888888887766444333333333
Q ss_pred HHHhcc----HHHHHHHHHHHHHhccCCHH--HHHHHh----hhcCHHHHHHHHHHHHhc-CCC-CchhHHHHHHHHHhC
Q 004243 627 YYLKNE----LKAAYDEMTKLLEKAQYSAS--AFEKRS----EYSDREMAKNDLNMATQL-DPL-RTYPYRYRAAVLMDD 694 (766)
Q Consensus 627 ~~~~g~----~~~A~~~~~~~l~~~p~~~~--~~~~~~----~~~~~~~A~~~~~~al~~-~p~-~~~~~~~la~~~~~~ 694 (766)
|...-. .......|+++++.-|+.-. .....+ .+|..+.|...|.-+-++ +|. ++..|..--..-.+.
T Consensus 628 ~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH 707 (835)
T KOG2047|consen 628 YIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH 707 (835)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc
Confidence 322111 12335677888877776543 222222 467778888888777665 343 355566666666677
Q ss_pred CC
Q 004243 695 QK 696 (766)
Q Consensus 695 g~ 696 (766)
|+
T Consensus 708 Gn 709 (835)
T KOG2047|consen 708 GN 709 (835)
T ss_pred CC
Confidence 77
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.33 E-value=4.5e-11 Score=111.88 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=102.0
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHH-HHCCC--HHHHHHHHHHHHc
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL-YDTGH--REEALSRAEKSIS 539 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~ 539 (766)
+..+.++++.+|+++..|..+|.+|...|++++|+..|+++++.+|+++.++..+|.++ ...|+ +++|.+.++++++
T Consensus 59 i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 59 LQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999975 67777 5999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh
Q 004243 540 IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT 617 (766)
Q Consensus 540 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 617 (766)
.+|++ ..++..+|..+...|++++|+..|+++++..++
T Consensus 139 ~dP~~----------------------------------------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 139 LDANE----------------------------------------VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred hCCCC----------------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99987 567788888888889999999999998888554
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.32 E-value=3.5e-11 Score=106.52 Aligned_cols=123 Identities=18% Similarity=0.136 Sum_probs=102.8
Q ss_pred HHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 639 EMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 639 ~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
.++++++.+|++......++ ..|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666666776666655555 35677777777777778888889999999999999999999999999999999988
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q 004243 715 -QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 761 (766)
Q Consensus 715 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 761 (766)
..++.+|.++...|++++|+..|+++++++|++........++...+
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 55668999999999999999999999999999998887777776654
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=4.2e-10 Score=102.57 Aligned_cols=169 Identities=17% Similarity=0.103 Sum_probs=148.3
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----h
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----E 659 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~ 659 (766)
..+-....+.+..|+.+.|..++++.-.. ++..+....|..+...|++++|+++|+..++.+|.+...+...- .
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 34556667778899999999999987665 56677778899999999999999999999999999988876554 5
Q ss_pred hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcC---CHHHHHH
Q 004243 660 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIG---DLTSAIR 735 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g---~~~~A~~ 735 (766)
.|+.-+|++.+...++..+.+.++|..++.+|...|++++|.-++++.+=++|-++.++ .+|.+++-+| ++.-|.+
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999988 6788888765 6789999
Q ss_pred HHHHHHccCCCChhHHHHH
Q 004243 736 DSQAALCLDPNHMETLDLY 754 (766)
Q Consensus 736 ~~~~al~~~p~~~~~~~~l 754 (766)
+|.++++++|.+..++.++
T Consensus 213 yy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHhChHhHHHHHHH
Confidence 9999999999777765544
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=1.4e-10 Score=120.86 Aligned_cols=218 Identities=17% Similarity=0.151 Sum_probs=130.5
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHH
Q 004243 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 553 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 553 (766)
|.....-..++..+...|-...|+..+++ ...|-....+|...|+..+|.....+-++.+|+...|..+|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 44455667899999999999999999987 5567788899999999999999999999855554444444433
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccH
Q 004243 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNEL 633 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~ 633 (766)
..+.. -+++|.++.+..- ..+...+|......+++
T Consensus 467 ~~d~s-----------~yEkawElsn~~s----------------------------------arA~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 467 LHDPS-----------LYEKAWELSNYIS----------------------------------ARAQRSLALLILSNKDF 501 (777)
T ss_pred ccChH-----------HHHHHHHHhhhhh----------------------------------HHHHHhhccccccchhH
Confidence 32222 3333333322221 22333444444444555
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004243 634 KAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 634 ~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 709 (766)
.++.+.++..++++|-....|+.+| ..++...|..+|..++.++|++..+|.+++..|...|+..+|...+++|++
T Consensus 502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 502 SEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 5555555555555555555555554 344555555555555555555666666666666666666666666666666
Q ss_pred cCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 710 FKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 710 ~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (766)
.+-++ ..|.+.-.+....|.+++|++.|.+.+.+.
T Consensus 582 cn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 582 CNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred cCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 55444 333355555555666666666666655543
No 117
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=6.2e-09 Score=101.58 Aligned_cols=289 Identities=15% Similarity=0.056 Sum_probs=183.1
Q ss_pred cCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHH--HHHHHHHHHhhhhHHHHHHHH
Q 004243 333 LGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC--LELRAWLFIAADDYESALRDT 408 (766)
Q Consensus 333 ~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~~g~~~~A~~~~ 408 (766)
.|++ |.+...++-+..+.-..++..-+.+.-++|+++.|-.++.++-+..+++.. ...++.+....|+++.|....
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5564 777777777777777777778888888888888888888888887544333 334888888888888888888
Q ss_pred HHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHH
Q 004243 409 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL 488 (766)
Q Consensus 409 ~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~ 488 (766)
.++++..|.++ .++.+...+|...|.|......+....+-+...+.+... +++ .++..+-.-..
T Consensus 177 ~~ll~~~pr~~------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-le~---------~a~~glL~q~~ 240 (400)
T COG3071 177 DQLLEMTPRHP------EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-LEQ---------QAWEGLLQQAR 240 (400)
T ss_pred HHHHHhCcCCh------HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-HHH---------HHHHHHHHHHh
Confidence 88888888888 477888888888888887764443322222111111100 000 01111000001
Q ss_pred hcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHH
Q 004243 489 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVI 568 (766)
Q Consensus 489 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 568 (766)
.-+..+.=...++..-..-..++.....++.-+.+.|+.++|.+..+++++..-+.. +...+.. +.+++....+
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~--l~~~d~~~l~ 314 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPR--LRPGDPEPLI 314 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhh--cCCCCchHHH
Confidence 111111112233333333334566666677777777777777777777776544331 1111111 1222222222
Q ss_pred HHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004243 569 QLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (766)
Q Consensus 569 ~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 646 (766)
...++ ...+....+..+..+|.++.+.+.|.+|..+|+.+++.. ....+..+|.++.+.|+..+|.+.+++++..
T Consensus 315 k~~e~---~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 315 KAAEK---WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHH---HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 12222 222223346889999999999999999999999999994 5678999999999999999999999998743
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.29 E-value=1.1e-09 Score=121.52 Aligned_cols=219 Identities=10% Similarity=-0.050 Sum_probs=175.9
Q ss_pred HHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHH
Q 004243 470 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFL 549 (766)
Q Consensus 470 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 549 (766)
...+|.+..+|..++..+...|++++|+..++.+++..|+....++.+|.++.+.+++.+|... .++...+...-|
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-- 99 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-- 99 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch--
Confidence 3457899999999999999999999999999999999999999999999999999999998877 777766554111
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc----cchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHH
Q 004243 550 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGL 623 (766)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~l 623 (766)
.+++.+...+. ...+++.+|.+|-.+|++++|...|+++++.+ ++.+++++
T Consensus 100 -----------------------~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 100 -----------------------AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKL 156 (906)
T ss_pred -----------------------hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence 11111111111 13578999999999999999999999999994 67899999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchh--------------------
Q 004243 624 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYP-------------------- 683 (766)
Q Consensus 624 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------- 683 (766)
|..|... +.++|.+++.+++... ....++.++.....+.+..+|++...
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~~----------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYRF----------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHH----------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHH
Confidence 9999999 9999999999999762 22335567777777777777766333
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHH
Q 004243 684 YRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYES 726 (766)
Q Consensus 684 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~ 726 (766)
+.-+=..|...++|++++..++.+++.+|++ .+.+.++.+|..
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 2223367788899999999999999999988 667788888873
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.27 E-value=1.2e-10 Score=121.26 Aligned_cols=221 Identities=15% Similarity=0.071 Sum_probs=183.2
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhh
Q 004243 349 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 428 (766)
Q Consensus 349 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 428 (766)
|........+|..+...|=...|+..|++.-. +-....||...|+..+|.....+-++ .|+++ ..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem-------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~------~ly 460 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM-------WDPVILCYLLLGQHGKAEEINRQELE-KDPDP------RLY 460 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcc------hhH
Confidence 34455667889999999999999999998743 33368899999999999999999888 45555 378
Q ss_pred hHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004243 429 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 508 (766)
Q Consensus 429 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 508 (766)
..+|.+......|++|-++. +-.+..+...+|......++|+++.++++..++++|
T Consensus 461 c~LGDv~~d~s~yEkawEls------------------------n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELS------------------------NYISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred HHhhhhccChHHHHHHHHHh------------------------hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 88888888777777764322 112334566777777788999999999999999999
Q ss_pred CchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhH
Q 004243 509 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQAL 588 (766)
Q Consensus 509 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 588 (766)
-....|+.+|.+..+.++++.|.+.|..++.++|++ .++|
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~----------------------------------------~eaW 556 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN----------------------------------------AEAW 556 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc----------------------------------------hhhh
Confidence 999999999999999999999999999999999998 6778
Q ss_pred HhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Q 004243 589 NNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (766)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 647 (766)
++++.+|...|+-.+|...+.++++- ++...|.|.-.+....|.+++|++.+.+.+.+.
T Consensus 557 nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 557 NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88888888888888999999988887 466788888888889999999999988887654
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.26 E-value=6.3e-10 Score=102.74 Aligned_cols=177 Identities=21% Similarity=0.130 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHH
Q 004243 402 ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRF 481 (766)
Q Consensus 402 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~ 481 (766)
..+...+-+....+|++.. + ..+...+...|.-+.+ +....+.....|.+.....
T Consensus 50 ~~a~~al~~~~~~~p~d~~------i-~~~a~a~~~~G~a~~~------------------l~~~~~~~~~~~~d~~ll~ 104 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLS------I-AKLATALYLRGDADSS------------------LAVLQKSAIAYPKDRELLA 104 (257)
T ss_pred hHHHHHHHHHHhcCcchHH------H-HHHHHHHHhcccccch------------------HHHHhhhhccCcccHHHHH
Confidence 3355555555666777763 3 4444444444443333 3344666667788888887
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCC
Q 004243 482 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDP 561 (766)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~ 561 (766)
..|....+.|++.+|+..++++....|+++++|..+|.+|.+.|++++|...|.+++++.|+.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~----------------- 167 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE----------------- 167 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-----------------
Confidence 889999999999999999999999999999999999999999999999999999999988886
Q ss_pred CChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHH
Q 004243 562 ESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDE 639 (766)
Q Consensus 562 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~ 639 (766)
+.+..|+|..+.-.|+++.|..++..+... .+..+..+++.+...+|++++|...
T Consensus 168 -----------------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 168 -----------------------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred -----------------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 677888999999999999999999888877 3567888999999999999888776
Q ss_pred HHHH
Q 004243 640 MTKL 643 (766)
Q Consensus 640 ~~~~ 643 (766)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 5443
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=1.1e-08 Score=121.74 Aligned_cols=360 Identities=17% Similarity=0.067 Sum_probs=239.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-ccCCcccccccchhhhHHh
Q 004243 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA-LESNYMMFHGRVSGDHLVK 432 (766)
Q Consensus 354 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~a~~~l~ 432 (766)
.+...+..+...|++.+|+..+..+-....-.......++.....|++..+...+..+-. ....++ ......+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~------~l~~~~a 416 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENP------RLVLLQA 416 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCc------chHHHHH
Confidence 344556677889999999887665521110111122267777778888876666554311 111122 2334455
Q ss_pred HHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004243 433 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG---------KSFLRFRQSLLLLRLNCQKAAMRCLRLA 503 (766)
Q Consensus 433 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 503 (766)
.+....++++++..++ .++....+. .......++.++...|++++|...++++
T Consensus 417 ~~~~~~g~~~~a~~~l------------------~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 478 (903)
T PRK04841 417 WLAQSQHRYSEVNTLL------------------ARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELA 478 (903)
T ss_pred HHHHHCCCHHHHHHHH------------------HHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666667777775444 222221110 1234456788888999999999999999
Q ss_pred HhcCCCc-----hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-------HHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004243 504 RNHSSSE-----HERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESSTYVIQLL 571 (766)
Q Consensus 504 ~~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~ 571 (766)
+...+.. ..+...+|.++...|++++|...+++++...... .....++..+...| ++
T Consensus 479 l~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G-----------~~ 547 (903)
T PRK04841 479 LAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG-----------FL 547 (903)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC-----------CH
Confidence 8854442 2355678999999999999999999998764432 22334444444444 55
Q ss_pred HHHHhchhhccc----------c--chhHHhhHHHHHHhCCHHHHHHHHHHHHcc----C---ChHHHHHHHHHHHHhcc
Q 004243 572 EEALRCPSDGLR----------K--GQALNNLGSIYVECGKLDQAENCYINALDI----K---HTRAHQGLARVYYLKNE 632 (766)
Q Consensus 572 ~~A~~~~~~~l~----------~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~---~~~~~~~la~~~~~~g~ 632 (766)
++|...+++++. + ...+..+|.++...|++++|...+++++.. . ....+..+|.++...|+
T Consensus 548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 555555544432 1 134567889999999999999999999876 1 13456778999999999
Q ss_pred HHHHHHHHHHHHHhccCCH---HHH--------HHHhhhcCHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHhCCCH
Q 004243 633 LKAAYDEMTKLLEKAQYSA---SAF--------EKRSEYSDREMAKNDLNMATQLDPLRTY----PYRYRAAVLMDDQKE 697 (766)
Q Consensus 633 ~~~A~~~~~~~l~~~p~~~---~~~--------~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~ 697 (766)
+++|...+.++....+... ... ......|+.+.|...+.......+.... .+..+|.++...|++
T Consensus 628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 707 (903)
T PRK04841 628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF 707 (903)
T ss_pred HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence 9999999999976543321 110 1112457888888888776553322222 256889999999999
Q ss_pred HHHHHHHHHHHhcCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCh
Q 004243 698 VEAVEELSKAIAFKPD-----L--QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 748 (766)
Q Consensus 698 ~~A~~~~~~al~~~p~-----~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 748 (766)
++|...+++++..... . .....+|.++...|+.++|...+.+++++.....
T Consensus 708 ~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 708 DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 9999999999876221 1 2344789999999999999999999999875543
No 122
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=5.3e-11 Score=111.79 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=90.4
Q ss_pred HHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhh
Q 004243 323 WMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAAD 399 (766)
Q Consensus 323 ~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g 399 (766)
+-..|+-+...++| |+..|++||+++|+++..|.+||.+|.++|.++.|++.++.++.++|.....|. +|.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 33467777777776 999999999999999999999999999999999999999999999997777666 999999999
Q ss_pred hHHHHHHHHHHHHhccCCccc
Q 004243 400 DYESALRDTLALLALESNYMM 420 (766)
Q Consensus 400 ~~~~A~~~~~~al~~~p~~~~ 420 (766)
++++|++.|+++|+++|++..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHH
Confidence 999999999999999999994
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.25 E-value=7.2e-10 Score=122.27 Aligned_cols=137 Identities=13% Similarity=0.046 Sum_probs=97.4
Q ss_pred HHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-H
Q 004243 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-E 545 (766)
Q Consensus 467 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~ 545 (766)
.......|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..++++++.+|++ .
T Consensus 76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence 444556788899999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc----chhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK----GQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 546 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
+...++.++...| ++++|++.|++++.+ ..++..+|.++...|+.++|...|+++++.
T Consensus 156 ~~~~~a~~l~~~g-----------~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIG-----------QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhc-----------chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444444443 444444444444321 244444444444444444444444444444
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.25 E-value=1.1e-09 Score=120.82 Aligned_cols=132 Identities=11% Similarity=-0.076 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHH
Q 004243 385 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 464 (766)
Q Consensus 385 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~ 464 (766)
.+.++++|.+....|.+++|...++.++++.|++.. +...++.+....+++++|. .
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~------a~~~~a~~L~~~~~~eeA~------------------~ 141 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE------AFILMLRGVKRQQGIEAGR------------------A 141 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH------HHHHHHHHHHHhccHHHHH------------------H
Confidence 444444666666666666666666666666666553 5555555555555555553 2
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 004243 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (766)
Q Consensus 465 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (766)
.+++++..+|+++.+++.+|.++..+|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++.
T Consensus 142 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 142 EIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2355555666666666666666666666666666666665555555556666666666666666666666665553
No 125
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.1e-08 Score=95.23 Aligned_cols=381 Identities=14% Similarity=0.076 Sum_probs=223.9
Q ss_pred ccchhhHHHHHHHHhhcchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHH--HHHHhccHHHHHH
Q 004243 232 DRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLAR--AKYKVGQQYSAYK 309 (766)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~--~~~~~~~a~~~~~ 309 (766)
+.+.++++..+....+..+. .-..+..+|..|+...+|..|..+|++.-...|......+.. .+++-+....++.
T Consensus 23 d~ry~DaI~~l~s~~Er~p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HhhHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44566777777665555443 335677899999999999999999999999988877664332 2333333333333
Q ss_pred HHhhhccCC--CchhHHHHHHHHhccCcH--HHHHHHHHHhcCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004243 310 LINSIISEH--KPTGWMYQERSLYNLGRE--KIVDLNYASELDP--TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 383 (766)
Q Consensus 310 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 383 (766)
-+..+.... ........+-+.|..++. +....+ .-| +.+....+.|-+.++.|++++|++-|+.+++...
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH----hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 222111111 123334445555666654 333333 334 5677888999999999999999999999998877
Q ss_pred -CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc----cCCccc----------c---------cccchhhhHHhHHHHHHh
Q 004243 384 -SVDCLELRAWLFIAADDYESALRDTLALLAL----ESNYMM----------F---------HGRVSGDHLVKLLNHHVR 439 (766)
Q Consensus 384 -~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~----------~---------~~~~~a~~~l~~~~~~~~ 439 (766)
++...+.++.++++.|+++.|++....+++. .|.-.. . .+.+++..+...++...+
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 7777888999999999999999998888763 232210 0 112233344444444444
Q ss_pred hhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhH
Q 004243 440 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-----KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 514 (766)
Q Consensus 440 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 514 (766)
+++.|. +......|. +|..+.+++..-. .+++.+...-++-.++++|--++.+
T Consensus 256 n~eAA~---------------------eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 256 NYEAAQ---------------------EALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETF 313 (459)
T ss_pred cHHHHH---------------------HHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHH
Confidence 444442 222223332 4556666665443 3667777777777888888878888
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHccccch------HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhH
Q 004243 515 VYEGWILYDTGHREEALSRAEKSISIERTF------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQAL 588 (766)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 588 (766)
.++-.+|.+..-++-|...+- .+|+. +..+.+..++......+......++.+...+. .-+++..+-
T Consensus 314 ANlLllyCKNeyf~lAADvLA----En~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~---~kLRklAi~ 386 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLA----ENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLT---EKLRKLAIQ 386 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHh----hCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 888888888887887766543 34443 33445555555544444333333332222211 001000000
Q ss_pred HhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccC
Q 004243 589 NNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 649 (766)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 649 (766)
......-........|++.|+++++.- ..+....+.+++...++..+.+.|....+.-.+
T Consensus 387 vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~e 446 (459)
T KOG4340|consen 387 VQEARHNRDDEAIRKAVNEYDETLEKY-LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCND 446 (459)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccccHHHHHHHHHHHhhhcc
Confidence 011110011112234444555554431 124455677777778888887777777665443
No 126
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.21 E-value=2.7e-08 Score=118.44 Aligned_cols=380 Identities=13% Similarity=-0.036 Sum_probs=242.2
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh----HHHHHHHHhccHHHHHHHHhhhcc----CCCchhHHHH
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA----GLARAKYKVGQQYSAYKLINSIIS----EHKPTGWMYQ 326 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~l~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~ 326 (766)
....+...+..+...|++.+|+..+..+-. ..... ..+......+.... ...+....+ ...+......
T Consensus 340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~-l~~~l~~lp~~~~~~~~~l~~~~ 415 (903)
T PRK04841 340 LPELHRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSL-LEECLNALPWEVLLENPRLVLLQ 415 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHH-HHHHHHhCCHHHHhcCcchHHHH
Confidence 345566677888889999999886655422 11111 12223333343222 222222222 1234444455
Q ss_pred HHHHhccCcH--HHHHHHHHHhcCCC---------CchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH------HHH
Q 004243 327 ERSLYNLGRE--KIVDLNYASELDPT---------LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD------CLE 389 (766)
Q Consensus 327 ~~~~~~~~~~--A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~ 389 (766)
+..++..++. |...+.++....+. .......+|.++...|++++|...+++++...+... ...
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 5666666664 77777777654221 123445678888999999999999999987545221 223
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHH
Q 004243 390 LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 469 (766)
Q Consensus 390 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~a 469 (766)
.+|.++...|++++|...+++++..............+...++.++...|+++.|...+ .++
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~------------------~~a 557 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ------------------EKA 557 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH------------------HHH
Confidence 48888999999999999999999865543322222346677888888899999986544 333
Q ss_pred HHc-----C---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CchhhHHHHHHHHHHCCCHHHHHHHHHH
Q 004243 470 LIN-----D---PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-----SEHERLVYEGWILYDTGHREEALSRAEK 536 (766)
Q Consensus 470 l~~-----~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (766)
+.. . +.....+..+|.++...|++++|...+++++.... .....+..+|.++...|++++|...+.+
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 322 1 11223456788899999999999999998876532 1245566789999999999999999999
Q ss_pred HHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC
Q 004243 537 SISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 615 (766)
Q Consensus 537 al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (766)
+..+.+.. ...... ..........+...|+.+.|..++.......
T Consensus 638 a~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 683 (903)
T PRK04841 638 LENLLGNGRYHSDWI----------------------------------ANADKVRLIYWQMTGDKEAAANWLRQAPKPE 683 (903)
T ss_pred HHHHHhcccccHhHh----------------------------------hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 87653321 000000 0000111234455788888888877765532
Q ss_pred Ch------HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 004243 616 HT------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAA 689 (766)
Q Consensus 616 ~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 689 (766)
.. ..+..++.++...|++++|...+++++....... ..+....++..+|.
T Consensus 684 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g------------------------~~~~~a~~~~~la~ 739 (903)
T PRK04841 684 FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR------------------------LMSDLNRNLILLNQ 739 (903)
T ss_pred CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------------------------chHHHHHHHHHHHH
Confidence 11 1246788899999999999999988876532110 11122456677888
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 690 VLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 690 ~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
++...|+.++|...+.+++++....
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 8888888888888888888875433
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.20 E-value=1.6e-09 Score=100.08 Aligned_cols=177 Identities=14% Similarity=0.018 Sum_probs=157.3
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFIAADDYESALRDTLALLALE 415 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 415 (766)
+...+-+....+|++..+ .+.+..+...|+-+.+.....++....|.. ..+..+|...+..|++.+|+..++++..+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 666666788889999999 999999999999999999999977666643 334348999999999999999999999999
Q ss_pred CCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHH
Q 004243 416 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 495 (766)
Q Consensus 416 p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 495 (766)
|++. +++..+|.++...|+++.|. ..|.+++++.|+.+.+..++|..+.-.|+++.
T Consensus 131 p~d~------~~~~~lgaaldq~Gr~~~Ar------------------~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~ 186 (257)
T COG5010 131 PTDW------EAWNLLGAALDQLGRFDEAR------------------RAYRQALELAPNEPSIANNLGMSLLLRGDLED 186 (257)
T ss_pred CCCh------hhhhHHHHHHHHccChhHHH------------------HHHHHHHHhccCCchhhhhHHHHHHHcCCHHH
Confidence 9999 59999999999999999996 34589999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004243 496 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 538 (766)
Q Consensus 496 A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (766)
|...+..+....+.+..+..+++.+....|++++|.....+-+
T Consensus 187 A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 187 AETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999999999988899999999999999999999988766544
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.17 E-value=3.6e-10 Score=100.03 Aligned_cols=111 Identities=11% Similarity=0.025 Sum_probs=89.4
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 465 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.+.+++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36788888888888888888888888888888888888888888888888888888888888888888888888887775
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC
Q 004243 545 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 615 (766)
Q Consensus 545 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (766)
...++.+|.++...|++++|+..|+++++..
T Consensus 85 ----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 85 ----------------------------------------PRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4556666677777777777777777666664
No 129
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=1.1e-09 Score=108.55 Aligned_cols=254 Identities=17% Similarity=0.058 Sum_probs=162.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCCh
Q 004243 486 LLLRLNCQKAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 564 (766)
Q Consensus 486 ~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 564 (766)
-++..|+|..++...+ ....+|. ..+....+.+++..+|+++..+......- .|...+...++..+.. +.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~----~~-- 80 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSS----PS-- 80 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCT----ST--
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhC----cc--
Confidence 3455678888776665 2233332 34456667777777887776554443211 3333444444433322 11
Q ss_pred HHHHHHHHHHHhchhhccc----c--chhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHH
Q 004243 565 TYVIQLLEEALRCPSDGLR----K--GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYD 638 (766)
Q Consensus 565 ~~~~~~~~~A~~~~~~~l~----~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~ 638 (766)
..+.++..++..+. + +......|.++...|++++|++.+.+. ++.+.......++...++++.|.+
T Consensus 81 -----~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 81 -----DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp -----THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred -----chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHH
Confidence 11222222222221 1 233445566677778888887776654 455666667778888888888888
Q ss_pred HHHHHHHhccCCHH-----HHHHHhhh-cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 004243 639 EMTKLLEKAQYSAS-----AFEKRSEY-SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP 712 (766)
Q Consensus 639 ~~~~~l~~~p~~~~-----~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 712 (766)
.++.+.+.+.+..- +|..+..- .++.+|...|+...+..|..+..+..+|.+.+.+|+|++|.+.++++++.+|
T Consensus 153 ~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 153 ELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 88887766655432 33333322 3578888999988777778889999999999999999999999999999999
Q ss_pred ChH-HHHHHHHHHHHcCCH-HHHHHHHHHHHccCCCChhHHHHHHH
Q 004243 713 DLQ-MLHLRAAFYESIGDL-TSAIRDSQAALCLDPNHMETLDLYNR 756 (766)
Q Consensus 713 ~~~-~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~ 756 (766)
+++ .+.+++.+...+|+. +.+.++..+....+|+|+-+...-.+
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 995 455899999999998 66778888888899999887665543
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=4.3e-08 Score=89.74 Aligned_cols=171 Identities=18% Similarity=0.134 Sum_probs=119.1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHH
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 551 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~ 551 (766)
.|+....+-....+....|+..-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+ ..+.
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K--- 124 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK--- 124 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH---
Confidence 344445566667778888999999999999988889999999999999999999999999999999999988 2222
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHH
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYL 629 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~ 629 (766)
..-.+...+|+..+|++.+..-++. ++.++|..++.+|..
T Consensus 125 --------------------------------------RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 125 --------------------------------------RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS 166 (289)
T ss_pred --------------------------------------HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 2223344556666777777776666 567777777777777
Q ss_pred hccHHHHHHHHHHHHHhccCCHHHHHHHh-------hhcCHHHHHHHHHHHHhcCCCCchhH
Q 004243 630 KNELKAAYDEMTKLLEKAQYSASAFEKRS-------EYSDREMAKNDLNMATQLDPLRTYPY 684 (766)
Q Consensus 630 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~-------~~~~~~~A~~~~~~al~~~p~~~~~~ 684 (766)
.|++++|.-++++++-..|-++..+..++ ...+.+-|..+|.++++++|.+..++
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 77777777777777766666554443333 12233444444444444444433333
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.14 E-value=1.2e-09 Score=94.27 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=100.0
Q ss_pred HHHHHcC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchH
Q 004243 467 NQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (766)
Q Consensus 467 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 545 (766)
.....+. ++..+..+.+|..+...|++++|...|+.....+|.++..|+++|.++..+|++++|+..|.+++.++|++
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd- 102 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA- 102 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-
Confidence 3444566 77888899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 546 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
+..+.++|.+++..|+.+.|.+.|+.++..
T Consensus 103 ---------------------------------------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 103 ---------------------------------------PQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred ---------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778899999999999999999999999987
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.13 E-value=1.3e-09 Score=94.12 Aligned_cols=98 Identities=17% Similarity=0.063 Sum_probs=62.6
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQA 739 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~ 739 (766)
|++++|...|+....++|.++..|++||.++..+|++++|+..|.+++.++|+++ ..++.|.|+...|+.+.|++.|+.
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555555555556666666677777777777777777777777777777763 344777777777777777777777
Q ss_pred HHccCCCChhHHHHHHHHH
Q 004243 740 ALCLDPNHMETLDLYNRAR 758 (766)
Q Consensus 740 al~~~p~~~~~~~~l~~~~ 758 (766)
++...-.+++-..+..+++
T Consensus 129 Ai~~~~~~~~~~~l~~~A~ 147 (157)
T PRK15363 129 VVRICGEVSEHQILRQRAE 147 (157)
T ss_pred HHHHhccChhHHHHHHHHH
Confidence 7776644444333333333
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=1.3e-08 Score=102.24 Aligned_cols=148 Identities=21% Similarity=0.184 Sum_probs=130.8
Q ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 004243 615 KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAV 690 (766)
Q Consensus 615 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 690 (766)
....++++.+..++..|++++|...++..+...|+|+..+...+ ..++.++|.+.+++++.++|+.+..+.++|.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 45578999999999999999999999999999999999888888 56899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhh
Q 004243 691 LMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 691 ~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 762 (766)
|++.|++.+|+..++..+..+|+++..+ .+|..|..+|+..+|...+-..+.+.-+...++..+.+++++.+
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999995544 88999999999888888888888888887788877777777664
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.08 E-value=1.3e-09 Score=112.35 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=90.0
Q ss_pred hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCCHHHHHHHHH
Q 004243 660 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQ 738 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~ 738 (766)
.|++++|+..|+++++.+|+++.++.++|.++...|++++|+..+++++.++|++. .++.+|.++..+|++++|+..|+
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 35667777777777777888888889999999999999999999999999999884 55588999999999999999999
Q ss_pred HHHccCCCChhHHHHHHHHHHhhhh
Q 004243 739 AALCLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 739 ~al~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
++++++|+++++...+.++...+++
T Consensus 95 ~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 95 KGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999888887754
No 135
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=1.6e-08 Score=100.36 Aligned_cols=249 Identities=12% Similarity=0.043 Sum_probs=162.1
Q ss_pred HhhcccHHHHHHHHHHHHhcCccccH---hHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCc-H-HHHH
Q 004243 266 MFEREEYKDACYYFEAAADAGHIYSL---AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR-E-KIVD 340 (766)
Q Consensus 266 ~~~~g~~~~A~~~~~~al~~~~~~~~---~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-A~~~ 340 (766)
++-.|+|..++..++ ....++.... .-++|.+...|+.......+.+.. .....+....+..+....+ + ++..
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 455678888877666 2222332211 145566666666444443332211 1122333333333322112 2 6666
Q ss_pred HHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCc
Q 004243 341 LNYASELD--PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (766)
Q Consensus 341 ~~~al~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 418 (766)
++..+... +.++......|.++...|++++|++.+.+. .+.+...+...+++..++++.|.+.++.+-+.+.+.
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~ 164 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS 164 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH
Confidence 65554332 234556677788898999999999888765 345666668899999999999999999988887665
Q ss_pred ccccccchhhhHHhHHHHHHh--hhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHH
Q 004243 419 MMFHGRVSGDHLVKLLNHHVR--SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 496 (766)
Q Consensus 419 ~~~~~~~~a~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 496 (766)
.. .....+.+....| .+..| ...|+...+..|..+..+..++.+++.+|+|++|
T Consensus 165 ~l------~qLa~awv~l~~g~e~~~~A------------------~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 165 IL------TQLAEAWVNLATGGEKYQDA------------------FYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp HH------HHHHHHHHHHHHTTTCCCHH------------------HHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred HH------HHHHHHHHHHHhCchhHHHH------------------HHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 52 2222222333333 23333 5567887777788899999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHCCCH-HHHHHHHHHHHccccch
Q 004243 497 MRCLRLARNHSSSEHERLVYEGWILYDTGHR-EEALSRAEKSISIERTF 544 (766)
Q Consensus 497 ~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~ 544 (766)
.+.+++++..+|.+++++.+++.+....|+. +.+.+++.+....+|++
T Consensus 221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999998 66778888888888887
No 136
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.05 E-value=5e-10 Score=106.79 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=117.3
Q ss_pred eEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCC----eEEecCCCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 004243 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRK----TIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 132 (766)
Q Consensus 57 v~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~----~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~~l 132 (766)
|.+-++ .+.|||+.++ .|++||+.||.|+|.|++.+ ...+ +..+..+.+.+++|+|+++.+ +..+-+.+++
T Consensus 295 iql~~~-~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lsl--p~~~~~vveI~lr~lY~d~td-i~~~~A~dvl 369 (516)
T KOG0511|consen 295 IQLPEE-DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSL--PSLADVVVEIDLRNLYCDQTD-IIFDVASDVL 369 (516)
T ss_pred cccccc-ccccHHHHHH-HHHHHHHHHhccchhhhcCCcccccccc--chHHHHHHHHHHHHhhccccc-chHHHHhhHH
Confidence 444443 4699999999 57899999999999997633 3345 677889999999999999999 9999999999
Q ss_pred HHhhhhChH---hHHHHHHHHHHhhcCC--hhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCcccccccccCchH
Q 004243 133 SFANRFCCE---EMKSACDAHLASLVGD--IEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEA 206 (766)
Q Consensus 133 ~~a~~~~~~---~l~~~c~~~l~~~~~~--~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~ 206 (766)
-+|+++.+. .|+.....-+.+..-. .-||+.|+..+...+...|...+..|+..|+......+++...+..+.+
T Consensus 370 l~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~~ 448 (516)
T KOG0511|consen 370 LFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSVP 448 (516)
T ss_pred HHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhccc
Confidence 999999776 2666666666544331 4579999999999999999999999999999999999998876544333
No 137
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.03 E-value=1.9e-08 Score=95.16 Aligned_cols=177 Identities=16% Similarity=0.116 Sum_probs=112.5
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccC
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (766)
.+..++..|..++..|+|.+|+..|++++...|....+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a------------------------------------------ 41 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA------------------------------------------ 41 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH------------------------------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH------------------------------------------
Confidence 34567777888888888888888888877776655444
Q ss_pred cHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH----HHHHHHHHHHHh-----------hh
Q 004243 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DCLELRAWLFIA-----------AD 399 (766)
Q Consensus 335 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~a~~~~~-----------~g 399 (766)
+.+.+.+|.+++..|++++|+..+++.++..|+. ..++.+|.+++. .+
T Consensus 42 -----------------~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~ 104 (203)
T PF13525_consen 42 -----------------PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQT 104 (203)
T ss_dssp -----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---H
T ss_pred -----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChH
Confidence 2344555566666666666666666666665522 123445555443 34
Q ss_pred hHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhH
Q 004243 400 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 479 (766)
Q Consensus 400 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~ 479 (766)
...+|+..|+..+...|+..... ++...+..+...+ ..-
T Consensus 105 ~~~~A~~~~~~li~~yP~S~y~~---~A~~~l~~l~~~l--------------------------------------a~~ 143 (203)
T PF13525_consen 105 STRKAIEEFEELIKRYPNSEYAE---EAKKRLAELRNRL--------------------------------------AEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHH-TTSTTHH---HHHHHHHHHHHHH--------------------------------------HHH
T ss_pred HHHHHHHHHHHHHHHCcCchHHH---HHHHHHHHHHHHH--------------------------------------HHH
Confidence 56689999999999999988300 1111111111111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHHHHH
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEAL 531 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~ 531 (766)
-+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..+..+|..+.|.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3567899999999999999999999999986 567888999999999988553
No 138
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.99 E-value=9.2e-08 Score=90.46 Aligned_cols=188 Identities=20% Similarity=0.143 Sum_probs=126.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 552 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 552 (766)
.+..++..|..++..|+|.+|+..|+++....|.. +.+.+.+|.+++..|++++|+..+++.++..|+++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~------ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK------ 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------
Confidence 45678888999999999999999999998887765 667888999999999999999999999998888600
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhcc
Q 004243 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNE 632 (766)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~ 632 (766)
-+.+++.+|.++....+ ..+ ......+.
T Consensus 78 -------------------------------~~~A~Y~~g~~~~~~~~---------~~~------------~~~~D~~~ 105 (203)
T PF13525_consen 78 -------------------------------ADYALYMLGLSYYKQIP---------GIL------------RSDRDQTS 105 (203)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHH---------HHH-------------TT---HH
T ss_pred -------------------------------hhhHHHHHHHHHHHhCc---------cch------------hcccChHH
Confidence 02334444544433200 000 12234456
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 004243 633 LKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP 712 (766)
Q Consensus 633 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 712 (766)
..+|+..|+..+...|++..+- +|...+..+- .....--+.+|..|.+.|.|..|+..++.+++..|
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~----------~A~~~l~~l~---~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAE----------EAKKRLAELR---NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHH----------HHHHHHHHHH---HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHCcCchHHH----------HHHHHHHHHH---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 7789999999999999987652 2222222111 11233446689999999999999999999999999
Q ss_pred ChH----HHHHHHHHHHHcCCHHHHH
Q 004243 713 DLQ----MLHLRAAFYESIGDLTSAI 734 (766)
Q Consensus 713 ~~~----~~~~la~~~~~~g~~~~A~ 734 (766)
+.+ ++..++..|.++|..+.|.
T Consensus 173 ~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 173 DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 883 4558899999999988554
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.98 E-value=9.4e-08 Score=92.51 Aligned_cols=202 Identities=14% Similarity=0.038 Sum_probs=137.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhh---HHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHH
Q 004243 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER---LVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 551 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 551 (766)
..+..++..|..+...|++++|++.|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++-
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~----- 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN----- 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-----
Confidence 356667788888888999999999999999888887554 478899999999999999999999998888700
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhc
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKN 631 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g 631 (766)
-+.+++.+|.++...++- .+..-..++ .....+.
T Consensus 105 --------------------------------~~~a~Y~~g~~~~~~~~~-----~~~~~~~~~---------~~~rD~~ 138 (243)
T PRK10866 105 --------------------------------IDYVLYMRGLTNMALDDS-----ALQGFFGVD---------RSDRDPQ 138 (243)
T ss_pred --------------------------------hHHHHHHHHHhhhhcchh-----hhhhccCCC---------ccccCHH
Confidence 023344444433222110 010000000 0111223
Q ss_pred cHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 004243 632 ELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK 711 (766)
Q Consensus 632 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 711 (766)
...+|+..|++.++..|++.-+ .+|...+..+ ....+.--+..|..|.+.|.|.-|+.-++.+++..
T Consensus 139 ~~~~A~~~~~~li~~yP~S~ya----------~~A~~rl~~l---~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y 205 (243)
T PRK10866 139 HARAAFRDFSKLVRGYPNSQYT----------TDATKRLVFL---KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY 205 (243)
T ss_pred HHHHHHHHHHHHHHHCcCChhH----------HHHHHHHHHH---HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC
Confidence 3467889999999999988654 2222222211 11123344578999999999999999999999998
Q ss_pred CCh----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 712 PDL----QMLHLRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 712 p~~----~~~~~la~~~~~~g~~~~A~~~~~~a 740 (766)
|+. .+++.++..|..+|..++|.......
T Consensus 206 p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 206 PDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 877 45668899999999999998876544
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=8.3e-08 Score=96.52 Aligned_cols=130 Identities=17% Similarity=0.128 Sum_probs=106.5
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHH
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 552 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 552 (766)
+|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|.+.+++++.++|+.
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-------- 373 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-------- 373 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--------
Confidence 367788889999999999999999999999999999999999999999999999999999999999988886
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHh
Q 004243 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLK 630 (766)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~ 630 (766)
...+.++|.+|+..|++++|+..++..+.. +++..|..+|.+|..+
T Consensus 374 --------------------------------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~ 421 (484)
T COG4783 374 --------------------------------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL 421 (484)
T ss_pred --------------------------------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 455677788888888888888888877776 4567788888888888
Q ss_pred ccHHHHHHHHHH
Q 004243 631 NELKAAYDEMTK 642 (766)
Q Consensus 631 g~~~~A~~~~~~ 642 (766)
|+..+|...+.+
T Consensus 422 g~~~~a~~A~AE 433 (484)
T COG4783 422 GNRAEALLARAE 433 (484)
T ss_pred CchHHHHHHHHH
Confidence 877666554433
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.95 E-value=9.5e-08 Score=92.48 Aligned_cols=178 Identities=14% Similarity=0.064 Sum_probs=123.3
Q ss_pred CchhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHH---HHHHHHHHHcCCHHHHHHHHHHHHccCCC----HHHHH
Q 004243 319 KPTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPY---KYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLE 389 (766)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~---~~~a~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~ 389 (766)
++..++..|...+..|++ |+..|++++...|..+.+. +.+|.++++.+++++|+..+++.++..|+ +..++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 445566666667767775 8888888888888776543 77788888888888888888888888872 22355
Q ss_pred HHHHHHHhhh------------------hHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhh
Q 004243 390 LRAWLFIAAD------------------DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 451 (766)
Q Consensus 390 ~~a~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~ 451 (766)
.+|.++...+ ...+|+..|+..++..|+..- . .++...+..+...+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-a--~~A~~rl~~l~~~l------------- 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-T--TDATKRLVFLKDRL------------- 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-H--HHHHHHHHHHHHHH-------------
Confidence 5676653332 235677778888888887662 0 01111111111111
Q ss_pred hhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHH
Q 004243 452 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHRE 528 (766)
Q Consensus 452 ~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~ 528 (766)
..--+..|..|.+.|.|..|+.-++.+++..|+. ++++..++..|..+|..+
T Consensus 175 -------------------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~ 229 (243)
T PRK10866 175 -------------------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA 229 (243)
T ss_pred -------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH
Confidence 1223467889999999999999999999988875 678899999999999999
Q ss_pred HHHHHHHHH
Q 004243 529 EALSRAEKS 537 (766)
Q Consensus 529 ~A~~~~~~a 537 (766)
+|.......
T Consensus 230 ~a~~~~~~l 238 (243)
T PRK10866 230 QADKVAKII 238 (243)
T ss_pred HHHHHHHHH
Confidence 998876543
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.94 E-value=2e-08 Score=86.52 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 004243 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 696 (766)
Q Consensus 617 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 696 (766)
++.++.+|..+...|++++|++.+.+++...|++ |..+.+++.+|.++...|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~ 54 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---------------------------TYAPNAHYWLGEAYYAQGK 54 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------------------cccHHHHHHHHHHHHhhcc
Confidence 3567778888888888888888877777665543 1225678889999999999
Q ss_pred HHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHH
Q 004243 697 EVEAVEELSKAIAFKPDL----QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 756 (766)
Q Consensus 697 ~~~A~~~~~~al~~~p~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 756 (766)
+++|+..|++++...|++ ..++.+|.++...|++++|+..++++++..|+++.+.....+
T Consensus 55 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 55 YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 999999999999998875 356688999999999999999999999999999887665443
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.93 E-value=3.5e-09 Score=80.73 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=64.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCC-CHHHHHHHHHHHHcccc
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIER 542 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 542 (766)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57889999999999999999999999999999999999999999999999 79999999999999987
No 144
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=7.9e-08 Score=85.56 Aligned_cols=198 Identities=16% Similarity=0.080 Sum_probs=131.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 555 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 555 (766)
.+..++.+|..|-..|-+.-|.-.|.+++.+.|+-+++++.+|..+...|+++.|.+.|...++++|.+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y----------- 132 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----------- 132 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-----------
Confidence 456788899999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHH-HHHhccHH
Q 004243 556 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARV-YYLKNELK 634 (766)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~-~~~~g~~~ 634 (766)
.-+..+.|..+.-.|++.-|.+.+.+-.+.++.+.+..+=.- -...-++.
T Consensus 133 -----------------------------~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~ 183 (297)
T COG4785 133 -----------------------------NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPK 183 (297)
T ss_pred -----------------------------hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHH
Confidence 334455566666667777777777766666433322222111 12233455
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHh-hhcCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhCCCHHHHHHHHHH
Q 004243 635 AAYDEMTKLLEKAQYSASAFEKRS-EYSDREMAKNDLNMATQLDPLR-------TYPYRYRAAVLMDDQKEVEAVEELSK 706 (766)
Q Consensus 635 ~A~~~~~~~l~~~p~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~ 706 (766)
+|...+.+-.+...+..+.|...+ .+|+.. -...++++.....++ .+.++.+|..+...|+.++|...|+-
T Consensus 184 ~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKL 262 (297)
T COG4785 184 QAKTNLKQRAEKSDKEQWGWNIVEFYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKL 262 (297)
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 555544443333333333333333 222221 111222222222222 67888999999999999999999988
Q ss_pred HHhcCCCh
Q 004243 707 AIAFKPDL 714 (766)
Q Consensus 707 al~~~p~~ 714 (766)
++..+--+
T Consensus 263 aiannVyn 270 (297)
T COG4785 263 AVANNVYN 270 (297)
T ss_pred HHHHhHHH
Confidence 87765443
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.92 E-value=3.6e-09 Score=80.69 Aligned_cols=66 Identities=27% Similarity=0.358 Sum_probs=61.7
Q ss_pred CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q 004243 680 RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIG-DLTSAIRDSQAALCLDP 745 (766)
Q Consensus 680 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 745 (766)
++..|..+|.++...|++++|+..|+++++++|++ ..++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56789999999999999999999999999999999 55669999999999 79999999999999998
No 146
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3e-08 Score=97.78 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHH
Q 004243 620 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 699 (766)
Q Consensus 620 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 699 (766)
.-..|..+++.|++..|...|++++..-+..... +.++..... ++ ...++.+++.++.++++|.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~--------~~ee~~~~~--~~-----k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF--------DEEEQKKAE--AL-----KLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC--------CHHHHHHHH--HH-----HHHHhhHHHHHHHhhhhHHH
Confidence 3445777778888888888888776543211110 001110000 11 13578899999999999999
Q ss_pred HHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhhh
Q 004243 700 AVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQ 764 (766)
Q Consensus 700 A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 764 (766)
|+..++++|+.+|++ .++|.+|.++..+|+++.|+..|+++++++|+|.++..-+.++++..+++
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999 78889999999999999999999999999999999988888887776654
No 147
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.86 E-value=1.2e-06 Score=84.24 Aligned_cols=246 Identities=12% Similarity=0.085 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHH-HHH---HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhh
Q 004243 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC-LEL---RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 428 (766)
Q Consensus 353 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~---~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 428 (766)
.-....|.-++...++++|+..+.+.+..-.+... +.. +..+...+|.|++++..--..+....+.....-..+++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888999999998888754433322 221 56677788888888766544444222111100011345
Q ss_pred hHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcC---C--CChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004243 429 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND---P--GKSFLRFRQSLLLLRLNCQKAAMRCLRLA 503 (766)
Q Consensus 429 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~---p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 503 (766)
..++..++...++.+++.+- ...+... | .-......+|.++..++.++++++.|++|
T Consensus 87 lnlar~~e~l~~f~kt~~y~------------------k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A 148 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYC------------------KTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKA 148 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHH------------------HHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHH
Confidence 55555555555555543111 1112211 1 12246667899999999999999999999
Q ss_pred HhcCCCc------hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhc
Q 004243 504 RNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRC 577 (766)
Q Consensus 504 ~~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 577 (766)
++...++ -.++..+|..+.+..|+++|+-+..++.++-.+. +++.-.. .+.
