Query 004243
Match_columns 766
No_of_seqs 1149 out of 4597
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 18:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-38 5.4E-43 338.3 44.5 374 325-762 4-387 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 8E-38 2.7E-42 332.8 44.2 375 261-729 4-388 (388)
3 2xpi_A Anaphase-promoting comp 100.0 4.2E-36 1.4E-40 339.2 44.8 469 255-758 83-594 (597)
4 2xpi_A Anaphase-promoting comp 100.0 4.7E-34 1.6E-38 322.3 43.5 424 234-725 99-595 (597)
5 2gw1_A Mitochondrial precursor 100.0 1E-33 3.4E-38 313.3 39.8 416 254-759 4-494 (514)
6 3fp2_A TPR repeat-containing p 100.0 8E-34 2.7E-38 316.0 38.2 410 253-754 22-502 (537)
7 3ieg_A DNAJ homolog subfamily 100.0 1.5E-30 5.1E-35 273.2 39.9 335 320-766 3-358 (359)
8 2y4t_A DNAJ homolog subfamily 100.0 4.4E-31 1.5E-35 286.8 36.9 347 337-747 11-414 (450)
9 4g1t_A Interferon-induced prot 100.0 2.1E-31 7.1E-36 291.3 32.5 396 254-755 49-471 (472)
10 2gw1_A Mitochondrial precursor 100.0 2.5E-30 8.6E-35 286.0 37.0 396 320-763 6-464 (514)
11 2y4t_A DNAJ homolog subfamily 100.0 7E-30 2.4E-34 277.3 38.6 332 368-763 8-378 (450)
12 3fp2_A TPR repeat-containing p 100.0 5.2E-30 1.8E-34 285.2 32.8 400 320-763 25-477 (537)
13 3ieg_A DNAJ homolog subfamily 100.0 1.6E-28 5.3E-33 257.7 37.7 330 293-728 8-354 (359)
14 3htm_A Speckle-type POZ protei 100.0 9.8E-31 3.3E-35 241.5 14.1 150 43-196 23-172 (172)
15 3hve_A Gigaxonin; ubiquitin, c 100.0 1.3E-30 4.3E-35 256.9 12.8 154 43-200 20-175 (256)
16 4g1t_A Interferon-induced prot 100.0 9.5E-28 3.3E-32 262.3 32.3 388 220-717 53-466 (472)
17 3i3n_A Kelch-like protein 11; 100.0 6.4E-30 2.2E-34 255.1 8.6 154 43-200 21-183 (279)
18 3hym_B Cell division cycle pro 100.0 1.2E-26 4E-31 240.4 33.2 296 342-731 12-322 (330)
19 3hym_B Cell division cycle pro 100.0 1.7E-26 5.9E-31 239.1 33.9 291 384-759 21-315 (330)
20 1fch_A Peroxisomal targeting s 100.0 3.8E-27 1.3E-31 248.3 25.5 325 364-743 13-359 (368)
21 3hqi_A Speckle-type POZ protei 100.0 1.9E-28 6.5E-33 249.3 14.5 150 43-196 163-312 (312)
22 2xm6_A Protein corresponding t 100.0 1.4E-24 4.9E-29 237.7 43.6 363 349-755 36-447 (490)
23 2xm6_A Protein corresponding t 99.9 1.5E-24 5.1E-29 237.6 41.3 387 318-751 37-475 (490)
24 1fch_A Peroxisomal targeting s 99.9 1.3E-25 4.4E-30 236.6 28.9 297 265-646 34-359 (368)
25 4eoz_A Speckle-type POZ protei 99.9 2.8E-28 9.6E-33 217.9 5.8 132 43-178 14-145 (145)
26 2h6f_A Protein farnesyltransfe 99.9 6.2E-26 2.1E-30 236.4 21.2 251 469-760 89-365 (382)
27 2ooe_A Cleavage stimulation fa 99.9 3.2E-23 1.1E-27 229.4 40.7 406 254-748 11-497 (530)
28 4eqf_A PEX5-related protein; a 99.9 6.3E-25 2.2E-29 231.1 24.5 285 407-742 49-355 (365)
29 4eqf_A PEX5-related protein; a 99.9 5.2E-25 1.8E-29 231.7 23.8 248 476-763 64-342 (365)
30 2ooe_A Cleavage stimulation fa 99.9 1.8E-22 6E-27 223.4 42.8 393 341-759 2-474 (530)
31 2vkp_A BTB/POZ domain-containi 99.9 1.2E-25 4E-30 189.4 11.9 104 48-155 2-109 (109)
32 2h6f_A Protein farnesyltransfe 99.9 1.1E-24 3.6E-29 227.1 21.6 250 344-658 89-360 (382)
33 3u4t_A TPR repeat-containing p 99.9 3.7E-24 1.3E-28 214.9 23.3 248 477-761 3-268 (272)
34 3cv0_A Peroxisome targeting si 99.9 1.3E-23 4.5E-28 217.0 25.8 265 320-648 21-317 (327)
35 3cv0_A Peroxisome targeting si 99.9 6.6E-24 2.3E-28 219.3 23.4 276 426-747 22-319 (327)
36 2if5_A Zinc finger and BTB dom 99.9 3.3E-25 1.1E-29 189.9 10.1 106 43-151 14-119 (120)
37 3uq3_A Heat shock protein STI1 99.9 3.2E-23 1.1E-27 206.1 24.2 241 476-757 4-256 (258)
38 3e4b_A ALGK; tetratricopeptide 99.9 2.5E-22 8.7E-27 216.2 29.7 381 260-744 7-422 (452)
39 1r29_A B-cell lymphoma 6 prote 99.9 1.8E-24 6.3E-29 187.3 10.4 109 43-154 18-126 (127)
40 2ppi_A Gigaxonin; BTB domain, 99.9 1E-24 3.4E-29 192.2 8.7 107 43-152 36-144 (144)
41 2z8h_A Transcription regulator 99.9 5.7E-25 2E-29 193.0 6.4 112 43-160 25-137 (138)
42 2pl2_A Hypothetical conserved 99.9 7.5E-23 2.6E-27 197.2 21.6 197 474-741 2-212 (217)
43 3b84_A Zinc finger and BTB dom 99.9 9E-25 3.1E-29 186.2 7.0 105 43-154 13-117 (119)
44 2pl2_A Hypothetical conserved 99.9 1.2E-22 4.2E-27 195.7 22.5 198 349-611 2-211 (217)
45 1buo_A POZ domain, protein (pr 99.9 4.4E-24 1.5E-28 182.7 9.8 105 43-155 17-121 (121)
46 3u4t_A TPR repeat-containing p 99.9 2.9E-22 9.8E-27 201.1 24.6 246 352-658 3-262 (272)
47 3mkr_A Coatomer subunit epsilo 99.9 4.5E-22 1.5E-26 200.6 26.0 208 478-757 66-278 (291)
48 3mkr_A Coatomer subunit epsilo 99.9 4.8E-22 1.7E-26 200.4 25.4 144 586-762 102-248 (291)
49 2vpk_A Myoneurin; transcriptio 99.9 4.7E-24 1.6E-28 181.4 8.6 104 44-152 12-115 (116)
50 3e4b_A ALGK; tetratricopeptide 99.9 2.6E-21 8.8E-26 208.4 32.2 356 325-761 8-403 (452)
51 2yy9_A Zinc finger and BTB dom 99.9 2.1E-24 7.2E-29 188.2 6.1 107 43-156 14-120 (135)
52 3uq3_A Heat shock protein STI1 99.9 2.1E-21 7.1E-26 192.9 25.9 235 254-550 3-253 (258)
53 2q81_A MIZ-1 protein; BTB/POZ 99.9 1.3E-23 4.6E-28 179.0 6.0 102 43-152 16-117 (119)
54 2ihc_A Transcription regulator 99.9 2.2E-24 7.6E-29 185.3 0.4 106 43-152 18-123 (124)
55 1ouv_A Conserved hypothetical 99.9 1.4E-20 4.7E-25 188.9 27.9 228 473-749 2-257 (273)
56 3sf4_A G-protein-signaling mod 99.9 1.4E-21 4.7E-26 208.6 21.8 279 387-743 11-336 (406)
57 3ohu_A Transcription regulator 99.9 3E-24 1E-28 185.3 0.5 104 43-151 21-125 (125)
58 3sf4_A G-protein-signaling mod 99.9 6.1E-22 2.1E-26 211.3 18.1 197 477-732 127-365 (406)
59 3ga1_A Nucleus accumbens-assoc 99.9 1.1E-23 3.9E-28 182.5 2.9 105 44-155 23-128 (129)
60 4a1s_A PINS, partner of inscut 99.9 2.5E-21 8.5E-26 207.1 20.4 283 388-748 51-377 (411)
61 3m5b_A Zinc finger and BTB dom 99.9 5.3E-23 1.8E-27 173.9 5.7 93 49-153 25-117 (119)
62 3ro2_A PINS homolog, G-protein 99.9 4.1E-21 1.4E-25 198.9 20.2 283 388-748 8-337 (338)
63 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.5E-20 5.2E-25 188.7 23.2 219 476-737 42-269 (275)
64 1xi4_A Clathrin heavy chain; a 99.9 3E-17 1E-21 186.6 51.6 404 261-742 990-1427(1630)
65 1xi4_A Clathrin heavy chain; a 99.9 3.5E-18 1.2E-22 194.0 43.2 348 320-745 985-1347(1630)
66 4a1s_A PINS, partner of inscut 99.9 6.2E-21 2.1E-25 204.0 19.0 288 352-716 48-378 (411)
67 2q7f_A YRRB protein; TPR, prot 99.9 1.8E-20 6.1E-25 184.3 20.0 215 476-760 22-239 (243)
68 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.7E-20 5.8E-25 188.4 20.1 224 486-750 14-251 (275)
69 2ho1_A Type 4 fimbrial biogene 99.9 8.9E-20 3.1E-24 180.5 24.8 214 471-754 30-249 (252)
70 3fkc_A Transcriptional regulat 99.8 1.5E-21 5.1E-26 164.9 9.2 96 43-145 20-115 (116)
71 2vq2_A PILW, putative fimbrial 99.8 1.9E-19 6.7E-24 174.4 25.6 213 472-754 3-222 (225)
72 3vtx_A MAMA; tetratricopeptide 99.8 5.8E-20 2E-24 172.2 19.8 165 585-749 5-176 (184)
73 3ro2_A PINS homolog, G-protein 99.8 7.2E-20 2.5E-24 189.4 22.6 276 321-649 6-335 (338)
74 2ond_A Cleavage stimulation fa 99.8 7.9E-20 2.7E-24 186.7 21.9 241 463-754 36-303 (308)
75 3vtx_A MAMA; tetratricopeptide 99.8 1.3E-19 4.3E-24 169.9 20.8 171 350-544 3-174 (184)
76 4i17_A Hypothetical protein; T 99.8 4E-19 1.4E-23 172.8 24.8 212 474-761 4-227 (228)
77 2ond_A Cleavage stimulation fa 99.8 4.7E-19 1.6E-23 180.9 26.1 217 494-750 33-277 (308)
78 1ouv_A Conserved hypothetical 99.8 8.3E-19 2.8E-23 175.9 27.2 235 348-655 2-260 (273)
79 4abn_A Tetratricopeptide repea 99.8 8.2E-20 2.8E-24 197.9 20.8 208 493-740 84-318 (474)
80 2q7f_A YRRB protein; TPR, prot 99.8 3.8E-19 1.3E-23 174.8 19.3 210 319-552 22-235 (243)
81 4abn_A Tetratricopeptide repea 99.8 5E-19 1.7E-23 191.7 20.9 210 336-581 86-318 (474)
82 4i17_A Hypothetical protein; T 99.8 1.1E-17 3.9E-22 162.5 26.5 136 350-543 5-149 (228)
83 3ulq_A Response regulator aspa 99.8 2E-18 6.8E-23 182.5 22.8 233 479-746 105-371 (383)
84 2vq2_A PILW, putative fimbrial 99.8 1.3E-17 4.3E-22 161.5 26.5 210 348-655 4-220 (225)
85 3ulq_A Response regulator aspa 99.8 7.9E-18 2.7E-22 177.9 26.2 241 354-648 105-370 (383)
86 2ho1_A Type 4 fimbrial biogene 99.8 9.6E-18 3.3E-22 165.8 24.9 201 320-544 37-242 (252)
87 3qky_A Outer membrane assembly 99.8 4.1E-18 1.4E-22 169.5 21.0 205 471-757 9-238 (261)
88 4gyw_A UDP-N-acetylglucosamine 99.8 9E-19 3.1E-23 196.7 17.3 172 472-713 4-177 (723)
89 4gyw_A UDP-N-acetylglucosamine 99.8 1.2E-18 4.1E-23 195.7 17.9 175 346-544 3-178 (723)
90 3nf1_A KLC 1, kinesin light ch 99.8 1.8E-18 6E-23 177.0 13.2 234 473-746 23-310 (311)
91 3dra_A Protein farnesyltransfe 99.8 1.1E-16 3.6E-21 159.7 24.8 229 491-756 47-301 (306)
92 3q15_A PSP28, response regulat 99.8 1.6E-16 5.5E-21 167.4 27.5 231 479-744 103-366 (378)
93 1qqe_A Vesicular transport pro 99.8 2.4E-17 8.3E-22 166.6 19.6 217 492-756 32-282 (292)
94 2pzi_A Probable serine/threoni 99.8 2.5E-17 8.4E-22 186.6 21.7 182 471-696 388-583 (681)
95 1b89_A Protein (clathrin heavy 99.7 4.3E-18 1.5E-22 174.5 12.3 309 336-741 21-353 (449)
96 3qky_A Outer membrane assembly 99.7 7.9E-17 2.7E-21 160.1 20.9 179 345-544 8-228 (261)
97 3urz_A Uncharacterized protein 99.7 3.5E-17 1.2E-21 156.2 17.6 176 585-761 4-203 (208)
98 2pzi_A Probable serine/threoni 99.7 3.2E-17 1.1E-21 185.6 18.3 204 505-752 388-611 (681)
99 3q15_A PSP28, response regulat 99.7 7.4E-16 2.5E-20 162.3 27.3 240 354-646 103-365 (378)
100 3dra_A Protein farnesyltransfe 99.7 8.3E-16 2.8E-20 153.3 25.4 219 463-721 53-300 (306)
101 3urz_A Uncharacterized protein 99.7 5.7E-17 1.9E-21 154.7 16.5 179 476-723 3-199 (208)
102 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.6E-16 8.8E-21 152.3 21.1 209 476-749 3-219 (225)
103 1hz4_A MALT regulatory protein 99.7 1.3E-15 4.6E-20 160.1 27.9 311 353-747 15-353 (373)
104 3nf1_A KLC 1, kinesin light ch 99.7 1.4E-17 4.7E-22 170.3 12.2 257 347-649 22-310 (311)
105 1qqe_A Vesicular transport pro 99.7 1.8E-16 6.3E-21 160.1 18.2 207 359-651 44-274 (292)
106 1hz4_A MALT regulatory protein 99.7 3.3E-15 1.1E-19 157.1 27.1 269 427-745 16-324 (373)
107 4ga2_A E3 SUMO-protein ligase 99.7 2.4E-17 8.2E-22 147.9 9.1 142 590-761 2-147 (150)
108 1b89_A Protein (clathrin heavy 99.7 1.8E-17 6.1E-22 169.9 8.2 291 361-743 12-311 (449)
109 3as5_A MAMA; tetratricopeptide 99.7 1.2E-15 3.9E-20 142.5 18.7 167 585-751 8-181 (186)
110 4ga2_A E3 SUMO-protein ligase 99.7 9.2E-17 3.1E-21 144.1 10.1 135 565-729 7-149 (150)
111 4e6h_A MRNA 3'-END-processing 99.7 6.4E-13 2.2E-17 147.4 42.7 383 337-754 85-581 (679)
112 3as5_A MAMA; tetratricopeptide 99.7 1.9E-15 6.5E-20 141.0 18.8 169 352-544 8-177 (186)
113 3dss_A Geranylgeranyl transfer 99.7 1.5E-14 5.2E-19 144.7 25.0 228 488-755 40-316 (331)
114 3edt_B KLC 2, kinesin light ch 99.7 1.3E-15 4.3E-20 153.1 17.0 217 474-743 40-281 (283)
115 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.1E-14 3.7E-19 140.8 22.3 185 319-544 3-217 (225)
116 3edt_B KLC 2, kinesin light ch 99.6 1.9E-15 6.5E-20 151.8 16.8 219 489-762 13-266 (283)
117 4gco_A Protein STI-1; structur 99.6 1.1E-15 3.9E-20 132.1 12.4 112 646-757 8-124 (126)
118 3dss_A Geranylgeranyl transfer 99.6 1.2E-13 4.1E-18 138.2 28.6 244 267-552 40-317 (331)
119 3q7a_A Farnesyltransferase alp 99.6 2.4E-14 8.1E-19 143.8 22.4 240 477-756 54-345 (349)
120 4e6h_A MRNA 3'-END-processing 99.6 2.9E-12 9.8E-17 142.1 40.0 452 236-716 49-576 (679)
121 2ast_A S-phase kinase-associat 99.6 2.8E-15 9.6E-20 133.4 12.4 112 57-172 3-145 (159)
122 2r5s_A Uncharacterized protein 99.6 5.7E-15 1.9E-19 136.7 14.1 157 585-742 6-172 (176)
123 2r5s_A Uncharacterized protein 99.6 7E-15 2.4E-19 136.0 14.7 167 348-539 2-172 (176)
124 4gco_A Protein STI-1; structur 99.6 4.1E-15 1.4E-19 128.6 12.2 119 468-626 4-124 (126)
125 3gyz_A Chaperone protein IPGC; 99.6 1.7E-15 6E-20 134.8 8.9 109 640-748 25-138 (151)
126 3gyz_A Chaperone protein IPGC; 99.6 5.6E-15 1.9E-19 131.5 11.8 115 466-620 25-139 (151)
127 3qou_A Protein YBBN; thioredox 99.6 4.4E-14 1.5E-18 142.0 18.5 170 346-539 111-283 (287)
128 4f3v_A ESX-1 secretion system 99.6 2.2E-14 7.6E-19 139.1 15.3 225 480-755 10-248 (282)
129 3rjv_A Putative SEL1 repeat pr 99.6 6.5E-14 2.2E-18 133.7 18.3 180 574-758 5-210 (212)
130 2vgx_A Chaperone SYCD; alterna 99.6 8.5E-15 2.9E-19 130.7 10.2 124 640-763 10-138 (148)
131 3q7a_A Farnesyltransferase alp 99.6 2.2E-13 7.7E-18 136.7 21.3 100 337-442 73-176 (349)
132 2ifu_A Gamma-SNAP; membrane fu 99.6 2.4E-14 8.1E-19 145.7 14.3 161 517-713 42-226 (307)
133 3qou_A Protein YBBN; thioredox 99.5 1.5E-13 5.2E-18 138.1 17.9 168 473-742 113-283 (287)
134 3rjv_A Putative SEL1 repeat pr 99.5 6.8E-13 2.3E-17 126.6 21.5 185 337-626 5-209 (212)
135 2c2l_A CHIP, carboxy terminus 99.5 4.2E-14 1.4E-18 141.6 13.1 193 474-744 1-200 (281)
136 2ifu_A Gamma-SNAP; membrane fu 99.5 2.3E-13 7.8E-18 138.4 18.6 202 337-614 10-223 (307)
137 2vsy_A XCC0866; transferase, g 99.5 1E-13 3.4E-18 154.5 17.3 156 598-753 2-167 (568)
138 2c2l_A CHIP, carboxy terminus 99.5 5.9E-14 2E-18 140.5 13.3 85 460-544 21-105 (281)
139 4f3v_A ESX-1 secretion system 99.5 2.2E-13 7.7E-18 132.1 16.6 203 391-658 13-248 (282)
140 2vsy_A XCC0866; transferase, g 99.5 3.3E-13 1.1E-17 150.3 20.4 156 463-658 9-169 (568)
141 2hr2_A Hypothetical protein; a 99.5 1.3E-14 4.5E-19 126.8 5.9 130 617-764 11-152 (159)
142 2xcb_A PCRH, regulatory protei 99.5 5.5E-14 1.9E-18 124.7 10.0 103 661-763 32-135 (142)
143 1p5q_A FKBP52, FK506-binding p 99.5 2.7E-14 9.4E-19 146.9 6.9 176 568-743 78-294 (336)
144 2vgx_A Chaperone SYCD; alterna 99.5 3.2E-13 1.1E-17 120.4 12.7 109 466-614 10-118 (148)
145 2fo7_A Synthetic consensus TPR 99.5 2.3E-12 7.7E-17 112.7 17.1 128 620-747 4-136 (136)
146 1dce_A Protein (RAB geranylger 99.5 8.3E-14 2.8E-18 152.7 9.5 184 336-543 47-270 (567)
147 1p5q_A FKBP52, FK506-binding p 99.4 4E-14 1.4E-18 145.6 5.8 142 465-646 135-294 (336)
148 2xcb_A PCRH, regulatory protei 99.4 4.7E-13 1.6E-17 118.7 11.9 110 465-614 6-115 (142)
149 2fo7_A Synthetic consensus TPR 99.4 3.5E-12 1.2E-16 111.4 16.6 132 478-649 2-135 (136)
150 3upv_A Heat shock protein STI1 99.4 8.5E-13 2.9E-17 114.3 12.1 114 618-761 5-125 (126)
151 1hh8_A P67PHOX, NCF-2, neutrop 99.4 3.2E-12 1.1E-16 122.2 17.1 128 586-714 7-154 (213)
152 2e2e_A Formate-dependent nitri 99.4 1.1E-12 3.7E-17 121.4 12.6 135 596-760 21-161 (177)
153 4ajy_C Transcription elongatio 99.4 6.7E-13 2.3E-17 106.7 9.3 81 57-140 4-97 (97)
154 4gcn_A Protein STI-1; structur 99.4 1.5E-12 5.1E-17 112.6 12.2 106 476-615 7-113 (127)
155 2qfc_A PLCR protein; TPR, HTH, 99.4 1.2E-11 4.2E-16 124.7 20.0 177 508-744 72-267 (293)
156 4gcn_A Protein STI-1; structur 99.4 1.1E-12 3.7E-17 113.5 10.3 110 618-758 9-126 (127)
157 2hr2_A Hypothetical protein; a 99.4 6.1E-13 2.1E-17 116.3 7.5 111 388-544 14-135 (159)
158 3rkv_A Putative peptidylprolyl 99.4 4.8E-12 1.6E-16 115.0 13.8 127 618-764 12-148 (162)
159 3mv2_B Coatomer subunit epsilo 99.4 5.5E-11 1.9E-15 116.9 22.0 77 466-542 89-167 (310)
160 1dce_A Protein (RAB geranylger 99.4 1E-11 3.5E-16 136.1 17.6 166 597-762 40-240 (567)
161 3sz7_A HSC70 cochaperone (SGT) 99.4 4.5E-12 1.5E-16 115.5 12.2 116 617-762 11-129 (164)
162 3upv_A Heat shock protein STI1 99.4 7.5E-12 2.6E-16 108.2 13.0 102 474-615 1-102 (126)
163 1hh8_A P67PHOX, NCF-2, neutrop 99.3 4.1E-11 1.4E-15 114.4 18.7 144 323-511 9-155 (213)
164 2fbn_A 70 kDa peptidylprolyl i 99.3 2.6E-12 8.9E-17 121.3 9.9 162 588-763 7-171 (198)
165 3u3w_A Transcriptional activat 99.3 4.8E-11 1.6E-15 120.4 19.8 172 480-710 78-266 (293)
166 1a17_A Serine/threonine protei 99.3 3E-11 1E-15 110.0 16.7 130 477-646 13-146 (166)
167 2qfc_A PLCR protein; TPR, HTH, 99.3 1.9E-11 6.3E-16 123.4 16.7 175 349-541 72-267 (293)
168 3mv2_B Coatomer subunit epsilo 99.3 3.4E-11 1.2E-15 118.4 17.7 238 266-544 23-286 (310)
169 3sz7_A HSC70 cochaperone (SGT) 99.3 1.6E-11 5.6E-16 111.7 13.7 113 474-626 8-122 (164)
170 1a17_A Serine/threonine protei 99.3 3.1E-11 1.1E-15 109.9 15.4 125 619-743 15-146 (166)
171 2lni_A Stress-induced-phosphop 99.3 2.1E-11 7.1E-16 106.3 13.5 120 473-632 12-133 (133)
172 1fs1_B SKP1, cyclin A/CDK2-ass 99.3 1.3E-11 4.3E-16 106.8 11.1 98 57-163 4-128 (141)
173 2e2e_A Formate-dependent nitri 99.3 7.8E-12 2.7E-16 115.6 10.6 124 489-652 22-150 (177)
174 3q49_B STIP1 homology and U bo 99.3 2.3E-11 7.8E-16 106.9 12.9 102 661-762 23-130 (137)
175 3gw4_A Uncharacterized protein 99.3 3.6E-11 1.2E-15 113.7 15.2 167 487-711 2-177 (203)
176 3u3w_A Transcriptional activat 99.3 4.2E-11 1.4E-15 120.8 15.8 168 356-541 79-267 (293)
177 1zu2_A Mitochondrial import re 99.3 6.3E-12 2.2E-16 109.6 8.2 100 660-759 15-136 (158)
178 1hxi_A PEX5, peroxisome target 99.3 1.4E-11 4.9E-16 105.3 10.4 88 662-749 32-120 (121)
179 3q49_B STIP1 homology and U bo 99.3 6.1E-11 2.1E-15 104.1 14.8 119 472-630 4-129 (137)
180 2vyi_A SGTA protein; chaperone 99.3 2.6E-11 8.8E-16 105.2 11.8 121 473-633 8-130 (131)
181 2fbn_A 70 kDa peptidylprolyl i 99.3 4.6E-12 1.6E-16 119.6 7.4 149 565-743 14-186 (198)
182 1hxi_A PEX5, peroxisome target 99.2 3.8E-11 1.3E-15 102.6 11.3 99 478-616 18-116 (121)
183 2lni_A Stress-induced-phosphop 99.2 5.8E-11 2E-15 103.4 12.7 115 617-761 16-131 (133)
184 1elw_A TPR1-domain of HOP; HOP 99.2 1.1E-10 3.6E-15 99.2 13.9 113 617-759 4-117 (118)
185 2xev_A YBGF; tetratricopeptide 99.2 1.2E-10 4.2E-15 100.9 14.0 118 619-763 4-125 (129)
186 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 5.9E-12 2E-16 135.2 6.6 139 597-735 246-406 (457)
187 2vyi_A SGTA protein; chaperone 99.2 1.1E-10 3.6E-15 101.3 13.2 116 618-763 13-129 (131)
188 1na0_A Designed protein CTPR3; 99.2 2.3E-10 7.8E-15 98.2 15.2 119 473-631 4-125 (125)
189 3k9i_A BH0479 protein; putativ 99.2 1.3E-11 4.3E-16 105.1 6.9 101 660-760 3-107 (117)
190 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 2.7E-11 9.2E-16 130.1 10.6 133 467-639 258-407 (457)
191 2dba_A Smooth muscle cell asso 99.2 1.7E-10 5.7E-15 102.7 14.1 117 617-760 28-145 (148)
192 4b4t_Q 26S proteasome regulato 99.2 3.8E-10 1.3E-14 120.9 19.5 208 477-743 4-245 (434)
193 2p1m_A SKP1-like protein 1A; F 99.2 4.6E-12 1.6E-16 112.3 2.8 111 56-173 5-145 (160)
194 2uy1_A Cleavage stimulation fa 99.2 6.1E-08 2.1E-12 104.4 35.5 49 495-544 197-245 (493)
195 1wao_1 Serine/threonine protei 99.2 2.6E-12 8.8E-17 138.6 1.0 135 477-651 6-155 (477)
196 1elw_A TPR1-domain of HOP; HOP 99.2 4.1E-10 1.4E-14 95.5 14.3 111 476-626 3-115 (118)
197 1na0_A Designed protein CTPR3; 99.2 4.9E-10 1.7E-14 96.1 14.9 114 617-760 9-123 (125)
198 2kck_A TPR repeat; tetratricop 99.2 1.4E-10 4.7E-15 97.4 11.1 103 473-615 2-107 (112)
199 3rkv_A Putative peptidylprolyl 99.2 1.7E-10 5.8E-15 104.7 11.9 115 477-631 11-146 (162)
200 1elr_A TPR2A-domain of HOP; HO 99.1 2E-10 6.7E-15 99.6 11.2 117 618-765 5-129 (131)
201 1ihg_A Cyclophilin 40; ppiase 99.1 1.5E-10 5.1E-15 120.1 12.2 132 618-763 224-356 (370)
202 3gw4_A Uncharacterized protein 99.1 5.5E-10 1.9E-14 105.5 15.2 143 473-648 21-178 (203)
203 4b4t_Q 26S proteasome regulato 99.1 3.8E-10 1.3E-14 121.0 15.7 211 352-614 4-245 (434)
204 1wao_1 Serine/threonine protei 99.1 1E-11 3.6E-16 133.8 3.1 132 586-747 7-154 (477)
205 2dba_A Smooth muscle cell asso 99.1 6.7E-10 2.3E-14 98.7 14.4 115 472-626 23-142 (148)
206 2kck_A TPR repeat; tetratricop 99.1 1.9E-10 6.5E-15 96.5 9.6 88 661-748 20-111 (112)
207 2if4_A ATFKBP42; FKBP-like, al 99.1 5.2E-11 1.8E-15 122.4 6.7 71 474-544 176-263 (338)
208 2if4_A ATFKBP42; FKBP-like, al 99.1 6.7E-11 2.3E-15 121.5 7.3 150 585-749 179-334 (338)
209 3ro3_A PINS homolog, G-protein 99.1 9.5E-10 3.3E-14 99.3 14.0 139 477-649 9-161 (164)
210 1zu2_A Mitochondrial import re 99.1 2.4E-10 8.1E-15 99.7 9.2 82 463-544 22-124 (158)
211 1ihg_A Cyclophilin 40; ppiase 99.0 1.3E-09 4.6E-14 112.9 14.2 122 477-638 223-362 (370)
212 1elr_A TPR2A-domain of HOP; HO 99.0 1.1E-09 3.9E-14 94.7 11.3 120 585-727 4-125 (131)
213 2xev_A YBGF; tetratricopeptide 99.0 4.1E-09 1.4E-13 91.1 14.1 101 426-544 3-109 (129)
214 3ro3_A PINS homolog, G-protein 99.0 1.1E-09 3.7E-14 98.9 10.7 139 585-747 9-162 (164)
215 2kat_A Uncharacterized protein 99.0 2.5E-09 8.6E-14 90.4 11.7 94 665-758 3-99 (115)
216 3k9i_A BH0479 protein; putativ 99.0 1.4E-09 4.7E-14 92.3 8.6 82 463-544 10-94 (117)
217 2uy1_A Cleavage stimulation fa 99.0 6.8E-07 2.3E-11 96.3 31.1 347 337-742 14-412 (493)
218 2kat_A Uncharacterized protein 98.9 7.8E-09 2.7E-13 87.3 11.0 82 463-544 5-86 (115)
219 3ma5_A Tetratricopeptide repea 98.9 5E-09 1.7E-13 85.8 7.8 75 676-750 2-77 (100)
220 3ma5_A Tetratricopeptide repea 98.9 1.4E-08 4.9E-13 83.1 10.3 73 472-544 2-74 (100)
221 1na3_A Designed protein CTPR2; 98.8 2.5E-08 8.4E-13 79.9 10.2 83 475-557 7-90 (91)
222 1na3_A Designed protein CTPR2; 98.8 2.3E-08 7.9E-13 80.0 9.9 82 679-760 7-89 (91)
223 1hv2_A Elongin C, ELC1; protei 98.8 2.2E-08 7.5E-13 80.1 9.4 81 56-140 5-99 (99)
224 1klx_A Cysteine rich protein B 98.8 9.1E-08 3.1E-12 83.5 13.0 120 599-755 9-136 (138)
225 1pc2_A Mitochondria fission pr 98.8 6.2E-08 2.1E-12 83.3 11.4 101 664-764 15-121 (152)
226 2l6j_A TPR repeat-containing p 98.7 5.9E-08 2E-12 81.0 11.1 82 681-762 4-92 (111)
227 3n71_A Histone lysine methyltr 98.7 8E-08 2.7E-12 102.5 13.9 132 590-744 314-465 (490)
228 3u64_A Protein TP_0956; tetrat 98.7 2E-07 6.7E-12 89.0 14.8 86 662-747 178-273 (301)
229 2fnj_C Transcription elongatio 98.7 2E-08 6.7E-13 79.9 6.4 81 57-140 3-96 (96)
230 2l6j_A TPR repeat-containing p 98.7 2.5E-08 8.5E-13 83.4 7.3 69 476-544 3-71 (111)
231 3v7d_A Suppressor of kinetocho 98.7 1.4E-07 4.8E-12 83.9 12.3 97 56-156 8-134 (169)
232 3n71_A Histone lysine methyltr 98.7 1.8E-07 6.2E-12 99.8 15.4 134 482-647 314-465 (490)
233 1klx_A Cysteine rich protein B 98.7 2.2E-07 7.4E-12 81.1 13.0 110 491-646 9-126 (138)
234 3drz_A BTB/POZ domain-containi 98.7 1.9E-07 6.7E-12 76.1 10.9 94 56-153 7-106 (107)
235 3ly7_A Transcriptional activat 98.6 4.6E-07 1.6E-11 90.6 14.6 76 673-748 269-344 (372)
236 2kc7_A BFR218_protein; tetratr 98.6 1.8E-07 6.1E-12 76.2 9.7 77 685-761 4-84 (99)
237 3bee_A Putative YFRE protein; 98.6 3.2E-07 1.1E-11 73.0 10.7 83 677-759 2-88 (93)
238 3ly7_A Transcriptional activat 98.6 2.6E-06 8.8E-11 85.2 18.5 78 470-548 270-347 (372)
239 2kc7_A BFR218_protein; tetratr 98.5 3.4E-07 1.1E-11 74.5 9.6 68 480-547 3-72 (99)
240 3u64_A Protein TP_0956; tetrat 98.5 4.5E-06 1.5E-10 79.7 18.1 82 463-544 183-273 (301)
241 3bee_A Putative YFRE protein; 98.5 6.7E-07 2.3E-11 71.2 9.2 72 473-544 2-76 (93)
242 2v5f_A Prolyl 4-hydroxylase su 98.4 1.3E-06 4.3E-11 71.7 10.0 84 681-764 5-96 (104)
243 1nzn_A CGI-135 protein, fissio 98.4 3.8E-06 1.3E-10 69.3 11.6 101 664-764 18-124 (126)
244 3qww_A SET and MYND domain-con 98.3 1E-06 3.4E-11 92.4 9.4 78 681-758 340-431 (433)
245 1vcb_B Protein (elongin C); tu 98.3 1.4E-06 4.7E-11 71.1 7.4 82 56-140 18-112 (112)
246 1pc2_A Mitochondria fission pr 98.3 4E-06 1.4E-10 72.1 10.4 84 465-548 20-109 (152)
247 2eqx_A Kelch repeat and BTB do 98.1 7.8E-07 2.7E-11 72.5 2.5 48 152-200 5-52 (105)
248 3qwp_A SET and MYND domain-con 98.1 1.6E-05 5.3E-10 83.6 12.1 79 681-759 329-421 (429)
249 3qwp_A SET and MYND domain-con 98.1 2.7E-05 9.2E-10 81.8 13.2 110 593-725 295-424 (429)
250 3qww_A SET and MYND domain-con 98.1 8.9E-06 3E-10 85.2 9.3 98 597-717 310-423 (433)
251 2v5f_A Prolyl 4-hydroxylase su 98.1 2.9E-05 9.8E-10 63.5 10.5 76 476-551 4-87 (104)
252 1y8m_A FIS1; mitochondria, unk 97.9 0.00035 1.2E-08 58.4 13.3 87 678-764 36-127 (144)
253 3drx_A BTB/POZ domain-containi 97.8 6.3E-05 2.2E-09 67.4 9.4 96 55-154 12-113 (202)
254 3o48_A Mitochondria fission 1 97.8 0.00011 3.9E-09 60.5 10.0 85 680-764 39-128 (134)
255 4g26_A Pentatricopeptide repea 97.8 0.002 6.9E-08 69.1 22.4 106 586-720 106-216 (501)
256 4g26_A Pentatricopeptide repea 97.8 0.00089 3E-08 71.9 19.3 161 586-747 27-210 (501)
257 1nzn_A CGI-135 protein, fissio 97.6 0.00046 1.6E-08 56.9 10.7 84 337-420 20-109 (126)
258 4h7y_A Dual specificity protei 97.3 0.0034 1.2E-07 52.9 11.4 116 613-751 9-131 (161)
259 3ffl_A Anaphase-promoting comp 97.0 0.0035 1.2E-07 54.1 9.7 132 477-627 20-165 (167)
260 4h7y_A Dual specificity protei 97.0 0.0061 2.1E-07 51.3 10.5 58 661-718 74-131 (161)
261 3ffl_A Anaphase-promoting comp 96.9 0.0075 2.6E-07 52.1 10.8 131 586-724 21-165 (167)
262 3kvt_A Potassium channel prote 96.9 0.00033 1.1E-08 57.3 1.8 85 56-144 6-93 (115)
263 1y8m_A FIS1; mitochondria, unk 96.6 0.032 1.1E-06 46.7 12.1 71 474-544 36-110 (144)
264 1s1g_A Potassium voltage-gated 96.6 0.002 6.8E-08 53.4 4.7 91 55-152 13-110 (124)
265 3o48_A Mitochondria fission 1 96.4 0.023 7.8E-07 47.0 9.9 69 476-544 39-111 (134)
266 1t1d_A Protein (potassium chan 96.4 0.0018 6.3E-08 51.3 3.2 84 57-144 3-90 (100)
267 1nn7_A Potassium channel KV4.2 96.4 0.0011 3.9E-08 53.2 1.8 80 57-143 2-86 (105)
268 2nz0_B Potassium voltage-gated 96.2 0.0029 9.9E-08 53.6 3.3 82 55-143 35-121 (140)
269 3txn_A 26S proteasome regulato 95.8 0.97 3.3E-05 45.9 20.7 59 588-646 102-168 (394)
270 3mkq_A Coatomer beta'-subunit; 95.5 1.1 3.8E-05 51.3 22.9 44 486-534 608-652 (814)
271 3mkq_A Coatomer beta'-subunit; 95.1 0.77 2.6E-05 52.6 19.8 76 481-612 633-708 (814)
272 3kae_A CDC27, possible protein 95.0 1.5 5.1E-05 37.6 17.7 97 320-419 33-148 (242)
273 3mkq_B Coatomer subunit alpha; 94.7 2.1 7.1E-05 37.6 16.7 56 476-539 7-62 (177)
274 3kae_A CDC27, possible protein 94.5 2.1 7E-05 36.7 17.7 62 473-539 29-90 (242)
275 4gns_B Protein CSD3, chitin bi 94.3 0.69 2.4E-05 51.3 15.4 60 478-537 338-397 (754)
276 4gns_B Protein CSD3, chitin bi 94.0 0.32 1.1E-05 54.0 12.0 58 683-740 339-397 (754)
277 3txn_A 26S proteasome regulato 93.9 2.2 7.4E-05 43.4 17.1 101 481-614 103-210 (394)
278 1zbp_A Hypothetical protein VP 92.8 1.6 5.6E-05 41.0 12.9 59 486-544 6-64 (273)
279 2ff4_A Probable regulatory pro 92.7 1.2 4.1E-05 45.6 13.3 124 624-757 122-254 (388)
280 1qsa_A Protein (soluble lytic 92.6 14 0.00047 40.2 30.8 54 473-526 98-151 (618)
281 1zbp_A Hypothetical protein VP 92.1 1.5 5.2E-05 41.3 11.7 60 361-420 6-66 (273)
282 2ff4_A Probable regulatory pro 91.6 2.3 7.9E-05 43.5 13.8 61 479-539 173-233 (388)
283 1ya0_A SMG-7 transcript varian 91.5 1.2 4.1E-05 47.0 11.6 48 663-710 168-215 (497)
284 4b4t_P 26S proteasome regulato 90.6 7.9 0.00027 40.3 17.0 60 585-644 137-204 (445)
285 3mkq_B Coatomer subunit alpha; 89.8 7.2 0.00025 34.2 13.1 100 596-707 16-115 (177)
286 1ya0_A SMG-7 transcript varian 89.4 1.9 6.4E-05 45.4 10.9 78 479-556 154-232 (497)
287 3spa_A Mtrpol, DNA-directed RN 89.0 4.6 0.00016 46.1 14.0 96 511-647 127-231 (1134)
288 3spa_A Mtrpol, DNA-directed RN 88.7 3.7 0.00013 46.8 13.1 92 618-710 128-230 (1134)
289 2vkp_A BTB/POZ domain-containi 87.0 0.55 1.9E-05 37.9 4.0 33 155-188 77-109 (109)
290 3lvg_A Clathrin heavy chain 1; 86.5 0.0064 2.2E-07 62.0 -9.3 259 319-607 53-326 (624)
291 4b4t_P 26S proteasome regulato 86.1 30 0.001 35.8 17.8 101 478-614 138-247 (445)
292 4fhn_B Nucleoporin NUP120; pro 85.1 41 0.0014 39.8 20.5 138 357-536 817-963 (1139)
293 1qsa_A Protein (soluble lytic 84.8 48 0.0017 35.9 36.1 135 595-739 295-438 (618)
294 4b4t_S RPN3, 26S proteasome re 80.8 3.5 0.00012 43.1 7.7 142 485-650 144-303 (523)
295 2r9r_B Paddle chimera voltage 80.5 1.7 5.9E-05 46.2 5.5 82 56-144 53-141 (514)
296 4b4t_R RPN7, 26S proteasome re 80.5 3.6 0.00012 42.7 7.9 63 585-647 131-198 (429)
297 4b4t_R RPN7, 26S proteasome re 80.3 4.6 0.00016 41.9 8.7 61 478-538 132-195 (429)
298 4b4t_S RPN3, 26S proteasome re 80.1 2.9 0.0001 43.7 6.8 138 595-748 146-304 (523)
299 2eqx_A Kelch repeat and BTB do 78.8 1.9 6.6E-05 34.3 4.0 34 123-156 8-41 (105)
300 4fhn_B Nucleoporin NUP120; pro 78.2 34 0.0012 40.6 16.3 130 468-633 833-987 (1139)
301 1r29_A B-cell lymphoma 6 prote 78.2 1.9 6.5E-05 35.8 4.1 32 155-187 95-126 (127)
302 2wpv_A GET4, UPF0363 protein Y 76.8 44 0.0015 32.5 13.7 150 587-741 35-215 (312)
303 2yy9_A Zinc finger and BTB dom 76.7 1.1 3.7E-05 37.8 2.1 35 155-190 87-121 (135)
304 2z8h_A Transcription regulator 76.4 0.9 3.1E-05 38.5 1.5 34 155-189 101-134 (138)
305 3ax2_A Mitochondrial import re 74.3 8.4 0.00029 27.9 5.8 38 719-756 22-59 (73)
306 1buo_A POZ domain, protein (pr 74.1 3.2 0.00011 34.0 4.3 32 155-187 89-120 (121)
307 2vpk_A Myoneurin; transcriptio 73.6 2.7 9.1E-05 34.2 3.7 30 155-185 86-115 (116)
308 3b84_A Zinc finger and BTB dom 72.8 1.8 6E-05 35.5 2.4 32 155-187 86-117 (119)
309 2q81_A MIZ-1 protein; BTB/POZ 72.8 3.1 0.00011 33.9 3.9 30 155-185 88-117 (119)
310 3lvg_A Clathrin heavy chain 1; 70.6 0.015 5.1E-07 59.4 -12.6 250 475-734 52-324 (624)
311 4ady_A RPN2, 26S proteasome re 69.9 1.6E+02 0.0053 33.6 32.8 42 240-282 55-96 (963)
312 2if5_A Zinc finger and BTB dom 68.4 5 0.00017 32.7 4.3 29 155-184 91-119 (120)
313 3htm_A Speckle-type POZ protei 60.7 5.6 0.00019 34.9 3.4 34 123-156 132-165 (172)
314 3m5b_A Zinc finger and BTB dom 59.6 7 0.00024 31.8 3.5 32 154-186 86-117 (119)
315 2wpv_A GET4, UPF0363 protein Y 58.4 1.4E+02 0.0047 29.0 15.4 27 509-535 132-158 (312)
316 2ppi_A Gigaxonin; BTB domain, 58.2 4.5 0.00015 34.4 2.1 29 155-184 115-143 (144)
317 2crb_A Nuclear receptor bindin 56.7 19 0.00065 27.2 4.8 31 255-285 14-44 (97)
318 4eoz_A Speckle-type POZ protei 54.1 5.7 0.00019 33.7 2.1 34 155-189 91-124 (145)
319 1om2_A Protein (mitochondrial 53.5 15 0.00051 28.2 4.0 33 720-752 26-58 (95)
320 2plx_B Peptide inhibitor; heli 53.3 12 0.00041 19.5 2.3 22 162-183 2-23 (26)
321 3ax2_A Mitochondrial import re 52.3 26 0.00087 25.4 4.9 34 685-718 21-54 (73)
322 2w2u_A Hypothetical P60 katani 50.4 26 0.0009 26.2 4.9 32 254-285 17-48 (83)
323 2ast_A S-phase kinase-associat 48.0 25 0.00087 30.2 5.3 64 123-189 49-127 (159)
324 1wy6_A Hypothetical protein ST 47.9 46 0.0016 27.6 6.2 79 631-709 75-153 (172)
325 3ga1_A Nucleus accumbens-assoc 47.5 2.9 9.8E-05 34.8 -0.9 33 154-187 95-127 (129)
326 3hqi_A Speckle-type POZ protei 45.1 13 0.00044 36.5 3.4 34 123-156 272-305 (312)
327 3ubw_A 14-3-3E, 14-3-3 protein 44.8 2E+02 0.0068 26.8 16.9 60 353-412 32-94 (261)
328 4ady_A RPN2, 26S proteasome re 43.7 4.1E+02 0.014 30.2 26.8 122 395-539 384-518 (963)
329 3hve_A Gigaxonin; ubiquitin, c 42.7 17 0.00059 34.3 3.7 33 155-188 99-131 (256)
330 4gq2_M Nucleoporin NUP120; bet 42.0 2.9E+02 0.0099 31.8 14.5 109 481-614 814-926 (950)
331 1fs1_B SKP1, cyclin A/CDK2-ass 41.2 81 0.0028 26.3 7.3 82 105-189 24-122 (141)
332 2v6y_A AAA family ATPase, P60 40.4 39 0.0013 25.2 4.6 31 255-285 10-40 (83)
333 3i3n_A Kelch-like protein 11; 40.1 18 0.00063 34.7 3.5 33 155-188 107-139 (279)
334 2w2u_A Hypothetical P60 katani 36.8 32 0.0011 25.7 3.5 19 690-708 28-46 (83)
335 2v6y_A AAA family ATPase, P60 36.0 36 0.0012 25.4 3.8 19 690-708 20-38 (83)
336 2ihc_A Transcription regulator 35.0 2.8 9.4E-05 34.6 -2.9 30 155-185 94-123 (124)
337 2crb_A Nuclear receptor bindin 34.4 47 0.0016 25.1 3.9 28 681-708 15-42 (97)
338 2ijq_A Hypothetical protein; s 34.0 1.9E+02 0.0064 24.8 8.3 59 685-743 36-104 (161)
339 1wfd_A Hypothetical protein 15 33.9 1.5E+02 0.0053 22.5 7.3 18 692-709 26-43 (93)
340 2rpa_A Katanin P60 ATPase-cont 33.5 29 0.001 25.5 2.8 26 260-285 16-41 (78)
341 4a5x_A MITD1, MIT domain-conta 33.3 1.5E+02 0.0052 22.1 7.3 19 691-709 26-44 (86)
342 1o9d_A 14-3-3-like protein C; 33.2 3E+02 0.01 25.6 14.7 167 514-742 11-206 (260)
343 3u84_A Menin; MLL, JUND, ledgf 33.2 2.2E+02 0.0076 28.4 9.5 42 337-378 298-344 (550)
344 2dl1_A Spartin; SPG20, MIT, st 31.9 43 0.0015 26.7 3.6 12 695-706 36-47 (116)
345 2br9_A 14-3-3E, 14-3-3 protein 31.8 3E+02 0.01 25.2 15.8 57 354-410 7-66 (234)
346 2v6x_A Vacuolar protein sortin 31.7 63 0.0021 24.1 4.5 31 255-285 12-42 (85)
347 4a5x_A MITD1, MIT domain-conta 31.7 69 0.0024 24.0 4.7 25 261-285 21-45 (86)
348 1wfd_A Hypothetical protein 15 30.8 66 0.0023 24.6 4.6 30 256-285 15-44 (93)
349 3re2_A Predicted protein; meni 30.8 2.5E+02 0.0084 27.6 9.2 42 337-378 276-322 (472)
350 1om2_A Protein (mitochondrial 30.4 46 0.0016 25.5 3.5 33 685-717 24-56 (95)
351 3iqu_A 14-3-3 protein sigma; s 29.5 3.3E+02 0.011 24.9 18.5 61 353-413 9-72 (236)
352 3t5x_A PCI domain-containing p 29.4 99 0.0034 27.7 6.3 37 254-290 12-48 (203)
353 2vkj_A TM1634; membrane protei 29.0 1.7E+02 0.0059 21.8 6.1 32 254-285 51-82 (106)
354 3esl_A Checkpoint serine/threo 29.0 1.4E+02 0.0046 26.7 6.8 68 647-714 76-148 (202)
355 4gq2_M Nucleoporin NUP120; bet 27.4 7.4E+02 0.025 28.3 15.4 110 358-507 816-927 (950)
356 4gq4_A Menin; tumor suppressor 26.9 4E+02 0.014 26.8 10.1 77 621-708 246-330 (489)
357 2cpt_A SKD1 protein, vacuolar 26.7 80 0.0027 25.4 4.6 30 256-285 18-47 (117)
358 3t5x_A PCI domain-containing p 25.9 1.2E+02 0.0041 27.2 6.2 33 478-510 15-47 (203)
359 3t5v_B Nuclear mRNA export pro 25.5 3.8E+02 0.013 27.6 10.5 112 173-289 138-254 (455)
360 3uzd_A 14-3-3 protein gamma; s 24.8 4.2E+02 0.014 24.5 18.8 61 354-414 6-69 (248)
361 2cmy_B Beta trypsin, veronica 24.1 24 0.00082 19.6 0.7 23 162-184 7-29 (34)
362 3ohu_A Transcription regulator 23.7 4.2 0.00014 33.5 -3.8 30 154-184 96-125 (125)
363 3lpz_A GET4 (YOR164C homolog); 23.6 5.2E+02 0.018 25.2 25.7 227 481-757 16-291 (336)
364 2v6x_A Vacuolar protein sortin 23.5 2.3E+02 0.0077 21.0 7.0 18 692-709 24-41 (85)
365 2rpa_A Katanin P60 ATPase-cont 23.1 64 0.0022 23.7 3.0 25 719-743 17-41 (78)
366 3t5v_B Nuclear mRNA export pro 23.1 95 0.0033 32.0 5.5 62 482-543 181-253 (455)
367 3re2_A Predicted protein; meni 22.7 1.6E+02 0.0054 28.9 6.3 78 621-709 239-324 (472)
368 2p1m_A SKP1-like protein 1A; F 22.5 53 0.0018 28.2 3.0 34 155-189 93-126 (160)
369 2cfu_A SDSA1; SDS-hydrolase, l 22.3 2.3E+02 0.0077 31.0 8.7 42 720-761 455-496 (658)
370 2npm_A 14-3-3 domain containin 21.8 4.9E+02 0.017 24.2 18.0 58 354-411 30-93 (260)
371 3u84_A Menin; MLL, JUND, ledgf 20.3 1.8E+02 0.0062 29.1 6.3 78 621-709 261-346 (550)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-38 Score=338.29 Aligned_cols=374 Identities=17% Similarity=0.150 Sum_probs=347.6
Q ss_pred HHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhH
Q 004243 325 YQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDY 401 (766)
Q Consensus 325 ~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~ 401 (766)
.++..++..|+. |+..++++++.+|+++.++..+|.++...|++++|...++++++.+| ++..+..+|.++...|++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 356667778875 99999999999999999999999999999999999999999999999 455566699999999999
Q ss_pred HHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHH
Q 004243 402 ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRF 481 (766)
Q Consensus 402 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~ 481 (766)
++|+..|+++++.+|++.. ++..++.++...|++++|. ..+.++++.+|+...++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~------------------~~~~~al~~~p~~~~~~~ 139 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFID------GYINLAAALVAAGDMEGAV------------------QAYVSALQYNPDLYCVRS 139 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHSCSSHHH------------------HHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHHcCcchHH------HHHHHHHHHHHcCCHHHHH------------------HHHHHHHHhCCCcHHHHH
Confidence 9999999999999999984 8889999999999999984 556899999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCC
Q 004243 482 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDP 561 (766)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~ 561 (766)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------------- 202 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF----------------- 202 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-----------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHH
Q 004243 562 ESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDE 639 (766)
Q Consensus 562 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~ 639 (766)
..++..+|.++...|++++|+..|++++..+ ++.++.++|.++...|++++|+..