T Consensus 149 ~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~-------------~l~d~~~-----kyr----- 205 (518)
T KOG1941|consen 149 LRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY-------------GLKDWSL-----KYR----- 205 (518)
T ss_pred HHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc-------------CcCchhH-----HHH-----
Confidence 8875443 3467889999999999999999999988765332 0000000 011
Q ss_pred hhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----C----ChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004243 578 PSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (766)
Q Consensus 578 ~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 646 (766)
..+.+.++..+..+|+.-.|.++.+++.++ + +......+|.+|...|+.+.|...|+++...
T Consensus 206 -------~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 206 -------AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred -------HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 245788899999999999999999999887 2 2356788999999999999999999998755
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.85 E-value=4.3e-08 Score=101.17 Aligned_cols=111 Identities=12% Similarity=0.049 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCC
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL 559 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~ 559 (766)
+...|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--------------- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--------------- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence 45668888899999999999999999999999999999999999999999999999999999987
Q ss_pred CCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHh
Q 004243 560 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK 630 (766)
Q Consensus 560 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~ 630 (766)
+.+++.+|.++..+|++++|+..|+++++++ ++.+...++.+....
T Consensus 70 -------------------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 70 -------------------------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999984 456666666665444
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.82 E-value=1.9e-08 Score=75.58 Aligned_cols=64 Identities=23% Similarity=0.234 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCh
Q 004243 685 RYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 748 (766)
Q Consensus 685 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 748 (766)
+.+|..++..|++++|+..|+++++.+|++ ..++.+|.++..+|++++|+..|+++++.+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 357899999999999999999999999998 5666999999999999999999999999999986
No 150
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.80 E-value=3.4e-06 Score=81.27 Aligned_cols=313 Identities=17% Similarity=0.089 Sum_probs=185.1
Q ss_pred HHHhhhHHhhcccHHHHHHHHHHHHhcCccc-----cHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhcc
Q 004243 259 LHQLGCVMFEREEYKDACYYFEAAADAGHIY-----SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (766)
Q Consensus 259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (766)
...-|.-++...++++|+..+.+.+..-.+. ....+.......|.+.+.+..+..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~s-------------------- 68 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVS-------------------- 68 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHH--------------------
Confidence 3456788889999999999999988651111 111223333333443333332222
Q ss_pred CcHHHHHHHHHHhcCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-----HHH-HHHHHHHHHhhhhHHHHH
Q 004243 334 GREKIVDLNYASELDPT--LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDC-LELRAWLFIAADDYESAL 405 (766)
Q Consensus 334 ~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-----~~~-~~~~a~~~~~~g~~~~A~ 405 (766)
..+-+.+.+.. ...++.+++..+...-++.+++.+.+-.+.+... +.. ...+|..+..++.+++++
T Consensus 69 ------qi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~L 142 (518)
T KOG1941|consen 69 ------QIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKAL 142 (518)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHH
Confidence 22222222211 1357788888888888888888888777665431 111 222888888899999999
Q ss_pred HHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHH
Q 004243 406 RDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSL 485 (766)
Q Consensus 406 ~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~ 485 (766)
+.|+++++...++....-. ..++..+|.
T Consensus 143 esfe~A~~~A~~~~D~~LE----------------------------------------------------lqvcv~Lgs 170 (518)
T KOG1941|consen 143 ESFEKALRYAHNNDDAMLE----------------------------------------------------LQVCVSLGS 170 (518)
T ss_pred HHHHHHHHHhhccCCceee----------------------------------------------------eehhhhHHH
Confidence 9999998865444421111 123445556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC----------chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHH
Q 004243 486 LLLRLNCQKAAMRCLRLARNHSSS----------EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 555 (766)
Q Consensus 486 ~~~~~g~~~~A~~~~~~a~~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 555 (766)
.+..+.|+++|+-...+|.++... ...+++.++..+...|+...|.++.+++.++.-..
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~----------- 239 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH----------- 239 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh-----------
Confidence 666666666666655555443211 13456778888889999999999998887753221
Q ss_pred hcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----C----ChHHHHHHHHHH
Q 004243 556 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVY 627 (766)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~----~~~~~~~la~~~ 627 (766)
| ++|+. +.....+|.+|...|+.+.|..-|++|... + ...++.+.|.+.
T Consensus 240 --G-------------dra~~--------arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~ 296 (518)
T KOG1941|consen 240 --G-------------DRALQ--------ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCL 296 (518)
T ss_pred --C-------------ChHHH--------HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 0 11111 345677899999999999999999988765 1 234555555554
Q ss_pred HHhccHHH-----HHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHH
Q 004243 628 YLKNELKA-----AYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 702 (766)
Q Consensus 628 ~~~g~~~~-----A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 702 (766)
....-..+ |++.-+++++....-..-+ ..-..+..++.+|...|.-++=..
T Consensus 297 ~~~r~~~k~~~Crale~n~r~levA~~IG~K~------------------------~vlK~hcrla~iYrs~gl~d~~~~ 352 (518)
T KOG1941|consen 297 ETLRLQNKICNCRALEFNTRLLEVASSIGAKL------------------------SVLKLHCRLASIYRSKGLQDELRA 352 (518)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHhhhhH------------------------HHHHHHHHHHHHHHhccchhHHHH
Confidence 44333332 5555555544422111000 013456677778877777666555
Q ss_pred HHHHH
Q 004243 703 ELSKA 707 (766)
Q Consensus 703 ~~~~a 707 (766)
.+.++
T Consensus 353 h~~ra 357 (518)
T KOG1941|consen 353 HVVRA 357 (518)
T ss_pred HHHHH
Confidence 55554
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.3e-07 Score=90.29 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCC---HHHHHHHHHHHHc
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH---REEALSRAEKSIS 539 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~ 539 (766)
+..++.-+..+|++++-|..+|.+|+.+|++..|...|.++.++.|++++.+..+|.+++...+ ..++...++++++
T Consensus 142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 4456788889999999999999999999999999999999999999999999999998876543 5688999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC
Q 004243 540 IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH 616 (766)
Q Consensus 540 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 616 (766)
.+|++ ..+.+.+|..++..|+|.+|...++..++..+
T Consensus 222 ~D~~~----------------------------------------iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 222 LDPAN----------------------------------------IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred cCCcc----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99987 55667777888888888888888888888743
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.77 E-value=3e-08 Score=74.40 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
+.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999999999999999999999999999999999999985
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.76 E-value=2e-07 Score=100.10 Aligned_cols=86 Identities=22% Similarity=0.178 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhc--CCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 664 EMAKNDLNMATQL--DPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 664 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
..+....++++.+ +|..+.++..+|......|++++|...+++|+.++|+...+..+|.++...|+.++|++.|++|+
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666553 77778889999999999999999999999999999976667789999999999999999999999
Q ss_pred ccCCCChh
Q 004243 742 CLDPNHME 749 (766)
Q Consensus 742 ~~~p~~~~ 749 (766)
.++|.++.
T Consensus 481 ~L~P~~pt 488 (517)
T PRK10153 481 NLRPGENT 488 (517)
T ss_pred hcCCCCch
Confidence 99999875
No 154
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.75 E-value=3.2e-08 Score=94.07 Aligned_cols=215 Identities=12% Similarity=0.035 Sum_probs=146.6
Q ss_pred HHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhh
Q 004243 324 MYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADD 400 (766)
Q Consensus 324 ~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~ 400 (766)
-..|+.|+.+|++ ||.+|.+++..+|.|+..+.++|.+|+++..|..|...++.++.++......|. +|.....+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3578899999996 999999999999999999999999999999999999999999999886666555 8999999999
Q ss_pred HHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHH
Q 004243 401 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR 480 (766)
Q Consensus 401 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~ 480 (766)
..+|.+.++.+|.+.|++.. +...+..+....++. -+.+..|....+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----------LkK~~a~i~Sl~E~~----------------------I~~KsT~G~~~A~ 228 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----------LKKSLARINSLRERK----------------------IATKSTPGFTPAR 228 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----------HHHHHHHhcchHhhh----------------------HHhhcCCCCCccc
Confidence 99999999999999999764 222222222222221 1111112211111
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHH
Q 004243 481 ---------FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK 550 (766)
Q Consensus 481 ---------~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~ 550 (766)
-..|..+...|.++.++..+.+-+..+.++...-.+ +..+.+.-++++|+...-+++-.+|.. ..
T Consensus 229 Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~---- 303 (536)
T KOG4648|consen 229 QGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPD---- 303 (536)
T ss_pred cchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcc----
Confidence 123455566677777777776555544443333233 556666677777877777777666654 11
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHhchhhcc
Q 004243 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGL 582 (766)
Q Consensus 551 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l 582 (766)
-..++......+...++...++.++
T Consensus 304 -------~s~~~~A~T~~~~~~E~K~~~~T~~ 328 (536)
T KOG4648|consen 304 -------TSGPPKAETIAKTSKEVKPTKQTAV 328 (536)
T ss_pred -------cCCCchhHHHHhhhhhcCcchhhee
Confidence 1234444555556666666665553
No 155
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=5.6e-07 Score=80.26 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=21.5
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
.++++.+|..+...|+.++|...|+-++..
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 366777777777777777777777776665
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.6e-07 Score=87.18 Aligned_cols=110 Identities=21% Similarity=0.077 Sum_probs=55.4
Q ss_pred HHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Q 004243 640 MTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD---QKEVEAVEELSKAIAFKP 712 (766)
Q Consensus 640 ~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p 712 (766)
++.-+..+|++..-|..+| ..|++..|...|.+++++.|+++..+..+|.++..+ ....+|...+++++..+|
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 3333444444444444444 234444444444444444555555555555544433 233455555666666665
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChh
Q 004243 713 DL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHME 749 (766)
Q Consensus 713 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 749 (766)
++ ...+.+|..+++.|++.+|+..++..++..|.+..
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 55 34445555666666666666666666655554433
No 157
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.73 E-value=2.3e-07 Score=90.27 Aligned_cols=114 Identities=12% Similarity=0.055 Sum_probs=87.3
Q ss_pred HHHHHHHHHH-HHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 004243 618 RAHQGLARVY-YLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 696 (766)
Q Consensus 618 ~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 696 (766)
..++..|..+ ...|++++|+..|++.+...|++.. .+.+++.+|.+|+..|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~---------------------------a~~A~y~LG~~y~~~g~ 195 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY---------------------------QPNANYWLGQLNYNKGK 195 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc---------------------------hHHHHHHHHHHHHHcCC
Confidence 3444455443 3456666666666666665554321 15788999999999999
Q ss_pred HHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q 004243 697 EVEAVEELSKAIAFKPDL----QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 758 (766)
Q Consensus 697 ~~~A~~~~~~al~~~p~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 758 (766)
+++|+..|+++++..|++ ..++.+|.++..+|++++|+..|+++++..|++..+.....++.
T Consensus 196 ~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~ 261 (263)
T PRK10803 196 KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLN 261 (263)
T ss_pred HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHh
Confidence 999999999999998875 45668899999999999999999999999999987776666553
No 158
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.73 E-value=1.1e-08 Score=97.07 Aligned_cols=231 Identities=13% Similarity=0.018 Sum_probs=161.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCC
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL 559 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~ 559 (766)
.-..|.-|+++|.|++|+.+|.+++..+|.++-.+.+.+.+|++...+..|...++.++.++..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y--------------- 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY--------------- 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH---------------
Confidence 45678999999999999999999999999999999999999999999999999999999877554
Q ss_pred CCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh--HHHHHHHHHHHHhccHHH--
Q 004243 560 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNELKA-- 635 (766)
Q Consensus 560 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~la~~~~~~g~~~~-- 635 (766)
..+|...|.+-..+|...+|.+.++.++++.+. +..-.++. .....+
T Consensus 165 -------------------------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~----i~Sl~E~~ 215 (536)
T KOG4648|consen 165 -------------------------VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLAR----INSLRERK 215 (536)
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHH----hcchHhhh
Confidence 345666777777788888888888888888543 22111111 111111
Q ss_pred -----------HHHHHHHHHH-hccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHH
Q 004243 636 -----------AYDEMTKLLE-KAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE 703 (766)
Q Consensus 636 -----------A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 703 (766)
|.+-..+++. ..+.+ . ....|.++.++.++..-+..+..+...-.+ +..+.+..++++|+..
T Consensus 216 I~~KsT~G~~~A~Q~~~Q~l~~K~~G~--~---Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~ 289 (536)
T KOG4648|consen 216 IATKSTPGFTPARQGMIQILPIKKPGY--K---FSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIE 289 (536)
T ss_pred HHhhcCCCCCccccchhhhccccCcch--h---hhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHH
Confidence 1111111110 00100 0 012355566666666655544444444444 6678888899999999
Q ss_pred HHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 004243 704 LSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 704 ~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 760 (766)
..+++..+|.. +..-..+.+-.-.|...++...++.++.+.|.+..+...+.+....
T Consensus 290 ~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~~~ 347 (536)
T KOG4648|consen 290 EVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKDTK 347 (536)
T ss_pred HHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhccc
Confidence 99998888877 4444556666667888999999999999999998887777665543
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.70 E-value=4.1e-07 Score=83.59 Aligned_cols=77 Identities=17% Similarity=0.084 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHH
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 552 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~ 552 (766)
...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.. ..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5678999999999999999999999999887653 4589999999999999999999999999999987 55554444
Q ss_pred H
Q 004243 553 I 553 (766)
Q Consensus 553 ~ 553 (766)
+
T Consensus 115 i 115 (168)
T CHL00033 115 I 115 (168)
T ss_pred H
Confidence 4
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.69 E-value=3.7e-08 Score=78.32 Aligned_cols=80 Identities=24% Similarity=0.226 Sum_probs=66.1
Q ss_pred hcCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 004243 660 YSDREMAKNDLNMATQLDPL--RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRD 736 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~ 736 (766)
.|+++.|+..++++++.+|. +...++.+|.++++.|++++|+..+++ .+.+|.+ ...+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45677777777777777774 466778899999999999999999999 7788877 5666789999999999999999
Q ss_pred HHHH
Q 004243 737 SQAA 740 (766)
Q Consensus 737 ~~~a 740 (766)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.69 E-value=4.5e-07 Score=83.56 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
....+++.+|..+...|++++|+..|+++++..|+. +.++..+|.++...|++++|+..++++++..|++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 445566677777777777777777777776655442 3466667777777777777777777777666654
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.67 E-value=3.5e-07 Score=84.29 Aligned_cols=115 Identities=20% Similarity=0.176 Sum_probs=87.8
Q ss_pred CCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch----HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc
Q 004243 508 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 583 (766)
Q Consensus 508 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 583 (766)
+.....++.+|..+...|++++|+..|+++++..|+. ..+..++.++...+ ++++|+..+.+++.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~ 100 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG-----------EHDKALEYYHQALE 100 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Confidence 3456678889999999999999999999999876653 57778888887777 88888888888865
Q ss_pred --c--chhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCH
Q 004243 584 --K--GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 651 (766)
Q Consensus 584 --~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 651 (766)
| ...+..+|.++...|+...+...++.++ ..+++|.+.+++++..+|++.
T Consensus 101 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 101 LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchhH
Confidence 2 4677788888888888777666555443 235677788888888877764
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.67 E-value=1.1e-06 Score=88.04 Aligned_cols=221 Identities=15% Similarity=0.102 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----C-chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHH
Q 004243 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-----S-EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 551 (766)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p-----~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 551 (766)
..+...|..|...|++++|...|.++....- . -...+...+.++.+. ++++|+..+++++.+.-..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~------- 107 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA------- 107 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-------
Confidence 4456678888888999999999888755421 1 133455556666555 8888888888888643221
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHh-CCHHHHHHHHHHHHcc----CC----hHHHHH
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-GKLDQAENCYINALDI----KH----TRAHQG 622 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~----~~----~~~~~~ 622 (766)
| ++..| +..+..+|.+|... |++++|+++|++|++. +. ...+..
T Consensus 108 ------G-----------~~~~a----------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 108 ------G-----------RFSQA----------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp ------T------------HHHH----------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ------C-----------cHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 2 33333 35688899999998 9999999999999987 21 246788
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHH
Q 004243 623 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 702 (766)
Q Consensus 623 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 702 (766)
+|.++...|++++|++.|++.....-++...- ......+...+.+++..|++..|..
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~-----------------------~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLK-----------------------YSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG-----------------------HHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccc-----------------------hhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999999988876432211000 0011344566778899999999999
Q ss_pred HHHHHHhcCCCh---HHHH---HHHHHHHH--cCCHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 004243 703 ELSKAIAFKPDL---QMLH---LRAAFYES--IGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 759 (766)
Q Consensus 703 ~~~~al~~~p~~---~~~~---~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 759 (766)
.+++....+|.. .... .+-.++.. ...+.+|+..|.+.-++||= -...|-++++
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w---~~~~l~~~k~ 279 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW---KTKMLLKIKK 279 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH---HHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH---HHHHHHHHHh
Confidence 999999998855 2222 33344432 35688888888877766543 3344444443
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.67 E-value=1.6e-06 Score=86.86 Aligned_cols=176 Identities=17% Similarity=0.121 Sum_probs=120.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHH
Q 004243 516 YEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIY 595 (766)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~ 595 (766)
..|..|...|++++|.+.|.++....-.. + ....| +..+...+.++
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~-------------~-----------~~~~A----------a~~~~~Aa~~~ 85 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKL-------------G-----------DKFEA----------AKAYEEAANCY 85 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHT-------------T------------HHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHc-------------C-----------CHHHH----------HHHHHHHHHHH
Confidence 34667888899999999998887643221 1 11111 23455666666
Q ss_pred HHhCCHHHHHHHHHHHHcc----CC----hHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHH
Q 004243 596 VECGKLDQAENCYINALDI----KH----TRAHQGLARVYYLK-NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMA 666 (766)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~----~~----~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A 666 (766)
... ++++|+.+|++++.+ +. ...+..+|.+|... |++++|++.|+++++........ ..
T Consensus 86 k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~----------~~- 153 (282)
T PF14938_consen 86 KKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP----------HS- 153 (282)
T ss_dssp HHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H----------HH-
T ss_pred Hhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh----------hh-
Confidence 555 999999999998876 22 24677888888888 88888888888887763322111 00
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHH-HHHHHHHHHcCCHHHHHHHHH
Q 004243 667 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-------QML-HLRAAFYESIGDLTSAIRDSQ 738 (766)
Q Consensus 667 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~-~~la~~~~~~g~~~~A~~~~~ 738 (766)
....+..+|.++...|+|++|++.|+++....-++ ..+ ...+.|+...||...|...++
T Consensus 154 -------------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 154 -------------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp -------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 13556788999999999999999999998753222 122 356889999999999999999
Q ss_pred HHHccCCCChhH
Q 004243 739 AALCLDPNHMET 750 (766)
Q Consensus 739 ~al~~~p~~~~~ 750 (766)
+....+|.....
T Consensus 221 ~~~~~~~~F~~s 232 (282)
T PF14938_consen 221 RYCSQDPSFASS 232 (282)
T ss_dssp HHGTTSTTSTTS
T ss_pred HHHhhCCCCCCc
Confidence 999999976443
No 165
>PRK11906 transcriptional regulator; Provisional
Probab=98.67 E-value=1.2e-06 Score=89.07 Aligned_cols=140 Identities=13% Similarity=-0.006 Sum_probs=110.0
Q ss_pred HHHHHHHHHhh---hhHHHHHHHHHHHH---hccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhccc--Cc
Q 004243 388 LELRAWLFIAA---DDYESALRDTLALL---ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSV--DD 459 (766)
Q Consensus 388 ~~~~a~~~~~~---g~~~~A~~~~~~al---~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 459 (766)
++++|...+.. ...+.|+..|.+++ .++|+... ++..++.++..... ..|... +-
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~------a~~~lA~~h~~~~~-----------~g~~~~~~~~ 320 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTE------CYCLLAECHMSLAL-----------HGKSELELAA 320 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHH------HHHHHHHHHHHHHH-----------hcCCCchHHH
Confidence 34455555443 34567888888888 77777773 66666666644311 111110 11
Q ss_pred cccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 460 IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 460 ~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
..++....++++++|.++.++..+|.++...++++.|...|++|+.++|+.+.+++..|.+....|+.++|++.++++++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 12256678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccch
Q 004243 540 IERTF 544 (766)
Q Consensus 540 ~~p~~ 544 (766)
++|.-
T Consensus 401 LsP~~ 405 (458)
T PRK11906 401 LEPRR 405 (458)
T ss_pred cCchh
Confidence 99987
No 166
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.7e-07 Score=88.41 Aligned_cols=148 Identities=17% Similarity=0.087 Sum_probs=102.2
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 335 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (766)
+......|+.|++.|+|..|...|++|+..=........ ...+...+. ....+..++.++++..+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-----ee~~~~~~~----------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE-----EEQKKAEAL----------KLACHLNLAACYLKLKE 272 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH-----HHHHHHHHH----------HHHHhhHHHHHHHhhhh
Confidence 445567899999999999999999999876111111100 000000111 11234556666776777
Q ss_pred H--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHH-HHHHHHHH
Q 004243 336 E--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYES-ALRDTLAL 411 (766)
Q Consensus 336 ~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~-A~~~~~~a 411 (766)
+ |+...+++++.+|+|..++|.+|.++..+|+|+.|+..|++++++.|++..... +..+..+...+.+ ..+.|..+
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 899999999999999999999999999999999999999999999996665555 6666555544444 46778888
Q ss_pred HhccCCc
Q 004243 412 LALESNY 418 (766)
Q Consensus 412 l~~~p~~ 418 (766)
+..-+..
T Consensus 353 F~k~~~~ 359 (397)
T KOG0543|consen 353 FAKLAEE 359 (397)
T ss_pred hhccccc
Confidence 7754433
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.65 E-value=2.9e-07 Score=75.47 Aligned_cols=96 Identities=24% Similarity=0.308 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Q 004243 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTN 558 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~ 558 (766)
+++.+|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-------------- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--------------
Confidence 466778888888888888888888888888877788888888888888888888888888777665
Q ss_pred CCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 559 LDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 559 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
...+..+|.++...|++++|...+.+++..
T Consensus 68 --------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 68 --------------------------AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred --------------------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 234566666667777777777777666654
No 168
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.3e-05 Score=74.41 Aligned_cols=259 Identities=15% Similarity=0.052 Sum_probs=171.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCCh
Q 004243 485 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 564 (766)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 564 (766)
.-++..|+|..++..-++.-.. +...+....+...|..+|.+..-+......- .|...+...++..+.. ++..
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~----e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLEL----ESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhC----cchh
Confidence 3455678898888887765554 3667788888888988888765544333222 1111222222222211 1111
Q ss_pred HHHHHHHHHHHhchhhccccc-hhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004243 565 TYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKL 643 (766)
Q Consensus 565 ~~~~~~~~~A~~~~~~~l~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 643 (766)
...+..+.+-+. ....... .....-|.++...|++++|........ .-++...-..++.++.+.+-|...++++
T Consensus 89 ~~~~~~l~E~~a--~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~---~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 89 KSILASLYELVA--DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE---NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHH--hhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111000 0001111 334455788999999999999887732 3344455566778889999999999999
Q ss_pred HHhccCC-----HHHHHHHh-hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHH-
Q 004243 644 LEKAQYS-----ASAFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM- 716 (766)
Q Consensus 644 l~~~p~~-----~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 716 (766)
.+.+.+. +.+|..++ .-++..+|.-+|+..-+..|..+......+.+.+.+|+|++|...++.++..+++++.
T Consensus 164 q~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 164 QQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred HccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 8876553 34566655 3345789999999998877778999999999999999999999999999999998854
Q ss_pred HHHHHHHHHHcCCHHHHH-HHHHHHHccCCCChhHHHHHH
Q 004243 717 LHLRAAFYESIGDLTSAI-RDSQAALCLDPNHMETLDLYN 755 (766)
Q Consensus 717 ~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~ 755 (766)
+-++-.+-...|...++. +...+....+|+++-+...-+
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~e 283 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNE 283 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 447777777788775554 466777788999987765543
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.65 E-value=1.1e-07 Score=75.65 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHHHhcCCC--chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHH
Q 004243 490 LNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 567 (766)
Q Consensus 490 ~g~~~~A~~~~~~a~~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~ 567 (766)
.|+++.|+..++++++..|. +...++.+|.++++.|++++|+..+++ ...+|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~----------------------- 57 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN----------------------- 57 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-----------------------
Confidence 57889999999999988885 466677789999999999999999988 6666654
Q ss_pred HHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHH
Q 004243 568 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINA 611 (766)
Q Consensus 568 ~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (766)
....+.+|.++..+|++++|+..|+++
T Consensus 58 -----------------~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 -----------------PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp -----------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 334556688888888888888887764
No 170
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=2.2e-07 Score=81.67 Aligned_cols=118 Identities=25% Similarity=0.322 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHH
Q 004243 619 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV 698 (766)
Q Consensus 619 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 698 (766)
.+-.-|.-++..|++++|...|..+++..|....- .....|.+.|.+++++++++
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e-------------------------~rsIly~Nraaa~iKl~k~e 151 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTE-------------------------ERSILYSNRAAALIKLRKWE 151 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH-------------------------HHHHHHhhhHHHHHHhhhHH
Confidence 34445667778888888888888888777654331 11446778899999999999
Q ss_pred HHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q 004243 699 EAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 761 (766)
Q Consensus 699 ~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 761 (766)
.|+..+.++|+++|.+ .++..+|.+|.++..+++|++.|+++++++|...++.....++..+.
T Consensus 152 ~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 152 SAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 9999999999999999 45557899999999999999999999999999998888877765544
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.64 E-value=8.9e-07 Score=95.21 Aligned_cols=145 Identities=11% Similarity=0.050 Sum_probs=107.5
Q ss_pred HHHHHHHHHhh---hhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCcc-ccH
Q 004243 388 LELRAWLFIAA---DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI-GSL 463 (766)
Q Consensus 388 ~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~l 463 (766)
++++|.-+... ++...|+..|+++++++|++.. ++..++..+.....+..... .+. ...
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~------a~A~la~~~~~~~~~~~~~~-----------~~l~~a~ 404 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY------AQAEKALADIVRHSQQPLDE-----------KQLAALS 404 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHHHhcCCccH-----------HHHHHHH
Confidence 44477766654 4478899999999999999884 56666665544333321000 000 002
Q ss_pred HHHHHHHH--cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc
Q 004243 464 AVINQMLI--NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (766)
Q Consensus 464 ~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (766)
....+++. .+|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|++.|++|+.++
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 22344444 3777788899999999999999999999999999999 48899999999999999999999999999999
Q ss_pred cchHHHHHH
Q 004243 542 RTFEAFFLK 550 (766)
Q Consensus 542 p~~~~~~~~ 550 (766)
|.++.|+..
T Consensus 484 P~~pt~~~~ 492 (517)
T PRK10153 484 PGENTLYWI 492 (517)
T ss_pred CCCchHHHH
Confidence 998544433
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=98.63 E-value=6.1e-07 Score=77.98 Aligned_cols=108 Identities=6% Similarity=-0.092 Sum_probs=96.5
Q ss_pred HHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHH
Q 004243 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEA 546 (766)
Q Consensus 467 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 546 (766)
..+..+.++..+..+..|.-++..|++++|...|+-....+|.+++.+..+|.++..+++|++|+..|..+..+++++
T Consensus 27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-- 104 (165)
T PRK15331 27 KDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-- 104 (165)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--
Confidence 344445566677888999999999999999999999999999999999999999999999999999999999888776
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 547 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 547 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
+...+..|.+++..|+.+.|..+|+.++..
T Consensus 105 --------------------------------------p~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 105 --------------------------------------YRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred --------------------------------------CCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 556788999999999999999999999885
No 173
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.63 E-value=4e-07 Score=78.34 Aligned_cols=101 Identities=11% Similarity=-0.017 Sum_probs=89.3
Q ss_pred chhHHHHHHHHhccCcH--HHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----HHHHHH
Q 004243 320 PTGWMYQERSLYNLGRE--KIVDLNYASELDPTL---SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLEL 390 (766)
Q Consensus 320 ~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~ 390 (766)
+..++..|..+...+++ |+..|++++..+|++ +.+++.+|.++...|++++|+..+++++...|+ +..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 35677788888888886 999999999999887 568999999999999999999999999998885 345666
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCCccc
Q 004243 391 RAWLFIAADDYESALRDTLALLALESNYMM 420 (766)
Q Consensus 391 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 420 (766)
+|.++...|++++|+..+++++...|++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999999999999999999999999873
No 174
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.63 E-value=1.4e-06 Score=77.68 Aligned_cols=121 Identities=20% Similarity=0.149 Sum_probs=88.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCC
Q 004243 487 LLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 563 (766)
Q Consensus 487 ~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~ 563 (766)
....++...+...++......|+. ..+.+.+|.+++..|++++|+..|++++...|+.. +
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-l---------------- 83 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-L---------------- 83 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-H----------------
Confidence 335788888888888888888877 55667788888888999999998888888665530 0
Q ss_pred hHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHhccHHHHHHHHHH
Q 004243 564 STYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTK 642 (766)
Q Consensus 564 ~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 642 (766)
...+...++.++...|++++|+..++..... -.+.++..+|.++...|++++|...|++
T Consensus 84 --------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 84 --------------------KPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0234667788888888888888888663322 2345677788888888888888888877
Q ss_pred HH
Q 004243 643 LL 644 (766)
Q Consensus 643 ~l 644 (766)
++
T Consensus 144 Al 145 (145)
T PF09976_consen 144 AL 145 (145)
T ss_pred hC
Confidence 63
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.63 E-value=6.7e-07 Score=82.15 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHccCCC---HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhch
Q 004243 367 QIRAAISEIDRIIVFKLS---VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSP 443 (766)
Q Consensus 367 ~~~~A~~~~~~al~~~~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~ 443 (766)
++..+...+...++..+. ...++.+|.++...|++++|+..|++++.+.|+...
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~----------------------- 70 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD----------------------- 70 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh-----------------------
Confidence 344455555444444442 223445788888888888888888888877554321
Q ss_pred HhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHH-
Q 004243 444 ADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY- 522 (766)
Q Consensus 444 A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~- 522 (766)
.+.++..+|.++...|++++|+..+++++...|.....+..+|.++.
T Consensus 71 --------------------------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 71 --------------------------------RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred --------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 23467788888888888888888888888888888888888888887
Q ss_pred ------HCCCHH-------HHHHHHHHHHccccch
Q 004243 523 ------DTGHRE-------EALSRAEKSISIERTF 544 (766)
Q Consensus 523 ------~~g~~~-------~A~~~~~~al~~~p~~ 544 (766)
..|+++ +|+..+++++..+|+.
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 667766 4445555556666654
No 176
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.63 E-value=1.1e-06 Score=78.29 Aligned_cols=80 Identities=24% Similarity=0.150 Sum_probs=56.5
Q ss_pred cCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLR---TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRD 736 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~ 736 (766)
|++++|...|++++...|+. +.+...+|.++...|++++|+..++.+- -.+-. ..+..+|.++...|++++|+..
T Consensus 62 g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 62 GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44444444444444433322 4567889999999999999999997632 22222 3344789999999999999999
Q ss_pred HHHHH
Q 004243 737 SQAAL 741 (766)
Q Consensus 737 ~~~al 741 (766)
|++|+
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 99885
No 177
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=3.6e-05 Score=81.96 Aligned_cols=66 Identities=24% Similarity=0.229 Sum_probs=44.2
Q ss_pred hcCCC-CchhHHHHHHHHHhCCCHHHHHHHHHH------HHhc----------------CC------Ch----HHHHHHH
Q 004243 675 QLDPL-RTYPYRYRAAVLMDDQKEVEAVEELSK------AIAF----------------KP------DL----QMLHLRA 721 (766)
Q Consensus 675 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~----------------~p------~~----~~~~~la 721 (766)
.++|. +|..+..-+..+....+|++|...+-. |+++ .| +. ..+..+|
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 45553 466666777777788888888876543 3322 11 11 1233679
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 004243 722 AFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~a 740 (766)
.+..++|.|..|.+-|.+|
T Consensus 1153 e~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHhccchHHHHHHHhhh
Confidence 9999999999998888765
No 178
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=1.8e-05 Score=89.12 Aligned_cols=208 Identities=16% Similarity=0.103 Sum_probs=150.4
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCch----hhHHHHHHHHHHCCCHHHHHHHHHHH
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-SSSEH----ERLVYEGWILYDTGHREEALSRAEKS 537 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (766)
...+.+.+..+|+..-.|...-..++..++.++|.+..++|+.. ++... ..|..+-.+...-|.-+.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34455555555555555555555555555556666555555542 22221 12222222223334334444445444
Q ss_pred HccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--C
Q 004243 538 ISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--K 615 (766)
Q Consensus 538 l~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 615 (766)
.+.. .+-..|..|..+|...+++++|.+.|+..++. +
T Consensus 1524 cqyc-----------------------------------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q 1562 (1710)
T KOG1070|consen 1524 CQYC-----------------------------------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ 1562 (1710)
T ss_pred HHhc-----------------------------------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence 4321 12356888899999999999999999999988 4
Q ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccC--CHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 004243 616 HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY--SASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAA 689 (766)
Q Consensus 616 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 689 (766)
....|..+|..++.+++-++|...+.++++.-|. +.......+ .+|+.+.+...|+-.+...|.....|.-+..
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 6789999999999999999999999999999998 445544444 5699999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhcC
Q 004243 690 VLMDDQKEVEAVEELSKAIAFK 711 (766)
Q Consensus 690 ~~~~~g~~~~A~~~~~~al~~~ 711 (766)
.-.+.|+.+.+...|++++.+.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998874
No 179
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.59 E-value=6.2e-08 Score=102.04 Aligned_cols=69 Identities=17% Similarity=0.102 Sum_probs=56.9
Q ss_pred CCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCC------------CeEEecCCCCCHHHHHHHHHHhhcC
Q 004243 51 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKR------------KTIDFSHDGVSVEGLRAVEVYTRTS 118 (766)
Q Consensus 51 ~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~------------~~i~~~~~~~~~~~~~~~l~~~yt~ 118 (766)
-+.+.||||.||+..|+|||.||++||++|+.+|...-+.+.. ..|.+ ++++|..|+.+|.||||+
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~v--e~i~p~mfe~lL~~iYtd 632 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRV--EDIPPLMFEILLHYIYTD 632 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeee--ccCCHHHHHHHHHHHhcc
Confidence 3456799999999999999999999999999999654333222 25557 889999999999999999
Q ss_pred CCC
Q 004243 119 RVD 121 (766)
Q Consensus 119 ~~~ 121 (766)
.+-
T Consensus 633 t~~ 635 (1267)
T KOG0783|consen 633 TLL 635 (1267)
T ss_pred ccc
Confidence 653
No 180
>PRK11906 transcriptional regulator; Provisional
Probab=98.59 E-value=2.4e-06 Score=86.84 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=128.8
Q ss_pred HHHHHHHhccCcH-----HHHHHHHHH---hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 004243 324 MYQERSLYNLGRE-----KIVDLNYAS---ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLF 395 (766)
Q Consensus 324 ~~~~~~~~~~~~~-----A~~~~~~al---~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~ 395 (766)
+.+|...+..+.. |+..|.+++ +++|..+.+|-.+|.|++..- .+|+.-
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~-----------------------~~g~~~ 315 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA-----------------------LHGKSE 315 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH-----------------------HhcCCC
Confidence 5566666555542 888899999 888988888888888876531 012211
Q ss_pred HhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCC
Q 004243 396 IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG 475 (766)
Q Consensus 396 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~ 475 (766)
...+..+|.+..+++++++|.|+. ++..+|.+....++++.|. ..+++++.++|+
T Consensus 316 -~~~~~~~a~~~A~rAveld~~Da~------a~~~~g~~~~~~~~~~~a~------------------~~f~rA~~L~Pn 370 (458)
T PRK11906 316 -LELAAQKALELLDYVSDITTVDGK------ILAIMGLITGLSGQAKVSH------------------ILFEQAKIHSTD 370 (458)
T ss_pred -chHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHhhcchhhHH------------------HHHHHHhhcCCc
Confidence 334667888889999999999995 8888888888888877774 345899999999
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHH-HHHCCCHHHHHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI-LYDTGHREEALSRAEKSI 538 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al 538 (766)
.+.+|+..|.+..-.|+.++|++.++++++++|....+-...-++ .+-....++|++.|-+--
T Consensus 371 ~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 371 IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 999999999999999999999999999999999876655544444 455566888888886544
No 181
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=1.3e-05 Score=90.29 Aligned_cols=231 Identities=11% Similarity=0.013 Sum_probs=187.0
Q ss_pred CCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcc-ccchHHHHHHHHHHHhcCCCCCChHHHHH
Q 004243 491 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-ERTFEAFFLKAYILADTNLDPESSTYVIQ 569 (766)
Q Consensus 491 g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 569 (766)
++-.+..+.|++.+..+|+....|..+-..+.+.++.++|.+.+++|+.. ++..
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE------------------------- 1492 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE------------------------- 1492 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch-------------------------
Confidence 33445667888889999999999999999999999999999999999963 3322
Q ss_pred HHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Q 004243 570 LLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 648 (766)
Q Consensus 570 ~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 648 (766)
+. ++...|..+-++...-|.-+.-.+.|++|.+. ++...+..|..+|...+++++|.++++.+++...
T Consensus 1493 ---ee--------EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1493 ---EE--------EKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred ---hH--------HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 00 01234544445555556677788899999998 4557899999999999999999999999999988
Q ss_pred CCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 004243 649 YSASAFEKRS----EYSDREMAKNDLNMATQLDPL--RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRA 721 (766)
Q Consensus 649 ~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la 721 (766)
+....|...+ ...+.+.|...+.+|++.-|. +.......|.+-++.|+.+.+...|+-.+...|.- ..|....
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 8888888888 345568899999999999997 67788889999999999999999999999999988 5666778
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 722 AFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
..-.+.|+.+.+...|++++.+.=.-..+...+.+-
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 888889999999999999998865545555544443
No 182
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.59 E-value=5.1e-07 Score=73.99 Aligned_cols=98 Identities=31% Similarity=0.358 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHH
Q 004243 619 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV 698 (766)
Q Consensus 619 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 698 (766)
+++.+|.++...|++++|+..++++++. .|.++.++..+|.++...|+++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL------------------------------DPDNADAYYNLAAAYYKLGKYE 51 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc------------------------------CCccHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665555555555444 4444456667777777777888
Q ss_pred HHHHHHHHHHhcCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 699 EAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 699 ~A~~~~~~al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 746 (766)
+|+..+++++...|... .+..+|.++...|++++|...+.++++.+|+
T Consensus 52 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 52 EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 88888888777777764 4557777787788888888888887777763
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.57 E-value=1e-05 Score=70.59 Aligned_cols=150 Identities=21% Similarity=0.175 Sum_probs=119.2
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcC
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSD 662 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 662 (766)
.-.+.+|..+.+.|++.+|...|++++.- +++..+.+++++.+..+++..|...+++..+.+|..
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~------------ 157 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF------------ 157 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc------------
Confidence 34678899999999999999999999986 677899999999999999999999999888776532
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHH----H
Q 004243 663 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDS----Q 738 (766)
Q Consensus 663 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~----~ 738 (766)
..+.....+|.++...|++.+|...|+.++...|+...-...+..+.++|+..+|...+ +
T Consensus 158 ----------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 158 ----------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred ----------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34667788899999999999999999999999999987777888888999877766555 4
Q ss_pred HHHccCCCCh-hHHHHHHHHHHhhhh
Q 004243 739 AALCLDPNHM-ETLDLYNRARDQASH 763 (766)
Q Consensus 739 ~al~~~p~~~-~~~~~l~~~~~~~~~ 763 (766)
.+.+-.|... .....+..+...+++
T Consensus 222 ~~~r~~~H~rkh~reW~~~A~~~~~q 247 (251)
T COG4700 222 TAKRSRPHYRKHHREWIKTANERLKQ 247 (251)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 5555556543 334445555444443
No 184
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=2.1e-06 Score=75.71 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=70.8
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccC
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (766)
.+..+-.-|+-++..|+|++|..-|..|++..|....-.-.-+|.+++.+.-.+. ..
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~-----------------------k~ 150 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR-----------------------KW 150 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh-----------------------hH
Confidence 4455667899999999999999999999999876554322223333333222222 11
Q ss_pred cHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 384 (766)
Q Consensus 335 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~ 384 (766)
..||....++|+++|++..++..+|.+|.++..|++|+..|+++++.+|.
T Consensus 151 e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 151 ESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 23666677777777777777776677777777777777777777766663
No 185
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.54 E-value=0.0028 Score=69.21 Aligned_cols=398 Identities=14% Similarity=0.000 Sum_probs=218.8
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Q 004243 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALE 415 (766)
Q Consensus 336 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 415 (766)
+|..+++..-...|++...+-.+-.+|..+|++++|...|++++..+|+.+..+.+=.+|.+.+.|.+-.+.--+.-+..
T Consensus 61 ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~ 140 (932)
T KOG2053|consen 61 EALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF 140 (932)
T ss_pred hHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46666665556666777777777888888888888888888888888874444446666666666665554444444566
Q ss_pred CCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcC-CCChhH-HHHHHHHHHhcCCH
Q 004243 416 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFL-RFRQSLLLLRLNCQ 493 (766)
Q Consensus 416 p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~-p~~~~~-~~~la~~~~~~g~~ 493 (766)
|+++. --|..+..+...+...+.+..-+ +-. -+-...++.++.. +-...+ ....-.++..+|++
T Consensus 141 pk~~y-----yfWsV~Slilqs~~~~~~~~~~i--~l~-------LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 141 PKRAY-----YFWSVISLILQSIFSENELLDPI--LLA-------LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred Ccccc-----hHHHHHHHHHHhccCCcccccch--hHH-------HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 77663 13333444444433333332100 000 0011223344433 111111 11223456678999
Q ss_pred HHHHHHHH--HHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHH-HHHHHHhcCCCC-CChHHHH
Q 004243 494 KAAMRCLR--LARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL-KAYILADTNLDP-ESSTYVI 568 (766)
Q Consensus 494 ~~A~~~~~--~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~-~~~~l~~~~~~~-~~~~~~~ 568 (766)
++|...+. .+-...+.+.......+..+...++|.+-.+...+++...+++ ..+.. .-.++......+ +......
T Consensus 207 ~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~ 286 (932)
T KOG2053|consen 207 QEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLS 286 (932)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhh
Confidence 99999985 3333444445455566778888999999999999999998886 33222 222222222111 1222223
Q ss_pred HHHHHHHhchhhccc-----cchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--------------ChH-----------
Q 004243 569 QLLEEALRCPSDGLR-----KGQALNNLGSIYVECGKLDQAENCYINALDIK--------------HTR----------- 618 (766)
Q Consensus 569 ~~~~~A~~~~~~~l~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------~~~----------- 618 (766)
+..+..++..++.+. |-.++..+-.-+...|+.+++...|-+-.... +++
T Consensus 287 ~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~ 366 (932)
T KOG2053|consen 287 KSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVL 366 (932)
T ss_pred hhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhc
Confidence 344444444444332 22444444444456677777666554322210 000
Q ss_pred -------------HHHHHHHHHHHhccHH-----HHHHHHHHHH-------Hh----ccC---CHHHHHHHh--------
Q 004243 619 -------------AHQGLARVYYLKNELK-----AAYDEMTKLL-------EK----AQY---SASAFEKRS-------- 658 (766)
Q Consensus 619 -------------~~~~la~~~~~~g~~~-----~A~~~~~~~l-------~~----~p~---~~~~~~~~~-------- 658 (766)
.+...-.+....|.++ .-...+.+.. +. .|. ..+.+..++
T Consensus 367 ~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~ 446 (932)
T KOG2053|consen 367 ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLW 446 (932)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHH
Confidence 1111122222333221 1122222222 11 111 122222222
Q ss_pred ----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHcCCHHHH
Q 004243 659 ----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI-AFKPDLQMLHLRAAFYESIGDLTSA 733 (766)
Q Consensus 659 ----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~la~~~~~~g~~~~A 733 (766)
..+..-+|+..++..+..+|.++..-..+-.+|...|-+..|.+.|...= +.=..+..-|.+-..+...|++..|
T Consensus 447 rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~ 526 (932)
T KOG2053|consen 447 RKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFA 526 (932)
T ss_pred HhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhH
Confidence 23455799999999999999999999999999999999999999997541 1111222233444455556788888
Q ss_pred HHHHHHHHccCCCC
Q 004243 734 IRDSQAALCLDPNH 747 (766)
Q Consensus 734 ~~~~~~al~~~p~~ 747 (766)
...+...+.+..++
T Consensus 527 s~~~~~~lkfy~~~ 540 (932)
T KOG2053|consen 527 SNTFNEHLKFYDSS 540 (932)
T ss_pred HHHHHHHHHHHhhh
Confidence 88888777775443
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.54 E-value=1.9e-07 Score=70.84 Aligned_cols=66 Identities=27% Similarity=0.257 Sum_probs=51.0
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 692 MDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 692 ~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
++.|++++|+..|++++..+|++ ...+.+|.++.+.|++++|...+++++..+|+++.++..++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46788888888888888888877 4455788888888888888888888888888887777776653
No 187
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.53 E-value=3.6e-07 Score=70.51 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=61.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 688 AAVLMDDQKEVEAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 688 a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
..+|...+++++|++++++++..+|+++. ++.+|.++..+|++.+|++.++++++..|+++++......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 56889999999999999999999999854 55899999999999999999999999999998887766554
No 188
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.53 E-value=0.00012 Score=71.84 Aligned_cols=217 Identities=26% Similarity=0.227 Sum_probs=167.9
Q ss_pred cCCHHHHHHHHHHHHhcCCC--chhhHHHHHHHHHHCCCHHHHHHHHHHHHc--cccchHHHHHHHHHHHhcCCCCCChH
Q 004243 490 LNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYDTGHREEALSRAEKSIS--IERTFEAFFLKAYILADTNLDPESST 565 (766)
Q Consensus 490 ~g~~~~A~~~~~~a~~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~l~~~~~~~~~~~ 565 (766)
.+.+..+...+.......+. ........+..+...+++..+...+...+. ..+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 94 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL--------------------- 94 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch---------------------
Confidence 46677777778777777665 367778888888888888888888888775 23332
Q ss_pred HHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHH-HHHHhccHHHHHHHHHH
Q 004243 566 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLAR-VYYLKNELKAAYDEMTK 642 (766)
Q Consensus 566 ~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~-~~~~~g~~~~A~~~~~~ 642 (766)
...+...|..+...+++..++..+.+++... +.......+. ++...|+++.|...+.+
T Consensus 95 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 155 (291)
T COG0457 95 -------------------AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155 (291)
T ss_pred -------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456677777777888888888888888763 2234444555 78888888888888888
Q ss_pred HHHhccC---CHHHHHHHh----hhcCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 643 LLEKAQY---SASAFEKRS----EYSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 643 ~l~~~p~---~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
++...|. ....+...+ ..++++.++..+.+++...+. ....+..++..+...+++++|+..+..++...|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred HHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence 8776652 333333333 357889999999999999888 68999999999999999999999999999999984
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 715 -QMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 715 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 746 (766)
..+...+..+...|++++|...+.+++...|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 45556677777778899999999999999997
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=98.53 E-value=2.1e-06 Score=74.73 Aligned_cols=106 Identities=14% Similarity=0.018 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 004243 619 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD 694 (766)
Q Consensus 619 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 694 (766)
..+..|.-++..|++++|...|+-+...+|.++..|..+| ..+++++|+..|..+..+++++|.+.+..|.+++..