T Consensus 203 -----------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 203 -----------------------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp -----------------------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5668889999999999999999999999984 567899999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-
Q 004243 640 MTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL- 714 (766)
Q Consensus 640 ~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 714 (766)
|+++++..|+++.++..+| ..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 260 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 339 (388)
T 1w3b_A 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339 (388)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999888 56999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhh
Q 004243 715 QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 762 (766)
..+..+|.++...|++++|+..|+++++++|++++++..++.+...++
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 556689999999999999999999999999999999999988766543
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8e-38 Score=332.81 Aligned_cols=375 Identities=17% Similarity=0.113 Sum_probs=342.8
Q ss_pred HhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCcH--HH
Q 004243 261 QLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGRE--KI 338 (766)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--A~ 338 (766)
.+|..+++.|++++|+..|++++..+|.+... +..++..++..++. |+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------------------------------~~~l~~~~~~~~~~~~a~ 53 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGV------------------------------LLLLSSIHFQCRRLDRSA 53 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH------------------------------HHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH------------------------------HHHHHHHHHHcCCHHHHH
Confidence 46888999999999999999999998877544 22334444445553 88
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhccCC
Q 004243 339 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELRAWLFIAADDYESALRDTLALLALESN 417 (766)
Q Consensus 339 ~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 417 (766)
..++++++.+|.++.+|..+|.++...|++++|+..|+++++++|+.. .+..+|.++...|++++|+..|+++++.+|+
T Consensus 54 ~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 54 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999544 4666999999999999999999999999999
Q ss_pred cccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHH
Q 004243 418 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 497 (766)
Q Consensus 418 ~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 497 (766)
+.. ++..+|.++...|++++|. ..+.++++.+|+++.+|..+|.++...|++++|+
T Consensus 134 ~~~------~~~~l~~~~~~~g~~~~A~------------------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 134 LYC------VRSDLGNLLKALGRLEEAK------------------ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp CTH------HHHHHHHHHHTTSCHHHHH------------------HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred cHH------HHHHHHHHHHHccCHHHHH------------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 884 8888999999999999995 4558999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhc
Q 004243 498 RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRC 577 (766)
Q Consensus 498 ~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 577 (766)
..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++
T Consensus 190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------------------------- 236 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH--------------------------------- 236 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC---------------------------------
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC---------------------------------
Confidence 99999999999999999999999999999999999999999999987
Q ss_pred hhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHH
Q 004243 578 PSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 655 (766)
Q Consensus 578 ~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 655 (766)
..++..+|.++...|++++|+..|+++++.+ .+.++..+|.++...|++++|+..|+++++..|++..++.
T Consensus 237 -------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 309 (388)
T 1w3b_A 237 -------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 5668889999999999999999999999984 5689999999999999999999999999999999999999
Q ss_pred HHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCC
Q 004243 656 KRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGD 729 (766)
Q Consensus 656 ~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~ 729 (766)
.++ ..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+. ..++.+|.++..+|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 888 56999999999999999999999999999999999999999999999999999998 556689999988774
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-36 Score=339.17 Aligned_cols=469 Identities=14% Similarity=0.025 Sum_probs=324.1
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCcccc-HhHHHHHHHHhccHHHHHHHHhhhc-cCCCchhHHHHHHHHhc
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYS-LAGLARAKYKVGQQYSAYKLINSII-SEHKPTGWMYQERSLYN 332 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~l~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 332 (766)
....+..++..+.+.|++++|+..|++++...|... ...++..+...|+...+........ .+.++..|..++..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 456678899999999999999999999998776432 2245555555555332222222211 12344555555666655
Q ss_pred cCcH--HHHHHHHHHhcC----------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHH
Q 004243 333 LGRE--KIVDLNYASELD----------------PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAW 393 (766)
Q Consensus 333 ~~~~--A~~~~~~al~~~----------------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~ 393 (766)
.|+. |+..|++..... |.+..+|+.+|.+|.+.|++++|+..|+++++.+|+ ...+..++.
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 242 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS 242 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 5553 555555322111 112455666666666666666666666666655553 222222333
Q ss_pred HHHhhhhHHHHHHH---HHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHH
Q 004243 394 LFIAADDYESALRD---TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 470 (766)
Q Consensus 394 ~~~~~g~~~~A~~~---~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al 470 (766)
++...++.+.+... +.+....++... ...+..++..+...|++++|... +++++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~------------------~~~~~ 299 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFL-----RSLYMLKLNKTSHEDELRRAEDY------------------LSSIN 299 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHH-----HHHHHTTSCTTTTHHHHHHHHHH------------------HHTST
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHH-----HHHHHHHHHHHcCcchHHHHHHH------------------HHHhh
Confidence 33222222111110 111111111000 01122234455555666666422 24444
Q ss_pred HcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHH
Q 004243 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL 549 (766)
Q Consensus 471 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 549 (766)
+. |.++.++..+|..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..++++++..|++ ..+..
T Consensus 300 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 378 (597)
T 2xpi_A 300 GL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA 378 (597)
T ss_dssp TG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred cC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 43 45666777777777777777777777777777777777777777777777777777777777777766766 66666
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc--c--chhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHH
Q 004243 550 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLR--K--GQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGL 623 (766)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~l 623 (766)
++..+...+ ++++|++.|+++++ | ..+|..+|.+|...|++++|+..|+++++.. +..++..+
T Consensus 379 l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 447 (597)
T 2xpi_A 379 VGIYYLCVN-----------KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447 (597)
T ss_dssp HHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred HHHHHHHhc-----------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 666666666 66666666666643 2 4689999999999999999999999999884 56799999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhc------CCCC-chhHHHHHHHHH
Q 004243 624 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQL------DPLR-TYPYRYRAAVLM 692 (766)
Q Consensus 624 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~ 692 (766)
|.++...|++++|++.|+++++..|+++.+|..++ ..|++++|+..|+++++. +|+. ..+|..+|.++.
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888 569999999999999987 5654 689999999999
Q ss_pred hCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q 004243 693 DDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 758 (766)
Q Consensus 693 ~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 758 (766)
..|++++|++.|+++++.+|++ ..+..+|.+|...|++++|++.|+++++++|+++.++..++.+.
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999999987 55669999999999999999999999999999999999887653
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-34 Score=322.33 Aligned_cols=424 Identities=14% Similarity=0.063 Sum_probs=300.2
Q ss_pred chhhHHHHHHHHhhcchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccc-cHhHHHHHHHHhccHHHHHHHHh
Q 004243 234 VSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY-SLAGLARAKYKVGQQYSAYKLIN 312 (766)
Q Consensus 234 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~l~~~~~~~~~a~~~~~~~~ 312 (766)
..+.++..++++....++. ..++.+|.++...|++++|+..|++++...+.. ....++..+...|+..++.....
T Consensus 99 ~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 99 QYKCAAFVGEKVLDITGNP----NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp CHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred CchHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence 4556677777776554433 466789999999999999999999997653322 23367888888888777777666
Q ss_pred hhccCC------------------CchhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHH---------
Q 004243 313 SIISEH------------------KPTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKM--------- 363 (766)
Q Consensus 313 ~~~~~~------------------~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~--------- 363 (766)
+..+.. ....|..+|..+...|+. |+..|+++++.+|++..++..++.++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL 254 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHH
T ss_pred ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHH
Confidence 555543 367899999999999995 999999999999999999888766544
Q ss_pred -----------------------------HcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Q 004243 364 -----------------------------EEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 414 (766)
Q Consensus 364 -----------------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 414 (766)
..|++++|+..|+++++..++...+..+|.++...|++++|+..|+++++.
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 344455555555555444333444444555555555555555555555555
Q ss_pred cCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHH
Q 004243 415 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 494 (766)
Q Consensus 415 ~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 494 (766)
+|++. .++..++.++...|++++|. ..++++++..|+++.++..+|.+|...|+++
T Consensus 335 ~~~~~------~~~~~l~~~~~~~g~~~~A~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 335 DPYNL------DVYPLHLASLHESGEKNKLY------------------LISNDLVDRHPEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp CTTCC------TTHHHHHHHHHHHTCHHHHH------------------HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH
T ss_pred CcccH------HHHHHHHHHHHHhCCHHHHH------------------HHHHHHHhhCcccHHHHHHHHHHHHHhccHH
Confidence 54444 24444444444445444442 2224444445555555555555555555555
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 004243 495 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEA 574 (766)
Q Consensus 495 ~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 574 (766)
+|+..|+++++.+|.+..++..+|.++...|++++|++.|+++++..|++
T Consensus 391 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------ 440 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------------------------------ 440 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC------------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------------------------
Confidence 55555555555555555555555555555555555555555555444443
Q ss_pred HhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHh------
Q 004243 575 LRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK------ 646 (766)
Q Consensus 575 ~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------ 646 (766)
..++..+|.++...|++++|+..|+++++. .++.+|..+|.++...|++++|++.|+++++.
T Consensus 441 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 441 ----------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp ----------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred ----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 577889999999999999999999999987 45678999999999999999999999999988
Q ss_pred ccCC-HHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHH-HHHH
Q 004243 647 AQYS-ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM-LHLR 720 (766)
Q Consensus 647 ~p~~-~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~l 720 (766)
.|++ ..+|..++ ..|++++|+..++++++.+|+++.+|..+|.+|...|++++|++.|+++++++|+++. +..+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4443 56777777 6799999999999999999999999999999999999999999999999999999954 4477
Q ss_pred HHHHH
Q 004243 721 AAFYE 725 (766)
Q Consensus 721 a~~~~ 725 (766)
+.+|.
T Consensus 591 ~~~~~ 595 (597)
T 2xpi_A 591 KRALE 595 (597)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 87764
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=313.32 Aligned_cols=416 Identities=17% Similarity=0.108 Sum_probs=333.2
Q ss_pred HHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhcc
Q 004243 254 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (766)
Q Consensus 254 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (766)
..+.+++.+|..++..|+|++|+..|++++..+|. . ..|..+|.++...
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~------------------------------~~~~~la~~~~~~ 52 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-P------------------------------VFYSNLSACYVSV 52 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-H------------------------------HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-H------------------------------HHHHhHHHHHHHH
Confidence 45778999999999999999999999999998873 2 2344556666666
Q ss_pred CcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHH-HHHHHHHHh---hhhHHHHHHH
Q 004243 334 GRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCL-ELRAWLFIA---ADDYESALRD 407 (766)
Q Consensus 334 ~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~~~~---~g~~~~A~~~ 407 (766)
|+. |+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++...|..... ......... .+...+++..
T Consensus 53 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (514)
T 2gw1_A 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGD 132 (514)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 9999999999999999999999999999999999999999999998833221 111111111 1222222211
Q ss_pred HHHHHh----------------------------------ccCCcc--cccccchhhhHHhHHHHH---HhhhchHhhHH
Q 004243 408 TLALLA----------------------------------LESNYM--MFHGRVSGDHLVKLLNHH---VRSWSPADCWI 448 (766)
Q Consensus 408 ~~~al~----------------------------------~~p~~~--~~~~~~~a~~~l~~~~~~---~~~~~~A~~~~ 448 (766)
++.+.. ..+... .......++...+..... .|++++|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~--- 209 (514)
T 2gw1_A 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD--- 209 (514)
T ss_dssp ------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH---
T ss_pred HHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHH---
Confidence 111100 000000 000113577778877765 78888885
Q ss_pred HhhhhhcccCccccHHHHHHHHH-----c--C-------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhH
Q 004243 449 KLYDRWSSVDDIGSLAVINQMLI-----N--D-------PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 514 (766)
Q Consensus 449 ~~~~~~~~~~~~~~l~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 514 (766)
..++++++ . . |..+.++..+|.++...|++++|+..++++++.+|. +.++
T Consensus 210 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~ 273 (514)
T 2gw1_A 210 ---------------ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSY 273 (514)
T ss_dssp ---------------HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHH
T ss_pred ---------------HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHH
Confidence 33466666 4 3 445678899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHH
Q 004243 515 VYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSI 594 (766)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~ 594 (766)
..+|.++...|++++|+..++++++.+|++ ..++..+|.+
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------~~~~~~l~~~ 313 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLDSNN----------------------------------------SSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTCTTC----------------------------------------THHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcCcCC----------------------------------------HHHHHHHHHH
Confidence 999999999999999999999999988886 5667888899
Q ss_pred HHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHH
Q 004243 595 YVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKN 668 (766)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~ 668 (766)
+...|++++|+..|+++++.. ++.++..+|.++...|++++|+..++++++..|+++.++..+| ..|++++|+.
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999998883 5678999999999999999999999999999999998888888 5689999999
Q ss_pred HHHHHHhcCCCCch------hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHH
Q 004243 669 DLNMATQLDPLRTY------PYRYRAAVLMD---DQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQ 738 (766)
Q Consensus 669 ~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~ 738 (766)
.+++++...|.++. ++..+|.++.. .|++++|+..|+++++.+|++ ..+..+|.++...|++++|+..|+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999998888765 99999999999 999999999999999999988 455689999999999999999999
Q ss_pred HHHccCCCChhHHHHHHHHHH
Q 004243 739 AALCLDPNHMETLDLYNRARD 759 (766)
Q Consensus 739 ~al~~~p~~~~~~~~l~~~~~ 759 (766)
++++++|++++++..+.-.+.
T Consensus 474 ~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 474 ESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHHHHHH
Confidence 999999999998876655443
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=8e-34 Score=316.03 Aligned_cols=410 Identities=14% Similarity=0.091 Sum_probs=319.4
Q ss_pred HHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhc
Q 004243 253 WQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 332 (766)
Q Consensus 253 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (766)
...+.+++.+|..++..|+|++|+..|++++..+|.+.. .|..+|.+++.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------------------~~~~la~~~~~ 71 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV------------------------------FYSNISACYIS 71 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHH------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcH------------------------------HHHHHHHHHHH
Confidence 346788999999999999999999999999999886643 35556666666
Q ss_pred cCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004243 333 LGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLA 410 (766)
Q Consensus 333 ~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 410 (766)
.|++ |+..|+++++.+|+++.+++.+|.++...|++++|+..|+ ++..+|+..... ...+...+...+|+..+++
T Consensus 72 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~ 148 (537)
T 3fp2_A 72 TGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGAS--IEPMLERNLNKQAMKVLNE 148 (537)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------CHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHH--HHHHHHHHHHHHHHHHHHH
Confidence 7775 9999999999999999999999999999999999999996 888887544333 3355566777899999999
Q ss_pred HHhccCCcccccc----cch---------------------------hhhHH--------hHHHHHHhhhchHhhHHHhh
Q 004243 411 LLALESNYMMFHG----RVS---------------------------GDHLV--------KLLNHHVRSWSPADCWIKLY 451 (766)
Q Consensus 411 al~~~p~~~~~~~----~~~---------------------------a~~~l--------~~~~~~~~~~~~A~~~~~~~ 451 (766)
++...|....... ... ....+ +......+.+++|
T Consensus 149 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A------- 221 (537)
T 3fp2_A 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS------- 221 (537)
T ss_dssp HCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH-------
T ss_pred HHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-------
Confidence 9887665442000 000 00011 1112222344444
Q ss_pred hhhcccCccccHHHHHHHHHcCCCChh-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHC
Q 004243 452 DRWSSVDDIGSLAVINQMLINDPGKSF-------LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 524 (766)
Q Consensus 452 ~~~~~~~~~~~l~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~ 524 (766)
+..++++++.+|+++. ++..+|.++...|++++|+..++++++.+|+ +.++..+|.++...
T Consensus 222 -----------~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 222 -----------TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADK 289 (537)
T ss_dssp -----------HHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCS
T ss_pred -----------HHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHh
Confidence 5667899999999865 5778889999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHH
Q 004243 525 GHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQA 604 (766)
Q Consensus 525 g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A 604 (766)
|++++|+..++++++.+|++ +.++..+|.++...|++++|
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~----------------------------------------~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEY----------------------------------------PPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHhccCCCC----------------------------------------HHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999887 55678888888888899999
Q ss_pred HHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCC
Q 004243 605 ENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDP 678 (766)
Q Consensus 605 ~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p 678 (766)
+..|+++++.. .+.++..+|.++...|++++|+..++++++..|++..++..+| ..|++++|+..|+++++..|
T Consensus 330 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99999888873 4678888999999999999999999999988888888888888 56888999999999888877
Q ss_pred CCchh------HHHHHHHHHhC----------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 679 LRTYP------YRYRAAVLMDD----------QKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 679 ~~~~~------~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
.++.. +..+|.++... |++++|+..|+++++.+|++ ..+..+|.++...|++++|+..|++++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 65443 45667888888 99999999999999999988 455588999999999999999999999
Q ss_pred ccCCCChhHHHHH
Q 004243 742 CLDPNHMETLDLY 754 (766)
Q Consensus 742 ~~~p~~~~~~~~l 754 (766)
+++|++++.....
T Consensus 490 ~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 490 ILARTMDEKLQAT 502 (537)
T ss_dssp HHC--CHHHHHHH
T ss_pred HhCCCcHHHHHHH
Confidence 9999988775544
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.5e-30 Score=273.16 Aligned_cols=335 Identities=17% Similarity=0.155 Sum_probs=278.6
Q ss_pred chhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHH
Q 004243 320 PTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFI 396 (766)
Q Consensus 320 ~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~ 396 (766)
+..|+.+|..++..|++ |+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+| .+..+..+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 46788899999999886 99999999999999999999999999999999999999999999988 4445556999999
Q ss_pred hhhhHHHHHHHHHHHHhccC---CcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcC
Q 004243 397 AADDYESALRDTLALLALES---NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND 473 (766)
Q Consensus 397 ~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~ 473 (766)
..|++++|+..|+++++.+| ++.. ++..++.+...
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~------------------------------------ 120 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKE------AESQLVKADEM------------------------------------ 120 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHH------HHHHHHHHHHH------------------------------------
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHH------HHHHHHHHHHH------------------------------------
Confidence 99999999999999999988 5552 33333333221
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHH
Q 004243 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 553 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 553 (766)
..+..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++.+|++
T Consensus 121 ----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------- 187 (359)
T 3ieg_A 121 ----QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN--------- 187 (359)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC---------
T ss_pred ----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------
Confidence 2345678889999999999999999999999999999999999999999999999999999988886
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC--hHHHH----------
Q 004243 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH--TRAHQ---------- 621 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~---------- 621 (766)
+.++..+|.++...|++++|+..|+++++..+ +.++.
T Consensus 188 -------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 188 -------------------------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp -------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHH
Confidence 55678888888899999999999999988743 33332
Q ss_pred --HHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHH
Q 004243 622 --GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 699 (766)
Q Consensus 622 --~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 699 (766)
.+|.++...|++++|+..++++++..|++...+ ..++..+|.++...|++++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------------------------~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT--------------------------VRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH--------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH--------------------------HHHHHHHHHHHHHccCHHH
Confidence 336666667777666666666666655543321 2446789999999999999
Q ss_pred HHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhhhcC
Q 004243 700 AVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQQK 766 (766)
Q Consensus 700 A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 766 (766)
|+..|+++++.+|++ ..++.+|.++...|++++|+..|+++++++|++++++..+.+++..+++.++
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 358 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcc
Confidence 999999999999988 5566899999999999999999999999999999999999999999887653
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.4e-31 Score=286.80 Aligned_cols=347 Identities=14% Similarity=0.106 Sum_probs=262.0
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALE 415 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 415 (766)
+...+.+++..+|+++..++.+|..+...|++++|+..|+++++.+| ++..+..+|.++...|++++|+..|+++++.+
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 34455555666666666666666666666666666666666666665 33334446666666666666666666666666
Q ss_pred CCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCCh---hHHH-----------
Q 004243 416 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS---FLRF----------- 481 (766)
Q Consensus 416 p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~---~~~~----------- 481 (766)
|++. .++..+|.++...|++++|. ..++++++.+|++. .++.
T Consensus 91 p~~~------~~~~~l~~~~~~~g~~~~A~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (450)
T 2y4t_A 91 MDFT------AARLQRGHLLLKQGKLDEAE------------------DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL 146 (450)
T ss_dssp TTCH------HHHHHHHHHHHHTTCHHHHH------------------HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcH------HHHHHHHHHHHHcCCHHHHH------------------HHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH
Confidence 6655 35566666666666666663 33356666666555 4444
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCC
Q 004243 482 -RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLD 560 (766)
Q Consensus 482 -~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~ 560 (766)
.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------- 210 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN---------------- 210 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------
Confidence 446779999999999999999999999999999999999999999999999999999988886
Q ss_pred CCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHH------------HHH
Q 004243 561 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGL------------ARV 626 (766)
Q Consensus 561 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~l------------a~~ 626 (766)
..++..+|.++...|++++|+..|++++... ++..+..+ |.+
T Consensus 211 ------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 211 ------------------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888999999999999999999998874 33444444 999
Q ss_pred HHHhccHHHHHHHHHHHHHhccCCHH----HHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHH
Q 004243 627 YYLKNELKAAYDEMTKLLEKAQYSAS----AFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV 698 (766)
Q Consensus 627 ~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 698 (766)
+...|++++|+..|+++++..|+++. .+..++ ..|++++|+..++++++.+|+++.+|..+|.++...|+++
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 346 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999854 555555 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHH-HHHHHHH------------HHHcC-----CHHHHHHHHHH-HHccCCCC
Q 004243 699 EAVEELSKAIAFKPDLQM-LHLRAAF------------YESIG-----DLTSAIRDSQA-ALCLDPNH 747 (766)
Q Consensus 699 ~A~~~~~~al~~~p~~~~-~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~p~~ 747 (766)
+|+..|+++++++|+++. +..++.+ |...| +.+++.+.|++ +++.+|++
T Consensus 347 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 347 EAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999854 4467743 44455 66788999997 89998875
No 9
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=291.33 Aligned_cols=396 Identities=11% Similarity=0.015 Sum_probs=268.3
Q ss_pred HHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhcc
Q 004243 254 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (766)
Q Consensus 254 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (766)
..+..|..+|.++..+|++++|++.|++|+++.+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~------------------------------------------- 85 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEH------------------------------------------- 85 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-------------------------------------------
Confidence 3466788999999999999999999999987633211
Q ss_pred CcHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---------CHHHHHHHHHHHHh--hhhHH
Q 004243 334 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---------SVDCLELRAWLFIA--ADDYE 402 (766)
Q Consensus 334 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~a~~~~~--~g~~~ 402 (766)
....+|....+|.++|.+|..+|++++|+..+++++++.+ .+..+..+|..+.. .++++
T Consensus 86 ----------~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~ 155 (472)
T 4g1t_A 86 ----------ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNE 155 (472)
T ss_dssp ----------GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHH
T ss_pred ----------ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHH
Confidence 1134567778899999999999999999999999987643 23344557766655 46899
Q ss_pred HHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHH
Q 004243 403 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFR 482 (766)
Q Consensus 403 ~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~ 482 (766)
+|+..|+++++++|+++. ++..++.+....+.+.++ ..++..++++++.+|+++.++..
T Consensus 156 ~A~~~~~kal~~~p~~~~------~~~~~~~~~~~l~~~~~~---------------~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 156 RAKVCFEKALEKKPKNPE------FTSGLAIASYRLDNWPPS---------------QNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHSTTCHH------HHHHHHHHHHHHHHSCCC---------------CCTHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCchHH---------------HHHHHHHHHHhhcCCcchHHHHH
Confidence 999999999999999984 667777776555544322 12367789999999999999999
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhc
Q 004243 483 QSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 557 (766)
Q Consensus 483 la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~ 557 (766)
+|..+.. .|++++|+..+++++..+|..+.++..+|.++...|++++|+..++++++.+|++ .++..+|.++...
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 9877665 4678899999999999999999999999999999999999999999999999999 8888888776533
Q ss_pred CCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHH
Q 004243 558 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKA 635 (766)
Q Consensus 558 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~ 635 (766)
. .... .......+......+.+++|+..|+++++.+ ...++..+|.++...|++++
T Consensus 295 ~-----------~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 295 V-----------FQVM-----------NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp H-----------HHHH-----------HC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred H-----------HHhh-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 2 0000 0111222222333444667777777777663 34567777777777777777
Q ss_pred HHHHHHHHHHhccCCHH---HHHHHh-----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004243 636 AYDEMTKLLEKAQYSAS---AFEKRS-----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 707 (766)
Q Consensus 636 A~~~~~~~l~~~p~~~~---~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 707 (766)
|+..|+++++..|++.. ++...| ..|++++|+..|+++++++|++..... ....+...++++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~ 422 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHH
Confidence 77777777776665443 233333 346777777777777777776543221 223455667777
Q ss_pred HhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHH
Q 004243 708 IAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYN 755 (766)
Q Consensus 708 l~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 755 (766)
+..+|++ ..+..+|.+|...|++++|+++|++|++++|.+|.+...++
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 7778877 55667888888888888888888888888888887766554
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-30 Score=285.99 Aligned_cols=396 Identities=13% Similarity=0.063 Sum_probs=321.9
Q ss_pred chhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCH-HHHHHHHHHHH
Q 004243 320 PTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFI 396 (766)
Q Consensus 320 ~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~ 396 (766)
...|...|..++..|++ |+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+. ..+..+|.++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 35688899999999996 9999999999999 69999999999999999999999999999999954 45666999999
Q ss_pred hhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhh-------------------hhccc
Q 004243 397 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYD-------------------RWSSV 457 (766)
Q Consensus 397 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~-------------------~~~~~ 457 (766)
..|++++|+..|++++...|.+... ....+..... ......+...+..++ .....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDAS-----IEPMLERNLN-KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGG-----THHHHHHHHH-HHHHHHHTTC---------------------------CC
T ss_pred HHhhHHHHHHHHHHHHhcCCCccch-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999999876631 1111111111 111111110000000 00000
Q ss_pred CccccHHHHHHHHHc--------CCCChhHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----c--C-------CCchh
Q 004243 458 DDIGSLAVINQMLIN--------DPGKSFLRFRQSLLLLR---LNCQKAAMRCLRLARN-----H--S-------SSEHE 512 (766)
Q Consensus 458 ~~~~~l~~~~~al~~--------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~-----~--~-------p~~~~ 512 (766)
.....+..+...... .|.++..+..+|..+.. .|++++|+..++++++ . + |.++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 000001111111111 14558889999998887 8999999999999998 5 3 55577
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhH
Q 004243 513 RLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLG 592 (766)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg 592 (766)
++..+|.++...|++++|+..|+++++.+|+ ..++..+|
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-----------------------------------------~~~~~~l~ 277 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-----------------------------------------VNSYIYMA 277 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-----------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-----------------------------------------HHHHHHHH
Confidence 8999999999999999999999999987765 23478889
Q ss_pred HHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHH
Q 004243 593 SIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMA 666 (766)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A 666 (766)
.++...|++++|+..|++++.. ..+.++..+|.++...|++++|+..++++++..|++..++..+| ..|++++|
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999998 45689999999999999999999999999999999999999888 56999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHH---cCCHHHHHHH
Q 004243 667 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-------MLHLRAAFYES---IGDLTSAIRD 736 (766)
Q Consensus 667 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~la~~~~~---~g~~~~A~~~ 736 (766)
+..++++++..|.++.++..+|.++...|++++|+..|+++++..|+++ .+..+|.++.. .|++++|+..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999988774 67799999999 9999999999
Q ss_pred HHHHHccCCCChhHHHHHHHHHHhhhh
Q 004243 737 SQAALCLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 737 ~~~al~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
|+++++++|+++.++..++.+....++
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 999999999999999888887765543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=7e-30 Score=277.33 Aligned_cols=332 Identities=14% Similarity=0.096 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHHccCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhh
Q 004243 368 IRAAISEIDRIIVFKLSV-DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADC 446 (766)
Q Consensus 368 ~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~ 446 (766)
...+...+.+++..+|.. ..+..+|..+...|++++|+..|+++++.+|++. .++..+|.++...|++++|.
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~- 80 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY------IAYYRRATVFLAMGKSKAAL- 80 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHH-
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH------HHHHHHHHHHHHCCCHHHHH-
Confidence 345566777888888844 4455599999999999999999999999999987 48899999999999999984
Q ss_pred HHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---hhHHHH------
Q 004243 447 WIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYE------ 517 (766)
Q Consensus 447 ~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l------ 517 (766)
..+.++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++ .++..+
T Consensus 81 -----------------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 81 -----------------PDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp -----------------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 455899999999999999999999999999999999999999999988 776655
Q ss_pred ------HHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhh
Q 004243 518 ------GWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNL 591 (766)
Q Consensus 518 ------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~l 591 (766)
|.++...|++++|+..|+++++..|++ ..++..+
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------~~~~~~l 183 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD----------------------------------------AELRELR 183 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------------hHHHHHH
Confidence 666999999999999999999988876 5668889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHH------------
Q 004243 592 GSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKR------------ 657 (766)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~------------ 657 (766)
|.+|...|++++|+..|+++++. +.+.++..+|.++...|++++|+..|++++...|++...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 4678999999999999999999999999999999998876554
Q ss_pred h----hhcCHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcC
Q 004243 658 S----EYSDREMAKNDLNMATQLDPLRT----YPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIG 728 (766)
Q Consensus 658 ~----~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g 728 (766)
+ ..|++++|+..|+++++..|.++ .++..+|.++...|++++|+..++++++.+|++ ..+..+|.++...|
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 4 56999999999999999999984 478999999999999999999999999999987 56669999999999
Q ss_pred CHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhh
Q 004243 729 DLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 729 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
++++|+..|+++++++|+++.++..++.++...++
T Consensus 344 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999988776654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=5.2e-30 Score=285.21 Aligned_cols=400 Identities=14% Similarity=0.085 Sum_probs=303.9
Q ss_pred chhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHH
Q 004243 320 PTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFI 396 (766)
Q Consensus 320 ~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~ 396 (766)
...|...|..++..|++ |+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+ +..+..+|.++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45678889999999985 999999999999999999999999999999999999999999999995 455666999999
Q ss_pred hhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHh------------hhhhcccCccccHH
Q 004243 397 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKL------------YDRWSSVDDIGSLA 464 (766)
Q Consensus 397 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~------------~~~~~~~~~~~~l~ 464 (766)
..|++++|+..|+ ++..+|+..... +..+...+........+..+...... ............+.
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDGAS--IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHTCHHHHHHHHH-HHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HcCCHHHHHHHHH-HHhcCCCCChHH--HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999996 888888876411 11122222222222222222100000 00000000000000
Q ss_pred HHHHHHHcCCCChhHHHHHHHHH--------HhcCCHHHHHHHHHHHHhcCCCchh-------hHHHHHHHHHHCCCHHH
Q 004243 465 VINQMLINDPGKSFLRFRQSLLL--------LRLNCQKAAMRCLRLARNHSSSEHE-------RLVYEGWILYDTGHREE 529 (766)
Q Consensus 465 ~~~~al~~~p~~~~~~~~la~~~--------~~~g~~~~A~~~~~~a~~~~p~~~~-------~~~~lg~~~~~~g~~~~ 529 (766)
.+.+....+|........++..+ ...|++++|+..++++++.+|+++. ++..+|.++...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 00000111122122333333332 2345889999999999999998755 57778889999999999
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHH
Q 004243 530 ALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYI 609 (766)
Q Consensus 530 A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~ 609 (766)
|+..|+++++.+|+. .++..+|.++...|++++|+..|+
T Consensus 262 A~~~~~~~~~~~~~~-----------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 262 AQVLLQESINLHPTP-----------------------------------------NSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHHHHHHCCCH-----------------------------------------HHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCc-----------------------------------------hHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999887762 457788999999999999999999
Q ss_pred HHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchh
Q 004243 610 NALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYP 683 (766)
Q Consensus 610 ~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~ 683 (766)
++++. +.+.++..+|.++...|++++|+..++++++..|++..++..+| ..|++++|+..++++++.+|+++.+
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 380 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99998 45689999999999999999999999999999999999999988 5799999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCC
Q 004243 684 YRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-------QMLHLRAAFYESI----------GDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 684 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~ 746 (766)
+..+|.++...|++++|+..|+++++..|++ ..++.+|.++... |++++|+..|+++++.+|+
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999987654 2245778999999 9999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhh
Q 004243 747 HMETLDLYNRARDQASH 763 (766)
Q Consensus 747 ~~~~~~~l~~~~~~~~~ 763 (766)
++.++..++.+....++
T Consensus 461 ~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999888776543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=1.6e-28 Score=257.70 Aligned_cols=330 Identities=13% Similarity=0.125 Sum_probs=266.8
Q ss_pred HHHHHHHHhcc---HHHHHHHHhhhccCCCchhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Q 004243 293 GLARAKYKVGQ---QYSAYKLINSIISEHKPTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQ 367 (766)
Q Consensus 293 ~l~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~ 367 (766)
.++..+...|+ +...+.++....| ..+..+..+|.+++..|+. |+..|+++++.+|+++.++..+|.++...|+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC
Confidence 45556666665 7777777777666 6688999999999999996 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCC---CHHHHH-HHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhch
Q 004243 368 IRAAISEIDRIIVFKL---SVDCLE-LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSP 443 (766)
Q Consensus 368 ~~~A~~~~~~al~~~~---~~~~~~-~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~ 443 (766)
+++|+..|+++++..| +..... .++.++.. .....++.++...|++++
T Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------------~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM----------------------------QRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHccCHHH
Confidence 9999999999999998 433332 24443221 123445667777788888
Q ss_pred HhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Q 004243 444 ADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 523 (766)
Q Consensus 444 A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~ 523 (766)
|. ..+.++++..|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++..
T Consensus 139 A~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 139 AI------------------TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HH------------------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred HH------------------HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 84 556899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHH
Q 004243 524 TGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLD 602 (766)
Q Consensus 524 ~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~ 602 (766)
.|++++|+..++++++.+|++ ..+....... .......+|.++...|+++
T Consensus 201 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~a~~~~~~~~~~ 251 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-----------------------------KLNKLIESAEELIRDGRYT 251 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHhhCccchHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999998 4333222211 0234567799999999999
Q ss_pred HHHHHHHHHHccCCh------HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhc
Q 004243 603 QAENCYINALDIKHT------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQL 676 (766)
Q Consensus 603 ~A~~~~~~al~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~ 676 (766)
+|+..|+++++..+. .++..+|.++...|++++|+..++++++..
T Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------------------------- 302 (359)
T 3ieg_A 252 DATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME----------------------------- 302 (359)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------------
Confidence 999999999998433 346778999999999888888877777654
Q ss_pred CCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHcC
Q 004243 677 DPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQML-HLRAAFYESIG 728 (766)
Q Consensus 677 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~la~~~~~~g 728 (766)
|+++.++..+|.++...|++++|+..|+++++++|+++.. ..++.++...+
T Consensus 303 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 303 -PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 4556667778888888888888888888888888887443 36666665543
No 14
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.97 E-value=9.8e-31 Score=241.49 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=137.7
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
.+....++++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+...+|.+ +++++++|+.+|+|||||++.
T Consensus 23 ~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~~l~~~Yt~~~~- 99 (172)
T 3htm_A 23 DELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP- 99 (172)
T ss_dssp HHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEE--CSSCHHHHHHHHHHHHHSCCT-
T ss_pred HHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEe--cCCCHHHHHHHHHHHhCCCCC-
Confidence 45566778899999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccc
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK 196 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~ 196 (766)
++.+++.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.+++.+++
T Consensus 100 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~ 172 (172)
T 3htm_A 100 NLDKMADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172 (172)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred CcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999988753
No 15
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.97 E-value=1.3e-30 Score=256.90 Aligned_cols=154 Identities=13% Similarity=0.166 Sum_probs=137.5
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCc--cCCCCeEEecCCCCCHHHHHHHHHHhhcCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRV 120 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~ 120 (766)
.+..+.++++.+|||+|+|+|++|+|||.||+++|+||++||+++|. |+...+|++ +++++++|+.+|+|+|||++
T Consensus 20 ~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l--~~v~~~~f~~ll~~~Yt~~~ 97 (256)
T 3hve_A 20 RALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIEL--EGISVMVMREILDYIFSGQI 97 (256)
T ss_dssp HHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEEC--SSCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEe--CCCCHHHHHHHHhhccCCCC
Confidence 44567889999999999999999999999999999999999999988 667789999 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccccccc
Q 004243 121 DLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (766)
Q Consensus 121 ~~~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~l 200 (766)
. ++.+++.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.++..+++|.+|
T Consensus 98 ~-i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L 175 (256)
T 3hve_A 98 R-LNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA-AENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLEL 175 (256)
T ss_dssp C-CC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC-SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSS
T ss_pred c-ccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCC-HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcC
Confidence 9 9999999999999999999999999999999999 9999999999999999999999999999999999999999987
No 16
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.5e-28 Score=262.26 Aligned_cols=388 Identities=11% Similarity=0.029 Sum_probs=252.4
Q ss_pred HHHHhhhhhhhcccchhhHHHHHHHHhhcch------hhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhH
Q 004243 220 LYYFLSQVAMEKDRVSNTTVMLLERLGECST------ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAG 293 (766)
Q Consensus 220 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 293 (766)
.|..++.+.... ...+.++..+++..+..+ ..+..+.++.++|.+|...|++++|+.+|++++++.+.....
T Consensus 53 ~yn~Lg~~~~~~-G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~- 130 (472)
T 4g1t_A 53 MCNLLAYLKHLK-GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP- 130 (472)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS-
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc-
Confidence 455566554433 345667766666655422 234567789999999999999999999999998874432211
Q ss_pred HHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCcHHHHHHHHHHhcCCCCchHHHHHHHHHHHc--CCHHHH
Q 004243 294 LARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEE--GQIRAA 371 (766)
Q Consensus 294 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--g~~~~A 371 (766)
..+..+.++..+|.++... +++++|
T Consensus 131 -----------------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~y~~A 157 (472)
T 4g1t_A 131 -----------------------------------------------------YRIESPELDCEEGWTRLKCGGNQNERA 157 (472)
T ss_dssp -----------------------------------------------------SCCCCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred -----------------------------------------------------cchhhHHHHHHHHHHHHHHccccHHHH
Confidence 1122333444444444333 346666
Q ss_pred HHHHHHHHccCCC-HHHHHHHHHHHHh---hhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHH----Hhhhch
Q 004243 372 ISEIDRIIVFKLS-VDCLELRAWLFIA---ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH----VRSWSP 443 (766)
Q Consensus 372 ~~~~~~al~~~~~-~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~----~~~~~~ 443 (766)
+..|+++++++|+ +..+..+|.++.. .+++++|+..|+++++++|++.. ++..++..... .+.+++
T Consensus 158 ~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~------~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 158 KVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY------LKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH------HHHHHHHHHHHCC------CH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH------HHHHHHHHHHHHHhhhhHHHH
Confidence 6666666666663 3333335555433 34556777788888888887773 44455544332 344445
Q ss_pred HhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Q 004243 444 ADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 523 (766)
Q Consensus 444 A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~ 523 (766)
| +..+++++..+|..+.++..+|.+|...|++++|+..++++++.+|+++.++..+|.+|..
T Consensus 232 a------------------~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 232 G------------------EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp H------------------HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred H------------------HHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 5 4556899999999999999999999999999999999999999999999999999998865
Q ss_pred CCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc--c--chhHHhhHHHHHHhC
Q 004243 524 TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR--K--GQALNNLGSIYVECG 599 (766)
Q Consensus 524 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~--~~~~~~lg~~~~~~g 599 (766)
.+....+.... .........+.+++|+..+++++. | ..++..+|.++...|
T Consensus 294 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 294 KVFQVMNLREN-------------------------GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHhhhHHHH-------------------------HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 32211111000 001111122244445555554433 1 578899999999999
Q ss_pred CHHHHHHHHHHHHccCCh-----HHHHHHHHH-HHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHH
Q 004243 600 KLDQAENCYINALDIKHT-----RAHQGLARV-YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMA 673 (766)
Q Consensus 600 ~~~~A~~~~~~al~~~~~-----~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~a 673 (766)
++++|+.+|++++++.+. ..+..+|.+ +...|++++|+..|++++++.|++...... ...+...++++
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------~~~l~~~~~~~ 422 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------KDKLQKIAKMR 422 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH------HHHHHHHHHHH
Confidence 999999999999988432 245667754 457899999999999999999998764332 24566778899
Q ss_pred HhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHH
Q 004243 674 TQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQML 717 (766)
Q Consensus 674 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 717 (766)
+..+|+++.+|..+|.+|...|++++|+++|++|+++.|.++..
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 99999999999999999999999999999999999998887543
No 17
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.96 E-value=6.4e-30 Score=255.13 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=139.2
Q ss_pred ccccccCCCCCCCceEEEEc---CeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCC------CCCHHHHHHHHH
Q 004243 43 VEKFVCLSLEEDDSVTFCVR---DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD------GVSVEGLRAVEV 113 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~---~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~------~~~~~~~~~~l~ 113 (766)
....+.+.++.+|||+|+|+ |++|+|||+||+++|+||++||+++|+|+..++|+| + ++++++|+.+|+
T Consensus 21 ~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l--~~~~~~~~v~~~~f~~ll~ 98 (279)
T 3i3n_A 21 WRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEM--RKWSSEPGPEPDTVEAVIE 98 (279)
T ss_dssp HHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEEC--CCCSSTTCSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEe--ccccccCCCCHHHHHHHHH
Confidence 34556778899999999998 999999999999999999999999999999999999 6 899999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcC
Q 004243 114 YTRTSRVDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLY 193 (766)
Q Consensus 114 ~~yt~~~~~~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~ 193 (766)
|+|||++. ++.+++.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|+++.|.+.|.+||.+||.+++.
T Consensus 99 ~~Ytg~~~-i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~-~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~ 176 (279)
T 3i3n_A 99 YMYTGRIR-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH-LSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQ 176 (279)
T ss_dssp HHHHSEEE-EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTT
T ss_pred hhCcCCcc-cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC-cchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 9999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccccccc
Q 004243 194 NPKVMKI 200 (766)
Q Consensus 194 ~~~f~~l 200 (766)
+++|.+|
T Consensus 177 ~~~f~~L 183 (279)
T 3i3n_A 177 DEEFYTL 183 (279)
T ss_dssp SSGGGGS
T ss_pred CcChhcC
Confidence 9999987
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-26 Score=240.41 Aligned_cols=296 Identities=13% Similarity=0.020 Sum_probs=246.2
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccc
Q 004243 342 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMM 420 (766)
Q Consensus 342 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 420 (766)
...+...|+++..+..+|..+...|++++|+..++++++.+|. ...+..++.++...|++++|+..++++++.+|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~- 90 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP- 90 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH-
Confidence 3456667888899999999999999999999999999999984 44455689999999999999999999999999988
Q ss_pred ccccchhhhHHhHHHHHHh-hhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004243 421 FHGRVSGDHLVKLLNHHVR-SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRC 499 (766)
Q Consensus 421 ~~~~~~a~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 499 (766)
.++..+|.++...+ .+++|. ..+.++++.+|.++.++..+|.++...|++++|+..
T Consensus 91 -----~~~~~l~~~~~~~~~~~~~A~------------------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 91 -----VSWFAVGCYYLMVGHKNEHAR------------------RYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp -----HHHHHHHHHHHHSCSCHHHHH------------------HHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----HHHHHHHHHHHHhhhhHHHHH------------------HHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 48888999999998 888884 455899999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchh
Q 004243 500 LRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 579 (766)
Q Consensus 500 ~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 579 (766)
++++++..|.+..++..+|.++...|++++|+..++++++.+|++
T Consensus 148 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----------------------------------- 192 (330)
T 3hym_B 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED----------------------------------- 192 (330)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-----------------------------------
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-----------------------------------
Confidence 999999999999999999999999999999999999999998886
Q ss_pred hccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-----------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Q 004243 580 DGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-----------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 648 (766)
Q Consensus 580 ~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 648 (766)
..++..+|.++...|++++|+..++++++.. .+.++..+|.++...|++++|+..++++++..
T Consensus 193 -----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~- 266 (330)
T 3hym_B 193 -----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI- 266 (330)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred -----hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-
Confidence 5668888999999999999999999998862 24688999999999999888888877777654
Q ss_pred CCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH-HH
Q 004243 649 YSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFY-ES 726 (766)
Q Consensus 649 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~-~~ 726 (766)
|+++.++..+|.++...|++++|+..|+++++++|++ ..+..+|.++ ..
T Consensus 267 -----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 267 -----------------------------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317 (330)
T ss_dssp -----------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTT
T ss_pred -----------------------------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence 4556677777888888888888888888888888877 4444777777 44
Q ss_pred cCCHH
Q 004243 727 IGDLT 731 (766)
Q Consensus 727 ~g~~~ 731 (766)
.|+.+
T Consensus 318 ~g~~~ 322 (330)
T 3hym_B 318 IGDSE 322 (330)
T ss_dssp TTC--
T ss_pred hCchh
Confidence 55543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.7e-26 Score=239.11 Aligned_cols=291 Identities=13% Similarity=0.052 Sum_probs=250.6
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccH
Q 004243 384 SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL 463 (766)
Q Consensus 384 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l 463 (766)
++..+..+|..++..|++++|+..|+++++.+|.+.. ++..++.++...|++++|.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~~~~~~~~~~~~~~A~------------------ 76 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS------CLPVHIGTLVELNKANELF------------------ 76 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------THHHHHHHHHHHTCHHHHH------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh------hHHHHHHHHHHhhhHHHHH------------------
Confidence 5556666999999999999999999999999998874 7777888888888888884
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcccc
Q 004243 464 AVINQMLINDPGKSFLRFRQSLLLLRLN-CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 542 (766)
Q Consensus 464 ~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 542 (766)
..+.++++.+|.++.++..+|.++...| ++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 77 YLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp HHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 4458888899999999999999999999 899999999999999999999999999999999999999999999998887
Q ss_pred chHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHH
Q 004243 543 TFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAH 620 (766)
Q Consensus 543 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 620 (766)
+. ...+..+|.++...|++++|+..|+++++. +++.++
T Consensus 157 ~~----------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 196 (330)
T 3hym_B 157 GC----------------------------------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196 (330)
T ss_dssp TC----------------------------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred cc----------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHH
Confidence 75 556777999999999999999999999888 356788
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHH
Q 004243 621 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA 700 (766)
Q Consensus 621 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 700 (766)
..+|.++...|++++|+..++++++..|..... ...|..+.++..+|.++...|++++|
T Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE---------------------VTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS---------------------CTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc---------------------ccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 889999999999999998888888775532110 01256688999999999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 004243 701 VEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 759 (766)
Q Consensus 701 ~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 759 (766)
+..|+++++.+|++ ..+..+|.++...|++++|+..|+++++++|+++.++..++.+..
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 99999999999988 566699999999999999999999999999999999999988764
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=3.8e-27 Score=248.29 Aligned_cols=325 Identities=12% Similarity=0.043 Sum_probs=248.0
Q ss_pred HcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhccCCcccccccchhhhHHhHHHHHHhhhc
Q 004243 364 EEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALR-DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 442 (766)
Q Consensus 364 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~ 442 (766)
..+.++.+...++.+.+..| .++...|++++|+. .|++++...|+++.. ...++..+|..+...|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDA---------EAHPWLSDYDDLTSATYDKGYQFEEENPLR--DHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTT--TCSSHHHHHHHHHHTTCHH
T ss_pred CcccHHHHHHHHHHHHcCCc---------hhhHHHHHHHHHHhhhhhHHHhcCCCCccc--chHHHHHHHHHHHHCCCHH
Confidence 44455555555555554443 24556688899998 888888888877621 1246778888888888888
Q ss_pred hHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHH
Q 004243 443 PADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 522 (766)
Q Consensus 443 ~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~ 522 (766)
+|. ..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 82 ~A~------------------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 82 NAV------------------LLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp HHH------------------HHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHH------------------HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 884 45588888999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCH
Q 004243 523 DTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKL 601 (766)
Q Consensus 523 ~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~ 601 (766)
..|++++|+..++++++..|++ ..+...+... ....+...+..+|.++ ..|++
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~-~~~~~ 197 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGA-------------------------GGAGLGPSKRILGSLL-SDSLF 197 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------------CTTHHHH-HHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHh-------------------------hhhcccHHHHHHHHHh-hcccH
Confidence 9999999999999999999987 3222111110 0011233445677777 99999
Q ss_pred HHHHHHHHHHHccC----ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHH
Q 004243 602 DQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMA 673 (766)
Q Consensus 602 ~~A~~~~~~al~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~a 673 (766)
++|+..|+++++.. .+.++..+|.++...|++++|+..+++++...|+++.++..+| ..|++++|+..|+++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999984 3578999999999999999999999999999999999999988 579999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 674 TQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL------------QMLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 674 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
++.+|.++.++..+|.++...|++++|+..|++++++.|++ ..+..+|.++..+|++++|...+++++
T Consensus 278 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999999999999999999999999999999998766 456689999999999999999998776
Q ss_pred cc
Q 004243 742 CL 743 (766)
Q Consensus 742 ~~ 743 (766)
+.
T Consensus 358 ~~ 359 (368)
T 1fch_A 358 ST 359 (368)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 21
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.95 E-value=1.9e-28 Score=249.30 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=131.9
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
.+..+.++++.++||+|.|+|++|+|||.|||++|+||++||.++|.|+...+|+| +++++++|+.+|+|||||++.
T Consensus 163 ~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~~L~~iYt~~~~- 239 (312)
T 3hqi_A 163 DELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP- 239 (312)
T ss_dssp HHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEE--CSSCHHHHHHHHHHHHHSCCT-
T ss_pred HHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEe--cCCCHHHHHHHHHhhcCCCCC-
Confidence 33556678899999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccc
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK 196 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~ 196 (766)
++.+++.+||.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++..|++.|.+||..||.+++++++
T Consensus 240 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~-~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g 312 (312)
T 3hqi_A 240 NLDKMADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312 (312)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred ChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 8889999999999999999999999999999999 999999999999999999999999999999999988763
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=1.4e-24 Score=237.68 Aligned_cols=363 Identities=12% Similarity=-0.050 Sum_probs=209.5
Q ss_pred CCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHh----hhhHHHHHHHHHHHHhccCCccc
Q 004243 349 PTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIA----ADDYESALRDTLALLALESNYMM 420 (766)
Q Consensus 349 p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 420 (766)
+.++.+++.+|.+|.. .+++++|+..|+++.+. .++...+.+|.+|.. .+++++|+..|+++.+. +++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~- 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP- 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH-
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH-
Confidence 3455555555555555 55555555555555543 234444445555555 55555555555555442 222
Q ss_pred ccccchhhhHHhHHHHH----HhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHh----cCC
Q 004243 421 FHGRVSGDHLVKLLNHH----VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR----LNC 492 (766)
Q Consensus 421 ~~~~~~a~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 492 (766)
.+...+|.++.. .+++++|..+ |+++.+. +++.+++.+|.+|.. .++
T Consensus 112 -----~a~~~Lg~~y~~g~g~~~~~~~A~~~------------------~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 112 -----QAQQNLGVMYHEGNGVKVDKAESVKW------------------FRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp -----HHHHHHHHHHHHTSSSCCCHHHHHHH------------------HHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred -----HHHHHHHHHHHcCCCCCCCHHHHHHH------------------HHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 244455555544 3444444322 2444332 345555555555554 555
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHHHHHHHHH----CCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHH
Q 004243 493 QKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVI 568 (766)
Q Consensus 493 ~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 568 (766)
+++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++..+ ..++..++..+....-...
T Consensus 167 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~y~~g~g~~~------ 237 (490)
T 2xm6_A 167 YVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD-ELGQLHLADMYYFGIGVTQ------ 237 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCC------
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCCCC------
Confidence 55555555555554 345555555555555 5555555555555554321 1444555554443111111
Q ss_pred HHHHHHHhchhhccc--cchhHHhhHHHHHH----hCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh-----ccHHHHH
Q 004243 569 QLLEEALRCPSDGLR--KGQALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLARVYYLK-----NELKAAY 637 (766)
Q Consensus 569 ~~~~~A~~~~~~~l~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~-----g~~~~A~ 637 (766)
++++|+..++++.+ .+.+++.+|.+|.. .+++++|+.+|+++.+.+++.+++.+|.++... +++++|+
T Consensus 238 -~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 238 -DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp -CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 44445555544433 24566677777766 677777777777777776777777777777766 6777777
Q ss_pred HHHHHHHHhccCCHHHHHHHhhh----c---CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----CCCHHHHHHHHHH
Q 004243 638 DEMTKLLEKAQYSASAFEKRSEY----S---DREMAKNDLNMATQLDPLRTYPYRYRAAVLMD----DQKEVEAVEELSK 706 (766)
Q Consensus 638 ~~~~~~l~~~p~~~~~~~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 706 (766)
..|+++++. .++.++..+|.. | ++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|++
T Consensus 317 ~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 317 SWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 777777654 345555555521 2 567777777777765 456777777777777 6777777777777
Q ss_pred HHhcCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCC---ChhHHHHHH
Q 004243 707 AIAFKPDLQMLHLRAAFYES----IGDLTSAIRDSQAALCLDPN---HMETLDLYN 755 (766)
Q Consensus 707 al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~l~ 755 (766)
+++.. +...++.+|.+|.. .+++++|+.+|+++++.+|+ ++.+...++
T Consensus 393 A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~ 447 (490)
T 2xm6_A 393 AAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEK 447 (490)
T ss_dssp HHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHH
Confidence 77653 23555577777776 67777777777777777743 555555443
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=1.5e-24 Score=237.56 Aligned_cols=387 Identities=12% Similarity=0.001 Sum_probs=314.3
Q ss_pred CCchhHHHHHHHHhc----cCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCHHH
Q 004243 318 HKPTGWMYQERSLYN----LGRE--KIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDC 387 (766)
Q Consensus 318 ~~~~~~~~~~~~~~~----~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 387 (766)
.++.+++.+|..++. .++. |+..|+++.+. +++.+++.+|.+|.. .+++++|+..|+++.+.. ++..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHH
Confidence 445556666666655 4443 99999999876 678999999999999 999999999999998754 5667
Q ss_pred HHHHHHHHHh----hhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHH----HhhhchHhhHHHhhhhhcccCc
Q 004243 388 LELRAWLFIA----ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH----VRSWSPADCWIKLYDRWSSVDD 459 (766)
Q Consensus 388 ~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 459 (766)
.+.+|.+|.. .+++++|+..|+++.+. +++ .+...+|.++.. .+++++|.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~------~a~~~Lg~~y~~g~g~~~d~~~A~-------------- 171 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRD------SGQQSMGDAYFEGDGVTRDYVMAR-------------- 171 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH------HHHHHHHHHHHHTSSSCCCHHHHH--------------
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH------HHHHHHHHHHHcCCCCCCCHHHHH--------------
Confidence 7779999988 88999999999999764 344 478888988876 56677774
Q ss_pred cccHHHHHHHHHcCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH----CCCHHHHH
Q 004243 460 IGSLAVINQMLINDPGKSFLRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEAL 531 (766)
Q Consensus 460 ~~~l~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~----~g~~~~A~ 531 (766)
..|+++++. +++.++..+|.+|.. .+++++|+..|+++.+. .++.+++.+|.++.. .+++++|+
T Consensus 172 ----~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 172 ----EWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp ----HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred ----HHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 444777775 578999999999998 89999999999999876 467899999999997 89999999
Q ss_pred HHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc--cchhHHhhHHHHHHh-----CCHHHH
Q 004243 532 SRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR--KGQALNNLGSIYVEC-----GKLDQA 604 (766)
Q Consensus 532 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~lg~~~~~~-----g~~~~A 604 (766)
.+|+++++..+ ..++..++..+..-..... ++++|+..|+++.+ .+.+++.+|.+|... +++++|
T Consensus 244 ~~~~~a~~~~~-~~a~~~lg~~y~~g~~~~~-------d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 244 VLFSQSAEQGN-SIAQFRLGYILEQGLAGAK-------EPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHTTTC-HHHHHHHHHHHHHTTTSSC-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 99999987532 2677888888776221122 67788888888765 468899999999998 999999
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhccCCHHHHHHHh----h----hcCHHHHHHHHHHH
Q 004243 605 ENCYINALDIKHTRAHQGLARVYYLKN---ELKAAYDEMTKLLEKAQYSASAFEKRS----E----YSDREMAKNDLNMA 673 (766)
Q Consensus 605 ~~~~~~al~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~~----~----~~~~~~A~~~~~~a 673 (766)
+.+|+++++.+++.+++++|.+|...| ++++|+..|+++++. .++.++..+| . .+++++|+.+|+++
T Consensus 316 ~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 316 ISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999866 899999999999987 6788888888 2 47899999999999
Q ss_pred HhcCCCCchhHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCC---h-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004243 674 TQLDPLRTYPYRYRAAVLMD----DQKEVEAVEELSKAIAFKPD---L-QMLHLRAAFYESIGDLTSAIRDSQAALCLDP 745 (766)
Q Consensus 674 l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 745 (766)
.+.. ++.++.++|.+|.. .+++++|+.+|+++++..|+ + ....++|.++.. +.+.|.+..++.++..|
T Consensus 394 ~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 394 AEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYA 469 (490)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHC
T ss_pred HhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHH
Confidence 9864 68999999999998 89999999999999999864 4 344467776653 45666666666666667
Q ss_pred CChhHH
Q 004243 746 NHMETL 751 (766)
Q Consensus 746 ~~~~~~ 751 (766)
++..+.
T Consensus 470 ~~~~~~ 475 (490)
T 2xm6_A 470 PEAWAR 475 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=1.3e-25 Score=236.58 Aligned_cols=297 Identities=15% Similarity=0.108 Sum_probs=239.1
Q ss_pred HHhhcccHHHHHH-HHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCcH--HHHHH
Q 004243 265 VMFEREEYKDACY-YFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGRE--KIVDL 341 (766)
Q Consensus 265 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--A~~~~ 341 (766)
.+...|+|++|+. .|++++...|.+.. .....++.+|..++..|+. |+..|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPL--------------------------RDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTT--------------------------TTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcc--------------------------cchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4445566666666 66666655443321 1245677888888888885 99999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccc
Q 004243 342 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMM 420 (766)
Q Consensus 342 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 420 (766)
+++++.+|+++.++..+|.++...|++++|+..|+++++.+| ++..+..+|.++...|++++|+..+++++...|++..
T Consensus 88 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 167 (368)
T 1fch_A 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 167 (368)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 999999999999999999999999999999999999999999 4555666999999999999999999999999999885
Q ss_pred cccc----------chhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCC--ChhHHHHHHHHHH
Q 004243 421 FHGR----------VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRFRQSLLLL 488 (766)
Q Consensus 421 ~~~~----------~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~--~~~~~~~la~~~~ 488 (766)
.... ......++.++ ..|++++|. ..++++++.+|. .+.++..+|.++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~------------------~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 168 LVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVK------------------ELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp GCC---------------CTTHHHH-HHHHHHHHH------------------HHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHH------------------HHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 2210 01111455565 778888874 455889999999 7899999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHH
Q 004243 489 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVI 568 (766)
Q Consensus 489 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 568 (766)
..|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------ 284 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY------------------------ 284 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------------------
Confidence 99999999999999999999999999999999999999999999999999988876
Q ss_pred HHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CC-----------hHHHHHHHHHHHHhccHHH
Q 004243 569 QLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KH-----------TRAHQGLARVYYLKNELKA 635 (766)
Q Consensus 569 ~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~-----------~~~~~~la~~~~~~g~~~~ 635 (766)
..++..+|.++...|++++|+..|++++++ +. +.+|..+|.++...|++++
T Consensus 285 ----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 285 ----------------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp ----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred ----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 566888999999999999999999999987 23 5789999999999999999
Q ss_pred HHHHHHHHHHh
Q 004243 636 AYDEMTKLLEK 646 (766)
Q Consensus 636 A~~~~~~~l~~ 646 (766)
|...+.++++.
T Consensus 349 A~~~~~~~l~~ 359 (368)
T 1fch_A 349 YGAADARDLST 359 (368)
T ss_dssp HHHHHTTCHHH
T ss_pred HHHhHHHHHHH
Confidence 99888877654
No 25
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.94 E-value=2.8e-28 Score=217.90 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=100.5
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
.+....++++.+|||+|+|+|+.|+|||.||+++|+||++||+++|.|+...+|.+ +++++++|+.+|+|||||++.
T Consensus 14 ~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Y~~~~~- 90 (145)
T 4eoz_A 14 DELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI--NDVEPEVFKEMMCFIYTGKAP- 90 (145)
T ss_dssp HHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEE--CSSCHHHHHHHHHHHHHSCCT-
T ss_pred HHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEe--cCCCHHHHHHHHHhhccCccC-
Confidence 44566778899999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHH
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVA 178 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~ 178 (766)
++.+++.+++.+|++|+++.|+..|+++|.+.++ ++||+.++.+|..|++++|++
T Consensus 91 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~-~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 91 NLDKMADDLLAAADKYALERLKVMCEDALCSNLS-VENAAEILILADLHSADQLKT 145 (145)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHCC----------------------------
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHhcC
Confidence 9999999999999999999999999999999999 999999999999999999874
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=6.2e-26 Score=236.38 Aligned_cols=251 Identities=14% Similarity=0.051 Sum_probs=229.6
Q ss_pred HHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCC-HHHHHHHHHHHHccccchHHH
Q 004243 469 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH-REEALSRAEKSISIERTFEAF 547 (766)
Q Consensus 469 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 547 (766)
++..+|+++.++..+|.++...|++++|+..++++++++|++..+|+.+|.++...|+ +++|+..|+++++++|++
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~--- 165 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--- 165 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC---
Confidence 4567888899999999999999999999999999999999999999999999999997 999999999999999998
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHH
Q 004243 548 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLAR 625 (766)
Q Consensus 548 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~ 625 (766)
..+|+++|.++...|++++|+..|+++++++ +..+|+++|.
T Consensus 166 -------------------------------------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~ 208 (382)
T 2h6f_A 166 -------------------------------------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208 (382)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHH
Confidence 6778999999999999999999999999994 6689999999
Q ss_pred HHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----h-hcCHHHH-----HHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 004243 626 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----E-YSDREMA-----KNDLNMATQLDPLRTYPYRYRAAVLMDDQ 695 (766)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g 695 (766)
++...|++++|+..|+++++++|++..+|..+| . .|..++| +..|++++.++|++..+|.++|.++...|
T Consensus 209 ~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999 3 3443677 59999999999999999999999999988
Q ss_pred --CHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcC--------C-HHHHHHHHHHH-HccCCCChhHHHHHHHHHHh
Q 004243 696 --KEVEAVEELSKAIAFKPDLQ-MLHLRAAFYESIG--------D-LTSAIRDSQAA-LCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 696 --~~~~A~~~~~~al~~~p~~~-~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~ 760 (766)
++++|++.++++ +.+|++. .+..+|.+|..+| + +++|++.|+++ ++++|.....|..+.+....
T Consensus 289 ~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 289 LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 699999999998 8899884 4558999999975 3 59999999999 99999999999888776553
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=3.2e-23 Score=229.36 Aligned_cols=406 Identities=11% Similarity=-0.054 Sum_probs=292.7
Q ss_pred HHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhcc
Q 004243 254 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (766)
Q Consensus 254 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (766)
....++..++. +...|++++|...|+++++..|.+... |...+......
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~------------------------------w~~~~~~~~~~ 59 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRF------------------------------WKLYIEAEIKA 59 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHH------------------------------HHHHHHHHHHT
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHH------------------------------HHHHHHHHHhc
Confidence 34456777777 477899999999999999998876544 33333333334
Q ss_pred Cc--HHHHHHHHHHhcCCCCchHHHHHHH-HHHHcCCHHHHHH----HHHHHHcc---CCC-HHHHHHHHHHHHh-----
Q 004243 334 GR--EKIVDLNYASELDPTLSFPYKYRAV-AKMEEGQIRAAIS----EIDRIIVF---KLS-VDCLELRAWLFIA----- 397 (766)
Q Consensus 334 ~~--~A~~~~~~al~~~p~~~~~~~~~a~-~~~~~g~~~~A~~----~~~~al~~---~~~-~~~~~~~a~~~~~----- 397 (766)
++ .|...|++++...| +...|...+. .....|++++|.+ .|++++.. +|. ...|...+.....
T Consensus 60 ~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~ 138 (530)
T 2ooe_A 60 KNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVG 138 (530)
T ss_dssp TCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCS
T ss_pred CCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcc
Confidence 44 38888888888888 5667777775 3345677766655 66766543 332 3333335555444
Q ss_pred ----hhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHH-------------HHHhhhchHhhHHHhhhhhcccCcc
Q 004243 398 ----ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN-------------HHVRSWSPADCWIKLYDRWSSVDDI 460 (766)
Q Consensus 398 ----~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~-------------~~~~~~~~A~~~~~~~~~~~~~~~~ 460 (766)
.|++++|...|+++++ .|.+.. ...+....... ...+.+..|......
T Consensus 139 ~~~~~~~~~~a~~~y~~al~-~P~~~~----~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~---------- 203 (530)
T 2ooe_A 139 SYAENQRITAVRRVYQRGCV-NPMINI----EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKE---------- 203 (530)
T ss_dssp STTHHHHHHHHHHHHHHHTT-SCCTTH----HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHH----------
T ss_pred cHHHHhHHHHHHHHHHHHHh-chhhhH----HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHH----------
Confidence 6888888889988888 465431 01111111111 112333333311110
Q ss_pred ccHHHHHHHHHc-----CCCC-------hhHHHHHHHHHHh----cCCH----HHHHHHHHHHHhcCCCchhhHHHHHHH
Q 004243 461 GSLAVINQMLIN-----DPGK-------SFLRFRQSLLLLR----LNCQ----KAAMRCLRLARNHSSSEHERLVYEGWI 520 (766)
Q Consensus 461 ~~l~~~~~al~~-----~p~~-------~~~~~~la~~~~~----~g~~----~~A~~~~~~a~~~~p~~~~~~~~lg~~ 520 (766)
+..+...++. .|.. ...|......... .++. ..++..|++++..+|.++.+|+.+|..
T Consensus 204 --~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 204 --YETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY 281 (530)
T ss_dssp --HHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1111123322 2322 2344433322222 1232 478899999999999999999999999
Q ss_pred HHH-------CCCHH-------HHHHHHHHHHc-cccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccc
Q 004243 521 LYD-------TGHRE-------EALSRAEKSIS-IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (766)
Q Consensus 521 ~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 585 (766)
+.. .|+++ +|+..|+++++ ..|++ .
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~----------------------------------------~ 321 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----------------------------------------M 321 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC----------------------------------------H
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc----------------------------------------H
Confidence 986 79987 89999999997 78886 5
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDIKH---TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS---- 658 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~---- 658 (766)
.+|..+|.++...|++++|...|+++++..+ ..+|..+|.++...|++++|...|+++++..|.....+...+
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 6788889999999999999999999999854 258999999999999999999999999999888776665544
Q ss_pred -hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHcCCHHH
Q 004243 659 -EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQ-----MLHLRAAFYESIGDLTS 732 (766)
Q Consensus 659 -~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~la~~~~~~g~~~~ 732 (766)
..|+.++|...|+++++..|+++.+|..+|.++...|+.++|...|++++...|.++ .|...+......|+.+.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 468999999999999999999999999999999999999999999999999876542 44466778888999999
Q ss_pred HHHHHHHHHccCCCCh
Q 004243 733 AIRDSQAALCLDPNHM 748 (766)
Q Consensus 733 A~~~~~~al~~~p~~~ 748 (766)
+...++++++..|+++
T Consensus 482 ~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 482 ILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCchhc
Confidence 9999999999999543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=6.3e-25 Score=231.06 Aligned_cols=285 Identities=12% Similarity=0.061 Sum_probs=226.3
Q ss_pred HHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHH
Q 004243 407 DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLL 486 (766)
Q Consensus 407 ~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~ 486 (766)
.+.+.+...+.++.. ....+..+|..+...|++++|. ..++++++.+|+++.++..+|.+
T Consensus 49 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~------------------~~~~~al~~~p~~~~~~~~lg~~ 108 (365)
T 4eqf_A 49 ASEKGYYFHTENPFK--DWPGAFEEGLKRLKEGDLPVTI------------------LFMEAAILQDPGDAEAWQFLGIT 108 (365)
T ss_dssp ----CCCCCSSCTTT--TCTTHHHHHHHHHHHTCHHHHH------------------HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhhhcccCCccc--chhHHHHHHHHHHHCCCHHHHH------------------HHHHHHHHhCcCCHHHHHHHHHH
Confidence 344444444444421 1234666677777777777663 34467777777778889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChH
Q 004243 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESST 565 (766)
Q Consensus 487 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~ 565 (766)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++ ..+..++.
T Consensus 109 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~------------- 175 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG------------- 175 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhcc-------------
Confidence 9999999999999999999999999999999999999999999999999999999887 32222210
Q ss_pred HHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC----ChHHHHHHHHHHHHhccHHHHHHHHH
Q 004243 566 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMT 641 (766)
Q Consensus 566 ~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~la~~~~~~g~~~~A~~~~~ 641 (766)
....+..+|.++...|++++|+..|+++++.. .+.++..+|.++...|++++|+..|+
T Consensus 176 ------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 237 (365)
T 4eqf_A 176 ------------------SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237 (365)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------------------chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 02345677999999999999999999999984 46799999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----
Q 004243 642 KLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD---- 713 (766)
Q Consensus 642 ~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 713 (766)
++++..|++..++..+| ..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|+
T Consensus 238 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 99999999999999999 5799999999999999999999999999999999999999999999999999876
Q ss_pred ---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 714 ---------LQMLHLRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 714 ---------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
...+..++.++...|+.+.|....++.+.
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp ---------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 24566899999999999998888776444
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=5.2e-25 Score=231.72 Aligned_cols=248 Identities=13% Similarity=0.095 Sum_probs=219.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 555 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 555 (766)
+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------- 132 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN----------- 132 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----------
Confidence 345599999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh--HH----------HHHH
Q 004243 556 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RA----------HQGL 623 (766)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~----------~~~l 623 (766)
..++..+|.++...|++++|+..|+++++..+. .. +..+
T Consensus 133 -----------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l 183 (365)
T 4eqf_A 133 -----------------------------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183 (365)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------
T ss_pred -----------------------------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHH
Confidence 567889999999999999999999999998432 22 3445
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhccC--CHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 624 ARVYYLKNELKAAYDEMTKLLEKAQY--SASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 624 a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
|.++...|++++|+..++++++..|+ ++.++..+| ..|++++|+..|+++++.+|+++.+|..+|.++...|++
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999 889999888 569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------------hhHHHHHHHHHHhhhh
Q 004243 698 VEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNH------------METLDLYNRARDQASH 763 (766)
Q Consensus 698 ~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~~~ 763 (766)
++|+..|+++++.+|++ ..++.+|.++...|++++|+..|+++++++|++ ..++..+..+...+.+
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 99999999999999998 556699999999999999999999999999883 5677777777665543
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=1.8e-22 Score=223.45 Aligned_cols=393 Identities=10% Similarity=-0.037 Sum_probs=293.7
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcc
Q 004243 341 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (766)
Q Consensus 341 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 419 (766)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|. ...|...+..+...|++++|...|++++...|+ .
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~-~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-I 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-H
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h
Confidence 678999999999999999984 7899999999999999999995 445566999999999999999999999999994 4
Q ss_pred cccccchhhhHHhH-HHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHc---CCCChhHHHHHHHHHHh------
Q 004243 420 MFHGRVSGDHLVKL-LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN---DPGKSFLRFRQSLLLLR------ 489 (766)
Q Consensus 420 ~~~~~~~a~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~---~p~~~~~~~~la~~~~~------ 489 (766)
..+...+. +....+..+.|...+ ...|++++.. +|.+..+|...+.....
T Consensus 80 ------~lw~~~~~~~~~~~~~~~~a~~~~--------------~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~ 139 (530)
T 2ooe_A 80 ------DLWKCYLSYVRETKGKLPSYKEKM--------------AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGS 139 (530)
T ss_dssp ------HHHHHHHHHHHHHTTTSTTHHHHH--------------HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSS
T ss_pred ------HHHHHHHHHHHHHccchhhHHHHH--------------HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCccc
Confidence 24444443 334556666664322 3356676654 56777888888887765
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCch--hhHHHHHHHH-------------HHCCCHHHHHHHHHH------HHcc-----
Q 004243 490 ---LNCQKAAMRCLRLARNHSSSEH--ERLVYEGWIL-------------YDTGHREEALSRAEK------SISI----- 540 (766)
Q Consensus 490 ---~g~~~~A~~~~~~a~~~~p~~~--~~~~~lg~~~-------------~~~g~~~~A~~~~~~------al~~----- 540 (766)
.|++++|...|+++++ .|... ..|...+... ...+++.+|...+++ .++.
T Consensus 140 ~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 140 YAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 7899999999999999 47643 2333222221 134567778777665 4432
Q ss_pred ccch--------HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc--c--chhHHhhHHHHHH-------hCCH
Q 004243 541 ERTF--------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR--K--GQALNNLGSIYVE-------CGKL 601 (766)
Q Consensus 541 ~p~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~--~~~~~~lg~~~~~-------~g~~ 601 (766)
.|.. ..|..............+... ...++++..|++++. | +.+|..+|..+.. .|++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~---~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQT---LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcch---hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch
Confidence 2321 222222211111111111110 022355566666654 2 5899999999986 7998
Q ss_pred H-------HHHHHHHHHHc-c--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCH-HHHHHHh----hhcCHHHH
Q 004243 602 D-------QAENCYINALD-I--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA-SAFEKRS----EYSDREMA 666 (766)
Q Consensus 602 ~-------~A~~~~~~al~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~----~~~~~~~A 666 (766)
+ +|+..|+++++ . +...+|..+|.++...|++++|...|+++++..|.++ .+|...+ ..|+.++|
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHH
Confidence 7 99999999997 5 4578999999999999999999999999999999985 5888877 46889999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 667 KNDLNMATQLDPLRTYPYRYRAAV-LMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 667 ~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (766)
+..|+++++..|.....+...+.+ +...|++++|...|+++++..|++ ..+..++.++...|+.++|...|+++++..
T Consensus 376 ~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 376 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999999999888888777765 346899999999999999999988 455588999999999999999999999998
Q ss_pred CCChh----HHHHHHHHHH
Q 004243 745 PNHME----TLDLYNRARD 759 (766)
Q Consensus 745 p~~~~----~~~~l~~~~~ 759 (766)
|.+++ +|..+.+...
T Consensus 456 ~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 87765 6655544443
No 31
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=189.36 Aligned_cols=104 Identities=24% Similarity=0.322 Sum_probs=93.6
Q ss_pred cCCCCCCCceEEEEcC----eEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCC
Q 004243 48 CLSLEEDDSVTFCVRD----KEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLF 123 (766)
Q Consensus 48 ~~~~~~~~dv~~~~~~----~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~ 123 (766)
.++++.+|||+|+|+| ++|+|||.||+++|+||++||+++|.|+. .+|.+ +++++++|+.+|+|||||++. +
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l--~~~~~~~f~~~l~~iYt~~~~-~ 77 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHI--PDVEPAAFLILLKYMYSDEID-L 77 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEE--TTSCHHHHHHHHHHHHHCCCC-C
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEe--CCCCHHHHHHHHHHHcCCCcc-C
Confidence 4678899999999988 89999999999999999999999999998 99999 999999999999999999999 9
Q ss_pred CHHHHHHHHHHhhhhChHhHHHHHHHHHHhhc
Q 004243 124 CPGIVLELLSFANRFCCEEMKSACDAHLASLV 155 (766)
Q Consensus 124 ~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~ 155 (766)
+.+++.+++.+|++|+++.|+..|+++|.+.|
T Consensus 78 ~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 78 EADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998764
No 32
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=1.1e-24 Score=227.08 Aligned_cols=250 Identities=13% Similarity=0.098 Sum_probs=215.6
Q ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhh-HHHHHHHHHHHHhccCCcccc
Q 004243 344 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADD-YESALRDTLALLALESNYMMF 421 (766)
Q Consensus 344 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 421 (766)
++.++|++..+|..+|.++...|++++|+..++++++++|+ ...++.+|.++..+|+ +++|+..|++++.++|++..
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~- 167 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ- 167 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH-
Confidence 67788999999999999999999999999999999999994 5556669999999997 99999999999999999984
Q ss_pred cccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004243 422 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 501 (766)
Q Consensus 422 ~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 501 (766)
++..+|.++...|++++| +..|+++++++|++..+|..+|.++..+|++++|+..|+
T Consensus 168 -----a~~~~g~~~~~~g~~~eA------------------l~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 168 -----VWHHRRVLVEWLRDPSQE------------------LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp -----HHHHHHHHHHHHTCCTTH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred -----HHHHHHHHHHHccCHHHH------------------HHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999999998 556799999999999999999999999999999999999
Q ss_pred HHHhcCCCchhhHHHHHHHHHH-CCCHHHH-----HHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 004243 502 LARNHSSSEHERLVYEGWILYD-TGHREEA-----LSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEAL 575 (766)
Q Consensus 502 ~a~~~~p~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 575 (766)
++++++|+++.+|+++|.++.. .|..++| +..|+++++++|++
T Consensus 225 ~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~------------------------------- 273 (382)
T 2h6f_A 225 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN------------------------------- 273 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-------------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-------------------------------
Confidence 9999999999999999999999 5665888 59999999999998
Q ss_pred hchhhccccchhHHhhHHHHHHhC--CHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhc--------c-HHHHHHHHHH
Q 004243 576 RCPSDGLRKGQALNNLGSIYVECG--KLDQAENCYINALDI--KHTRAHQGLARVYYLKN--------E-LKAAYDEMTK 642 (766)
Q Consensus 576 ~~~~~~l~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~ 642 (766)
..+|+++|.++...| ++++|++.++++ +. +.+.++..+|.++..+| + +++|++.|++
T Consensus 274 ---------~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 274 ---------ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp ---------HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 445666666666666 688888888887 55 45578889999998875 2 4677777777
Q ss_pred H-HHhccCCHHHHHHHh
Q 004243 643 L-LEKAQYSASAFEKRS 658 (766)
Q Consensus 643 ~-l~~~p~~~~~~~~~~ 658 (766)
+ ++.+|.....|..++
T Consensus 344 l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 344 LAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp HHHTTCGGGHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHH
Confidence 7 666666666665554
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=3.7e-24 Score=214.92 Aligned_cols=248 Identities=17% Similarity=0.133 Sum_probs=219.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHh
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 556 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 556 (766)
++.++..|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++ .|++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~----------- 70 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNAT----------- 70 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT-----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch-----------
Confidence 467889999999999999999999999999999999999999999999999999999999998 44430
Q ss_pred cCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHH
Q 004243 557 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELK 634 (766)
Q Consensus 557 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~ 634 (766)
. ....++..+|.++...|++++|+..|+++++. +.+.++..+|.++...|+++
T Consensus 71 -~------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 71 -K------------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp -T------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred -h------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence 0 01355899999999999999999999999998 45689999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC---HHHHHHHHHHH
Q 004243 635 AAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK---EVEAVEELSKA 707 (766)
Q Consensus 635 ~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a 707 (766)
+|+..++++++..|++..++..+| ..+++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|+++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 999999999999999999999888 34799999999999999999999999999999999999 99999999999
Q ss_pred HhcC---CCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q 004243 708 IAFK---PDL------QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 761 (766)
Q Consensus 708 l~~~---p~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 761 (766)
++.. |+. ..+..+|.++...|++++|+.+|+++++++|+++.++..+..+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9885 542 34558999999999999999999999999999999999988776544
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=1.3e-23 Score=217.00 Aligned_cols=265 Identities=13% Similarity=0.101 Sum_probs=229.2
Q ss_pred chhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHH
Q 004243 320 PTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFI 396 (766)
Q Consensus 320 ~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~ 396 (766)
...++..|..++..++. |+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+| +...+..+|.++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 45678899999999985 99999999999999999999999999999999999999999999999 4555666999999
Q ss_pred hhhhHHHHHHHHHHHHhccCCcccccccchhhhHH--------------hH-HHHHHhhhchHhhHHHhhhhhcccCccc
Q 004243 397 AADDYESALRDTLALLALESNYMMFHGRVSGDHLV--------------KL-LNHHVRSWSPADCWIKLYDRWSSVDDIG 461 (766)
Q Consensus 397 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 461 (766)
..|++++|+..+++++...|++.. .+..+ +. ++...+++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A----------------- 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQ------LGSVNLQADVDIDDLNVQSEDFFFAAPNEYREC----------------- 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTT------C--------------------CCTTSHHHHHHH-----------------
T ss_pred HcCCHHHHHHHHHHHHHhCCccHH------HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHH-----------------
Confidence 999999999999999999998874 22222 33 35555666666
Q ss_pred cHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc
Q 004243 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (766)
Q Consensus 462 ~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (766)
+..+.++++..|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 158 -RTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp -HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4456888999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--C----
Q 004243 542 RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--K---- 615 (766)
Q Consensus 542 p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~---- 615 (766)
|++ ..++..+|.++...|++++|+..|++++.. +
T Consensus 237 ~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 276 (327)
T 3cv0_A 237 PGY----------------------------------------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276 (327)
T ss_dssp TTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-
T ss_pred CCC----------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccc
Confidence 876 556788899999999999999999999887 2
Q ss_pred --------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Q 004243 616 --------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 648 (766)
Q Consensus 616 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 648 (766)
.+.++..+|.++...|++++|...++++++..|
T Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 277 TGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 356889999999999999999999888776654
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=6.6e-24 Score=219.27 Aligned_cols=276 Identities=12% Similarity=0.039 Sum_probs=234.3
Q ss_pred hhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004243 426 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 505 (766)
Q Consensus 426 ~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 505 (766)
..+..+|..+...+++++|. ..++++++.+|+++.++..+|.++...|++++|+..++++++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAA------------------LAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHH------------------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHH------------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888999999884 455899999999999999999999999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhcccc
Q 004243 506 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 584 (766)
Q Consensus 506 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 584 (766)
.+|.++.++..+|.++...|++++|+..++++++.+|+. ..+..+..... .
T Consensus 84 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~ 135 (327)
T 3cv0_A 84 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV----------------------------D 135 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------
T ss_pred cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHH----------------------------H
Confidence 999999999999999999999999999999999998887 32222211100 0
Q ss_pred chhHHhh-HH-HHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh--
Q 004243 585 GQALNNL-GS-IYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-- 658 (766)
Q Consensus 585 ~~~~~~l-g~-~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~-- 658 (766)
......+ |. ++...|++++|+..++++++.. .+.++..+|.++...|++++|+..++++++..|++..++..+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 1112233 33 4778899999999999999884 5678999999999999999999999999999999999998888
Q ss_pred --hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC------------h-HHHHHHHHH
Q 004243 659 --EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD------------L-QMLHLRAAF 723 (766)
Q Consensus 659 --~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~-~~~~~la~~ 723 (766)
..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++..|+ . ..+..+|.+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 5699999999999999999999999999999999999999999999999999998 5 456689999
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCC
Q 004243 724 YESIGDLTSAIRDSQAALCLDPNH 747 (766)
Q Consensus 724 ~~~~g~~~~A~~~~~~al~~~p~~ 747 (766)
+...|++++|...++++++..|++
T Consensus 296 ~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhcchh
Confidence 999999999999999888776653
No 36
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.92 E-value=3.3e-25 Score=189.92 Aligned_cols=106 Identities=22% Similarity=0.194 Sum_probs=96.2
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
....+.++++.+|||+|.|+|++|+|||.||+++|+||++||+++|.|+...+|++ +++++++|+.+|+|||||++.
T Consensus 14 ~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~ll~~~Yt~~~~- 90 (120)
T 2if5_A 14 SGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEI--DFVSAEALTALMDFAYTATLT- 90 (120)
T ss_dssp HHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEEC--CSSCHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEe--CCCCHHHHHHHHHHHcCCCCc-
Confidence 34556778999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHH
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHL 151 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l 151 (766)
++.+++.+++.+|++|+++.|+..|+++|
T Consensus 91 ~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 99999999999999999999999999987
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.2e-23 Score=206.10 Aligned_cols=241 Identities=18% Similarity=0.160 Sum_probs=219.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 554 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l 554 (766)
.+..+..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++++|+. ..+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----- 77 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV----- 77 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-----
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH-----
Confidence 46788999999999999999999999999999 889999999999999999999999999999988764 00000
Q ss_pred HhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHH
Q 004243 555 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELK 634 (766)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~ 634 (766)
...++..+|.++...|++++|+..|++++...+. +.++...|+++
T Consensus 78 -----------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~ 122 (258)
T 3uq3_A 78 -----------------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------ADILTKLRNAE 122 (258)
T ss_dssp -----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------hHHHHHHhHHH
Confidence 0356889999999999999999999999998654 56788889999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 004243 635 AAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 710 (766)
Q Consensus 635 ~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 710 (766)
+|+..+++++...|.+..++..+| ..|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.
T Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998 5699999999999999999999999999999999999999999999999999
Q ss_pred CCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCChhHHHHHHHH
Q 004243 711 KPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLD------PNHMETLDLYNRA 757 (766)
Q Consensus 711 ~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~ 757 (766)
+|++ ..+..+|.++...|++++|+..|+++++++ |++.+++..+.++
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9998 556689999999999999999999999999 9999888887764
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=2.5e-22 Score=216.21 Aligned_cols=381 Identities=14% Similarity=0.059 Sum_probs=257.6
Q ss_pred HHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCcHHHH
Q 004243 260 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIV 339 (766)
Q Consensus 260 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 339 (766)
..+|..+++.|++++|+..|+++.+.+.......++.++...|.. .+.+.|+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~---------------------------~d~~~A~~ 59 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDP---------------------------AQIKQAEA 59 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC---------------------------CCHHHHHH
Confidence 457889999999999999999998764433332222222221110 01134888
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcC-----CHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Q 004243 340 DLNYASELDPTLSFPYKYRAVAKMEEG-----QIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 414 (766)
Q Consensus 340 ~~~~al~~~p~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 414 (766)
.|+++++. ++.+++.+|.++...+ ++++|+..|+++++..+ +...+.+|.+|...+..+++...++.....
T Consensus 60 ~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a 135 (452)
T 3e4b_A 60 TYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-GNTLIPLAMLYLQYPHSFPNVNAQQQISQW 135 (452)
T ss_dssp --------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-SSCHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred HHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 88888866 6778889998776665 78899999999987544 446667888888877655554444444432
Q ss_pred c-CCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcC--
Q 004243 415 E-SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN-- 491 (766)
Q Consensus 415 ~-p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g-- 491 (766)
. ++++ .+...+|.++...+.++++.... ...+..+.. .++.+++.+|.+|...|
T Consensus 136 ~~~g~~------~a~~~Lg~~y~~~~~~~~~~~~a--------------~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~ 192 (452)
T 3e4b_A 136 QAAGYP------EAGLAQVLLYRTQGTYDQHLDDV--------------ERICKAALN---TTDICYVELATVYQKKQQP 192 (452)
T ss_dssp HHHTCT------THHHHHHHHHHHHTCGGGGHHHH--------------HHHHHHHTT---TCTTHHHHHHHHHHHTTCH
T ss_pred HHCCCH------HHHHHHHHHHHcCCCcccCHHHH--------------HHHHHHHHc---CCHHHHHHHHHHHHHcCCc
Confidence 2 2333 47788888888888777664332 112233333 34448889999998888
Q ss_pred -CHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHC----CCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHH
Q 004243 492 -CQKAAMRCLRLARNHSSSEHERLVYEGWILYDT----GHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTY 566 (766)
Q Consensus 492 -~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~ 566 (766)
++++|+..|+++.+..|..+..++.+|.+|... +++++|+.+|+++. |++
T Consensus 193 ~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~---------------------- 247 (452)
T 3e4b_A 193 EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY---------------------- 247 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS----------------------
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC----------------------
Confidence 888999999999998888888888899888665 78899999998887 665
Q ss_pred HHHHHHHHHhchhhccccchhHHhhHHH-H--HHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhc-----cHHHHHH
Q 004243 567 VIQLLEEALRCPSDGLRKGQALNNLGSI-Y--VECGKLDQAENCYINALDIKHTRAHQGLARVYYLKN-----ELKAAYD 638 (766)
Q Consensus 567 ~~~~~~~A~~~~~~~l~~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g-----~~~~A~~ 638 (766)
+.+++++|.+ + ...+++++|+.+|+++.+.+++.+++++|.+|. .| ++++|+.
T Consensus 248 ------------------~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 248 ------------------PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp ------------------THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 4566677776 3 457899999999999998888999999999887 66 8888999
Q ss_pred HHHHHHHhccCCHHHHHHHhh---h-----cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----CCCHHHHHHHHHH
Q 004243 639 EMTKLLEKAQYSASAFEKRSE---Y-----SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD----DQKEVEAVEELSK 706 (766)
Q Consensus 639 ~~~~~l~~~p~~~~~~~~~~~---~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 706 (766)
+|+++. +.++.+++.+|. . .++++|+.+|+++.+ +.++.+.+++|.+|.. .+++.+|..+|++
T Consensus 309 ~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 309 HFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 888888 788888888872 1 278888888888876 4567888899988875 4688999999999
Q ss_pred HHhcCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHccC
Q 004243 707 AIAFKPDLQMLHLRAAFYES--IGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 707 al~~~p~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~ 744 (766)
+.+..+.. ....++.+... .++..+|....++..+..
T Consensus 384 A~~~g~~~-a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 384 AKAQDTPE-ANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHTTCCHH-HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 88765433 33344444332 345666666666655543
No 39
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.91 E-value=1.8e-24 Score=187.25 Aligned_cols=109 Identities=14% Similarity=0.202 Sum_probs=101.1
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
....+.++++.+|||+|+|+|++|+|||+||+++|+||++||.++|.| ...+|.|+ +++++++|+.+|+|||||++.
T Consensus 18 ~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~-~~~~~~~f~~ll~~~Ytg~~~- 94 (127)
T 1r29_A 18 LNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLD-PEINPEGFNILLDFMYTSRLN- 94 (127)
T ss_dssp HHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECC-TTSCHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeC-CCCCHHHHHHHHHHHcCCCcC-
Confidence 345567789999999999999999999999999999999999999999 77789995 589999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhh
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASL 154 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~ 154 (766)
++.+++.+++.+|++|+++.|+..|+++|.++
T Consensus 95 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999753
No 40
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.91 E-value=1e-24 Score=192.22 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=95.3
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCcc--CCCCeEEecCCCCCHHHHHHHHHHhhcCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVE--SKRKTIDFSHDGVSVEGLRAVEVYTRTSRV 120 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e--~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~ 120 (766)
....+.++++.+|||+|+|+|++|+|||+||+++|+||++||+++|.| +...+|.| +++++++|+.+|+|||||++
T Consensus 36 ~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l--~~v~~~~f~~lL~fiYtg~~ 113 (144)
T 2ppi_A 36 RALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIEL--EGISVMVMREILDYIFSGQI 113 (144)
T ss_dssp HHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEEC--CSSCHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEe--CCCCHHHHHHHHHHHhCCCC
Confidence 445567889999999999999999999999999999999999999876 56779999 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhChHhHHHHHHHHHH
Q 004243 121 DLFCPGIVLELLSFANRFCCEEMKSACDAHLA 152 (766)
Q Consensus 121 ~~~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~ 152 (766)
. ++.+++.+++.+|++|+++.|+..|+++|+
T Consensus 114 ~-i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 114 R-LNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp C-CCTTTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred C-CCHHHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 9 999999999999999999999999999863
No 41
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.91 E-value=5.7e-25 Score=193.03 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=103.6
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCC-CCCHHHHHHHHHHhhcCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD-GVSVEGLRAVEVYTRTSRVD 121 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~-~~~~~~~~~~l~~~yt~~~~ 121 (766)
....+.++++.+|||+|+|+|++|+|||+||+++|+||++||.++|.|+ ..|.+ + ++++++|+.+|+|||||++.
T Consensus 25 ~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l--~~~v~~~~~~~lL~~~Ytg~~~ 100 (138)
T 2z8h_A 25 LSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTL--PEEVTVKGFEPLIQFAYTAKLI 100 (138)
T ss_dssp HHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEEC--CTTSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEe--CCCCCHHHHHHHHHHhcCCCcc
Confidence 4455677889999999999999999999999999999999999999873 57888 5 89999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhh
Q 004243 122 LFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIED 160 (766)
Q Consensus 122 ~~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n 160 (766)
++.+++.+++.+|++|+++.|+..|+++|.+.++ .+|
T Consensus 101 -i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~-~sn 137 (138)
T 2z8h_A 101 -LSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFL-DST 137 (138)
T ss_dssp -CCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCS-CCC
T ss_pred -cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-ccc
Confidence 9999999999999999999999999999999998 666
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=7.5e-23 Score=197.20 Aligned_cols=197 Identities=18% Similarity=0.123 Sum_probs=138.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHH
Q 004243 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 553 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 553 (766)
|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--------- 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY--------- 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------
Confidence 78899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHh-----------CCHHHHHHHHHHHHccC--ChHHH
Q 004243 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-----------GKLDQAENCYINALDIK--HTRAH 620 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~--~~~~~ 620 (766)
..++..+|.++... |++++|+..|+++++++ ++.++
T Consensus 73 -------------------------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 121 (217)
T 2pl2_A 73 -------------------------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121 (217)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHH
Confidence 34445555555554 55555555555555552 33455
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHH
Q 004243 621 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA 700 (766)
Q Consensus 621 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 700 (766)
.++|.++...|++++|+..|+++ ++++ +++.++..+|.++...|++++|
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~a------------------------------l~~~-~~~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQA------------------------------LALE-DTPEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------------------------HHHC-CCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHH------------------------------Hhcc-cchHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555555554 4455 5666777778888888888888
Q ss_pred HHHHHHHHhcCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 701 VEELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 701 ~~~~~~al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
+..|+++++.+|+++ .+..+|.++...|++++|+..|+++-
T Consensus 171 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888888774 44477888888888888888777664
No 43
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.90 E-value=9e-25 Score=186.23 Aligned_cols=105 Identities=13% Similarity=0.018 Sum_probs=95.6
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
....+.++++.+|||+|.|+|++|+|||.||+++|+||++||.+++ ..+|+| +++++++|+.+|+|||||++.
T Consensus 13 ~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l--~~~~~~~f~~ll~~iYtg~~~- 85 (119)
T 3b84_A 13 QELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVL--PAGFAEIFGLLLDFFYTGHLA- 85 (119)
T ss_dssp HHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEE--CGGGHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEe--CCCCHHHHHHHHHHHcCCCCc-
Confidence 3345667889999999999999999999999999999999999987 568999 899999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhh
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASL 154 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~ 154 (766)
++.+++.+++.+|++|+++.|+..|+++|.+.
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999999998753
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=1.2e-22 Score=195.71 Aligned_cols=198 Identities=17% Similarity=0.093 Sum_probs=168.0
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchh
Q 004243 349 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 427 (766)
Q Consensus 349 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 427 (766)
|+++.+++.+|.++...|++++|+..|+++++.+| ++..+..+|.++...|++++|+..|+++++++|++.. +
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------G 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------H
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------H
Confidence 78889999999999999999999999999999999 5555666999999999999999999999999999984 8
Q ss_pred hhHHhHHHHHH-----------hhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHH
Q 004243 428 DHLVKLLNHHV-----------RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 496 (766)
Q Consensus 428 ~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 496 (766)
+..+|.++... |++++| +..++++++.+|+++.++..+|.++...|++++|
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A------------------~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQA------------------LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHH------------------HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 88999999999 999988 4566999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHh
Q 004243 497 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALR 576 (766)
Q Consensus 497 ~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 576 (766)
+..|+++++.+ +++.++..+|.++...|++++|+..|+++++++|++
T Consensus 138 ~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-------------------------------- 184 (217)
T 2pl2_A 138 EASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-------------------------------- 184 (217)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--------------------------------
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------------
Confidence 99999999999 999999999999999999999999999999999998
Q ss_pred chhhccccchhHHhhHHHHHHhCCHHHHHHHHHHH
Q 004243 577 CPSDGLRKGQALNNLGSIYVECGKLDQAENCYINA 611 (766)
Q Consensus 577 ~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (766)
..++..+|.++...|++++|+..|+++
T Consensus 185 --------~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 185 --------LDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp --------HHHHHHHHHHHTC--------------
T ss_pred --------hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555677777777778888888777765
No 45
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.90 E-value=4.4e-24 Score=182.75 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=97.2
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
....+.++++.+|||+|+|+|++|+|||.||+++|+||++||+++ ..+|++ +++++++|+.+|+|+|||++.
T Consensus 17 ~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l--~~~~~~~f~~ll~~~Ytg~~~- 88 (121)
T 1buo_A 17 CKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTL--DFLSPKTFQQILEYAYTATLQ- 88 (121)
T ss_dssp HHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEE--CSSCHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEe--CCCCHHHHHHHHHhhcCCCcC-
Confidence 345567788999999999999999999999999999999999874 458999 899999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhc
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLV 155 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~ 155 (766)
++.+++.+++.+|++|+++.|+..|+++|.+.|
T Consensus 89 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 89 AKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998764
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=2.9e-22 Score=201.09 Aligned_cols=246 Identities=11% Similarity=0.002 Sum_probs=184.1
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhH
Q 004243 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 430 (766)
Q Consensus 352 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~ 430 (766)
+..++.+|.++...|++++|+..|+++++.+|+ ...+..+|.++...|++++|+..++++++ .|.++.. ...++..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~--~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA--KSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC--CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH--HHHHHHH
Confidence 445667777777777777777777777777763 33455577777777777777777777777 4433321 1134666
Q ss_pred HhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 004243 431 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (766)
Q Consensus 431 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 510 (766)
+|.++...|++++|. ..++++++.+|.++.++..+|.++...|++++|+..++++++.+|.+
T Consensus 80 lg~~~~~~~~~~~A~------------------~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 80 YGKILMKKGQDSLAI------------------QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHHTTCHHHHH------------------HHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHHcccHHHHH------------------HHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 777777777777663 34467777777777788888888888999999999999888888888
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHh
Q 004243 511 HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNN 590 (766)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 590 (766)
+.++..+|...+..+++++|+..|+++++.+|++ ..++..
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----------------------------------------~~~~~~ 181 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI----------------------------------------YIGYLW 181 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc----------------------------------------hHHHHH
Confidence 8888888855555568999999999998888886 445666
Q ss_pred hHHHHHHhCC---HHHHHHHHHHHHccC---Ch-------HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHH
Q 004243 591 LGSIYVECGK---LDQAENCYINALDIK---HT-------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKR 657 (766)
Q Consensus 591 lg~~~~~~g~---~~~A~~~~~~al~~~---~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 657 (766)
+|.++...|+ +++|+..|+++++.. +. .++..+|.++...|++++|+..++++++.+|+++.++..+
T Consensus 182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 7777777777 778888888888762 22 5788899999999999999999999999999998887766
Q ss_pred h
Q 004243 658 S 658 (766)
Q Consensus 658 ~ 658 (766)
+
T Consensus 262 ~ 262 (272)
T 3u4t_A 262 K 262 (272)
T ss_dssp C
T ss_pred h
Confidence 5
No 47
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=4.5e-22 Score=200.64 Aligned_cols=208 Identities=12% Similarity=-0.008 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHH
Q 004243 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 555 (766)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 555 (766)
.++..++..+...|++++|++.+++++.. +|+++.+++.+|.++...|++++|++.+++ |++
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~----------- 129 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS----------- 129 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-----------
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-----------
Confidence 34455666666667777777777766654 467777777777777777777777776665 333
Q ss_pred hcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHH
Q 004243 556 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKA 635 (766)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~ 635 (766)
..++..+|.++...|++++|+..|+++++.++......++..+...
T Consensus 130 -----------------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l----- 175 (291)
T 3mkr_A 130 -----------------------------LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL----- 175 (291)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred -----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-----
Confidence 3345555555556666666666666655554333333333222111
Q ss_pred HHHHHHHHHHhccCCHHHHHHHh-hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 636 AYDEMTKLLEKAQYSASAFEKRS-EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 636 A~~~~~~~l~~~p~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
. ..|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 176 ----------------------~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 176 ----------------------AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp ----------------------HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ----------------------HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 1 12445555555666666667777778888888888888888888888888888887
Q ss_pred -HHHHHHHHHHHHcCCHHH-HHHHHHHHHccCCCChhHHHHHHHH
Q 004243 715 -QMLHLRAAFYESIGDLTS-AIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 715 -~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
..+.++|.++...|+.++ +.++++++++++|+++.+.....+.
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~ 278 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKE 278 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 455578888888888865 4677788888888888777655443
No 48
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=4.8e-22 Score=200.41 Aligned_cols=144 Identities=19% Similarity=0.055 Sum_probs=99.9
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHH
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREM 665 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 665 (766)
.+++.+|.++...|++++|+..|++ -+++.++..+|.++..+|++++|+..++++++.
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~------------------- 159 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ------------------- 159 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------------------
Confidence 3445555555555555555555554 234445555555555555555555555555544
Q ss_pred HHHHHHHHHhcCCCCchhHHHHH--HHHHhCCCHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 666 AKNDLNMATQLDPLRTYPYRYRA--AVLMDDQKEVEAVEELSKAIAFKPDLQM-LHLRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 666 A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
+|++.......+ .++...|++++|+..|+++++..|+++. ++.+|.++..+|++++|+..|+++++
T Consensus 160 -----------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 160 -----------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444432222222 3344669999999999999999999855 55899999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHhhh
Q 004243 743 LDPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 743 ~~p~~~~~~~~l~~~~~~~~ 762 (766)
++|++++++..+..+....+
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTT
T ss_pred hCCCCHHHHHHHHHHHHHcC
Confidence 99999999988887665544
No 49
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.7e-24 Score=181.36 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=94.7
Q ss_pred cccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCC
Q 004243 44 EKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLF 123 (766)
Q Consensus 44 ~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~ 123 (766)
...+.++++.+|||+|+|+|++|+|||.||+++|+||++||.++ ..+.|.|+.+++++++|+.+|+|||||++. +
T Consensus 12 ~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~-~ 86 (116)
T 2vpk_A 12 RLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLN-L 86 (116)
T ss_dssp HHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC-C
T ss_pred HHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc-c
Confidence 34556788999999999999999999999999999999999987 356788822399999999999999999999 9
Q ss_pred CHHHHHHHHHHhhhhChHhHHHHHHHHHH
Q 004243 124 CPGIVLELLSFANRFCCEEMKSACDAHLA 152 (766)
Q Consensus 124 ~~~~~~~~l~~a~~~~~~~l~~~c~~~l~ 152 (766)
+.+++.+++.+|++|+++.|+..|+++|.
T Consensus 87 ~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 87 DSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999999985
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=2.6e-21 Score=208.38 Aligned_cols=356 Identities=14% Similarity=-0.001 Sum_probs=260.6
Q ss_pred HHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH---HHHHHHHHHHHccCCCHHHHHHHHHHHHhhh
Q 004243 325 YQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQI---RAAISEIDRIIVFKLSVDCLELRAWLFIAAD 399 (766)
Q Consensus 325 ~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g 399 (766)
.++..++..++. |+..|+++.+. +++.+++.+|.+|...|++ ++|+..|+++++. ++...+.+|.++...|
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCC
Confidence 356666667764 99999999765 5788999999999999999 9999999999976 6667788999666655
Q ss_pred -----hHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCC
Q 004243 400 -----DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP 474 (766)
Q Consensus 400 -----~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p 474 (766)
++++|+..|+++++ ++++ .+...+|.++...+....+.. .+..+.++.. +
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~--~g~~------~A~~~Lg~~y~~~~~~~~~~~---------------a~~~~~~a~~--~ 138 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFA--NGEG------NTLIPLAMLYLQYPHSFPNVN---------------AQQQISQWQA--A 138 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHH--TTCS------SCHHHHHHHHHHCGGGCTTCC---------------HHHHHHHHHH--H
T ss_pred CCCCcCHHHHHHHHHHHHH--CCCH------HHHHHHHHHHHhCCCCCCCHH---------------HHHHHHHHHH--C
Confidence 99999999999987 4444 377888988887666554421 2333444443 3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHH----HHHHHHhcCCCchhhHHHHHHHHHHCC---CHHHHHHHHHHHHccccchHHH
Q 004243 475 GKSFLRFRQSLLLLRLNCQKAAMR----CLRLARNHSSSEHERLVYEGWILYDTG---HREEALSRAEKSISIERTFEAF 547 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~----~~~~a~~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~ 547 (766)
.++.+++.+|.+|...+.++++.. .++.+...+ +.+++.+|.+|...| ++++|+.+|+++.+..|..
T Consensus 139 g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~--- 212 (452)
T 3e4b_A 139 GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT--- 212 (452)
T ss_dssp TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---
T ss_pred CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---
Confidence 468899999999999996555544 444544444 459999999999999 9999999999999987776
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHh----CCHHHHHHHHHHHHccCChHHHHHH
Q 004243 548 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC----GKLDQAENCYINALDIKHTRAHQGL 623 (766)
Q Consensus 548 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~l 623 (766)
+..++++|.+|... +++++|+.+|+++. .+++.+++++
T Consensus 213 -------------------------------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~L 254 (452)
T 3e4b_A 213 -------------------------------------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSL 254 (452)
T ss_dssp -------------------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHH
Confidence 33346667776554 79999999999999 8889999999
Q ss_pred HHH-H--HHhccHHHHHHHHHHHHHhccCCHHHHHHHh---hhc-----CHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 004243 624 ARV-Y--YLKNELKAAYDEMTKLLEKAQYSASAFEKRS---EYS-----DREMAKNDLNMATQLDPLRTYPYRYRAAVLM 692 (766)
Q Consensus 624 a~~-~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~---~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 692 (766)
|.+ + ...+++++|+..|+++.+. .++.+++.+| ..| ++++|+.+|+++. |.++.+++++|.+|.
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 999 4 5788999999999999855 5888888888 334 9999999999999 899999999999998
Q ss_pred h----CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q 004243 693 D----DQKEVEAVEELSKAIAFKPDLQMLHLRAAFYES----IGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 761 (766)
Q Consensus 693 ~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 761 (766)
. ..++++|+.+|+++.+.. +....+.+|.+|.. ..|+.+|..+|+++.+.. ++++...+..+...+
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAARNG-QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPL 403 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTC
T ss_pred CCCCCCcCHHHHHHHHHHHHhhC-hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhC
Confidence 7 459999999999998743 33667799999985 469999999999999865 466766676665443
No 51
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.90 E-value=2.1e-24 Score=188.21 Aligned_cols=107 Identities=13% Similarity=0.004 Sum_probs=93.9
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
....+.++++.++||+|+|+|++|+|||.||+++|+||++||.+++ ..+|.| +++++++|+.+|+|||||++.
T Consensus 14 ~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l--~~~~~~~f~~lL~fiYtg~~~- 86 (135)
T 2yy9_A 14 QELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVL--PAGFAEIFGLLLDFFYTGHLA- 86 (135)
T ss_dssp HHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEE--CGGGHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEe--CCCCHHHHHHHHHHHhCCCCC-
Confidence 3455677899999999999999999999999999999999999887 568999 899999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcC
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~ 156 (766)
++.+++.+|+.+|++|+++.|+..|+++|.+.+.
T Consensus 87 i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 87 LTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988776
No 52
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.1e-21 Score=192.87 Aligned_cols=235 Identities=14% Similarity=0.063 Sum_probs=210.2
Q ss_pred HHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhcc
Q 004243 254 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (766)
Q Consensus 254 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (766)
..+.+++.+|..++..|++++|+..|+++++.+ .+. ..+..+|.++...
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~------------------------------~~~~~~~~~~~~~ 51 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI------------------------------TYLNNRAAAEYEK 51 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT------------------------------HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH------------------------------HHHHHHHHHHHHc
Confidence 457789999999999999999999999999876 332 3455666677777
Q ss_pred CcH--HHHHHHHHHhcCCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHH
Q 004243 334 GRE--KIVDLNYASELDPTL-------SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESA 404 (766)
Q Consensus 334 ~~~--A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A 404 (766)
++. |+..|+++++.+|++ +.++..+|.++...|++++|+..+++++.+.|. +.++...|++++|
T Consensus 52 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKE 124 (258)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHH
Confidence 775 999999999999887 789999999999999999999999999999887 5677888999999
Q ss_pred HHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHH
Q 004243 405 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 484 (766)
Q Consensus 405 ~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la 484 (766)
+..+++++..+|.+. .++..+|.++...|++++|. ..++++++.+|.++.++..+|
T Consensus 125 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~------------------~~~~~a~~~~~~~~~~~~~l~ 180 (258)
T 3uq3_A 125 LKKAEAEAYVNPEKA------EEARLEGKEYFTKSDWPNAV------------------KAYTEMIKRAPEDARGYSNRA 180 (258)
T ss_dssp HHHHHHHHHCCHHHH------HHHHHHHHHHHHTTCHHHHH------------------HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCcchH------HHHHHHHHHHHHhcCHHHHH------------------HHHHHHHhcCcccHHHHHHHH
Confidence 999999999999887 48899999999999999994 556999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc------cch-HHHHHH
Q 004243 485 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE------RTF-EAFFLK 550 (766)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~-~~~~~~ 550 (766)
.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++ |++ ..+..+
T Consensus 181 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 181 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 766 444433
No 53
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.88 E-value=1.3e-23 Score=178.97 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=93.8
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
....+.++++.+|||+|+|+|++|+|||.||+++|+||++||++ ...+|.+ +++++++|+.+|+|||||++.
T Consensus 16 ~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~-----~~~~i~l--~~~~~~~f~~ll~~~Ytg~~~- 87 (119)
T 2q81_A 16 EQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD-----QKDVVHL--DISNAAGLGQVLEFMYTAKLS- 87 (119)
T ss_dssp HHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH-----CCSGGGG--GGCCHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC-----CCCEEEe--CCCCHHHHHHHHHHHcCCCCc-
Confidence 34456678899999999999999999999999999999999986 3457888 889999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHH
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLA 152 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~ 152 (766)
++.+++.+++.+|++|+++.|++.|+++|.
T Consensus 88 i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999999999984
No 54
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.88 E-value=2.2e-24 Score=185.33 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=93.9
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
....+.++++.+|||+|+|+|++|+|||.||+++|+||++||+++|.|+ ..|.++ +++++++|+.+|+|||||++.
T Consensus 18 ~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~-~~v~~~~f~~lL~~iYtg~~~- 93 (124)
T 2ihc_A 18 LSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLP-EEVTVKGFEPLIQFAYTAKLI- 93 (124)
T ss_dssp HHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECC-TTSCHHHHHHHHHHHHHSEEE-
T ss_pred HHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeec-CCcCHHHHHHHHHHhcCCCcc-
Confidence 4455677889999999999999999999999999999999999999874 578882 289999999999999999998
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHH
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLA 152 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~ 152 (766)
++.+++.+++.+|++|+++.|+..|+++|+
T Consensus 94 i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 94 LSKENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp EETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred cCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 999999999999999999999999999874
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.88 E-value=1.4e-20 Score=188.91 Aligned_cols=228 Identities=15% Similarity=0.097 Sum_probs=199.9
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH----CCCHHHHHHHHHHHHccccchHHHH
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFF 548 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 548 (766)
+|+++.+++.+|.++...|++++|+..|+++++ |.++.+++.+|.++.. .|++++|+..|+++++.+ +
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---- 73 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y---- 73 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C----
Confidence 478899999999999999999999999999998 7788999999999999 999999999999999753 2
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHH----hCCHHHHHHHHHHHHccCChHHHHHHH
Q 004243 549 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLA 624 (766)
Q Consensus 549 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~la 624 (766)
+.+++.+|.+|.. .+++++|+.+|+++++.+++.++..+|
T Consensus 74 ------------------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 117 (273)
T 1ouv_A 74 ------------------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLG 117 (273)
T ss_dssp ------------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 4567888888888 899999999999999888888999999
Q ss_pred HHHHH----hccHHHHHHHHHHHHHhccCCHHHHHHHh----h----hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 004243 625 RVYYL----KNELKAAYDEMTKLLEKAQYSASAFEKRS----E----YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLM 692 (766)
Q Consensus 625 ~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 692 (766)
.++.. .+++++|+..|+++++.. +..++..+| . .+++++|+..|+++++.+ ++.++..+|.+|.
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 99998 899999999999998865 566666666 2 678899999999998874 5789999999999
Q ss_pred h----CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCChh
Q 004243 693 D----DQKEVEAVEELSKAIAFKPDLQMLHLRAAFYES----IGDLTSAIRDSQAALCLDPNHME 749 (766)
Q Consensus 693 ~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 749 (766)
. .+++++|+.+|+++++..| ...++.+|.+|.. .+++++|+.+|++++++.|+++.
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 9 9999999999999999876 5677799999999 99999999999999999987543
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=208.61 Aligned_cols=279 Identities=17% Similarity=0.130 Sum_probs=153.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHH
Q 004243 387 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 466 (766)
Q Consensus 387 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~ 466 (766)
.+...|..+...|++++|+..|+++++..|+++.
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------------------------------- 44 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK---------------------------------------------- 44 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH----------------------------------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH----------------------------------------------
Confidence 3445677777777777777777777776666542
Q ss_pred HHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 004243 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (766)
Q Consensus 467 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (766)
....++..+|.++...|++++|+..+++++.. .|..+.++..+|.++...|++++|+..+++++++
T Consensus 45 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 116 (406)
T 3sf4_A 45 --------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116 (406)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 01234566777777777777777777777655 2344667777888888888888888888888876
Q ss_pred ccch-H------HHHHHHHHHHhcCC---------CCCChHHHHHHHHHHHhchhhccc-------c---chhHHhhHHH
Q 004243 541 ERTF-E------AFFLKAYILADTNL---------DPESSTYVIQLLEEALRCPSDGLR-------K---GQALNNLGSI 594 (766)
Q Consensus 541 ~p~~-~------~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~A~~~~~~~l~-------~---~~~~~~lg~~ 594 (766)
.|.. . ++..++..+...+. .......+...+++|+..+.+++. + ..++..+|.+
T Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 196 (406)
T 3sf4_A 117 SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNT 196 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 6543 1 22233333322220 000011111124444444444432 0 2344555555
Q ss_pred HHHhCCHHHHHHHHHHHHccC--C------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHH
Q 004243 595 YVECGKLDQAENCYINALDIK--H------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMA 666 (766)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~--~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A 666 (766)
+...|++++|+..+++++++. . ..++.++|.++...|++++|+..+++++...|.....
T Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------- 263 (406)
T 3sf4_A 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR------------- 263 (406)
T ss_dssp HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------
T ss_pred HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc-------------
Confidence 555555555555555555441 1 1144555555555555555555555555443322000
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004243 667 KNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-------QMLHLRAAFYESIGDLTSAIRDSQA 739 (766)
Q Consensus 667 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~la~~~~~~g~~~~A~~~~~~ 739 (766)
+....++..+|.++...|++++|+..+++++++.+.. ..+..+|.++...|++++|+.+|++
T Consensus 264 -----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 264 -----------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0004456666666666666666666666666552221 1233566666666666666666666
Q ss_pred HHcc
Q 004243 740 ALCL 743 (766)
Q Consensus 740 al~~ 743 (766)
++++
T Consensus 333 al~~ 336 (406)
T 3sf4_A 333 HLEI 336 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 57
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.88 E-value=3e-24 Score=185.30 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=96.3
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCC-CCHHHHHHHHHHhhcCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDG-VSVEGLRAVEVYTRTSRVD 121 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~-~~~~~~~~~l~~~yt~~~~ 121 (766)
....+.++++.+|||+|+|+|++|+|||.||+++|+||++||.+++.| ..+|.+ ++ +++++|+.+|+|||||++.
T Consensus 21 ~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l--~~~~~~~~f~~~l~~iYtg~~~ 96 (125)
T 3ohu_A 21 LGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSL--PEEVTARGFGPLLQFAYTAKLL 96 (125)
T ss_dssp HHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEEC--CTTCCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEe--CCCCCHHHHHHHHHhHcCCceE
Confidence 334567788999999999999999999999999999999999999987 678999 77 9999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhChHhHHHHHHHHH
Q 004243 122 LFCPGIVLELLSFANRFCCEEMKSACDAHL 151 (766)
Q Consensus 122 ~~~~~~~~~~l~~a~~~~~~~l~~~c~~~l 151 (766)
++.+++.+++.+|++|+++.|++.|++||
T Consensus 97 -~~~~~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 97 -LSRENIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp -ECTTTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred -ECHHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 99999999999999999999999998764
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=6.1e-22 Score=211.33 Aligned_cols=197 Identities=16% Similarity=0.116 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc------CCCchhhHHHHHHHHHHCCCHHHH
Q 004243 477 SFLRFRQSLLLLRLNC--------------------QKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEA 530 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~--------------------~~~A~~~~~~a~~~------~p~~~~~~~~lg~~~~~~g~~~~A 530 (766)
+.++..+|.++...|+ +++|+..+++++.. .|....++..+|.++...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 4577888999999999 99999999998876 344466889999999999999999
Q ss_pred HHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHH
Q 004243 531 LSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYI 609 (766)
Q Consensus 531 ~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~ 609 (766)
+..+++++++.|.. ... . ...++..+|.++...|++++|+..++
T Consensus 207 ~~~~~~al~~~~~~~~~~------------------------~-----------~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKA------------------------A-----------ERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHHHHHHTTCHH------------------------H-----------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcH------------------------H-----------HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999876654 000 0 03468899999999999999999999
Q ss_pred HHHccC--C------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCc
Q 004243 610 NALDIK--H------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRT 681 (766)
Q Consensus 610 ~al~~~--~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 681 (766)
+++.+. . ..++..+|.++...|++++|+..++++++..+..... +..+
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------------------------~~~~ 307 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR------------------------IGEG 307 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------------------------HHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc------------------------HHHH
Confidence 999872 1 4588999999999999999999999998775432111 1125
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcCCHHH
Q 004243 682 YPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-------QMLHLRAAFYESIGDLTS 732 (766)
Q Consensus 682 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~la~~~~~~g~~~~ 732 (766)
.++..+|.++...|++++|+.++++++++.+.. ..+..+|.++...|+...
T Consensus 308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 308 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 678899999999999999999999998873221 334478999999887743
No 59
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.1e-23 Score=182.50 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=89.8
Q ss_pred cccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCC-CCCHHHHHHHHHHhhcCCCCC
Q 004243 44 EKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHD-GVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 44 ~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~-~~~~~~~~~~l~~~yt~~~~~ 122 (766)
...+.++++.+|||+|+|+|+.|+|||.||+++|+||++||.++ ...+|.| + ++++++|+.+|+|||||++.
T Consensus 23 ~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l--~~~~~~~~f~~ll~~iYtg~~~- 95 (129)
T 3ga1_A 23 CLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVEL--PAAVQPQSFQQILSFCYTGRLS- 95 (129)
T ss_dssp HHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEEC--CTTCCHHHHHHHHHHHHHSEEE-
T ss_pred HHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEE--CCCCCHHHHHHHHHHHhCCccc-
Confidence 34556678999999999999999999999999999999999887 5678999 7 89999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhc
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLV 155 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~ 155 (766)
++.+++.+++.+|++|+++.|++.|++||.+..
T Consensus 96 i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~~ 128 (129)
T 3ga1_A 96 MNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVS 128 (129)
T ss_dssp CCTTTHHHHHHHHHHTTBTTSSCC---------
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998753
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=2.5e-21 Score=207.14 Aligned_cols=283 Identities=17% Similarity=0.118 Sum_probs=177.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHH
Q 004243 388 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 467 (766)
Q Consensus 388 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 467 (766)
+..+|..+...|++++|+..|+++++..|++..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------------------------- 83 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR----------------------------------------------- 83 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH-----------------------------------------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh-----------------------------------------------
Confidence 334788888888888888888888887777652
Q ss_pred HHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc
Q 004243 468 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (766)
Q Consensus 468 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (766)
....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++++.
T Consensus 84 -------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 84 -------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp -------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 01134567777888888888888888887776 45567788888888888888888888888888763
Q ss_pred c------ch-HHHHHHHHHHHhcCC------CCCChHHHHHHHHHHHhchhhcccc----------chhHHhhHHHHHHh
Q 004243 542 R------TF-EAFFLKAYILADTNL------DPESSTYVIQLLEEALRCPSDGLRK----------GQALNNLGSIYVEC 598 (766)
Q Consensus 542 p------~~-~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~A~~~~~~~l~~----------~~~~~~lg~~~~~~ 598 (766)
+ .. .++..++..+...+. .......+...+++|++.+++++.- ..++..+|.++...
T Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 236 (411)
T 4a1s_A 157 RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 2 22 233333333333220 0000011111144444444443220 13444455555555
Q ss_pred CCHHHHHHHHHHHHccC----C----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHH
Q 004243 599 GKLDQAENCYINALDIK----H----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDL 670 (766)
Q Consensus 599 g~~~~A~~~~~~al~~~----~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~ 670 (766)
|++++|+.+|++++++. . ..++..+|.++...|++++|+..+++++...+.....
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------- 299 (411)
T 4a1s_A 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER----------------- 299 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH-----------------
T ss_pred CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH-----------------
Confidence 55555555555554441 0 1144445555555555555555554444433211000
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 671 NMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-------QMLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 671 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
+....++..+|.++...|++++|+.++++++.+.++. ..+..+|.++...|++++|+.+|++++++
T Consensus 300 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 300 -------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0125778899999999999999999999999885432 24558899999999999999999999999
Q ss_pred CCCCh
Q 004243 744 DPNHM 748 (766)
Q Consensus 744 ~p~~~ 748 (766)
.+...
T Consensus 373 ~~~~~ 377 (411)
T 4a1s_A 373 AXXXX 377 (411)
T ss_dssp CCHHH
T ss_pred Hhhcc
Confidence 87643
No 61
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.87 E-value=5.3e-23 Score=173.92 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=85.6
Q ss_pred CCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHHHH
Q 004243 49 LSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIV 128 (766)
Q Consensus 49 ~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~~~ 128 (766)
..++.+|||+|+|+|++|+|||+|||++|+||++ ....|.+ +++++++|+.+|+|||||++. ++.+++
T Consensus 25 r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l--~~v~~~~f~~ll~fiYtg~~~-i~~~~v 92 (119)
T 3m5b_A 25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALG--EGISPSTFAQLLNFVYGESVE-LQPGEL 92 (119)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECC--SSCCHHHHHHHHHHHTTCCEE-ECGGGH
T ss_pred HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEe--CCCCHHHHHHHHHHHcCCCcC-cCHHHH
Confidence 3568999999999999999999999999999985 3457999 999999999999999999999 999999
Q ss_pred HHHHHHhhhhChHhHHHHHHHHHHh
Q 004243 129 LELLSFANRFCCEEMKSACDAHLAS 153 (766)
Q Consensus 129 ~~~l~~a~~~~~~~l~~~c~~~l~~ 153 (766)
.+++.+|++|+++.|++.|++++.+
T Consensus 93 ~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 93 RPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 9999999999999999999999865
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=4.1e-21 Score=198.88 Aligned_cols=283 Identities=17% Similarity=0.128 Sum_probs=174.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHH
Q 004243 388 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 467 (766)
Q Consensus 388 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 467 (766)
+...|..+...|++++|+..|+++++..|+++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------------------------- 40 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----------------------------------------------- 40 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH-----------------------------------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH-----------------------------------------------
Confidence 445788888888888888888888887776652
Q ss_pred HHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc
Q 004243 468 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (766)
Q Consensus 468 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (766)
....++..+|.++...|++++|+..+++++.. .|..+.++..+|.++...|++++|+..+++++++.
T Consensus 41 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 113 (338)
T 3ro2_A 41 -------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS 113 (338)
T ss_dssp -------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 01235667788888888888888888887765 34456778888999999999999999999988876
Q ss_pred cch-H------HHHHHHHHHHhcCC---------CCCChHHHHHHHHHHHhchhhccc-------c---chhHHhhHHHH
Q 004243 542 RTF-E------AFFLKAYILADTNL---------DPESSTYVIQLLEEALRCPSDGLR-------K---GQALNNLGSIY 595 (766)
Q Consensus 542 p~~-~------~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~A~~~~~~~l~-------~---~~~~~~lg~~~ 595 (766)
|.. . ++..++..+...+. ...........+++|+..+++++. + ..++..+|.++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 193 (338)
T 3ro2_A 114 RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTH 193 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 543 1 23333333332220 000001111114444444443322 0 13444445555
Q ss_pred HHhCCHHHHHHHHHHHHccC----C----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHH
Q 004243 596 VECGKLDQAENCYINALDIK----H----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAK 667 (766)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~----~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~ 667 (766)
...|++++|+..++++++.. . ..++..+|.++...|++++|...+++++...+.....
T Consensus 194 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------- 259 (338)
T 3ro2_A 194 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-------------- 259 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--------------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch--------------
Confidence 55555555555555444431 0 1144444444445555544444444444332211000
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 668 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-------QMLHLRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 668 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~la~~~~~~g~~~~A~~~~~~a 740 (766)
+....++..+|.++...|++++|+.+++++++..|.. ..+..+|.++...|++++|...|+++
T Consensus 260 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 260 ----------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0116678899999999999999999999999875432 24558899999999999999999999
Q ss_pred HccCCCCh
Q 004243 741 LCLDPNHM 748 (766)
Q Consensus 741 l~~~p~~~ 748 (766)
+++.+...
T Consensus 330 ~~~~~~~~ 337 (338)
T 3ro2_A 330 LEISREVG 337 (338)
T ss_dssp HHC-----
T ss_pred HHHHHhhc
Confidence 99987643
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=1.5e-20 Score=188.72 Aligned_cols=219 Identities=14% Similarity=0.042 Sum_probs=136.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 555 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 555 (766)
++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------- 110 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----------- 110 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc-----------
Confidence 345566666666666666666666666666666666666666666666666666666666666666654
Q ss_pred hcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh--HHHHHHHHHHHHhccH
Q 004243 556 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT--RAHQGLARVYYLKNEL 633 (766)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~la~~~~~~g~~ 633 (766)
..++..+|.++...|++++|+..|+++++..+. ......+ .....|++
T Consensus 111 -----------------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~ 160 (275)
T 1xnf_A 111 -----------------------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDE 160 (275)
T ss_dssp -----------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCH
T ss_pred -----------------------------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCH
Confidence 445566666666666666666666666665322 2222222 33455666
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHh---hhcCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhCCCHHHHHHHHHH
Q 004243 634 KAAYDEMTKLLEKAQYSASAFEKRS---EYSDREMAKNDLNMATQLDPL----RTYPYRYRAAVLMDDQKEVEAVEELSK 706 (766)
Q Consensus 634 ~~A~~~~~~~l~~~p~~~~~~~~~~---~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~ 706 (766)
++|+..+++++...|++...+...+ ..++.++|+..+++++...|. ++.++..+|.++...|++++|+..|++
T Consensus 161 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 161 KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6777766666666666554443333 234556666666666655543 257777888888888888888888888
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004243 707 AIAFKPDLQMLHLRAAFYESIGDLTSAIRDS 737 (766)
Q Consensus 707 al~~~p~~~~~~~la~~~~~~g~~~~A~~~~ 737 (766)
+++.+|++... .+.++...|++++|++.|
T Consensus 241 al~~~p~~~~~--~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 241 AVANNVHNFVE--HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCCTTCHH--HHHHHHHHHHHHHC----
T ss_pred HHhCCchhHHH--HHHHHHHHHHHHhhHHHH
Confidence 88887766332 255667777787777776
No 64
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=3e-17 Score=186.61 Aligned_cols=404 Identities=9% Similarity=-0.013 Sum_probs=281.4
Q ss_pred HhhhHHhhcccHHHHHHHHHHHHhcCcc-cc-----HhHHHHHHHH--hccHHHHHHHHhhhccCCCchhHHHHHHHHhc
Q 004243 261 QLGCVMFEREEYKDACYYFEAAADAGHI-YS-----LAGLARAKYK--VGQQYSAYKLINSIISEHKPTGWMYQERSLYN 332 (766)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~-----~~~l~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (766)
.....|...|.+.+|++.|++++ ..|. .+ ...+++...+ .++......+.... . .-..|..+..
T Consensus 990 ~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~----d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 990 VTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNY----D---APDIANIAIS 1061 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhc----c---HHHHHHHHHh
Confidence 35677789999999999999999 4333 11 1122222222 22222222221111 1 2236777777
Q ss_pred cCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004243 333 LGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLA 410 (766)
Q Consensus 333 ~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 410 (766)
.+.+ |...|+++- .........+...|++++|++.++++ ..+..|+.+|..+...|++++|+..|.+
T Consensus 1062 lglyEEAf~IYkKa~-------~~~~A~~VLie~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-------VNTSAVQVLIEHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred CCCHHHHHHHHHHcC-------CHHHHHHHHHHHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 7774 888888862 11112233344788888888888876 2366677789999999999999988877
Q ss_pred HHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhc
Q 004243 411 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 490 (766)
Q Consensus 411 al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~ 490 (766)
+ +++ ..+..++..+...|++++|..++ ..+.+..++ +.+-..+|.+|.++
T Consensus 1131 A-----dD~------say~eVa~~~~~lGkyEEAIeyL------------------~mArk~~~e-~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1131 A-----DDP------SSYMEVVQAANTSGNWEELVKYL------------------QMARKKARE-SYVETELIFALAKT 1180 (1630)
T ss_pred c-----CCh------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhhccc-ccccHHHHHHHHhh
Confidence 5 444 36677888888888888885444 666665532 22333588888888
Q ss_pred CCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHH
Q 004243 491 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQL 570 (766)
Q Consensus 491 g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 570 (766)
+++++ ++.|. ..+ +...+..+|..+...|+|++|...|.++ ..|..++.++...+ +
T Consensus 1181 ~rlee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLg-----------e 1236 (1630)
T 1xi4_A 1181 NRLAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLG-----------E 1236 (1630)
T ss_pred cCHHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhC-----------C
Confidence 88874 44442 123 3456667888888888888888888886 24677788877776 7
Q ss_pred HHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCC
Q 004243 571 LEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (766)
Q Consensus 571 ~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 650 (766)
+++|++.++++.. ..+|...+.++...|++..|..+... + ..+++.+..++..|...|.+++|+..++.++.+++.+
T Consensus 1237 ~q~AIEaarKA~n-~~aWkev~~acve~~Ef~LA~~cgl~-I-iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1237 YQAAVDGARKANS-TRTWKEVCFACVDGKEFRLAQMCGLH-I-VVHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHhhhhHHHHHHHHHHh-h-hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 8888888888844 48899999999999999999998774 2 1466777799999999999999999999999999999
Q ss_pred HHHHHHHh------hhcCHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc---------
Q 004243 651 ASAFEKRS------EYSDREMAKNDLNMATQLDP-----LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF--------- 710 (766)
Q Consensus 651 ~~~~~~~~------~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------- 710 (766)
...+..++ .-++..++++.|...+.+.| .++..|..+..+|.+.|+++.|+...-.....