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 4455555555566665555555555555554444444444 234444555555555555666677777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004243 695 QKEVEAVEELSKAIAFKPDLQMLHLRAAFYE 725 (766)
Q Consensus 695 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~ 725 (766)
|+.+.|..+|+.+++ .|.+..+..++..+.
T Consensus 119 ~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L 148 (165)
T PRK15331 119 RKAAKARQCFELVNE-RTEDESLRAKALVYL 148 (165)
T ss_pred CCHHHHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence 777777777777766 455555555444443
No 190
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=2.7e-05 Score=82.92 Aligned_cols=291 Identities=17% Similarity=0.040 Sum_probs=162.4
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHH------------HHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcc
Q 004243 352 SFPYKYRAVAKMEEGQIRAAISEID------------RIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (766)
Q Consensus 352 ~~~~~~~a~~~~~~g~~~~A~~~~~------------~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 419 (766)
...|-++|....+.++.+-|.-++- ++.+ +|+ +.-...|.+...+|..++|+..|++.-.
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 3567777777777666666655443 2221 221 1111256667788999999999887643
Q ss_pred cccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004243 420 MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRC 499 (766)
Q Consensus 420 ~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 499 (766)
+.++..+|...|.|++|.+..+.-++ -.-...|++.|.-+...++.+.|+++
T Consensus 829 --------~DLlNKlyQs~g~w~eA~eiAE~~DR--------------------iHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 829 --------YDLLNKLYQSQGMWSEAFEIAETKDR--------------------IHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred --------HHHHHHHHHhcccHHHHHHHHhhccc--------------------eehhhhHHHHHHHHHhhccHHHHHHH
Confidence 34566778888888888533211111 11234577788888888899999999
Q ss_pred HHHHH----------hcCCC----------chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCC
Q 004243 500 LRLAR----------NHSSS----------EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL 559 (766)
Q Consensus 500 ~~~a~----------~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~ 559 (766)
|+++- ..+|. ++..|...|..+...|+.+.|+.+|..+-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------------------- 940 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------------------- 940 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------------------
Confidence 88742 11221 123333444445555555555555544432
Q ss_pred CCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHH
Q 004243 560 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDE 639 (766)
Q Consensus 560 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~ 639 (766)
|+.+..+..-+|+.++|...-++ .++..+.+.+|+.|...|+..+|+..
T Consensus 941 ----------------------------~fs~VrI~C~qGk~~kAa~iA~e---sgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 941 ----------------------------YFSMVRIKCIQGKTDKAARIAEE---SGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred ----------------------------hhhheeeEeeccCchHHHHHHHh---cccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55566666667777777654332 24555777788888888888888877
Q ss_pred HHHHHHh------ccCC--HHHHHHHh---hhcCHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHhCCCHHHHHHHHHH-
Q 004243 640 MTKLLEK------AQYS--ASAFEKRS---EYSDREMAKNDLNMATQLDPLRTYPYRY-RAAVLMDDQKEVEAVEELSK- 706 (766)
Q Consensus 640 ~~~~l~~------~p~~--~~~~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~- 706 (766)
|.++-.. ...+ .+-+.+++ .-.+.-.|..+|+.. ..+.. --.+|.+.|.+.+|++.-=+
T Consensus 990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~--------g~~~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL--------GGYAHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc--------chhhhHHHHHHHhhcchHHHHHHHHhh
Confidence 7766432 1111 11122222 112223333444431 11111 12245556666666654221
Q ss_pred ----H-----HhcCCCh-HHHH-HHHHHHHHcCCHHHHHHHH
Q 004243 707 ----A-----IAFKPDL-QMLH-LRAAFYESIGDLTSAIRDS 737 (766)
Q Consensus 707 ----a-----l~~~p~~-~~~~-~la~~~~~~g~~~~A~~~~ 737 (766)
+ -.++|+. +.+. .-+..+....+|++|+..+
T Consensus 1062 qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 1235655 5555 4478888888899887754
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.51 E-value=1.6e-05 Score=74.33 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=135.3
Q ss_pred cchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-----ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHH---HHH
Q 004243 584 KGQALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS---AFE 655 (766)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~ 655 (766)
|+..+++-|...+..|++++|+..|+...... ...+...++.++++.+++++|+...++-+...|+++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999998763 2368899999999999999999999999999998766 455
Q ss_pred HHhh------------hcCHHHHHHHHHHHHhcCCCCc-----------------hhHHHHHHHHHhCCCHHHHHHHHHH
Q 004243 656 KRSE------------YSDREMAKNDLNMATQLDPLRT-----------------YPYRYRAAVLMDDQKEVEAVEELSK 706 (766)
Q Consensus 656 ~~~~------------~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~ 706 (766)
.+|. ..-..+|+..|+..++..|+.. .--+..|..|.+.|.+..|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5551 1123788899999999999872 2234678899999999999999999
Q ss_pred HHhcCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCh
Q 004243 707 AIAFKPDL----QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 748 (766)
Q Consensus 707 al~~~p~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 748 (766)
+++..|+. +++..+..+|..+|-.++|...-.-.-.-.|+++
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99987765 4566889999999999999887665555567664
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.50 E-value=2.7e-06 Score=82.93 Aligned_cols=68 Identities=9% Similarity=-0.081 Sum_probs=41.5
Q ss_pred chHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCH----HHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcc
Q 004243 352 SFPYKYRAVAK-MEEGQIRAAISEIDRIIVFKLSV----DCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (766)
Q Consensus 352 ~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 419 (766)
...+|..|..+ ...|+|++|+..|++.++..|+. ..++.+|.+|+..|++++|+..|+++++..|+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 34555555554 44566666666666666666632 3455566666666666666666666666666555
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.48 E-value=0.00045 Score=67.84 Aligned_cols=287 Identities=15% Similarity=0.053 Sum_probs=156.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHH-
Q 004243 359 AVAKMEEGQIRAAISEIDRII---VFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL- 434 (766)
Q Consensus 359 a~~~~~~g~~~~A~~~~~~al---~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~- 434 (766)
|.+-.-.|+-..|.+.-.++- ..+..+....+-++.-.-.|+++.|.+-|+.++. +|..- .+-+.|..
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR-------llGLRgLyl 162 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR-------LLGLRGLYL 162 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH-------HHhHHHHHH
Confidence 445555666666666665543 2222333333456666677778887777776654 34332 11112221
Q ss_pred -HHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCc
Q 004243 435 -NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH---SSSE 510 (766)
Q Consensus 435 -~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~ 510 (766)
....|..+.|..+ -+++-...|.-+.++...-......|+|+.|++..+..... .++.
T Consensus 163 eAqr~GareaAr~y------------------Ae~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 163 EAQRLGAREAARHY------------------AERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred HHHhcccHHHHHHH------------------HHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence 2333333333222 24555555555555555555556666666666666543321 1111
Q ss_pred hh-----hHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccc
Q 004243 511 HE-----RLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (766)
Q Consensus 511 ~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 585 (766)
.+ .+...+.... .-+...|...-.++.++.|+. .
T Consensus 225 aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdl----------------------------------------v 263 (531)
T COG3898 225 AERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDL----------------------------------------V 263 (531)
T ss_pred HHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCcc----------------------------------------c
Confidence 11 1111111111 223455555555555555554 1
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHH
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDRE 664 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 664 (766)
.+-..-+..++..|+..++-..++.+.+.. ||+.+ ..|....--+.++.-++++
T Consensus 264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa--------------------- 318 (531)
T COG3898 264 PAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRA--------------------- 318 (531)
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHH---------------------
Confidence 222223344455555555555555555542 33322 2222222222222222222
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHcc
Q 004243 665 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESI-GDLTSAIRDSQAALCL 743 (766)
Q Consensus 665 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 743 (766)
++...+.|++.+....++..-+..|++..|...-+.+....|....+.+++.+-... ||-.+....+-++++-
T Consensus 319 ------~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 ------KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ------HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 223356788888888888888888999999888888888888888888888888765 8999999998888864
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.47 E-value=4.4e-06 Score=71.08 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=88.2
Q ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 004243 616 HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 695 (766)
Q Consensus 616 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 695 (766)
++..++.-|......|++++|++.|+.+....|.. |-...+.+.+|.+|++.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---------------------------~ya~qAqL~l~yayy~~~ 61 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG---------------------------EYAEQAQLDLAYAYYKQG 61 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---------------------------cccHHHHHHHHHHHHHcc
Confidence 45567777777777788877777777777766633 233577788899999999
Q ss_pred CHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHccCCCChhHHHHH
Q 004243 696 KEVEAVEELSKAIAFKPDL----QMLHLRAAFYESIGD---------------LTSAIRDSQAALCLDPNHMETLDLY 754 (766)
Q Consensus 696 ~~~~A~~~~~~al~~~p~~----~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~l 754 (766)
++++|+..+++-++++|++ -+++.+|.++..+.. ..+|...|++.++..|+++-+-...
T Consensus 62 ~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 62 DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred CHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 9999999999999998887 356678888888776 8899999999999999987665543
No 195
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00011 Score=68.50 Aligned_cols=123 Identities=18% Similarity=0.176 Sum_probs=65.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHH
Q 004243 593 SIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLK----NELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDRE 664 (766)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~ 664 (766)
.++.++.+.+-|.+.++++.+++....+..||.++... ++..+|.-.|++.-+..|..+......+ .+++++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 34444555555555555555554444444444443321 2344555555555554444444333333 345556
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHH-HHHHHhcCCChH
Q 004243 665 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE-LSKAIAFKPDLQ 715 (766)
Q Consensus 665 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~ 715 (766)
+|...++.++..+++++..+.++-.+-...|+..++.+- +.+.....|+.+
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 666666666666666677777777666677776665543 344444466654
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.44 E-value=5.9e-06 Score=69.38 Aligned_cols=99 Identities=19% Similarity=0.114 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHH
Q 004243 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 554 (766)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l 554 (766)
.+++.+|.++-..|+.++|+..|++++...... ..++..+|..+..+|++++|+..+++++...|+.+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~--------- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE--------- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------
Confidence 467888889999999999999999998865443 56788889999999999999999999888777730
Q ss_pred HhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHc
Q 004243 555 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALD 613 (766)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 613 (766)
+. ......++.++...|++++|+..+-.++.
T Consensus 73 ----------------~~------------~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 ----------------LN------------AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----------------cc------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00 22334456677777777777777766554
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.43 E-value=4.5e-06 Score=78.86 Aligned_cols=111 Identities=13% Similarity=0.057 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHH
Q 004243 620 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 699 (766)
Q Consensus 620 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 699 (766)
.++.|.-++..|++.+|...|..-+...|+.. -.+.+++.||.+++.+|++++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---------------------------~~~nA~yWLGe~~y~qg~y~~ 196 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---------------------------YTPNAYYWLGESLYAQGDYED 196 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---------------------------ccchhHHHHHHHHHhcccchH
Confidence 56667777777778777777777777776542 237888899999999999999
Q ss_pred HHHHHHHHHhcCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 700 AVEELSKAIAFKPDL----QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 700 A~~~~~~al~~~p~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
|...|..+.+-.|++ +.++.+|.+...+|+.++|...|+++++..|+.+.+.....++
T Consensus 197 Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 197 AAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999998887776 4566889999999999999999999999999987776554444
No 198
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.42 E-value=0.00027 Score=69.33 Aligned_cols=208 Identities=25% Similarity=0.242 Sum_probs=167.7
Q ss_pred HHHHHHcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc
Q 004243 466 INQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARN--HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (766)
Q Consensus 466 ~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (766)
+...+...+. ........+..+...+++..+...+..... ..+.....+...|..+...+++..++..+.+++...
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (291)
T COG0457 46 LEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD 125 (291)
T ss_pred HHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 4555555554 367888899999999999999999999887 678888999999999999999999999999999877
Q ss_pred cchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHH-HHHHhCCHHHHHHHHHHHHccCC----
Q 004243 542 RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGS-IYVECGKLDQAENCYINALDIKH---- 616 (766)
Q Consensus 542 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~---- 616 (766)
+.. .......+. ++...|+++.|...|.+++...+
T Consensus 126 ~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (291)
T COG0457 126 PDP----------------------------------------DLAEALLALGALYELGDYEEALELYEKALELDPELNE 165 (291)
T ss_pred CCc----------------------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Confidence 664 111222233 78888999999999999877533
Q ss_pred -hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccC-CHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 004243 617 -TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY-SASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAV 690 (766)
Q Consensus 617 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 690 (766)
.......+..+...++++.|+..+.+++...+. ....+...+ ..+++++|+..+..++...|.....+..++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 166 LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 235556666677888999999999999999888 566666666 34578999999999999998877788888888
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCC
Q 004243 691 LMDDQKEVEAVEELSKAIAFKPD 713 (766)
Q Consensus 691 ~~~~g~~~~A~~~~~~al~~~p~ 713 (766)
+...+.++++...+.+++...|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 246 LLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc
Confidence 88778899999999999999887
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.41 E-value=6.1e-06 Score=69.25 Aligned_cols=98 Identities=19% Similarity=0.112 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHH
Q 004243 387 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 466 (766)
Q Consensus 387 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~ 466 (766)
..+.+|+++-..|+.++|+..|++++...+....
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~---------------------------------------------- 36 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD---------------------------------------------- 36 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH----------------------------------------------
Confidence 3455777788888888888888888775444331
Q ss_pred HHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---chhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 467 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
...++..+|..+..+|++++|+..+++++...|+ +......++.++...|++++|+..+-.++.
T Consensus 37 ---------~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 37 ---------RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1235667888888888888888888888888777 667777788888888888888888877764
No 200
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.40 E-value=2.9e-07 Score=84.20 Aligned_cols=100 Identities=22% Similarity=0.170 Sum_probs=68.8
Q ss_pred EEEeehHHHhcCCHHHHHHhcCCCccCCC---------CeEEecCCCCCHHHHHHHHHHhhcCCCCC-------------
Q 004243 65 EISFVRNKIASLSSPFKAMLYGGFVESKR---------KTIDFSHDGVSVEGLRAVEVYTRTSRVDL------------- 122 (766)
Q Consensus 65 ~~~~h~~~l~~~s~~f~~~~~~~~~e~~~---------~~i~~~~~~~~~~~~~~~l~~~yt~~~~~------------- 122 (766)
+++||+.|.++||++||.++....+|... ..|.+++.-++..---.+|.+|||++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSL 341 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSL 341 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccH
Confidence 68899999999999999999765554432 25666433333333456789999998863
Q ss_pred --------------CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHH
Q 004243 123 --------------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILI 165 (766)
Q Consensus 123 --------------~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~ 165 (766)
+.....++|+.+|-+|.++.|.+.|+..+...+. .+++..++
T Consensus 342 SeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~aca-adlsn~cL 397 (401)
T KOG2838|consen 342 SEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACA-ADLSNGCL 397 (401)
T ss_pred HHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcccccc
Confidence 0013356777777777777777777777777766 66655443
No 201
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.38 E-value=0.0035 Score=66.53 Aligned_cols=333 Identities=14% Similarity=0.022 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------HccCC--CHH---HHHH-HHHHHHhhhhHHHHHHHHHHHHhccCCcccc
Q 004243 354 PYKYRAVAKMEEGQIRAAISEIDRI------IVFKL--SVD---CLEL-RAWLFIAADDYESALRDTLALLALESNYMMF 421 (766)
Q Consensus 354 ~~~~~a~~~~~~g~~~~A~~~~~~a------l~~~~--~~~---~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 421 (766)
.|-..|.++.+..++++|+++|++. +++.. -|. .+.. .|.-+.+.|+++.|+..|-.+-.+-.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~k----- 737 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK----- 737 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH-----
Confidence 3445566777777788888777643 22221 111 1222 56666777888888877754321100
Q ss_pred cccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004243 422 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 501 (766)
Q Consensus 422 ~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 501 (766)
.-........|.+|...+ .. ++-.......|-..+.-|...|+|+.|.+.|.
T Consensus 738 ---------aieaai~akew~kai~il------------------dn-iqdqk~~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 738 ---------AIEAAIGAKEWKKAISIL------------------DN-IQDQKTASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred ---------HHHHHhhhhhhhhhHhHH------------------HH-hhhhccccccchHHHHHhccchhHHHHHHHHH
Confidence 001111123455553222 11 11112233455677888888999999998887
Q ss_pred HHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch--HHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHhc
Q 004243 502 LARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDP--ESSTYVIQLLEEALRC 577 (766)
Q Consensus 502 ~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~A~~~ 577 (766)
++- ....-..+|-+.|+|+.|.+.-++... |.. ..|...+.-+-..|.-. ...+..+|..+.|+..
T Consensus 790 e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqm 859 (1636)
T KOG3616|consen 790 EAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQM 859 (1636)
T ss_pred hcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHH
Confidence 642 222334567788889888888777653 444 44444444444444110 1111113344555555
Q ss_pred hhhccc------------c---chhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHH
Q 004243 578 PSDGLR------------K---GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTK 642 (766)
Q Consensus 578 ~~~~l~------------~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 642 (766)
|.+.-. + .+.+..+|.-+...|+.+.|...|-++-... .-...|...+-+++|.+..+.
T Consensus 860 ydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k------aavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK------AAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH------HHHHHhhhhhhHHHHHHHHhc
Confidence 544311 0 2555667777777777777777776654331 111222222333333222110
Q ss_pred H--------------HHhccCCH-HHHHHHh----------hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 643 L--------------LEKAQYSA-SAFEKRS----------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 643 ~--------------l~~~p~~~-~~~~~~~----------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
- -++..+-. ..++..| ..+-++-|...-+-+. ....+.++..++..+...|++
T Consensus 934 egg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~--k~k~~~vhlk~a~~ledegk~ 1011 (1636)
T KOG3616|consen 934 EGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA--KDKMGEVHLKLAMFLEDEGKF 1011 (1636)
T ss_pred cccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh--hccCccchhHHhhhhhhccch
Confidence 0 00000000 0011111 1222333333322222 234578899999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHH-----HHHHHHHcC-CHHHHHHHH
Q 004243 698 VEAVEELSKAIAFKPDLQMLHL-----RAAFYESIG-DLTSAIRDS 737 (766)
Q Consensus 698 ~~A~~~~~~al~~~p~~~~~~~-----la~~~~~~g-~~~~A~~~~ 737 (766)
++|-+.|-.+++++.-+..|.. .-.-..+.| +.++|+.+|
T Consensus 1012 edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 1012 EDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred hhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 9999999999999877755541 122223344 667777666
No 202
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.38 E-value=6.9e-05 Score=70.24 Aligned_cols=173 Identities=15% Similarity=0.119 Sum_probs=123.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch----HHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFF 548 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~ 548 (766)
.+..|+..|...++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++-+++.|++ -+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46778999999999999999999999999988876 5678899999999999999999999999999988 3444
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc--c-------------------chhHHhhHHHHHHhCCHHHHHHH
Q 004243 549 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR--K-------------------GQALNNLGSIYVECGKLDQAENC 607 (766)
Q Consensus 549 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~-------------------~~~~~~lg~~~~~~g~~~~A~~~ 607 (766)
..|.+....- ...........+|+..++..++ | +.--..+|..|.+.|.+-.|+.-
T Consensus 113 lkgLs~~~~i---~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR 189 (254)
T COG4105 113 LKGLSYFFQI---DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINR 189 (254)
T ss_pred HHHHHHhccC---CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 4554433221 1111112233444444444433 1 22335678888899999999999
Q ss_pred HHHHHcc-----CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCH
Q 004243 608 YINALDI-----KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 651 (766)
Q Consensus 608 ~~~al~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 651 (766)
++.+++. ...+++..+..+|..+|-.++|...-.-+-...|++.
T Consensus 190 ~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 190 FEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 9988887 1236888888888888888888665443333334443
No 203
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.37 E-value=1.5e-06 Score=65.81 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 487 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
++..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3568999999999999999999999999999999999999999999999999999997
No 204
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=8.4e-06 Score=83.66 Aligned_cols=118 Identities=22% Similarity=0.222 Sum_probs=75.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHH
Q 004243 593 SIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNM 672 (766)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~ 672 (766)
..+...++++.|+..+++..+.+ |++...++.++...++..+|++.+.+++...
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~------------------------- 230 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERD-PEVAVLLARVYLLMNEEVEAIRLLNEALKEN------------------------- 230 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------------------------
Confidence 33444567777777777765554 4555666777666666666666666655554
Q ss_pred HHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 673 ATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 673 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
|.+...+...+..+...++++.|++..+++++..|+. ..|+.++.+|...|++++|+..++.+-
T Consensus 231 -----p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 231 -----PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 4445555556666666777777777777777777766 566667777777777777766665443
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.32 E-value=2.7e-06 Score=65.53 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=58.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 484 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 484 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
..+|...+++++|++.+++++..+|+++..+..+|.++...|++++|++.++++++..|+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 5678999999999999999999999999999999999999999999999999999999987
No 206
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.32 E-value=6.3e-06 Score=67.25 Aligned_cols=89 Identities=29% Similarity=0.325 Sum_probs=74.4
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHcCCHHHH
Q 004243 659 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-----QMLHLRAAFYESIGDLTSA 733 (766)
Q Consensus 659 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~la~~~~~~g~~~~A 733 (766)
+-|+.+.|++.|.+++.+-|.++.+|++++..+.-+|+.++|+..+++++++..+. ..+..+|.+|..+|+-+.|
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 55677778888888888888889999999999999999999999999999984333 2344789999999999999
Q ss_pred HHHHHHHHccCCCC
Q 004243 734 IRDSQAALCLDPNH 747 (766)
Q Consensus 734 ~~~~~~al~~~p~~ 747 (766)
...|+.+-++....
T Consensus 135 R~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 135 RADFEAAAQLGSKF 148 (175)
T ss_pred HHhHHHHHHhCCHH
Confidence 99999998886554
No 207
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=1.2e-05 Score=82.60 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=85.5
Q ss_pred HHHHHHHhchhhccc-cchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004243 569 QLLEEALRCPSDGLR-KGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLE 645 (766)
Q Consensus 569 ~~~~~A~~~~~~~l~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 645 (766)
++++.|++.+++..+ .+++...++.++...++-.+|++.+.+++... +...+...+..+...++++.|+...+++++
T Consensus 183 ~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ 262 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVE 262 (395)
T ss_pred ccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 478899999988866 35778889999999999999999999999874 456677778888888888777777666665
Q ss_pred hccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004243 646 KAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 707 (766)
Q Consensus 646 ~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 707 (766)
. .|.+...|..|+.+|...|++++|+..++.+
T Consensus 263 l------------------------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 263 L------------------------------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred h------------------------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5 4555666777778888888888888776644
No 208
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.31 E-value=5.5e-06 Score=76.62 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=84.8
Q ss_pred ceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCc--cCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC-CCHHHHHHHH
Q 004243 56 SVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELL 132 (766)
Q Consensus 56 dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~-~~~~~~~~~l 132 (766)
=|.+.|||+.|..++.-|.-...+|++||.+++. -...+.|-| |=||.-|..+|.||-.|.+.. .+...+.+|+
T Consensus 6 ~vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~ 82 (230)
T KOG2716|consen 6 TVKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELL 82 (230)
T ss_pred eEEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHH
Confidence 4678899999999999999999999999999874 234567888 789999999999999888772 4556788999
Q ss_pred HHhhhhChHhHHHHHHHHHHhhcC
Q 004243 133 SFANRFCCEEMKSACDAHLASLVG 156 (766)
Q Consensus 133 ~~a~~~~~~~l~~~c~~~l~~~~~ 156 (766)
.=|.+|.+++|.+.|...+...+.
T Consensus 83 ~EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 83 REAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHHhhHHHHHHHHHHHhhhccc
Confidence 999999999999999998877655
No 209
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.31 E-value=0.0067 Score=62.55 Aligned_cols=378 Identities=12% Similarity=-0.030 Sum_probs=205.1
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccc
Q 004243 342 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMM 420 (766)
Q Consensus 342 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 420 (766)
++-|+.+|.+..+|+.+..-+..+ -+++..+.|++.+...| .+..|.......+...+|+.....|.++|..--+-..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDL 88 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDL 88 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhH
Confidence 567788999999999888777666 89999999999998888 4444555777778888999999888888863222110
Q ss_pred ccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHH---cCCCChhHHHHHHHHHH---------
Q 004243 421 FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI---NDPGKSFLRFRQSLLLL--------- 488 (766)
Q Consensus 421 ~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~---~~p~~~~~~~~la~~~~--------- 488 (766)
-...+.-+....+....+...+ ...|+-+++ .++.....|...+..+.
T Consensus 89 ------W~lYl~YVR~~~~~~~~~r~~m--------------~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~e 148 (656)
T KOG1914|consen 89 ------WKLYLSYVRETKGKLFGYREKM--------------VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYE 148 (656)
T ss_pred ------HHHHHHHHHHHccCcchHHHHH--------------HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHH
Confidence 1112233333333333322211 222232222 35555566665554433
Q ss_pred hcCCHHHHHHHHHHHHhcCCCch-hhHHHH-------------HHHHHHCCCHHHHHHHHHHHHccc-------cc----
Q 004243 489 RLNCQKAAMRCLRLARNHSSSEH-ERLVYE-------------GWILYDTGHREEALSRAEKSISIE-------RT---- 543 (766)
Q Consensus 489 ~~g~~~~A~~~~~~a~~~~p~~~-~~~~~l-------------g~~~~~~g~~~~A~~~~~~al~~~-------p~---- 543 (766)
.+.+.+.-...|++++..--.+. ..|... -.+--....|..|...+++...+- |.
T Consensus 149 e~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~ 228 (656)
T KOG1914|consen 149 ENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPK 228 (656)
T ss_pred HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence 23355566677888877622221 112111 112223344566666665543321 11
Q ss_pred h--------HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc----cchhHHhhHHH-------HHHhCC----
Q 004243 544 F--------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSI-------YVECGK---- 600 (766)
Q Consensus 544 ~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~~~~~~lg~~-------~~~~g~---- 600 (766)
. +.|.+....-....+......... .+..=.+++.+. .++.|+.-+.. +...|+
T Consensus 229 ~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~---~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 229 GTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT---RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDA 305 (656)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCcccccccHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 1 112222222222222211111100 111111222222 13444443333 333333
Q ss_pred ---HHHHHHHHHHHHccC---ChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhccCCHH-HHHHHh----hhcCHHHH
Q 004243 601 ---LDQAENCYINALDIK---HTRAHQGLARVYYLKNE---LKAAYDEMTKLLEKAQYSAS-AFEKRS----EYSDREMA 666 (766)
Q Consensus 601 ---~~~A~~~~~~al~~~---~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~-~~~~~~----~~~~~~~A 666 (766)
.+++..+|++++... ....++.++.--...-+ .+.....+++++.....+.. +|...- ...-...|
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 578888888888762 22344444443322222 55566677777655433322 222222 22334667
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 667 KNDLNMATQLDPLRTYPYRYRAAV-LMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 667 ~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
...|.++-+..-....++..-|.+ |...++.+-|...|+-.+...++.+.+. .....+...|+-..|...|++++..
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 777777665443333455444433 4456899999999999999999998776 4577778889999999999998877
No 210
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.27 E-value=1.3e-05 Score=75.71 Aligned_cols=68 Identities=13% Similarity=0.003 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
+.+++.+|.+++.+|+++.|...|..+.+..|+. |++++.+|.+...+|+.++|...|+++++..|+.
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 3456666666666666666666666666655544 5566666777777777777777777777666665
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.26 E-value=0.00012 Score=64.06 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=104.2
Q ss_pred HHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-ccCCcccccccchhhhHHhHHHHHHhhh
Q 004243 363 MEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA-LESNYMMFHGRVSGDHLVKLLNHHVRSW 441 (766)
Q Consensus 363 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~a~~~l~~~~~~~~~~ 441 (766)
.+.=+.+.+.....+.+...|+...-+.+|......|++.||...|++++. +..+++. .+..++......+.+
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a------~lLglA~Aqfa~~~~ 140 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA------MLLGLAQAQFAIQEF 140 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH------HHHHHHHHHHhhccH
Confidence 334455666666666666677666666788888999999999999998886 4444442 444455555555555
Q ss_pred chHhhHHHhhhhhcccCccccHHHHHHHHHcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHH
Q 004243 442 SPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 519 (766)
Q Consensus 442 ~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~ 519 (766)
..|.. .+++..+.+|. .++.....|..+..+|++.+|...|+.++...|+ +.+...++.
T Consensus 141 A~a~~------------------tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e 201 (251)
T COG4700 141 AAAQQ------------------TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAE 201 (251)
T ss_pred HHHHH------------------HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 55532 33556666553 4666777888888888888888888888888776 667777788
Q ss_pred HHHHCCCHHHHHHHHHHHH
Q 004243 520 ILYDTGHREEALSRAEKSI 538 (766)
Q Consensus 520 ~~~~~g~~~~A~~~~~~al 538 (766)
.+..+|+..+|..-+....
T Consensus 202 ~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 202 MLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHhcchhHHHHHHHHHH
Confidence 8888888777766554443
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.25 E-value=3.3e-06 Score=85.73 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=61.2
Q ss_pred cCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 676 LDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 676 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
.+|+++.+++++|.+|...|+|++|+..|+++++++|++. .++++|.+|..+|++++|+..+++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788899999999999999999999999999999999985 3679999999999999999999999987
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.25 E-value=2.6e-05 Score=66.45 Aligned_cols=83 Identities=13% Similarity=0.070 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchh
Q 004243 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 427 (766)
Q Consensus 352 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 427 (766)
+..++..|...++.|+|++|++.|+.+....| .......+|.+|++.|++++|+..+++-++++|+++.. .-+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v---dYa 86 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV---DYA 86 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc---cHH
Confidence 56788899999999999999999999999888 23334449999999999999999999999999999841 124
Q ss_pred hhHHhHHHHH
Q 004243 428 DHLVKLLNHH 437 (766)
Q Consensus 428 ~~~l~~~~~~ 437 (766)
++..|..+..
T Consensus 87 ~Y~~gL~~~~ 96 (142)
T PF13512_consen 87 YYMRGLSYYE 96 (142)
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 214
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00017 Score=72.65 Aligned_cols=150 Identities=16% Similarity=0.122 Sum_probs=85.7
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHcc-CChHHHHHHHHHH-----HHhccHHHHHHHHHHHHHhccCCHHHHHHHhh
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQGLARVY-----YLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 659 (766)
..+-+.+.+-+..|+.-.|+..-++.++. +-..++.-+|.+| ..+.+..+|...+.-.+--+.+....+..
T Consensus 510 ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~--- 586 (696)
T KOG2471|consen 510 AIFANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQ--- 586 (696)
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccch---
Confidence 34556677778889999999988888887 3344555555554 34445555544433211000000000000
Q ss_pred hcCHHHHHHHHHHHHhcCC---------------CCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--hH-HHHHHH
Q 004243 660 YSDREMAKNDLNMATQLDP---------------LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD--LQ-MLHLRA 721 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~-~~~~la 721 (766)
.|++. +...--.++| ......+++|.++.-+|++++|..++..+..+-|. ++ +....-
T Consensus 587 -~Df~~---~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lav 662 (696)
T KOG2471|consen 587 -EDFDQ---WWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAV 662 (696)
T ss_pred -hhhhh---hhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence 00000 0000001111 11456789999999999999999999999888662 22 232334
Q ss_pred HHHHHcCCHHHHHHHHHHHHc
Q 004243 722 AFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~al~ 742 (766)
.+-.+.|+...|...+++.-.
T Consensus 663 yidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 663 YIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHHHhcCCCcchHHHHHhccc
Confidence 455678999999888877543
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.23 E-value=4.6e-06 Score=84.70 Aligned_cols=70 Identities=11% Similarity=-0.030 Sum_probs=66.6
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhh---HHHHHHHHHHCCCHHHHHHHHHHHHccc
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER---LVYEGWILYDTGHREEALSRAEKSISIE 541 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (766)
.+|+++.+++++|.+|...|+|++|+..|+++++++|+++++ |+++|.+|..+|++++|+..+++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999865 9999999999999999999999999973
No 216
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.0011 Score=66.92 Aligned_cols=140 Identities=18% Similarity=0.194 Sum_probs=99.3
Q ss_pred HHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCC--------chhhHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004243 468 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA-RNHSSS--------EHERLVYEGWILYDTGHREEALSRAEKSI 538 (766)
Q Consensus 468 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (766)
.+.....+.+.+.+..+..++..|++.+|.+.+... +...|. .-..|.++|.++++.|.|..+..+|.+++
T Consensus 231 ~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL 310 (696)
T KOG2471|consen 231 HVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKAL 310 (696)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHH
Confidence 344455678889999999999999999999988643 222222 23357899999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CC
Q 004243 539 SIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KH 616 (766)
Q Consensus 539 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~ 616 (766)
+ +. ...+. .|+.+....... . -+.-+..++.|..|+..|++-.|.++|.+++.. .+
T Consensus 311 ~---N~------c~qL~-~g~~~~~~~tls----~--------nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 311 R---NS------CSQLR-NGLKPAKTFTLS----Q--------NKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred H---HH------HHHHh-ccCCCCcceehh----c--------ccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 6 11 00000 011111100000 0 001377899999999999999999999999988 68
Q ss_pred hHHHHHHHHHHHH
Q 004243 617 TRAHQGLARVYYL 629 (766)
Q Consensus 617 ~~~~~~la~~~~~ 629 (766)
|..|..+|.+...
T Consensus 369 PrlWLRlAEcCim 381 (696)
T KOG2471|consen 369 PRLWLRLAECCIM 381 (696)
T ss_pred cHHHHHHHHHHHH
Confidence 8999999987654
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.16 E-value=6e-05 Score=61.70 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCC
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL 559 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~ 559 (766)
+-..|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-.|+.++|+..+++++++..+.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--------------- 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--------------- 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc---------------
Confidence 34567888889999999999999999999999999999999999999999999999999875432
Q ss_pred CCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChH
Q 004243 560 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTR 618 (766)
Q Consensus 560 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (766)
-.. .-.++...|.+|..+|+-+.|...|+.+.+++.+-
T Consensus 111 -----------trt----------acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 111 -----------TRT----------ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred -----------chH----------HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 000 02567888999999999999999999998886543
No 218
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.014 Score=59.38 Aligned_cols=397 Identities=12% Similarity=0.035 Sum_probs=212.5
Q ss_pred HHHHHHHHHhcCCCC---chHHHHHHHHH-HHcCCHHHHHHHHHHHHccCC---CH-----HHHHHHHHHHHhhh-hHHH
Q 004243 337 KIVDLNYASELDPTL---SFPYKYRAVAK-MEEGQIRAAISEIDRIIVFKL---SV-----DCLELRAWLFIAAD-DYES 403 (766)
Q Consensus 337 A~~~~~~al~~~p~~---~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~~---~~-----~~~~~~a~~~~~~g-~~~~ 403 (766)
+|++++......|.. +.....+|.++ ....+++.|...++++..+.. +. ..+.+++.+|.... .+..
T Consensus 28 ~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~ 107 (629)
T KOG2300|consen 28 CIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPP 107 (629)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 666666666665543 23445555544 446788888888888764432 22 23445788887776 7788
Q ss_pred HHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHH
Q 004243 404 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ 483 (766)
Q Consensus 404 A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~l 483 (766)
|...+++++++..+.+.+..+ ....++.+.....++..|.+.+...... .+ ..-..|-+++ .....
T Consensus 108 ~KalLrkaielsq~~p~wsck--llfQLaql~~idkD~~sA~elLavga~s---Ad-~~~~~ylr~~--------ftls~ 173 (629)
T KOG2300|consen 108 AKALLRKAIELSQSVPYWSCK--LLFQLAQLHIIDKDFPSALELLAVGAES---AD-HICFPYLRML--------FTLSM 173 (629)
T ss_pred HHHHHHHHHHHhcCCchhhHH--HHHHHHHHHhhhccchhHHHHHhccccc---cc-hhhhHHHHHH--------HHHHH
Confidence 888888888887777744333 5666777776666777665433111000 00 0000001110 01112
Q ss_pred HHHHHhcCCH---HHHHHHHHHHHhcCCCchh-------hHHHHHHH-HHHCCCHHHHHHHHHH---HHcc-cc------
Q 004243 484 SLLLLRLNCQ---KAAMRCLRLARNHSSSEHE-------RLVYEGWI-LYDTGHREEALSRAEK---SISI-ER------ 542 (766)
Q Consensus 484 a~~~~~~g~~---~~A~~~~~~a~~~~p~~~~-------~~~~lg~~-~~~~g~~~~A~~~~~~---al~~-~p------ 542 (766)
+.++....+. ..+.....+..+....++. .+..+-.+ |...|+...+....++ .+.. .+
T Consensus 174 ~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~ 253 (629)
T KOG2300|consen 174 LMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHD 253 (629)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCcc
Confidence 2233322232 3333333444433322221 22223333 3345665555444443 2221 11
Q ss_pred -------ch--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcc-------c-c----------chhHHhhHHHH
Q 004243 543 -------TF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL-------R-K----------GQALNNLGSIY 595 (766)
Q Consensus 543 -------~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l-------~-~----------~~~~~~lg~~~ 595 (766)
.- -.|........-..+.........|-++++.++-++++ + + -..+-.+..+-
T Consensus 254 e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~ 333 (629)
T KOG2300|consen 254 EKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCR 333 (629)
T ss_pred ccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 10 11211111111111111111112234444444444332 2 1 13445667777
Q ss_pred HHhCCHHHHHHHHHHHHcc--C----------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccC-CHHHHHHHh---h
Q 004243 596 VECGKLDQAENCYINALDI--K----------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY-SASAFEKRS---E 659 (766)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~--~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~---~ 659 (766)
.-.|++.+|++....+.+. . .+..+..+|.-...-|.++.|...|..+.+.... +..+..++. .
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 7889999999988887765 1 1245666777777778899999999988765432 222222221 1
Q ss_pred hcCHHHHHHHHHHHHhcCCCC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-----H--HHHHHH
Q 004243 660 YSDREMAKNDLNMATQLDPLR----------TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-----M--LHLRAA 722 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~--~~~la~ 722 (766)
+-+..++...++-.-.+.|.+ ..+++..|...+.++++.||...+.+.++...... . +..+|.
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 111122223333222345543 56677888888999999999999999998852211 1 226789
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCC
Q 004243 723 FYESIGDLTSAIRDSQAALCLDPNH 747 (766)
Q Consensus 723 ~~~~~g~~~~A~~~~~~al~~~p~~ 747 (766)
+....||..++.+..+-++++....
T Consensus 494 v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHHHhcchHHHHhccchHHHHHhcC
Confidence 9999999999999998888775433
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.12 E-value=0.0063 Score=60.11 Aligned_cols=185 Identities=14% Similarity=0.017 Sum_probs=127.0
Q ss_pred HHHHHHHHHhcCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHH--HhhhhHHHHHHHHHHHH
Q 004243 337 KIVDLNYASELDPTL--SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLF--IAADDYESALRDTLALL 412 (766)
Q Consensus 337 A~~~~~~al~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~--~~~g~~~~A~~~~~~al 412 (766)
|.+.-.++-++-..+ +.....-++.-+-.|+++.|.+-|+.++. +|....+-++|... ...|+.+.|..+-+.+-
T Consensus 103 ARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa 181 (531)
T COG3898 103 ARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAA 181 (531)
T ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 666666665443333 34455557888889999999999999874 44332233344433 35799999999999999
Q ss_pred hccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCC-----hhHHHHHHHHH
Q 004243 413 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-----SFLRFRQSLLL 487 (766)
Q Consensus 413 ~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~-----~~~~~~la~~~ 487 (766)
...|.-++ +....-......|+|+.|..+++.... ...+.++. ...+...+...
T Consensus 182 ~~Ap~l~W------A~~AtLe~r~~~gdWd~AlkLvd~~~~---------------~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 182 EKAPQLPW------AARATLEARCAAGDWDGALKLVDAQRA---------------AKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred hhccCCch------HHHHHHHHHHhcCChHHHHHHHHHHHH---------------HHhhchhhHHHHHHHHHHHHHHHH
Confidence 99999886 444444445566899999755522111 11112221 11222223222
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 488 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
. .-+...|...-..+.++.|+...+-..-+..++..|+..++-..++.+.+..|.-
T Consensus 241 l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 241 L-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred h-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 2 2457888999999999999999898999999999999999999999999988764
No 220
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=98.11 E-value=4.9e-06 Score=67.55 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=69.6
Q ss_pred eEEEEcCeEEEeehHHHh-cCCHHHHHHhcCC---CccCCCCeEEecCCCCCHHHHHHHHHHhhc-CCCCCCCHHHHHHH
Q 004243 57 VTFCVRDKEISFVRNKIA-SLSSPFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPGIVLEL 131 (766)
Q Consensus 57 v~~~~~~~~~~~h~~~l~-~~s~~f~~~~~~~---~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt-~~~~~~~~~~~~~~ 131 (766)
|+|.|||+.|.+-+..|. ....+|..||++. ......+++-| |-+|..|+.||+|+-+ +.+...+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999997 6678999999975 44456678888 6789999999999999 66662235678889
Q ss_pred HHHhhhhChHhH-HHHH
Q 004243 132 LSFANRFCCEEM-KSAC 147 (766)
Q Consensus 132 l~~a~~~~~~~l-~~~c 147 (766)
+.-|..|+++.| .+.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 7766
No 221
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.11 E-value=0.022 Score=60.72 Aligned_cols=53 Identities=17% Similarity=0.062 Sum_probs=36.8
Q ss_pred hCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCC
Q 004243 598 CGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (766)
Q Consensus 598 ~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 650 (766)
.+-++-|.+.-+-+.+-..+.++..++..+...|++++|-+.|-+++.++.-+
T Consensus 976 ~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 976 NCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 34455555555555555566778888888888888888888888888776544
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.00074 Score=62.76 Aligned_cols=220 Identities=15% Similarity=0.151 Sum_probs=124.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------------------hhh-HHHHHHHHHHCCCHHHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------------------HER-LVYEGWILYDTGHREEALSRAEK 536 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------------------~~~-~~~lg~~~~~~g~~~~A~~~~~~ 536 (766)
....|...-.++.++..+++|...+...-+.+..+ |.+ ....+.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44567777788888888888887776554443221 111 23346777778888887766655
Q ss_pred HHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-
Q 004243 537 SISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK- 615 (766)
Q Consensus 537 al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 615 (766)
....-.+. .....++..++ ..+..|++-+ ..+.+.+..++...|+|.-....+.+.++.+
T Consensus 148 L~~~V~~i-------i~~~e~~~~~E---Ssv~lW~KRl---------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 148 LKTVVSKI-------LANLEQGLAEE---SSIRLWRKRL---------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HHHHHHHH-------HHHHHhccchh---hHHHHHHHHH---------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 44311110 00011111111 1111222222 4567788888899999999999999999875
Q ss_pred --ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccC------CHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchh
Q 004243 616 --HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY------SASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYP 683 (766)
Q Consensus 616 --~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~ 683 (766)
.|.....+|++.++.|+.+.|..+|+..-+.... +..+..+.+ -.+++..|...+.+.+..||.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 3457788999999999999999888865432111 000111111 1234444444455555555555555
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 684 YRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 684 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
.++.|.+++-.|+..+|++..+.+++..|..
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 5555555555555555555555555554443
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.09 E-value=4.9e-06 Score=65.03 Aligned_cols=65 Identities=25% Similarity=0.219 Sum_probs=54.2
Q ss_pred CCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc---CC-Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 679 LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF---KP-DL----QMLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 679 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
+.+.++.++|.+|...|++++|+.+|++++++ .+ +. ..+.++|.++..+|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34578899999999999999999999999876 22 22 23448999999999999999999999976
No 224
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.08 E-value=0.0069 Score=66.29 Aligned_cols=227 Identities=14% Similarity=0.083 Sum_probs=115.5
Q ss_pred HHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhh
Q 004243 363 MEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSW 441 (766)
Q Consensus 363 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~ 441 (766)
...+++.+|+....+.++..|+...... .|..+.++|+.++|...++..-...+++. ..+..+..+|...+++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~------~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD------LTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch------HHHHHHHHHHHHHhhh
Confidence 4556777777777777777776655554 77777777777777765554444444433 2444444444444444
Q ss_pred chHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q 004243 442 SPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 521 (766)
Q Consensus 442 ~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~ 521 (766)
++| +..|+++++.+|+ -+..+.+=.+|.+-+.|.+-.+.--+..+..|.++..+.....+.
T Consensus 94 d~~------------------~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 94 DEA------------------VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred hHH------------------HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 444 2333444444444 344444444444444443333332233333344333222222221
Q ss_pred HH-CCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc-------chhHHhhHH
Q 004243 522 YD-TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK-------GQALNNLGS 593 (766)
Q Consensus 522 ~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~~~~~~lg~ 593 (766)
++ ....++... .. ...-|....++.+.. +++ ...-.
T Consensus 155 lqs~~~~~~~~~--------------------------------~i---~l~LA~~m~~~~l~~~gk~~s~aE~-~Lyl~ 198 (932)
T KOG2053|consen 155 LQSIFSENELLD--------------------------------PI---LLALAEKMVQKLLEKKGKIESEAEI-ILYLL 198 (932)
T ss_pred HHhccCCccccc--------------------------------ch---hHHHHHHHHHHHhccCCccchHHHH-HHHHH
Confidence 11 111111111 00 011111111111111 111 11224
Q ss_pred HHHHhCCHHHHHHHHHHHHcc----CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCC
Q 004243 594 IYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (766)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 650 (766)
++..+|++++|.+.+..-+.. .+......-...+...+++.+-.+...+++...+++
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 556788999999998544433 122333455667788888999999999999888887
No 225
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.06 E-value=2.2e-06 Score=86.96 Aligned_cols=138 Identities=14% Similarity=0.040 Sum_probs=115.8
Q ss_pred CceEEEE--cCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHHHHH---
Q 004243 55 DSVTFCV--RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL--- 129 (766)
Q Consensus 55 ~dv~~~~--~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~--- 129 (766)
.|++... ++..+.+|+.+++++|++|++|+..+..+.....+++ .+.++..++.+..|+|+..-. ...+.+.
T Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~--~d~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~ 175 (297)
T KOG1987|consen 99 LPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITL--LEEKPEVLEALNGFQVLPSQV-SSVERIFEKH 175 (297)
T ss_pred cChHHhhcccCcEEEcCceEEEeeecceeeecccccchhccccccc--cccchhhHhhhceEEEeccch-HHHHHhhcCC
Confidence 3444443 3566999999999999999999998887777777788 899999999999999996554 3444444
Q ss_pred HHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHh--hhhhhcCccc
Q 004243 130 ELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLR--ELPSSLYNPK 196 (766)
Q Consensus 130 ~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~--~~~~~~~~~~ 196 (766)
.++..+.++..+.|+..|...+...+. ..+++..+..+..+++..+...|..++.. ++..+.....
T Consensus 176 ~~~a~~f~~~~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~ 243 (297)
T KOG1987|consen 176 PDLAAAFKYKNRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLN 243 (297)
T ss_pred hhhhhccccccHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence 888999999999999999999999999 99999999999999999999999999987 6665544333
No 226
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.023 Score=57.86 Aligned_cols=376 Identities=14% Similarity=0.063 Sum_probs=227.1
Q ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCHHH----HHHHHHHH-HhhhhHHHHHHHHHHHHhccCCcccc-ccc
Q 004243 353 FPYKYRAVAKMEEG--QIRAAISEIDRIIVFKLSVDC----LELRAWLF-IAADDYESALRDTLALLALESNYMMF-HGR 424 (766)
Q Consensus 353 ~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~~~~~~----~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~-~~~ 424 (766)
.++..+|..+...| +...++++++..+...|.... ...+|.++ ....+.+-|...++++..+...-+.+ .-+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45677788888888 899999999999988884331 22255554 45789999999999998865554442 334
Q ss_pred chhhhHHhHHHHHHh-hhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCCh----hHHHHHHHHHHhcCCHHHHHHH
Q 004243 425 VSGDHLVKLLNHHVR-SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS----FLRFRQSLLLLRLNCQKAAMRC 499 (766)
Q Consensus 425 ~~a~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~ 499 (766)
..+..+++.++.... .+..+.. .+.++++...+.+ ...+.++.++.-..++..|++.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~Ka------------------lLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKA------------------LLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHH------------------HHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 467788888887766 4444432 3478888766555 3456788999999999999998
Q ss_pred HHHHHhc-CCCc---hhhHHHH--HHHHHHCCC---HHHHHHHHHHHHccc---cch-H----HHHHHHHHHHhcCCCCC
Q 004243 500 LRLARNH-SSSE---HERLVYE--GWILYDTGH---REEALSRAEKSISIE---RTF-E----AFFLKAYILADTNLDPE 562 (766)
Q Consensus 500 ~~~a~~~-~p~~---~~~~~~l--g~~~~~~g~---~~~A~~~~~~al~~~---p~~-~----~~~~~~~~l~~~~~~~~ 562 (766)
+.-.... ++-. ....+.+ +.++....+ ...+.....+..+.. |.. + .|..+..++....-...
T Consensus 150 Lavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~r 229 (629)
T KOG2300|consen 150 LAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVR 229 (629)
T ss_pred HhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchh
Confidence 5422221 1111 1122222 333433333 344445455544432 222 1 22222223322221222
Q ss_pred ChHHHHHHHHHHHhchhhc---cc------cc---hhH-----------HhhHHHHHHhCCHHHHHHHHHHHHccC----
Q 004243 563 SSTYVIQLLEEALRCPSDG---LR------KG---QAL-----------NNLGSIYVECGKLDQAENCYINALDIK---- 615 (766)
Q Consensus 563 ~~~~~~~~~~~A~~~~~~~---l~------~~---~~~-----------~~lg~~~~~~g~~~~A~~~~~~al~~~---- 615 (766)
.....+.++++.+...... .. |. ..| ..-..--.-.|-+++|.++-++++...
T Consensus 230 t~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklk 309 (629)
T KOG2300|consen 230 TVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLK 309 (629)
T ss_pred hhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 2333344555555544432 10 10 111 111111123466778888777777651
Q ss_pred --C--h--------HHHHHHHHHHHHhccHHHHHHHHHHHHHhc---cC-------CHHHHHHHh----hhcCHHHHHHH
Q 004243 616 --H--T--------RAHQGLARVYYLKNELKAAYDEMTKLLEKA---QY-------SASAFEKRS----EYSDREMAKND 669 (766)
Q Consensus 616 --~--~--------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~-------~~~~~~~~~----~~~~~~~A~~~ 669 (766)
+ . ..+..+..+..-.|++.+|++....+.+.. |. .+.....+| ..+-++.|...
T Consensus 310 q~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~h 389 (629)
T KOG2300|consen 310 QADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFH 389 (629)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHH
Confidence 1 1 244566777788999999998887776543 33 122344555 34678999999
Q ss_pred HHHHHhcCCC-C--chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-----------HHHHHHHHHHHHcCCHHHHHH
Q 004243 670 LNMATQLDPL-R--TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-----------QMLHLRAAFYESIGDLTSAIR 735 (766)
Q Consensus 670 ~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~la~~~~~~g~~~~A~~ 735 (766)
|..+.+.-.. + +.+..++|.+|...|+-+.-.+.++.. .|.+ ..++..|...+.++++.+|..
T Consensus 390 f~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~ 466 (629)
T KOG2300|consen 390 FIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKR 466 (629)
T ss_pred HHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9999876442 2 455568999999988765544444433 4432 234467888899999999999
Q ss_pred HHHHHHccCCCChhH
Q 004243 736 DSQAALCLDPNHMET 750 (766)
Q Consensus 736 ~~~~al~~~p~~~~~ 750 (766)
.+.+.+++. +..+.
T Consensus 467 ~l~e~Lkma-naed~ 480 (629)
T KOG2300|consen 467 FLRETLKMA-NAEDL 480 (629)
T ss_pred HHHHHHhhc-chhhH
Confidence 999999987 43443
No 227
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00044 Score=63.11 Aligned_cols=181 Identities=15% Similarity=0.075 Sum_probs=118.6
Q ss_pred HHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----C----ChHHHHHHHHHHHHhccHHHHHHHHH
Q 004243 570 LLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYDEMT 641 (766)
Q Consensus 570 ~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~----~~~~~~~la~~~~~~g~~~~A~~~~~ 641 (766)
++++|.++|. .-|+.|...++|+.|-..|.++... + -...+...+.+| +.+++.+|..+++
T Consensus 29 k~eeAadl~~----------~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~ 97 (288)
T KOG1586|consen 29 KYEEAAELYE----------RAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLE 97 (288)
T ss_pred chHHHHHHHH----------HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHH
Confidence 6677766444 3455555556666666666555544 1 112344444553 4457888888888
Q ss_pred HHHHhccCCHHH------HHHHh-----hhcCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhCCCHHHHHHHH
Q 004243 642 KLLEKAQYSASA------FEKRS-----EYSDREMAKNDLNMATQLDPLR------TYPYRYRAAVLMDDQKEVEAVEEL 704 (766)
Q Consensus 642 ~~l~~~p~~~~~------~~~~~-----~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 704 (766)
+++++..+-+.. +..++ .+.++++|+.+|+++-+..... -..+...|..-...++|.+|+..|
T Consensus 98 ~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iy 177 (288)
T KOG1586|consen 98 KAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIY 177 (288)
T ss_pred HHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776554432 11223 3467789999999987654322 345666777777889999999999
Q ss_pred HHHHhcCCChHH-------HH-HHHHHHHHcCCHHHHHHHHHHHHccCCCChhH--HHHHHHHHHhh
Q 004243 705 SKAIAFKPDLQM-------LH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMET--LDLYNRARDQA 761 (766)
Q Consensus 705 ~~al~~~p~~~~-------~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~ 761 (766)
+++....-+++. ++ .-|.|+.-..+.-.+...+++..+++|...+. ...+..+....
T Consensus 178 eqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ai 244 (288)
T KOG1586|consen 178 EQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAI 244 (288)
T ss_pred HHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 999776544432 22 45889988899999999999999999998665 33444444433
No 228
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=98.00 E-value=5.6e-05 Score=57.40 Aligned_cols=81 Identities=31% Similarity=0.391 Sum_probs=64.3
Q ss_pred eEEEE-cCeEEEeehHHHhcCCHHHHHHhcCCCc--cCCCCeEEecCCCCCHHHHHHHHHHh-----hcCC---CCC--C
Q 004243 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYT-----RTSR---VDL--F 123 (766)
Q Consensus 57 v~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~-----yt~~---~~~--~ 123 (766)
|+++- +|++|-..|-+ |.-|+-.|+||+|++. |...++|.+ ++++..+++.+.+|+ ||+. +.. +
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f--~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYF--RDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEe--ccchHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 55554 67888777765 4558999999998755 556679999 999999999999998 6665 221 8
Q ss_pred CHHHHHHHHHHhhhhCh
Q 004243 124 CPGIVLELLSFANRFCC 140 (766)
Q Consensus 124 ~~~~~~~~l~~a~~~~~ 140 (766)
+++.+++||.+|+.+.+
T Consensus 96 ppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 96 PPEMALELLMAANYLEC 112 (112)
T ss_pred CHHHHHHHHHHhhhhcC
Confidence 99999999999998753
No 229
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.00 E-value=3.4e-05 Score=67.82 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHh-------hh-------cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC--
Q 004243 633 LKAAYDEMTKLLEKAQYSASAFEKRS-------EY-------SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK-- 696 (766)
Q Consensus 633 ~~~A~~~~~~~l~~~p~~~~~~~~~~-------~~-------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 696 (766)
++.|.+.++.....+|.+.+.+.+.| .. .-+++|+.-|++++.++|+...+++.+|++|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 56777777777888888877766666 11 123666666777777777777777777777665532
Q ss_pred ---------HHHHHHHHHHHHhcCCChHHHH
Q 004243 697 ---------EVEAVEELSKAIAFKPDLQMLH 718 (766)
Q Consensus 697 ---------~~~A~~~~~~al~~~p~~~~~~ 718 (766)
|++|..+|++|...+|+++.+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 4555555555555666655543
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.97 E-value=8.6e-06 Score=63.63 Aligned_cols=68 Identities=21% Similarity=0.145 Sum_probs=56.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC-C---chhhHHHHHHHHHHCCCHHHHHHHHHHHHccc
Q 004243 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH---SS-S---EHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p-~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (766)
|+...++..+|.+|..+|++++|+..|++++++ .+ + ...++.++|.++...|++++|++++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 334567899999999999999999999999865 12 2 25678999999999999999999999999753
No 231
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.95 E-value=8.5e-06 Score=74.82 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=55.9
Q ss_pred CCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCC--CCeEEecCCCCCHHHHHHHHHHhhcCCCC
Q 004243 51 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESK--RKTIDFSHDGVSVEGLRAVEVYTRTSRVD 121 (766)
Q Consensus 51 ~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~--~~~i~~~~~~~~~~~~~~~l~~~yt~~~~ 121 (766)
-.-+.||-|+.....|||||++|++|||+|+.+.+.+-.-.. ...|+. -+++-++|..+|+++|||+.-
T Consensus 127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~--ag~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKF--AGFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhh--hccChHHHHHHHHHHHhcccc
Confidence 344559999999999999999999999999999865422111 125677 789999999999999999876
No 232
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.93 E-value=1.9e-05 Score=79.98 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=93.7
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQA 739 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~ 739 (766)
++++.|+..|.++++++|+++..+-+++..+.+.+++..|+..+.++++.+|.. ..++.+|.+....+.+.+|...|++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 567888899999999999999999999999999999999999999999999998 4555789999999999999999999
Q ss_pred HHccCCCChhHHHHHHHHHHhhhhh
Q 004243 740 ALCLDPNHMETLDLYNRARDQASHQ 764 (766)
Q Consensus 740 al~~~p~~~~~~~~l~~~~~~~~~~ 764 (766)
...+.|+++.+...+...+...++.
T Consensus 98 ~~~l~Pnd~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKIDECNKIVSEE 122 (476)
T ss_pred hhhcCcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888776653
No 233
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.92 E-value=4.1e-05 Score=67.36 Aligned_cols=94 Identities=20% Similarity=0.202 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhC----------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCC---
Q 004243 664 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDD----------QKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGD--- 729 (766)
Q Consensus 664 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~--- 729 (766)
+.|.+.++.....+|.+++.+++-|.++..+ .-+++|+.-|++|+.++|+. .+++.+|.+|...+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 5677777778888888888888877777655 34578888888888888888 666678877776543
Q ss_pred --------HHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 730 --------LTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 730 --------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
+++|..+|++|...+|++......|.-.
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7788888888888888876655555433
No 234
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.84 E-value=1.5e-05 Score=49.94 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Q 004243 340 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAI 372 (766)
Q Consensus 340 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~ 372 (766)
+|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999986
No 235
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=6.5e-05 Score=68.61 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=79.8
Q ss_pred HHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHH-HHHHHHHHhhhhHH
Q 004243 326 QERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCL-ELRAWLFIAADDYE 402 (766)
Q Consensus 326 ~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~~~~~g~~~ 402 (766)
.|+.++....+ |+.+|.++|.++|+.+..|.+++.|+++..+++.+...+.+++++.|+.... +.+|........|+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 34445545554 9999999999999999999999999999999999999999999999976654 45999999999999
Q ss_pred HHHHHHHHHHhccCCc
Q 004243 403 SALRDTLALLALESNY 418 (766)
Q Consensus 403 ~A~~~~~~al~~~p~~ 418 (766)
+|+..++++..+....
T Consensus 96 eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999997654333
No 236
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.77 E-value=5.9e-05 Score=50.90 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHH
Q 004243 716 MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 756 (766)
Q Consensus 716 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 756 (766)
.++.+|.+|...|++++|++.|+++++.+|++++++..+++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45577888888888888888888888888888888777664
No 237
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0028 Score=59.06 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=96.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHH
Q 004243 391 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 470 (766)
Q Consensus 391 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al 470 (766)
+..++.-.|.|.-.+..+.++++.+|...+ .....+|.+..+.|+.+.|..+++.-++ -..-+
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p-----~L~s~Lgr~~MQ~GD~k~a~~yf~~vek------------~~~kL 245 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEP-----QLLSGLGRISMQIGDIKTAEKYFQDVEK------------VTQKL 245 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccH-----HHHHHHHHHHHhcccHHHHHHHHHHHHH------------HHhhh
Confidence 555566666666666666666666533322 2455566666666666666544321111 01112
Q ss_pred HcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 471 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
..-........+.+.++...+++..|...+.+.+..+|.++.+..+.+.|+...|+...|++..+.++...|..
T Consensus 246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 22223445667788888999999999999999999999999999999999999999999999999999999986
No 238
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00053 Score=62.96 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=64.8
Q ss_pred CCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhH
Q 004243 679 LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMET 750 (766)
Q Consensus 679 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 750 (766)
.....+.+.+.+++..|+|-++++....++...|++ .+++.+|.++...=+..+|...|.++|+++|.-..+
T Consensus 228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 345678899999999999999999999999999999 677799999999999999999999999999986543
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.75 E-value=6.6e-05 Score=50.64 Aligned_cols=42 Identities=19% Similarity=0.014 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHH
Q 004243 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 519 (766)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~ 519 (766)
.++..+|..|..+|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467777777888888888888888888888887777777664
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0043 Score=57.24 Aligned_cols=127 Identities=16% Similarity=0.126 Sum_probs=75.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCc------hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHH
Q 004243 482 RQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 555 (766)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 555 (766)
..+--.....++++|++.|++++.+...+ .+.+...+.++.+...+++|...+.+-....-....+
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y-------- 186 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY-------- 186 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc--------
Confidence 33334445567788888888776553322 3344556777888888888877776644322111000
Q ss_pred hcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC------ChHHHHHHHHHHHH
Q 004243 556 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYL 629 (766)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~la~~~~~ 629 (766)
-.+...+.....+|+...+|..|..+|+..-++. +..+..+|-.. +.
T Consensus 187 --------------------------~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd 239 (308)
T KOG1585|consen 187 --------------------------NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YD 239 (308)
T ss_pred --------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hc
Confidence 0012334555566677789999999999987772 23455555555 46
Q ss_pred hccHHHHHHHHHHH
Q 004243 630 KNELKAAYDEMTKL 643 (766)
Q Consensus 630 ~g~~~~A~~~~~~~ 643 (766)
.|+.++....+..-
T Consensus 240 ~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 240 EGDIEEIKKVLSSP 253 (308)
T ss_pred cCCHHHHHHHHcCh
Confidence 67776666555433
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.70 E-value=2.8e-05 Score=48.71 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=26.8
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhCCCHHHHH
Q 004243 670 LNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV 701 (766)
Q Consensus 670 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 701 (766)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67788888888888888888888888888875
No 242
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00024 Score=65.01 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=77.2
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQA 739 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~ 739 (766)
.++..|+.+|.+++.++|..+..|.+.+.++++.++++.+.....+++++.|+. ...+.+|.+......+++|+..+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 345788888888888888888888899999999999999999999999999988 4555888888888999999999999
Q ss_pred HHccCC-----CChhHHHHHHHHH
Q 004243 740 ALCLDP-----NHMETLDLYNRAR 758 (766)
Q Consensus 740 al~~~p-----~~~~~~~~l~~~~ 758 (766)
+..+.- .-.+....|..++
T Consensus 104 a~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 104 AYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHHHHhcCCCCCcchHHHHHHHHH
Confidence 865521 1234555555554
No 243
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.67 E-value=9.9e-05 Score=74.94 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=85.3
Q ss_pred HHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHH
Q 004243 326 QERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYE 402 (766)
Q Consensus 326 ~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~ 402 (766)
.++..+....+ |+..|.|||+++|+++..+-+++.++.+.+++..|+..+.++++.+|.....|. .|......+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34444445554 999999999999999999999999999999999999999999999997666555 999999999999
Q ss_pred HHHHHHHHHHhccCCccc
Q 004243 403 SALRDTLALLALESNYMM 420 (766)
Q Consensus 403 ~A~~~~~~al~~~p~~~~ 420 (766)
+|+..|++...+.|+++.
T Consensus 90 ~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHhhhcCcCcHH
Confidence 999999999999999994
No 244
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.66 E-value=0.0069 Score=62.86 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=84.9
Q ss_pred cCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLR-TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 738 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 738 (766)
|+...|+.++..|+...|.. .....++|.+..+.|-...|-..+.+++.++...+..+ .+|..+..+.+.+.|++.|+
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 66689999999999888854 45678999999999999999999999999985555544 78999999999999999999
Q ss_pred HHHccCCCChhHHHHHHHHH
Q 004243 739 AALCLDPNHMETLDLYNRAR 758 (766)
Q Consensus 739 ~al~~~p~~~~~~~~l~~~~ 758 (766)
.|++++|++++...-+..+.
T Consensus 701 ~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 701 QALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHhcCCCChhhHHHHHHHH
Confidence 99999999999877776554
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.59 E-value=0.097 Score=56.41 Aligned_cols=157 Identities=16% Similarity=-0.012 Sum_probs=115.8
Q ss_pred HhhHHHHHHhCCHHHHHHHHHHHHccCChH---------HHHHHHHHHH----HhccHHHHHHHHHHHHHhccCCHHHHH
Q 004243 589 NNLGSIYVECGKLDQAENCYINALDIKHTR---------AHQGLARVYY----LKNELKAAYDEMTKLLEKAQYSASAFE 655 (766)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~la~~~~----~~g~~~~A~~~~~~~l~~~p~~~~~~~ 655 (766)
..+-.+.--.|+-+.+++.+.++.+..... .|+....... .....+.|.+.+....+..|+......
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 333444445688888888888887753221 1111111111 234577889999999999999888888
Q ss_pred HHh----hhcCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH--HHHHHHH
Q 004243 656 KRS----EYSDREMAKNDLNMATQLDPLR----TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH--LRAAFYE 725 (766)
Q Consensus 656 ~~~----~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~la~~~~ 725 (766)
..| ..|+.++|++.|++++...... .-.++.+|+++.-+.+|++|..++.+..+.+.-..+.| ..|.++.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 777 4588999999999888533322 45678999999999999999999999999877776655 6799999
Q ss_pred HcCCH-------HHHHHHHHHHHccCC
Q 004243 726 SIGDL-------TSAIRDSQAALCLDP 745 (766)
Q Consensus 726 ~~g~~-------~~A~~~~~~al~~~p 745 (766)
..|+. ++|.+.+.++-.+-.
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999 899999988876643
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.59 E-value=0.00011 Score=46.30 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=30.4
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIY 289 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 289 (766)
+.+|+.+|.+++..|++++|+..|+++++++|.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4679999999999999999999999999999864
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.011 Score=54.72 Aligned_cols=202 Identities=14% Similarity=0.086 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHH
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLK 550 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 550 (766)
...+..-+.+|...+++++|...+.++.+-..++ +.++-..|.+......+.++..+|+++..+.-.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~------ 104 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC------ 104 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh------
Confidence 3456666778888899999999999888543333 2344555666777777888888888877643222
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc---CC-----hHHHHH
Q 004243 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI---KH-----TRAHQG 622 (766)
Q Consensus 551 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~-----~~~~~~ 622 (766)
| .|.....++ ..+--..+..++++|++.|++++.+ +. .+.+-.
T Consensus 105 -------G-spdtAAmal---------------------eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 105 -------G-SPDTAAMAL---------------------EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred -------C-CcchHHHHH---------------------HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 2 111111111 1122234466788888888888776 11 134556
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHH
Q 004243 623 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 702 (766)
Q Consensus 623 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 702 (766)
.++++.+..++.+|-..+.+-....- -....|.....+...-.+++...+|..|..
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~------------------------~~~~y~~~~k~~va~ilv~L~~~Dyv~aek 211 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAAD------------------------KCDAYNSQCKAYVAAILVYLYAHDYVQAEK 211 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHH------------------------HHhhcccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 67777888888777666655432210 001112222334444445555567777777
Q ss_pred HHHHHHhcC----CCh-HHHHHHHHHHHHcCCHHHHHHHHH
Q 004243 703 ELSKAIAFK----PDL-QMLHLRAAFYESIGDLTSAIRDSQ 738 (766)
Q Consensus 703 ~~~~al~~~----p~~-~~~~~la~~~~~~g~~~~A~~~~~ 738 (766)
+++..-++. |+. ..+.++-..| ..|+.++....+.
T Consensus 212 c~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 212 CYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 777765542 222 2233333333 3566666655553
No 248
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0014 Score=65.36 Aligned_cols=87 Identities=17% Similarity=0.061 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 666 AKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ----MLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 666 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
|...|+.+++..|.+...|......+...|+.+.|...|++++..-|... .|......-...|+.+...+.++++.
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444555555555566666667777777777777777777755554 34455666666778888888888887
Q ss_pred ccCCCChhHHH
Q 004243 742 CLDPNHMETLD 752 (766)
Q Consensus 742 ~~~p~~~~~~~ 752 (766)
+..|+......
T Consensus 135 ~~~~~~~~~~~ 145 (280)
T PF05843_consen 135 ELFPEDNSLEL 145 (280)
T ss_dssp HHTTTS-HHHH
T ss_pred HHhhhhhHHHH
Confidence 77777554443
No 249
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0019 Score=59.43 Aligned_cols=69 Identities=10% Similarity=0.028 Sum_probs=65.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
....+.+.+.+++..|+|-++++.....+...|.+..+++..|.++...-+.++|...|.++++++|..
T Consensus 229 ~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 345778899999999999999999999999999999999999999999999999999999999999987
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.53 E-value=0.017 Score=58.65 Aligned_cols=173 Identities=15% Similarity=0.069 Sum_probs=122.8
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHcc------CChHHHHHHHHHHHH---hccHHHHHHHHHHH-HHhccCCHHHH
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDI------KHTRAHQGLARVYYL---KNELKAAYDEMTKL-LEKAQYSASAF 654 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~la~~~~~---~g~~~~A~~~~~~~-l~~~p~~~~~~ 654 (766)
+....++-..|....+|+.=++..+..-.+ +.+...+.+|.++.+ .|+.++|+..+..+ ....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455667777889999999988888877666 244567788888888 89999999999884 45556777777
Q ss_pred HHHhh-------------hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHH--------hc---
Q 004243 655 EKRSE-------------YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI--------AF--- 710 (766)
Q Consensus 655 ~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~--- 710 (766)
...|. ....++|+..|.++.+++| +...-.|++.++...|.-.+.....++.. +.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 77771 1235999999999999996 45666677777777776544443333322 11
Q ss_pred --CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q 004243 711 --KPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 758 (766)
Q Consensus 711 --~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 758 (766)
.++.+.+-.++.+..-.|++++|++.+++++++.|..-+....+..++
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIK 349 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 112233336778888899999999999999999887655444444433
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.52 E-value=0.00014 Score=45.83 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 004243 682 YPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 713 (766)
Q Consensus 682 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 713 (766)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 252
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.08 Score=48.90 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=70.4
Q ss_pred hhHHhhHHHHHHh-CCHHHHHHHHHHHHcc---CC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHH
Q 004243 586 QALNNLGSIYVEC-GKLDQAENCYINALDI---KH-----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK 656 (766)
Q Consensus 586 ~~~~~lg~~~~~~-g~~~~A~~~~~~al~~---~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 656 (766)
..+..+|.+|... .++++|+.+|+++-+. .. ...+...+..-...+++.+|+..|++.....-++...-+.
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 3466788888765 8899999999988776 11 1345556666667788888888888776554443322110
Q ss_pred HhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 657 RSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 657 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
. -..++.-|.+++...+.-.+...+++..+++|..
T Consensus 194 ~-----------------------KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 194 A-----------------------KDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred H-----------------------HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 0 1223445667777778888888888888888876
No 253
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.28 Score=54.96 Aligned_cols=231 Identities=14% Similarity=0.062 Sum_probs=150.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHH
Q 004243 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 554 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l 554 (766)
+.+..|..+|.+.++.|...+|++.|-+ .++|..+.....+..+.|.|++-++++..+-+.-.....-..+..++
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 5688999999999999999999999876 36677888888999999999999999988776543331222333344
Q ss_pred HhcCCCCCChHHHHHHHHHHHhchhhccccc-hhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccH
Q 004243 555 ADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNEL 633 (766)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~ 633 (766)
+..+ .++..++-+. .|. .-....|.-.+..|.|+.|.-+|.. ..-|..++..+...|++
T Consensus 1177 Akt~--------rl~elE~fi~------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------vSN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1177 AKTN--------RLTELEEFIA------GPNVANIQQVGDRCFEEKMYEAAKLLYSN------VSNFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHhc--------hHHHHHHHhc------CCCchhHHHHhHHHhhhhhhHHHHHHHHH------hhhHHHHHHHHHHHHHH
Confidence 4433 0111222111 122 2245678888888999999888864 35678889999999999
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004243 634 KAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDP-LRTYPYRYRAAVLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 634 ~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 708 (766)
..|.+.-+++- +...|...+ ..+.+.-|.- ..++- -.+.-+-.+-..|...|-+++-+..++.++
T Consensus 1237 Q~AVD~aRKAn-----s~ktWK~VcfaCvd~~EFrlAQi-----CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1237 QGAVDAARKAN-----STKTWKEVCFACVDKEEFRLAQI-----CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHhhhcc-----chhHHHHHHHHHhchhhhhHHHh-----cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 99998877763 233343333 1111111111 11110 113445567778889999999999999998
Q ss_pred hcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 709 AFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 709 ~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
.+...+ ..+.-+|.+|.+ =++++-.+.++-..
T Consensus 1307 GLERAHMgmfTELaiLYsk-ykp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1307 GLERAHMGMFTELAILYSK-YKPEKMMEHLKLFW 1339 (1666)
T ss_pred chhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 887666 444467777764 34555555554433
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.48 E-value=0.00021 Score=45.03 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=30.2
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIY 289 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 289 (766)
+.+++.+|.+++..|++++|+..|+++++++|.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578999999999999999999999999998864
No 255
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00093 Score=64.41 Aligned_cols=104 Identities=16% Similarity=0.065 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHh
Q 004243 252 RWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY 331 (766)
Q Consensus 252 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (766)
+...|.-|-.-|+-|++.++|..|+..|.+.+...-..... .+.+|.++..+...++
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl-navLY~NRAAa~~~l~---------------------- 133 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL-NAVLYTNRAAAQLYLG---------------------- 133 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH-HHHHHhhHHHHHHHHH----------------------
Confidence 34578888899999999999999999999999873222211 1222333332222111
Q ss_pred ccCcHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 332 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 379 (766)
Q Consensus 332 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 379 (766)
+.+.|+....+++..+|++..+++.-|.|++.+.++.+|...++..+
T Consensus 134 -NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 134 -NYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred -HHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 22235555555555555555555555555555555555555555554
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.45 E-value=0.0081 Score=61.73 Aligned_cols=166 Identities=11% Similarity=-0.010 Sum_probs=101.8
Q ss_pred hhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------------
Q 004243 451 YDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--------------------- 509 (766)
Q Consensus 451 ~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--------------------- 509 (766)
+..|...+....++...++++++|+.+.+|..++.-. ..-..+|.+.++++++....
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R 253 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR 253 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence 4445555555568888999999999999998887632 22345666666665543110
Q ss_pred c----hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccc
Q 004243 510 E----HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (766)
Q Consensus 510 ~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 585 (766)
+ ..+...+|.+..+.|+.++|++.++..++.+|..+ ..
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~--------------------------------------~l 295 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD--------------------------------------NL 295 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc--------------------------------------hh
Confidence 0 22345678889999999999999999988776530 01
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHH-------------hcc---HHHHHHHHHHHHHh
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYL-------------KNE---LKAAYDEMTKLLEK 646 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~la~~~~~-------------~g~---~~~A~~~~~~~l~~ 646 (766)
.++.++..+++..+.|.++...+.+--++. .....+..|.+..+ .|- -..|.+.+.++++.
T Consensus 296 ~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 296 NIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 345667777777777777777776654331 12222222222111 110 12356677777777
Q ss_pred ccCCHHHHHH
Q 004243 647 AQYSASAFEK 656 (766)
Q Consensus 647 ~p~~~~~~~~ 656 (766)
+|..+..+..
T Consensus 376 NPHVp~YLLe 385 (539)
T PF04184_consen 376 NPHVPKYLLE 385 (539)
T ss_pred CCCCchhhhc
Confidence 7776665443
No 257
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.35 Score=54.22 Aligned_cols=234 Identities=13% Similarity=0.013 Sum_probs=142.6
Q ss_pred CchhHHHHHHHHhccCc--HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 004243 319 KPTGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFI 396 (766)
Q Consensus 319 ~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~ 396 (766)
.|..|..++.+.+..+. +|+..|-+| +++..|........+.|.|++-+.++.-+-+....+..-..+...|.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 46677777777776665 377777443 56667777777777778888777777766543332222222444555
Q ss_pred hhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCC
Q 004243 397 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 476 (766)
Q Consensus 397 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~ 476 (766)
+.++..+-.+.. ..|+... ....|.-....+.|+.|.-. -.+
T Consensus 1178 kt~rl~elE~fi-----~gpN~A~-------i~~vGdrcf~~~~y~aAkl~--------------------------y~~ 1219 (1666)
T KOG0985|consen 1178 KTNRLTELEEFI-----AGPNVAN-------IQQVGDRCFEEKMYEAAKLL--------------------------YSN 1219 (1666)
T ss_pred HhchHHHHHHHh-----cCCCchh-------HHHHhHHHhhhhhhHHHHHH--------------------------HHH
Confidence 666655533322 2455542 23333333333444444211 123
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------C--------------CchhhHHHHHHHHHHCCCHHHHH
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-----------S--------------SEHERLVYEGWILYDTGHREEAL 531 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----------p--------------~~~~~~~~lg~~~~~~g~~~~A~ 531 (766)
..-|..++..+..+|+|..|...-++|-... . -+++-+-.+...|...|-+++-+
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHH
Confidence 4456778888888888888888777653220 0 01333455667788899999999
Q ss_pred HHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcc------------ccchhHHhhHHHHHHh
Q 004243 532 SRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL------------RKGQALNNLGSIYVEC 598 (766)
Q Consensus 532 ~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l------------~~~~~~~~lg~~~~~~ 598 (766)
..++.++-+...+ ..+..++..++... +++..+.++-.+ +....|..+..+|.+-
T Consensus 1300 sl~Ea~LGLERAHMgmfTELaiLYskyk------------p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1300 SLLEAGLGLERAHMGMFTELAILYSKYK------------PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHhhhchhHHHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999888888 77777887777653 333333322211 1246788888888888
Q ss_pred CCHHHHHHH
Q 004243 599 GKLDQAENC 607 (766)
Q Consensus 599 g~~~~A~~~ 607 (766)
..|+.|.-.
T Consensus 1368 ~eyDNAa~t 1376 (1666)
T KOG0985|consen 1368 EEYDNAALT 1376 (1666)
T ss_pred hhhhHHHHH
Confidence 888776543
No 258
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.0096 Score=53.35 Aligned_cols=88 Identities=19% Similarity=0.132 Sum_probs=67.1
Q ss_pred hhcCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHcCCHHHH
Q 004243 659 EYSDREMAKNDLNMATQLDPLR---TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM--LHLRAAFYESIGDLTSA 733 (766)
Q Consensus 659 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~la~~~~~~g~~~~A 733 (766)
+.+++++|+..++.++....+. +-+-..+|.+..++|++++|+..+...- +++... ...+|.++...|+.++|
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHH
Confidence 4467777777777777543322 4556789999999999999999987643 233333 33789999999999999
Q ss_pred HHHHHHHHccCCCCh
Q 004243 734 IRDSQAALCLDPNHM 748 (766)
Q Consensus 734 ~~~~~~al~~~p~~~ 748 (766)
+..|+++++.+++.+
T Consensus 179 r~ay~kAl~~~~s~~ 193 (207)
T COG2976 179 RAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHccCChH
Confidence 999999999986543
No 259
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.41 E-value=0.22 Score=51.87 Aligned_cols=409 Identities=12% Similarity=0.017 Sum_probs=235.0
Q ss_pred CCchhHHHHHHHHhccCc-HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHH
Q 004243 318 HKPTGWMYQERSLYNLGR-EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLF 395 (766)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~ 395 (766)
.+..+|..+-+.+-.+.- +....|++.+...|..+.+|.......+..++|+.-...|.+.+...-+-+.|.. +-.+.
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR 97 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVR 97 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 445667666666554422 3888999999999999999999999999999999999999999865555444544 44444
Q ss_pred HhhhhHHHHH----HHHHHHHh---ccCCcccccccchhhhHHhHHH---HHHhhhchHhhHHHhhhhhcccCcccc-HH
Q 004243 396 IAADDYESAL----RDTLALLA---LESNYMMFHGRVSGDHLVKLLN---HHVRSWSPADCWIKLYDRWSSVDDIGS-LA 464 (766)
Q Consensus 396 ~~~g~~~~A~----~~~~~al~---~~p~~~~~~~~~~a~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~-l~ 464 (766)
...|+...+. +.|+-++. .++.... .|....... ...|.|++-. .+.+ -.
T Consensus 98 ~~~~~~~~~r~~m~qAy~f~l~kig~di~s~s------iW~eYi~FL~~vea~gk~ee~Q-------------RI~~vRr 158 (656)
T KOG1914|consen 98 ETKGKLFGYREKMVQAYDFALEKIGMDIKSYS------IWDEYINFLEGVEAVGKYEENQ-------------RITAVRR 158 (656)
T ss_pred HHccCcchHHHHHHHHHHHHHHHhccCcccch------hHHHHHHHHHcccccccHHHHH-------------HHHHHHH
Confidence 4445444433 34444444 2233221 222222221 2223333221 0001 12
Q ss_pred HHHHHHHcCCCChh-HHH-------------HHHHHHHhcCCHHHHHHHHHHHHhc-------CCC----c-------hh
Q 004243 465 VINQMLINDPGKSF-LRF-------------RQSLLLLRLNCQKAAMRCLRLARNH-------SSS----E-------HE 512 (766)
Q Consensus 465 ~~~~al~~~p~~~~-~~~-------------~la~~~~~~g~~~~A~~~~~~a~~~-------~p~----~-------~~ 512 (766)
.|++++...-.+.+ .|. ..-.+--+...|..|...++....+ +|. . .+
T Consensus 159 iYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~ 238 (656)
T KOG1914|consen 159 IYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVE 238 (656)
T ss_pred HHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHH
Confidence 34444443222211 111 1111222334566666666544322 111 0 11
Q ss_pred hHHHHHHHHHHC------CCH--HHHHHHHHHHHccccch-HHHHHHHHHHHhcC---CCCCChHHHHHHHHHHHhchhh
Q 004243 513 RLVYEGWILYDT------GHR--EEALSRAEKSISIERTF-EAFFLKAYILADTN---LDPESSTYVIQLLEEALRCPSD 580 (766)
Q Consensus 513 ~~~~lg~~~~~~------g~~--~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~A~~~~~~ 580 (766)
.|.++...-... |.. ..-.-.|++++..-+-+ +.|+..+.-+...+ ...+....+...-+++..+|++
T Consensus 239 ~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr 318 (656)
T KOG1914|consen 239 LWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYER 318 (656)
T ss_pred HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHH
Confidence 232222221111 111 11122345555544444 44544443332222 1122233333456777788887
Q ss_pred cccc-----chhHHhhHHHHHHhC---CHHHHHHHHHHHHcc---CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccC
Q 004243 581 GLRK-----GQALNNLGSIYVECG---KLDQAENCYINALDI---KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 649 (766)
Q Consensus 581 ~l~~-----~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 649 (766)
++.. ...++.++.--...- +++.-...+++.+.+ ++.-+|..+-..-.+..-.+.|...|.++-+..-.
T Consensus 319 ~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~ 398 (656)
T KOG1914|consen 319 AIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT 398 (656)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC
Confidence 7652 133333333222222 366667778888777 34456766666666666688889999998765444
Q ss_pred CHHHHHHHh-----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCh--HHHHHH
Q 004243 650 SASAFEKRS-----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF--KPDL--QMLHLR 720 (766)
Q Consensus 650 ~~~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~l 720 (766)
.-.++...+ ..++.+-|...|+-.++..++.+..-......+...++-..|...|++++.. .|+- +.|-..
T Consensus 399 ~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~ 478 (656)
T KOG1914|consen 399 RHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRM 478 (656)
T ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHH
Confidence 334444444 4588999999999999999999988888888999999999999999999987 4444 444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCC
Q 004243 721 AAFYESIGDLTSAIRDSQAALCLDP 745 (766)
Q Consensus 721 a~~~~~~g~~~~A~~~~~~al~~~p 745 (766)
-..-..-|+...+++.=++-....|
T Consensus 479 l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 479 LEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhcc
Confidence 5555667898888888777766666
No 260
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.41 E-value=0.00079 Score=46.77 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhhh
Q 004243 716 MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQ 764 (766)
Q Consensus 716 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 764 (766)
.+|.+|..+.++|+|++|..+.+.+|+++|++..+..+...++..++++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kd 51 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKD 51 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhcc
Confidence 4678899999999999999999999999999999999999999888765
No 261
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.41 E-value=0.37 Score=54.30 Aligned_cols=442 Identities=19% Similarity=0.168 Sum_probs=227.9
Q ss_pred HHHHh-hcchhhHHHHHHHHHhhhHHh-hcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCC
Q 004243 242 LERLG-ECSTERWQRMLALHQLGCVMF-EREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHK 319 (766)
Q Consensus 242 l~~~~-~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~ 319 (766)
|+-+. .....+...+.+++.+|.+++ ...+++.|..++++++.+........+ .+
T Consensus 44 L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~---k~-------------------- 100 (608)
T PF10345_consen 44 LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL---KF-------------------- 100 (608)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH---HH--------------------
Confidence 33344 455556678999999999998 789999999999999887543222200 00
Q ss_pred chhHHHHHHHHhccCcH-HHHHHHHHHhcCCC---CchHH---HHHHHHHHHcCCHHHHHHHHHHHHccCC---CHHH--
Q 004243 320 PTGWMYQERSLYNLGRE-KIVDLNYASELDPT---LSFPY---KYRAVAKMEEGQIRAAISEIDRIIVFKL---SVDC-- 387 (766)
Q Consensus 320 ~~~~~~~~~~~~~~~~~-A~~~~~~al~~~p~---~~~~~---~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~-- 387 (766)
.....++..+...+.. |...+++.|+...+ ....| +.+.......+++..|++.++....... ++..
T Consensus 101 -~~~~ll~~i~~~~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 101 -RCQFLLARIYFKTNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred -HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 0001112222223322 55556665554332 22222 1223333334789999999988876552 2221
Q ss_pred --HHHHHHHHHhhhhHHHHHHHHHHHHhc------cCCcccccccchhhhHHhHHH--HHHhhhchHhhHHHhhhh----
Q 004243 388 --LELRAWLFIAADDYESALRDTLALLAL------ESNYMMFHGRVSGDHLVKLLN--HHVRSWSPADCWIKLYDR---- 453 (766)
Q Consensus 388 --~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~a~~~l~~~~--~~~~~~~~A~~~~~~~~~---- 453 (766)
....+.+....+..+++++..+++... +|+. ......++..+-.+. ...+++..+...++....
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~--~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV--HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC--CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 112566677778788888888777442 2222 111123444444333 223333344433322111
Q ss_pred ------hcccCccccHHHH--HH---------HHHcCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------
Q 004243 454 ------WSSVDDIGSLAVI--NQ---------MLINDPG---KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS------ 507 (766)
Q Consensus 454 ------~~~~~~~~~l~~~--~~---------al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------ 507 (766)
|...++.+.+..- .. .+.--|. ..-.+..-|......+..++|.+.++++++.-
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 1111111111000 00 0000000 01234444566666676667777777665421
Q ss_pred -CCc-------------------hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHH
Q 004243 508 -SSE-------------------HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 566 (766)
Q Consensus 508 -p~~-------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~ 566 (766)
+.. ....+..+.+..-.|++..|....+.+....... ..
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~-------------------- 397 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSK-------------------- 397 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccc--------------------
Confidence 110 0123445667777888888887777666543211 00
Q ss_pred HHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHH--------HHHccC-ChH----HHHHHHHHHHHhccH
Q 004243 567 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYI--------NALDIK-HTR----AHQGLARVYYLKNEL 633 (766)
Q Consensus 567 ~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~--------~al~~~-~~~----~~~~la~~~~~~g~~ 633 (766)
.-+.. .+..++..|..+...|+.+.|...|. .+...+ ..+ +..++..++...+..
T Consensus 398 ----~~~~~--------~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~ 465 (608)
T PF10345_consen 398 ----LYESL--------YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSR 465 (608)
T ss_pred ----hhhhh--------hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhccc
Confidence 00000 14567888999999999999999998 222332 222 456666776666553
Q ss_pred HHHHHHHHHHHH-hcc---CCHHHHHHHh-----------hhcCHHHHHHHHHHHHhcC-C--C----CchhHHHHHHHH
Q 004243 634 KAAYDEMTKLLE-KAQ---YSASAFEKRS-----------EYSDREMAKNDLNMATQLD-P--L----RTYPYRYRAAVL 691 (766)
Q Consensus 634 ~~A~~~~~~~l~-~~p---~~~~~~~~~~-----------~~~~~~~A~~~~~~al~~~-p--~----~~~~~~~la~~~ 691 (766)
........++++ +.| +.+..+...+ ..-...++...+..+++.. . . ..-++..+|..+
T Consensus 466 ~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~l 545 (608)
T PF10345_consen 466 DDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRL 545 (608)
T ss_pred chhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 332212333332 222 1111111111 1112236666666665443 1 1 144566777777
Q ss_pred HhCCCHHHHHHHHHHHHhc---CCCh--HHHH-----HHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 692 MDDQKEVEAVEELSKAIAF---KPDL--QMLH-----LRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 692 ~~~g~~~~A~~~~~~al~~---~p~~--~~~~-----~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
+ .|+..+..+....+... .|+. ..|. .+...+...|+.++|.....+.-.
T Consensus 546 f-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 546 F-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred H-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 7 78888877776666554 2333 3443 456778889999999988877643
No 262
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.39 E-value=0.0001 Score=71.15 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=70.2
Q ss_pred hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHH
Q 004243 660 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQ 738 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~ 738 (766)
.|.+++|++.|..+++++|.....|..+|.++++++++..|+..+..+++++|+...-+ .+|.....+|++++|..++.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888884444 77888888888888888888
Q ss_pred HHHccCCC
Q 004243 739 AALCLDPN 746 (766)
Q Consensus 739 ~al~~~p~ 746 (766)
.+.+++-+
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 88887654
No 263
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.38 E-value=0.0062 Score=60.82 Aligned_cols=137 Identities=10% Similarity=0.021 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH-CCCHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Q 004243 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD-TGHREEALSRAEKSISIERTFEAFFLKAYILADT 557 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 557 (766)
+|..+.....+.+..+.|...|.+|.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------------- 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------------- 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-------------
Confidence 566667777777789999999999997767778899999999777 566666999999999988887
Q ss_pred CCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-----ChHHHHHHHHHHHHhcc
Q 004243 558 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNE 632 (766)
Q Consensus 558 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~la~~~~~~g~ 632 (766)
...|......+...|+.+.|...|++++..- ....|......-...|+
T Consensus 70 ---------------------------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 70 ---------------------------PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp ---------------------------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred ---------------------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence 4445555667778889999999999999872 23478888888889999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHH
Q 004243 633 LKAAYDEMTKLLEKAQYSASAFE 655 (766)
Q Consensus 633 ~~~A~~~~~~~l~~~p~~~~~~~ 655 (766)
.+......+++.+..|+......
T Consensus 123 l~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 123 LESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999888655433
No 264
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.37 E-value=0.00036 Score=43.98 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHHccccc
Q 004243 512 ERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (766)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (766)
.+++.+|.++...|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45666777777777777777777777776665
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.019 Score=55.60 Aligned_cols=125 Identities=10% Similarity=-0.044 Sum_probs=92.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHH
Q 004243 390 LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 469 (766)
Q Consensus 390 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~a 469 (766)
..+.+....|++.+|...+++.++-.|.+.. ++...-..+...|+...- ...++++
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDll------a~kfsh~a~fy~G~~~~~------------------k~ai~kI 163 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLL------AVKFSHDAHFYNGNQIGK------------------KNAIEKI 163 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhh------hhhhhhhHHHhccchhhh------------------hhHHHHh
Confidence 3566667789999999999999999999874 333333333333332221 2334566
Q ss_pred HHc-CCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004243 470 LIN-DPGKS---FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 538 (766)
Q Consensus 470 l~~-~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (766)
+.. +|+.| .+.-..+..+...|-|++|.+.-+++++++|.+..+...++.++...|++.++.+...+.-
T Consensus 164 ip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 164 IPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred ccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 555 55553 3344567778899999999999999999999999999999999999999999999887643
No 266
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.29 E-value=0.054 Score=59.85 Aligned_cols=260 Identities=17% Similarity=0.040 Sum_probs=179.4
Q ss_pred CChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHh-----cCCCchhhHHHHHHHHHHCC-----CHHHHHHHHHHHHc
Q 004243 475 GKSFLRFRQSLLLLRL-----NCQKAAMRCLRLARN-----HSSSEHERLVYEGWILYDTG-----HREEALSRAEKSIS 539 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~-----~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~ 539 (766)
.+..+...+|.+|..- .+.+.|+.+++.+.. ..-..+.+.+.+|.+|.+.. +++.|..+|.++..
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 3666777788777653 688999999998866 11125668889999998853 67889999999987
Q ss_pred cccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc--chhHHhhHHHHHHh----CCHHHHHHHHHHHHc
Q 004243 540 IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK--GQALNNLGSIYVEC----GKLDQAENCYINALD 613 (766)
Q Consensus 540 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~lg~~~~~~----g~~~~A~~~~~~al~ 613 (766)
.... .+.+.++..+.... + ..+...|.++|..+.+. ..+.+.++.+|..- -+...|..+|.++.+
T Consensus 322 ~g~~-~a~~~lg~~~~~g~--~------~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~ 392 (552)
T KOG1550|consen 322 LGNP-DAQYLLGVLYETGT--K------ERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAE 392 (552)
T ss_pred cCCc-hHHHHHHHHHHcCC--c------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHH
Confidence 6544 34555665554332 1 12667888888888764 47888888888653 578899999999999
Q ss_pred cCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhccCCHH----HHHHHh--------hhcCHHHHHHHHHHHHhcCCCC
Q 004243 614 IKHTRAHQGLARVYYLK-NELKAAYDEMTKLLEKAQYSAS----AFEKRS--------EYSDREMAKNDLNMATQLDPLR 680 (766)
Q Consensus 614 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~----~~~~~~--------~~~~~~~A~~~~~~al~~~p~~ 680 (766)
.+++.+...++..+..- +.++.+.-.+....+..-.... .+.... ...+...+...+.++.. ..+
T Consensus 393 ~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~ 470 (552)
T KOG1550|consen 393 KGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGN 470 (552)
T ss_pred ccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccC
Confidence 98877777777665544 6666666555554443322211 111111 12244566666666543 356
Q ss_pred chhHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHccCCCC
Q 004243 681 TYPYRYRAAVLMDD----QKEVEAVEELSKAIAFKPDLQMLHLRAAFYESI---GDLTSAIRDSQAALCLDPNH 747 (766)
Q Consensus 681 ~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 747 (766)
+.+...+|.+|... .+++.|...|.++.... ....+++|..+..- .....|..+|.++.+.++..
T Consensus 471 ~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 471 ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 78888899888765 46999999999998777 66777999998762 22789999999999877653
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.29 E-value=0.012 Score=60.67 Aligned_cols=180 Identities=13% Similarity=0.027 Sum_probs=115.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCCh
Q 004243 485 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 564 (766)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 564 (766)
.-..+..+.++-++.-.+|++++|+.++++..++.-. ..-..+|.++|+++++..... ..........+
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g------ 244 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEAS---LGKSQFLQHHG------ 244 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHh---hchhhhhhccc------
Confidence 3344667888999999999999999999988876432 334688888999888754332 00000000000
Q ss_pred HHHHHHHHHHHhchhhcccc-chhHHhhHHHHHHhCCHHHHHHHHHHHHccC----ChHHHHHHHHHHHHhccHHHHHHH
Q 004243 565 TYVIQLLEEALRCPSDGLRK-GQALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDE 639 (766)
Q Consensus 565 ~~~~~~~~~A~~~~~~~l~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~la~~~~~~g~~~~A~~~ 639 (766)
..-+.. ..+-.++ ..+...+|.+..+.|+.++|++.++..++.. ...++.++..++...+.+.++...
T Consensus 245 -----~~~e~~--~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 245 -----HFWEAW--HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred -----chhhhh--hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 000000 0011111 3456789999999999999999999999763 335889999999999999999998
Q ss_pred HHHHHHh-ccCCHHHHHHHhh-----hcC---------------HHHHHHHHHHHHhcCCCCch
Q 004243 640 MTKLLEK-AQYSASAFEKRSE-----YSD---------------REMAKNDLNMATQLDPLRTY 682 (766)
Q Consensus 640 ~~~~l~~-~p~~~~~~~~~~~-----~~~---------------~~~A~~~~~~al~~~p~~~~ 682 (766)
+.+.-+. .|+.+...+..+. .++ -..|.+.+.+|++.+|..+.
T Consensus 318 L~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 318 LAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 8886433 2555555444431 111 12355666667776665543
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.017 Score=55.51 Aligned_cols=158 Identities=14% Similarity=0.005 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHH-HHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhH
Q 004243 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC-LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 433 (766)
Q Consensus 355 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~ 433 (766)
-+..+.-....|++.+|...|..++...|.... ...++.++...|+.+.|...+.. .|.+.. .-...+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~------~~~~~~- 205 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQ------DKAAHG- 205 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----Ccccch------hhHHHH-
Confidence 444566677778888888888888887774443 33488888888888887766654 233331 000011
Q ss_pred HHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--ch
Q 004243 434 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--EH 511 (766)
Q Consensus 434 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~ 511 (766)
+...+.....| .+...+..+.+.+..+|++..+.+.+|..+...|+.++|.+.+-..+..+.. +.
T Consensus 206 l~a~i~ll~qa-------------a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~ 272 (304)
T COG3118 206 LQAQIELLEQA-------------AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272 (304)
T ss_pred HHHHHHHHHHH-------------hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence 11111111111 1222255668888999999999999999999999999999999888877543 34
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHH
Q 004243 512 ERLVYEGWILYDTGHREEALSRAEK 536 (766)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (766)
.+...+-.++...|.-+.+...+++
T Consensus 273 ~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 273 EARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5555666666666644444444443
No 269
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.25 E-value=0.0017 Score=53.55 Aligned_cols=82 Identities=20% Similarity=0.142 Sum_probs=60.4
Q ss_pred ceEEEE-cCeEEEeehHHHhcCCHHHHHHhcCCCccCC-CCeEEecCCCCCHHHHHHHHHHhhcCCCCC-----------
Q 004243 56 SVTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRVDL----------- 122 (766)
Q Consensus 56 dv~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~-~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~----------- 122 (766)
-|+++. +|..|.+.+.+. ..|..++.|+.+...+.. ...|.+ ++|+..+++.+++|++.-.-..
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl--~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~ 79 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPL--PNVTSKILSKVIEYCEHHVDDPPSVADKDDIPT 79 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccC--CCcCHHHHHHHHHHHHHcccCCCCccccccccH
Confidence 366665 889999999987 689999999976433322 258999 9999999999999997432110
Q ss_pred -------CCHHHHHHHHHHhhhhCh
Q 004243 123 -------FCPGIVLELLSFANRFCC 140 (766)
Q Consensus 123 -------~~~~~~~~~l~~a~~~~~ 140 (766)
++.+.+.+|+.+|+++++
T Consensus 80 wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 80 WDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445567777777777654
No 270
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.24 E-value=0.39 Score=51.07 Aligned_cols=174 Identities=11% Similarity=-0.116 Sum_probs=130.8
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-cCCHHHHHHHh----
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA-QYSASAFEKRS---- 658 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~---- 658 (766)
..|..-.......|+++...-.|++++-- .....|...+.-....|+.+-|...+..+.+.. |..+.....-+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 56667777778899999999999999876 567899999999999999998988888887765 44444433333
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHH---HHHHHHHhcCCCh---HHHH-HHHHHHH-HcCCH
Q 004243 659 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAV---EELSKAIAFKPDL---QMLH-LRAAFYE-SIGDL 730 (766)
Q Consensus 659 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~p~~---~~~~-~la~~~~-~~g~~ 730 (766)
..|++..|...+++...--|+...+-..........|+.+.+. ..+.....-..+. +.++ ..+.... -.++.
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence 4689999999999999777988888888888888899998888 4444333332222 2222 3344333 36899
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 004243 731 TSAIRDSQAALCLDPNHMETLDLYNRARD 759 (766)
Q Consensus 731 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 759 (766)
+.|...+.++++..|++...+..+.++..
T Consensus 458 ~~a~~~l~~~~~~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 458 DLARIILLEANDILPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence 99999999999999999888776666554
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.021 Score=55.37 Aligned_cols=151 Identities=15% Similarity=0.047 Sum_probs=115.7
Q ss_pred hHHHHHHhCCHHHHHHHHHHHHccCChH--HHHHHHHHHHHhccHHHHHHHHHHHHHh-ccCCHHHHHHHh-------hh
Q 004243 591 LGSIYVECGKLDQAENCYINALDIKHTR--AHQGLARVYYLKNELKAAYDEMTKLLEK-AQYSASAFEKRS-------EY 660 (766)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~-------~~ 660 (766)
-+.+....|+..+|...+++.++--|.+ ++..--.+++..|+...-...+++++.. +|+.+-.-+..| +.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3455667888889888899988875444 5555667788889988888888888866 555543322222 67
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHcCCHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-----QMLHLRAAFYESIGDLTSAIR 735 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~la~~~~~~g~~~~A~~ 735 (766)
|-+++|.+.-+++++++|.+..+...++.++...|+..++.+...+--..-... ..|+.-+.++...+.|+.|++
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 889999999999999999999999999999999999999999887754332222 123356889999999999999
Q ss_pred HHHHHH
Q 004243 736 DSQAAL 741 (766)
Q Consensus 736 ~~~~al 741 (766)
.|.+-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 997643
No 272
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0021 Score=62.11 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhccCCHH----HHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 004243 620 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS----AFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVL 691 (766)
Q Consensus 620 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 691 (766)
+-.-|+-|++.++|..|...|.+.+...-.+++ .|.+++ .+|++..|+....+++.++|.+..+++.-|.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 444577777778888888888888766544433 233333 234444444444444444444444444444444
Q ss_pred HhCCCHHHHHHHHHHHHhc
Q 004243 692 MDDQKEVEAVEELSKAIAF 710 (766)
Q Consensus 692 ~~~g~~~~A~~~~~~al~~ 710 (766)
+.+.++.+|..+++..+.+
T Consensus 164 ~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 4444444444444444333
No 273
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.15 E-value=0.0065 Score=50.58 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=73.3
Q ss_pred CchhHHHHHHHHHhCC---CHHHHHHHHHHHHh-cCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHH
Q 004243 680 RTYPYRYRAAVLMDDQ---KEVEAVEELSKAIA-FKPDL--QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDL 753 (766)
Q Consensus 680 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 753 (766)
.....+++++++.... +..+.+..++..++ -.|.. ..+|.++..+.+.++|+.|+.+.+..++.+|++.++..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3567788999988764 56778999999996 55655 677899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 004243 754 YNRARDQASHQ 764 (766)
Q Consensus 754 l~~~~~~~~~~ 764 (766)
-..++..++|+
T Consensus 111 k~~ied~itke 121 (149)
T KOG3364|consen 111 KETIEDKITKE 121 (149)
T ss_pred HHHHHHHHhhc
Confidence 99999888775
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.15 E-value=0.13 Score=53.77 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=109.0
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHccC------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccC-CHH----H
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY-SAS----A 653 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~----~ 653 (766)
...|...+.+....|+++.|...+.++.... .+.+....+.++...|+..+|+..++..+..... ... .
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 4778999999999999999999999999875 6788899999999999999999999998872221 110 0
Q ss_pred HHHHhhhcCH----HHHHHHHHHHHhcCCCCchhHHHHHHHHHhC------CCHHHHHHHHHHHHhcCCCh-HHHHHHHH
Q 004243 654 FEKRSEYSDR----EMAKNDLNMATQLDPLRTYPYRYRAAVLMDD------QKEVEAVEELSKAIAFKPDL-QMLHLRAA 722 (766)
Q Consensus 654 ~~~~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~-~~~~~la~ 722 (766)
....+..... ....... .....+.++..+|...... +..++++..|.++++.+|+. ..++..|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHhhccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0000000000 0000000 0011256677777777777 89999999999999999988 55666665
Q ss_pred HHHHcC-----------------CHHHHHHHHHHHHccCCC
Q 004243 723 FYESIG-----------------DLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 723 ~~~~~g-----------------~~~~A~~~~~~al~~~p~ 746 (766)
.+...= -...|+..|-+++...|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 301 FNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 554421 124689999999999988
No 275
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.15 E-value=0.00063 Score=66.09 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=69.7
Q ss_pred eEEEeehHHHhcCCHHHHHHhcCCCccCC-CCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhChHh
Q 004243 64 KEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFANRFCCEE 142 (766)
Q Consensus 64 ~~~~~h~~~l~~~s~~f~~~~~~~~~e~~-~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~~l~~a~~~~~~~ 142 (766)
+.|.|.+-+|-..-.||+..+.....++. .++|+|+ -..+..+|.=+++|+...... ++++||..+|.-|+++++++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 68999999999999999999976333322 2345552 267899999999999986555 77778888888888888888
Q ss_pred HHHHHHHHHHhhcC
Q 004243 143 MKSACDAHLASLVG 156 (766)
Q Consensus 143 l~~~c~~~l~~~~~ 156 (766)
|.+.|..|+.++++
T Consensus 92 Lve~cl~y~~~~~~ 105 (317)
T PF11822_consen 92 LVEECLQYCHDHMS 105 (317)
T ss_pred HHHHHHHHHHHhHH
Confidence 88877777765554
No 276
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.08 E-value=0.0013 Score=63.94 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=64.5
Q ss_pred hhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCc--HHHH
Q 004243 262 LGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR--EKIV 339 (766)
Q Consensus 262 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~ 339 (766)
-+.-.+..|+++.|+..|..+++++|..... |.+++.+ ++...+ .|+.
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l-----~~kr~sv-------------------------~lkl~kp~~air 169 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAIL-----YAKRASV-------------------------FLKLKKPNAAIR 169 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhh-----cccccce-------------------------eeeccCCchhhh
Confidence 3444566677888888888888877765433 3333332 222333 3778
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH
Q 004243 340 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD 386 (766)
Q Consensus 340 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~ 386 (766)
.+..+++++|+.+..|-.+|.+...+|+|++|..++..+.+++-+..
T Consensus 170 D~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 170 DCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEA 216 (377)
T ss_pred hhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHH
Confidence 88888888888888888888888888888888888888776665433
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.015 Score=52.25 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcc
Q 004243 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (766)
Q Consensus 355 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 419 (766)
-.++|.+...+|.+++|+..++....-.=.+....++|.++...|+-++|+..|++++...++..
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 45678888899999999988877652221233344589999999999999999999998875554
No 278
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.04 E-value=0.48 Score=48.44 Aligned_cols=52 Identities=13% Similarity=-0.063 Sum_probs=44.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 689 AVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (766)
..++.+|+|.++.-+-.=..++.|+..++..+|.++....+|++|..++...
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4567789999999888888889998888889999999999999999888654
No 279
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.03 E-value=0.87 Score=51.33 Aligned_cols=51 Identities=6% Similarity=-0.198 Sum_probs=35.6
Q ss_pred CchhHHHHHHHHHhCCCHHHHHHHHH--------HHHhcCCChHHHH----HHHHHHHHcCCH
Q 004243 680 RTYPYRYRAAVLMDDQKEVEAVEELS--------KAIAFKPDLQMLH----LRAAFYESIGDL 730 (766)
Q Consensus 680 ~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~~~~~----~la~~~~~~g~~ 730 (766)
.+..++..|..+...|+.+.|...|. .+....+..+.+. ++..++...+..
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~ 465 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSR 465 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhccc
Confidence 37778889999999999999999997 4444455554332 566666655543
No 280
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.03 E-value=0.62 Score=49.60 Aligned_cols=94 Identities=18% Similarity=0.031 Sum_probs=78.0
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCChHHHHH-HHHHHHHcCCHHHHHHH
Q 004243 659 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF-KPDLQMLHL-RAAFYESIGDLTSAIRD 736 (766)
Q Consensus 659 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~-la~~~~~~g~~~~A~~~ 736 (766)
..|+++...-.|++++---....+.|...+......|+.+-|-..+.++.++ .|+.+..+. -+.+-...|++..|...
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~ 388 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVI 388 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHH
Confidence 4688888999999988766677889999999888899999999999988887 566666664 47777778999999999
Q ss_pred HHHHHccCCCChhHHH
Q 004243 737 SQAALCLDPNHMETLD 752 (766)
Q Consensus 737 ~~~al~~~p~~~~~~~ 752 (766)
+++..+-.|+..++-.
T Consensus 389 lq~i~~e~pg~v~~~l 404 (577)
T KOG1258|consen 389 LQRIESEYPGLVEVVL 404 (577)
T ss_pred HHHHHhhCCchhhhHH
Confidence 9999998898766633
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.02 E-value=0.19 Score=55.62 Aligned_cols=171 Identities=15% Similarity=0.043 Sum_probs=112.7
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHc-----CCHHHHHHHHHHHHcc------CCCHHHHHHHHHHHHhh----h-h
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEE-----GQIRAAISEIDRIIVF------KLSVDCLELRAWLFIAA----D-D 400 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~------~~~~~~~~~~a~~~~~~----g-~ 400 (766)
|...++.+.+. .+..+...+|.+|..- .|.+.|+.+++.+... ...+...+.+|.+|.+. . +
T Consensus 231 a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 231 AFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred HHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcccc
Confidence 66677666554 4667777888887765 5788999999888651 11333455688888774 3 7
Q ss_pred HHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHh---hhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCCh
Q 004243 401 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR---SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS 477 (766)
Q Consensus 401 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~ 477 (766)
+..|+..|.++-+....+ +...+|.++..-. +..+| ...|..+.+. .+.
T Consensus 309 ~~~A~~~~~~aA~~g~~~--------a~~~lg~~~~~g~~~~d~~~A------------------~~yy~~Aa~~--G~~ 360 (552)
T KOG1550|consen 309 YEKALKLYTKAAELGNPD--------AQYLLGVLYETGTKERDYRRA------------------FEYYSLAAKA--GHI 360 (552)
T ss_pred HHHHHHHHHHHHhcCCch--------HHHHHHHHHHcCCccccHHHH------------------HHHHHHHHHc--CCh
Confidence 788999998887754433 4466777665533 12233 3344555543 467
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHC-CCHHHHHHHHHHHHc
Q 004243 478 FLRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-GHREEALSRAEKSIS 539 (766)
Q Consensus 478 ~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~ 539 (766)
.+.+.+|.+|.. ..+...|..++.++.+.. .+.+.+.++..+... +++..+...+....+
T Consensus 361 ~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 361 LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 788888888765 357889999999998886 455566666655443 777777666655444
No 282
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.00 E-value=0.46 Score=51.27 Aligned_cols=121 Identities=15% Similarity=0.046 Sum_probs=89.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHH
Q 004243 490 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQ 569 (766)
Q Consensus 490 ~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 569 (766)
....+.|.+.++...+..|+.+-.++..|.++...|+.++|++.|++++...... ..+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~---~Ql------------------- 303 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW---KQL------------------- 303 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH---HhH-------------------
Confidence 3456778888888888888888788888888888888888888888877432221 000
Q ss_pred HHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHhccH-------HHHHHH
Q 004243 570 LLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNEL-------KAAYDE 639 (766)
Q Consensus 570 ~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~la~~~~~~g~~-------~~A~~~ 639 (766)
+...++.+|.++..+++|++|..+|.+..+.+ +.-..+..|.++...|+. ++|.+.
T Consensus 304 --------------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l 369 (468)
T PF10300_consen 304 --------------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEEL 369 (468)
T ss_pred --------------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHH
Confidence 13457889999999999999999999998873 334567788888899988 666666
Q ss_pred HHHHHHh
Q 004243 640 MTKLLEK 646 (766)
Q Consensus 640 ~~~~l~~ 646 (766)
+.++-..
T Consensus 370 ~~~vp~l 376 (468)
T PF10300_consen 370 FRKVPKL 376 (468)
T ss_pred HHHHHHH
Confidence 6666443
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.99 E-value=0.001 Score=41.80 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhcCcc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHI 288 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 288 (766)
+.+++.+|.+|...|++++|+..|+++++++|.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999998874
No 284
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.32 Score=45.93 Aligned_cols=189 Identities=13% Similarity=0.028 Sum_probs=119.9
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH-HHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR-AAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLAL 414 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~-~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 414 (766)
-+..++++++-+|+|.+.|..+-.+....|++. .-++..+.++..+. +...+..+-++....+.++.-+.+....++.
T Consensus 97 El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 97 ELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999988 88888999987665 4455556888888889999999999999987
Q ss_pred cCCcccccccchhhhHHhHHH-HHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHh-cC-
Q 004243 415 ESNYMMFHGRVSGDHLVKLLN-HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR-LN- 491 (766)
Q Consensus 415 ~p~~~~~~~~~~a~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~-~g- 491 (766)
+-.+-. ++...-.+- ...|-.+++. + ...+....+.+...|++..+|..+.-++.. .|
T Consensus 177 Di~NNS------AWN~Ryfvi~~~~~~~~~~~----l---------e~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl 237 (318)
T KOG0530|consen 177 DIRNNS------AWNQRYFVITNTKGVISKAE----L---------ERELNYTKDKILLVPNNESAWNYLKGLLELDSGL 237 (318)
T ss_pred hhhccc------hhheeeEEEEeccCCccHHH----H---------HHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCC
Confidence 654432 111100000 0011111110 0 001455678889999999999998888775 44
Q ss_pred -CHHHHHHHHHHHH-hcCCCchhhHHHHHHHHH------HCCCHH---HHHHHHHHHH-ccccch
Q 004243 492 -CQKAAMRCLRLAR-NHSSSEHERLVYEGWILY------DTGHRE---EALSRAEKSI-SIERTF 544 (766)
Q Consensus 492 -~~~~A~~~~~~a~-~~~p~~~~~~~~lg~~~~------~~g~~~---~A~~~~~~al-~~~p~~ 544 (766)
.+.+-........ ......|..+-.+..+|. ..+.-+ +|.+.++..- +.+|-.
T Consensus 238 ~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR 302 (318)
T KOG0530|consen 238 SSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIR 302 (318)
T ss_pred cCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHH
Confidence 2334444444333 333344555555555552 223333 4555565544 555544
No 285
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=96.89 E-value=0.00054 Score=67.51 Aligned_cols=145 Identities=15% Similarity=0.132 Sum_probs=118.2
Q ss_pred CceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC-CCHHHHHHHHH
Q 004243 55 DSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELLS 133 (766)
Q Consensus 55 ~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~-~~~~~~~~~l~ 133 (766)
.|+++..+...+++|+.+|...|+.|..+....-.-+....+.+ .+++...+..+.+++|.+ ++. -.......++.
T Consensus 27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~ 103 (319)
T KOG1778|consen 27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKI--LGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLA 103 (319)
T ss_pred chhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhccee--ecccccccchhhhhhccc-hhhhHHHHHHHHHHh
Confidence 34555556778999999999999999888766633334457788 789999999999999988 441 12234566777
Q ss_pred HhhhhChHhHHHHHHHHHHh-hcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCcccccccccC
Q 004243 134 FANRFCCEEMKSACDAHLAS-LVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCS 203 (766)
Q Consensus 134 ~a~~~~~~~l~~~c~~~l~~-~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~l~~~ 203 (766)
+...+.++.++..|...+.. .++ ..|++.++..+..+..+.|..++...|...|.....++.+...-++
T Consensus 104 ~~~~~~v~~~~~d~~~~~~~~~~~-~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~ 173 (319)
T KOG1778|consen 104 LSHVYVVPQPKADCDPILECGLFD-KRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCP 173 (319)
T ss_pred hhhhhhccCccccCCccccchhhh-hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecC
Confidence 77899999999999999987 556 8999999999999999999999999999999999888887766444
No 286
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.85 E-value=0.0041 Score=62.12 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=71.2
Q ss_pred ceEEEEcCeEEEeehHHHhcCC--HHHHHHhcCCCccCCCC--eEEecCCCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 004243 56 SVTFCVRDKEISFVRNKIASLS--SPFKAMLYGGFVESKRK--TIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLEL 131 (766)
Q Consensus 56 dv~~~~~~~~~~~h~~~l~~~s--~~f~~~~~~~~~e~~~~--~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~~ 131 (766)
=|.|.|||+.|...+.-|+... .+|.++|++.|.-..-+ .|-| |=+|+.|..+|.|+-||+++ ++.-....+
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~-~~g~~~~~l 87 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLD-ASGVFPERL 87 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCC-CccCchhhh
Confidence 4679999999999999996655 78999999988755444 3666 67899999999999999999 554444444
Q ss_pred HH-HhhhhChHhHHH---HHHHH
Q 004243 132 LS-FANRFCCEEMKS---ACDAH 150 (766)
Q Consensus 132 l~-~a~~~~~~~l~~---~c~~~ 150 (766)
+. =|.+|++.+|.+ .|+..
T Consensus 88 lhdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 88 LHDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred hhhhhhhcCcHHHHHHhhcCccc
Confidence 44 899999999876 45443
No 287
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.85 E-value=0.14 Score=52.30 Aligned_cols=190 Identities=15% Similarity=0.099 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCchhhHHHHHHHHHH---CCCHHHHHHHHHHHHccc-cch-HHH
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNH----SSSEHERLVYEGWILYD---TGHREEALSRAEKSISIE-RTF-EAF 547 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~-p~~-~~~ 547 (766)
++....+-..|....+|+.-++..+..-.. .++.+.+.+.+|.++.+ .|+.++|+..+..++... +.+ +.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445566667788899999999888877666 44567778889999999 999999999999965544 333 666
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-ChHHHHHHHHH
Q 004243 548 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARV 626 (766)
Q Consensus 548 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~la~~ 626 (766)
...|.++.+.-.... +......++|+.+|.++.+++ +...-.|++.+
T Consensus 221 gL~GRIyKD~~~~s~--------------------------------~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtL 268 (374)
T PF13281_consen 221 GLLGRIYKDLFLESN--------------------------------FTDRESLDKAIEWYRKGFEIEPDYYSGINAATL 268 (374)
T ss_pred HHHHHHHHHHHHHcC--------------------------------ccchHHHHHHHHHHHHHHcCCccccchHHHHHH
Confidence 666666544321100 011223788999999998885 23345667777
Q ss_pred HHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHH
Q 004243 627 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 706 (766)
Q Consensus 627 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 706 (766)
+...|...+.....++.... .-...|..| ..-.-.+-..+-.++.+..-.|++++|+.++++
T Consensus 269 L~~~g~~~~~~~el~~i~~~------l~~llg~kg------------~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~ 330 (374)
T PF13281_consen 269 LMLAGHDFETSEELRKIGVK------LSSLLGRKG------------SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEK 330 (374)
T ss_pred HHHcCCcccchHHHHHHHHH------HHHHHHhhc------------cccccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777644333333332200 000011111 000112233344566677778999999999999
Q ss_pred HHhcCCChHH
Q 004243 707 AIAFKPDLQM 716 (766)
Q Consensus 707 al~~~p~~~~ 716 (766)
++...|..+.
T Consensus 331 ~~~l~~~~W~ 340 (374)
T PF13281_consen 331 AFKLKPPAWE 340 (374)
T ss_pred HhhcCCcchh
Confidence 9988766543
No 288
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.82 E-value=0.009 Score=43.62 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=44.8
Q ss_pred eEEEE-cCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhh
Q 004243 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTR 116 (766)
Q Consensus 57 v~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~y 116 (766)
|+|+. +|+.|.+.+.+. ..|..++.||.+...+.. .|.+ ++|+..+++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl--~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPL--PNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEE--TTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--cccc--CccCHHHHHHHHHHHH
Confidence 56665 899999999887 589999999976444333 7999 9999999999999986
No 289
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.81 E-value=0.26 Score=49.93 Aligned_cols=174 Identities=18% Similarity=0.036 Sum_probs=127.4
Q ss_pred HHHHHHhchhhccc--cchhHHhhHHHHHHh----CCHHHHHHHHHHHHccCChHHHHHHHHHHHH----hccHHHHHHH
Q 004243 570 LLEEALRCPSDGLR--KGQALNNLGSIYVEC----GKLDQAENCYINALDIKHTRAHQGLARVYYL----KNELKAAYDE 639 (766)
Q Consensus 570 ~~~~A~~~~~~~l~--~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~la~~~~~----~g~~~~A~~~ 639 (766)
.+..++..+..+-. .......++..|... .+..+|..+|+.+.+.+.+.+.+.+|..|.. ..+..+|..+
T Consensus 56 ~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~ 135 (292)
T COG0790 56 DYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKY 135 (292)
T ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHH
Confidence 44555555544433 235677777777653 4688899999988888888999999999887 4588999999
Q ss_pred HHHHHHhccCCH-HHHHHHh---hhc--------CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC----CCHHHHHHH
Q 004243 640 MTKLLEKAQYSA-SAFEKRS---EYS--------DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD----QKEVEAVEE 703 (766)
Q Consensus 640 ~~~~l~~~p~~~-~~~~~~~---~~~--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~ 703 (766)
|+++.+...... .+...++ ..| +...|...|.++-... ++.+...+|.+|..- .++.+|..+
T Consensus 136 ~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~w 213 (292)
T COG0790 136 YEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRW 213 (292)
T ss_pred HHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHH
Confidence 999987754442 2233333 122 2357888888887765 788899999888663 589999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHccCCCC
Q 004243 704 LSKAIAFKPDLQMLHLRAAFYESIG---------------DLTSAIRDSQAALCLDPNH 747 (766)
Q Consensus 704 ~~~al~~~p~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~~ 747 (766)
|.++-+... ....+.++ ++...| +...|...+.++-...+..
T Consensus 214 y~~Aa~~g~-~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 214 YKKAAEQGD-GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHCCC-HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 999998877 66666777 666555 8889999999988876654
No 290
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.79 E-value=0.026 Score=50.22 Aligned_cols=111 Identities=16% Similarity=0.047 Sum_probs=71.6
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHH
Q 004243 623 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 702 (766)
Q Consensus 623 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 702 (766)
.|......++.+.++..+.+++.+.....-.- .....-.......++.. ...+...++..+...|++++|+.
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~--~~~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPD--LDDEEWVEPERERLREL------YLDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGG--GTTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCC--CCccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHHHHHH
Confidence 35555667888999999999987653221100 00000011122222221 13456678888999999999999
Q ss_pred HHHHHHhcCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 703 ELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 703 ~~~~al~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
.+++++..+|-++. +..+..+|...|+..+|++.|++..
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999955 4488999999999999999998763
No 291
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.016 Score=51.18 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=72.1
Q ss_pred cCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCC-----------------C--
Q 004243 62 RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVD-----------------L-- 122 (766)
Q Consensus 62 ~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~-----------------~-- 122 (766)
+|+.|.+-+.+. ..|..+++++...--......|.| ++|+..+|..|++|.+--+-+ .
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl--~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPL--PNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCcccc--CccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 788888887766 668988888864322222257999 889999999999999863211 0
Q ss_pred -----CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcC
Q 004243 123 -----FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (766)
Q Consensus 123 -----~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~ 156 (766)
++.+++.++..+|+++.+++|...|++.+...+.
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 4456899999999999999999999999988874
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.73 E-value=0.0029 Score=39.72 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHHccccc
Q 004243 512 ERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (766)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (766)
.+++.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45667777777777777777777777776664
No 293
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.71 E-value=0.0019 Score=53.48 Aligned_cols=40 Identities=10% Similarity=0.231 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccccccc
Q 004243 161 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (766)
Q Consensus 161 ~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~l 200 (766)
|++++.+|..|++++|.+.|.+||..||.++..+++|.+|
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L 40 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLEL 40 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcC
Confidence 8999999999999999999999999999999999999987
No 294
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.70 E-value=0.051 Score=48.33 Aligned_cols=113 Identities=20% Similarity=0.032 Sum_probs=77.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHH
Q 004243 391 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 470 (766)
Q Consensus 391 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al 470 (766)
.|......|+.+.++..+++++.+.......... .-..+...... +..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-----~~~W~~~~r~~-------------------------l~~-- 59 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLD-----DEEWVEPERER-------------------------LRE-- 59 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-----TSTTHHHHHHH-------------------------HHH--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-----ccHHHHHHHHH-------------------------HHH--
Confidence 3455566788999999999999977666520000 00000011000 011
Q ss_pred HcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 471 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
....+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|++.|++..+
T Consensus 60 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 60 ----LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp ----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 12345667888899999999999999999999999999999999999999999999999998765
No 295
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.62 E-value=1.7 Score=48.68 Aligned_cols=270 Identities=13% Similarity=-0.029 Sum_probs=150.7
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHH----HHHhccHHHHHHHHhhhccC----CCchhHHHHH
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARA----KYKVGQQYSAYKLINSIISE----HKPTGWMYQE 327 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~----~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~ 327 (766)
...+..-...+...|...+|+..--.|- +|.. .+.+... ..+.+ ....+..+.+.+|. ..|.-.+..+
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~--d~~~-aa~lle~~~~~L~~~~-~lsll~~~~~~lP~~~l~~~P~Lvll~a 422 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG--DPEM-AADLLEQLEWQLFNGS-ELSLLLAWLKALPAELLASTPRLVLLQA 422 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC--CHHH-HHHHHHhhhhhhhccc-chHHHHHHHHhCCHHHHhhCchHHHHHH
Confidence 4455566667778888888887643321 2222 2222111 12222 22333333444442 2344444444
Q ss_pred HHHhccCcH--HHHHHHHHHhcCCC--C-------chHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH------HHHHH
Q 004243 328 RSLYNLGRE--KIVDLNYASELDPT--L-------SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV------DCLEL 390 (766)
Q Consensus 328 ~~~~~~~~~--A~~~~~~al~~~p~--~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~ 390 (766)
-......++ |.....++...-|. . +...-.+|.+....|+++.|.+..+.++..-|.. ..+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 444545553 44444444333222 1 2445567888899999999999999998776622 22344
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHH
Q 004243 391 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 470 (766)
Q Consensus 391 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al 470 (766)
.|.+..-.|++++|..+.+.+.+....+..++-.+-+....+.+...+|+...+.... .+ -....+-+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~-~~-----------~~~~~q~l 570 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEK-AF-----------NLIREQHL 570 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HH-----------HHHHHHHh
Confidence 8888888999999999998888865544432222234445555666666433332111 00 11223344
Q ss_pred HcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc--hh-hHHHHHHHHHHCCCHHHHHHHHHHHHccc
Q 004243 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH----SSSE--HE-RLVYEGWILYDTGHREEALSRAEKSISIE 541 (766)
Q Consensus 471 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~p~~--~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (766)
...|-+.-.....+.++...-+++.+.......+.. .|.. +. ..+.++.+....|++++|.....+...+-
T Consensus 571 ~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 571 EQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred hhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 445554444444555544444466666655554443 2222 22 22478999999999999999988876643
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.61 E-value=0.67 Score=49.84 Aligned_cols=233 Identities=15% Similarity=0.039 Sum_probs=127.3
Q ss_pred HHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhH----------HHHHHHHHHCCCHHHHHHHHHH
Q 004243 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL----------VYEGWILYDTGHREEALSRAEK 536 (766)
Q Consensus 467 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~----------~~lg~~~~~~g~~~~A~~~~~~ 536 (766)
.+-++.+| ++..|..+|......-.++-|...|-+.-.. |.- ... ...+.+-.--|++++|.+.|-.
T Consensus 683 ~qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 683 IQFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred HHHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence 45555565 6889999998888777777777776554322 111 111 2234444456889999988865
Q ss_pred HHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc------cchhHHhhHHHHHHhCCHHHHHHHHHH
Q 004243 537 SISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR------KGQALNNLGSIYVECGKLDQAENCYIN 610 (766)
Q Consensus 537 al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 610 (766)
+-+.+-.-+.+ ..+|+|-...++++..-. ...++.++|..+..+..|++|.++|..
T Consensus 760 ~drrDLAielr------------------~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 760 ADRRDLAIELR------------------KKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred cchhhhhHHHH------------------HhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43322110111 112244444444433211 147788899999999999999988876
Q ss_pred HHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHH
Q 004243 611 ALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRY 686 (766)
Q Consensus 611 al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~ 686 (766)
.-. ..++..+++...++++- +.....-|++...+-..+ ..|.-++|.+.|-+.- .| .+-
T Consensus 822 ~~~------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~p---kaA-- 884 (1189)
T KOG2041|consen 822 CGD------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LP---KAA-- 884 (1189)
T ss_pred ccc------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--Cc---HHH--
Confidence 533 23455666666666443 333344455544444444 3455566666654411 11 111
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 004243 687 RAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 687 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~a 740 (766)
-......++|.+|.+.-++- .-|.-..+. ..+.-+.+.++..+|++.++++
T Consensus 885 -v~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 885 -VHTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 11334455666666654432 123333333 2344445567788888887776
No 297
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.12 Score=49.96 Aligned_cols=125 Identities=18% Similarity=0.064 Sum_probs=89.7
Q ss_pred HHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh--HHHHHHHHhccHHHHHHHHhhhccCCCchhHHH-HH--HHHhcc
Q 004243 259 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLINSIISEHKPTGWMY-QE--RSLYNL 333 (766)
Q Consensus 259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~ 333 (766)
-+..|......|++.+|...|..+++..|.+..+ ++++++...|+...+-..+..+-.+.....+.. .+ ..+...
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999999988665 788899988886555443333322222233332 11 111111
Q ss_pred CcH-HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004243 334 GRE-KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 383 (766)
Q Consensus 334 ~~~-A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 383 (766)
..- -+..+.+.+..+|++..+-+.+|..+...|+.++|++.+-..++.+-
T Consensus 217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 111 45677788889999999999999999999999999999888876654
No 298
>PRK10941 hypothetical protein; Provisional
Probab=96.53 E-value=0.022 Score=55.69 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 004243 682 YPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 682 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 760 (766)
....++-.++.+.++++.|+.+.+..+.+.|+++. +.-+|.+|.++|.+..|...++..++..|+++++.....++...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34556777899999999999999999999999965 55899999999999999999999999999999998877777766
Q ss_pred hhh
Q 004243 761 ASH 763 (766)
Q Consensus 761 ~~~ 763 (766)
..+
T Consensus 262 ~~~ 264 (269)
T PRK10941 262 EQK 264 (269)
T ss_pred hhc
Confidence 544
No 299
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.51 E-value=0.18 Score=51.49 Aligned_cols=151 Identities=13% Similarity=0.002 Sum_probs=104.3
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCC------------HHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHH
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNC------------QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA 530 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 530 (766)
...+++.++.+|.+..+|..+....-..-. .+.-+.+|++|++.+|++...+..+-....+..+.++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 345789999999999999998876655432 45667889999999999999998888888899999999
Q ss_pred HHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc---------------chhHHhhHHH
Q 004243 531 LSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK---------------GQALNNLGSI 594 (766)
Q Consensus 531 ~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------------~~~~~~lg~~ 594 (766)
.+.+++++..+|++ ..|.......... ...-........+.+++..+...... ...+..+...
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~-~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSN-FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999999999988 5555433332221 22233444455566665555444221 1344455555
Q ss_pred HHHhCCHHHHHHHHHHHHcc
Q 004243 595 YVECGKLDQAENCYINALDI 614 (766)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~ 614 (766)
....|..+.|+..++..++.
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHCCchHHHHHHHHHHHHH
Confidence 56666666666666666665
No 300
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.50 E-value=0.0041 Score=39.61 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=24.4
Q ss_pred HHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 258 ALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
++..+|.+|...|+|++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999997765
No 301
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.86 Score=43.17 Aligned_cols=227 Identities=15% Similarity=0.072 Sum_probs=148.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCC-CHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCCh
Q 004243 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESS 564 (766)
Q Consensus 487 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~ 564 (766)
+.+...-..|+...+.++..+|.+-.+|...-.++..++ +..+-++++.+++.-+|.+ ..|...-..
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~i----------- 121 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVI----------- 121 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHH-----------
Confidence 344456677888888888888888888877776666543 5667788888888888887 555444333
Q ss_pred HHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHH-HHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHH
Q 004243 565 TYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLD-QAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMT 641 (766)
Q Consensus 565 ~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 641 (766)
....|++. .-++..+.++.. .+-.+|...-.+...-+.++.-+.+..
T Consensus 122 ------------------------------ve~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 122 ------------------------------VELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred ------------------------------HHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 33344444 445555666665 344678888888888888999999999
Q ss_pred HHHHhccCCHHHHHHHh----h-h-----cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh-CC--CHHHHHHHHHHHH
Q 004243 642 KLLEKAQYSASAFEKRS----E-Y-----SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD-DQ--KEVEAVEELSKAI 708 (766)
Q Consensus 642 ~~l~~~p~~~~~~~~~~----~-~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al 708 (766)
++++.+--+-.+|..+- . . ...+.-+.+..+.+.+.|++..+|..|.-++.. .| .+.+-.......+
T Consensus 172 ~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 172 ELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred HHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99988877777777665 1 1 123566777888899999999999999888875 44 2344444444444
Q ss_pred hcCC-ChHHHH-HHHHHH------HHcCCHH---HHHHHHHHHH-ccCCCChhHHHHH
Q 004243 709 AFKP-DLQMLH-LRAAFY------ESIGDLT---SAIRDSQAAL-CLDPNHMETLDLY 754 (766)
Q Consensus 709 ~~~p-~~~~~~-~la~~~------~~~g~~~---~A~~~~~~al-~~~p~~~~~~~~l 754 (766)
...| ..+.+. -+..+| .+.+.-+ +|.+.|+..- +.+|-....|...
T Consensus 252 ~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 252 LQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred hccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 2222 224333 233333 2233334 5777777655 7788766666554
No 302
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.42 E-value=0.61 Score=49.17 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=79.2
Q ss_pred HHHHHHH-HHhccHHHHHHHHHHHHHhccCCHHH-HHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 004243 621 QGLARVY-YLKNELKAAYDEMTKLLEKAQYSASA-FEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD 694 (766)
Q Consensus 621 ~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 694 (766)
.++|-+| ...|+...|..++..++...|....+ ..+++ ..+....|-..+.+++.+....|-.++.+|+.++..
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 3444444 45799999999999999888765442 33344 456678899999999999988889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHH
Q 004243 695 QKEVEAVEELSKAIAFKPDLQMLH 718 (766)
Q Consensus 695 g~~~~A~~~~~~al~~~p~~~~~~ 718 (766)
.+.+.|++.|++|++.+|+++...
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPECE 713 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhH
Confidence 999999999999999999986544
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.41 E-value=0.86 Score=45.54 Aligned_cols=162 Identities=10% Similarity=-0.055 Sum_probs=93.0
Q ss_pred HHcCCHHHHHHHHHHHHccCC--CHHH-------HHHHHHHHHhhh-hHHHHHHHHHHHHhcc----CCcc---cc-ccc
Q 004243 363 MEEGQIRAAISEIDRIIVFKL--SVDC-------LELRAWLFIAAD-DYESALRDTLALLALE----SNYM---MF-HGR 424 (766)
Q Consensus 363 ~~~g~~~~A~~~~~~al~~~~--~~~~-------~~~~a~~~~~~g-~~~~A~~~~~~al~~~----p~~~---~~-~~~ 424 (766)
..+|+++.|..++.++-...+ +|.. .|..|......+ ++++|...++++.++- +... .. .-+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467888888888888755441 2222 445677777788 9999999999988862 2111 11 112
Q ss_pred chhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004243 425 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 504 (766)
Q Consensus 425 ~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 504 (766)
..++..++..+...+..+.... ++...+.+-...|+.+..+...-.+..+.++.+++.+.+.+++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k---------------a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK---------------ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH---------------HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 3345555555544443332210 1223344445568878887666667777889999999999888
Q ss_pred hcCCCchhhHHH-HHHH-HHHCCCHHHHHHHHHHHHc
Q 004243 505 NHSSSEHERLVY-EGWI-LYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 505 ~~~p~~~~~~~~-lg~~-~~~~g~~~~A~~~~~~al~ 539 (766)
...+-....+.. +..+ .........|...+...+.
T Consensus 149 ~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 149 RSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 764411111111 1111 1122334566666666654
No 304
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.41 E-value=0.004 Score=60.73 Aligned_cols=115 Identities=11% Similarity=-0.021 Sum_probs=76.7
Q ss_pred ceEEEE-cCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 004243 56 SVTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSF 134 (766)
Q Consensus 56 dv~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~~l~~ 134 (766)
|++|.+ +|+.|-|||..|++||++|..-+..-+. ...+|+= ..+-+.+|..+++|+|-..-. +-.+.-..++.+
T Consensus 151 di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~--~~v~~~~f~~flk~lyl~~na-~~~~qynallsi 225 (516)
T KOG0511|consen 151 DIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEA--HRVILSAFSPFLKQLYLNTNA-EWKDQYNALLSI 225 (516)
T ss_pred chHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhh--hhhhHhhhhHHHHHHHHhhhh-hhhhHHHHHHhh
Confidence 999998 7888999999999999998654433221 3345644 577899999999999976222 344445789999
Q ss_pred hhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHH
Q 004243 135 ANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVL 184 (766)
Q Consensus 135 a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i 184 (766)
..+|+++.|...- + .+..-..-+....++|..+...-.+++
T Consensus 226 ~~kF~~e~l~~~~--------~-kdr~~~~sR~~k~~q~~~tq~~~~~~L 266 (516)
T KOG0511|consen 226 EVKFSKEKLSLEI--------S-KDRMEDLSRICKVCQCESTQKIIEKEL 266 (516)
T ss_pred hhhccHHHhHHHH--------h-hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999988776432 2 222222234445555555555444444
No 305
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.34 E-value=2.5 Score=47.44 Aligned_cols=122 Identities=16% Similarity=0.045 Sum_probs=88.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--c-------hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--E-------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEA 546 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 546 (766)
+|..-...+.......++.+|.....++...-|. . ....-..|.+....|++++|.+..+.++..-|....
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4566677788888899999999988876544332 1 334456688889999999999999999987666500
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CC--h--H
Q 004243 547 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KH--T--R 618 (766)
Q Consensus 547 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~--~--~ 618 (766)
+ ....+...+|.+..-.|++++|..+..++.+. +. - .
T Consensus 494 ~-----------------------------------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~ 538 (894)
T COG2909 494 R-----------------------------------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW 538 (894)
T ss_pred h-----------------------------------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 0 01345778889999999999999999988877 21 1 2
Q ss_pred HHHHHHHHHHHhcc
Q 004243 619 AHQGLARVYYLKNE 632 (766)
Q Consensus 619 ~~~~la~~~~~~g~ 632 (766)
+....+.++..+|+
T Consensus 539 ~~~~~s~il~~qGq 552 (894)
T COG2909 539 SLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHhhH
Confidence 34555777788884
No 306
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.26 E-value=5 Score=50.16 Aligned_cols=127 Identities=14% Similarity=0.089 Sum_probs=91.8
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCC-----------HHH
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS-----------ASA 653 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----------~~~ 653 (766)
++.|.+.|.+-...|+++.|..+.-+|.+...+.+....|..+...|+-..|+..+++.++.+-.+ ...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhh
Confidence 578999999999999999999999999998888999999999999999999999999998654222 111
Q ss_pred ------HHHHh----hhcCH--HHHHHHHHHHHhcCCCCchhHHHHHHHHH------------hCCCHHH---HHHHHHH
Q 004243 654 ------FEKRS----EYSDR--EMAKNDLNMATQLDPLRTYPYRYRAAVLM------------DDQKEVE---AVEELSK 706 (766)
Q Consensus 654 ------~~~~~----~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~------------~~g~~~~---A~~~~~~ 706 (766)
....+ ..+++ +.-+..|..+.+..|.....++.+|..|. +.|++.. |+..|.+
T Consensus 1750 ~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~ 1829 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGR 1829 (2382)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHH
Confidence 11111 22332 56678888899999977777777774432 2345544 5556666
Q ss_pred HHhcC
Q 004243 707 AIAFK 711 (766)
Q Consensus 707 al~~~ 711 (766)
++...