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~ 1393 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD 1393 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHH
Confidence 88887777 33566888888988888877 67889999999999999999999433322211
Q ss_pred ---CCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 711 ---KPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 711 ---~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
.+.++ .++.....|. +....++..+..++.
T Consensus 1394 ~i~kv~n~elyykai~Fyl--~~~P~~lndLl~~l~ 1427 (1630)
T 1xi4_A 1394 IITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLS 1427 (1630)
T ss_pred HhcccccHHHHHHHHHHHH--hhChHHHHHHHHHhh
Confidence 44454 4445555565 445555555555553
No 65
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=3.5e-18 Score=194.05 Aligned_cols=348 Identities=15% Similarity=0.051 Sum_probs=226.9
Q ss_pred chhHHHHHHHHhccCcH--HHHHHHHHHhcCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHH
Q 004243 320 PTGWMYQERSLYNLGRE--KIVDLNYASELDPT------LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELR 391 (766)
Q Consensus 320 ~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 391 (766)
|+-.-...+.+...+.. |++.|++++ +.|+ +......++.+....++..+.+..+++.+ ....
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d--------~~eI 1055 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD--------APDI 1055 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc--------HHHH
Confidence 33334444455555553 777777777 4443 22222233333333333333333322211 2226
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHH
Q 004243 392 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI 471 (766)
Q Consensus 392 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~ 471 (766)
|.++...|.+++|...|+++- .+. ..+..+....+++++|..+. +
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~----~~~---------~A~~VLie~i~nldrAiE~A------------------e---- 1100 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD----VNT---------SAVQVLIEHIGNLDRAYEFA------------------E---- 1100 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC----CHH---------HHHHHHHHHHhhHHHHHHHH------------------H----
Confidence 888888888888888888862 111 11233445667777764222 2
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHH
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 551 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 551 (766)
..+.+.+|+.+|.++...|++++|+..|.++ +++..+...|.++.+.|++++|+++|..+.+..++......++
T Consensus 1101 -rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1101 -RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred -hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 2367899999999999999999999999875 7788999999999999999999999999998886653334577
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhc
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKN 631 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g 631 (766)
.++...+ ++++ ++.|-.... ...+..+|..+...|+|++|..+|.++ ..|..+|.++.+.|
T Consensus 1175 faYAKl~-----------rlee-le~fI~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1175 FALAKTN-----------RLAE-LEEFINGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLG 1235 (1630)
T ss_pred HHHHhhc-----------CHHH-HHHHHhCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhC
Confidence 7777765 4443 333322222 245667888888888999888888875 57888888888888
Q ss_pred cHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004243 632 ELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 707 (766)
Q Consensus 632 ~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 707 (766)
++++|++.++++ .+..+|...+ ..|++..|..+... +..+ +.-+..++..|...|.+++|+.+++++
T Consensus 1236 e~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1236 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred CHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888 3445555444 44566666666553 3322 344556677777777777777777777
Q ss_pred HhcCCChHHHH-HHHHHHHH--cCCHHHHHHHHHHHHccCC
Q 004243 708 IAFKPDLQMLH-LRAAFYES--IGDLTSAIRDSQAALCLDP 745 (766)
Q Consensus 708 l~~~p~~~~~~-~la~~~~~--~g~~~~A~~~~~~al~~~p 745 (766)
+.++|.+...+ .+|.+|.+ .++..++++.|...+.+.|
T Consensus 1307 L~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1307 LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred hccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 77776664433 55555544 4566677777777766655
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=6.2e-21 Score=204.00 Aligned_cols=288 Identities=13% Similarity=0.077 Sum_probs=211.9
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH-----HHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccch
Q 004243 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-----CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 426 (766)
Q Consensus 352 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 426 (766)
...++.+|..+...|++++|+..|+++++..|+.. .+..+|.++...|++++|+..|++++.+............
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44556667777777777777777777777666322 3444777777777777777777777765211111111124
Q ss_pred hhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHc------CCCChhHHHHHHHHHHhcCC--------
Q 004243 427 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN------DPGKSFLRFRQSLLLLRLNC-------- 492 (766)
Q Consensus 427 a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~------~p~~~~~~~~la~~~~~~g~-------- 492 (766)
++..+|.++...|++++|...+ .++++. .|....++..+|.++...|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 189 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICC------------------ERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHH------------------HHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccch
Confidence 6666777777777777764333 444443 34556788999999999999
Q ss_pred ---------HHHHHHHHHHHHhcC------CCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHh
Q 004243 493 ---------QKAAMRCLRLARNHS------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 556 (766)
Q Consensus 493 ---------~~~A~~~~~~a~~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~ 556 (766)
+++|+..++++++.. +....++..+|.++...|++++|+..+++++++.|.. ...
T Consensus 190 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------- 260 (411)
T 4a1s_A 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA--------- 260 (411)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH---------
Confidence 999999999988763 3345688999999999999999999999999877654 000
Q ss_pred cCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC--------hHHHHHHHHHHH
Q 004243 557 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH--------TRAHQGLARVYY 628 (766)
Q Consensus 557 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~la~~~~ 628 (766)
. ...++..+|.++...|++++|+..|++++...+ ..++..+|.++.
T Consensus 261 ---------------~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 261 ---------------A-----------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp ---------------H-----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------H-----------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 0 024688999999999999999999999998721 468899999999
Q ss_pred HhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004243 629 LKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 629 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 708 (766)
..|++++|+..+++++...+.... .+....++..+|.++...|++++|+.+|++++
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGD------------------------RIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTC------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCC------------------------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999877442110 11225678899999999999999999999999
Q ss_pred hcCCChHH
Q 004243 709 AFKPDLQM 716 (766)
Q Consensus 709 ~~~p~~~~ 716 (766)
++.+....
T Consensus 371 ~~~~~~~~ 378 (411)
T 4a1s_A 371 QLAXXXXX 378 (411)
T ss_dssp HHCCHHHH
T ss_pred HHHhhccc
Confidence 98776543
No 67
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=1.8e-20 Score=184.32 Aligned_cols=215 Identities=15% Similarity=0.102 Sum_probs=164.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 555 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 555 (766)
.+..++.+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA----------- 90 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----------
Confidence 456788999999999999999999999999999999999999999999999999999999999988876
Q ss_pred hcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccH
Q 004243 556 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNEL 633 (766)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~ 633 (766)
..++..+|.++...|++++|+..|+++++.. .+.++..+|.++...|++
T Consensus 91 -----------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 91 -----------------------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH
T ss_pred -----------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 4567778888888888888888888888873 567788888888888888
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 004243 634 KAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 713 (766)
Q Consensus 634 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 713 (766)
++|+..++++++.. |.++.++..+|.++...|++++|+..++++++..|+
T Consensus 142 ~~A~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 142 KLALPYLQRAVELN------------------------------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHHHHHC------------------------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhC------------------------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 77777777766554 445667778889999999999999999999999998
Q ss_pred h-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 004243 714 L-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 714 ~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 760 (766)
+ ..+..+|.++...|++++|+..|+++++++|+++.++..+..+...
T Consensus 192 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 7 4555889999999999999999999999999999998887766543
No 68
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.85 E-value=1.7e-20 Score=188.36 Aligned_cols=224 Identities=17% Similarity=0.163 Sum_probs=198.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC----CCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCC
Q 004243 486 LLLRLNCQKAAMRCLRLARNHS----SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDP 561 (766)
Q Consensus 486 ~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~ 561 (766)
.+...|++++|+..++++++.. |.++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----------------- 76 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----------------- 76 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----------------
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-----------------
Confidence 4445689999999999999973 5668899999999999999999999999999999987
Q ss_pred CChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHH
Q 004243 562 ESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDE 639 (766)
Q Consensus 562 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~ 639 (766)
..++..+|.++...|++++|+..|+++++.. .+.++..+|.++...|++++|+..
T Consensus 77 -----------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 133 (275)
T 1xnf_A 77 -----------------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 133 (275)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHH
Confidence 5678889999999999999999999999984 578999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHh---hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh--
Q 004243 640 MTKLLEKAQYSASAFEKRS---EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-- 714 (766)
Q Consensus 640 ~~~~l~~~p~~~~~~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 714 (766)
++++++..|++.......+ ..|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++...|..
T Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (275)
T 1xnf_A 134 LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE 212 (275)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence 9999999999986554444 568999999999999999998876655 7778888999999999999999887753
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhH
Q 004243 715 ---QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMET 750 (766)
Q Consensus 715 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 750 (766)
..++.+|.++...|++++|+..|+++++++|++...
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 455689999999999999999999999999987653
No 69
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=8.9e-20 Score=180.52 Aligned_cols=214 Identities=15% Similarity=0.054 Sum_probs=187.0
Q ss_pred HcCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHH
Q 004243 471 INDPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFL 549 (766)
Q Consensus 471 ~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 549 (766)
..+|.. +.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|++.++++++.+|++
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----- 104 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----- 104 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-----
Confidence 345555 78899999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHc--cC--ChHHHHHHHH
Q 004243 550 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALD--IK--HTRAHQGLAR 625 (766)
Q Consensus 550 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~--~~~~~~~la~ 625 (766)
..++..+|.++...|++++|+..|++++. .. .+.++..+|.
T Consensus 105 -----------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 105 -----------------------------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 55678889999999999999999999998 42 4568889999
Q ss_pred HHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHH
Q 004243 626 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELS 705 (766)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 705 (766)
++...|++++|+..++++++.. |.++.++..+|.++...|++++|+..++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLN------------------------------RNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------------------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC------------------------------cccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998888888877776654 4556677888999999999999999999
Q ss_pred HHHhcCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHH
Q 004243 706 KAIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 754 (766)
Q Consensus 706 ~al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 754 (766)
++++..|++. .+..++.++...|++++|...++++++++|+++.+...+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999884 455889999999999999999999999999999887654
No 70
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.85 E-value=1.5e-21 Score=164.92 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=87.8
Q ss_pred ccccccCCCCCCCceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCC
Q 004243 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (766)
Q Consensus 43 ~~~~~~~~~~~~~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~ 122 (766)
....+.++++.+|||+|+|+|+.|+|||.||+++|+||++||.++ ..+|.+ +++++++|+.+|+|+|||++..
T Consensus 20 ~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l--~~~~~~~f~~~l~~~Ytg~~~~ 92 (116)
T 3fkc_A 20 NSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVEL--SFIRAEIFAEILNYIYSSKIVR 92 (116)
T ss_dssp HHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEE--CSSCHHHHHHHHHHHTTSCCCS
T ss_pred HHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEe--CCCCHHHHHHHHHhhcCCCcCC
Confidence 334567788999999999999999999999999999999999876 568999 9999999999999999999933
Q ss_pred CCHHHHHHHHHHhhhhChHhHHH
Q 004243 123 FCPGIVLELLSFANRFCCEEMKS 145 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~ 145 (766)
++.+++.+++.+|++|+++.|++
T Consensus 93 ~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 93 VRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHT
T ss_pred CCHHHHHHHHHHHHHhCccccCc
Confidence 99999999999999999999974
No 71
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=1.9e-19 Score=174.43 Aligned_cols=213 Identities=13% Similarity=0.009 Sum_probs=185.4
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHH
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 551 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 551 (766)
..|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------- 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS------- 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------
Confidence 4577888999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHh-CCHHHHHHHHHHHHc--cC--ChHHHHHHHHH
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-GKLDQAENCYINALD--IK--HTRAHQGLARV 626 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~--~~--~~~~~~~la~~ 626 (766)
..++..+|.++... |++++|+..|+++++ .. ...++..+|.+
T Consensus 76 ---------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 76 ---------------------------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp ---------------------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred ---------------------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 45678888999999 999999999999998 32 24688899999
Q ss_pred HHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHH
Q 004243 627 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 706 (766)
Q Consensus 627 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 706 (766)
+...|++++|+..++++++.. |.++.++..+|.++...|++++|+..+++
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQ------------------------------PQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC------------------------------CCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998888888777776654 44566778889999999999999999999
Q ss_pred HHhcCC-ChHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHH
Q 004243 707 AIAFKP-DLQM-LHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 754 (766)
Q Consensus 707 al~~~p-~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 754 (766)
+++..| ++.. +..++.++...|+.++|..+++.+.+.+|+++.+...+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999998 7744 44778888999999999999999999999999887665
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.84 E-value=5.8e-20 Score=172.16 Aligned_cols=165 Identities=19% Similarity=0.200 Sum_probs=156.2
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS---- 658 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~---- 658 (766)
+.+|+++|.+|...|++++|+..|+++++++ ++.++..+|.++...|++++|+..+.+++...|++..++...|
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 5679999999999999999999999999994 6689999999999999999999999999999999999998888
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHH
Q 004243 659 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDS 737 (766)
Q Consensus 659 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~ 737 (766)
..++++.|...+.+++..+|.++.++..+|.++...|++++|++.|+++++++|++ ..++.+|.+|..+|++++|+..|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999 55669999999999999999999
Q ss_pred HHHHccCCCChh
Q 004243 738 QAALCLDPNHME 749 (766)
Q Consensus 738 ~~al~~~p~~~~ 749 (766)
+++++++|+++.
T Consensus 165 ~~al~~~p~~a~ 176 (184)
T 3vtx_A 165 KKALEKEEKKAK 176 (184)
T ss_dssp HHHHHTTHHHHH
T ss_pred HHHHhCCccCHH
Confidence 999999998654
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.84 E-value=7.2e-20 Score=189.43 Aligned_cols=276 Identities=13% Similarity=-0.000 Sum_probs=222.8
Q ss_pred hhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CHHH
Q 004243 321 TGWMYQERSLYNLGRE--KIVDLNYASELDPTLS----FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-------SVDC 387 (766)
Q Consensus 321 ~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-------~~~~ 387 (766)
..+...|..++..|+. |+..|+++++.+|+++ .++..+|.++...|++++|+..+++++.+.+ ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3567788888888886 9999999999999984 6788999999999999999999999987632 1223
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhh--------------------hchHhhH
Q 004243 388 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS--------------------WSPADCW 447 (766)
Q Consensus 388 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~--------------------~~~A~~~ 447 (766)
+..+|.++...|++++|+..++++++..|..........++..+|.++...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 45599999999999999999999999877654323334588889999999999 7777533
Q ss_pred HHhhhhhcccCccccHHHHHHHHHc------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch------hhHH
Q 004243 448 IKLYDRWSSVDDIGSLAVINQMLIN------DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH------ERLV 515 (766)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~ 515 (766)
+ .+++.. .|....++..+|.++...|++++|+..++++++..+... .++.
T Consensus 166 ~------------------~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (338)
T 3ro2_A 166 Y------------------EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 227 (338)
T ss_dssp H------------------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred H------------------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 3 444433 334456889999999999999999999999988765443 3889
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHH
Q 004243 516 YEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSI 594 (766)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~ 594 (766)
.+|.++...|++++|+..+++++.+.|.. ... . ...++..+|.+
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------~-----------~~~~~~~la~~ 272 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRA------------------------V-----------EAQSCYSLGNT 272 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH------------------------H-----------HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh------------------------H-----------HHHHHHHHHHH
Confidence 99999999999999999999999876553 000 0 03567889999
Q ss_pred HHHhCCHHHHHHHHHHHHccC----C----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccC
Q 004243 595 YVECGKLDQAENCYINALDIK----H----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 649 (766)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~----~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 649 (766)
+...|++++|+..+++++... . ..++..+|.++...|++++|...++++++..+.
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999999999872 1 348889999999999999999999999987664
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=7.9e-20 Score=186.65 Aligned_cols=241 Identities=9% Similarity=-0.069 Sum_probs=185.0
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-cCCCchhhHHHHHHHHHHCCCH
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLR-------LNCQ-------KAAMRCLRLARN-HSSSEHERLVYEGWILYDTGHR 527 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~a~~-~~p~~~~~~~~lg~~~~~~g~~ 527 (766)
+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ .+|++..+|..+|.++...|++
T Consensus 36 ~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~ 115 (308)
T 2ond_A 36 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 115 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 567899999999999999999999874 5885 899999999999 6999999999999999999999
Q ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccch-hHHhhHHHHHHhCCHHHHHH
Q 004243 528 EEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ-ALNNLGSIYVECGKLDQAEN 606 (766)
Q Consensus 528 ~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~lg~~~~~~g~~~~A~~ 606 (766)
++|...|++++++.|++ .. +|..+|.++...|++++|+.
T Consensus 116 ~~A~~~~~~al~~~p~~----------------------------------------~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDID----------------------------------------PTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHTSSSSC----------------------------------------THHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHhccccC----------------------------------------ccHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999988876 33 67888888888999999999
Q ss_pred HHHHHHccCC--hHHHHHHHHHHHH-hccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhc---
Q 004243 607 CYINALDIKH--TRAHQGLARVYYL-KNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQL--- 676 (766)
Q Consensus 607 ~~~~al~~~~--~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~--- 676 (766)
.|+++++..+ ..+|...+..... .|++++|...|+++++..|+++.+|..++ ..|+.++|+..|++++..
T Consensus 156 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 9999998843 3455555544332 68888888888888888888877777776 447777777778777774
Q ss_pred CCC-CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHH
Q 004243 677 DPL-RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 754 (766)
Q Consensus 677 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 754 (766)
+|+ ...+|..++..+...|++++|...++++++..|++......+.+ ..-.+++.++|++++++..+
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~~~-----------~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALL-----------VDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHH-----------HTTTCBTTBCSSCHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchHHHH-----------HHHHHhcccCCCCHHHHHhc
Confidence 443 56677777777777777777877777777777765322111222 11126666777777776544
No 75
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.84 E-value=1.3e-19 Score=169.85 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=155.3
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhh
Q 004243 350 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 428 (766)
Q Consensus 350 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 428 (766)
+++..|+.+|.++...|++++|+..|+++++++| ++..+..+|.++...|++++|+..+++++...|++.. ++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE------AY 76 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------HH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH------HH
Confidence 4677899999999999999999999999999999 4455566999999999999999999999999999884 78
Q ss_pred hHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 004243 429 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 508 (766)
Q Consensus 429 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p 508 (766)
..+|.++...++++.|. ..+.+++..+|.++.++..+|.++...|++++|+..|+++++.+|
T Consensus 77 ~~~~~~~~~~~~~~~a~------------------~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAI------------------DALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHHTTCHHHHH------------------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHH------------------HHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 88888888888888884 445889999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 509 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 509 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.++.++..+|.++...|++++|+..|+++++++|++
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999999999999986
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=4e-19 Score=172.83 Aligned_cols=212 Identities=10% Similarity=0.038 Sum_probs=160.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHH
Q 004243 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 552 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 552 (766)
+.++..++.+|.++...|++++|+..|+++++.+| .++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------- 75 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL-------- 75 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH--------
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch--------
Confidence 45678888889999999999999999998888888 788888888888989999999999998888888886
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC--h-------HHHHHH
Q 004243 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH--T-------RAHQGL 623 (766)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~-------~~~~~l 623 (766)
..++..+|.++...|++++|+..|+++++..+ + .++..+
T Consensus 76 --------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 76 --------------------------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE 123 (228)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 55677777777788888888888888777743 3 235555
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhCCCHHHHH
Q 004243 624 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPL--RTYPYRYRAAVLMDDQKEVEAV 701 (766)
Q Consensus 624 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~ 701 (766)
|.++...|++ ++|+..|+++++++|+ ++.++..+|.++...| .
T Consensus 124 g~~~~~~~~~------------------------------~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~ 168 (228)
T 4i17_A 124 GQKFQQAGNI------------------------------EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----A 168 (228)
T ss_dssp HHHHHHTTCH------------------------------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----H
T ss_pred hHHHHHhccH------------------------------HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----H
Confidence 5555555555 5555555555566666 6777888888886544 4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q 004243 702 EELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 761 (766)
Q Consensus 702 ~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 761 (766)
..++++..+.+..... ..+......+.+++|+.+|+++++++|+++++...+.+++..+
T Consensus 169 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 169 DVLRKATPLASSNKEK-YASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHHGGGTTTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcccCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 5567777776655332 2344455678899999999999999999999999999887654
No 77
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=4.7e-19 Score=180.89 Aligned_cols=217 Identities=13% Similarity=0.047 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHHHHHHH-------CCCH-------HHHHHHHHHHHc-cccchHHHHHHHHHHHhcC
Q 004243 494 KAAMRCLRLARNHSSSEHERLVYEGWILYD-------TGHR-------EEALSRAEKSIS-IERTFEAFFLKAYILADTN 558 (766)
Q Consensus 494 ~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~~~~l~~~~ 558 (766)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~-------------- 98 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-------------- 98 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC--------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc--------------
Confidence 789999999999999999999999999874 5886 899999999999 68887
Q ss_pred CCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC--hH-HHHHHHHHHHHhccHHH
Q 004243 559 LDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH--TR-AHQGLARVYYLKNELKA 635 (766)
Q Consensus 559 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~-~~~~la~~~~~~g~~~~ 635 (766)
..+|..+|.++...|++++|...|+++++..+ +. +|..+|.++...|++++
T Consensus 99 --------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 99 --------------------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHH
T ss_pred --------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHH
Confidence 56788899999999999999999999999853 44 89999999999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHhh-----hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 004243 636 AYDEMTKLLEKAQYSASAFEKRSE-----YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 710 (766)
Q Consensus 636 A~~~~~~~l~~~p~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 710 (766)
|...|+++++..|....+|...+. .|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++..
T Consensus 153 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 153 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999888876662 589999999999999999999999999999999999999999999999996
Q ss_pred ---CCC-h-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhH
Q 004243 711 ---KPD-L-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMET 750 (766)
Q Consensus 711 ---~p~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 750 (766)
.|+ . ..|..++..+...|+.++|...++++++..|++++.
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 554 3 455578999999999999999999999999986643
No 78
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=8.3e-19 Score=175.87 Aligned_cols=235 Identities=13% Similarity=0.040 Sum_probs=193.9
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHh----hhhHHHHHHHHHHHHhccCCcccccc
Q 004243 348 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIA----ADDYESALRDTLALLALESNYMMFHG 423 (766)
Q Consensus 348 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 423 (766)
+|+++.+++.+|.++...|++++|+..|+++++.. ++..++.+|.++.. .+++++|+..|+++++.+ ++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~---- 74 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS---- 74 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH----
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH----
Confidence 57888899999999999999999999999998722 45566669999999 999999999999998774 33
Q ss_pred cchhhhHHhHHHHH----HhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHh----cCCHHH
Q 004243 424 RVSGDHLVKLLNHH----VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR----LNCQKA 495 (766)
Q Consensus 424 ~~~a~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~ 495 (766)
.++..+|.++.. .+++++|. ..++++++. +++.++..+|.+|.. .+++++
T Consensus 75 --~a~~~lg~~~~~g~~~~~~~~~A~------------------~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 75 --NGCHLLGNLYYSGQGVSQNTNKAL------------------QYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp --HHHHHHHHHHHHTSSSCCCHHHHH------------------HHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred --HHHHHHHHHHhCCCCcccCHHHHH------------------HHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHH
Confidence 477788888887 77777774 344777766 378888899999988 899999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHH----CCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004243 496 AMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLL 571 (766)
Q Consensus 496 A~~~~~~a~~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 571 (766)
|+..|+++++.+ ++.++..+|.++.. .+++++|+..|+++++..+
T Consensus 133 A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~----------------------------- 181 (273)
T 1ouv_A 133 AVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD----------------------------- 181 (273)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------------------------
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----------------------------
Confidence 999999998875 57788889999988 8999999999998886431
Q ss_pred HHHHhchhhccccchhHHhhHHHHHH----hCCHHHHHHHHHHHHccCChHHHHHHHHHHHH----hccHHHHHHHHHHH
Q 004243 572 EEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLARVYYL----KNELKAAYDEMTKL 643 (766)
Q Consensus 572 ~~A~~~~~~~l~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 643 (766)
+.++..+|.+|.. .+++++|+.+|+++++.+++.++..+|.++.. .+++++|+..|+++
T Consensus 182 -------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 182 -------------SPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp -------------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 4567888999999 99999999999999999889999999999999 99999999999999
Q ss_pred HHhccCCHHHHH
Q 004243 644 LEKAQYSASAFE 655 (766)
Q Consensus 644 l~~~p~~~~~~~ 655 (766)
++..|++...+.
T Consensus 249 ~~~~~~~a~~~l 260 (273)
T 1ouv_A 249 CKLGAKGACDIL 260 (273)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999886555433
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.83 E-value=8.2e-20 Score=197.91 Aligned_cols=208 Identities=18% Similarity=0.184 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCH-HHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004243 493 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR-EEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLL 571 (766)
Q Consensus 493 ~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 571 (766)
+++++..++......|.++.+++.+|.++...|++ ++|+..|+++++++|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~--------------------------- 136 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL--------------------------- 136 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---------------------------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---------------------------
Confidence 45556666666666666666666666666666666 66666666666666665
Q ss_pred HHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHh---------ccHHHHHHHHH
Q 004243 572 EEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLK---------NELKAAYDEMT 641 (766)
Q Consensus 572 ~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~la~~~~~~---------g~~~~A~~~~~ 641 (766)
..+|..+|.+|...|++++|+.+|+++++++ ...++.++|.++... |++++|+..|+
T Consensus 137 -------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~ 203 (474)
T 4abn_A 137 -------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203 (474)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHH
Confidence 4455666666666666666666666666663 245666667776666 77777777777
Q ss_pred HHHHhccCCHHHHHHHh----hh--------cCHHHHHHHHHHHHhcCC---CCchhHHHHHHHHHhCCCHHHHHHHHHH
Q 004243 642 KLLEKAQYSASAFEKRS----EY--------SDREMAKNDLNMATQLDP---LRTYPYRYRAAVLMDDQKEVEAVEELSK 706 (766)
Q Consensus 642 ~~l~~~p~~~~~~~~~~----~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~ 706 (766)
++++.+|++..+|..+| .. |++++|+..|+++++++| .++.+|.++|.++...|++++|+..|++
T Consensus 204 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777766666 33 667888888888888888 8899999999999999999999999999
Q ss_pred HHhcCCChH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 707 AIAFKPDLQ-MLHLRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 707 al~~~p~~~-~~~~la~~~~~~g~~~~A~~~~~~a 740 (766)
+++++|++. .+..++.++...|++++|++.+.+.
T Consensus 284 al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999985 5668999999999999999876543
No 80
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=3.8e-19 Score=174.77 Aligned_cols=210 Identities=13% Similarity=0.052 Sum_probs=178.2
Q ss_pred CchhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHH
Q 004243 319 KPTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLF 395 (766)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~ 395 (766)
.+..|+.+|..++..++. |+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|. ...+..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 356778888888888885 999999999999999999999999999999999999999999999984 45556699999
Q ss_pred HhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCC
Q 004243 396 IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG 475 (766)
Q Consensus 396 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~ 475 (766)
...|++++|+..++++++..|++. .++..++.++...|++++|. ..++++++..|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~------------------~~~~~~~~~~~~ 157 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENG------DLFYMLGTVLVKLEQPKLAL------------------PYLQRAVELNEN 157 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSH------HHHHHHHHHHHHTSCHHHHH------------------HHHHHHHHHCTT
T ss_pred HHhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhccHHHHH------------------HHHHHHHHhCCc
Confidence 999999999999999999999987 48889999999999999995 455899999999
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 552 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~ 552 (766)
++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++++++|++ .++..++.
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 65554443
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.81 E-value=5e-19 Score=191.72 Aligned_cols=210 Identities=10% Similarity=0.009 Sum_probs=192.1
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH-HHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004243 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQI-RAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (766)
Q Consensus 336 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 413 (766)
.++..+++.....|.++.+++.+|.++...|++ ++|+..|+++++++|+ ...+..+|.+|...|++++|+..|+++++
T Consensus 86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 367778888889999999999999999999999 9999999999999995 55666799999999999999999999999
Q ss_pred ccCCcccccccchhhhHHhHHHHHH---------hhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHH
Q 004243 414 LESNYMMFHGRVSGDHLVKLLNHHV---------RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 484 (766)
Q Consensus 414 ~~p~~~~~~~~~~a~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la 484 (766)
++|+ . .++..+|.++... +++++|. ..++++++.+|+++.+|..+|
T Consensus 166 ~~p~-~------~~~~~lg~~~~~~~~~~~~~~~g~~~~A~------------------~~~~~al~~~p~~~~~~~~lg 220 (474)
T 4abn_A 166 HCKN-K------VSLQNLSMVLRQLQTDSGDEHSRHVMDSV------------------RQAKLAVQMDVLDGRSWYILG 220 (474)
T ss_dssp TCCC-H------HHHHHHHHHHTTCCCSCHHHHHHHHHHHH------------------HHHHHHHHHCTTCHHHHHHHH
T ss_pred hCCC-H------HHHHHHHHHHHHhccCChhhhhhhHHHHH------------------HHHHHHHHhCCCCHHHHHHHH
Confidence 9998 3 3888899999888 8888884 556999999999999999999
Q ss_pred HHHHhc--------CCHHHHHHHHHHHHhcCC---CchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHH
Q 004243 485 LLLLRL--------NCQKAAMRCLRLARNHSS---SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 552 (766)
Q Consensus 485 ~~~~~~--------g~~~~A~~~~~~a~~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~ 552 (766)
.++... |++++|+..|+++++.+| .++.+++.+|.++...|++++|+..|+++++++|++ .++..++.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999 999999999999999999 999999999999999999999999999999999999 88999998
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhchhhc
Q 004243 553 ILADTNLDPESSTYVIQLLEEALRCPSDG 581 (766)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~~ 581 (766)
++...+ ++++|++.+.+.
T Consensus 301 ~~~~lg-----------~~~eAi~~~~~~ 318 (474)
T 4abn_A 301 LLEFLS-----------RLTSLLESKGKT 318 (474)
T ss_dssp HHHHHH-----------HHHHHHHHTTTC
T ss_pred HHHHHH-----------HHHHHHHHhccc
Confidence 887776 888888866555
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=1.1e-17 Score=162.48 Aligned_cols=136 Identities=10% Similarity=-0.013 Sum_probs=83.6
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchh
Q 004243 350 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 427 (766)
Q Consensus 350 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 427 (766)
.++..++.+|.++...|++++|+..|+++++++| +...++.+|.++...|++++|+..|+++++.+|++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--------- 75 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL--------- 75 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------
Confidence 3445566666666666666666666666666553 33334445556666666665555555555544443
Q ss_pred hhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004243 428 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 507 (766)
Q Consensus 428 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 507 (766)
+.++..+|.++..+|++++|+..++++++.+
T Consensus 76 -------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 76 -------------------------------------------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -------------------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 3345566666666666667777776666666
Q ss_pred CCch-------hhHHHHHHHHHHCCCHHHHHHHHHHHHccccc
Q 004243 508 SSEH-------ERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (766)
Q Consensus 508 p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (766)
|+++ .++..+|.++...|++++|+..|+++++++|+
T Consensus 107 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 107 PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 6666 45666677777777777777777777776666
No 83
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=2e-18 Score=182.47 Aligned_cols=233 Identities=9% Similarity=0.065 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC---CchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHH
Q 004243 479 LRFRQSLLLLRLNCQKAAMRCLRLARNH---SS---SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 551 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~ 551 (766)
.++.+|..+...|++++|+..++++++. .+ ..+.++..+|.++...|++++|+..+++++++.+.. .....
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-- 182 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR-- 182 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH--
Confidence 3455999999999999999999999987 23 246789999999999999999999999999876554 10000
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CC----hHHHHHH
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KH----TRAHQGL 623 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~----~~~~~~l 623 (766)
...++.++|.+|...|++++|+..|++++++ ++ ..++.++
T Consensus 183 --------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 183 --------------------------------LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp --------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0345788888888888888888888888877 11 1478888
Q ss_pred HHHHHHhccHHHHHHHHHHHHH-----hc-cCCHHHHHHHh----hhcCHHHHHHHHHHHHhcC-----CCCchhHHHHH
Q 004243 624 ARVYYLKNELKAAYDEMTKLLE-----KA-QYSASAFEKRS----EYSDREMAKNDLNMATQLD-----PLRTYPYRYRA 688 (766)
Q Consensus 624 a~~~~~~g~~~~A~~~~~~~l~-----~~-p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la 688 (766)
|.++..+|++++|+..++++++ .+ |....++..+| ..|++++|+..+++++++. |.....+..+|
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888887 34 56666777777 5688888888888888763 33344467899
Q ss_pred HHHHhCCC---HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004243 689 AVLMDDQK---EVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPN 746 (766)
Q Consensus 689 ~~~~~~g~---~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 746 (766)
.++...|+ +++|+..+++. ...|.. ..+..+|.+|...|++++|..+|++++++...
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999 88888888876 222222 34558999999999999999999999987544
No 84
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=1.3e-17 Score=161.54 Aligned_cols=210 Identities=14% Similarity=0.065 Sum_probs=147.0
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccch
Q 004243 348 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 426 (766)
Q Consensus 348 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 426 (766)
+|+++.+++.+|.++...|++++|+..++++++..|+ +..+..+|.++...|++++|+..|++++..+|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------- 76 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA------- 76 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-------
Confidence 4566667777777777777777777777777776663 33444477777777777777777766666555443
Q ss_pred hhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 004243 427 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL-NCQKAAMRCLRLARN 505 (766)
Q Consensus 427 a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 505 (766)
.++..+|.++... |++++|+..++++++
T Consensus 77 ---------------------------------------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 77 ---------------------------------------------------EINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred ---------------------------------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 4455667777777 777777777777777
Q ss_pred --cCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc
Q 004243 506 --HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 583 (766)
Q Consensus 506 --~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 583 (766)
..|.++.++..+|.++...|++++|+..++++++..|++
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------------------------- 146 (225)
T 2vq2_A 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--------------------------------------- 146 (225)
T ss_dssp STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------------------------------
T ss_pred CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------------------------
Confidence 555566777777777777777777777777777776665
Q ss_pred cchhHHhhHHHHHHhCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHH
Q 004243 584 KGQALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 655 (766)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 655 (766)
..++..+|.++...|++++|+..++++++.. .+..+..++.++...|+.++|...++.+.+..|+++.+..
T Consensus 147 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 147 -PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4456667777777777777777777777663 3456677777778888888888888888778887776644
No 85
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=7.9e-18 Score=177.89 Aligned_cols=241 Identities=9% Similarity=0.018 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccC---CC----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccc-ccccc
Q 004243 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFK---LS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMM-FHGRV 425 (766)
Q Consensus 354 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~ 425 (766)
.++.+|..+...|++++|+..+++++++. ++ ...++.+|.++...|++++|+..+++++++.+.... ....+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 45569999999999999999999999872 22 233555999999999999999999999998776653 23345
Q ss_pred hhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCC------hhHHHHHHHHHHhcCCHHHHHHH
Q 004243 426 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK------SFLRFRQSLLLLRLNCQKAAMRC 499 (766)
Q Consensus 426 ~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 499 (766)
.++..+|.++...|++++|.. .+.++++..|.. ..++.++|.+|..+|++++|+..
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~------------------~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAIS------------------HFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHH------------------HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 688899999999999999954 346666654332 35889999999999999999999
Q ss_pred HHHHHh-----cC-CCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 004243 500 LRLARN-----HS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLE 572 (766)
Q Consensus 500 ~~~a~~-----~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 572 (766)
++++++ .+ |..+.++..+|.++...|++++|+..+++++++.+.. ....
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------ 302 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY------------------------ 302 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------------------
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH------------------------
Confidence 999998 56 7778899999999999999999999999999875442 0000
Q ss_pred HHHhchhhccccchhHHhhHHHHHHhCC---HHHHHHHHHHHHcc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Q 004243 573 EALRCPSDGLRKGQALNNLGSIYVECGK---LDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 648 (766)
Q Consensus 573 ~A~~~~~~~l~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 648 (766)
...+..+|.++...|+ +++|+..+++.-.. ....++..+|.+|...|++++|...++++++...
T Consensus 303 ------------~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 303 ------------LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp ------------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 1124567888888888 77777777776322 2345788899999999999999999999887654
No 86
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=9.6e-18 Score=165.80 Aligned_cols=201 Identities=14% Similarity=0.054 Sum_probs=185.8
Q ss_pred chhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHH
Q 004243 320 PTGWMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFI 396 (766)
Q Consensus 320 ~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~ 396 (766)
+..|..+|..+...++. |+..|+++++.+|+++.++..+|.++...|++++|+..++++++..| +...+..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 56788889999888885 99999999999999999999999999999999999999999999998 4455666999999
Q ss_pred hhhhHHHHHHHHHHHHh--ccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCC
Q 004243 397 AADDYESALRDTLALLA--LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP 474 (766)
Q Consensus 397 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p 474 (766)
..|++++|+..+++++. ..|.+. .++..++.++...|++++|. ..+.++++..|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~la~~~~~~g~~~~A~------------------~~~~~~~~~~~ 172 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERS------RVFENLGLVSLQMKKPAQAK------------------EYFEKSLRLNR 172 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHH------HHHHHHHHHHHHTTCHHHHH------------------HHHHHHHHHCS
T ss_pred HHhHHHHHHHHHHHHHhCccCcccH------HHHHHHHHHHHHcCCHHHHH------------------HHHHHHHhcCc
Confidence 99999999999999999 666666 48888999999999999995 44589999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.++.++..+|.++...|++++|+..++++++..|.++.++..++.++...|++++|...++++++..|++
T Consensus 173 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.79 E-value=4.1e-18 Score=169.51 Aligned_cols=205 Identities=12% Similarity=0.042 Sum_probs=153.2
Q ss_pred HcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHH
Q 004243 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 547 (766)
Q Consensus 471 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 547 (766)
...|.++..++.+|..+...|++++|+..|+++++..|++ +.+++.+|.++...|++++|+..|+++++..|++.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-- 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-- 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc--
Confidence 4567777888888888888888888888888888887777 77788888888888888888888888887777540
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 004243 548 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVY 627 (766)
Q Consensus 548 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~ 627 (766)
..+.+++.+|.++
T Consensus 87 -------------------------------------------------------------------~~~~a~~~lg~~~ 99 (261)
T 3qky_A 87 -------------------------------------------------------------------RVPQAEYERAMCY 99 (261)
T ss_dssp -------------------------------------------------------------------THHHHHHHHHHHH
T ss_pred -------------------------------------------------------------------hhHHHHHHHHHHH
Confidence 0123455566666
Q ss_pred HH--------hccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHH
Q 004243 628 YL--------KNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE 699 (766)
Q Consensus 628 ~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 699 (766)
.. .|++++|+..|+++++..|++..+...+... ....+.....++.+|.+|...|++++
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~-------------~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI-------------RELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 66 7888888888888888888776554333211 11111223457899999999999999
Q ss_pred HHHHHHHHHhcCCCh----HHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 700 AVEELSKAIAFKPDL----QMLHLRAAFYESI----------GDLTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 700 A~~~~~~al~~~p~~----~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
|+..|+++++..|++ ..++.+|.+|..+ |++++|+..|+++++.+|+++.+......+
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 238 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELY 238 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 999999999999984 4566899999977 999999999999999999997654444333
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.79 E-value=9e-19 Score=196.73 Aligned_cols=172 Identities=22% Similarity=0.193 Sum_probs=132.7
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHH
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 551 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 551 (766)
..|+++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------- 76 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------- 76 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 4677888888888888888888888888888888888888888888888888888888888888888888876
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHH
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYL 629 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~ 629 (766)
..+++++|.++..+|++++|++.|+++++++ .+.++.++|.++..
T Consensus 77 ---------------------------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 77 ---------------------------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123 (723)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5667777777777777777777777777763 45677777777777
Q ss_pred hccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004243 630 KNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 630 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 709 (766)
+|++++|+..|+++++ ++|+++.++.++|.++...|++++|++.++++++
T Consensus 124 ~g~~~eAi~~~~~Al~------------------------------l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 124 SGNIPEAIASYRTALK------------------------------LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCHHHHHHHHHHHHH------------------------------HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH------------------------------hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 7776666665555554 4566667777888888888888888888888887
Q ss_pred cCCC
Q 004243 710 FKPD 713 (766)
Q Consensus 710 ~~p~ 713 (766)
+.|+
T Consensus 174 l~~~ 177 (723)
T 4gyw_A 174 IVAD 177 (723)
T ss_dssp HHHH
T ss_pred hChh
Confidence 6543
No 89
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.79 E-value=1.2e-18 Score=195.70 Aligned_cols=175 Identities=13% Similarity=0.014 Sum_probs=162.3
Q ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccccccc
Q 004243 346 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 424 (766)
Q Consensus 346 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 424 (766)
...|+++.++.++|.++..+|++++|+..|+++++++|+ ...+..+|.++..+|++++|+..|+++++++|++.
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~----- 77 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA----- 77 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Confidence 357899999999999999999999999999999999995 55566699999999999999999999999999998
Q ss_pred chhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004243 425 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 504 (766)
Q Consensus 425 ~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 504 (766)
.++..+|.++...|++++| +..|+++++++|+++.++.++|.+|..+|++++|+..|++++
T Consensus 78 -~a~~nLg~~l~~~g~~~~A------------------~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 78 -DAYSNMGNTLKEMQDVQGA------------------LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp -HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4899999999999999999 456699999999999999999999999999999999999999
Q ss_pred hcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 505 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 505 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
+++|+++.++.++|.++...|++++|++.+++++++.|+.
T Consensus 139 ~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 139 KLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 9999999999999999999999999999999999987654
No 90
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=176.96 Aligned_cols=234 Identities=15% Similarity=0.082 Sum_probs=148.6
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc---
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--- 541 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 541 (766)
+|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999999999999999999984 67778899999999999999999999999999863
Q ss_pred -----cchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-
Q 004243 542 -----RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK- 615 (766)
Q Consensus 542 -----p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 615 (766)
|.. ..++..+|.++...|++++|+..|+++++..
T Consensus 103 ~~~~~~~~----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 103 LGKDHPAV----------------------------------------AATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142 (311)
T ss_dssp HCTTCHHH----------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCChHH----------------------------------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 222 2345555555555555555555555555441
Q ss_pred ---------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------ccCCHHHHHHHh----hhcCHHHHHHHHHHHH
Q 004243 616 ---------HTRAHQGLARVYYLKNELKAAYDEMTKLLEK--------AQYSASAFEKRS----EYSDREMAKNDLNMAT 674 (766)
Q Consensus 616 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~----~~~~~~~A~~~~~~al 674 (766)
...++..+|.++...|++++|+..+++++.. .|....++..+| ..|++++|+..+++++
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1134555555555555555555555555554 333333444444 3355555555555555
Q ss_pred hc---------CCCCchhHHH------HHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHH
Q 004243 675 QL---------DPLRTYPYRY------RAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQ 738 (766)
Q Consensus 675 ~~---------~p~~~~~~~~------la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~ 738 (766)
+. .+.....+.. .+..+...+.+.+|...++++....|.. ..+..+|.+|...|++++|+.+|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 223 TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp HHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 32 2333333333 3334445566677777888888777777 455589999999999999999999
Q ss_pred HHHccCCC
Q 004243 739 AALCLDPN 746 (766)
Q Consensus 739 ~al~~~p~ 746 (766)
+++++.|+
T Consensus 303 ~al~l~~~ 310 (311)
T 3nf1_A 303 AAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhc
Confidence 99998875
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.76 E-value=1.1e-16 Score=159.69 Aligned_cols=229 Identities=10% Similarity=0.004 Sum_probs=197.3
Q ss_pred CCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCC--CHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHH
Q 004243 491 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG--HREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYV 567 (766)
Q Consensus 491 g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~ 567 (766)
...++|+..+.+++.++|++..+|+..+.++...| ++++++..+++++..+|++ .+|...+.++....
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~--------- 117 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM--------- 117 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH---------
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH---------
Confidence 44479999999999999999999999999999999 9999999999999999999 65555554442110
Q ss_pred HHHHHHHHhchhhccccchhHHhhHHHHHHh---CCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHH--HHHHHH
Q 004243 568 IQLLEEALRCPSDGLRKGQALNNLGSIYVEC---GKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELK--AAYDEM 640 (766)
Q Consensus 568 ~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~--~A~~~~ 640 (766)
... +++++++.+++++++.+ +..+|...+.+....|.++ ++++.+
T Consensus 118 ----------------------------~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 118 ----------------------------ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp ----------------------------HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ----------------------------HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 333 68899999999999984 5679999999999999988 999999
Q ss_pred HHHHHhccCCHHHHHHHh----hhcC------HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHH-HHHHHHHHHh
Q 004243 641 TKLLEKAQYSASAFEKRS----EYSD------REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE-AVEELSKAIA 709 (766)
Q Consensus 641 ~~~l~~~p~~~~~~~~~~----~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~ 709 (766)
+++++.+|.+..+|..++ ..+. ++++++.+++++..+|++..+|..++.++...|+..+ ....+.++++
T Consensus 170 ~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 170 DKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 999999999999999998 3455 8999999999999999999999999999999998655 4457777777
Q ss_pred cC---CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHc-cCCCChhHHHHHHH
Q 004243 710 FK---PDL-QMLHLRAAFYESIGDLTSAIRDSQAALC-LDPNHMETLDLYNR 756 (766)
Q Consensus 710 ~~---p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~ 756 (766)
++ |.+ .++..++.++.+.|+.++|++.|+.+.+ .||-....|....+
T Consensus 250 ~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 250 LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 65 555 5666899999999999999999999996 89999998887654
No 92
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.76 E-value=1.6e-16 Score=167.42 Aligned_cols=231 Identities=13% Similarity=0.049 Sum_probs=187.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHH
Q 004243 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSS------SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 551 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~ 551 (766)
.++.+|..+...|++++|+..++++++..+ ..+.+++.+|.++...|++++|+..+++++++.+.. .....
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~-- 180 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR-- 180 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH--
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh--
Confidence 577899999999999999999999998632 246789999999999999999999999999876653 00000
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CC----hHHHHHH
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KH----TRAHQGL 623 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~----~~~~~~l 623 (766)
...++.++|.++...|++++|+..|++++++ ++ ..++.++
T Consensus 181 --------------------------------~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 228 (378)
T 3q15_A 181 --------------------------------TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI 228 (378)
T ss_dssp --------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1456889999999999999999999999986 12 2478899
Q ss_pred HHHHHHhccHHHHHHHHHHHHH-----hccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCC-----CchhHHHHHH
Q 004243 624 ARVYYLKNELKAAYDEMTKLLE-----KAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPL-----RTYPYRYRAA 689 (766)
Q Consensus 624 a~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~ 689 (766)
|.++..+|++++|+..++++++ .+|....++..+| ..|++++|+..+++++++.+. ....+..++.