T Consensus 1830 sl~yg 1834 (2382)
T KOG0890|consen 1830 ALYYG 1834 (2382)
T ss_pred HHHhc
Confidence 66553
No 307
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.24 E-value=0.8 Score=46.31 Aligned_cols=175 Identities=18% Similarity=0.056 Sum_probs=106.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHC----CCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCCh
Q 004243 489 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT----GHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 564 (766)
Q Consensus 489 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 564 (766)
..+++..|...+..+-.. .++.....++.+|... .+..+|..+|+.+... .+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--g~-------------------- 108 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--GL-------------------- 108 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--cc--------------------
Confidence 446667777777666552 2235566666666542 3456666666644331 11
Q ss_pred HHHHHHHHHHHhchhhccccchhHHhhHHHHHH----hCCHHHHHHHHHHHHccCChHH---HHHHHHHHHHhc------
Q 004243 565 TYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKHTRA---HQGLARVYYLKN------ 631 (766)
Q Consensus 565 ~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~---~~~la~~~~~~g------ 631 (766)
+.+.+.+|.+|.. ..++.+|..+|+++...+++.+ .+.+|..|..-.
T Consensus 109 --------------------~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 109 --------------------AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred --------------------HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 2345555655555 3377788888888887766666 777777766542
Q ss_pred -cHHHHHHHHHHHHHhccCCHHHHHHHh--------hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC-------
Q 004243 632 -ELKAAYDEMTKLLEKAQYSASAFEKRS--------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ------- 695 (766)
Q Consensus 632 -~~~~A~~~~~~~l~~~p~~~~~~~~~~--------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------- 695 (766)
+...|...|.++.... +..+...+| .-.+.++|..+|.++.+... ....+.++ ++...|
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~ 243 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAA 243 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhh
Confidence 2235777777766554 444444444 22467888888888887766 77788888 555555
Q ss_pred --------CHHHHHHHHHHHHhcCC
Q 004243 696 --------KEVEAVEELSKAIAFKP 712 (766)
Q Consensus 696 --------~~~~A~~~~~~al~~~p 712 (766)
+...|...+.++....+
T Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 244 FLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCC
Confidence 66667777766655543
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.19 E-value=1.4 Score=44.04 Aligned_cols=227 Identities=13% Similarity=0.034 Sum_probs=124.4
Q ss_pred HhcCCHHHHHHHHHHHHhcC----CCc----hhhHHHHHHHHHHCC-CHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Q 004243 488 LRLNCQKAAMRCLRLARNHS----SSE----HERLVYEGWILYDTG-HREEALSRAEKSISIERTFEAFFLKAYILADTN 558 (766)
Q Consensus 488 ~~~g~~~~A~~~~~~a~~~~----p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~ 558 (766)
.+.|+.+.|...+.++-... |+. ...+++.|......+ ++++|+.+++++.++-... ....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~----------~~~~ 73 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP----------GKMD 73 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh----------hhcc
Confidence 46799999999999876543 333 456788899999999 9999999999998762110 0000
Q ss_pred CCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHH---HHHHHHcc--CChHHHHHHHHHHHHhccH
Q 004243 559 LDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAEN---CYINALDI--KHTRAHQGLARVYYLKNEL 633 (766)
Q Consensus 559 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~---~~~~al~~--~~~~~~~~la~~~~~~g~~ 633 (766)
........ + ...++..++.+|...+.++...+ ..+.+... +++..+...-.+....++.
T Consensus 74 ~~~~~~~e--------l--------r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~ 137 (278)
T PF08631_consen 74 KLSPDGSE--------L--------RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE 137 (278)
T ss_pred ccCCcHHH--------H--------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh
Confidence 00000000 0 13456778888888777654333 33333222 3444553334444447788
Q ss_pred HHHHHHHHHHHHhcc-C--CHHH-HHHHh--hhcCHHHHHHHHHHHHh--cCCCCchhHHHHHH---HHHhCC--C----
Q 004243 634 KAAYDEMTKLLEKAQ-Y--SASA-FEKRS--EYSDREMAKNDLNMATQ--LDPLRTYPYRYRAA---VLMDDQ--K---- 696 (766)
Q Consensus 634 ~~A~~~~~~~l~~~p-~--~~~~-~~~~~--~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~---~~~~~g--~---- 696 (766)
+++.+.+.+++...+ . +... ..... .......+...+...+. ..|.... +..... ++...+ +
T Consensus 138 ~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~ 216 (278)
T PF08631_consen 138 EEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSS 216 (278)
T ss_pred hHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccch
Confidence 888888888886543 1 1111 11111 11233556666666553 3333221 332222 222222 2
Q ss_pred --HHHHHHHHHHHHhc--CCCh-H-------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 697 --EVEAVEELSKAIAF--KPDL-Q-------MLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 697 --~~~A~~~~~~al~~--~p~~-~-------~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
.+.....+..+.+. .|-. . .+++.|.-.++.++|++|..+|+-++
T Consensus 217 ~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 217 EKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222333322111 1211 1 23367999999999999999999776
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.14 E-value=2.1 Score=44.62 Aligned_cols=147 Identities=15% Similarity=0.063 Sum_probs=92.5
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch--H-
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS----SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--E- 545 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~- 545 (766)
.......|...+.+..+.|.++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..+...... .
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 456678899999999999999999999999888652 247788889999999999999999999888722221 0
Q ss_pred -HHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHh------CCHHHHHHHHHHHHccCC--
Q 004243 546 -AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC------GKLDQAENCYINALDIKH-- 616 (766)
Q Consensus 546 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~-- 616 (766)
........+.. ....... .......... .+.++..+|...... +..+++...|..+++..+
T Consensus 222 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~--------~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 222 ISNAELKSGLLE-SLEVISS-TNLDKESKEL--------KAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred ccHHHHhhcccc-ccccccc-cchhhhhHHH--------HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 00000000000 0000000 0000000000 145677777777776 788888888888888743
Q ss_pred hHHHHHHHHHHHH
Q 004243 617 TRAHQGLARVYYL 629 (766)
Q Consensus 617 ~~~~~~la~~~~~ 629 (766)
..+|..+|..+..
T Consensus 292 ~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 292 EKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 3466666665443
No 310
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.13 E-value=0.022 Score=51.43 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=75.1
Q ss_pred CceEEEEcCeEEEeehHHHhcCCH--HHHHHhcCC---CccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 004243 55 DSVTFCVRDKEISFVRNKIASLSS--PFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 129 (766)
Q Consensus 55 ~dv~~~~~~~~~~~h~~~l~~~s~--~f~~~~~~~---~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~ 129 (766)
+=|.+.++|+.|-.-+--|..|-| -..+||++. -.|+.++.+-| |-+|.-|+-+|.|+-.|.+...+.-++.
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCL 85 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHH
Confidence 367888999999877666655543 568899864 34556667777 7789999999999999999877777899
Q ss_pred HHHHHhhhhChHhHHHHHHH
Q 004243 130 ELLSFANRFCCEEMKSACDA 149 (766)
Q Consensus 130 ~~l~~a~~~~~~~l~~~c~~ 149 (766)
++|+.|++|++-+|++.-+.
T Consensus 86 gvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 86 GVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHhhHHhhHhHHhHHhh
Confidence 99999999999999988777
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.12 E-value=0.009 Score=37.06 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 717 LHLRAAFYESIGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 717 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 746 (766)
++.+|.++...|++++|++.|+++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445566666666666666666666666655
No 312
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=6.1 Score=49.47 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=73.4
Q ss_pred CHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCC----------h
Q 004243 650 SASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF-KPD----------L 714 (766)
Q Consensus 650 ~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----------~ 714 (766)
.+..|.+.+ ..|.++.|...+-+|.+.. -+.++...|..+...|+-..|+..+++.++. .|+ .
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 355677766 3578888888888777665 5789999999999999999999999999865 233 1
Q ss_pred --HH-----HHHHHHHHHHcCCH--HHHHHHHHHHHccCCCChhHHHHHH
Q 004243 715 --QM-----LHLRAAFYESIGDL--TSAIRDSQAALCLDPNHMETLDLYN 755 (766)
Q Consensus 715 --~~-----~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~ 755 (766)
.. ....+......|++ ++-++.|..+.++.|...+.+..++
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 11 11234444556664 4557889999999997665544444
No 313
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.08 E-value=0.015 Score=36.01 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCC
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 650 (766)
++++.+|.++...|++++|.+.|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 467888999999999999999999999888864
No 314
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.90 E-value=0.011 Score=37.59 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 004243 684 YRYRAAVLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 684 ~~~la~~~~~~g~~~~A~~~~~~al 708 (766)
+.++|.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555533
No 315
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.90 E-value=0.51 Score=48.77 Aligned_cols=149 Identities=12% Similarity=-0.005 Sum_probs=101.9
Q ss_pred HHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------------CC------------Cc---hhhHHHH
Q 004243 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------------SS------------SE---HERLVYE 517 (766)
Q Consensus 467 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------------~p------------~~---~~~~~~l 517 (766)
-..++.+|-+.+.+..++.++..+|+.+.|.+.+++|+-. ++ .| -.+.+..
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 4567888999999999999999999999999998887521 11 11 1244566
Q ss_pred HHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHH
Q 004243 518 GWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE 597 (766)
Q Consensus 518 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~ 597 (766)
...+.+.|-+..|.++.+-.+.++|..+ |-.+...+-....+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~D--------------------------------------P~g~ll~ID~~ALr 151 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDED--------------------------------------PLGVLLFIDYYALR 151 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCC--------------------------------------cchhHHHHHHHHHh
Confidence 7788899999999999999999999841 01112222222333
Q ss_pred hCCHHHHHHHHHHHHcc-------CChHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHhccCCHHH
Q 004243 598 CGKLDQAENCYINALDI-------KHTRAHQGLARVYYLKNEL---------------KAAYDEMTKLLEKAQYSASA 653 (766)
Q Consensus 598 ~g~~~~A~~~~~~al~~-------~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~~l~~~p~~~~~ 653 (766)
.++++--++.++..... .-|..-+..+.++...++. ++|...+.+++...|.-...
T Consensus 152 s~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~ 229 (360)
T PF04910_consen 152 SRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVP 229 (360)
T ss_pred cCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHH
Confidence 44444444444443331 1345667778888888887 88899999998887754443
No 316
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.84 E-value=0.0088 Score=49.24 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccccccc
Q 004243 161 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (766)
Q Consensus 161 ~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~l 200 (766)
|+.++.+|..|+++.|.+.|.+||.+||..+.++++|..|
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L 40 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLEL 40 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcC
Confidence 6789999999999999999999999999999999999877
No 317
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.77 E-value=0.064 Score=43.53 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 004243 665 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 710 (766)
Q Consensus 665 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 710 (766)
.++++|.++..+.|..+..++.+|.-+-....|+++..-.++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3455555666666655555555555555555555555555555544
No 318
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.2 Score=44.02 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=24.4
Q ss_pred CCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004243 678 PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAF 723 (766)
Q Consensus 678 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~ 723 (766)
|-...+.-.||..-.+.|++.+|.+.|.+...-...+....+++.+
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~ 209 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQI 209 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHH
Confidence 3334455556666666666666666666665532222333344433
No 319
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.58 E-value=3.3 Score=42.54 Aligned_cols=380 Identities=12% Similarity=-0.022 Sum_probs=195.5
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCc
Q 004243 340 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (766)
Q Consensus 340 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 418 (766)
-+..-|+-+|++...|+.+..-+..+|.+++-.+.+++...-.| -+..|...-.--+..+++......|-+++...-+-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45667888999999999999999999999999999999986666 22223222222233467777777777777633221
Q ss_pred ccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHH---HcCCCChhHHHHHHHHHHh------
Q 004243 419 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML---INDPGKSFLRFRQSLLLLR------ 489 (766)
Q Consensus 419 ~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al---~~~p~~~~~~~~la~~~~~------ 489 (766)
. .|.+.-..-......-.+.....+ .+.|+-.+ -.+|.....|...+..+..
T Consensus 110 d-------LW~lYl~YIRr~n~~~tGq~r~~i------------~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k 170 (660)
T COG5107 110 D-------LWMLYLEYIRRVNNLITGQKRFKI------------YEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK 170 (660)
T ss_pred h-------HHHHHHHHHHhhCcccccchhhhh------------HHHHHHHHhcccccccccchHHHHHHHHHhcccccc
Confidence 1 111111111111110000000000 22233333 3467777777777765543
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCch-hhHHHH---------HHHHHHCC----CHHHHHHHHHHHHccc-------cch-
Q 004243 490 ---LNCQKAAMRCLRLARNHSSSEH-ERLVYE---------GWILYDTG----HREEALSRAEKSISIE-------RTF- 544 (766)
Q Consensus 490 ---~g~~~~A~~~~~~a~~~~p~~~-~~~~~l---------g~~~~~~g----~~~~A~~~~~~al~~~-------p~~- 544 (766)
+.+.+.-...|.+++..--++. ..|... +.+-.-.| -|-.|...|++...+- |-+
T Consensus 171 wEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~ 250 (660)
T COG5107 171 WEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINL 250 (660)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhh
Confidence 3334455666778877632322 122111 11111112 2445555555544321 111
Q ss_pred -----------HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc----cchhHHhhHHHHHHhCCHHHHHHHHH
Q 004243 545 -----------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYI 609 (766)
Q Consensus 545 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~~~~~~lg~~~~~~g~~~~A~~~~~ 609 (766)
..|.+....-...++..+.... .+..--.+++++. .++.|+.-..-....++-+.|+...+
T Consensus 251 Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~----~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~ 326 (660)
T COG5107 251 RTANKAARTSDSNWLNWIKWEMENGLKLGGRPH----EQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVE 326 (660)
T ss_pred hhhccccccccchhhhHhhHhhcCCcccCCCcH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 1223332222222222221110 0111111222222 24666666666667778888888877
Q ss_pred HHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------------ccCCH----HHHHHHh------------
Q 004243 610 NALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEK---------------AQYSA----SAFEKRS------------ 658 (766)
Q Consensus 610 ~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------------~p~~~----~~~~~~~------------ 658 (766)
+++...|. ....++..|...++.++-..+|+++.+. ..+++ +....+.
T Consensus 327 rg~~~sps-L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N 405 (660)
T COG5107 327 RGIEMSPS-LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLN 405 (660)
T ss_pred hcccCCCc-hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHH
Confidence 77766443 5556666666666655555555554321 00011 1111111
Q ss_pred ---hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHH
Q 004243 659 ---EYSDREMAKNDLNMATQLDPLRTYPYRYRAAV-LMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSA 733 (766)
Q Consensus 659 ---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A 733 (766)
...-.+.|...|-++-+..-....++..-|.+ +...|++.-|...|+-.+...|+.+.+. ..-..+...|+-..|
T Consensus 406 ~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~na 485 (660)
T COG5107 406 YVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENA 485 (660)
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHH
Confidence 11223556666666554432333444433333 3456888888888888888888887766 334555667888888
Q ss_pred HHHHHHHHcc
Q 004243 734 IRDSQAALCL 743 (766)
Q Consensus 734 ~~~~~~al~~ 743 (766)
...|+++++.
T Consensus 486 raLFetsv~r 495 (660)
T COG5107 486 RALFETSVER 495 (660)
T ss_pred HHHHHHhHHH
Confidence 8888766543
No 320
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.45 E-value=0.042 Score=52.59 Aligned_cols=55 Identities=20% Similarity=0.058 Sum_probs=34.6
Q ss_pred hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 660 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
.|+.++|...|+.|+.++|++++++..+|......++.-+|-.+|-+|+.++|.+
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 3556666666666666666666666666666665666666666666666666655
No 321
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.39 E-value=0.18 Score=40.08 Aligned_cols=74 Identities=15% Similarity=0.038 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHCCCHHHHHHHHHH
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHREEALSRAEK 536 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (766)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+.-...|++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 556788888889998999999999999999999999888888887765 44445555555555554444444433
No 322
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.38 E-value=0.66 Score=47.96 Aligned_cols=76 Identities=16% Similarity=0.056 Sum_probs=59.4
Q ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHc---------c-----CCC------------HHH----HHHHHH
Q 004243 344 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV---------F-----KLS------------VDC----LELRAW 393 (766)
Q Consensus 344 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---------~-----~~~------------~~~----~~~~a~ 393 (766)
.+..+|-+..++..++.++..+|+...|.+.+++++- . ++. +.. ++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 4577899999999999999999999999998888751 1 110 001 222566
Q ss_pred HHHhhhhHHHHHHHHHHHHhccCC-cc
Q 004243 394 LFIAADDYESALRDTLALLALESN-YM 419 (766)
Q Consensus 394 ~~~~~g~~~~A~~~~~~al~~~p~-~~ 419 (766)
...+.|-+..|++..+-.+.++|. |+
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 667889999999999999999999 66
No 323
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.32 E-value=0.79 Score=40.37 Aligned_cols=80 Identities=21% Similarity=0.132 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhc
Q 004243 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 557 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~ 557 (766)
.+.....+-...++.+++...+....-+.|..++.-..-|+++...|++.+|+..++.+....|.. ..--.++.++...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 445556666777899999999998888999999999999999999999999999999988777766 4444455555444
Q ss_pred C
Q 004243 558 N 558 (766)
Q Consensus 558 ~ 558 (766)
+
T Consensus 92 ~ 92 (160)
T PF09613_consen 92 G 92 (160)
T ss_pred C
Confidence 4
No 324
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.29 E-value=0.32 Score=46.04 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=67.5
Q ss_pred hcCCHHHHHHHHHHHHhc----C-C--CchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCC
Q 004243 489 RLNCQKAAMRCLRLARNH----S-S--SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDP 561 (766)
Q Consensus 489 ~~g~~~~A~~~~~~a~~~----~-p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~ 561 (766)
....+++|++.|..|+-. . + .-+..+..+|++|...|+.+.....+++|+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~---------------------- 146 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE---------------------- 146 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH----------------------
Confidence 345677888877765421 1 1 1256778889999999998877777777775
Q ss_pred CChHHHHHHHHHHHhchhhcc---ccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 562 ESSTYVIQLLEEALRCPSDGL---RKGQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 562 ~~~~~~~~~~~~A~~~~~~~l---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
.+.+|.+.-.... ......+.+|.+..+.|++++|..+|.+++..
T Consensus 147 --------~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 147 --------FYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred --------HHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3344443332211 12467788999999999999999999999987
No 325
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.23 E-value=0.19 Score=39.96 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV 385 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~ 385 (766)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 5678889999999999999999999999999999999999999988843
No 326
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.22 E-value=0.085 Score=36.74 Aligned_cols=34 Identities=32% Similarity=0.311 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccc
Q 004243 387 CLELRAWLFIAADDYESALRDTLALLALESNYMM 420 (766)
Q Consensus 387 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 420 (766)
.++.+|..++++|+|++|....+.+++.+|++..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566788888888888888888888888888884
No 327
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.18 E-value=0.4 Score=45.34 Aligned_cols=68 Identities=18% Similarity=0.042 Sum_probs=51.0
Q ss_pred chhHHHHHHHHHhCCCHHH-------HHHHHHHHHhcC--CCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 681 TYPYRYRAAVLMDDQKEVE-------AVEELSKAIAFK--PDL-----QMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 681 ~~~~~~la~~~~~~g~~~~-------A~~~~~~al~~~--p~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 746 (766)
+..+..+|++|...|+.+. |.+.|.++++.. |.. ...+++|.+..+.|++++|.++|.+++...-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 6778899999999999554 555555555443 221 34568899999999999999999999987544
Q ss_pred Ch
Q 004243 747 HM 748 (766)
Q Consensus 747 ~~ 748 (766)
+.
T Consensus 198 s~ 199 (214)
T PF09986_consen 198 SK 199 (214)
T ss_pred CC
Confidence 43
No 328
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.96 E-value=6.8 Score=42.61 Aligned_cols=196 Identities=11% Similarity=-0.091 Sum_probs=106.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHH
Q 004243 357 YRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNH 436 (766)
Q Consensus 357 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~ 436 (766)
.+|.+-.--|++++|.+.|-.+-+.+ +-..++.++|++-...+.++..- .+....+.-.++..+|....
T Consensus 739 q~aei~~~~g~feeaek~yld~drrD-------LAielr~klgDwfrV~qL~r~g~----~d~dD~~~e~A~r~ig~~fa 807 (1189)
T KOG2041|consen 739 QRAEISAFYGEFEEAEKLYLDADRRD-------LAIELRKKLGDWFRVYQLIRNGG----SDDDDEGKEDAFRNIGETFA 807 (1189)
T ss_pred HhHhHhhhhcchhHhhhhhhccchhh-------hhHHHHHhhhhHHHHHHHHHccC----CCcchHHHHHHHHHHHHHHH
Confidence 44555556688888888776553222 23455667788777666655322 12212222357777888877
Q ss_pred HHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHH
Q 004243 437 HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 516 (766)
Q Consensus 437 ~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 516 (766)
....|+.|.++. .. . ...-+...+++....|++-. .....-|++...+-.
T Consensus 808 ~~~~We~A~~yY---~~---------------~--------~~~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~ 857 (1189)
T KOG2041|consen 808 EMMEWEEAAKYY---SY---------------C--------GDTENQIECLYRLELFGELE----VLARTLPEDSELLPV 857 (1189)
T ss_pred HHHHHHHHHHHH---Hh---------------c--------cchHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHH
Confidence 777888776333 11 0 01123445555555554432 223334777777777
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc--chhHHhhHHH
Q 004243 517 EGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK--GQALNNLGSI 594 (766)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~lg~~ 594 (766)
+|.++...|.-++|++.|-+.- .|.- ...... .+.+|.+|++..++..-| .......+.-
T Consensus 858 ~a~mf~svGMC~qAV~a~Lr~s--~pka-----Av~tCv-----------~LnQW~~avelaq~~~l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 858 MADMFTSVGMCDQAVEAYLRRS--LPKA-----AVHTCV-----------ELNQWGEAVELAQRFQLPQVQTLIAKQAAQ 919 (1189)
T ss_pred HHHHHHhhchHHHHHHHHHhcc--CcHH-----HHHHHH-----------HHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 8888888888888877765422 1211 000011 123667777666555333 1223333444
Q ss_pred HHHhCCHHHHHHHHHHH
Q 004243 595 YVECGKLDQAENCYINA 611 (766)
Q Consensus 595 ~~~~g~~~~A~~~~~~a 611 (766)
++..++.-+|++.++++
T Consensus 920 ll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHhhcchHHHHHHhhhc
Confidence 55666777777776665
No 329
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.91 E-value=0.043 Score=33.34 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=13.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 719 LRAAFYESIGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 719 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 746 (766)
.+|.++...|++++|+..|+++++++|+
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4445555555555555555555544443
No 330
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.81 E-value=0.29 Score=40.02 Aligned_cols=104 Identities=16% Similarity=0.086 Sum_probs=67.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHH
Q 004243 391 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 470 (766)
Q Consensus 391 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al 470 (766)
.|.-.+.-|-|++|...++++++....-+.- .-++.
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~e-----------------EaFDh--------------------------- 50 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAE-----------------EAFDH--------------------------- 50 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TT-----------------S---H---------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChH-----------------hhccc---------------------------
Confidence 3455566788999999999999866555520 00010
Q ss_pred HcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCchh----hHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN-------HSSSEHE----RLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 471 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-------~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
+.-+.-.+..++..+..+|+|++++..-++++. ++.+... +.+..+..+..+|+.++|+..|+.+-+
T Consensus 51 --~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 51 --DGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 011233456777888889999888877766653 4444433 446778899999999999999998875
Q ss_pred c
Q 004243 540 I 540 (766)
Q Consensus 540 ~ 540 (766)
.
T Consensus 129 M 129 (144)
T PF12968_consen 129 M 129 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 331
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.79 E-value=1.6 Score=41.48 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------chhhHHHHHHHHHHCCCHHHHHHHHHHHHccc
Q 004243 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSS------------EHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (766)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (766)
..+|.+|+..++|.+-.+.+++.-+.... -.+++..-..+|..+.+-..-...|++++.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 36788888888887777776654332111 12334444566666777676677777777654
No 332
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=5.1 Score=42.41 Aligned_cols=83 Identities=18% Similarity=0.041 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYESALRDTLALLA 413 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 413 (766)
..+.+.+.....|+++.-.+..|..+...|+.+.|+..++..+...- ....++-+|+++..+.+|..|...+....+
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~d 331 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRD 331 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 55566666778899999999999999999998889999988876111 223355599999999999999999988877
Q ss_pred ccCCcc
Q 004243 414 LESNYM 419 (766)
Q Consensus 414 ~~p~~~ 419 (766)
...-..
T Consensus 332 esdWS~ 337 (546)
T KOG3783|consen 332 ESDWSH 337 (546)
T ss_pred hhhhhH
Confidence 654433
No 333
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.69 E-value=1.3 Score=38.31 Aligned_cols=106 Identities=17% Similarity=0.092 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCC
Q 004243 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNL 559 (766)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~ 559 (766)
......-...++.+++...+...--+.|+.++.-..-|+++...|+|.+|+..++....-.+.. -..-.++.++.-.+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~- 92 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG- 92 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC-
Confidence 3334444558899999999998888999999999999999999999999999999988876665 44445555555554
Q ss_pred CCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHH
Q 004243 560 DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINAL 612 (766)
Q Consensus 560 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 612 (766)
...|...+......+...+|+...+...
T Consensus 93 -------------------------Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 93 -------------------------DAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred -------------------------ChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 4556666666666666666666555444
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.62 E-value=0.052 Score=32.95 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHccccc
Q 004243 513 RLVYEGWILYDTGHREEALSRAEKSISIERT 543 (766)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (766)
++..+|.++...|++++|+..++++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555566666666666666666666655543
No 335
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.60 E-value=1 Score=36.99 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHH-------hcCCChH-H----HHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 681 TYPYRYRAAVLMDDQKEVEAVEELSKAI-------AFKPDLQ-M----LHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 681 ~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~-~----~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
+..+-.|+..+..+|+|++++..-.+++ +++.+.. . .+.+|..+..+|+.++|+..|+.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5566778888999999988777666665 4566652 2 237899999999999999999988764
No 336
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.60 E-value=0.12 Score=49.71 Aligned_cols=71 Identities=17% Similarity=0.009 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHH
Q 004243 482 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 552 (766)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~ 552 (766)
..|.-..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+++.++|.+ ++..+...
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 444555678999999999999999999999999999999999999999999999999999999 77665543
No 337
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.40 E-value=1.4 Score=38.92 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=72.1
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQA 739 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~ 739 (766)
++.+++...+...--+.|..+..-..-|++++..|+|.+|+..++.+.+..|..+... +++.|+..+||.+= ..+-..
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~e 102 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW-RRYADE 102 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 4556666677766678899999999999999999999999999999888888777665 67899988888653 222345
Q ss_pred HHccCCCChhHHHHHHHHHHh
Q 004243 740 ALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 740 al~~~p~~~~~~~~l~~~~~~ 760 (766)
+++..| ++++..+...+...
T Consensus 103 vle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 103 VLESGA-DPDARALVRALLAR 122 (160)
T ss_pred HHhcCC-ChHHHHHHHHHHHh
Confidence 555555 46666665555443
No 338
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.38 E-value=0.076 Score=48.82 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=31.2
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
++.+.|.+.|.+++.+.|.....|+.+|....+.|+.+.|...|++.++++|.+
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 455555555555555555555555555555555555555555555555555554
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.27 E-value=0.081 Score=34.83 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=26.5
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
+.++.++|.+|...|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999986
No 340
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.61 Score=38.24 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=70.7
Q ss_pred CceEEEE-cCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhc--CCCCC---------
Q 004243 55 DSVTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRT--SRVDL--------- 122 (766)
Q Consensus 55 ~dv~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt--~~~~~--------- 122 (766)
|-|.++. +|+.|.+.+.+ |-+|-..+.|+...- +. .-.|.. ++|...+|..+++|+-. +...+
T Consensus 2 s~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~-~~-n~p~p~--pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rk 76 (158)
T COG5201 2 SMIELESIDGEIFRVDENI-AERSILIKNMLCDST-AC-NYPIPA--PNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRK 76 (158)
T ss_pred CceEEEecCCcEEEehHHH-HHHHHHHHHHhcccc-cc-CCCCcc--cchhHHHHHHHHHHHHhccccCCCccChHhhhc
Confidence 3455554 78888887754 688888888875421 11 112445 89999999999999853 22211
Q ss_pred -------------CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcC
Q 004243 123 -------------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (766)
Q Consensus 123 -------------~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~ 156 (766)
++.+++.++.-+|+++.++.|.+.|+..+...+.
T Consensus 77 s~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 77 SKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred cCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 3446788999999999999999999999988776
No 341
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.17 E-value=5.1 Score=38.21 Aligned_cols=219 Identities=10% Similarity=0.026 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHHHHHHHHHHHhhhhHHHH
Q 004243 336 EKIVDLNYASELDPTLS----FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-------SVDCLELRAWLFIAADDYESA 404 (766)
Q Consensus 336 ~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~a~~~~~~g~~~~A 404 (766)
+|+..|++++++.|... .++.....+++.+|++++-+..|.+.+..-. +......+-..-....+.+--
T Consensus 45 ~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LL 124 (440)
T KOG1464|consen 45 EALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLL 124 (440)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHH
Confidence 49999999999998764 3566677889999999999988888763221 111111111111112222222
Q ss_pred HHHHHHHH---hccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHH
Q 004243 405 LRDTLALL---ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRF 481 (766)
Q Consensus 405 ~~~~~~al---~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~ 481 (766)
...|+..+ +-..+...+. .....+|.++...+.|.+-...++........++- +.-.+....-.+.|.
T Consensus 125 Q~FYeTTL~ALkdAKNeRLWF---KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG------edD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 125 QEFYETTLDALKDAKNERLWF---KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG------EDDQKKGTQLLEIYA 195 (440)
T ss_pred HHHHHHHHHHHHhhhcceeee---eccchHhhhheeHHHHHHHHHHHHHHHHHhccccC------chhhhccchhhhhHh
Confidence 23333332 2222222111 24456777777777776654433222111000000 000011111233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchh--hHHH----HHHHHHHCCCHHHHHHHHHHHHcccc-----ch---HHH
Q 004243 482 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHE--RLVY----EGWILYDTGHREEALSRAEKSISIER-----TF---EAF 547 (766)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~--~~~~----lg~~~~~~g~~~~A~~~~~~al~~~p-----~~---~~~ 547 (766)
.-...|..+.+-.+-...|++++.+...-|. ..-. -|..+.+.|++++|-..|-+|.+-.. .. --|
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKY 275 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKY 275 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHH
Confidence 5556777777777777888888876543332 2222 26778899999999999888887542 22 235
Q ss_pred HHHHHHHHhcCCCCCC
Q 004243 548 FLKAYILADTNLDPES 563 (766)
Q Consensus 548 ~~~~~~l~~~~~~~~~ 563 (766)
..++..+...+.+|-+
T Consensus 276 LVLANMLmkS~iNPFD 291 (440)
T KOG1464|consen 276 LVLANMLMKSGINPFD 291 (440)
T ss_pred HHHHHHHHHcCCCCCc
Confidence 5677777788877754
No 342
>PRK10941 hypothetical protein; Provisional
Probab=94.08 E-value=0.45 Score=46.67 Aligned_cols=65 Identities=12% Similarity=-0.024 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
..++-.+|.+.++++.|+.+.+..+...|+++.-+.-.|.+|.++|.+..|...++..++..|++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 44666788999999999999999999999999999999999999999999999999999999998
No 343
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.94 E-value=5.4 Score=39.19 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=17.9
Q ss_pred HHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 588 LNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
...++.+..++|+..+|++.++...+.
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 345666777777777777777666554
No 344
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.93 E-value=1.5 Score=35.79 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=60.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHH
Q 004243 391 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 470 (766)
Q Consensus 391 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al 470 (766)
+|.-++..|++-+|++..+..+...+++.... .....-|.+... .+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~---~lh~~QG~if~~------------------------------lA~ 48 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW---LLHRLQGTIFYK------------------------------LAK 48 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH---HHHHHHhHHHHH------------------------------HHH
Confidence 35677888999999999999998887776300 122222222221 222
Q ss_pred HcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 004243 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (766)
Q Consensus 471 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (766)
..+..+....+. -.+++.+.++..+.|..+..++.+|.-+-....|++++...++++.+
T Consensus 49 ~ten~d~k~~yL-----------l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 49 KTENPDVKFRYL-----------LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hccCchHHHHHH-----------HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 222122222222 23566677777777776666666666655555566666666666553
No 345
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.80 E-value=9.4 Score=39.44 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHhhcchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh
Q 004243 244 RLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA 292 (766)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 292 (766)
++.+...++|.....||.|-..+--+|.+++-.+.|++...--|....+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~a 78 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHA 78 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHH
Confidence 4566667788888899999999999999999999999988776666544
No 346
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.71 E-value=0.11 Score=47.73 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=54.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 486 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34567899999999999999999999999999999999999999999999999999988
No 347
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.67 E-value=0.79 Score=47.61 Aligned_cols=84 Identities=15% Similarity=0.014 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcC-CHHHHHHHHHHHHccCCC
Q 004243 669 DLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIG-DLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 669 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g-~~~~A~~~~~~al~~~p~ 746 (766)
.|+.++...+.++..|........+.+.+.+--..|.+++..+|+++.++ .-|.-.+..+ +.+.|...+.++|+.+|+
T Consensus 93 lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd 172 (568)
T KOG2396|consen 93 LYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD 172 (568)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence 34444444444444444444433344444444444555555555443333 2222222222 244445555555555555
Q ss_pred ChhHHH
Q 004243 747 HMETLD 752 (766)
Q Consensus 747 ~~~~~~ 752 (766)
+|..|.
T Consensus 173 sp~Lw~ 178 (568)
T KOG2396|consen 173 SPKLWK 178 (568)
T ss_pred ChHHHH
Confidence 444443
No 348
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.66 E-value=0.49 Score=40.88 Aligned_cols=99 Identities=9% Similarity=-0.077 Sum_probs=73.7
Q ss_pred CceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCC----CeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 004243 55 DSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKR----KTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 130 (766)
Q Consensus 55 ~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~----~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~~~ 130 (766)
.=|.|.|||..|-.-|.-|+--+.-|-.-|...-.+... .---+ -|-+|.-|..+|.|+-.|++. ++.-.=..
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYl--IDRDP~~FgpvLNylRhgklv-l~~l~eeG 97 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYL--IDRDPFYFGPVLNYLRHGKLV-LNKLSEEG 97 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceE--eccCcchHHHHHHHHhcchhh-hhhhhhhc
Confidence 468888999999999999988886775555433222211 11223 366799999999999999998 66633445
Q ss_pred HHHHhhhhChHhHHHHHHHHHHhhcC
Q 004243 131 LLSFANRFCCEEMKSACDAHLASLVG 156 (766)
Q Consensus 131 ~l~~a~~~~~~~l~~~c~~~l~~~~~ 156 (766)
+|.-|++|.+++|.....+.+.+...
T Consensus 98 vL~EAefyn~~~li~likd~i~dRd~ 123 (210)
T KOG2715|consen 98 VLEEAEFYNDPSLIQLIKDRIQDRDA 123 (210)
T ss_pred cchhhhccCChHHHHHHHHHHHHHhh
Confidence 88889999999999988888876553
No 349
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.39 E-value=4.6 Score=37.17 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=61.1
Q ss_pred HHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-C----
Q 004243 640 MTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLD-PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP-D---- 713 (766)
Q Consensus 640 ~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---- 713 (766)
+.+-.+..++....|+...+.|+ +.|...|-++-... -+.++..+.+|..|. ..+.++|+..+.+++++.+ +
T Consensus 100 L~~~tk~S~dP~llYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n 177 (203)
T PF11207_consen 100 LQEETKNSQDPYLLYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFN 177 (203)
T ss_pred HHHHHccCCCccHHHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCC
Confidence 33333333444445555555554 45555555433221 255888888996665 7889999999999999833 3
Q ss_pred hHHHHHHHHHHHHcCCHHHHH
Q 004243 714 LQMLHLRAAFYESIGDLTSAI 734 (766)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~A~ 734 (766)
...+..++.++.++|+++.|-
T Consensus 178 ~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHHHhcchhhhh
Confidence 234448999999999999874
No 350
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=13 Score=39.59 Aligned_cols=240 Identities=12% Similarity=0.013 Sum_probs=132.2
Q ss_pred HHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----hhhHHHHHHHHHHCCCHHHHHHHHHHHHcccc
Q 004243 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEGWILYDTGHREEALSRAEKSISIER 542 (766)
Q Consensus 467 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 542 (766)
.......|+.+...+..+..+...|+.+.|+..++..+. +.- .-.++.+|+++.-+.+|..|...+....+.+.
T Consensus 257 l~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd 334 (546)
T KOG3783|consen 257 KKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD 334 (546)
T ss_pred HHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 455566788888888888888888998888888887766 221 33456778888888899999988888776543
Q ss_pred ch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc-------
Q 004243 543 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI------- 614 (766)
Q Consensus 543 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------- 614 (766)
-. ..|..++.+..-.. -..+....|+-+.|...++....+
T Consensus 335 WS~a~Y~Yfa~cc~l~~--------------------------------~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~ 382 (546)
T KOG3783|consen 335 WSHAFYTYFAGCCLLQN--------------------------------WEVNQGAGGNEEKAQLYFKVGEELLANAGKN 382 (546)
T ss_pred hhHHHHHHHHHHHHhcc--------------------------------HHHHHhcccchhHHHHHHHHHHHHHHhcccc
Confidence 33 22222221111000 001111123333443333332222
Q ss_pred CChHHH-HHHHHHHHHhccHHHHHHHHHHHHHhc-cCCHHHHHHHh-hhcCHHHHHHHHHHHH---hc-CCCC-chhHHH
Q 004243 615 KHTRAH-QGLARVYYLKNELKAAYDEMTKLLEKA-QYSASAFEKRS-EYSDREMAKNDLNMAT---QL-DPLR-TYPYRY 686 (766)
Q Consensus 615 ~~~~~~-~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~-~~~~~~~A~~~~~~al---~~-~p~~-~~~~~~ 686 (766)
.|.+.+ ...+.-+...+. -.+. .-.. |-..-+|...| .....++.. -++... .. ++++ .--+..
T Consensus 383 ~P~E~f~~RKverf~~~~~-~~~~------~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL 454 (546)
T KOG3783|consen 383 LPLEKFIVRKVERFVKRGP-LNAS------ILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLL 454 (546)
T ss_pred CchhHHHHHHHHHHhcccc-cccc------ccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHH
Confidence 122221 111111111111 0000 0000 22233444444 111112211 111111 12 3332 334567
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhc----CCCh----HHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCCh
Q 004243 687 RAAVLMDDQKEVEAVEELSKAIAF----KPDL----QMLHLRAAFYESIGD-LTSAIRDSQAALCLDPNHM 748 (766)
Q Consensus 687 la~~~~~~g~~~~A~~~~~~al~~----~p~~----~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~ 748 (766)
+|.++...|+...|..+|..+++. ..+. .++|-+|.++..+|. ..+|.+++.+|-+...++.
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 899999999999999999888743 1111 356689999999888 9999999999998876653
No 351
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.33 E-value=6 Score=40.47 Aligned_cols=82 Identities=15% Similarity=-0.062 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHcCC------------HHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHHHH
Q 004243 339 VDLNYASELDPTLSFPYKYRAVAKMEEGQ------------IRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESAL 405 (766)
Q Consensus 339 ~~~~~al~~~p~~~~~~~~~a~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~A~ 405 (766)
..|++.++.+|.+..+|..+....-..-. .+.-+..+++|++.+|+...+.+ +-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45677778888888888777654443322 45566778888888886555544 555556666777777
Q ss_pred HHHHHHHhccCCccc
Q 004243 406 RDTLALLALESNYMM 420 (766)
Q Consensus 406 ~~~~~al~~~p~~~~ 420 (766)
+.+++++..+|++..
T Consensus 86 ~~we~~l~~~~~~~~ 100 (321)
T PF08424_consen 86 KKWEELLFKNPGSPE 100 (321)
T ss_pred HHHHHHHHHCCCChH
Confidence 888888888887763
No 352
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=93.02 E-value=0.37 Score=37.12 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcC--ChhhHHHHHHHHHhhCh
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDYGLEERA 173 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~--~~~n~~~~~~~a~~~~~ 173 (766)
++.+.+.+|+.+|+++++++|...|.+.+...+. +++.+-.++.+...+.-
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~ 63 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTP 63 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCH
Confidence 5678999999999999999999999999998886 35666666655555443
No 353
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.69 E-value=7.4 Score=41.98 Aligned_cols=102 Identities=18% Similarity=0.149 Sum_probs=54.7
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHH
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 552 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 552 (766)
+....+.+...+..+.++..+.-|.+.|.+.-.. ..+..++...++|.+|....++.-+.-| +.++.-+.
T Consensus 743 d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~~--dVy~pyaq 812 (1081)
T KOG1538|consen 743 DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFKD--DVYMPYAQ 812 (1081)
T ss_pred chhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccccc--cccchHHH
Confidence 3334444555555556666666666666553221 2334556677788887776655433333 33444444
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHH
Q 004243 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINAL 612 (766)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 612 (766)
.++... ++++|-+ +|.+.|+-.+|...+++..
T Consensus 813 wLAE~D-----------rFeEAqk-----------------AfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 813 WLAEND-----------RFEEAQK-----------------AFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred Hhhhhh-----------hHHHHHH-----------------HHHHhcchHHHHHHHHHhh
Confidence 444444 5555554 3445566666666665543
No 354
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=3.5 Score=44.01 Aligned_cols=122 Identities=18% Similarity=0.107 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHH--h----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHH-HH
Q 004243 636 AYDEMTKLLEKAQYSASAFEKR--S----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK-AI 708 (766)
Q Consensus 636 A~~~~~~~l~~~p~~~~~~~~~--~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 708 (766)
++..+...+..+|.++..+... . ..++...+...+..++..+|.+..+..++|......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444556665543322 2 345666777788888889999999999999888888777777766665 67
Q ss_pred hcCCChHH-HH------HHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 709 AFKPDLQM-LH------LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 709 ~~~p~~~~-~~------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
...|++.. .. .++.....+|+..++....+++..+.|.++++...+-..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 77787732 22 347888888999999999999999999998876666554
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.04 E-value=1.7 Score=36.69 Aligned_cols=69 Identities=20% Similarity=0.161 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHcCC---HHHHHHHHHHHHc-cCC--CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccc
Q 004243 352 SFPYKYRAVAKMEEGQ---IRAAISEIDRIIV-FKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNYMM 420 (766)
Q Consensus 352 ~~~~~~~a~~~~~~g~---~~~A~~~~~~al~-~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 420 (766)
....+++|.++....+ ..+.+..++..++ -.| .-+..|.++..+++.++|+.++++.+..++.+|++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566777888776654 5678888998886 444 3455777999999999999999999999999999985
No 356
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.02 E-value=2.4 Score=38.83 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=74.6
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHccC-----ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhh
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEY 660 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 660 (766)
.++..+|..|.+.|+.++|+++|.++.... ..+.+.++.++....+++........++-.......+ |..+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d-~~~~--- 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD-WERR--- 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch-HHHH---
Confidence 778899999999999999999999988772 2367888999999999999988888887654322111 1111
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK 711 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 711 (766)
......-|..++..++|.+|.+.|-.+..-.
T Consensus 113 --------------------nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 --------------------NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred --------------------HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 1233345666777899999998887775443
No 357
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.82 E-value=9 Score=34.14 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=37.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhcc
Q 004243 359 AVAKMEEGQIRAAISEIDRIIVFKL--SVDCLEL-RAWLFIAADDYESALRDTLALLALE 415 (766)
Q Consensus 359 a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~ 415 (766)
+.-+.+.|..++|+..|...-+..- -|....+ .|.+..+.|+..+|+..|..+-...
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 3444566778888888887754332 2222333 6777788888889988888776543
No 358
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.64 E-value=1.1 Score=43.32 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q 004243 684 YRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 761 (766)
Q Consensus 684 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 761 (766)
..++=..+...++++.|..+.++.+.++|.++ .+.-+|.+|.++|.+.-|++.++..++.-|+.+.+.....++.+..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~l~ 262 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLELR 262 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 34455578888999999999999999999885 4558999999999999999999999999999888766666555443
No 359
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.45 E-value=18 Score=39.29 Aligned_cols=109 Identities=16% Similarity=0.051 Sum_probs=56.4
Q ss_pred HHHHHHhCCHHHHHHHH------HHHHcc------CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhh
Q 004243 592 GSIYVECGKLDQAENCY------INALDI------KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (766)
Q Consensus 592 g~~~~~~g~~~~A~~~~------~~al~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 659 (766)
+..+...|+.++|+... +-++++ ...+.+..++.-+.....+.-|.+.|.++-.. ........+
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----ksiVqlHve 785 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----KSLVQLHVE 785 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----HHHhhheee
Confidence 45566667777766533 112222 12234444444444555555555555544211 111111114
Q ss_pred hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004243 660 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 707 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 707 (766)
.+++++|...-++--+. .+.+|+-.|.-+....+++||.+.|.+|
T Consensus 786 ~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 56777777666553332 2456666777777777777777777665
No 360
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.38 E-value=0.3 Score=31.99 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 004243 683 PYRYRAAVLMDDQKEVEAVEELSKAIAF 710 (766)
Q Consensus 683 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 710 (766)
++.++|.+|...|++++|..++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4556666666666666666666666543
No 361
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.33 E-value=3.3 Score=37.90 Aligned_cols=100 Identities=13% Similarity=-0.039 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
.++..+|..|.+.|+.++|++.|.++.+....... ....++.+-.+.+..+++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~---------------------------~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH---------------------------KIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH---------------------------HHHHHHHHHHHHHHhCCH
Confidence 57889999999999999999999987654322211 134566677788888999
Q ss_pred HHHHHHHHHHHhc--CCChHHHH-----HHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 698 VEAVEELSKAIAF--KPDLQMLH-----LRAAFYESIGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 698 ~~A~~~~~~al~~--~p~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~ 744 (766)
.....+..++-.. .+.++... ..|..+...++|.+|.+.|-.+..-.
T Consensus 90 ~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999888655 23333322 34788888999999999998776544
No 362
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.31 E-value=0.81 Score=47.67 Aligned_cols=85 Identities=16% Similarity=0.069 Sum_probs=50.8
Q ss_pred ccHHHHHHHHHHHHHhccCCHHHHHHHh-------hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHH
Q 004243 631 NELKAAYDEMTKLLEKAQYSASAFEKRS-------EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE 703 (766)
Q Consensus 631 g~~~~A~~~~~~~l~~~p~~~~~~~~~~-------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 703 (766)
+....|+..|.+++...|.....+.+++ ..|+.-.|+..-..+++++|....+++.|+.++...+++.+|+.+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3445566666666666666555544444 234555566666666666666666666666666666666666666
Q ss_pred HHHHHhcCCChH
Q 004243 704 LSKAIAFKPDLQ 715 (766)
Q Consensus 704 ~~~al~~~p~~~ 715 (766)
...+....|.+.
T Consensus 468 ~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 468 HWALQMSFPTDV 479 (758)
T ss_pred HHHHhhcCchhh
Confidence 655555555443
No 363
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.23 E-value=0.54 Score=45.50 Aligned_cols=89 Identities=15% Similarity=-0.026 Sum_probs=68.4
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH--HHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004243 670 LNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH--LRAAFYESIGDLTSAIRDSQAALCLDPNH 747 (766)
Q Consensus 670 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p~~ 747 (766)
|.++....|+++..|...+..-.+.|.|.+--..|.++++.+|.+..++ .-+.-+...++++.+...|.+++.++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 4445556678888888888777778888888888899999999885544 24555666789999999999999999999
Q ss_pred hhHHHHHHHHH
Q 004243 748 METLDLYNRAR 758 (766)
Q Consensus 748 ~~~~~~l~~~~ 758 (766)
|..|..+-+.+
T Consensus 176 p~iw~eyfr~E 186 (435)
T COG5191 176 PRIWIEYFRME 186 (435)
T ss_pred chHHHHHHHHH
Confidence 88887665544
No 364
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.90 E-value=1.7 Score=37.58 Aligned_cols=72 Identities=18% Similarity=0.062 Sum_probs=57.0
Q ss_pred hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHH
Q 004243 660 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLT 731 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~ 731 (766)
.++.+++...+...--+.|+.+.+-..-|.+++..|+|.+|+..++...+-.+..+... +++.|+..+||.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 34556666666666678899999999999999999999999999999888777765444 6688888888754
No 365
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.17 E-value=0.4 Score=30.64 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=26.6
Q ss_pred HHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 257 LALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
.+|..||.+-+..++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778999999999999999999999987
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.12 E-value=7 Score=36.03 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=56.5
Q ss_pred hhhhcccCccccHHHHHHHHHc-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----chhhHHHHHHHHHHCC
Q 004243 451 YDRWSSVDDIGSLAVINQMLIN-DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS----EHERLVYEGWILYDTG 525 (766)
Q Consensus 451 ~~~~~~~~~~~~l~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~lg~~~~~~g 525 (766)
|-.|+..+|..+...|-++-.. .-++++..+.+|..|. ..+.++|+..+-+++++.+. +++.+..++.++...|
T Consensus 114 Yy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 114 YYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 3345444444443333322221 1256788888888777 57899999999999987544 4889999999999999
Q ss_pred CHHHHH
Q 004243 526 HREEAL 531 (766)
Q Consensus 526 ~~~~A~ 531 (766)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 999874
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.89 E-value=14 Score=39.60 Aligned_cols=126 Identities=18% Similarity=0.157 Sum_probs=66.7
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc-hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHH
Q 004243 488 LRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTY 566 (766)
Q Consensus 488 ~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~ 566 (766)
...|+++++.+..... ++.|.- ..-...++..+.+.|.++.|+..-+ +|+. .+.++. +.|
T Consensus 272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~~~--rFeLAl---~lg-------- 332 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT-----DPDH--RFELAL---QLG-------- 332 (443)
T ss_dssp HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------HHH--HHHHHH---HCT--------
T ss_pred HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-----ChHH--HhHHHH---hcC--------
Confidence 4467888877766522 222332 3335566777888888888876432 2222 122221 122
Q ss_pred HHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHH
Q 004243 567 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTK 642 (766)
Q Consensus 567 ~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 642 (766)
+++.|.+..+..- ....|..||...+..|+++-|..+|+++- -+..+..+|...|+.+.-.+..+.
T Consensus 333 ---~L~~A~~~a~~~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 333 ---NLDIALEIAKELD-DPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp ----HHHHHHHCCCCS-THHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred ---CHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHH
Confidence 6666665444333 24578888888888899888888888763 344556666667766444343333
No 368
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=89.88 E-value=0.48 Score=45.23 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=59.9
Q ss_pred CCceEEEEcCeEEEeehHHHhcCCHH--HHHHhcCCCc---cCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHHHH
Q 004243 54 DDSVTFCVRDKEISFVRNKIASLSSP--FKAMLYGGFV---ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIV 128 (766)
Q Consensus 54 ~~dv~~~~~~~~~~~h~~~l~~~s~~--f~~~~~~~~~---e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~ 128 (766)
.--+|..|++..|-+-+.+|-+. +. .-.||.+++. -...++.++. ++++..+|+++|+|--||.+..-+.-.|
T Consensus 95 ~~~~t~lvd~~rf~v~q~llt~~-p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSv 172 (438)
T KOG3840|consen 95 GDKVCLLVDQTRFLVSQRLLTSK-PDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSV 172 (438)
T ss_pred CcceEEEeeeEEEEeeeeeecCC-cchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCch
Confidence 33688889999999999888543 32 2567777643 2234466653 6899999999999999999885344445
Q ss_pred HHHHHHhhhhChH
Q 004243 129 LELLSFANRFCCE 141 (766)
Q Consensus 129 ~~~l~~a~~~~~~ 141 (766)
-+|-++.|+++|+
T Consensus 173 pELrEACDYLlip 185 (438)
T KOG3840|consen 173 SELREACDYLLVP 185 (438)
T ss_pred HHHHhhcceEEee
Confidence 5666666665554
No 369
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.43 E-value=2.2 Score=44.05 Aligned_cols=123 Identities=15% Similarity=0.060 Sum_probs=59.3
Q ss_pred HcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhc
Q 004243 364 EEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 442 (766)
Q Consensus 364 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~ 442 (766)
..|+...|-.....+++..| .|....+.+.+...+|+|+.|.+.+..+-..-.... .+...+-.-....++|+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~------~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD------STLRCRLRSLHGLARWR 374 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc------hHHHHHHHhhhchhhHH
Confidence 34566666555555555555 344444466666666666666555544333211111 12333333334444555
Q ss_pred hHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 004243 443 PADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (766)
Q Consensus 443 ~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 510 (766)
.|. ....-.+...-++++...-.+.....+|-+++|...+++.+.++|..
T Consensus 375 ~a~------------------s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 375 EAL------------------STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHH------------------HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 442 11133333334444444444444455566666666666666665543
No 370
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.93 E-value=1.7 Score=45.35 Aligned_cols=83 Identities=19% Similarity=0.106 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHc---CCHHHHHHHHHHHHccCCCHHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEE---GQIRAAISEIDRIIVFKLSVDC-LELRAWLFIAADDYESALRDTLALL 412 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~~g~~~~A~~~~~~al 412 (766)
|+..|.+++...|.....+.++|.++++. |+.-.|+..+..+++++|.... ++.++.++..++++.+|+.....+.
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 89999999999999999999999999875 5777899999999999995554 4559999999999999999988888
Q ss_pred hccCCcc
Q 004243 413 ALESNYM 419 (766)
Q Consensus 413 ~~~p~~~ 419 (766)
...|.+.
T Consensus 473 ~~~Ptd~ 479 (758)
T KOG1310|consen 473 MSFPTDV 479 (758)
T ss_pred hcCchhh
Confidence 8888666
No 371
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.80 E-value=0.76 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 004243 682 YPYRYRAAVLMDDQKEVEAVEELSKAIAF 710 (766)
Q Consensus 682 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 710 (766)
.++..+|.+-+..++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556666666666666666666666554
No 372
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.32 E-value=0.74 Score=26.54 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHH
Q 004243 513 RLVYEGWILYDTGHREEALSRAE 535 (766)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~ 535 (766)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556666666666666655543
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.29 E-value=0.76 Score=26.47 Aligned_cols=23 Identities=22% Similarity=0.043 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHH
Q 004243 683 PYRYRAAVLMDDQKEVEAVEELS 705 (766)
Q Consensus 683 ~~~~la~~~~~~g~~~~A~~~~~ 705 (766)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666665543
No 374
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.18 E-value=30 Score=37.20 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=97.7
Q ss_pred hCCHHHHHHHHHHHHcc-----------C---ChHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hc-----------
Q 004243 598 CGKLDQAENCYINALDI-----------K---HTRAHQGLARVYYLKNELKAAYDEMTKLLE-----KA----------- 647 (766)
Q Consensus 598 ~g~~~~A~~~~~~al~~-----------~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~----------- 647 (766)
...|++|...|.-++.. . |.+.+..++.+...+|+.+-|....++++= ..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566777777766654 1 336778888888888888877777776651 11
Q ss_pred -----cCCHHHHHH-------HhhhcCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hCCCHHHHHHHHHHH-----H
Q 004243 648 -----QYSASAFEK-------RSEYSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLM-DDQKEVEAVEELSKA-----I 708 (766)
Q Consensus 648 -----p~~~~~~~~-------~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a-----l 708 (766)
|.|...|.. ++..|-+..|.+..+-.+.++|. +|.+...+-.+|. +..+|+=-++.++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 222222211 12446778899999988999997 7777666665554 445665555555544 3
Q ss_pred hcCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCC
Q 004243 709 AFKPDLQMLHLRAAFYESIGD---LTSAIRDSQAALCLDPN 746 (766)
Q Consensus 709 ~~~p~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 746 (766)
..-|+..--..+|..|..... ...|...+.+|+...|.
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 345665555577888877665 67899999999999884
No 375
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.07 E-value=2.2 Score=34.25 Aligned_cols=58 Identities=24% Similarity=0.169 Sum_probs=45.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC---------chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 487 LLRLNCQKAAMRCLRLARNHSSS---------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 487 ~~~~g~~~~A~~~~~~a~~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
..+.|+|.+|++.+.+..+.... ...+..++|.++...|++++|+..+++++++....
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 45789999998888877654322 24567788999999999999999999999876443
No 376
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.01 E-value=27 Score=34.84 Aligned_cols=91 Identities=22% Similarity=0.239 Sum_probs=62.8
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---HHHH-HHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 669 DLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL---QMLH-LRAAFYESIGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 669 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~-~la~~~~~~g~~~~A~~~~~~al~~~ 744 (766)
.|.....+.| +|.+-.|.+....+..-.+.++...+.... .|.- ..++ .+|.++.++|+.++|...|++++.+.
T Consensus 318 LYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 318 LYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred HHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhc-ccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 3443344444 456666777777666666777776665443 3332 2333 68999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhh
Q 004243 745 PNHMETLDLYNRARDQA 761 (766)
Q Consensus 745 p~~~~~~~~l~~~~~~~ 761 (766)
++..+...+..++....
T Consensus 396 ~~~aer~~l~~r~~~l~ 412 (415)
T COG4941 396 RNAAERAFLRQRLDRLA 412 (415)
T ss_pred CChHHHHHHHHHHHHhh
Confidence 99888877777665543
No 377
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=0.84 Score=45.33 Aligned_cols=83 Identities=17% Similarity=0.079 Sum_probs=69.3
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 004243 681 TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 759 (766)
Q Consensus 681 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 759 (766)
.....+++.+-++.+.+..|+.....++..+++. +++|.++..+....++++|++.++.+....|++......+..+.+
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 4455568888888999999998888888877776 778889999999999999999999999999999888877777666
Q ss_pred hhhh
Q 004243 760 QASH 763 (766)
Q Consensus 760 ~~~~ 763 (766)
..+.
T Consensus 355 ~~~~ 358 (372)
T KOG0546|consen 355 KKKQ 358 (372)
T ss_pred HHHH
Confidence 5543
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.77 E-value=8.9 Score=40.98 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=62.1
Q ss_pred HHHhCCHHHHHHHHHHH--HccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh-hhcCHHHHHHHHH
Q 004243 595 YVECGKLDQAENCYINA--LDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-EYSDREMAKNDLN 671 (766)
Q Consensus 595 ~~~~g~~~~A~~~~~~a--l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~-~~~~~~~A~~~~~ 671 (766)
....|+++++....+.. +..-|.+-...++.-+..+|-.+.|+..- .++...+.++ +.|+.+.|.+..+
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLAl~lg~L~~A~~~a~ 342 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELALQLGNLDIALEIAK 342 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHHHHCT-HHHHHHHCC
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHHHhcCCHHHHHHHHH
Confidence 34578888877766522 22224556677777788888887776642 3345556666 6677777776543
Q ss_pred HHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004243 672 MATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 707 (766)
Q Consensus 672 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 707 (766)
+ .+++..|..||...+.+|+++-|.++|+++
T Consensus 343 ~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 343 E-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp C-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred h-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 2 346778999999999999999999999886
No 379
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.63 E-value=40 Score=36.36 Aligned_cols=74 Identities=16% Similarity=-0.009 Sum_probs=50.1
Q ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCC----------------CHHHHHH----HHHHHHhhhh
Q 004243 346 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV-----FKL----------------SVDCLEL----RAWLFIAADD 400 (766)
Q Consensus 346 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~~~----------------~~~~~~~----~a~~~~~~g~ 400 (766)
...|-+...+...+.+...+|+.+-|....++++= ..| .....|+ .-....+.|-
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34577777888888888888887777666666541 122 1111222 2333456799
Q ss_pred HHHHHHHHHHHHhccCC-cc
Q 004243 401 YESALRDTLALLALESN-YM 419 (766)
Q Consensus 401 ~~~A~~~~~~al~~~p~-~~ 419 (766)
+..|.++.+-++.++|. ++
T Consensus 358 ~rTA~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDP 377 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCc
Confidence 99999999999999998 66
No 380
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=87.34 E-value=1.1 Score=43.53 Aligned_cols=83 Identities=5% Similarity=0.021 Sum_probs=72.0
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHH-HHHHHHHCCCHHHHHHHHHHHHccccc
Q 004243 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY-EGWILYDTGHREEALSRAEKSISIERT 543 (766)
Q Consensus 465 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (766)
.+.++...-|+++..|...+......|.|.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.++++.+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3456666778999999999988888899999999999999999999999987 566678899999999999999999998
Q ss_pred h-HHH
Q 004243 544 F-EAF 547 (766)
Q Consensus 544 ~-~~~ 547 (766)
. ..|
T Consensus 175 ~p~iw 179 (435)
T COG5191 175 SPRIW 179 (435)
T ss_pred CchHH
Confidence 8 444
No 381
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.96 E-value=43 Score=35.08 Aligned_cols=108 Identities=13% Similarity=-0.014 Sum_probs=76.6
Q ss_pred ccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHH
Q 004243 332 NLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDT 408 (766)
Q Consensus 332 ~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~ 408 (766)
..|+- |-+....++...|.+|.....++.+...+|+|+.|...+..+-..-. .......+-.....+|++++|...-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 35553 66777788999999999999999999999999999998876543333 2333444677778899999999998
Q ss_pred HHHHhccCCcccccccchhhhHHhHHHHHHhhhchHh
Q 004243 409 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPAD 445 (766)
Q Consensus 409 ~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~ 445 (766)
.-.+.-.-.++. .....+-...+.+.++++.
T Consensus 381 ~~~l~~eie~~e------i~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 381 EMMLSNEIEDEE------VLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHhccccCChh------heeeecccHHHHhHHHHHH
Confidence 888875555552 2223333345556666663
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.74 E-value=6.2 Score=29.97 Aligned_cols=59 Identities=8% Similarity=0.008 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHH-H---HHHHHHhhhhHHHHHHHHHHHHh
Q 004243 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLE-L---RAWLFIAADDYESALRDTLALLA 413 (766)
Q Consensus 355 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~---~a~~~~~~g~~~~A~~~~~~al~ 413 (766)
....|.-++..++.++|+..++++++..+++..-+ . +..+|...|+|.+++++-..-+.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667788889999999999998877555433 2 56677888999888877655444
No 383
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.24 E-value=4 Score=32.80 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=33.7
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 692 MDDQKEVEAVEELSKAIAFKPDL----------QMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 692 ~~~g~~~~A~~~~~~al~~~p~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 746 (766)
.+.|++.+|++.+.+..+..... ..+.++|.++...|++++|+..+++++++...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44577777766666665542111 12235677777777777777777777776433
No 384
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.06 E-value=6.9 Score=42.21 Aligned_cols=99 Identities=14% Similarity=-0.025 Sum_probs=63.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHH
Q 004243 389 ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 468 (766)
Q Consensus 389 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 468 (766)
+..|.-.++..+|..+++.|...+...|.+.... .
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~-----------------~---------------------------- 392 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSD-----------------R---------------------------- 392 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhh-----------------H----------------------------
Confidence 3456667788888888888888888777665300 0
Q ss_pred HHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 469 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 469 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
.+.....++.+|..+.+.+.|.+.++.|-+.+|.++-....+-.+....|.-++|+....+...
T Consensus 393 -------FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 393 -------FAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred -------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 0122334556666666777777777777777777666666666666666666777666655443
No 385
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.79 E-value=7.9 Score=38.04 Aligned_cols=65 Identities=8% Similarity=-0.076 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (766)
...++..++..+...|+++.+++.+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999987763
No 386
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.71 E-value=6.9 Score=38.44 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 682 YPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 682 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
.++..++..+...|+++.+++.+++.+..+|-+ +.+..+-..|...|+...|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 455566667777777777777777777777766 4444666777777777777777776554
No 387
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.11 E-value=2.6 Score=26.62 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHCCCHHHHHHH
Q 004243 513 RLVYEGWILYDTGHREEALSR 533 (766)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~ 533 (766)
.++.+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 455556666666666666666
No 388
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.87 E-value=50 Score=34.14 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH----HcCCHHHHHHH
Q 004243 664 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ--KEVEAVEELSKAIAFKPDL-QMLHLRAAFYE----SIGDLTSAIRD 736 (766)
Q Consensus 664 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~-~~~~~la~~~~----~~g~~~~A~~~ 736 (766)
++-+.....+++.+|+...+|..+.+++.+.+ ++..=+...+++++.+|.+ ..|..+-.+.. ......+=+++
T Consensus 92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f 171 (421)
T KOG0529|consen 92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF 171 (421)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH
Confidence 44445555566666666666666666665543 2455566666666666655 44442211111 11223444555
Q ss_pred HHHHHccCCCChhHHHHHHHHHH
Q 004243 737 SQAALCLDPNHMETLDLYNRARD 759 (766)
Q Consensus 737 ~~~al~~~p~~~~~~~~l~~~~~ 759 (766)
..+++.-++.|-.+|.....+..
T Consensus 172 tt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 172 TTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHhccchhhhHHHHHHHHHH
Confidence 55666666666666555544433
No 389
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=84.85 E-value=30 Score=31.27 Aligned_cols=66 Identities=9% Similarity=-0.023 Sum_probs=37.8
Q ss_pred CChhHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH-----CCCHHHHHHHHHHHHccc
Q 004243 475 GKSFLRFRQSLLLLR-LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD-----TGHREEALSRAEKSISIE 541 (766)
Q Consensus 475 ~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~ 541 (766)
..|+....+|..+.. ..++++|...|..--+.+ ..+...+.+|..+.. .++...|++.|+.+-..+
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n 103 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN 103 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC
Confidence 455666666665543 456677776666544332 235555566554432 345777777777776643
No 390
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.18 E-value=20 Score=36.92 Aligned_cols=123 Identities=21% Similarity=0.182 Sum_probs=91.2
Q ss_pred cHHHHHHHHHHHHHhccCCHHHHHHHhh------hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC----CHHHHH
Q 004243 632 ELKAAYDEMTKLLEKAQYSASAFEKRSE------YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ----KEVEAV 701 (766)
Q Consensus 632 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~ 701 (766)
..++-+.....++..+|+...+|+.+.. ..++..-+...+++++.+|.+-.+|..+=.+..... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 4566677888889999999999888871 234678889999999999999888877666655442 356778
Q ss_pred HHHHHHHhcCCCh-HHHHHHHHHHHH------cCC------HHHHHHHHHHHHccCCCChhHHHHH
Q 004243 702 EELSKAIAFKPDL-QMLHLRAAFYES------IGD------LTSAIRDSQAALCLDPNHMETLDLY 754 (766)
Q Consensus 702 ~~~~~al~~~p~~-~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~l 754 (766)
++.++++.-++.+ .+|+.+..++.. .|+ ...-++.-..|+-.+|++..+|...
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 8889999888888 788876666552 242 2344566677888899998887654
No 391
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.67 E-value=40 Score=33.48 Aligned_cols=33 Identities=24% Similarity=0.086 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 682 YPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 682 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
.+-..++.+..++|+..+|++.++...+..|-.
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~ 308 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL 308 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH
Confidence 344568888889999999999998887776633
No 392
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.25 E-value=2.7 Score=26.53 Aligned_cols=20 Identities=20% Similarity=-0.074 Sum_probs=9.1
Q ss_pred HHHHHHHHHhCCCHHHHHHH
Q 004243 684 YRYRAAVLMDDQKEVEAVEE 703 (766)
Q Consensus 684 ~~~la~~~~~~g~~~~A~~~ 703 (766)
+..+|..+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34444444444555555554
No 393
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=83.07 E-value=7 Score=37.86 Aligned_cols=63 Identities=16% Similarity=0.022 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 482 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
++=..+...++++.|....++.+..+|.++.-+.-.|.+|.+.|.+.-|++.++..++..|+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 344567888999999999999999999999999999999999999999999999999999987
No 394
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.22 E-value=2.6 Score=28.01 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 719 LRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 719 ~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
.+|..|..+|+.+.|.+.++.++.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 456666666666666666666663
No 395
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.21 E-value=50 Score=31.92 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCC
Q 004243 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIA-ADDYESALRDTLALLALESN 417 (766)
Q Consensus 355 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~ 417 (766)
+..+|.+..+.|+|++.+..+++++..++ +.+...++..+|-. .|....+.+.+.........
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc
Confidence 56788999999999999999999999887 44555556666633 57777777777666654443
No 396
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.65 E-value=9.6 Score=28.98 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH----HHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 686 YRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH----LRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 686 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
..|.-++...+.++|+..++++++..++.+.-+ .+..+|...|++.+.+++--+=++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556678889999999999998877774433 567778888998888877655443
No 397
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=81.42 E-value=22 Score=38.40 Aligned_cols=110 Identities=17% Similarity=0.051 Sum_probs=57.6
Q ss_pred cCCCChhHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHH-HHccccch-HHH
Q 004243 472 NDPGKSFLRFR--QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK-SISIERTF-EAF 547 (766)
Q Consensus 472 ~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~-~~~ 547 (766)
.+|.++..+.. +...+...++...+.-.....+..+|++..+..++|......|....+...+.. +....|++ ...
T Consensus 60 ~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (620)
T COG3914 60 INDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFL 139 (620)
T ss_pred cCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHH
Confidence 34444444222 244444455555555555555555555555555555555555544444444433 44444444 111
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC
Q 004243 548 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH 616 (766)
Q Consensus 548 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 616 (766)
. +...++.+|......|+..++....+++....+
T Consensus 140 ~-----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 140 G-----------------------------------HLIRFYQLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred h-----------------------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 1 112233367777777888888888777777743
No 398
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=81.19 E-value=31 Score=41.11 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcCCHHHHHH------HHH-HHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc-------cch
Q 004243 479 LRFRQSLLLLRLNCQKAAMR------CLR-LARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE-------RTF 544 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~------~~~-~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~ 544 (766)
-....|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|++++|+..-.++.-+. +.+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34556666777788887777 444 3344567888899999999999999999999877765443 222
Q ss_pred --HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhch---hhcccc--chhHHhhHHHHHHhCCHHHHHHHHHHHHccC--
Q 004243 545 --EAFFLKAYILADTNLDPESSTYVIQLLEEALRCP---SDGLRK--GQALNNLGSIYVECGKLDQAENCYINALDIK-- 615 (766)
Q Consensus 545 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~---~~~l~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 615 (766)
..+.+++....... ..... +..+..|.... ..-..| .....+++.++...++++.|+.+.+.|.+..
T Consensus 1014 t~~~y~nlal~~f~~~-~~~~a---l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVK-NLSGA---LKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred HHHHhhHHHHHHHhcc-Cccch---hhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 44455553333333 12211 11222222211 111223 3566788999999999999999999998862
Q ss_pred --------ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004243 616 --------HTRAHQGLARVYYLKNELKAAYDEMTKLL 644 (766)
Q Consensus 616 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~l 644 (766)
....+..+++.+...+++..|....+...
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 12345556666666666666555544443
No 399
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.96 E-value=3.7 Score=24.66 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q 004243 728 GDLTSAIRDSQAALCLDPNHMETLDLYNRAR 758 (766)
Q Consensus 728 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 758 (766)
|+.+.|...|++++...|.+++.|..+.+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5677888888888888888888877765543
No 400
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=80.04 E-value=70 Score=32.17 Aligned_cols=265 Identities=16% Similarity=0.096 Sum_probs=142.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--CCCc--------hhhHHHHHHHHHHCCCHHHHHHHHHHHHc---cccchHHH
Q 004243 481 FRQSLLLLRLNCQKAAMRCLRLARNH--SSSE--------HERLVYEGWILYDTGHREEALSRAEKSIS---IERTFEAF 547 (766)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~ 547 (766)
...+......+++++++..+...+.. .|.+ ......+|..+.+.|+.++-....+..-. .-+...+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka- 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA- 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH-
Confidence 34455555666778888888777763 1221 23556788888888887765444433221 1111100
Q ss_pred HHHHHHHHhcC-CCCCChHHHHHHHHHHHhchhhccc---cchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CC---
Q 004243 548 FLKAYILADTN-LDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIYVECGKLDQAENCYINALDI----KH--- 616 (766)
Q Consensus 548 ~~~~~~l~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~--- 616 (766)
..+...+.+.- -.+......++...+.+++..+--+ ....-..+..+|...++|.+|+......+.. ++
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 00001111110 0111111222333333333322211 1234456788999999999999888776654 22
Q ss_pred -hHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-----cCCHHH--HHHHh----hhcCHHHHHHHHHHHHhcCC---CCc
Q 004243 617 -TRAHQGLARVYYLKNELKAAYDEMTKLLEKA-----QYSASA--FEKRS----EYSDREMAKNDLNMATQLDP---LRT 681 (766)
Q Consensus 617 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~--~~~~~----~~~~~~~A~~~~~~al~~~p---~~~ 681 (766)
.+++..-..+|+...+..+|...+..+-... |....+ -..-| .-.+|.-|..+|-.+++-.. ++.
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 2466677788888888888888777664321 211111 11111 22678888888888886432 112
Q ss_pred hh---HHHHHHHHHhCCCHHHHHHH--HHHHHhcC-CChHHHHHHHHHHHH--cCCHHHHHHHHHHHHccCCC
Q 004243 682 YP---YRYRAAVLMDDQKEVEAVEE--LSKAIAFK-PDLQMLHLRAAFYES--IGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 682 ~~---~~~la~~~~~~g~~~~A~~~--~~~al~~~-p~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~ 746 (766)
.+ +.++-.+-...+..++--.. -+.+++.. |+-.+....+..+.. +.+|+.|+..|+.=+..||-
T Consensus 247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 22 22233333344555543333 34455543 333555566666654 46788999999888877664
No 401
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.00 E-value=13 Score=28.22 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=12.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 004243 687 RAAVLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 687 la~~~~~~g~~~~A~~~~~~al 708 (766)
.|.-+-+.|++.+|+.+|++++
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3444455677777766666554
No 402
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=79.91 E-value=46 Score=32.16 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=82.7
Q ss_pred HHhhHHHHHHhCCHHHHHHHHHHHHccCC---hHHHHHHHHHHH-HhccHHHHHHHHHHHHHhccCC--HHHHHHHhhh-
Q 004243 588 LNNLGSIYVECGKLDQAENCYINALDIKH---TRAHQGLARVYY-LKNELKAAYDEMTKLLEKAQYS--ASAFEKRSEY- 660 (766)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~- 660 (766)
+..++.+....|+|++.+.++++++..++ .+-...+..+|- ..|....+.+.+.......... .........+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 45678889999999999999999998843 233344444442 2344445555555544433332 1111111000
Q ss_pred --------cCHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHh-----CC-----CHHHHHHHHHHHHhc-----CCC
Q 004243 661 --------SDREMAKNDLNMATQLDPLRT----YPYRYRAAVLMD-----DQ-----KEVEAVEELSKAIAF-----KPD 713 (766)
Q Consensus 661 --------~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~-----~g-----~~~~A~~~~~~al~~-----~p~ 713 (766)
.--.+.+..++..+-....++ ..+-..|..|.- .| -.++|...|++|+++ .|.
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Confidence 001333344443222111121 111223433321 12 236788888888754 677
Q ss_pred hHHHH----HHHHHH-HHcCCHHHHHHHHHHHHcc
Q 004243 714 LQMLH----LRAAFY-ESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 714 ~~~~~----~la~~~-~~~g~~~~A~~~~~~al~~ 743 (766)
+|... +.+..| ...|+.++|++..++++..
T Consensus 164 ~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 164 HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77654 445555 4489999999988877653
No 403
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=79.73 E-value=1.4e+02 Score=35.43 Aligned_cols=333 Identities=13% Similarity=0.022 Sum_probs=163.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHH
Q 004243 392 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI 471 (766)
Q Consensus 392 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~ 471 (766)
...++....|+.|+..|+++-...|+...-+ ++....|........-..... +-..++..|++ +.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~ 546 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGY---EAQFRLGITLLEKASEQGDPR-----------DFTQALSEFSY-LH 546 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccch---HHHHHhhHHHHHHHHhcCChH-----------HHHHHHHHHHH-hc
Confidence 4556777889999999999988888776311 344444433322111000000 00001222222 23
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHC-----CCHHHHHHHHHHHHccccch--
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-----GHREEALSRAEKSISIERTF-- 544 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~p~~-- 544 (766)
-.|..|--|...|.+|.++|++++-++.+..|++..|+.|..-...-.+-+++ .+-..|....--++..-|..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 45777888999999999999999999999999999999887654443333222 12334555555556666654
Q ss_pred HHH-HHHHHHH-HhcC------CCCCChHHHHHHHHHH-----------Hhchhhccc--cchhHHhhHHHHHHhCCHHH
Q 004243 545 EAF-FLKAYIL-ADTN------LDPESSTYVIQLLEEA-----------LRCPSDGLR--KGQALNNLGSIYVECGKLDQ 603 (766)
Q Consensus 545 ~~~-~~~~~~l-~~~~------~~~~~~~~~~~~~~~A-----------~~~~~~~l~--~~~~~~~lg~~~~~~g~~~~ 603 (766)
... ..+...+ .... +++......-.+++-- .+.++++++ +-.+..+.-.+....|.++-
T Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (932)
T PRK13184 627 SREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFYVACDLGNWEF 706 (932)
T ss_pred chHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHHHHHHhccHHH
Confidence 111 0111111 1110 1111111111111111 122222222 22444444455567888876
Q ss_pred HHHHHHHHHcc----CChH-H----------HHHHHHHHHHhccHHHHHHHHHHHHHhccCCHH-HHH---HHhhh-cCH
Q 004243 604 AENCYINALDI----KHTR-A----------HQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS-AFE---KRSEY-SDR 663 (766)
Q Consensus 604 A~~~~~~al~~----~~~~-~----------~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~---~~~~~-~~~ 663 (766)
+.+.....-+. +-+. . +..-..+......++++.+.+.. ..|.... +.. ..+.. ++.
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 783 (932)
T PRK13184 707 FSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDPTLILYAFDLFAIQALLDEEG 783 (932)
T ss_pred HHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHhccc
Confidence 65544433221 1111 1 11112223333345555443222 2221111 111 11111 111
Q ss_pred ---HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004243 664 ---EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA---FKPDLQMLHLRAAFYESIGDLTSAIRDS 737 (766)
Q Consensus 664 ---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~la~~~~~~g~~~~A~~~~ 737 (766)
-.+++.+++...-...........-.+|.-..++++|-+.+.+--. .+..++...+.|..+...++.+-|...|
T Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (932)
T PRK13184 784 ESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHF 863 (932)
T ss_pred hHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHH
Confidence 2222222222211112234445566678888999999888854311 1222345557788888899999999999
Q ss_pred HHHHc
Q 004243 738 QAALC 742 (766)
Q Consensus 738 ~~al~ 742 (766)
....+
T Consensus 864 ~~~~~ 868 (932)
T PRK13184 864 SGCRE 868 (932)
T ss_pred hhccc
Confidence 88773
No 404
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.28 E-value=1.1e+02 Score=33.79 Aligned_cols=86 Identities=9% Similarity=-0.055 Sum_probs=65.1
Q ss_pred hhcCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHH
Q 004243 659 EYSDREMAKNDLNMATQLDPLR------TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYESIGDLT 731 (766)
Q Consensus 659 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~~~g~~~ 731 (766)
+..+|..+++.|...+..-|.+ +.....++.+|....+.+.|.+++++|-+.+|.++.-. ..-.+...-|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 4567788888888887666544 56677888899999999999999999999888885443 4455555678888
Q ss_pred HHHHHHHHHHccC
Q 004243 732 SAIRDSQAALCLD 744 (766)
Q Consensus 732 ~A~~~~~~al~~~ 744 (766)
+|+....+.....
T Consensus 446 ~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 446 EALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHhhh
Confidence 8888887766553
No 405
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=78.25 E-value=0.78 Score=45.22 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=41.1
Q ss_pred hhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCcccccc
Q 004243 153 SLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMK 199 (766)
Q Consensus 153 ~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~ 199 (766)
..++ ++||+.|+--+....++.|.+.|+.|+..|+.+++.++--+.
T Consensus 70 p~l~-~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~ 115 (317)
T PF11822_consen 70 PSLT-PSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLN 115 (317)
T ss_pred CcCC-cCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcc
Confidence 3577 999999999999999999999999999999999988765443
No 406
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=77.70 E-value=8.1 Score=36.25 Aligned_cols=97 Identities=16% Similarity=-0.017 Sum_probs=63.9
Q ss_pred CCCceE-EEEcCeEEEeehHHH-hcCCHHHHHHhcCCCc--cCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCH--H
Q 004243 53 EDDSVT-FCVRDKEISFVRNKI-ASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP--G 126 (766)
Q Consensus 53 ~~~dv~-~~~~~~~~~~h~~~l-~~~s~~f~~~~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~--~ 126 (766)
++.|++ +-|||+.+..-..-| +-.-.....||++... .+.+....| |=+-..|+-||+|+-|..+. ++. .
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~-lpe~f~ 81 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALL-LPEDFA 81 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccc-cchhhh
Confidence 455555 557776665433323 3344445677776322 223446777 44468999999999996665 555 6
Q ss_pred HHHHHHHHhhhhChHhHHHHHHHHHHh
Q 004243 127 IVLELLSFANRFCCEEMKSACDAHLAS 153 (766)
Q Consensus 127 ~~~~~l~~a~~~~~~~l~~~c~~~l~~ 153 (766)
++..|..-|+.|+++.+...+.+-...
T Consensus 82 e~~~L~rEA~f~~l~~~~~~l~~~~~~ 108 (221)
T KOG2723|consen 82 EVERLVREAEFFQLEAPVTYLLNSGQI 108 (221)
T ss_pred hHHHHHHHHHHHccccHHHHHhccccc
Confidence 688899999999999888766655443
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.65 E-value=6.8 Score=26.07 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=19.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 515 VYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
+.++.+|...|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4677888888888888888888874
No 408
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=77.60 E-value=92 Score=32.18 Aligned_cols=34 Identities=6% Similarity=-0.086 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 510 (766)
+...+.+|.+..-+++|..|.+++-+|+...|.+
T Consensus 247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 3445666777777777777777777777776753
No 409
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=76.58 E-value=35 Score=35.20 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 260 HQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 260 ~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
..-|...+++|+|..|.--|..|+++
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLel 205 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALEL 205 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34466677888888888888888876
No 410
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.94 E-value=91 Score=31.32 Aligned_cols=181 Identities=14% Similarity=0.033 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004243 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWLFIAADDYESALRDTLALLA 413 (766)
Q Consensus 336 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 413 (766)
+|+..=.-...+-|..++++-..+...++..+... ..+++ +..+.-.-......+-.+++...+.+++.
T Consensus 214 EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~ 284 (415)
T COG4941 214 EAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALA 284 (415)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHH
Confidence 36666666677888888888777776665433211 11111 00000011222233445677777777776
Q ss_pred ccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCH
Q 004243 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (766)
Q Consensus 414 ~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 493 (766)
...--+ +.+.+.+......-.. ....|...|..+..++..-..+|.+-.+.+.......-.
T Consensus 285 ~~~pGP--------YqlqAAIaa~HA~a~~-----------aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 285 SRRPGP--------YQLQAAIAALHARARR-----------AEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred cCCCCh--------HHHHHHHHHHHHhhcc-----------cCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhH
Confidence 433211 1111111111000000 111233335555555555555666777788777777777
Q ss_pred HHHHHHHHHHHhc--CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 494 KAAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 494 ~~A~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
+.++...+..... -......+...|.++.++|+.++|...|++++.+.++.
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 8888877766554 22344566778999999999999999999999998876
No 411
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.77 E-value=77 Score=31.81 Aligned_cols=171 Identities=9% Similarity=-0.016 Sum_probs=92.0
Q ss_pred HHHHHHHcCCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHh---c---------------------------CCCc-
Q 004243 465 VINQMLINDPGKSFL---RFRQSLLLLRLNCQKAAMRCLRLARN---H---------------------------SSSE- 510 (766)
Q Consensus 465 ~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~---~---------------------------~p~~- 510 (766)
.|++..+.-|+.... -+..|.++...++|.+....+..+-+ . +|..
T Consensus 43 ~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~Y 122 (449)
T COG3014 43 AYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIY 122 (449)
T ss_pred HHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhH
Confidence 355555555544332 23457777777887776666554321 1 1111
Q ss_pred --hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhH
Q 004243 511 --HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQAL 588 (766)
Q Consensus 511 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 588 (766)
....+.+|.-|+..++++.|+-.|+++......- ...+.++++.-++-+.....-
T Consensus 123 E~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~A-----------------------Ke~~~~ei~ka~~e~ds~k~~ 179 (449)
T COG3014 123 EGVLINYYKALNYMLLNDSAKARVEFNRANERQRRA-----------------------KEFYYEEVQKAIKEIDSSKHN 179 (449)
T ss_pred HHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHhccCC
Confidence 1234667888999999999999999988632211 112222222111111111111
Q ss_pred HhhHHHHH-----HhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh
Q 004243 589 NNLGSIYV-----ECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (766)
Q Consensus 589 ~~lg~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 658 (766)
.+++.... -...|+.=...|+.--.+.+|.+-+..|..+...|++.++...+.+..-+.|+........+
T Consensus 180 ~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~ 254 (449)
T COG3014 180 INMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYL 254 (449)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhc
Confidence 11111111 11122222333333333346667777788888888899999999998888888666555554
No 412
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.66 E-value=84 Score=30.74 Aligned_cols=266 Identities=12% Similarity=0.025 Sum_probs=132.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch--HHHHHH
Q 004243 481 FRQSLLLLRLNCQKAAMRCLRLARNHSS--------SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLK 550 (766)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~a~~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~ 550 (766)
..+|.-..+.+++++|+..|.+.+...- ....+...++.+|...|++..-.+.....-..-.++ .-....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4566777788999999999999887622 124467788999999998764333322211110010 000011
Q ss_pred HHHHHhc-CCCCCChHHHHHHHHHHHhchhhccc---cchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----C----ChH
Q 004243 551 AYILADT-NLDPESSTYVIQLLEEALRCPSDGLR---KGQALNNLGSIYVECGKLDQAENCYINALDI----K----HTR 618 (766)
Q Consensus 551 ~~~l~~~-~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~----~~~ 618 (766)
...+... ...+......+.-....+++..+--+ ....-..+..++.+.|+|.+|+....-.+.. + -..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 1111111 11112111112222222222211111 1244466788899999999999988766543 2 235
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhc-----cCCHHHHHHH--h----hhcCHHHHHHHHHHHHhcCC---CCchhH
Q 004243 619 AHQGLARVYYLKNELKAAYDEMTKLLEKA-----QYSASAFEKR--S----EYSDREMAKNDLNMATQLDP---LRTYPY 684 (766)
Q Consensus 619 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~--~----~~~~~~~A~~~~~~al~~~p---~~~~~~ 684 (766)
.+..-..+|....+..++...+..+-... |....+-..+ | .-.++.-|-.+|-.+++-.. .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 67777888888888877777666554321 2221111111 1 23567788888877775432 222222
Q ss_pred HHHHHHH---HhCCCHHHHHHHHH--HHHhc-CCCh-HHHHHHHHHHHH--cCCHHHHHHHHHHHHccCCC
Q 004243 685 RYRAAVL---MDDQKEVEAVEELS--KAIAF-KPDL-QMLHLRAAFYES--IGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 685 ~~la~~~---~~~g~~~~A~~~~~--~al~~-~p~~-~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~ 746 (766)
..+-..+ ...+..++--..++ ..++. +... .+....+..+.. +.++..|++.|+.-+.-+|-
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 2221111 11233333222221 11221 1111 222233444432 35688888888877766553
No 413
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=75.52 E-value=94 Score=31.29 Aligned_cols=58 Identities=10% Similarity=-0.129 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCchhhHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004243 481 FRQSLLLLRLNCQKAAMRCLRLARN----HS--SSEHERLVYEGWILYDTGHREEALSRAEKSI 538 (766)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~a~~----~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (766)
..+..+|...++|.+|+......+. .+ +.-.+++..-..+|+...+..+|...+..|-
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsAR 195 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSAR 195 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHH
Confidence 4677888899999999887764432 22 2225566677788888888888877776554
No 414
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.37 E-value=11 Score=37.69 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCChHHHHHHHHHHHH
Q 004243 666 AKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF-KPDLQMLHLRAAFYES 726 (766)
Q Consensus 666 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~la~~~~~ 726 (766)
|..+|.+|+.+.|.+..+|+.+|.+....|+.-.|+-+|-+++-. .|-..+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 567888888899999999999999999899999999888888765 4444444466666555
No 415
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.18 E-value=11 Score=36.55 Aligned_cols=58 Identities=22% Similarity=0.172 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 684 YRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 684 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
+...+..|...|.+.+|+++.+++++++|-+ ..+..+-.++...||--.|++.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3456678889999999999999999999987 455578888999999888888887653
No 416
>PRK11619 lytic murein transglycosylase; Provisional
Probab=74.93 E-value=1.6e+02 Score=33.56 Aligned_cols=135 Identities=11% Similarity=0.003 Sum_probs=82.7
Q ss_pred HHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh--hhcCH---HHH-H
Q 004243 596 VECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS--EYSDR---EMA-K 667 (766)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~--~~~~~---~~A-~ 667 (766)
...++++.+..++...-.. ......+-+|+++...|+.++|...|+++.. +.+ .|-.++ .+|.. ... .
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~~Lg~~~~~~~~~~ 398 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQRLGEEYPLKIDKA 398 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHHHcCCCCCCCCCCC
Confidence 3566776666666553222 3456778888888888888888888888743 222 222222 22211 000 0
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 668 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 668 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (766)
..-...+. .......+..+...|+..+|...+..++.. .+......++.+....|.++.|+....++
T Consensus 399 ~~~~~~~~-----~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 399 PKPDSALT-----QGPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred Cchhhhhc-----cChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00000011 123456777888899999999999888775 45556667788888889888888766554
No 417
>PF12854 PPR_1: PPR repeat
Probab=74.93 E-value=7.9 Score=23.97 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=17.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004243 711 KPDLQMLHLRAAFYESIGDLTSAIRDSQA 739 (766)
Q Consensus 711 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~ 739 (766)
.|+...+..+-..+.+.|+.++|.+.+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45555555566666666666666666654
No 418
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=74.25 E-value=58 Score=31.12 Aligned_cols=47 Identities=15% Similarity=0.016 Sum_probs=36.4
Q ss_pred HHH-HHHHHHH---------HcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhh
Q 004243 716 MLH-LRAAFYE---------SIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 716 ~~~-~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
-++ ..|..+. ..++...|+.++++|++++|+ ..+...++++++.++.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhh
Confidence 344 5577663 446788999999999999987 6777888888887764
No 419
>PF13041 PPR_2: PPR repeat family
Probab=73.69 E-value=13 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCChHHHH
Q 004243 681 TYPYRYRAAVLMDDQKEVEAVEELSKAIAF--KPDLQMLH 718 (766)
Q Consensus 681 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 718 (766)
...|..+-..+.+.|++++|.+.|++..+. .|+...+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 345666777778888888888888887655 56555554
No 420
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=72.27 E-value=13 Score=37.13 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 004243 700 AVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 700 A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 760 (766)
|..+|.+|+.+.|++ ..++.+|.++...|+.-.|+-+|-+++-...-++.+...+..+-..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 788999999999999 5566899999999999999999999998765568887777766555
No 421
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=72.06 E-value=15 Score=37.65 Aligned_cols=58 Identities=14% Similarity=0.016 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004243 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 538 (766)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (766)
..+..+|+++++.+.|+...-+.+..+|..+.-+...+.+...+.+|.+|.+.+--+.
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888888888888888877665443
No 422
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=71.54 E-value=24 Score=41.89 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=94.4
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHcc-------CCh---HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHH
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDI-------KHT---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 654 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 654 (766)
+..+..++.++...|++++|+..-.++.-+ +++ ..+.+++...+..++...|...+.++....--.
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls---- 1048 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS---- 1048 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc----
Confidence 467889999999999999999988877655 333 356667766667777777777766665431000
Q ss_pred HHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-----Ch----HHHHHHHHHHH
Q 004243 655 EKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP-----DL----QMLHLRAAFYE 725 (766)
Q Consensus 655 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~----~~~~~la~~~~ 725 (766)
.-+..|.-+....+++.++...++++.|+++.+.|+..+- .. ..+..++.+..
T Consensus 1049 ------------------~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1049 ------------------SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred ------------------cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence 0013455556667888888888999999999999987532 22 12336678888
Q ss_pred HcCCHHHHHHHHHHHHcc
Q 004243 726 SIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 726 ~~g~~~~A~~~~~~al~~ 743 (766)
..+++..|....+....+
T Consensus 1111 s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1111 SMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhHHHHHHHHHHhhHHHH
Confidence 888888877777766554
No 423
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.80 E-value=2.2e+02 Score=33.37 Aligned_cols=121 Identities=12% Similarity=-0.000 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCchhhHHHHHHHHHHCCCH--HHHHHHHHHHHccccchHHHHHHHH
Q 004243 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHS----SSEHERLVYEGWILYDTGHR--EEALSRAEKSISIERTFEAFFLKAY 552 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~~ 552 (766)
-+..++.+|...|++++|++.+.....-. +...+.+-..-..+...+.. +-..++-.-.+..+|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~-------- 577 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA-------- 577 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh--------
Confidence 36678899999999999999999887743 22333333333344444443 44444444444444443
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhchhhccc--cchhHHhhHHHHHHhCCHHHHHHHHHHHHccC---ChHHHHHHHHHH
Q 004243 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLR--KGQALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVY 627 (766)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~la~~~ 627 (766)
.++.+..-.. ....-.....-|......+-++.+++.++... ....+..++..|
T Consensus 578 ---------------------gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly 636 (877)
T KOG2063|consen 578 ---------------------GIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY 636 (877)
T ss_pred ---------------------heeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence 2222222000 01111112223456677888888888888762 333444454444
Q ss_pred H
Q 004243 628 Y 628 (766)
Q Consensus 628 ~ 628 (766)
.