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 308 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999998 6677777788888 569999999999999987443 3445678888
Q ss_pred HHHhCCC---HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 690 VLMDDQK---EVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 690 ~~~~~g~---~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (766)
++...++ +.+|+..+++. ...|.. ..+..+|.+|...|++++|..+|++++++.
T Consensus 309 ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 309 VYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8988999 88888888873 222222 344489999999999999999999998754
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=2.4e-17 Score=166.59 Aligned_cols=217 Identities=13% Similarity=0.018 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 004243 492 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLL 571 (766)
Q Consensus 492 ~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 571 (766)
++++|+..|+++ |.++...|++++|+..|++++++.+.. + ..
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~-------------~-----------~~ 73 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKA-------------G-----------NE 73 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHT-------------T-----------CH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHh-------------C-----------CH
Confidence 477777777766 456677777777777777777654332 0 00
Q ss_pred HHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC----C----hHHHHHHHHHHHHh-ccHHHHHHHHHH
Q 004243 572 EEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK----H----TRAHQGLARVYYLK-NELKAAYDEMTK 642 (766)
Q Consensus 572 ~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~----~~~~~~la~~~~~~-g~~~~A~~~~~~ 642 (766)
.. .+.++.++|.+|...|++++|+.+|++++++. + ..++.++|.+|... |++++|+..|++
T Consensus 74 ~~----------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 74 DE----------AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 00 02456777777777777777777777777761 1 24677777777775 777777777777
Q ss_pred HHHhccCC------HHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCch-------hHHHHHHHHHhCCCHHHHHHHHH
Q 004243 643 LLEKAQYS------ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTY-------PYRYRAAVLMDDQKEVEAVEELS 705 (766)
Q Consensus 643 ~l~~~p~~------~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~ 705 (766)
++++.|.. ..++..+| ..|++++|+..|++++++.|.+.. ++.++|.++...|++++|+.+|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77776644 23455555 457777788888888877776543 57899999999999999999999
Q ss_pred HHHhcCCChHH------HHHHHHHHH--HcCCHHHHHHHHHHHHccCCCChhHHHHHHH
Q 004243 706 KAIAFKPDLQM------LHLRAAFYE--SIGDLTSAIRDSQAALCLDPNHMETLDLYNR 756 (766)
Q Consensus 706 ~al~~~p~~~~------~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 756 (766)
++++++|+... +..++..+. ..+++++|+..|++++.++|.+..++..+.+
T Consensus 224 ~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 99999998632 224555554 4578999999999999999887655544443
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.75 E-value=2.5e-17 Score=186.58 Aligned_cols=182 Identities=18% Similarity=0.056 Sum_probs=165.6
Q ss_pred HcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH--------hcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcccc
Q 004243 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR--------NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 542 (766)
Q Consensus 471 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 542 (766)
..+|+++.+++..| ...|++++|++.+++++ +.+|+++.+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35788888888777 78999999999999999 89999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHH
Q 004243 543 TFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH 620 (766)
Q Consensus 543 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 620 (766)
++ ..+|+++|.++...|++++|+..|+++++++ ++.++
T Consensus 465 ~~----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 504 (681)
T 2pzi_A 465 WR----------------------------------------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPK 504 (681)
T ss_dssp CC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred ch----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 97 6778899999999999999999999999994 67899
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 004243 621 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 696 (766)
Q Consensus 621 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 696 (766)
+++|.++...|++++ +..|+++++.+|++..++..+| ..|++++|+..|+++++++|+++.++.++|.++...++
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999 9999999999999999999998 67999999999999999999999999999999987666
No 95
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=4.3e-18 Score=174.51 Aligned_cols=309 Identities=10% Similarity=-0.003 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Q 004243 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALE 415 (766)
Q Consensus 336 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 415 (766)
.|...+++. +++.+|..+|.++...|++++|++.|.++ +++..+...+..+...|++++|+.+++.+.+..
T Consensus 21 ~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~ 91 (449)
T 1b89_A 21 RAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 91 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 366666666 33468899999999999999999999764 445556667888888999999999888888754
Q ss_pred CCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHH
Q 004243 416 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 495 (766)
Q Consensus 416 p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 495 (766)
++ + .+...++.++...|++.++..++ ..| +..+|..+|..+...|+|++
T Consensus 92 ~~-~------~i~~~Li~~Y~Klg~l~e~e~f~-----------------------~~p-n~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 92 RE-S------YVETELIFALAKTNRLAELEEFI-----------------------NGP-NNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ------------------------CHHHHTTTT-----------------------TCC-----------------CTTT
T ss_pred cc-c------hhHHHHHHHHHHhCCHHHHHHHH-----------------------cCC-cHHHHHHHHHHHHHcCCHHH
Confidence 33 3 24555677777778777765333 023 33588889999999999999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 004243 496 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEAL 575 (766)
Q Consensus 496 A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 575 (766)
|...|.++ ..|..+|.++.++|++++|++.++++. +
T Consensus 141 A~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~-----~------------------------------- 176 (449)
T 1b89_A 141 AKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN-----S------------------------------- 176 (449)
T ss_dssp HHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----C-------------------------------
T ss_pred HHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC-----C-------------------------------
Confidence 99999865 478888999999999999999998882 2
Q ss_pred hchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHH
Q 004243 576 RCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 655 (766)
Q Consensus 576 ~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 655 (766)
+.+|...+.++...|+++.|..+....+ .+++-...+...|.+.|++++|+..+++++..++....++.
T Consensus 177 ---------~~~Wk~v~~aCv~~~ef~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ft 245 (449)
T 1b89_A 177 ---------TRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 245 (449)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred ---------chhHHHHHHHHHHcCcHHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHH
Confidence 3335555555666666666655444311 23333444556666666666666666666666666666666
Q ss_pred HHh------hhcCHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc------------CC
Q 004243 656 KRS------EYSDREMAKNDLNMATQLDP-----LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF------------KP 712 (766)
Q Consensus 656 ~~~------~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p 712 (766)
.++ ..++..+.++.|...+.+.| .++..|..+..+|.+.++++.|+...-+.... .+
T Consensus 246 el~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv 325 (449)
T 1b89_A 246 ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV 325 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhch
Confidence 555 22444555555555555656 56777777777777778877777654443222 33
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004243 713 DL-QMLHLRAAFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 713 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al 741 (766)
.+ +.+|.....|. +....++..+..++
T Consensus 326 ~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 326 ANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp SSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 33 33333334443 44445566666666
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.74 E-value=7.9e-17 Score=160.13 Aligned_cols=179 Identities=12% Similarity=0.039 Sum_probs=159.1
Q ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccc
Q 004243 345 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMM 420 (766)
Q Consensus 345 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 420 (766)
.+.+|+++..++.+|..++..|++++|+..|+++++..|+ +..++.+|.++...|++++|+..|+++++..|+++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 4568899999999999999999999999999999999994 456677999999999999999999999999997753
Q ss_pred ccccchhhhHHhHHHHH--------HhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHH------------
Q 004243 421 FHGRVSGDHLVKLLNHH--------VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR------------ 480 (766)
Q Consensus 421 ~~~~~~a~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~------------ 480 (766)
. ..++..+|.++.. .+++++|. ..++++++..|+++.+.
T Consensus 88 ~---~~a~~~lg~~~~~~~~~~~~~~~~~~~A~------------------~~~~~~l~~~p~~~~~~~a~~~~~~~~~~ 146 (261)
T 3qky_A 88 V---PQAEYERAMCYYKLSPPYELDQTDTRKAI------------------EAFQLFIDRYPNHELVDDATQKIRELRAK 146 (261)
T ss_dssp H---HHHHHHHHHHHHHHCCCTTSCCHHHHHHH------------------HHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHhcccccccchhHHHHH------------------HHHHHHHHHCcCchhHHHHHHHHHHHHHH
Confidence 1 2578899999998 89999984 55689999999887766
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHhcCCC---chhhHHHHHHHHHHC----------CCHHHHHHHHHHHHcccc
Q 004243 481 -----FRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDT----------GHREEALSRAEKSISIER 542 (766)
Q Consensus 481 -----~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p 542 (766)
+.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 88899999999999999999999999998 567999999999977 999999999999999999
Q ss_pred ch
Q 004243 543 TF 544 (766)
Q Consensus 543 ~~ 544 (766)
++
T Consensus 227 ~~ 228 (261)
T 3qky_A 227 DS 228 (261)
T ss_dssp TC
T ss_pred CC
Confidence 88
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.74 E-value=3.5e-17 Score=156.16 Aligned_cols=176 Identities=14% Similarity=0.020 Sum_probs=151.9
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHH----------------HHHHHHHhccHHHHHHHHHHHHHh
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQG----------------LARVYYLKNELKAAYDEMTKLLEK 646 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~l~~ 646 (766)
...+...|..+...|++++|+..|+++++.+ ++.+++. +|.++...|++++|+..|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3457788999999999999999999999985 4567888 999999999999999999999999
Q ss_pred ccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCChHHHHHH
Q 004243 647 AQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK--EVEAVEELSKAIAFKPDLQMLHLR 720 (766)
Q Consensus 647 ~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~l 720 (766)
+|++..++..+| ..|++++|+..|+++++++|+++.++..+|.+|...|+ ...+...+++++...|....++.+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 163 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 999999999999 57999999999999999999999999999999987754 556778888887655555567789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q 004243 721 AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 761 (766)
Q Consensus 721 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 761 (766)
|.++...|++++|+..|+++++++|+ .++...+.++....
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~i~~~~ 203 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILRIE 203 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH
Confidence 99999999999999999999999997 55666677765444
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.73 E-value=3.2e-17 Score=185.60 Aligned_cols=204 Identities=10% Similarity=-0.074 Sum_probs=172.7
Q ss_pred hcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHH--------ccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHh
Q 004243 505 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSI--------SIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALR 576 (766)
Q Consensus 505 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 576 (766)
..+|+++.+++..| ...|++++|++.+++++ +.+|++
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-------------------------------- 432 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSES-------------------------------- 432 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTC--------------------------------
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccc--------------------------------
Confidence 56788888888777 78999999999999999 777776
Q ss_pred chhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHH
Q 004243 577 CPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 654 (766)
Q Consensus 577 ~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 654 (766)
..++..+|.++...|++++|+..|+++++. ++..+|+++|.++...|++++|+..|+++++.+|++..++
T Consensus 433 --------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 504 (681)
T 2pzi_A 433 --------VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPK 504 (681)
T ss_dssp --------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred --------hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 677899999999999999999999999998 5678999999999999999999999999999999999999
Q ss_pred HHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCC
Q 004243 655 EKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGD 729 (766)
Q Consensus 655 ~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~ 729 (766)
..+| ..|++++ +..|+++++++|+++.+++++|.++...|++++|+..|+++++++|++ ..++++|.++...|+
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999 5799999 999999999999999999999999999999999999999999999998 556689999877665
Q ss_pred -----HHHHHHHHHHHHccCCCChhHHH
Q 004243 730 -----LTSAIRDSQAALCLDPNHMETLD 752 (766)
Q Consensus 730 -----~~~A~~~~~~al~~~p~~~~~~~ 752 (766)
.+...+..+....+.++.++...
T Consensus 584 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~ 611 (681)
T 2pzi_A 584 TSEVTEEQIRDAARRVEALPPTEPRVLQ 611 (681)
T ss_dssp ---CCHHHHHHHHHHHHTSCTTSTTHHH
T ss_pred CCCCCHHHHHHHHHHHhhCCCCcHHHHH
Confidence 22333333333344455544433
No 99
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.73 E-value=7.4e-16 Score=162.30 Aligned_cols=240 Identities=11% Similarity=0.017 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCC---C----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccc-ccccc
Q 004243 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL---S----VDCLELRAWLFIAADDYESALRDTLALLALESNYMM-FHGRV 425 (766)
Q Consensus 354 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~ 425 (766)
.++.+|..+...|++++|+..|++++++.+ + ...++.+|.++...|++++|+..+++++++.+.... ....+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 577899999999999999999999998743 1 223555999999999999999999999998776543 22345
Q ss_pred hhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCC------CChhHHHHHHHHHHhcCCHHHHHHH
Q 004243 426 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP------GKSFLRFRQSLLLLRLNCQKAAMRC 499 (766)
Q Consensus 426 ~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~ 499 (766)
.++..+|.++...|++++|..++ .++++..+ ....++.++|.+|...|++++|+..
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHL------------------EAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 68889999999999999996444 56655422 2346788999999999999999999
Q ss_pred HHHHHh-----cCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 004243 500 LRLARN-----HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEA 574 (766)
Q Consensus 500 ~~~a~~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 574 (766)
++++++ .+|..+.++..+|.++...|++++|+..+++++++.+.. + ++.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------~-~~~------------ 298 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR-------------S-HKF------------ 298 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT-------------C-CSC------------
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------------C-CHH------------
Confidence 999999 778888999999999999999999999999999876542 0 000
Q ss_pred HhchhhccccchhHHhhHHHHHHhCC---HHHHHHHHHHHHcc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004243 575 LRCPSDGLRKGQALNNLGSIYVECGK---LDQAENCYINALDI-KHTRAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (766)
Q Consensus 575 ~~~~~~~l~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 646 (766)
-...+..++.++...++ +.+|+..+++.-.. .....+..+|.+|...|++++|...|+++++.
T Consensus 299 ---------~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 299 ---------YKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp ---------HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 01123455666666666 66777777663222 22346677888888888888888888888765
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.73 E-value=8.3e-16 Score=153.26 Aligned_cols=219 Identities=8% Similarity=-0.001 Sum_probs=191.9
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCchhhHHHHHHHH----HHC---CCHHHHHHH
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLN--CQKAAMRCLRLARNHSSSEHERLVYEGWIL----YDT---GHREEALSR 533 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~----~~~---g~~~~A~~~ 533 (766)
+..+.+++.++|++..+|..++.++..+| ++++++..++.++..+|.+..+|..++.++ ... +++++++..
T Consensus 53 L~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~ 132 (306)
T 3dra_A 53 LHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDI 132 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHH
T ss_pred HHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 67789999999999999999999999999 999999999999999999999999999999 777 899999999
Q ss_pred HHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHH--HHHHHHHHH
Q 004243 534 AEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLD--QAENCYINA 611 (766)
Q Consensus 534 ~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~--~A~~~~~~a 611 (766)
++++++.+|.+ ..+|+..+.++...|.++ ++++.++++
T Consensus 133 ~~~~l~~~pkn----------------------------------------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~ 172 (306)
T 3dra_A 133 LEAMLSSDPKN----------------------------------------HHVWSYRKWLVDTFDLHNDAKELSFVDKV 172 (306)
T ss_dssp HHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCC----------------------------------------HHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 99999999998 455666677777777777 999999999
Q ss_pred HccC--ChHHHHHHHHHHHHhcc------HHHHHHHHHHHHHhccCCHHHHHHHh----hhcCH-HHHHHHHHHHHhcC-
Q 004243 612 LDIK--HTRAHQGLARVYYLKNE------LKAAYDEMTKLLEKAQYSASAFEKRS----EYSDR-EMAKNDLNMATQLD- 677 (766)
Q Consensus 612 l~~~--~~~~~~~la~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~-~~A~~~~~~al~~~- 677 (766)
++.+ +..+|...+.+....+. ++++++.+.+++..+|++..+|..++ ..|+. +.......+++.++
T Consensus 173 i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 173 IDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp HHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred HHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence 9984 55799999999999887 99999999999999999999998888 34553 44556777777766
Q ss_pred --CCCchhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCChHHHH-HHH
Q 004243 678 --PLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA-FKPDLQMLH-LRA 721 (766)
Q Consensus 678 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~-~la 721 (766)
|.++.++..+|.++.+.|+.++|+++|+.+.+ .+|-...++ .++
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 88899999999999999999999999999997 799885544 444
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.73 E-value=5.7e-17 Score=154.72 Aligned_cols=179 Identities=13% Similarity=0.075 Sum_probs=118.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHH----------------HHHHHHHCCCHHHHHHHHHHHHc
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY----------------EGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
.+..++..|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35566778888888888888888888888888888888777 66666666666666666666666
Q ss_pred cccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--Ch
Q 004243 540 IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HT 617 (766)
Q Consensus 540 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 617 (766)
++|++ ..++..+|.++...|++++|+..|+++++++ ++
T Consensus 83 ~~p~~----------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 83 KAPNN----------------------------------------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HCTTC----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HCCCC----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 66665 4445556666666666666666666666652 34
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
.+++++|.++...|+.+ ...+...+++++...| ...+++.+|.++...|++
T Consensus 123 ~a~~~lg~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~ 173 (208)
T 3urz_A 123 AANIFLGNYYYLTAEQE----------------------------KKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRY 173 (208)
T ss_dssp HHHHHHHHHHHHHHHHH----------------------------HHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhHHH----------------------------HHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCH
Confidence 55666666655544321 1233344444433222 234677889999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHH
Q 004243 698 VEAVEELSKAIAFKPDLQMLHLRAAF 723 (766)
Q Consensus 698 ~~A~~~~~~al~~~p~~~~~~~la~~ 723 (766)
++|+.+|+++++++|+......+..+
T Consensus 174 ~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 174 EKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999998665555443
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=2.6e-16 Score=152.34 Aligned_cols=209 Identities=13% Similarity=0.047 Sum_probs=159.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---hhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 551 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~ 551 (766)
.+..++.+|..+...|++++|+..|+++++..|.++ .+++.+|.++...|++++|+..|+++++.+|++ .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~----- 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----- 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH-----
Confidence 467789999999999999999999999999988764 689999999999999999999999999999987 10
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhc
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKN 631 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g 631 (766)
+.+++.+|.++...|.. ....+..++..+...|
T Consensus 78 ---------------------------------~~a~~~~g~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 110 (225)
T 2yhc_A 78 ---------------------------------DYVMYMRGLTNMALDDS--------------ALQGFFGVDRSDRDPQ 110 (225)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHC----------------------------CCH
T ss_pred ---------------------------------HHHHHHHHHHHHhhhhh--------------hhhhhhccchhhcCcH
Confidence 13456666666554431 1123445667777788
Q ss_pred cHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 004243 632 ELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK 711 (766)
Q Consensus 632 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 711 (766)
++++|+..|+++++..|++..++..+...+.... ........+|.+|...|++++|+..|+++++..
T Consensus 111 ~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 111 QARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY 177 (225)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC
Confidence 9999999999999999988776543332111111 112345678999999999999999999999999
Q ss_pred CChH----HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChh
Q 004243 712 PDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHME 749 (766)
Q Consensus 712 p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 749 (766)
|+++ .++.+|.++..+|++++|++.++++....|++.+
T Consensus 178 p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 178 PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 9874 4668999999999999999999999999998754
No 103
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.72 E-value=1.3e-15 Score=160.09 Aligned_cols=311 Identities=12% Similarity=-0.024 Sum_probs=222.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH------HHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccch
Q 004243 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD------CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 426 (766)
Q Consensus 353 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 426 (766)
.++..+|.++...|++++|+..+++++...|... .+..+|.++...|++++|+..+++++.+.|..........
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4556777888888888888888888887766322 2334788888888888888888888887665543223334
Q ss_pred hhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcC--------CCChhHHHHHHHHHHhcCCHHHHHH
Q 004243 427 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--------PGKSFLRFRQSLLLLRLNCQKAAMR 498 (766)
Q Consensus 427 a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~ 498 (766)
++..+|.++...|++++|...+ .+++... |....++..+|.++...|++++|..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQ------------------EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHH------------------HHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5677888888888888875333 4444432 3345677889999999999999999
Q ss_pred HHHHHHhcCCCc-----hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch--H-HHHHHHHHHHhcCCCCCChHHHHHH
Q 004243 499 CLRLARNHSSSE-----HERLVYEGWILYDTGHREEALSRAEKSISIERTF--E-AFFLKAYILADTNLDPESSTYVIQL 570 (766)
Q Consensus 499 ~~~~a~~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~-~~~~~~~~l~~~~~~~~~~~~~~~~ 570 (766)
.+++++...+.. ..++..+|.++...|++++|...+++++.+.+.. . .+.
T Consensus 157 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~---------------------- 214 (373)
T 1hz4_A 157 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI---------------------- 214 (373)
T ss_dssp HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH----------------------
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH----------------------
Confidence 999999887642 4568889999999999999999999998764332 0 000
Q ss_pred HHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC------hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004243 571 LEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH------TRAHQGLARVYYLKNELKAAYDEMTKLL 644 (766)
Q Consensus 571 ~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l 644 (766)
......++.++...|++++|...+++++...+ ...+..+|.++...|++++|...+++++
T Consensus 215 --------------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 215 --------------SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 01112345668899999999999999988732 2256889999999999999999999988
Q ss_pred HhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004243 645 EKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFY 724 (766)
Q Consensus 645 ~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~ 724 (766)
...+..... +....++..+|.++...|++++|...+++++.+.+.... ...+
T Consensus 281 ~~~~~~~~~------------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~----~~~~ 332 (373)
T 1hz4_A 281 ENARSLRLM------------------------SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF----ISHF 332 (373)
T ss_dssp HHHHHTTCH------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC----CHHH
T ss_pred HHHHhCcch------------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccH----HHHH
Confidence 764321100 011246777899999999999999999999876443211 1112
Q ss_pred HHcCCHHHHHHHHHHHHccCCCC
Q 004243 725 ESIGDLTSAIRDSQAALCLDPNH 747 (766)
Q Consensus 725 ~~~g~~~~A~~~~~~al~~~p~~ 747 (766)
...| +.....+++.+...|-+
T Consensus 333 ~~~g--~~~~~ll~~~~~~~~~~ 353 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLNTLP 353 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTTCSC
T ss_pred HHcc--HHHHHHHHHHHhCCCCc
Confidence 2222 56777788888888863
No 104
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=170.25 Aligned_cols=257 Identities=10% Similarity=0.017 Sum_probs=184.7
Q ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc--
Q 004243 347 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--------KL-SVDCLELRAWLFIAADDYESALRDTLALLALE-- 415 (766)
Q Consensus 347 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-- 415 (766)
.+|....++..+|.++...|++++|+..+++++++ .| ....+..+|.++...|++++|+..+++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999999985 33 23335559999999999999999999999874
Q ss_pred ---CCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHc--------CCCChhHHHHHH
Q 004243 416 ---SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN--------DPGKSFLRFRQS 484 (766)
Q Consensus 416 ---p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~--------~p~~~~~~~~la 484 (766)
++++. ...++..+|.++...|++++|..++ .++++. .|....++..+|
T Consensus 102 ~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~------------------~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 102 TLGKDHPA---VAATLNNLAVLYGKRGKYKEAEPLC------------------KRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp HHCTTCHH---HHHHHHHHHHHHHTTTCHHHHHHHH------------------HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhCCCChH---HHHHHHHHHHHHHHcCcHHHHHHHH------------------HHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 22221 1257888999999999999996444 555554 355677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc--------CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHh
Q 004243 485 LLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 556 (766)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 556 (766)
.++...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++..|... +..
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~ 232 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE--------FGS 232 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH--------HC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCC
Confidence 9999999999999999999987 677788999999999999999999999999998655420 000
Q ss_pred cCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHH
Q 004243 557 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELK 634 (766)
Q Consensus 557 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~ 634 (766)
........ ......+...+..+...+.+.+|...++++.... .+.++..+|.++...|+++
T Consensus 233 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 295 (311)
T 3nf1_A 233 VDDENKPI-----------------WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFE 295 (311)
T ss_dssp -----CCH-----------------HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHH
T ss_pred CCcchHHH-----------------HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHH
Confidence 00000000 0002234445555666677777777888777663 4468899999999999999
Q ss_pred HHHHHHHHHHHhccC
Q 004243 635 AAYDEMTKLLEKAQY 649 (766)
Q Consensus 635 ~A~~~~~~~l~~~p~ 649 (766)
+|...+++++++.|+
T Consensus 296 ~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 296 AAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988764
No 105
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.71 E-value=1.8e-16 Score=160.11 Aligned_cols=207 Identities=10% Similarity=0.009 Sum_probs=142.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCC---C----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHH
Q 004243 359 AVAKMEEGQIRAAISEIDRIIVFKL---S----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 431 (766)
Q Consensus 359 a~~~~~~g~~~~A~~~~~~al~~~~---~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 431 (766)
|.+|...|++++|+..|++++.+.+ + ...+..+|.+|..+|++++|+..|++++.+.|....
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~----------- 112 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ----------- 112 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----------
Confidence 4566677777777777777776543 1 123444777777777777777777777766543321
Q ss_pred hHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCc
Q 004243 432 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL-NCQKAAMRCLRLARNHSSSE 510 (766)
Q Consensus 432 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~ 510 (766)
... ...++..+|.+|... |++++|+..|++++++.|..
T Consensus 113 ---------~~~--------------------------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~ 151 (292)
T 1qqe_A 113 ---------FRR--------------------------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151 (292)
T ss_dssp ---------HHH--------------------------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ---------HHH--------------------------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC
Confidence 111 134677899999996 99999999999999987754
Q ss_pred ------hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc
Q 004243 511 ------HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 583 (766)
Q Consensus 511 ------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 583 (766)
..++..+|.++...|++++|+..|++++++.|+. ...+ .
T Consensus 152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------------------~ 197 (292)
T 1qqe_A 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW----------------------------------S 197 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG----------------------------------G
T ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH----------------------------------H
Confidence 4678899999999999999999999999998875 1000 0
Q ss_pred cchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChH-------HHHHHHHHHH--HhccHHHHHHHHHHHHHhccCCH
Q 004243 584 KGQALNNLGSIYVECGKLDQAENCYINALDIKHTR-------AHQGLARVYY--LKNELKAAYDEMTKLLEKAQYSA 651 (766)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~la~~~~--~~g~~~~A~~~~~~~l~~~p~~~ 651 (766)
...++.++|.++...|++++|+..|++++++++.. .+..++..+. ..+++++|+..|++++.++|.+.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 02357889999999999999999999999985421 2333444432 23445555555555555544443
No 106
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.70 E-value=3.3e-15 Score=157.13 Aligned_cols=269 Identities=15% Similarity=0.053 Sum_probs=198.1
Q ss_pred hhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChh-----HHHHHHHHHHhcCCHHHHHHHHH
Q 004243 427 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF-----LRFRQSLLLLRLNCQKAAMRCLR 501 (766)
Q Consensus 427 a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~ 501 (766)
+...++.++...|+++.|. ..+.+++...|.... ++..+|.++...|++++|+..++
T Consensus 16 ~~~~~a~~~~~~g~~~~A~------------------~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 77 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAE------------------RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQ 77 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHH------------------HHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHH------------------HHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4555666666667777664 334666766654432 56677888888888888888888
Q ss_pred HHHhcCCCch------hhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 004243 502 LARNHSSSEH------ERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEAL 575 (766)
Q Consensus 502 ~a~~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 575 (766)
+++...|... .++..+|.++...|++++|+..+++++++.+.. + .+..
T Consensus 78 ~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-------------~-~~~~------------ 131 (373)
T 1hz4_A 78 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ-------------H-LEQL------------ 131 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------T-CTTS------------
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-------------c-cccC------------
Confidence 8777654332 235677888888888888888888887754321 0 0000
Q ss_pred hchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Q 004243 576 RCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH-------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 648 (766)
Q Consensus 576 ~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 648 (766)
.....++.++|.++...|++++|...+++++...+ ..++..+|.++...|++++|...+++++...+
T Consensus 132 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 132 ------PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp ------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred ------cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 00034578899999999999999999999998721 24788999999999999999999999987753
Q ss_pred C--CHHHHH-----HHh----hhcCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 004243 649 Y--SASAFE-----KRS----EYSDREMAKNDLNMATQLDPLR----TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 713 (766)
Q Consensus 649 ~--~~~~~~-----~~~----~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 713 (766)
. ....+. ..+ ..|++++|...+++++...|.. ...+..+|.++...|++++|...+++++...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 206 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 3 211111 122 5699999999999999877654 225678999999999999999999999877432
Q ss_pred -----h--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004243 714 -----L--QMLHLRAAFYESIGDLTSAIRDSQAALCLDP 745 (766)
Q Consensus 714 -----~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 745 (766)
. ..+..+|.++...|++++|...+++++.+.+
T Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 1 2444789999999999999999999998765
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.70 E-value=2.4e-17 Score=147.92 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=104.6
Q ss_pred hhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHH
Q 004243 590 NLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAK 667 (766)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~ 667 (766)
.||.++...|++++|+..+++++... .+..++.+|.+|...|++++|++.|+++++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---------------------- 59 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---------------------- 59 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------
Confidence 35666677777777777777777663 334566777777777777666666555554
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHH-HHHHHccCC
Q 004243 668 NDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRD-SQAALCLDP 745 (766)
Q Consensus 668 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p 745 (766)
++|+++.+|..+|.++...|++++|+..|+++++++|++ ..++.+|.++...|++++|... ++++++++|
T Consensus 60 --------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 60 --------VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp --------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred --------hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 556667778888889999999999999999999999988 4556889999999998877665 589999999
Q ss_pred CChhHHHHHHHHHHhh
Q 004243 746 NHMETLDLYNRARDQA 761 (766)
Q Consensus 746 ~~~~~~~~l~~~~~~~ 761 (766)
+++.++..++++....
T Consensus 132 ~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 132 GSPAVYKLKEQLLDCE 147 (150)
T ss_dssp TCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999988887776543
No 108
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=1.8e-17 Score=169.91 Aligned_cols=291 Identities=13% Similarity=0.031 Sum_probs=145.3
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhh
Q 004243 361 AKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRS 440 (766)
Q Consensus 361 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~ 440 (766)
.....|+.++|.+.+++. +.+..|..+|..+.+.|++++|++.|.++ +++ .++..++......|.
T Consensus 12 ll~~~~~ld~A~~fae~~----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~------~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP------SSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCH------HHHHHHHHHHHhCCC
Confidence 345778899999999988 44567888999999999999999999764 233 255566667777888
Q ss_pred hchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHH
Q 004243 441 WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 520 (766)
Q Consensus 441 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~ 520 (766)
+++|..++ +.+.+..+ ++.+...++.+|.++|++.++.+.++. |+ ..+|..+|..
T Consensus 77 ~EeAi~yl------------------~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~ 131 (449)
T 1b89_A 77 WEELVKYL------------------QMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDR 131 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTTC-----C------------
T ss_pred HHHHHHHH------------------HHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHH
Confidence 88886433 55555433 366778889999999999998877742 43 4589999999
Q ss_pred HHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCC
Q 004243 521 LYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK 600 (766)
Q Consensus 521 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~ 600 (766)
+...|+|++|..+|.++ + .|..+|.++..+|+
T Consensus 132 ~~~~g~yeeA~~~Y~~a-----~-------------------------------------------n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV-----S-------------------------------------------NFGRLASTLVHLGE 163 (449)
T ss_dssp -----CTTTHHHHHHHT-----T-------------------------------------------CHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHHh-----h-------------------------------------------hHHHHHHHHHHhcc
Confidence 99999999999999876 1 28899999999999
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHH-HHHhhhcCHHHHHHHHHHHHhcCCC
Q 004243 601 LDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF-EKRSEYSDREMAKNDLNMATQLDPL 679 (766)
Q Consensus 601 ~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~ 679 (766)
+++|++.++++ +++.+|.....++...|+++.|..+...++ .+|+..... ......|++++|+..+++++.+++.
T Consensus 164 yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 164 YQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp HHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 99999999999 578999999999999999999987776533 555543321 2223679999999999999999999
Q ss_pred CchhHHHHHHHHHhC--CCHHHHHHHHHHHHhcCC-----Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 680 RTYPYRYRAAVLMDD--QKEVEAVEELSKAIAFKP-----DL-QMLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 680 ~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p-----~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
...++..+|.+|.+- ++..++++.|...+.+.| .. ..|..+..+|.+.++++.|+...-.....
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChh
Confidence 999999999988765 778888888887777766 33 45668899999999999999877665544
No 109
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.68 E-value=1.2e-15 Score=142.52 Aligned_cols=167 Identities=16% Similarity=0.120 Sum_probs=155.5
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS---- 658 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~---- 658 (766)
...+..+|.++...|++++|+..|+++++. ..+.++..+|.++...|++++|...++++++..|++..++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456889999999999999999999999988 35678999999999999999999999999999999999998888
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHH
Q 004243 659 EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDS 737 (766)
Q Consensus 659 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~ 737 (766)
..|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++ ..+..+|.++...|++++|+..+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999988 55668999999999999999999
Q ss_pred HHHHccCCCChhHH
Q 004243 738 QAALCLDPNHMETL 751 (766)
Q Consensus 738 ~~al~~~p~~~~~~ 751 (766)
+++++++|+++...
T Consensus 168 ~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 168 KKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHCCCGGG
T ss_pred HHHHHcCCCchhhH
Confidence 99999999886543
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.68 E-value=9.2e-17 Score=144.11 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhchhhcccc----chhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHH
Q 004243 565 TYVIQLLEEALRCPSDGLRK----GQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYD 638 (766)
Q Consensus 565 ~~~~~~~~~A~~~~~~~l~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~ 638 (766)
....+++++|++.+++++.. +..++.+|.+|...|++++|+..|++++++ +++.+|..+|.++...|++++|+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 34467999999999999772 478899999999999999999999999999 467899999999999999988888
Q ss_pred HHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHH-HHHHHhcCCChHHH
Q 004243 639 EMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEE-LSKAIAFKPDLQML 717 (766)
Q Consensus 639 ~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~ 717 (766)
.|+++++++| +++.++..+|.++...|++++|.+. ++++++++|+++..
T Consensus 87 ~~~~al~~~p------------------------------~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 87 CYRRSVELNP------------------------------TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHHHHHHHCT------------------------------TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHhCC------------------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 8777776655 5556667777788888888776655 47888888887554
Q ss_pred H-HHHHHHHHcCC
Q 004243 718 H-LRAAFYESIGD 729 (766)
Q Consensus 718 ~-~la~~~~~~g~ 729 (766)
+ .++.++...|+
T Consensus 137 ~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 137 YKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCc
Confidence 4 66777776664
No 111
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=6.4e-13 Score=147.36 Aligned_cols=383 Identities=10% Similarity=-0.049 Sum_probs=234.9
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCC---HHHHHHHHHHHHccC---CCHHHHHHHHHHHHhhhh--------HH
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQ---IRAAISEIDRIIVFK---LSVDCLELRAWLFIAADD--------YE 402 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~---~~~~~~~~~a~~~~~~g~--------~~ 402 (766)
+...|++++...|.....|...+......|+ ++.+...|++++... |+...|..........++ .+
T Consensus 85 aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~ 164 (679)
T 4e6h_A 85 VYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARN 164 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHH
Confidence 7889999999999999999999999999999 999999999999988 777665554444333332 23
Q ss_pred HHHHHHHHHHhc----cCCcccccccchhhhHHhHHH---------HHHhhhchHhhHHHhhhhhcccCccccHHHHHHH
Q 004243 403 SALRDTLALLAL----ESNYMMFHGRVSGDHLVKLLN---------HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 469 (766)
Q Consensus 403 ~A~~~~~~al~~----~p~~~~~~~~~~a~~~l~~~~---------~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~a 469 (766)
...+.|++++.. +|.... .+....... ...+..+.+.. .|.++
T Consensus 165 ~vr~~FErAl~~vG~~d~~s~~------iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~------------------iy~ra 220 (679)
T 4e6h_A 165 IVIQAFQVVVDKCAIFEPKSIQ------FWNEYLHFLEHWKPVNKFEEQQRVQYIRK------------------LYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHH------HHHHHHHHHHTCCCCSHHHHHHHHHHHHH------------------HHHHH
T ss_pred HHHHHHHHHHHHhCcccccchH------HHHHHHHHHHhccccCcHHHHhHHHHHHH------------------HHHHH
Confidence 445788888864 444332 221111111 11122222221 12222
Q ss_pred HHcCCCCh-hHHHHH-------------HHHHHhcCCHHHHHHHHHHH------Hhc-CCCc------------------
Q 004243 470 LINDPGKS-FLRFRQ-------------SLLLLRLNCQKAAMRCLRLA------RNH-SSSE------------------ 510 (766)
Q Consensus 470 l~~~p~~~-~~~~~l-------------a~~~~~~g~~~~A~~~~~~a------~~~-~p~~------------------ 510 (766)
+....... ..|... ..+-....+|..|...+... +.. .|..
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 22100000 000000 00000111233333333221 000 0100
Q ss_pred -hhhHHHHHHHHHHCC-------CHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHH-hchhh
Q 004243 511 -HERLVYEGWILYDTG-------HREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL-RCPSD 580 (766)
Q Consensus 511 -~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~-~~~~~ 580 (766)
...|..........+ ..+.....|++++...|.+ +.|...+..+...+ ..++|. +.|++
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~-----------~~~~a~r~il~r 369 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKN-----------TDSTVITKYLKL 369 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS-----------CCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------cHHHHHHHHHHH
Confidence 012222222111111 0122344555555555555 55555555444443 112222 33333
Q ss_pred ccc--c--chhHHhhHHHHHHhCCHHHHHHHHHHHHccC-----------C-------------hHHHHHHHHHHHHhcc
Q 004243 581 GLR--K--GQALNNLGSIYVECGKLDQAENCYINALDIK-----------H-------------TRAHQGLARVYYLKNE 632 (766)
Q Consensus 581 ~l~--~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------~-------------~~~~~~la~~~~~~g~ 632 (766)
++. | ...|...+......|++++|...|++++..- + ..+|...+....+.|+
T Consensus 370 Ai~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 370 GQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 322 1 3557778888888899999999999988641 1 2478888888888999
Q ss_pred HHHHHHHHHHHHHh-ccCCHHHHHHHh----h-hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHH
Q 004243 633 LKAAYDEMTKLLEK-AQYSASAFEKRS----E-YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSK 706 (766)
Q Consensus 633 ~~~A~~~~~~~l~~-~p~~~~~~~~~~----~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 706 (766)
.+.|...|.++++. .+....+|...+ . .++.+.|...|+.+++..|+++..|...+......|+.+.|...|++
T Consensus 450 l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 450 LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999987 444556666555 2 24589999999999999999999999999999999999999999999
Q ss_pred HHhcCCC---h-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHH
Q 004243 707 AIAFKPD---L-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 754 (766)
Q Consensus 707 al~~~p~---~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 754 (766)
++...|+ . ..|......-...|+.+.+.+.++++.+..|+++......
T Consensus 530 al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~ 581 (679)
T 4e6h_A 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFT 581 (679)
T ss_dssp HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 9999874 3 3344667777888999999999999999999987665443
No 112
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=1.9e-15 Score=141.01 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=152.5
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhH
Q 004243 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 430 (766)
Q Consensus 352 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~ 430 (766)
...+..+|.++...|++++|+..++++++..| +...+..+|.++...|++++|+..++++++..|++. .++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV------KVATV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHH
Confidence 46778889999999999999999999998888 444555699999999999999999999999998887 47888
Q ss_pred HhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 004243 431 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (766)
Q Consensus 431 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 510 (766)
++.++...+++++|. ..+++++...|.++.++..+|.++...|++++|+..++++++..|.+
T Consensus 82 ~a~~~~~~~~~~~A~------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 82 LGLTYVQVQKYDLAV------------------PLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHTCHHHHH------------------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCHHHHH------------------HHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 899999999999885 44588888999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 511 HERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
+.++..+|.++...|++++|+..++++++.+|++
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999998876
No 113
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.66 E-value=1.5e-14 Score=144.70 Aligned_cols=228 Identities=9% Similarity=-0.032 Sum_probs=187.6
Q ss_pred HhcCCHH-HHHHHHHHHHhcCCCchhhHHHHHHHHHHCCC----------HHHHHHHHHHHHccccchHHHHHHHHHHHh
Q 004243 488 LRLNCQK-AAMRCLRLARNHSSSEHERLVYEGWILYDTGH----------REEALSRAEKSISIERTFEAFFLKAYILAD 556 (766)
Q Consensus 488 ~~~g~~~-~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 556 (766)
...|.+. +|+..+.+++..+|++..+|+..+.++...|. +++++..++.++..+|.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn------------ 107 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------------ 107 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------------
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC------------
Confidence 3455554 79999999999999999999999999988776 688999999999999988
Q ss_pred cCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhC--CHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhcc
Q 004243 557 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECG--KLDQAENCYINALDIK--HTRAHQGLARVYYLKNE 632 (766)
Q Consensus 557 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~ 632 (766)
..+|+..+.++...| .+++++.++.++++.+ +..+|...+.+....|.
T Consensus 108 ----------------------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~ 159 (331)
T 3dss_A 108 ----------------------------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV 159 (331)
T ss_dssp ----------------------------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ----------------------------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Confidence 455666666666666 4899999999999984 56799999999999998
Q ss_pred -HHHHHHHHHHHHHhccCCHHHHHHHh----hh--------------cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 004243 633 -LKAAYDEMTKLLEKAQYSASAFEKRS----EY--------------SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMD 693 (766)
Q Consensus 633 -~~~A~~~~~~~l~~~p~~~~~~~~~~----~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 693 (766)
++++++.+.++++.+|.+..+|..++ .+ +.++++++++.+++..+|++..+|+.+..++..
T Consensus 160 ~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 160 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 69999999999999999999999888 22 447899999999999999999999877767666
Q ss_pred C-----------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH---HcCCHHHHHHHHHHHHccCCCChhHHHHHH
Q 004243 694 D-----------QKEVEAVEELSKAIAFKPDL-QMLHLRAAFYE---SIGDLTSAIRDSQAALCLDPNHMETLDLYN 755 (766)
Q Consensus 694 ~-----------g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 755 (766)
. +.++++++.+++++++.|++ ..+..++.+.. ..|..++....+.+..++||-...-|.-+.
T Consensus 240 ~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 240 GSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 6 46899999999999999998 22222332222 357889999999999999999877665543
No 114
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.66 E-value=1.3e-15 Score=153.10 Aligned_cols=217 Identities=18% Similarity=0.133 Sum_probs=154.9
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchH
Q 004243 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 545 (766)
|..+.++..+|.++...|++++|+..++++++. .|..+.++..+|.++...|++++|+..|++++++....
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 118 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV- 118 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-
Confidence 667889999999999999999999999999876 46668899999999999999999999999999863110
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--------CC-
Q 004243 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--------KH- 616 (766)
Q Consensus 546 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~- 616 (766)
..+.. .....++.++|.++...|++++|+..|+++++. .+
T Consensus 119 -------------~~~~~------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 119 -------------LGKFH------------------PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp -------------HCTTC------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred -------------cCCCC------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 00000 000466899999999999999999999999987 22
Q ss_pred -hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 004243 617 -TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 695 (766)
Q Consensus 617 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 695 (766)
..++..+|.++...|++++|+..++++++..+... .....+.....+..++..+...+
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 226 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE---------------------FGSVNGDNKPIWMHAEEREESKD 226 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH---------------------SSSCCSSCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---------------------CCCcchhHHHHHHHHHHHHhcCC
Confidence 35889999999999999999999999997743211 00123444555555555555443
Q ss_pred C------HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 696 K------EVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 696 ~------~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
. +.++...++......|.. ..+..+|.++...|++++|+..|++++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 227 KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 344444444433333444 33447788888888888888888887765
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.65 E-value=1.1e-14 Score=140.84 Aligned_cols=185 Identities=12% Similarity=-0.001 Sum_probs=152.3
Q ss_pred CchhHHHHHHHHhccCcH--HHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH----HHH
Q 004243 319 KPTGWMYQERSLYNLGRE--KIVDLNYASELDPTLS---FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD----CLE 389 (766)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~ 389 (766)
.+..++..|..++..|++ |+..|+++++..|+++ .+++.+|.++...|++++|+..|+++++..|+.. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 356778889999999986 9999999999999875 6899999999999999999999999999999432 466
Q ss_pred HHHHHHHh------------------hhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhh
Q 004243 390 LRAWLFIA------------------ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 451 (766)
Q Consensus 390 ~~a~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~ 451 (766)
.+|.++.. .|++++|+..|+++++.+|++.. +......+....+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~------a~~a~~~l~~~~~------------ 144 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY------TTDATKRLVFLKD------------ 144 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT------HHHHHHHHHHHHH------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh------HHHHHHHHHHHHH------------
Confidence 68888876 57999999999999999999984 2211111111100
Q ss_pred hhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---hhHHHHHHHHHHCCCHH
Q 004243 452 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHRE 528 (766)
Q Consensus 452 ~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~lg~~~~~~g~~~ 528 (766)
........+|.+|...|++++|+..|+++++..|+++ .++..+|.++..+|+++
T Consensus 145 -----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 145 -----------------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 0112346789999999999999999999999999875 68999999999999999
Q ss_pred HHHHHHHHHHccccch
Q 004243 529 EALSRAEKSISIERTF 544 (766)
Q Consensus 529 ~A~~~~~~al~~~p~~ 544 (766)
+|++.++++....|+.
T Consensus 202 ~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 202 QAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHhhCCCc
Confidence 9999999999888876
No 116
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.65 E-value=1.9e-15 Score=151.77 Aligned_cols=219 Identities=17% Similarity=0.089 Sum_probs=152.3
Q ss_pred hcCCHHHHHHHHHHHHhc--------CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCC
Q 004243 489 RLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLD 560 (766)
Q Consensus 489 ~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~ 560 (766)
..|++++|+..++++++. .|..+.++..+|.++...|++++|+..+++++++.... ..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~ 78 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT--------------LG 78 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------TC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--------------cC
Confidence 456677777777766652 36678899999999999999999999999999763110 00
Q ss_pred CCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc------C----ChHHHHHHHHHHHHh
Q 004243 561 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI------K----HTRAHQGLARVYYLK 630 (766)
Q Consensus 561 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~----~~~~~~~la~~~~~~ 630 (766)
.... ....++..+|.++...|++++|+..|++++.. . ...++.++|.++...