T Consensus 637 ~ 637 (877)
T KOG2063|consen 637 L 637 (877)
T ss_pred H
Confidence 3
No 424
>PF12854 PPR_1: PPR repeat
Probab=70.64 E-value=10 Score=23.52 Aligned_cols=29 Identities=10% Similarity=-0.128 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004243 382 KLSVDCLELRAWLFIAADDYESALRDTLA 410 (766)
Q Consensus 382 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 410 (766)
.|+...|..+...+.+.|+.++|.+.|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45555555566666777777777766654
No 425
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.20 E-value=22 Score=33.15 Aligned_cols=55 Identities=13% Similarity=0.017 Sum_probs=35.5
Q ss_pred hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 660 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
-+...+|+...+.-++.+|.+......+=.++.-.|+|++|..-++-+-++.|+.
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3455666666666666666666666666666666666666666666666666655
No 426
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=70.05 E-value=1.5e+02 Score=31.26 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHH--HHHHHH---------hcCCCh----HHHHH--HHHHHH
Q 004243 663 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE--ELSKAI---------AFKPDL----QMLHL--RAAFYE 725 (766)
Q Consensus 663 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al---------~~~p~~----~~~~~--la~~~~ 725 (766)
.++|+..++.+++..|.+.......- .+-...|.+|+. .+.+.+ .+.|-. ....- =|..++
T Consensus 396 dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 57788888888877776643332211 111122333322 111211 122322 22222 267778
Q ss_pred HcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 004243 726 SIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 726 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 760 (766)
.+|+|.++.-+-.=..+++| ++.++.+++-....
T Consensus 474 sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e 507 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME 507 (549)
T ss_pred hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH
Confidence 89999999999999999999 79998888765443
No 427
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=70.00 E-value=6.5 Score=32.53 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHhhChHHHHHHHHHHHHhh
Q 004243 158 IEDALILIDYGLEERATLLVASCLQVLLRE 187 (766)
Q Consensus 158 ~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~ 187 (766)
.+++..++.+|..++++.|.+.|.+++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 789999999999999999999999999876
No 428
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.62 E-value=18 Score=35.32 Aligned_cols=61 Identities=13% Similarity=-0.045 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
.....+..|...|.+.+|++..+++++.+|-+...+..+-.++...|+--.|.+.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445677888999999999999999999999999999999999999998888888876543
No 429
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.38 E-value=10 Score=22.56 Aligned_cols=29 Identities=10% Similarity=-0.136 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHhcCCCchhhHHHHHH
Q 004243 491 NCQKAAMRCLRLARNHSSSEHERLVYEGW 519 (766)
Q Consensus 491 g~~~~A~~~~~~a~~~~p~~~~~~~~lg~ 519 (766)
|+.+.|...|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45666777777777777766666665544
No 430
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.51 E-value=8.9 Score=39.96 Aligned_cols=60 Identities=10% Similarity=0.025 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH-------H-hcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLA-------R-NHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a-------~-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
...+..++.-+|||..|++.++.. . ...+-....++..|.+|+.+++|.+|++.|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999998742 1 11233466789999999999999999999998874
No 431
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=67.93 E-value=37 Score=29.64 Aligned_cols=49 Identities=22% Similarity=0.135 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhh
Q 004243 715 QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
......+.-....|++.-|.+....++..+|++.++..+.+.+.+.+..
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3344455555666777777777777777777777777776666665543
No 432
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.98 E-value=1.4e+02 Score=29.38 Aligned_cols=27 Identities=19% Similarity=0.016 Sum_probs=16.3
Q ss_pred CchhhHHHHHHHHHHCCCHHHHHHHHH
Q 004243 509 SEHERLVYEGWILYDTGHREEALSRAE 535 (766)
Q Consensus 509 ~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (766)
.+++.+..+|..+.+.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 346666677777777777777766663
No 433
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.96 E-value=45 Score=31.22 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=54.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 485 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.-+++.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 346677889999999999999999999999999999999999999999999999999987
No 434
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.43 E-value=34 Score=25.92 Aligned_cols=30 Identities=10% Similarity=-0.010 Sum_probs=22.8
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
+..+...+.-+=+.|++.+|+.+|+++++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445556667777788999988888888875
No 435
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.31 E-value=2e+02 Score=30.89 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=41.9
Q ss_pred HHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHH
Q 004243 626 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELS 705 (766)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 705 (766)
-|....++.+|++.+...++.+..+.++..+.. +.++.-. .+-.+.+-|....++-..-.++.+++..|+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i---------~~lRd~y-~~~~~~e~yl~~s~i~~~~rnf~~~l~dFe 283 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKDVWARKEII---------ENLRDKY-RGHSQLEEYLKISNISQSGRNFFEALNDFE 283 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchhhhHHHHHH---------HHHHHHh-ccchhHHHHHHhcchhhccccHHHHHHHHH
Confidence 344455677777777777777666655543332 1111100 001112233333444444577888888888
Q ss_pred HHHhcCCCh
Q 004243 706 KAIAFKPDL 714 (766)
Q Consensus 706 ~al~~~p~~ 714 (766)
+.+..+..+
T Consensus 284 k~m~f~eGn 292 (711)
T COG1747 284 KLMHFDEGN 292 (711)
T ss_pred HHheeccCc
Confidence 887765544
No 436
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=65.25 E-value=3e+02 Score=32.83 Aligned_cols=84 Identities=14% Similarity=0.032 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCCCc---hHHHHHHHHHHHc----C---CHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHH
Q 004243 337 KIVDLNYASELDPTLS---FPYKYRAVAKMEE----G---QIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALR 406 (766)
Q Consensus 337 A~~~~~~al~~~p~~~---~~~~~~a~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~ 406 (766)
|+..|++.-...|... ++.+..|..+..+ | .+++|+..|++.-..-..|-.|.-.|.+|..+|++++-++
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (932)
T PRK13184 494 ALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIK 573 (932)
T ss_pred HHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHH
Confidence 8888888888888764 4667777666543 2 5888999999886544455566669999999999999999
Q ss_pred HHHHHHhccCCccc
Q 004243 407 DTLALLALESNYMM 420 (766)
Q Consensus 407 ~~~~al~~~p~~~~ 420 (766)
.|.-+++..|+++.
T Consensus 574 ~~~~~~~~~~~~~~ 587 (932)
T PRK13184 574 SLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHhcCCCCc
Confidence 99999999999984
No 437
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.89 E-value=2e+02 Score=30.79 Aligned_cols=85 Identities=9% Similarity=-0.132 Sum_probs=55.3
Q ss_pred CCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHH--HcCCHHHHHHHHHHHHccCCCChhHHHHH
Q 004243 678 PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH-LRAAFYE--SIGDLTSAIRDSQAALCLDPNHMETLDLY 754 (766)
Q Consensus 678 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l 754 (766)
|+....-..+-..+.+.|-+.+|...|.+...+.|-+-.++ ....+-. ..-+...+..+|+.++.-...+++.|..+
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 44444445555667778888888888888877766665544 2221111 12247788888888888877888888777
Q ss_pred HHHHHhhh
Q 004243 755 NRARDQAS 762 (766)
Q Consensus 755 ~~~~~~~~ 762 (766)
-..+..+.
T Consensus 537 ~~~e~~~g 544 (568)
T KOG2396|consen 537 MKEELPLG 544 (568)
T ss_pred HHhhccCC
Confidence 66555443
No 438
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.59 E-value=1.5e+02 Score=29.19 Aligned_cols=65 Identities=18% Similarity=0.033 Sum_probs=42.5
Q ss_pred CCchhHHHHHHHHHhCCCHHHHHHHHHHH-----------H-----hcCCChHHHH-HHH-HHHHHcCCHHHHHHHHHHH
Q 004243 679 LRTYPYRYRAAVLMDDQKEVEAVEELSKA-----------I-----AFKPDLQMLH-LRA-AFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 679 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l-----~~~p~~~~~~-~la-~~~~~~g~~~~A~~~~~~a 740 (766)
.++..+..+|..+.+.|++.+|...|-.. + .-.|....++ .++ .-|...|+...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56899999999999999999998876321 1 1244443333 443 4455679999999888776
Q ss_pred Hcc
Q 004243 741 LCL 743 (766)
Q Consensus 741 l~~ 743 (766)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 439
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=63.53 E-value=27 Score=39.04 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 681 TYPYRYRAAVLMD--DQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 681 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
.....+.+.+++. .|+|.+++...+-++...|.. ..+.-++.+|...+.++-|++...-....+|.++++.....++
T Consensus 91 a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 91 ATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred hhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 3444455555544 478888888888888888887 5566778888888888888888888888889888888777777
Q ss_pred HHhh
Q 004243 758 RDQA 761 (766)
Q Consensus 758 ~~~~ 761 (766)
+..+
T Consensus 171 k~ll 174 (748)
T KOG4151|consen 171 KGLL 174 (748)
T ss_pred HHHH
Confidence 7665
No 440
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.46 E-value=2.7e+02 Score=31.74 Aligned_cols=309 Identities=8% Similarity=-0.061 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHH
Q 004243 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 431 (766)
Q Consensus 353 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 431 (766)
...+..+.-....|++..+.....+. .-.| ...++ ...+....+.. ....+...++..|+.+. ...+.
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~p--L~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~------~~~Lr 102 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTL-KDYP--LYPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPP------ARSLQ 102 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc-cCCC--cHhHHHHHHHHhccccC--CHHHHHHHHHHCCCCch------HHHHH
Confidence 34566677778888888876665544 2233 11121 22222222211 11244555666787773 22222
Q ss_pred hHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 004243 432 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 511 (766)
Q Consensus 432 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 511 (766)
.......+.-..-. .+.+.....|.+....+..+......|+.++|.....++.......+
T Consensus 103 ~~~l~~La~~~~w~-------------------~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p 163 (644)
T PRK11619 103 SRFVNELARREDWR-------------------GLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLP 163 (644)
T ss_pred HHHHHHHHHccCHH-------------------HHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Confidence 22222222111110 11222223477777778888888888988888777777655544444
Q ss_pred hhHHHHHHHHH------------------HCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 004243 512 ERLVYEGWILY------------------DTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEE 573 (766)
Q Consensus 512 ~~~~~lg~~~~------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 573 (766)
.....+-..+. ..|+...|....... .++...+ +..+.... .+...
T Consensus 164 ~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l---~~~~~~~---a~a~~al~----------~~p~~ 227 (644)
T PRK11619 164 NACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL---PADYQTI---ASALIKLQ----------NDPNT 227 (644)
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc---ChhHHHH---HHHHHHHH----------HCHHH
Confidence 44333333333 334433333222211 1111100 00000000 01111
Q ss_pred HHhchhhccccc---hhHHhhHHHHHHhCCHHHHHHHHHHHHccC---C---hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004243 574 ALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK---H---TRAHQGLARVYYLKNELKAAYDEMTKLL 644 (766)
Q Consensus 574 A~~~~~~~l~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~---~~~~~~la~~~~~~g~~~~A~~~~~~~l 644 (766)
+...... ..+. .....++..-....+.+.|...+.+..... . ..++..+|.-....+...+|...+..+.
T Consensus 228 ~~~~~~~-~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~ 306 (644)
T PRK11619 228 VETFART-TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI 306 (644)
T ss_pred HHHHhhc-cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 1111111 1011 112233444445666777777777653331 1 1233444433333322455666666544
Q ss_pred HhccCCH--HHHHHHh-hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004243 645 EKAQYSA--SAFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 645 ~~~p~~~--~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 708 (766)
....+.. +.....+ ..++.+.+...+...-......+...+.+|..+...|+.++|...|+++.
T Consensus 307 ~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 307 MRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred cccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3221111 1111111 44566665555555333233445667777777777777777777777764
No 441
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.00 E-value=29 Score=32.37 Aligned_cols=50 Identities=20% Similarity=0.108 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 697 EVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 697 ~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 746 (766)
.+..++..++.+...|+...+..++.++...|+.++|....+++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34555666777888898888888999999999999999999999999994
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.84 E-value=22 Score=37.13 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCC----------CHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004243 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL----------SVDCLELRAWLFIAADDYESALRDTLALLA 413 (766)
Q Consensus 354 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 413 (766)
+...+.+++.-+|+|..|++.++.+- ++. ....+|..|-+|+.+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~id-l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENID-LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccC-cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788899999999999887541 121 122366699999999999999999998875
No 443
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.26 E-value=2.5e+02 Score=32.20 Aligned_cols=237 Identities=14% Similarity=0.060 Sum_probs=113.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCc-hhhHHHHHHHHHHCCCHHHHHHHHHHHHcc-ccch-HHHHHHHHHHHhcCCCC
Q 004243 485 LLLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYDTGHREEALSRAEKSISI-ERTF-EAFFLKAYILADTNLDP 561 (766)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~~~~~l~~~~~~~ 561 (766)
..+.+..-|+-|+...+.- ..+++. ...+...|.-++..|++++|...|-+.+.. +|.. -..+ +++
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf----------Lda 410 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF----------LDA 410 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh----------cCH
Confidence 4455666777777765432 222222 456777899999999999999999888753 3332 0000 000
Q ss_pred CChHHHHHHHHHHHhchhhc----cccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh--HHHHHHHHHHHHhccHHH
Q 004243 562 ESSTYVIQLLEEALRCPSDG----LRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNELKA 635 (766)
Q Consensus 562 ~~~~~~~~~~~~A~~~~~~~----l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~la~~~~~~g~~~~ 635 (766)
. +..+-..+++.. +....--..|-.+|.++++.++-.+..++.- .+.. +.- ..-.++.+.+-.++
T Consensus 411 q-------~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e-~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 411 Q-------RIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVE-TALEILRKSNYLDE 481 (933)
T ss_pred H-------HHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHH-HHHHHHHHhChHHH
Confidence 0 111111111111 1112333456677888887776555444332 1000 000 01112222333333
Q ss_pred HHHHHHHHHHhccCCHHHHHHHh-hhcCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhCCCHHHHHHHHHHHHhc-C-
Q 004243 636 AYDEMTKLLEKAQYSASAFEKRS-EYSDREMAKNDLNMATQLDPLR-TYPYRYRAAVLMDDQKEVEAVEELSKAIAF-K- 711 (766)
Q Consensus 636 A~~~~~~~l~~~p~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~- 711 (766)
|.-.-.+ ...+.+++..+- ..+++++|+.++.. +.|.. .......|..++. ...++-...+-+.+.. .
T Consensus 482 a~~LA~k----~~~he~vl~ille~~~ny~eAl~yi~s---lp~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~ 553 (933)
T KOG2114|consen 482 AELLATK----FKKHEWVLDILLEDLHNYEEALRYISS---LPISELLRTLNKYGKILLE-HDPEETMKILIELITELNS 553 (933)
T ss_pred HHHHHHH----hccCHHHHHHHHHHhcCHHHHHHHHhc---CCHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCC
Confidence 3332222 222344433333 56788888888775 33332 3444556666654 3445555554444433 2
Q ss_pred CCh-HHHH----HHHHHHHHcCCHHHHHHHHHHHHccCCCChh
Q 004243 712 PDL-QMLH----LRAAFYESIGDLTSAIRDSQAALCLDPNHME 749 (766)
Q Consensus 712 p~~-~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 749 (766)
+.. .... -.-.+..-.+++..-...++...+..|+.++
T Consensus 554 ~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 554 QGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred CCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 111 1111 1112223345666666666666667666655
No 444
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=60.09 E-value=20 Score=36.04 Aligned_cols=117 Identities=10% Similarity=-0.037 Sum_probs=66.4
Q ss_pred HHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCcH--H
Q 004243 260 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGRE--K 337 (766)
Q Consensus 260 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--A 337 (766)
-+.|...++.++|+.|..-|.+++..-...+... ..+..++ ....+..........+...+..+.+ |
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~----------~~e~~~~-~~~~~~~r~~~~~n~~~~~lk~~~~~~a 294 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSEQSRDR----------EKEQENR-IPPLRELRFSIRRNLAAVGLKVKGRGGA 294 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhccccccc----------ccccccc-cccccccccccccchHHhcccccCCCcc
Confidence 3568888999999999999999876522111000 0000000 0000000011111122333333332 5
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHH
Q 004243 338 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC 387 (766)
Q Consensus 338 ~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 387 (766)
+..-..+++.++....+++.++..+....++++|++.+..+....|+...
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 55555566677778888888888888888888888888888877775443
No 445
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.79 E-value=67 Score=34.92 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=25.7
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
..-|..||.+....+++..|.++|.++...
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 345889999999999999999999988665
No 446
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=58.97 E-value=1.2e+02 Score=26.23 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=35.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHH
Q 004243 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 535 (766)
Q Consensus 486 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (766)
.+...+.....+..++..+..++.++..+..+..+|.+.+ ..+.++.++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 3445577888899999888888777888888888887653 445555555
No 447
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=58.50 E-value=2.3e+02 Score=29.42 Aligned_cols=66 Identities=15% Similarity=-0.067 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--cCC--CchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 479 LRFRQSLLLLRLNCQKAAMRCLRLARN--HSS--SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
....+-..|...+.|+.|-....+..- ... ..+..++++|.+..-+++|..|.++|-+++...|.+
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 344556677888889999888776541 111 235567889999999999999999999999999976
No 448
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.56 E-value=2.3e+02 Score=29.80 Aligned_cols=61 Identities=26% Similarity=0.223 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchh--hHHH--HHHHHHHCCCHHHHHHHHHHHHcc
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE--RLVY--EGWILYDTGHREEALSRAEKSISI 540 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~--~~~~--lg~~~~~~g~~~~A~~~~~~al~~ 540 (766)
....+..++..++|..|...+......-|.... .+.. .|.-++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667788999999999999998875344333 3333 355667889999999999998764
No 449
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.45 E-value=42 Score=32.75 Aligned_cols=61 Identities=16% Similarity=0.059 Sum_probs=46.5
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 681 TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-------QMLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 681 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
..+...+|.-|+..|++++|++.|+.+....... ..+..+..|+...|+.+..+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4556689999999999999999999996553221 233467899999999998887765544
No 450
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.50 E-value=40 Score=37.47 Aligned_cols=56 Identities=21% Similarity=0.170 Sum_probs=27.9
Q ss_pred hhcCHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhC---------CCHHHHHHHHHHHHhcCCCh
Q 004243 659 EYSDREMAKNDLNMATQLD-PLRTYPYRYRAAVLMDD---------QKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 659 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 714 (766)
.-|+.++|+...-.+++.. |..+..+..-|++|... +..+.|+++|+++.+..|..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 3455555555555544332 33344555555554322 34455666666666655543
No 451
>PF13041 PPR_2: PPR repeat family
Probab=56.03 E-value=28 Score=23.69 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 712 PDLQMLHLRAAFYESIGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 712 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (766)
|+...+..+-..+.+.|++++|.+.|++..+..
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 555667778889999999999999999998764
No 452
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.82 E-value=1.7e+02 Score=28.86 Aligned_cols=66 Identities=11% Similarity=0.118 Sum_probs=49.3
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHcc----C-ChH---HHHHHHHHHHHhccHHHHHHHHHHHHHhccCC
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDI----K-HTR---AHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~-~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 650 (766)
.+++.++|..|.+.++.+.+.++..+.++. + ..+ ....+|.+|..+.-.++.++..+.+++...+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 589999999999999999999998877665 1 223 34556777766666777777777777765543
No 453
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.68 E-value=51 Score=33.96 Aligned_cols=101 Identities=23% Similarity=0.190 Sum_probs=68.8
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhh
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDI-----KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEY 660 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 660 (766)
.++..+|.-|...|+++.|++.|-++-.. .....+.++-.+-...|+|..-..+..++.+. |+ .
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~---~------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST-PD---A------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-ch---h-------
Confidence 56788999999999999999999996665 23467888888888899988777776666543 10 0
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 708 (766)
...+-..-| +.+...-|.+.+..++|..|.++|-.+.
T Consensus 220 ---------~~~~~q~v~--~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 ---------NENLAQEVP--AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred ---------hhhHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 000111112 2344555556666678888888876663
No 454
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=55.52 E-value=19 Score=21.09 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Q 004243 620 HQGLARVYYLKNELKAAYDEMTKLL 644 (766)
Q Consensus 620 ~~~la~~~~~~g~~~~A~~~~~~~l 644 (766)
|..+-..|.+.|++++|.+.+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3344444455555555555554443
No 455
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.46 E-value=2.7e+02 Score=29.25 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.2
Q ss_pred HHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 258 ALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 258 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
-....+..+++.++|..|...|+.....
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445677888999999999999998874
No 456
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=54.93 E-value=2.7e+02 Score=29.68 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=18.5
Q ss_pred HhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 589 NNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
..-|.-|...|+...|..+|.++...
T Consensus 374 vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 374 VLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33456677778888888888777654
No 457
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.73 E-value=72 Score=31.12 Aligned_cols=76 Identities=17% Similarity=0.080 Sum_probs=53.1
Q ss_pred HHHHHHHHhchhhcccc---chhHHhhHHHHHHhCCHHHHHHHHHHHHcc--C------ChHHHHHHHHHHHHhccHHHH
Q 004243 568 IQLLEEALRCPSDGLRK---GQALNNLGSIYVECGKLDQAENCYINALDI--K------HTRAHQGLARVYYLKNELKAA 636 (766)
Q Consensus 568 ~~~~~~A~~~~~~~l~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~------~~~~~~~la~~~~~~g~~~~A 636 (766)
++.++.|++.|.+.-.. ......+|..|...|++++|.+.|+.+... . .......+..++...|+.+..
T Consensus 158 I~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~ 237 (247)
T PF11817_consen 158 IELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDY 237 (247)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 44555666655554332 356678999999999999999999999654 1 124667777888888888776
Q ss_pred HHHHHHH
Q 004243 637 YDEMTKL 643 (766)
Q Consensus 637 ~~~~~~~ 643 (766)
+...-++
T Consensus 238 l~~~leL 244 (247)
T PF11817_consen 238 LTTSLEL 244 (247)
T ss_pred HHHHHHH
Confidence 6654443
No 458
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.39 E-value=1.1e+02 Score=30.69 Aligned_cols=102 Identities=9% Similarity=-0.060 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhHHhhcccHHHHHHHHHHHHhc--------CccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHH
Q 004243 254 QRMLALHQLGCVMFEREEYKDACYYFEAAADA--------GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMY 325 (766)
Q Consensus 254 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (766)
...+++.+.|..|.+.||-+.|.+.+.+-.+. +.......++..+....-..+..+++..++.+...+-.-.
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN 181 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN 181 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 44677888999999999999999998886654 2222333555556555555666665555555222111111
Q ss_pred HHHHHhccCcHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 326 QERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 382 (766)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 382 (766)
..-...|.-.+...++.+|-..|-..+..-
T Consensus 182 ---------------------------RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 182 ---------------------------RLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred ---------------------------hHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 111223555566677888888777776433
No 459
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.76 E-value=4.7e+02 Score=31.48 Aligned_cols=170 Identities=15% Similarity=0.068 Sum_probs=90.9
Q ss_pred HHHHHhhhHHhhcccHHHHHHHHHHHHhc-CccccHhHHHHHHH------Hhcc-------HHHHHHHHhhhccCCCchh
Q 004243 257 LALHQLGCVMFEREEYKDACYYFEAAADA-GHIYSLAGLARAKY------KVGQ-------QYSAYKLINSIISEHKPTG 322 (766)
Q Consensus 257 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~l~~~~~------~~~~-------a~~~~~~~~~~~~~~~~~~ 322 (766)
..-+.+|..|+..|+.-+|+.+|.+|... +.++.+-.+..... ..|+ +...|.++..+..
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle------ 994 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLE------ 994 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHH------
Confidence 34577899999999999999999999875 22222111111100 1111 1111221111111
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhcCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH----HHHHHHHHH
Q 004243 323 WMYQERSLYNLGREKIVDLNYASELDPTL----SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DCLELRAWL 394 (766)
Q Consensus 323 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~a~~ 394 (766)
-+...+++++.-.+||+.-|++ +..+...-.-+..+|.+-+|...+-+ +|+. .++..+-.+
T Consensus 995 -------~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~----npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 995 -------EHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR----NPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred -------HhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc----CCcHHHHHHHHHHHHHH
Confidence 1222334666667777654433 33444555566777888887665443 4432 234445555
Q ss_pred HHhhhhHH------------HHHH-HHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHH
Q 004243 395 FIAADDYE------------SALR-DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI 448 (766)
Q Consensus 395 ~~~~g~~~------------~A~~-~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~ 448 (766)
++..|+++ +-.. .++.+-+..|-... ..+.++-..+...++|.+|.+.+
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~-----nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKK-----NYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccc-----cHHHHHHHHHHhhcchhHHHHHH
Confidence 55555543 2233 33444444443332 34556666778888898887666
No 460
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.77 E-value=24 Score=26.79 Aligned_cols=33 Identities=27% Similarity=0.210 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004243 662 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 662 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 709 (766)
+.++|+..+.+++..|. .|+|++|+.+|..+++
T Consensus 2 ~l~kai~Lv~~A~~eD~---------------~gny~eA~~lY~~ale 34 (75)
T cd02680 2 DLERAHFLVTQAFDEDE---------------KGNAEEAIELYTEAVE 34 (75)
T ss_pred CHHHHHHHHHHHHHhhH---------------hhhHHHHHHHHHHHHH
No 461
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=51.56 E-value=17 Score=37.93 Aligned_cols=43 Identities=12% Similarity=0.282 Sum_probs=36.0
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCcccccccc
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIF 201 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~l~ 201 (766)
+. .+||+.++..|..|..+.|.+.|.+||.+|... ..+|+.|+
T Consensus 185 ~~-~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~ 227 (521)
T KOG2075|consen 185 LA-ADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELF 227 (521)
T ss_pred hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHH
Confidence 56 899999999999999999999999999998653 34555553
No 462
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=50.76 E-value=50 Score=25.25 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=12.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHH
Q 004243 688 AAVLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 688 a~~~~~~g~~~~A~~~~~~al 708 (766)
|.-.-..|++++|+.+|.+++
T Consensus 13 Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 13 AVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 334445677777666666554
No 463
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=50.55 E-value=23 Score=28.68 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=24.0
Q ss_pred HHHHHHhhhhChHhHHHHHHHHHHhhcC
Q 004243 129 LELLSFANRFCCEEMKSACDAHLASLVG 156 (766)
Q Consensus 129 ~~~l~~a~~~~~~~l~~~c~~~l~~~~~ 156 (766)
.+++..|..|+++.|...|.+++..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~ 29 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFN 29 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999987654
No 464
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=50.25 E-value=37 Score=25.22 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=23.9
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
+..+...|...=..|+|++|+.+|.++++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445556777777889999999999999875
No 465
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.79 E-value=38 Score=25.82 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=24.2
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
.+..+...+.-.=+.|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445556677777889999999999999875
No 466
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=48.46 E-value=44 Score=19.96 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=15.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004243 684 YRYRAAVLMDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 684 ~~~la~~~~~~g~~~~A~~~~~~al~ 709 (766)
|..+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445556666666666666666543
No 467
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=47.71 E-value=52 Score=28.70 Aligned_cols=51 Identities=12% Similarity=-0.087 Sum_probs=37.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCC
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 526 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 526 (766)
..+.....+...+..|++.-|.+..+.++..+|++..+...++.++.++|.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 445566777778888888888888888888888888888888877776654
No 468
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=47.60 E-value=1.4e+02 Score=32.43 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=29.9
Q ss_pred HHHHHHHHHhc-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 337 KIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 378 (766)
Q Consensus 337 A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 378 (766)
++..|.+||.. +-.+...|..+|-.+++.+++.+|+..+..+
T Consensus 298 ~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 298 PLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 66777777654 3345677888888889999999998887766
No 469
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=47.31 E-value=36 Score=20.80 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=21.6
Q ss_pred HHHHhhhHHhhc----ccHHHHHHHHHHHHhcC
Q 004243 258 ALHQLGCVMFER----EEYKDACYYFEAAADAG 286 (766)
Q Consensus 258 ~~~~lg~~~~~~----g~~~~A~~~~~~al~~~ 286 (766)
+.+.+|..|..- .++.+|+.+|+++.+.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 556677776543 48999999999987653
No 470
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=47.12 E-value=44 Score=28.20 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHH
Q 004243 719 LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYN 755 (766)
Q Consensus 719 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 755 (766)
.+|..+...|++++|...|-+|+...|+-.+.+..+.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q 104 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQ 104 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4566666666666666666666666666544444443
No 471
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.91 E-value=27 Score=26.62 Aligned_cols=19 Identities=21% Similarity=0.036 Sum_probs=13.4
Q ss_pred HHhCCCHHHHHHHHHHHHh
Q 004243 691 LMDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 691 ~~~~g~~~~A~~~~~~al~ 709 (766)
.-+.|+|++|+.+|..+++
T Consensus 16 ~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3346888888888877764
No 472
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.73 E-value=5.1e+02 Score=29.90 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=34.7
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCH--HHHHHHHHHHHhhhhHHHHHHHHHHHHh-ccCCcc
Q 004243 361 AKMEEGQIRAAISEIDRIIVFKLSV--DCLELRAWLFIAADDYESALRDTLALLA-LESNYM 419 (766)
Q Consensus 361 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~ 419 (766)
.+.+..-|+-|+...+.- ..++.. ......|..++..|++++|...|-+.+. ++|...
T Consensus 343 iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V 403 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV 403 (933)
T ss_pred HHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH
Confidence 444555566666655432 122211 1122378888889999999999888876 444444
No 473
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.42 E-value=50 Score=30.75 Aligned_cols=52 Identities=15% Similarity=0.003 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcc
Q 004243 368 IRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (766)
Q Consensus 368 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 419 (766)
.+..++..++.++..|++..+..++.++...|+.++|.+..+++....|.+.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 3445566677777788888888888888888888888888888888888443
No 474
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.05 E-value=3e+02 Score=31.10 Aligned_cols=69 Identities=13% Similarity=0.039 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHH---------CCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Q 004243 490 LNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYD---------TGHREEALSRAEKSISIERTFEAFFLKAYILADTN 558 (766)
Q Consensus 490 ~g~~~~A~~~~~~a~~~~-p~~~~~~~~lg~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~ 558 (766)
-|+-++|+...-.+++.. |-.++.+..-|.+|.. .+..+.|+++|+++.+..|...+-.+++..+...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhh
Confidence 477888888877776654 4457777777777753 35678899999999999998733334444444333
No 475
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=45.04 E-value=2.5e+02 Score=25.71 Aligned_cols=33 Identities=15% Similarity=-0.031 Sum_probs=22.0
Q ss_pred CchhhHHHHHHHHH-HCCCHHHHHHHHHHHHccc
Q 004243 509 SEHERLVYEGWILY-DTGHREEALSRAEKSISIE 541 (766)
Q Consensus 509 ~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~ 541 (766)
..|+....+|..+. -..++++|.+.|+.--.-+
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden 65 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN 65 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45677777776654 3567888888887655433
No 476
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.99 E-value=1.3e+02 Score=22.31 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=13.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 004243 688 AAVLMDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 688 a~~~~~~g~~~~A~~~~~~al~ 709 (766)
|.-.-..|++++|+.+|.++++
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3344456777777777766543
No 477
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.63 E-value=2e+02 Score=24.54 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHhchhhccc--cchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CChHHHHHHHHHHHHhccHHHHH
Q 004243 564 STYVIQLLEEALRCPSDGLR--KGQALNNLGSIYVECGKLDQAENCYINALDI----KHTRAHQGLARVYYLKNELKAAY 637 (766)
Q Consensus 564 ~~~~~~~~~~A~~~~~~~l~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~la~~~~~~g~~~~A~ 637 (766)
.......+++++..+...-. ...-+..+=..|...-+ ++.+.|...... ..+..|...|..+...|++++|.
T Consensus 42 ~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~ 119 (126)
T PF08311_consen 42 QSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKAD 119 (126)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHH
T ss_pred hhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33334455555555544322 22333333333433333 777777766654 46678888899999999999999
Q ss_pred HHHHHHH
Q 004243 638 DEMTKLL 644 (766)
Q Consensus 638 ~~~~~~l 644 (766)
+.|+.++
T Consensus 120 ~I~~~Gi 126 (126)
T PF08311_consen 120 EIYQLGI 126 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9888764
No 478
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=43.58 E-value=54 Score=20.53 Aligned_cols=30 Identities=30% Similarity=0.581 Sum_probs=19.6
Q ss_pred HHHHHhh--hHHhhc-----ccHHHHHHHHHHHHhcC
Q 004243 257 LALHQLG--CVMFER-----EEYKDACYYFEAAADAG 286 (766)
Q Consensus 257 ~~~~~lg--~~~~~~-----g~~~~A~~~~~~al~~~ 286 (766)
.+.+.+| ..+..- .++++|+.+|++|.+.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 3556666 333322 26899999999987753
No 479
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.81 E-value=49 Score=25.32 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=22.6
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
+..+...|...=..|+|++|+.+|.++++.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555666677788999999999988875
No 480
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=42.16 E-value=76 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=23.6
Q ss_pred HHHHHHhhhhChHhHHHHHHHHHHhhcC
Q 004243 129 LELLSFANRFCCEEMKSACDAHLASLVG 156 (766)
Q Consensus 129 ~~~l~~a~~~~~~~l~~~c~~~l~~~~~ 156 (766)
.+++.+|+.|+++.|...|.+++.++..
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~ 29 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFL 29 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999977643
No 481
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.89 E-value=4.8e+02 Score=28.21 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=34.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHH--------------------HHHHcCCHHHHHHHHHHHHccCCCC
Q 004243 689 AVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAA--------------------FYESIGDLTSAIRDSQAALCLDPNH 747 (766)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~--------------------~~~~~g~~~~A~~~~~~al~~~p~~ 747 (766)
.-|....++.+|++.+...++.+..+ .+--.+.. +-..-.++-.|+..|++.+..+..+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 34555678888888888777776555 22111111 1111345677777777777766543
No 482
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=41.43 E-value=4.8e+02 Score=28.88 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHH---HhcCCChHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 004243 665 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA---IAFKPDLQMLHLRAAFYES-IGDLTSAIRDSQAA 740 (766)
Q Consensus 665 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~la~~~~~-~g~~~~A~~~~~~a 740 (766)
.-..+|+..++.+|........+...+.. ...+...++-. +.+.|..+.|...+.++.+ .++++.-.+....+
T Consensus 362 ~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~ 438 (547)
T PF14929_consen 362 VLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSA 438 (547)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHH
Confidence 33455666666666554444444433322 44455555522 3446777888877777777 56665445555555
Q ss_pred Hcc---------CCCChhHHHHHHHHHH
Q 004243 741 LCL---------DPNHMETLDLYNRARD 759 (766)
Q Consensus 741 l~~---------~p~~~~~~~~l~~~~~ 759 (766)
+++ .-.+..+|..+.+.-.
T Consensus 439 l~vlf~~LDf~~~r~n~~aW~~l~~~l~ 466 (547)
T PF14929_consen 439 LKVLFEFLDFAGWRKNIQAWKLLAKKLP 466 (547)
T ss_pred HhcchhcccccccccccHHHHHHHHHhh
Confidence 422 2234566666654443
No 483
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=41.39 E-value=65 Score=19.22 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004243 619 AHQGLARVYYLKNELKAAYDEMTKLLE 645 (766)
Q Consensus 619 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 645 (766)
.|..+..++.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555566666666666666665543
No 484
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.09 E-value=2.1e+02 Score=28.17 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhHHhhcccHHHHHHHHHHHHhc--------CccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHH
Q 004243 254 QRMLALHQLGCVMFEREEYKDACYYFEAAADA--------GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMY 325 (766)
Q Consensus 254 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (766)
..++++.++|..|.+.++.+.+.+...+.+.. +.......++.+|..+.-..+.++.+..++.+...+..-
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr- 191 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR- 191 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh-
Confidence 45778899999999999999999888877654 222233355555665555556666555554422111110
Q ss_pred HHHHHhccCcHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 326 QERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 382 (766)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 382 (766)
...-...|...+...++.+|-..+...+...
T Consensus 192 --------------------------NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 192 --------------------------NRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred --------------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 0112234666677778888888887776433
No 485
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=39.98 E-value=1.5e+02 Score=25.59 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=61.8
Q ss_pred HHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhh---hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHH
Q 004243 626 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 702 (766)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 702 (766)
.+...+.....+.+++.++..++.++..+..+.. .-+..+.+..++. .+ +..-.-..+.+..+.+-++++.-
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~~----~~-~~yd~~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDN----KS-NHYDIEKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHHh----cc-ccCCHHHHHHHHHHcCcHHHHHH
Confidence 3445577888888888888776666555555441 1233455555542 11 12222334455566666777777
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHH
Q 004243 703 ELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 756 (766)
Q Consensus 703 ~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 756 (766)
.+.+. ....... -.+....++++.|++++.+ +++++.|..+..
T Consensus 91 l~~k~----~~~~~Al--~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~ 133 (140)
T smart00299 91 LYKKD----GNFKDAI--VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLK 133 (140)
T ss_pred HHHhh----cCHHHHH--HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHH
Confidence 66653 1111111 1111223778888887776 346667665543
No 486
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.95 E-value=16 Score=31.50 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=14.2
Q ss_pred c-eEEEEcCeEEE-eehHHH
Q 004243 56 S-VTFCVRDKEIS-FVRNKI 73 (766)
Q Consensus 56 d-v~~~~~~~~~~-~h~~~l 73 (766)
| |+|.|+|++|| +||+|=
T Consensus 82 divVf~vegR~IPiVHRviK 101 (180)
T KOG3342|consen 82 DIVVFKVEGREIPIVHRVIK 101 (180)
T ss_pred cEEEEEECCccCchhHHHHH
Confidence 5 55789999999 599863
No 487
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.21 E-value=1.7e+02 Score=32.04 Aligned_cols=111 Identities=12% Similarity=-0.003 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
+....++..+..+|-.++|++ ..++...-+...-.+|+++.|.....+ .++..-|..||.+....+++
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~-------~s~D~d~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l 682 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALE-------LSTDPDQRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGEL 682 (794)
T ss_pred hhhhhHHhHhhhccchHhhhh-------cCCChhhhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccc
Confidence 345555666666665554443 333332222222255666666655443 34567788899999999999
Q ss_pred HHHHHHHHHHHhcC--------CCh-HHHH------------HH-HHHHHHcCCHHHHHHHHHHH
Q 004243 698 VEAVEELSKAIAFK--------PDL-QMLH------------LR-AAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 698 ~~A~~~~~~al~~~--------p~~-~~~~------------~l-a~~~~~~g~~~~A~~~~~~a 740 (766)
..|.++|.++.... ..+ +.+. +. -.+|...|+++++.+.+...
T Consensus 683 ~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 683 PLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 99999998885431 111 1111 11 24667778888888877654
No 488
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=38.68 E-value=4e+02 Score=26.35 Aligned_cols=79 Identities=13% Similarity=-0.029 Sum_probs=40.6
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCchhHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHH-----cCC
Q 004243 659 EYSDREMAKNDLNMATQLDPLRTYPYRYRAA-VLMDDQKEVEAVEELSKAIAFKPDL---QMLHLRAAFYES-----IGD 729 (766)
Q Consensus 659 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~la~~~~~-----~g~ 729 (766)
+++++.+++...-+-.+.-.+.|.-...+.. .|.+.|+.....+.-..-+. +|+| +.+..++.+|.. .|.
T Consensus 95 EmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~ 173 (309)
T PF07163_consen 95 EMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGH 173 (309)
T ss_pred HHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhcccc
Confidence 4555555555555544433333333333333 44556666666555544443 4444 444444444443 577
Q ss_pred HHHHHHHHH
Q 004243 730 LTSAIRDSQ 738 (766)
Q Consensus 730 ~~~A~~~~~ 738 (766)
+++|.+...
T Consensus 174 ~~eAeelv~ 182 (309)
T PF07163_consen 174 FSEAEELVV 182 (309)
T ss_pred HHHHHHHHh
Confidence 777777763
No 489
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.86 E-value=3.6e+02 Score=26.63 Aligned_cols=91 Identities=11% Similarity=-0.028 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH------HHcCCHHHHH
Q 004243 664 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDD--QKEVEAVEELSKAIAFKPDL-QMLHLRAAFY------ESIGDLTSAI 734 (766)
Q Consensus 664 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~-~~~~~la~~~------~~~g~~~~A~ 734 (766)
+.-+..+..+++-+|.+-.+|..+-.++... .++..-....++.++.+|.+ ..|..+-.+. ..-.++..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 4445556666666777766666666665544 45555566666667776666 4444221111 2223333444
Q ss_pred HHHHHHHccCCCChhHHHHH
Q 004243 735 RDSQAALCLDPNHMETLDLY 754 (766)
Q Consensus 735 ~~~~~al~~~p~~~~~~~~l 754 (766)
++-..++..++.+..+|...
T Consensus 171 eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred HhHHHHHhhCCCChHHHHHH
Confidence 55556666677777776655
No 490
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.54 E-value=4.2e+02 Score=26.21 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=18.9
Q ss_pred hhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 590 NLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
.-|.......+|.-|..+|-++++-
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hccceeeccccchhHHHHHHHHHhc
Confidence 3456667778888898888888775
No 491
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=36.87 E-value=77 Score=24.07 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=22.9
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
.+..+...|...-..|++++|+.+|.++++.
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555666667789999999999988875
No 492
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=36.81 E-value=7.2e+02 Score=28.75 Aligned_cols=285 Identities=10% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH---CCCHHHHHHHHHHHHc
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD---TGHREEALSRAEKSIS 539 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~ 539 (766)
+..+..-+.+++.+...+..+..++...|+.++-...-..+.++.|..+..|.....-... .++..++...|++++.
T Consensus 99 i~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 99 IRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Q ss_pred cccchHHHHHHHHHHHhcCC--CC-CChHHHHHHHHHHHhchhhccccc----hhHHhhHHHHHHhCCHHHHHHHHHHHH
Q 004243 540 IERTFEAFFLKAYILADTNL--DP-ESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINAL 612 (766)
Q Consensus 540 ~~p~~~~~~~~~~~l~~~~~--~~-~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al 612 (766)
-.-.-..|...+.-+...+- .+ +........+++|+....--+..+ ..+...-..|...-..++-+..+...+
T Consensus 179 dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el 258 (881)
T KOG0128|consen 179 DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVREL 258 (881)
T ss_pred ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred ccCChHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 004243 613 DIKHTRAHQGLARVYYLK--NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAV 690 (766)
Q Consensus 613 ~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 690 (766)
... .+....-...+... ..++....-++.+++. ..+-+..+++.++..|..-.-|..+-..
T Consensus 259 ~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~----------------l~~~~~~~e~~~q~~~~~~q~~~~yidf 321 (881)
T KOG0128|consen 259 KQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKN----------------LAKILFKFERLVQKEPIKDQEWMSYIDF 321 (881)
T ss_pred hcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHH----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCChHHHH--HHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhhh
Q 004243 691 LMDDQKEVEAVEELSKAIAFKPDLQMLH--LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQ 764 (766)
Q Consensus 691 ~~~~g~~~~A~~~~~~al~~~p~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 764 (766)
-...|...--...+++++.-.+.....+ .-...-..++-.+.+...+.+++...|-..+.+....-+..+....
T Consensus 322 e~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~ 397 (881)
T KOG0128|consen 322 EKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREE 397 (881)
T ss_pred HHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcc
No 493
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.65 E-value=73 Score=19.55 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHccCCCChhHHHHHHH
Q 004243 729 DLTSAIRDSQAALCLDPNHMETLDLYNR 756 (766)
Q Consensus 729 ~~~~A~~~~~~al~~~p~~~~~~~~l~~ 756 (766)
.++.|...|++.+...|+ +..|...++
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 355666666666666654 444444443
No 494
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.64 E-value=4.3e+02 Score=30.64 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=33.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004243 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 538 (766)
Q Consensus 488 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (766)
+..|+.+.|++...+ -++++.|..+|.....+|+.+-|...|++.-
T Consensus 654 Le~gnle~ale~akk-----ldd~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKK-----LDDKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred hhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 345777777766544 3567788888888888888888888777654
No 495
>PHA02713 hypothetical protein; Provisional
Probab=36.41 E-value=39 Score=37.70 Aligned_cols=34 Identities=9% Similarity=0.016 Sum_probs=32.0
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhh
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRELP 189 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~ 189 (766)
|+ .+|+..++..|..++.+.|++.|.+|+.+++.
T Consensus 91 i~-~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~ 124 (557)
T PHA02713 91 IS-SMNVIDVLKCADYLLIDDLVTDCESYIKDYTN 124 (557)
T ss_pred CC-HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC
Confidence 77 99999999999999999999999999988775
No 496
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=36.11 E-value=77 Score=24.28 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=30.9
Q ss_pred HHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhh
Q 004243 149 AHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELP 189 (766)
Q Consensus 149 ~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~ 189 (766)
+|+ .++ .+..+.++..|...+.+.|.+.|...|...+.
T Consensus 7 ~F~--~~~-~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 7 EFL--DVD-NDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp HHT---S--HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred HHH--HcC-HHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 455 457 88999999999999999999999999988765
No 497
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.63 E-value=1.8e+02 Score=23.47 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=21.8
Q ss_pred HHHH-HHHHHHHHcCCHHHHHHHHHHHHccCCCChhH
Q 004243 715 QMLH-LRAAFYESIGDLTSAIRDSQAALCLDPNHMET 750 (766)
Q Consensus 715 ~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 750 (766)
+-++ .+|.+|...|+.+.|.+.|+.--.+.|++..-
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 3444 56666666666666666666666666665443
No 498
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=35.58 E-value=75 Score=24.18 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=22.2
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
+..+...|...-..|+|++|..+|..+++.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555566666679999999999998875
No 499
>PHA02790 Kelch-like protein; Provisional
Probab=35.50 E-value=34 Score=37.36 Aligned_cols=35 Identities=11% Similarity=0.431 Sum_probs=32.0
Q ss_pred hcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhh
Q 004243 154 LVGDIEDALILIDYGLEERATLLVASCLQVLLRELP 189 (766)
Q Consensus 154 ~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~ 189 (766)
.|+ .+||-.++..|..++.+.+.+.|.+|+.+++.
T Consensus 87 ~it-~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~ 121 (480)
T PHA02790 87 YID-SHNVVNLLRASILTSVEFIIYTCINFILRDFR 121 (480)
T ss_pred EEe-cccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 456 89999999999999999999999999998864
No 500
>PHA03098 kelch-like protein; Provisional
Probab=35.48 E-value=39 Score=37.57 Aligned_cols=35 Identities=6% Similarity=0.164 Sum_probs=31.8
Q ss_pred hcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhh
Q 004243 154 LVGDIEDALILIDYGLEERATLLVASCLQVLLRELP 189 (766)
Q Consensus 154 ~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~ 189 (766)
.++ .+|+.+++..|..++.+.|.+.|.+|+.+++.
T Consensus 72 ~i~-~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~ 106 (534)
T PHA03098 72 NIT-SNNVKDILSIANYLIIDFLINLCINYIIKIID 106 (534)
T ss_pred EEc-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 356 89999999999999999999999999998764
Done!