T Consensus 79 ~~~~------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 140 (283)
T 3edt_B 79 KDHP------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ 140 (283)
T ss_dssp TTCH------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred Ccch------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Confidence 0000 00456899999999999999999999999987 1 135889999999999
Q ss_pred ccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHH-hcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004243 631 NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMAT-QLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 631 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 709 (766)
|++++|+..++++++.. ++.. ...|....++..+|.++...|++++|+..++++++
T Consensus 141 g~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 141 GKAEEVEYYYRRALEIY-----------------------ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHH-----------------------HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-----------------------HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999988661 1110 11334467888999999999999999999999997
Q ss_pred c---------CCCh-HHHHHHHHHHHHcCC------HHHHHHHHHHHHccCCCChhHHHHHHHHHHhhh
Q 004243 710 F---------KPDL-QMLHLRAAFYESIGD------LTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 710 ~---------~p~~-~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 762 (766)
. .+.. ..+...+..+...+. +.++...++......|..+.++..++.+....+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 266 (283)
T 3edt_B 198 RAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQG 266 (283)
T ss_dssp HHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 6 3333 344456666655433 455555555555555666667777776665543
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.64 E-value=1.1e-15 Score=132.13 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=90.9
Q ss_pred hccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHH
Q 004243 646 KAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLR 720 (766)
Q Consensus 646 ~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~l 720 (766)
++|+....+..+| ..|++++|+..|+++++++|.++.+|.++|.++...|++++|+..|+++++++|++ ..++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444444444444 23455555555566666677788888999999999999999999999999999998 566699
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 721 AAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 721 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
|.++..+|++++|+..|+++++++|++++++..++++
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999888765
No 118
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.64 E-value=1.2e-13 Score=138.23 Aligned_cols=244 Identities=10% Similarity=0.003 Sum_probs=189.0
Q ss_pred hhcccHH-HHHHHHHHHHhcCccccHhHHHHHHHHhccHHHHHHHHhhhccCCCchhHHHHHHHHhccCcHHHHHHHHHH
Q 004243 267 FEREEYK-DACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYAS 345 (766)
Q Consensus 267 ~~~g~~~-~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 345 (766)
.+.|+++ +|+..+++++.++|.+..+ ...++.....+..- . .+.. ....-+.++..+++++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~yta-----Wn~Rr~iL~~l~~~---~---~~~~-------~~~~l~~EL~~~~~~L 101 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATL-----WNCRREVLQHLETE---K---SPEE-------SAALVKAELGFLESCL 101 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHH-----HHHHHHHHHHHHHH---S---CHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHH-----HHHHHHHHHHhccc---c---cchh-------hhHHHHHHHHHHHHHH
Confidence 3567775 7999999999999998766 44444444333311 0 0000 0001234899999999
Q ss_pred hcCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhccCCcccc
Q 004243 346 ELDPTLSFPYKYRAVAKMEEGQ--IRAAISEIDRIIVFKL-SVDCLELRAWLFIAADD-YESALRDTLALLALESNYMMF 421 (766)
Q Consensus 346 ~~~p~~~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 421 (766)
..+|++..+|..++.++...|+ +++++..++++++.+| +...|..++.+....|. ++++++.+.++++.+|.+..
T Consensus 102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S- 180 (331)
T 3dss_A 102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS- 180 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH-
T ss_pred HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH-
Confidence 9999999999999999999994 9999999999999999 67777779999999998 69999999999999999995
Q ss_pred cccchhhhHHhHHHHHH--------------hhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHH
Q 004243 422 HGRVSGDHLVKLLNHHV--------------RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 487 (766)
Q Consensus 422 ~~~~~a~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~ 487 (766)
++..++.+.... +.++++ +..+.+++..+|++..+|+.+..++
T Consensus 181 -----AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eE------------------le~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 181 -----SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE------------------LELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp -----HHHHHHHHHHHHSCCC------CCCHHHHHHH------------------HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhhccccccccccchHHHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888888877665 223333 6777999999999999998666565
Q ss_pred Hhc-----------CCHHHHHHHHHHHHhcCCCchhhHHHHHHHHH---HCCCHHHHHHHHHHHHccccch-HHHHHHHH
Q 004243 488 LRL-----------NCQKAAMRCLRLARNHSSSEHERLVYEGWILY---DTGHREEALSRAEKSISIERTF-EAFFLKAY 552 (766)
Q Consensus 488 ~~~-----------g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~ 552 (766)
... +.++++++.++++++..|++...+..++.+.. ..|..++....+.+.++++|.. ..|..+..
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 554 46899999999999999999655544444332 3678899999999999999998 55555443
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.63 E-value=2.4e-14 Score=143.76 Aligned_cols=240 Identities=10% Similarity=-0.066 Sum_probs=192.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCC-CHHHHHHHHHHHHccccchHHHHHHHHHHH
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIERTFEAFFLKAYILA 555 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 555 (766)
..++..+..+....+..++|+..+++++..+|++..+|+.++.++...| .+++++..+++++..+|++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn----------- 122 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS----------- 122 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-----------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-----------
Confidence 3455556666666777789999999999999999999999999999999 5999999999999999998
Q ss_pred hcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHh-C-CHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhc
Q 004243 556 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-G-KLDQAENCYINALDIK--HTRAHQGLARVYYLKN 631 (766)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g 631 (766)
..+|+..+.++... + +++++++.+.++++.+ +..+|...+.+....|
T Consensus 123 -----------------------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~ 173 (349)
T 3q7a_A 123 -----------------------------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFS 173 (349)
T ss_dssp -----------------------------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 45566666666666 6 7889999999999984 5679999999999888
Q ss_pred cHH--------HHHHHHHHHHHhccCCHHHHHHHh----hhcC-------HHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 004243 632 ELK--------AAYDEMTKLLEKAQYSASAFEKRS----EYSD-------REMAKNDLNMATQLDPLRTYPYRYRAAVLM 692 (766)
Q Consensus 632 ~~~--------~A~~~~~~~l~~~p~~~~~~~~~~----~~~~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 692 (766)
.++ ++++.++++++.+|.+..+|..++ ..+. ++++++++++++..+|++..+|.++..++.
T Consensus 174 ~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 174 TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 887 999999999999999999999998 3344 689999999999999999999999998988
Q ss_pred hCCCH--------------------HHHHHHHHHHHhcC------CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHH-ccC
Q 004243 693 DDQKE--------------------VEAVEELSKAIAFK------PDL-QMLHLRAAFYESIGDLTSAIRDSQAAL-CLD 744 (766)
Q Consensus 693 ~~g~~--------------------~~A~~~~~~al~~~------p~~-~~~~~la~~~~~~g~~~~A~~~~~~al-~~~ 744 (766)
..|+. .+-.+.....+... +.. .++..++.+|...|+.++|.+.|+... +.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~d 333 (349)
T 3q7a_A 254 HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYD 333 (349)
T ss_dssp HTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC
Confidence 87764 22222222222222 223 455588999999999999999999987 779
Q ss_pred CCChhHHHHHHH
Q 004243 745 PNHMETLDLYNR 756 (766)
Q Consensus 745 p~~~~~~~~l~~ 756 (766)
|-....|....+
T Consensus 334 pir~~yw~~~~~ 345 (349)
T 3q7a_A 334 QMRAGYWEFRRR 345 (349)
T ss_dssp GGGHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 987777776554
No 120
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=2.9e-12 Score=142.15 Aligned_cols=452 Identities=9% Similarity=-0.028 Sum_probs=280.1
Q ss_pred hhHHHHHHHHhhcchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCccccHh--HHHHHH---HH---hccHHHH
Q 004243 236 NTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAK---YK---VGQQYSA 307 (766)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~l~~~~---~~---~~~a~~~ 307 (766)
++.+..+++.+...+. ....+..+.......++++.|...|++++...|..... ..+... .. ...+...
T Consensus 49 ~d~i~~lE~~l~~np~---d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPT---DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 3444555555544443 34566667777778899999999999999998876543 111111 12 3346667
Q ss_pred HHHHhhhcc-CCCchhHHHHHHHHhccC------cH----HHHHHHHHHhc----CCCCchHHHHHHHHHH---------
Q 004243 308 YKLINSIIS-EHKPTGWMYQERSLYNLG------RE----KIVDLNYASEL----DPTLSFPYKYRAVAKM--------- 363 (766)
Q Consensus 308 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~----A~~~~~~al~~----~p~~~~~~~~~a~~~~--------- 363 (766)
|++++...+ ...+..|..........+ .. ....|++|+.. +|.....|........
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 777776663 123445655443322211 11 34677777753 5656666655554432
Q ss_pred HcCCHHHHHHHHHHHHccCC-CHHHHHH-HHHH-------------HHhhhhHHHHHHHHHHHHhccCCcccccccchh-
Q 004243 364 EEGQIRAAISEIDRIIVFKL-SVDCLEL-RAWL-------------FIAADDYESALRDTLALLALESNYMMFHGRVSG- 427 (766)
Q Consensus 364 ~~g~~~~A~~~~~~al~~~~-~~~~~~~-~a~~-------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a- 427 (766)
.+++.+.+...|++++.+.. ....++. .... -....+|+.|...+...-.....-.........
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34456778888888886421 1121111 0000 001122333333332222221110000000000
Q ss_pred --hhHH---h-HHHHHHhhhchHhhHHHhhhhhcccCc--------c-ccHHHHHHHHHcCCCChhHHHHHHHHHHhcCC
Q 004243 428 --DHLV---K-LLNHHVRSWSPADCWIKLYDRWSSVDD--------I-GSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 492 (766)
Q Consensus 428 --~~~l---~-~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~-~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~ 492 (766)
.... + .-......|.. |-.|...+. . .....|++++...|..+..|+..+..+...|+
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~-------yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLE-------WIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHH-------HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC
T ss_pred chhccCCCCchhHHHHHHHHHH-------HHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 0000 0 00000111111 111111111 0 11457899999999999999999999999999
Q ss_pred HHHHH-HHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHH
Q 004243 493 QKAAM-RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQL 570 (766)
Q Consensus 493 ~~~A~-~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 570 (766)
.++|. ..|++++...|.+...|..++.+....|++++|...|++++..-|.. .... ... |... ..+..
T Consensus 359 ~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~------~~~---p~~~-~~~~~ 428 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM------EDD---PTNE-SAINQ 428 (679)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH------HHS---TTCH-HHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh------hcc---Ccch-hhhhh
Confidence 99997 99999999999998889999999999999999999999998743211 0000 000 0000 00000
Q ss_pred HHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc-C--ChHHHHHHHHHHHHhcc-HHHHHHHHHHHHHh
Q 004243 571 LEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-K--HTRAHQGLARVYYLKNE-LKAAYDEMTKLLEK 646 (766)
Q Consensus 571 ~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~ 646 (766)
... ....+|...+......|..+.|...|.+|++. . ....|...|.+....++ .+.|...|+.+++.
T Consensus 429 ~~~---------~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 429 LKS---------KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp HHH---------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hcc---------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 000 01346888888888899999999999999986 3 35677777777777655 89999999999999
Q ss_pred ccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHH
Q 004243 647 AQYSASAFEKRS----EYSDREMAKNDLNMATQLDPL---RTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM 716 (766)
Q Consensus 647 ~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 716 (766)
.|+++..|...+ ..|+.+.|...|++++...|+ ...+|......-...|+.+.+.+..+++.+..|+++.
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 999999886666 468999999999999998873 5677888888888899999999999999999998743
No 121
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.62 E-value=2.8e-15 Score=133.36 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=92.4
Q ss_pred eEEEE-cCeEEEeehHHHhcCCHHHHHHhcC-CCc-cCCCCeEEecCCCCCHHHHHHHHHHhhcCC--------------
Q 004243 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG-GFV-ESKRKTIDFSHDGVSVEGLRAVEVYTRTSR-------------- 119 (766)
Q Consensus 57 v~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~-~~~-e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~-------------- 119 (766)
|+++. +|+.|++||.+ |.+|+||++||.+ ++. |+..+.|+| ++|+..++..|++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl--~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPL--PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEEC--TTSCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCC--CCccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 77775 89999999999 8999999999998 888 777889999 9999999999999999988
Q ss_pred ------------CCCCCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcC--ChhhHHHHHHHHHhhC
Q 004243 120 ------------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDYGLEER 172 (766)
Q Consensus 120 ------------~~~~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~--~~~n~~~~~~~a~~~~ 172 (766)
+. ++.+++++|+.+|++|++.+|...|++++...|. +++.+-.++.+...+.
T Consensus 80 ~~~~i~~wD~~F~~-id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t 145 (159)
T 2ast_A 80 RTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFT 145 (159)
T ss_dssp -CCCCCHHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSC
T ss_pred chhhhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence 66 8999999999999999999999999999998886 2455544444433333
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.61 E-value=5.7e-15 Score=136.68 Aligned_cols=157 Identities=13% Similarity=0.021 Sum_probs=139.9
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhh---
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE--- 659 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~--- 659 (766)
...+..+|..+...|++++|+..|+++++. +++.++..+|.++...|++++|+..+++++...| ++..+...+.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 356788999999999999999999999988 5778999999999999999999999999999999 7766544441
Q ss_pred --hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHcCCHHHHH
Q 004243 660 --YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL---QMLHLRAAFYESIGDLTSAI 734 (766)
Q Consensus 660 --~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~la~~~~~~g~~~~A~ 734 (766)
.+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..+..+|.++...|+.++|+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1233457999999999999999999999999999999999999999999999975 36779999999999999999
Q ss_pred HHHHHHHc
Q 004243 735 RDSQAALC 742 (766)
Q Consensus 735 ~~~~~al~ 742 (766)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 123
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.61 E-value=7e-15 Score=136.05 Aligned_cols=167 Identities=15% Similarity=0.050 Sum_probs=137.0
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccch
Q 004243 348 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 426 (766)
Q Consensus 348 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 426 (766)
+|.....++.+|..+...|++++|+..|+++++.+|+ +..++.+|.++...|++++|+..+++++..+| ++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~------ 74 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS------ 74 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH------
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH------
Confidence 4556677889999999999999999999999999994 45566699999999999999999999999999 663
Q ss_pred hhhHHhHHHHH-HhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004243 427 GDHLVKLLNHH-VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 505 (766)
Q Consensus 427 a~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 505 (766)
.....+.+... .+.... ++..++++++.+|+++.+++.+|.++...|++++|+..|+++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~------------------a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESP------------------ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp HHHHHHHHHHHHHHTSCH------------------HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccch------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22233322211 111111 25678999999999999999999999999999999999999999
Q ss_pred cCCCc--hhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 506 HSSSE--HERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 506 ~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
.+|+. +.++..+|.++...|+.++|+..|++++.
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99976 56999999999999999999999999875
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.61 E-value=4.1e-15 Score=128.56 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=85.8
Q ss_pred HHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHH
Q 004243 468 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 547 (766)
Q Consensus 468 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 547 (766)
++..++|+.+..+..+|..+++.|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--- 80 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--- 80 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---
Confidence 44556788888888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHH
Q 004243 548 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLAR 625 (766)
Q Consensus 548 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~ 625 (766)
..+|+++|.++..+|++++|+..|+++++++ ++.++.+++.
T Consensus 81 -------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 81 -------------------------------------IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 4455666666666666666666666666653 3344444444
Q ss_pred H
Q 004243 626 V 626 (766)
Q Consensus 626 ~ 626 (766)
+
T Consensus 124 ~ 124 (126)
T 4gco_A 124 C 124 (126)
T ss_dssp H
T ss_pred h
Confidence 3
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.60 E-value=1.7e-15 Score=134.79 Aligned_cols=109 Identities=8% Similarity=-0.086 Sum_probs=81.1
Q ss_pred HHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-
Q 004243 640 MTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL- 714 (766)
Q Consensus 640 ~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 714 (766)
++++++++|++..+++.+| ..|++++|+..|++++.++|+++.+|.++|.++...|++++|+..|+++++++|++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 3334444444444444444 33445555555555666677778888888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCh
Q 004243 715 QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 748 (766)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 748 (766)
..++++|.+|..+|++++|+..|++++++.|+.+
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 5666889999999999999999999999998865
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.59 E-value=5.6e-15 Score=131.53 Aligned_cols=115 Identities=6% Similarity=-0.056 Sum_probs=105.0
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchH
Q 004243 466 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (766)
Q Consensus 466 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 545 (766)
+.++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~- 103 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND- 103 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-
Confidence 4677888999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHH
Q 004243 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAH 620 (766)
Q Consensus 546 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 620 (766)
+.+|+++|.+|...|++++|+..|++++++.+...+
T Consensus 104 ---------------------------------------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~ 139 (151)
T 3gyz_A 104 ---------------------------------------YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139 (151)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred ---------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH
Confidence 677889999999999999999999999998655443
No 127
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.58 E-value=4.4e-14 Score=141.95 Aligned_cols=170 Identities=14% Similarity=0.054 Sum_probs=149.4
Q ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCccccccc
Q 004243 346 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 424 (766)
Q Consensus 346 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 424 (766)
...|++...++.+|..+...|++++|+..|+++++.+| ++..++.+|.++...|++++|+..+++++..+|+...
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~---- 186 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY---- 186 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH----
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH----
Confidence 33488899999999999999999999999999999999 4555666999999999999999999999999996552
Q ss_pred chhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004243 425 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 504 (766)
Q Consensus 425 ~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 504 (766)
.....+......+..+.| +..+++++..+|+++.+++.+|.++...|++++|+..|++++
T Consensus 187 --~~~~~~~~l~~~~~~~~a------------------~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 187 --QGLVAQIELLXQAADTPE------------------IQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp --HHHHHHHHHHHHHTSCHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhhcccCcc------------------HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344445545555666655 556799999999999999999999999999999999999999
Q ss_pred hcCCCc--hhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 505 NHSSSE--HERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 505 ~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
+.+|++ ..++..+|.++...|+.++|+..|++++.
T Consensus 247 ~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 247 RXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999998 88999999999999999999999999885
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.58 E-value=2.2e-14 Score=139.11 Aligned_cols=225 Identities=11% Similarity=-0.008 Sum_probs=175.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHH-------HHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHH
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE-------GWILYDTGHREEALSRAEKSISIERTF-EAFFLKA 551 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~ 551 (766)
++..|..+ ..+++..|.+.|.+++..+|+.+++|..+ +.++...++..+++..+.+.+.+.|.. .+++.+.
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 34445555 57999999999999999999999999999 899999999999999999999999887 2221100
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChH-HHHHHHHHHHHh
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTR-AHQGLARVYYLK 630 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~la~~~~~~ 630 (766)
-.+.+.. -.+..+..+...++.++...|++++|.+.|+..+..++.. +.+.+|.++...
T Consensus 89 g~y~~~~--------------------~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~ 148 (282)
T 4f3v_A 89 GLYGDIT--------------------YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAA 148 (282)
T ss_dssp TTTCCCE--------------------EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHT
T ss_pred Ccccccc--------------------cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 0000000 0001124667778899999999999999999888775422 889999999999
Q ss_pred ccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004243 631 NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPL-RTYPYRYRAAVLMDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 631 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 709 (766)
+++++|+..|+++.... +|. ...+++++|.++...|++++|+.+|++++.
T Consensus 149 ~r~~dA~~~l~~a~~~~-----------------------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKWP-----------------------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp TCHHHHHHHHTTGGGCS-----------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhhccC-----------------------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 99999998887554321 111 135788999999999999999999999986
Q ss_pred cC--CC-h-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHH
Q 004243 710 FK--PD-L-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYN 755 (766)
Q Consensus 710 ~~--p~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 755 (766)
-. |. . ..++.+|.++.++|+.++|...|++++..+|+ +.+...|.
T Consensus 200 g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 200 SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 54 65 3 56779999999999999999999999999999 88877764
No 129
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.57 E-value=6.5e-14 Score=133.73 Aligned_cols=180 Identities=14% Similarity=0.014 Sum_probs=155.5
Q ss_pred HHhchhhccc--cchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhc----cHHHHHHHHHHHHHhc
Q 004243 574 ALRCPSDGLR--KGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKN----ELKAAYDEMTKLLEKA 647 (766)
Q Consensus 574 A~~~~~~~l~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~ 647 (766)
|+..|+++.+ .+.+++.+|.+|...+++++|+.+|+++.+.+++.+++++|.+|.. + ++++|+..|+++.+
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-- 81 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-- 81 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--
Confidence 3444444443 3689999999999999999999999999999999999999999998 7 89999999999964
Q ss_pred cCCHHHHHHHhh--------hcCHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCC
Q 004243 648 QYSASAFEKRSE--------YSDREMAKNDLNMATQLDP--LRTYPYRYRAAVLMD----DQKEVEAVEELSKAIAFKPD 713 (766)
Q Consensus 648 p~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 713 (766)
+.++.++..+|. .+++++|+.+|+++.+..| .++.+++++|.+|.. .+++++|+.+|+++++..++
T Consensus 82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 161 (212)
T 3rjv_A 82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRT 161 (212)
T ss_dssp TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCT
T ss_pred CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 578888888881 5689999999999999988 459999999999999 89999999999999998445
Q ss_pred hHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q 004243 714 LQMLHLRAAFYESI-G-----DLTSAIRDSQAALCLDPNHMETLDLYNRAR 758 (766)
Q Consensus 714 ~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 758 (766)
....+++|.+|... | ++++|+.+|+++.+. .++++...+.++.
T Consensus 162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l~ 210 (212)
T 3rjv_A 162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE--GFDTGCEEFDRIS 210 (212)
T ss_dssp THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHhh
Confidence 57788999999864 3 899999999999987 4677777777665
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.56 E-value=8.5e-15 Score=130.73 Aligned_cols=124 Identities=15% Similarity=0.009 Sum_probs=94.7
Q ss_pred HHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-
Q 004243 640 MTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL- 714 (766)
Q Consensus 640 ~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 714 (766)
|++++..+|++...+..+| ..|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 3344444444444444444 23444555555555666677778888899999999999999999999999999988
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhh
Q 004243 715 QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
..++.+|.++..+|++++|+..|+++++++|++++......+++..++.
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 138 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence 5566899999999999999999999999999998887777777766553
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.56 E-value=2.2e-13 Score=136.69 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhh-h-hHHHHHHHHHHHH
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEG-QIRAAISEIDRIIVFKL-SVDCLELRAWLFIAA-D-DYESALRDTLALL 412 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~-g-~~~~A~~~~~~al 412 (766)
|+..+++++.++|++..+|..|+.++...| .+++++..+++++..+| +...+..+++++... + ++++++..+.+++
T Consensus 73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 888888888888888888888888888888 48888888888888888 555566688888777 6 7778888888888
Q ss_pred hccCCcccccccchhhhHHhHHHHHHhhhc
Q 004243 413 ALESNYMMFHGRVSGDHLVKLLNHHVRSWS 442 (766)
Q Consensus 413 ~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~ 442 (766)
+.+|.+.. ++...+.+....+.++
T Consensus 153 ~~dpkNy~------AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 153 LPDPKNYH------TWAYLHWLYSHFSTLG 176 (349)
T ss_dssp SSCTTCHH------HHHHHHHHHHHHHHTT
T ss_pred HhCCCCHH------HHHHHHHHHHHhcccc
Confidence 87777773 6666666666555443
No 132
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.56 E-value=2.4e-14 Score=145.73 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=107.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHH
Q 004243 517 EGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYV 596 (766)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~ 596 (766)
.|.++...|++++|+..|.+++++.+.. + ....+ ..++.++|.+|.
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~-------------~-----------~~~~~----------a~~~~~lg~~~~ 87 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANN-------------R-----------SLFHA----------AKAFEQAGMMLK 87 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------T-----------CHHHH----------HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc-------------C-----------CHHHH----------HHHHHHHHHHHH
Confidence 3667778888888888888888765432 0 00000 356889999999
Q ss_pred HhCCHHHHHHHHHHHHcc----CC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCC------HHHHHHHh----
Q 004243 597 ECGKLDQAENCYINALDI----KH----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS------ASAFEKRS---- 658 (766)
Q Consensus 597 ~~g~~~~A~~~~~~al~~----~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~~~---- 658 (766)
..|++++|+.+|++++++ +. ..++.++|.+|.. |++++|+..|++++++.|.. ..++..+|
T Consensus 88 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV 166 (307)
T ss_dssp HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 999999999999999987 11 3578899999988 99999999999999887643 23344444
Q ss_pred hhcCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 004243 659 EYSDREMAKNDLNMATQLDPLR------TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD 713 (766)
Q Consensus 659 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 713 (766)
..|++++|+..|++++.+.|.+ ..++..+|.++...|++++|+.+|++++ ++|+
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 3455555555555555554332 1244555555555555555555555555 5554
No 133
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.54 E-value=1.5e-13 Score=138.05 Aligned_cols=168 Identities=13% Similarity=-0.005 Sum_probs=106.1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHH
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 552 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 552 (766)
.|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-------- 184 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-------- 184 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH--------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch--------
Confidence 366666666666666666666666666666666666666666666666666666666666666666655543
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhcc
Q 004243 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNE 632 (766)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~ 632 (766)
...+...+..+...++
T Consensus 185 ----------------------------------------------------------------~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 185 ----------------------------------------------------------------RYQGLVAQIELLXQAA 200 (287)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHT
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHHhhcc
Confidence 1122223333333444
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 004243 633 LKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP 712 (766)
Q Consensus 633 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 712 (766)
.++|+ ..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|
T Consensus 201 ~~~a~------------------------------~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 201 DTPEI------------------------------QQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp SCHHH------------------------------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cCccH------------------------------HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 33333 344444555666666777777777778888888888888887777
Q ss_pred Ch--H-HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 713 DL--Q-MLHLRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 713 ~~--~-~~~~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
++ . .+..++.++...|+.++|+..|++++.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 76 3 344777777777888888887777764
No 134
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.53 E-value=6.8e-13 Score=126.62 Aligned_cols=185 Identities=16% Similarity=0.052 Sum_probs=140.0
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhh----hHHHHHHHHHHHH
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAAD----DYESALRDTLALL 412 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g----~~~~A~~~~~~al 412 (766)
|+..|+++.+. .++.+++.+|.+|...+++++|+..|+++.+.. ++...+.+|.+|.. + ++++|+..|+++.
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 66777777765 677888888888888888888888888887643 45666667777776 5 6777777777664
Q ss_pred hccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHh---
Q 004243 413 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR--- 489 (766)
Q Consensus 413 ~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~--- 489 (766)
+ +.++.+++.+|.+|..
T Consensus 81 ~------------------------------------------------------------~g~~~a~~~Lg~~y~~g~g 100 (212)
T 3rjv_A 81 E------------------------------------------------------------AGSKSGEIVLARVLVNRQA 100 (212)
T ss_dssp H------------------------------------------------------------TTCHHHHHHHHHHHTCGGG
T ss_pred H------------------------------------------------------------CCCHHHHHHHHHHHHcCCC
Confidence 2 2344556677777776
Q ss_pred -cCCHHHHHHHHHHHHhcCC--CchhhHHHHHHHHHH----CCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCC
Q 004243 490 -LNCQKAAMRCLRLARNHSS--SEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE 562 (766)
Q Consensus 490 -~g~~~~A~~~~~~a~~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~ 562 (766)
.+++++|+..|+++.+..| .++.+++.+|.+|.. .+++++|+.+|+++++. |.+
T Consensus 101 ~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~------------------ 161 (212)
T 3rjv_A 101 GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT------------------ 161 (212)
T ss_dssp SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT------------------
T ss_pred CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC------------------
Confidence 7889999999999998877 358899999999988 88899999999999876 333
Q ss_pred ChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHh-C-----CHHHHHHHHHHHHccCChHHHHHHHHH
Q 004243 563 SSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-G-----KLDQAENCYINALDIKHTRAHQGLARV 626 (766)
Q Consensus 563 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~-g-----~~~~A~~~~~~al~~~~~~~~~~la~~ 626 (766)
+.+++++|.+|... | ++++|+.+|+++.+.+++.+...++.+
T Consensus 162 ----------------------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 162 ----------------------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp ----------------------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34567777777653 3 889999999999888887777766654
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.53 E-value=4.2e-14 Score=141.55 Aligned_cols=193 Identities=11% Similarity=-0.027 Sum_probs=131.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHH
Q 004243 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 553 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 553 (766)
|..+..+..+|..+...|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--------- 71 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------
Confidence 55677788888888888888888888888888888888888888888888888888888888888877775
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccH
Q 004243 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNEL 633 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~ 633 (766)
..+++.+|.++...|++++|+..|++++++
T Consensus 72 -------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------------------- 101 (281)
T 2c2l_A 72 -------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSL------------------- 101 (281)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred -------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------
Confidence 445666666666666666666666666655
Q ss_pred HHHHHHHHHHHHhccCCHH-----HHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004243 634 KAAYDEMTKLLEKAQYSAS-----AFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 634 ~~A~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 708 (766)
+|++.. ++... ...++...........|.++.+...++.++ .|++++|++.+++++
T Consensus 102 -------------~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al 162 (281)
T 2c2l_A 102 -------------AKEQRLNFGDDIPSAL----RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNH 162 (281)
T ss_dssp -------------HHHTTCCCCSHHHHHH----HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGG
T ss_pred -------------CccchhhHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhh
Confidence 322210 00000 011112222223345666777777777655 688899999999999
Q ss_pred hcCCChHHHH-HHHHHHHHc-CCHHHHHHHHHHHHccC
Q 004243 709 AFKPDLQMLH-LRAAFYESI-GDLTSAIRDSQAALCLD 744 (766)
Q Consensus 709 ~~~p~~~~~~-~la~~~~~~-g~~~~A~~~~~~al~~~ 744 (766)
+.+|++.... .++.++... +.+++|.+.|.++.+..
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 163 EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9988875444 455555554 77888999998887643
No 136
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.53 E-value=2.3e-13 Score=138.42 Aligned_cols=202 Identities=14% Similarity=0.019 Sum_probs=133.1
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccC
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALES 416 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 416 (766)
|...++++.+..+... +...+++++|+..|.++ |.+|...|++++|+..|.+++.+.+
T Consensus 10 A~~~~~~a~k~~~~~~---------~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al~~~~ 67 (307)
T 2ifu_A 10 AHEHIAKAEKYLKTSF---------MKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAYLQEAEAHA 67 (307)
T ss_dssp HHHHHHHHHHHHCCCS---------SSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccc---------cCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 7777777776655421 11147788888887776 5677888888888888888888766
Q ss_pred CcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCC------ChhHHHHHHHHHHhc
Q 004243 417 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG------KSFLRFRQSLLLLRL 490 (766)
Q Consensus 417 ~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~------~~~~~~~la~~~~~~ 490 (766)
........+.++..+|.++...+++++|. ..+++++++.+. ...++..+|.+|..
T Consensus 68 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~------------------~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~- 128 (307)
T 2ifu_A 68 NNRSLFHAAKAFEQAGMMLKDLQRMPEAV------------------QYIEKASVMYVENGTPDTAAMALDRAGKLMEP- 128 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGGH------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred HcCCHHHHHHHHHHHHHHHHhCCCHHHHH------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence 54322222346666666776666666663 333555544221 13466777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCc------hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCCh
Q 004243 491 NCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 564 (766)
Q Consensus 491 g~~~~A~~~~~~a~~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~ 564 (766)
|++++|+..|++++++.|.. ..++..+|.++...|++++|+..|++++++.|+......
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------- 193 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT--------------- 193 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH---------------
Confidence 88888888888877765532 456777788888888888888888888776655400000
Q ss_pred HHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 565 TYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 565 ~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
...++..+|.++...|++++|+..|++++ .
T Consensus 194 -------------------~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 194 -------------------CYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp -------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred -------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 02346677777777788888888888877 6
No 137
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.53 E-value=1e-13 Score=154.47 Aligned_cols=156 Identities=13% Similarity=0.011 Sum_probs=111.6
Q ss_pred hCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHH
Q 004243 598 CGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLN 671 (766)
Q Consensus 598 ~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~ 671 (766)
.|++++|+..|+++++. ++..++..+|.++...|++++|+..|+++++.+|++..++..+| ..|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36777777778777777 34567778888888888888888888888888888877777777 4577888888888
Q ss_pred HHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHc---CCHHHHHHHHHHHHccCCCC
Q 004243 672 MATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESI---GDLTSAIRDSQAALCLDPNH 747 (766)
Q Consensus 672 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 747 (766)
++++.+|+++.++..+|.++...|++++|++.|+++++.+|++ ..+..+|.++... |++++|++.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 8888888888888888888888888888888888888888887 4455888888888 88888888888888888887
Q ss_pred hhHHHH
Q 004243 748 METLDL 753 (766)
Q Consensus 748 ~~~~~~ 753 (766)
...+..
T Consensus 162 ~~~~~~ 167 (568)
T 2vsy_A 162 VEPFAF 167 (568)
T ss_dssp SCHHHH
T ss_pred cChHHH
Confidence 555433
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.52 E-value=5.9e-14 Score=140.50 Aligned_cols=85 Identities=13% Similarity=0.162 Sum_probs=81.5
Q ss_pred cccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 460 IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 460 ~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
..++..|.++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccch
Q 004243 540 IERTF 544 (766)
Q Consensus 540 ~~p~~ 544 (766)
++|++
T Consensus 101 l~p~~ 105 (281)
T 2c2l_A 101 LAKEQ 105 (281)
T ss_dssp HHHHT
T ss_pred hCccc
Confidence 98875
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.52 E-value=2.2e-13 Score=132.07 Aligned_cols=203 Identities=10% Similarity=-0.080 Sum_probs=165.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHH-------hHHHHHHhhhchHhhHHHhhhhhcccCccccH
Q 004243 391 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV-------KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL 463 (766)
Q Consensus 391 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l 463 (766)
.|.-+ ..+++..|.+.|.+++.++|+.. ++|..+ +.+.....+...+.
T Consensus 13 ~~~~~-~~~d~~~A~~~F~~a~~~dP~~~------Daw~g~~a~g~~~~~~L~~~~r~~~a~------------------ 67 (282)
T 4f3v_A 13 SAVSM-LPMSEARSLDLFTEITNYDESAC------DAWIGRIRCGDTDRVTLFRAWYSRRNF------------------ 67 (282)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHTTCCCHHHHHHHHHTGGGT------------------
T ss_pred HHhcc-cCCCHHHHHHHHHHHHHhChhhh------HHHHhHHHccCCcHHHHHHHHHHHHHH------------------
Confidence 34444 57999999999999999999998 477777 66666666666553
Q ss_pred HHHHHHHHcCCCChh---------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHH
Q 004243 464 AVINQMLINDPGKSF---------------------LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 522 (766)
Q Consensus 464 ~~~~~al~~~p~~~~---------------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~ 522 (766)
..+.+.+++.|.... ++..++.++...|+|++|.+.|+..+...|.+. +.+.+|.++.
T Consensus 68 ~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~ 146 (282)
T 4f3v_A 68 GQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG 146 (282)
T ss_dssp THHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH
T ss_pred HHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH
Confidence 234677776665443 344588899999999999999999999999988 9999999999
Q ss_pred HCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHH
Q 004243 523 DTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLD 602 (766)
Q Consensus 523 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~ 602 (766)
+.|++++|+..|+++....+.. ....+++.+|.++..+|+++
T Consensus 147 ~~~r~~dA~~~l~~a~~~~d~~--------------------------------------~~~~a~~~LG~al~~LG~~~ 188 (282)
T 4f3v_A 147 AAERWTDVIDQVKSAGKWPDKF--------------------------------------LAGAAGVAHGVAAANLALFT 188 (282)
T ss_dssp HTTCHHHHHHHHTTGGGCSCHH--------------------------------------HHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHhhccCCcc--------------------------------------cHHHHHHHHHHHHHHCCCHH
Confidence 9999999999999777642111 00346899999999999999
Q ss_pred HHHHHHHHHHccC-----ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh
Q 004243 603 QAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (766)
Q Consensus 603 ~A~~~~~~al~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 658 (766)
+|+.+|++++... .+++++.+|.++..+|+.++|...|++++..+|+ ..++..+.
T Consensus 189 eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 9999999998664 3368999999999999999999999999999999 77766554
No 140
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.52 E-value=3.3e-13 Score=150.27 Aligned_cols=156 Identities=12% Similarity=0.058 Sum_probs=134.9
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcccc
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 542 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 542 (766)
+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|++.|+++++++|
T Consensus 9 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 88 (568)
T 2vsy_A 9 LLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88 (568)
T ss_dssp ------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHH
Q 004243 543 TFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH 620 (766)
Q Consensus 543 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 620 (766)
++ ..++.++|.++...|++++|+..|+++++.+ ++.++
T Consensus 89 ~~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 128 (568)
T 2vsy_A 89 EH----------------------------------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128 (568)
T ss_dssp TC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CC----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 87 5678899999999999999999999999984 56799
Q ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHHhccCCHHHHHHHh
Q 004243 621 QGLARVYYLK---NELKAAYDEMTKLLEKAQYSASAFEKRS 658 (766)
Q Consensus 621 ~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 658 (766)
.++|.++... |++++|.+.++++++.+|++...+..++
T Consensus 129 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999 9999999999999999999888777666
No 141
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.50 E-value=1.3e-14 Score=126.82 Aligned_cols=130 Identities=14% Similarity=0.065 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 004243 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 696 (766)
Q Consensus 617 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 696 (766)
...+.+.|..++..|++++|+..|+++++.+|+++.. .++...|.++.+|.++|.++..+|+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------------------~a~~~~~~~a~a~~n~g~al~~Lgr 72 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------------------EAFDHAGFDAFCHAGLAEALAGLRS 72 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------------------SCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------------------hhhhhccchHHHHHHHHHHHHHCCC
Confidence 3567888999999999999999999999998875432 0112223345599999999999999
Q ss_pred HHHHHHHHHHHHhc-------CCCh-HHH----HHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhhh
Q 004243 697 EVEAVEELSKAIAF-------KPDL-QML----HLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQ 764 (766)
Q Consensus 697 ~~~A~~~~~~al~~-------~p~~-~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 764 (766)
+++|+..|++++++ +|++ ..| +++|.++..+|++++|+..|+++++++|++..+...+.++++..+..
T Consensus 73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~ 152 (159)
T 2hr2_A 73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR 152 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999 677 89999999999999999999999999999988888888777766543
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.50 E-value=5.5e-14 Score=124.72 Aligned_cols=103 Identities=16% Similarity=0.024 Sum_probs=85.6
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQA 739 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~ 739 (766)
|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|++ ..++.+|.++...|++++|+..|++
T Consensus 32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444455555555556677778888899999999999999999999999999998 5566899999999999999999999
Q ss_pred HHccCCCChhHHHHHHHHHHhhhh
Q 004243 740 ALCLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 740 al~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
+++++|++++......++...++.
T Consensus 112 al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 112 ARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCCcchHHHHHHHHHHHHH
Confidence 999999999888877777766553
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.47 E-value=2.7e-14 Score=146.87 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=147.2
Q ss_pred HHHHHHHHhchhh----ccc--cchhHHhhHHHHH------------HhCCHHHHHHHHHHHHcc--CChHHHHHHHHHH
Q 004243 568 IQLLEEALRCPSD----GLR--KGQALNNLGSIYV------------ECGKLDQAENCYINALDI--KHTRAHQGLARVY 627 (766)
Q Consensus 568 ~~~~~~A~~~~~~----~l~--~~~~~~~lg~~~~------------~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~ 627 (766)
++.+++|+..+.. .+. |..+|..+|.... .++++++|+..|++++.. ....++..+|.++
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~ 157 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVY 157 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence 4588999998888 433 5556666665543 456777888888777765 3567899999999
Q ss_pred HHhccHHHHHHHHHHHHHhccCC---------------HHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 004243 628 YLKNELKAAYDEMTKLLEKAQYS---------------ASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRA 688 (766)
Q Consensus 628 ~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la 688 (766)
...|++++|+..|+++++..|++ ..++..+| ..|++++|+..|+++++++|+++.+++.+|
T Consensus 158 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 237 (336)
T 1p5q_A 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG 237 (336)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999999999999999999998 57888888 568999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHH-HHHHHHHHcc
Q 004243 689 AVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSA-IRDSQAALCL 743 (766)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 743 (766)
.++...|++++|+..|+++++++|++ ..+..++.++..+|++++| ...|++++..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 238 EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 4555889999999999988 5577777654
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.47 E-value=3.2e-13 Score=120.38 Aligned_cols=109 Identities=9% Similarity=-0.014 Sum_probs=98.6
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchH
Q 004243 466 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (766)
Q Consensus 466 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 545 (766)
+++++..+|+++.+++.+|..+...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|+++++++|++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~- 88 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE- 88 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-
Confidence 6788899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 546 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
+.+++++|.++...|++++|+..|++++++
T Consensus 89 ---------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 89 ---------------------------------------PRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp ---------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566788888888888888888888888877
No 145
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.46 E-value=2.3e-12 Score=112.70 Aligned_cols=128 Identities=26% Similarity=0.266 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 004243 620 HQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ 695 (766)
Q Consensus 620 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 695 (766)
++.+|.++...|++++|+..++++++..|++...+..++ ..|++++|+..+++++...|.++.++..+|.++...|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 444444444444444444444444444444444444443 2344555555555555566667777888899999999
Q ss_pred CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004243 696 KEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNH 747 (766)
Q Consensus 696 ~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 747 (766)
++++|+..+++++...|++ ..+..+|.++...|++++|...++++++.+|++
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999998877 455688999999999999999999999988863
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=8.3e-14 Score=152.66 Aligned_cols=184 Identities=11% Similarity=0.142 Sum_probs=165.9
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhh--hHH
Q 004243 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ----------IRAAISEIDRIIVFKL-SVDCLELRAWLFIAAD--DYE 402 (766)
Q Consensus 336 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g--~~~ 402 (766)
+|+..+++++..+|++..+|..|+.++...|+ +++|+..++++++.+| +...|+.+++++...| +++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~ 126 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 126 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHH
Confidence 49999999999999999999999999999998 9999999999999999 6667777999999999 779
Q ss_pred HHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHh-hhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHH
Q 004243 403 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR-SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRF 481 (766)
Q Consensus 403 ~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~ 481 (766)
+|+..+.++++.+|.+. .+|...+.+....+ .++++ +..+.++++.+|.+..+|.
T Consensus 127 ~el~~~~k~l~~d~~N~------~aW~~R~~~l~~l~~~~~~e------------------l~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 127 RELELCARFLEADERNF------HCWDYRRFVAAQAAVAPAEE------------------LAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp HHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTCCCHHHH------------------HHHHHTTTTTTCCCHHHHH
T ss_pred HHHHHHHHHHhhccccc------cHHHHHHHHHHHcCCChHHH------------------HHHHHHHHHHCCCCccHHH
Confidence 99999999999999998 48888998888887 66655 5566899999999999999
Q ss_pred HHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHH------------HHHHHH
Q 004243 482 RQSLLLLRL--------------NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE------------ALSRAE 535 (766)
Q Consensus 482 ~la~~~~~~--------------g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~------------A~~~~~ 535 (766)
.++.++... +.+++|++.+.+++..+|++..+|++++.++...+++++ |+..|.
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~ 262 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFS 262 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEec
Confidence 999998885 568999999999999999999999999999999998776 666677
Q ss_pred HHHccccc
Q 004243 536 KSISIERT 543 (766)
Q Consensus 536 ~al~~~p~ 543 (766)
+++.++|.
T Consensus 263 ~~i~~~~~ 270 (567)
T 1dce_A 263 RPLTVGSR 270 (567)
T ss_dssp EEECTTBT
T ss_pred cceecccc
Confidence 88877765
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.45 E-value=4e-14 Score=145.63 Aligned_cols=142 Identities=11% Similarity=0.048 Sum_probs=128.2
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---------------hhhHHHHHHHHHHCCCHHH
Q 004243 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---------------HERLVYEGWILYDTGHREE 529 (766)
Q Consensus 465 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~lg~~~~~~g~~~~ 529 (766)
.+.+++...|..+.++..+|.++...|++++|+..|++++..+|.+ ..++.++|.++...|++++
T Consensus 135 ~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3456667778889999999999999999999999999999999998 5899999999999999999
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHH
Q 004243 530 ALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYI 609 (766)
Q Consensus 530 A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~ 609 (766)
|+..|+++++++|++ ..+++++|.+|...|++++|+..|+
T Consensus 215 A~~~~~~al~~~p~~----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~ 254 (336)
T 1p5q_A 215 AIESCNKALELDSNN----------------------------------------EKGLSRRGEAHLAVNDFELARADFQ 254 (336)
T ss_dssp HHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987 6678899999999999999999999
Q ss_pred HHHccC--ChHHHHHHHHHHHHhccHHHH-HHHHHHHHHh
Q 004243 610 NALDIK--HTRAHQGLARVYYLKNELKAA-YDEMTKLLEK 646 (766)
Q Consensus 610 ~al~~~--~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~ 646 (766)
++++++ ++.++..++.++...|++++| ...|.+++..
T Consensus 255 ~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999984 567999999999999999988 5567777654
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.45 E-value=4.7e-13 Score=118.68 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=95.2
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 465 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.+.+++..+|++...++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 35677788888899999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 545 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 545 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
+.+++.+|.++...|++++|+..|++++++
T Consensus 86 ----------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 86 ----------------------------------------PRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp ----------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566778888888888888888888888877
No 149
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.43 E-value=3.5e-12 Score=111.45 Aligned_cols=132 Identities=21% Similarity=0.283 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Q 004243 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 557 (766)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 557 (766)
.+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------------- 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-------------
Confidence 4678899999999999999999999999999999999999999999999999999999999988775
Q ss_pred CCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHH
Q 004243 558 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKA 635 (766)
Q Consensus 558 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~ 635 (766)
...+..+|.++...|++++|+..+++++... .+.++..+|.++...|++++
T Consensus 69 ---------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 69 ---------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp ---------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred ---------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHH
Confidence 4567788999999999999999999999874 56789999999999999999
Q ss_pred HHHHHHHHHHhccC
Q 004243 636 AYDEMTKLLEKAQY 649 (766)
Q Consensus 636 A~~~~~~~l~~~p~ 649 (766)
|...+++++...|+
T Consensus 122 A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 122 AIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCCC
Confidence 99999999988875
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=8.5e-13 Score=114.28 Aligned_cols=114 Identities=24% Similarity=0.272 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
..+..+|..+...|++++|+..|++++ +.+|+++.++.++|.++...|++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al------------------------------~~~p~~~~~~~~~a~~~~~~~~~ 54 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMI------------------------------KRAPEDARGYSNRAAALAKLMSF 54 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------------HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH------------------------------HhCCCChHHHHHHHHHHHHhcCH
Confidence 455666666666666666555555554 45666677888999999999999
Q ss_pred HHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCChhHHHHHHHHHHhh
Q 004243 698 VEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLD------PNHMETLDLYNRARDQA 761 (766)
Q Consensus 698 ~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~ 761 (766)
++|+..|+++++++|++ ..++.+|.++...|++++|+..|+++++++ |+++.++..+.++...+
T Consensus 55 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 55 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999998 556689999999999999999999999999 99999999998887654
No 151
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.43 E-value=3.2e-12 Score=122.22 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=94.4
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhc
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYS 661 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~ 661 (766)
..++.+|..+...|++++|+..|++++.. .+.++.++|.++...|++++|+..|+++++.+|++..++..+| ..|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34788999999999999999999999743 5679999999999999999999999888888777766666665 346
Q ss_pred CHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 662 DREMAKNDLNMATQLDPLRT----------------YPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 662 ~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
++++|+..|+++++..|.+. .++.++|.++...|++++|+..|+++++++|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 66666666666666555544 556666666666666666666666666665554
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.42 E-value=1.1e-12 Score=121.42 Aligned_cols=135 Identities=14% Similarity=0.117 Sum_probs=96.9
Q ss_pred HHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHH
Q 004243 596 VECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMA 673 (766)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~a 673 (766)
...|++++|+..++++++.+ .+.++..+|.++...|++++|+..|+++++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---------------------------- 72 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ---------------------------- 72 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------
Confidence 44556666666666666552 345666666666666666555555555554
Q ss_pred HhcCCCCchhHHHHHHH-HHhCCCH--HHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChh
Q 004243 674 TQLDPLRTYPYRYRAAV-LMDDQKE--VEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHME 749 (766)
Q Consensus 674 l~~~p~~~~~~~~la~~-~~~~g~~--~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 749 (766)
.+|+++.++..+|.+ +...|++ ++|+..++++++.+|++ ..++.+|.++...|++++|+..|+++++++|+++.
T Consensus 73 --~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 73 --LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp --HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred --cCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 455566677788888 7788998 99999999999999988 55668999999999999999999999999999887
Q ss_pred HHHHHHHHHHh
Q 004243 750 TLDLYNRARDQ 760 (766)
Q Consensus 750 ~~~~l~~~~~~ 760 (766)
....+..+...
T Consensus 151 ~~~~~~~i~~~ 161 (177)
T 2e2e_A 151 RTQLVESINMA 161 (177)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666655543
No 153
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.41 E-value=6.7e-13 Score=106.70 Aligned_cols=81 Identities=32% Similarity=0.445 Sum_probs=65.7
Q ss_pred eEEEE-cCeEEEeehHHHhcCCHHHHHHhcC--CCccCCCCeEEecCCCCCHHHHHHHHHHhh-----c---CCCCC--C
Q 004243 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTR-----T---SRVDL--F 123 (766)
Q Consensus 57 v~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~y-----t---~~~~~--~ 123 (766)
|+++. +|++|++||.+ |.+|+||++||.+ ++.|+..+.|+| ++|++.+++.+++|+| + +.+.. +
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l--~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEEC--TTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceEC--CCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 56665 89999999999 9999999999987 788888899999 9999999999999999 5 55543 7
Q ss_pred CHHHHHHHHHHhhhhCh
Q 004243 124 CPGIVLELLSFANRFCC 140 (766)
Q Consensus 124 ~~~~~~~~l~~a~~~~~ 140 (766)
+.+++++|+.+|++|++
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 88999999999999874
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.41 E-value=1.5e-12 Score=112.63 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=92.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 554 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l 554 (766)
.+.++..+|..+...|+|++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++ ..+..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---- 82 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI---- 82 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH----
Confidence 356788999999999999999999999999999999999999999999999999999999999999876 222221
Q ss_pred HhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC
Q 004243 555 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 615 (766)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (766)
+.++.++|.++...|++++|+..|++++...
T Consensus 83 ------------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 83 ------------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp ------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2457788888888888888888888888763
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.40 E-value=1.2e-11 Score=124.68 Aligned_cols=177 Identities=12% Similarity=0.042 Sum_probs=138.2
Q ss_pred CCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchh
Q 004243 508 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQA 587 (766)
Q Consensus 508 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 587 (766)
|.....+...+..+...|++++|++.++++++..|........ ...
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~----------------------------------~~~ 117 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF----------------------------------LQW 117 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHH----------------------------------HHH
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHH----------------------------------HHH
Confidence 3445566778888999999999999999999876654100000 233
Q ss_pred HHhhHHHHHHhCCHHHHHHHHHHHHccC----C----hHHHHHHHHHHHHhccHHHHHHHHHHHHHh---ccCCHHHHHH
Q 004243 588 LNNLGSIYVECGKLDQAENCYINALDIK----H----TRAHQGLARVYYLKNELKAAYDEMTKLLEK---AQYSASAFEK 656 (766)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~----~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~ 656 (766)
++.+|.++...|++++|+..|++++... + ..++.++|.+|...|++++|+..|+++++. .|++...
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~--- 194 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF--- 194 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH---
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc---
Confidence 5668888999999999999999998761 1 358899999999999999999999999854 2222111
Q ss_pred HhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHcCC
Q 004243 657 RSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD-------LQMLHLRAAFYESIGD 729 (766)
Q Consensus 657 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~la~~~~~~g~ 729 (766)
...++.++|.+|...|++++|+.++++++++.++ ...++++|.+|..+|+
T Consensus 195 -----------------------~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 195 -----------------------DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred -----------------------hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 1257889999999999999999999999987543 2456689999999999
Q ss_pred HHHH-HHHHHHHHccC
Q 004243 730 LTSA-IRDSQAALCLD 744 (766)
Q Consensus 730 ~~~A-~~~~~~al~~~ 744 (766)
+++| ..+|++++.+.
T Consensus 252 ~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 252 EEAEIEDAYKKASFFF 267 (293)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999 88899998764
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.39 E-value=1.1e-12 Score=113.50 Aligned_cols=110 Identities=21% Similarity=0.245 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
.++.++|.+++..|++++|+..|+++++ ++|+++.+|.++|.+|..+|++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~------------------------------~~p~~~~~~~nlg~~~~~~~~~ 58 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE------------------------------LDPSNITFYNNKAAVYFEEKKF 58 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------hCCCCHHHHHhHHHHHHHhhhH
Confidence 4567777777777777666666666554 4566677788899999999999
Q ss_pred HHHHHHHHHHHhcCCChH--------HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q 004243 698 VEAVEELSKAIAFKPDLQ--------MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRAR 758 (766)
Q Consensus 698 ~~A~~~~~~al~~~p~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 758 (766)
++|+..|+++++++|++. .++.+|.++..+|++++|++.|+++++.+|+ ++....+..++
T Consensus 59 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~le 126 (127)
T 4gcn_A 59 AECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELE 126 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHhC
Confidence 999999999999877552 4557899999999999999999999999986 66666655543
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.38 E-value=6.1e-13 Score=116.30 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=97.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHH
Q 004243 388 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 467 (766)
Q Consensus 388 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 467 (766)
+...|..++..|+|++|+..|+++++++|+++. + ++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~------~---------------~a~---------------------- 50 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP------E---------------EAF---------------------- 50 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT------T---------------SCC----------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc------h---------------hhh----------------------
Confidence 455899999999999999999999999999773 1 010
Q ss_pred HHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCchhhH----HHHHHHHHHCCCHHHHHHHHHH
Q 004243 468 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-------SSSEHERL----VYEGWILYDTGHREEALSRAEK 536 (766)
Q Consensus 468 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~ 536 (766)
...|.+..+|.++|.++..+|++++|+..+++++++ +|+++.+| +++|.++..+|++++|+..|++
T Consensus 51 ---~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 51 ---DHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---hhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 001234558999999999999999999999999999 99999999 9999999999999999999999
Q ss_pred HHccccch
Q 004243 537 SISIERTF 544 (766)
Q Consensus 537 al~~~p~~ 544 (766)
+++++|++
T Consensus 128 Alel~p~d 135 (159)
T 2hr2_A 128 VVEMIEER 135 (159)
T ss_dssp HHHHHHHC
T ss_pred HHhcCCCc
Confidence 99999987
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.37 E-value=4.8e-12 Score=115.04 Aligned_cols=127 Identities=16% Similarity=0.094 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--------ccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEK--------AQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAA 689 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 689 (766)
..+...|..++..|++++|+..|.+++.. .|.+... ...+|.++.++.++|.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~nla~ 71 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELDRKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777765 2322211 1235667889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCh-hHHHHHHHHHHhhhhh
Q 004243 690 VLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHM-ETLDLYNRARDQASHQ 764 (766)
Q Consensus 690 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~ 764 (766)
++...|++++|+..++++++++|++ ..++.+|.++..+|++++|+..|+++++++|+++ .+...+..++..+++.
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 5666999999999999999999999999999998 7788888888777654
No 159
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.37 E-value=5.5e-11 Score=116.87 Aligned_cols=77 Identities=6% Similarity=-0.001 Sum_probs=40.9
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CchhhHHHHHHHHHHCCCHHHHHHHHHHHHcccc
Q 004243 466 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS--SEHERLVYEGWILYDTGHREEALSRAEKSISIER 542 (766)
Q Consensus 466 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 542 (766)
+++.+...+.....+..+|.++...|++++|++.+.+.+..+| .+.+++...+.++...|+.+.|.+.++++.+.+|
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 3444443333344445555555555555555555555555554 4455555555555555555555555555555444
No 160
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=1e-11 Score=136.06 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=150.2
Q ss_pred HhCC-HHHHHHHHHHHHccC--ChHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHhccCCHHHHHHHh----h
Q 004243 597 ECGK-LDQAENCYINALDIK--HTRAHQGLARVYYLKNE----------LKAAYDEMTKLLEKAQYSASAFEKRS----E 659 (766)
Q Consensus 597 ~~g~-~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~~----~ 659 (766)
..|+ .++|++.+++++..+ +..+|+..+.++...|+ ++++++.++++++.+|++..+|..++ .
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444 468899999999995 56799999999999998 99999999999999999999999999 5
Q ss_pred hc--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHc--------
Q 004243 660 YS--DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ-KEVEAVEELSKAIAFKPDL-QMLHLRAAFYESI-------- 727 (766)
Q Consensus 660 ~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~-------- 727 (766)
++ +++++++.++++++.+|.+..+|.+++.++...| .+++++++++++++.+|++ .+|+.++.++...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 67 7799999999999999999999999999999999 9999999999999999998 6777899888875
Q ss_pred ------CCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhh
Q 004243 728 ------GDLTSAIRDSQAALCLDPNHMETLDLYNRARDQAS 762 (766)
Q Consensus 728 ------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 762 (766)
+.+++|++++.+|+.++|++..+|..+.-+.....
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 56899999999999999999999999887765543
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.35 E-value=4.5e-12 Score=115.46 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 004243 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 696 (766)
Q Consensus 617 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 696 (766)
+..+..+|.++...|++++|+..|+++++. +|+++.++.++|.++...|+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------------------~p~~~~~~~~l~~~~~~~g~ 60 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI------------------------------APANPIYLSNRAAAYSASGQ 60 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------STTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------CCcCHHHHHHHHHHHHHccC
Confidence 356777777777777777776666666655 45566677788888888888
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChh--HHHHHHHHHHhhh
Q 004243 697 EVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHME--TLDLYNRARDQAS 762 (766)
Q Consensus 697 ~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~ 762 (766)
+++|+..|+++++++|++ ..++.+|.++..+|++++|+..|+++++++|++++ ....+..++..++
T Consensus 61 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 129 (164)
T 3sz7_A 61 HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE 129 (164)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Confidence 888888888888888887 45558888888888888888888888888888877 4444555554443
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=7.5e-12 Score=108.21 Aligned_cols=102 Identities=11% Similarity=-0.022 Sum_probs=89.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHH
Q 004243 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 553 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 553 (766)
|..+..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--------- 71 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------
Confidence 34567788999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC
Q 004243 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 615 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (766)
..++..+|.++...|++++|+..|+++++++
T Consensus 72 -------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 -------------------------------VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 5567778888888888888888888888775
No 163
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=4.1e-11 Score=114.41 Aligned_cols=144 Identities=13% Similarity=-0.003 Sum_probs=78.9
Q ss_pred HHHHHHHHhccCcH--HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHHHHHHHHHHHhhh
Q 004243 323 WMYQERSLYNLGRE--KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAAD 399 (766)
Q Consensus 323 ~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~~g 399 (766)
++..|..++..+++ |+..|++++ +| ++.+++.+|.++...|++++|+..|+++++.+|+ +..+..+|.++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34445555544443 555555543 22 3445555555555555555555555555555542 223333555555555
Q ss_pred hHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhH
Q 004243 400 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 479 (766)
Q Consensus 400 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~ 479 (766)
++++|+..|+++++..|++... .+. ...+...|..+.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~-----~~~-------------------------------------~~~~~~~~~~~~~ 123 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLI-----DYK-------------------------------------ILGLQFKLFACEV 123 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEE-----ECG-------------------------------------GGTBCCEEEHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHH-----HHH-------------------------------------HhccccCccchHH
Confidence 5555555555555555544420 000 0001122334478
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 511 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 511 (766)
++.+|.++...|++++|+..++++++.+|++.
T Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 124 LYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 88888888889999999999998888888764
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.34 E-value=2.6e-12 Score=121.27 Aligned_cols=162 Identities=13% Similarity=0.047 Sum_probs=106.9
Q ss_pred HHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHH
Q 004243 588 LNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREM 665 (766)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 665 (766)
....+......|++++|.+.++..... .....+..+|..+...|++++|+..|++++...|.++.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------- 77 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--------- 77 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH---------
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh---------
Confidence 344556666777777777777654443 345678899999999999999999999999887766421000
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004243 666 AKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLD 744 (766)
Q Consensus 666 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (766)
........+ ...++.++|.++...|++++|+.+++++++++|++ ..++.+|.++..+|++++|+..|+++++++
T Consensus 78 ~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 78 ILLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 000000000 13677788888888888888888888888888877 455578888888888888888888888888
Q ss_pred CCChhHHHHHHHHHHhhhh
Q 004243 745 PNHMETLDLYNRARDQASH 763 (766)
Q Consensus 745 p~~~~~~~~l~~~~~~~~~ 763 (766)
|+++.++..+..+...+++
T Consensus 153 p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 8888888888877766644
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.34 E-value=4.8e-11 Score=120.36 Aligned_cols=172 Identities=17% Similarity=0.144 Sum_probs=137.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchh------hHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHH
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE------RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 552 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~ 552 (766)
+...+..+...|++++|+..++++++..+..+. .+..+|.++...|++++|+..|++++.+.+.. +.+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~----- 152 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY----- 152 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-----
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-----
Confidence 334577888999999999999999998776654 23358889999999999999999999865543 000
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc------C---ChHHHHHH
Q 004243 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI------K---HTRAHQGL 623 (766)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~---~~~~~~~l 623 (766)
....++.++|.+|...|++++|+.+|+++++. . ...+++++
T Consensus 153 ------------------------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nl 202 (293)
T 3u3w_A 153 ------------------------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 00246899999999999999999999999964 1 22488999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC-HHHHHH
Q 004243 624 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK-EVEAVE 702 (766)
Q Consensus 624 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~ 702 (766)
|.+|..+|++++|+..++++++..+.. ...+..+.++..+|.++...|+ +++|++
T Consensus 203 g~~y~~~~~y~~A~~~~~~al~~~~~~------------------------~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 203 AKALYLDSRYEESLYQVNKAIEISCRI------------------------NSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT------------------------TBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHc------------------------CcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 999999999999999999998774321 1122336789999999999994 699999
Q ss_pred HHHHHHhc
Q 004243 703 ELSKAIAF 710 (766)
Q Consensus 703 ~~~~al~~ 710 (766)
+|++++.+
T Consensus 259 ~~~~Al~i 266 (293)
T 3u3w_A 259 AYKKASFF 266 (293)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999865
No 166
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.33 E-value=3e-11 Score=109.99 Aligned_cols=130 Identities=12% Similarity=0.037 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHh
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 556 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 556 (766)
+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------------ 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence 56788999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHH--HHHHHHHHHhcc
Q 004243 557 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH--QGLARVYYLKNE 632 (766)
Q Consensus 557 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~--~~la~~~~~~g~ 632 (766)
..++..+|.++...|++++|+..|+++++.. ++.++ ..++..+...|+
T Consensus 81 ----------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 132 (166)
T 1a17_A 81 ----------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132 (166)
T ss_dssp ----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 5668889999999999999999999999984 44555 445555888899
Q ss_pred HHHHHHHHHHHHHh
Q 004243 633 LKAAYDEMTKLLEK 646 (766)
Q Consensus 633 ~~~A~~~~~~~l~~ 646 (766)
+++|+..+.+....
T Consensus 133 ~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 133 FERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHcccchHHH
Confidence 99999999887654
No 167
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.33 E-value=1.9e-11 Score=123.39 Aligned_cols=175 Identities=10% Similarity=-0.035 Sum_probs=139.8
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHhccCCcccc
Q 004243 349 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-------CLELRAWLFIAADDYESALRDTLALLALESNYMMF 421 (766)
Q Consensus 349 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 421 (766)
|.....+...+..+...|++++|+..+.++++..+... .++.+|.++...|++++|+..+++++...+.....
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44455667788899999999999999999988776322 13348888889999999999999999876655433
Q ss_pred cccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHH---HcCCCCh----hHHHHHHHHHHhcCCHH
Q 004243 422 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML---INDPGKS----FLRFRQSLLLLRLNCQK 494 (766)
Q Consensus 422 ~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~ 494 (766)
...+.++..+|.++...|++++|.. .+++++ +..|++. .++.++|.+|..+|+++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~------------------~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGID------------------LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHH------------------HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHH------------------HHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH
Confidence 3344688899999999999999853 446666 4455533 68899999999999999
Q ss_pred HHHHHHHHHHhcCCC------chhhHHHHHHHHHHCCCHHHH-HHHHHHHHccc
Q 004243 495 AAMRCLRLARNHSSS------EHERLVYEGWILYDTGHREEA-LSRAEKSISIE 541 (766)
Q Consensus 495 ~A~~~~~~a~~~~p~------~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~ 541 (766)
+|+..++++++..+. .+.+++.+|.++...|++++| ..++++++.+.
T Consensus 214 ~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 999999999887533 267899999999999999999 88899998764
No 168
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=3.4e-11 Score=118.38 Aligned_cols=238 Identities=10% Similarity=-0.006 Sum_probs=168.0
Q ss_pred HhhcccHHHHHHHHHHHHhcCccccHh---HHHHHHHHhccHHHHHHHHhhhccCCCchh-HHHHHHHHhccCcHHHHHH
Q 004243 266 MFEREEYKDACYYFEAAADAGHIYSLA---GLARAKYKVGQQYSAYKLINSIISEHKPTG-WMYQERSLYNLGREKIVDL 341 (766)
Q Consensus 266 ~~~~g~~~~A~~~~~~al~~~~~~~~~---~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~ 341 (766)
.|-.|+|..++.... +..|..... -++|.+...|+... ... ..+.. .+..-..+. .++ |+..|
T Consensus 23 ~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~-------~~~-~~~~~~a~~~la~~~-~~~-a~~~l 89 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQS-------QDP-TSKLGKVLDLYVQFL-DTK-NIEEL 89 (310)
T ss_dssp HHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCC-------CCS-SSTTHHHHHHHHHHH-TTT-CCHHH
T ss_pred HHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCcc-------CCC-CCHHHHHHHHHHHHh-ccc-HHHHH
Confidence 456789988888433 344444333 23355554444211 011 22221 111111222 222 88999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhccCC-
Q 004243 342 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVD-CLELRAWLFIAADDYESALRDTLALLALESN- 417 (766)
Q Consensus 342 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~- 417 (766)
++.++..+....++..+|.++...|++++|+..+.+.+..+| ... .....+.++...|+.+.|.+.++++.+.+|+
T Consensus 90 ~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~ 169 (310)
T 3mv2_B 90 ENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 169 (310)
T ss_dssp HHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 999888767777888999999999999999999999998886 333 3445999999999999999999999999883
Q ss_pred ----cccccccchhhhHHhHHHHHHh--hhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCC--ChhHHHHHHHHHHh
Q 004243 418 ----YMMFHGRVSGDHLVKLLNHHVR--SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRFRQSLLLLR 489 (766)
Q Consensus 418 ----~~~~~~~~~a~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~--~~~~~~~la~~~~~ 489 (766)
+.. .....-+.+....| .+..| +..|+++.+..|+ .+..+++ ++..
T Consensus 170 ~~~~d~~-----l~~Laea~v~l~~g~~~~q~A------------------~~~f~El~~~~p~~~~~~lLln---~~~~ 223 (310)
T 3mv2_B 170 VSGDNEM-----ILNLAESYIKFATNKETATSN------------------FYYYEELSQTFPTWKTQLGLLN---LHLQ 223 (310)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHTCSTTTHH------------------HHHHHHHHTTSCSHHHHHHHHH---HHHH
T ss_pred cccchHH-----HHHHHHHHHHHHhCCccHHHH------------------HHHHHHHHHhCCCcccHHHHHH---HHHH
Confidence 432 12222233344444 55555 5567888877776 2334344 8999
Q ss_pred cCCHHHHHHHHHHHHhc----------CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 490 LNCQKAAMRCLRLARNH----------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 490 ~g~~~~A~~~~~~a~~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
+|++++|.+.++.+++. +|++++++.+++.+....|+ +|.++++++.+.+|++
T Consensus 224 ~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 224 QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 99999999999987776 48899999999999999998 8999999999999998
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.32 E-value=1.6e-11 Score=111.71 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=90.5
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHH
Q 004243 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 553 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 553 (766)
+.++..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--------- 78 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--------- 78 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------
Confidence 45567888899999999999999999999999999999999999999999999999999999999888886
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHH
Q 004243 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI--KHTRAHQGLARV 626 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~ 626 (766)
..+++.+|.++...|++++|+..|++++++ +++.++...+..
T Consensus 79 -------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 79 -------------------------------SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 556777777777778888888888877777 334444444433
No 170
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.31 E-value=3.1e-11 Score=109.95 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 004243 619 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDD 694 (766)
Q Consensus 619 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 694 (766)
.+..+|.++...|++++|+..|+++++..|++..++..+| ..|++++|+..+++++..+|.++.++..+|.++...
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 4444555555555555555555555555555555544444 335555555556666666777778888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCChHH-HH--HHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 695 QKEVEAVEELSKAIAFKPDLQM-LH--LRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 695 g~~~~A~~~~~~al~~~p~~~~-~~--~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
|++++|+..|+++++.+|++.. +. .++..+...|++++|+..++++..+
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999998844 32 4455588889999999999987655
No 171
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.31 E-value=2.1e-11 Score=106.33 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=108.3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHH
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 552 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 552 (766)
.|..+.++..+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-------- 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--------
Confidence 466788999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHh
Q 004243 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK 630 (766)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~ 630 (766)
..++..+|.++...|++++|+..|+++++.. ...++..++.++..+
T Consensus 84 --------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 84 --------------------------------IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred --------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 5668888999999999999999999999884 457888899888877
Q ss_pred cc
Q 004243 631 NE 632 (766)
Q Consensus 631 g~ 632 (766)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 172
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.30 E-value=1.3e-11 Score=106.84 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=85.9
Q ss_pred eEEEE-cCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCC----------------
Q 004243 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR---------------- 119 (766)
Q Consensus 57 v~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~---------------- 119 (766)
|+++. +|+.|.+||.+ |.+|++|++||.+.- .+.|.| ++|+..+++.|++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPL--PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEEC--TTCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceec--CCcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 67776 88999999998 899999999997631 457999 9999999999999999865
Q ss_pred ----------CCCCCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcCChhhHHH
Q 004243 120 ----------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALI 163 (766)
Q Consensus 120 ----------~~~~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~~~~n~~~ 163 (766)
+. ++.+++.+|+.+|+++++.+|...|++++...|. -.++-+
T Consensus 77 ~~i~~wD~~F~~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik-gkt~ee 128 (141)
T 1fs1_B 77 DDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIK-GKTPEE 128 (141)
T ss_dssp ----HHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TCCHHH
T ss_pred hhhhHHHHHHHh-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHH
Confidence 55 8899999999999999999999999999999987 455444
No 173
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.30 E-value=7.8e-12 Score=115.55 Aligned_cols=124 Identities=12% Similarity=0.126 Sum_probs=68.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHH
Q 004243 489 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVI 568 (766)
Q Consensus 489 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 568 (766)
..|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++++|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------------------------ 77 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------------------------ 77 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------------------------
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------------------------
Confidence 34555555555555555555555555555666655666666666666555555554
Q ss_pred HHHHHHHhchhhccccchhHHhhHHH-HHHhCCH--HHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004243 569 QLLEEALRCPSDGLRKGQALNNLGSI-YVECGKL--DQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKL 643 (766)
Q Consensus 569 ~~~~~A~~~~~~~l~~~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 643 (766)
..++..+|.+ +...|++ ++|+..|+++++.+ .+.++..+|.++...|++++|+..++++
T Consensus 78 ----------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 78 ----------------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp ----------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3334455555 4455555 55555555555552 3455666666666666666666666666
Q ss_pred HHhccCCHH
Q 004243 644 LEKAQYSAS 652 (766)
Q Consensus 644 l~~~p~~~~ 652 (766)
++..|++..
T Consensus 142 l~~~p~~~~ 150 (177)
T 2e2e_A 142 MDLNSPRIN 150 (177)
T ss_dssp HHTCCTTSC
T ss_pred HhhCCCCcc
Confidence 666665543
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.29 E-value=2.3e-11 Score=106.88 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=83.4
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQA 739 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~ 739 (766)
|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|++ ..++.+|.++...|++++|+..|++
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444555566677788899999999999999999999999999988 5566899999999999999999999
Q ss_pred HHccCCC-----ChhHHHHHHHHHHhhh
Q 004243 740 ALCLDPN-----HMETLDLYNRARDQAS 762 (766)
Q Consensus 740 al~~~p~-----~~~~~~~l~~~~~~~~ 762 (766)
+++++|+ +..+...+..+.....
T Consensus 103 a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 103 AYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 7888888888776553
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.29 E-value=3.6e-11 Score=113.69 Aligned_cols=167 Identities=16% Similarity=0.136 Sum_probs=124.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHH
Q 004243 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTY 566 (766)
Q Consensus 487 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~ 566 (766)
++..|++++|.+.++......+..+.++..+|.++...|++++|+..+++++++.... +.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~------- 61 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-------------GD------- 61 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-------------CC-------
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc-------------CC-------
Confidence 3567999999996665555434678899999999999999999999999999854322 00
Q ss_pred HHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----C-C----hHHHHHHHHHHHHhccHHHHH
Q 004243 567 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----K-H----TRAHQGLARVYYLKNELKAAY 637 (766)
Q Consensus 567 ~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~-~----~~~~~~la~~~~~~g~~~~A~ 637 (766)
... ...++.++|.++...|++++|+..+++++.. + + ..++.++|.++...|++++|.
T Consensus 62 ---~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 127 (203)
T 3gw4_A 62 ---HTA-----------EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127 (203)
T ss_dssp ---HHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---cHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 000 0356889999999999999999999999987 1 2 246889999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 004243 638 DEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFK 711 (766)
Q Consensus 638 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 711 (766)
..+++++...+...... ....++..+|.++...|++++|+..+++++++.
T Consensus 128 ~~~~~al~~~~~~~~~~------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 128 QEYEKSLVYAQQADDQV------------------------AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHTTCHH------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchH------------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 99999886632211110 013456788999999999999999999988763
No 176
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.28 E-value=4.2e-11 Score=120.76 Aligned_cols=168 Identities=11% Similarity=-0.008 Sum_probs=126.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCC-HHH-----HH-HHHHHHHhhhhHHHHHHHHHHHHhccCCcccccccchhh
Q 004243 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDC-----LE-LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 428 (766)
Q Consensus 356 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~-----~~-~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 428 (766)
...+..+...|++++|+..+++++...+. +.. ++ .+|.++...|++++|+..|++++...+........+.++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34466777888888888888888876652 221 22 277777778888888888888888655544333334567
Q ss_pred hHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHH-------cCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 004243 429 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI-------NDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 501 (766)
Q Consensus 429 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 501 (766)
..+|.++...|++++|..++ +++++ ..+....++.++|.+|..+|++++|+..++
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~------------------~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~ 220 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLF------------------EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHH------------------HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH------------------HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888888888888885333 55552 122334688999999999999999999999
Q ss_pred HHHhcCCCc------hhhHHHHHHHHHHCCC-HHHHHHHHHHHHccc
Q 004243 502 LARNHSSSE------HERLVYEGWILYDTGH-REEALSRAEKSISIE 541 (766)
Q Consensus 502 ~a~~~~p~~------~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~ 541 (766)
++++..+.. +.+++.+|.++...|+ +++|+..|++++.+.
T Consensus 221 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999875433 7789999999999995 799999999999764
No 177
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.28 E-value=6.3e-12 Score=109.58 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=77.4
Q ss_pred hcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH----------HHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcC
Q 004243 660 YSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE----------VEAVEELSKAIAFKPDL-QMLHLRAAFYESIG 728 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g 728 (766)
.+.+++|+..++++++++|+++.+|.++|.++...+++ ++|+..|+++++++|+. .+++++|.+|..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34567777777777777788888888888887777664 58888888888888887 56668888888764
Q ss_pred -----------CHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 004243 729 -----------DLTSAIRDSQAALCLDPNHMETLDLYNRARD 759 (766)
Q Consensus 729 -----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 759 (766)
++++|+++|++|++++|++...+..+..+.+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 8999999999999999998877776665543
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.28 E-value=1.4e-11 Score=105.32 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 662 DREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 662 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~a 740 (766)
++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++ ..++.+|.++...|++++|+..|+++
T Consensus 32 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444555566777788888999999999999999999999999988 55668999999999999999999999
Q ss_pred HccCCCChh
Q 004243 741 LCLDPNHME 749 (766)
Q Consensus 741 l~~~p~~~~ 749 (766)
++++|++++
T Consensus 112 l~~~P~~~~ 120 (121)
T 1hxi_A 112 LLSQPQYEQ 120 (121)
T ss_dssp HC-------
T ss_pred HHhCcCCCC
Confidence 999998754
No 179
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.28 E-value=6.1e-11 Score=104.09 Aligned_cols=119 Identities=13% Similarity=0.028 Sum_probs=101.5
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHH
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 551 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 551 (766)
.+|.++..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------- 76 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------- 76 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-------
Confidence 4577889999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC-------ChHHHHHHH
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-------HTRAHQGLA 624 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~la 624 (766)
..+++.+|.++...|++++|+..|+++++.. ...+...+.
T Consensus 77 ---------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~ 123 (137)
T 3q49_B 77 ---------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123 (137)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence 5668888999999999999999999998873 234555555
Q ss_pred HHHHHh
Q 004243 625 RVYYLK 630 (766)
Q Consensus 625 ~~~~~~ 630 (766)
.+....
T Consensus 124 ~~~~~~ 129 (137)
T 3q49_B 124 IAKKKR 129 (137)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 180
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.27 E-value=2.6e-11 Score=105.23 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=107.8
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHH
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 552 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 552 (766)
+|..+..+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++.+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 79 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-------- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--------
Confidence 455678899999999999999999999999999999999999999999999999999999999999988886
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHh
Q 004243 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK 630 (766)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~ 630 (766)
..++..+|.++...|++++|+..|+++++.. .+.++..+|.++...
T Consensus 80 --------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 80 --------------------------------SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 5567888999999999999999999999884 567888899988887
Q ss_pred ccH
Q 004243 631 NEL 633 (766)
Q Consensus 631 g~~ 633 (766)
|++
T Consensus 128 ~~~ 130 (131)
T 2vyi_A 128 REA 130 (131)
T ss_dssp TTC
T ss_pred hcC
Confidence 764
No 181
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.27 E-value=4.6e-12 Score=119.56 Aligned_cols=149 Identities=15% Similarity=0.061 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhchhhccc----cchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--Ch----------------HHHHH
Q 004243 565 TYVIQLLEEALRCPSDGLR----KGQALNNLGSIYVECGKLDQAENCYINALDIK--HT----------------RAHQG 622 (766)
Q Consensus 565 ~~~~~~~~~A~~~~~~~l~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~----------------~~~~~ 622 (766)
....+.++++.+.+..... ....+..+|..+...|++++|+..|++++... .+ .++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 3445677888777776544 25789999999999999999999999999872 33 67788
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHH
Q 004243 623 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 702 (766)
Q Consensus 623 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 702 (766)
+|.++...|++++|+..++++++. +|.++.+++.+|.++...|++++|+.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~------------------------------~p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKI------------------------------DKNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------------------------------STTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh------------------------------CcccHHHHHHHHHHHHHcccHHHHHH
Confidence 888888888887777776666655 45556677778888888888888888
Q ss_pred HHHHHHhcCCChH-HHHHHHHHHHHcCCHHHHH-HHHHHHHcc
Q 004243 703 ELSKAIAFKPDLQ-MLHLRAAFYESIGDLTSAI-RDSQAALCL 743 (766)
Q Consensus 703 ~~~~al~~~p~~~-~~~~la~~~~~~g~~~~A~-~~~~~al~~ 743 (766)
.|+++++++|++. .+..++.++...++..++. ..|.+.+..
T Consensus 144 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 144 NLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888888874 4447788888888777776 455555543
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.25 E-value=3.8e-11 Score=102.60 Aligned_cols=99 Identities=10% Similarity=-0.036 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Q 004243 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 557 (766)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~ 557 (766)
..++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------------- 84 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------------- 84 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------
Confidence 3477889999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC
Q 004243 558 NLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH 616 (766)
Q Consensus 558 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 616 (766)
..++..+|.++...|++++|+..|+++++.++
T Consensus 85 ---------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 85 ---------------------------IAVHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ---------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 45566667777777777777777777766543
No 183
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.24 E-value=5.8e-11 Score=103.43 Aligned_cols=115 Identities=23% Similarity=0.249 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 004243 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 696 (766)
Q Consensus 617 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 696 (766)
+.++..+|.++...|++++|+..++++++. +|.++.++..+|.++...|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------------------~~~~~~~~~~la~~~~~~~~ 65 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR------------------------------NPKDAKLYSNRAACYTKLLE 65 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT------------------------------CTTCHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------------------CCCcHHHHHHHHHHHHHhcc
Confidence 356777777777777777666666666554 45556667777777777888
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q 004243 697 EVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 761 (766)
Q Consensus 697 ~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 761 (766)
+++|+..++++++.+|++ ..++.+|.++...|++++|+..|+++++++|++..++..++.+....
T Consensus 66 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 66 FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 888888888888777776 44557788888888888888888888888887777777777666543
No 184
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.24 E-value=1.1e-10 Score=99.18 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 004243 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 696 (766)
Q Consensus 617 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 696 (766)
+..+..+|..+...|++++|+..+++++. .+|.++.++..+|.++...|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------------------~~~~~~~~~~~~a~~~~~~~~ 53 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIK------------------------------LDPHNHVLYSNRSAAYAKKGD 53 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------HCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------------------HCCCcHHHHHHHHHHHHhhcc
Confidence 35666777777777777666666665554 455667778888999999999
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 004243 697 EVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARD 759 (766)
Q Consensus 697 ~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 759 (766)
+++|+..++++++.+|++ ..++.+|.++...|++++|+..|+++++++|+++.++..++.+..
T Consensus 54 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 54 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999987 456689999999999999999999999999999999988887764
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.23 E-value=1.2e-10 Score=100.89 Aligned_cols=118 Identities=11% Similarity=-0.051 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHH
Q 004243 619 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV 698 (766)
Q Consensus 619 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 698 (766)
+++.+|.++...|++++|+..|+++++..|++.. .+.+++.+|.++...|+++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------------------------~~~~~~~lg~~~~~~~~~~ 56 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY---------------------------TPNALYWLGESYYATRNFQ 56 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT---------------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc---------------------------cHHHHHHHHHHHHHhccHH
Confidence 4566777777777777777776666655443311 1268889999999999999
Q ss_pred HHHHHHHHHHhcCCCh---H-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhh
Q 004243 699 EAVEELSKAIAFKPDL---Q-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 699 ~A~~~~~~al~~~p~~---~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
+|+..|+++++.+|++ + .++.+|.++...|++++|+..|+++++.+|+++.+.....++.....+
T Consensus 57 ~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 57 LAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 9999999999999986 3 455899999999999999999999999999999988888777765443
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.23 E-value=5.9e-12 Score=135.24 Aligned_cols=139 Identities=12% Similarity=0.066 Sum_probs=100.7
Q ss_pred HhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCC---------------HHHHHHHh-
Q 004243 597 ECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS---------------ASAFEKRS- 658 (766)
Q Consensus 597 ~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~~- 658 (766)
..+++++|+..|+.++.. .....+..+|..++..|++++|+..|+++++..|++ ..+|.++|
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 456777888877777665 345789999999999999999999999999999988 45666666
Q ss_pred ---hhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHH
Q 004243 659 ---EYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAI 734 (766)
Q Consensus 659 ---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~ 734 (766)
..+++++|+..++++++++|+++.+++++|.+|...|++++|+..|+++++++|++ ..+..++.++...|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777666 34446666776666666655
Q ss_pred H
Q 004243 735 R 735 (766)
Q Consensus 735 ~ 735 (766)
.
T Consensus 406 ~ 406 (457)
T 1kt0_A 406 R 406 (457)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.22 E-value=1.1e-10 Score=101.28 Aligned_cols=116 Identities=18% Similarity=0.130 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
..+..+|..+...|++++|+..+++++.. +|.++.++..+|.++...|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------------~~~~~~~~~~~a~~~~~~~~~ 62 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL------------------------------NPANAVYFCNRAAAYSKLGNY 62 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc------------------------------CCCCHHHHHHHHHHHHHhhch
Confidence 45666677766666666666666665554 455566677777788888888
Q ss_pred HHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhh
Q 004243 698 VEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 698 ~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
++|+..+++++..+|++ ..++.+|.++...|++++|+..|+++++++|+++.++..++.+...+++
T Consensus 63 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 88888888888877776 4455778888888888888888888888888887777777777665543
No 188
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.22 E-value=2.3e-10 Score=98.17 Aligned_cols=119 Identities=22% Similarity=0.316 Sum_probs=96.7
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHH
Q 004243 473 DPGK-SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA 551 (766)
Q Consensus 473 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 551 (766)
+|.. +..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 76 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------- 76 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------
Confidence 3444 67888899999999999999999999999999989999999999999999999999999999887775
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHH
Q 004243 552 YILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYL 629 (766)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~ 629 (766)
..++..+|.++...|++++|+..|++++... ++.++..+|.++..
T Consensus 77 ---------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 77 ---------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 4456777888888888888888888888773 45677777777665
Q ss_pred hc
Q 004243 630 KN 631 (766)
Q Consensus 630 ~g 631 (766)
.|
T Consensus 124 ~g 125 (125)
T 1na0_A 124 QG 125 (125)
T ss_dssp HC
T ss_pred cc
Confidence 43
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.22 E-value=1.3e-11 Score=105.12 Aligned_cols=101 Identities=8% Similarity=-0.080 Sum_probs=87.1
Q ss_pred hcCHHHHHHHHHHHHhc---CCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHH
Q 004243 660 YSDREMAKNDLNMATQL---DPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIR 735 (766)
Q Consensus 660 ~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~ 735 (766)
.|++++|+..|+++++. +|+++.++..+|.++...|++++|+..|+++++.+|++ ..++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57778899999999998 58889999999999999999999999999999999999 455589999999999999999
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHh
Q 004243 736 DSQAALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 736 ~~~~al~~~p~~~~~~~~l~~~~~~ 760 (766)
.|+++++..|+++++......+...
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999999999887665555443
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.21 E-value=2.7e-11 Score=130.11 Aligned_cols=133 Identities=8% Similarity=0.033 Sum_probs=119.3
Q ss_pred HHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---------------hhhHHHHHHHHHHCCCHHHHH
Q 004243 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---------------HERLVYEGWILYDTGHREEAL 531 (766)
Q Consensus 467 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~ 531 (766)
..++...|..+..+..+|..+...|+|++|+..|+++++.+|.+ ..++.++|.++..+|++++|+
T Consensus 258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 45556667788999999999999999999999999999999998 689999999999999999999
Q ss_pred HHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHH
Q 004243 532 SRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINA 611 (766)
Q Consensus 532 ~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (766)
..|+++++++|++ ..+++++|.+|..+|++++|+..|+++
T Consensus 338 ~~~~~al~~~p~~----------------------------------------~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 338 ECCDKALGLDSAN----------------------------------------EKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHHHHHHSTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcc----------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999987 667889999999999999999999999
Q ss_pred HccC--ChHHHHHHHHHHHHhccHHHHHHH
Q 004243 612 LDIK--HTRAHQGLARVYYLKNELKAAYDE 639 (766)
Q Consensus 612 l~~~--~~~~~~~la~~~~~~g~~~~A~~~ 639 (766)
++++ +..++..++.++...+++++|...
T Consensus 378 l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 378 LEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9994 557999999999999998877653
No 191
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.7e-10 Score=102.67 Aligned_cols=117 Identities=20% Similarity=0.155 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 004243 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 696 (766)
Q Consensus 617 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 696 (766)
...++.+|..+...|++++|+..|+++++..|++.. ...++..+|.++...|+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------------~~~~~~~~a~~~~~~~~ 80 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD---------------------------QAVLHRNRAACHLKLED 80 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---------------------------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---------------------------HHHHHHHHHHHHHHHcc
Confidence 356667777777777776666666666555443210 16788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 004243 697 EVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 697 ~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 760 (766)
+++|+..++++++.+|++ ..++.+|.++...|++++|+..|+++++++|+++.++..+.++...
T Consensus 81 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999988 5566899999999999999999999999999999999988887643
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.21 E-value=3.8e-10 Score=120.90 Aligned_cols=208 Identities=12% Similarity=0.013 Sum_probs=162.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-----------------hhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH-----------------ERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
|......|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677788889999999999999999999887653 2578999999999999999999999988
Q ss_pred cccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----
Q 004243 540 IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI---- 614 (766)
Q Consensus 540 ~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 614 (766)
..+.. .... ...+...+|.++...|++++|+..+++++..
T Consensus 84 ~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (434)
T 4b4t_Q 84 YMMQFAKSKT-----------------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE 128 (434)
T ss_dssp HHHTSCHHHH-----------------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHccchHH-----------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 65543 1100 0234567788888899999999999999876
Q ss_pred C----ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 004243 615 K----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAV 690 (766)
Q Consensus 615 ~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 690 (766)
. ...++..+|.++...|++++|...+++++...... ...|....++..+|.+
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~ 184 (434)
T 4b4t_Q 129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL------------------------DDKPSLVDVHLLESKV 184 (434)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS------------------------SCSTHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc------------------------ccchhHHHHHHHHHHH
Confidence 1 23588899999999999999999999887653211 1122335678889999
Q ss_pred HHhCCCHHHHHHHHHHHHhcC---CChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 691 LMDDQKEVEAVEELSKAIAFK---PDLQ-----MLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 691 ~~~~g~~~~A~~~~~~al~~~---p~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
|...|++++|...+++++... ++++ .+...|.++...|++++|..+|.++++.
T Consensus 185 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 185 YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999998763 2221 2236788888899999999999998875
No 193
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.19 E-value=4.6e-12 Score=112.32 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=63.4
Q ss_pred ceEEEE-cCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCC---------------
Q 004243 56 SVTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR--------------- 119 (766)
Q Consensus 56 dv~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~--------------- 119 (766)
-|+|+. +|+.|.+||.+ |.+|++|+.||.+.. ..+.|+| ++|+..+++.|++|+|+..
T Consensus 5 ~v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~ 78 (160)
T 2p1m_A 5 KIVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPL--PNVTSKILAKVIEYCKRHVEAAASKAEAVEGAAT 78 (160)
T ss_dssp ---CCC---------CHH-HHTCTTTC---------------CC--TTSCHHHHHHHHHC--------------------
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeC--CcCcHHHHHHHHHHHHHcccCCCccccccccccc
Confidence 467775 89999999998 889999999998753 2347999 9999999999999999876
Q ss_pred ------------CCCCCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcC--ChhhHHHHHHHHHhhCh
Q 004243 120 ------------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDYGLEERA 173 (766)
Q Consensus 120 ------------~~~~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~--~~~n~~~~~~~a~~~~~ 173 (766)
+. ++.+++.+|+.+|+++++.+|...|++++...|. +++.+-.++.+...+.-
T Consensus 79 ~~~~i~~wD~~Fl~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~ 145 (160)
T 2p1m_A 79 SDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTP 145 (160)
T ss_dssp -----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCH
T ss_pred ccchhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCH
Confidence 23 7788999999999999999999999999999993 27777777666554443
No 194
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=6.1e-08 Score=104.44 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 495 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 495 ~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.....|++++...|..+..|...+..+...|+.++|...|++++.. |..
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~ 245 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG 245 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc
Confidence 4555666666666666667777776666677777777777777766 665
No 195
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.18 E-value=2.6e-12 Score=138.56 Aligned_cols=135 Identities=12% Similarity=0.053 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHh
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 556 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~ 556 (766)
+..+..+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|++.++++++++|++
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------------ 73 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------------ 73 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------------
Confidence 44566777888889999999999999999999999999999999999999999999999999988887
Q ss_pred cCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHH--HHHhcc
Q 004243 557 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARV--YYLKNE 632 (766)
Q Consensus 557 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~--~~~~g~ 632 (766)
..+++++|.+|..+|++++|+..|++++++. ++.++..++.+ +...|+
T Consensus 74 ----------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~ 125 (477)
T 1wao_1 74 ----------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125 (477)
T ss_dssp ----------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 5667888888899999999999999998883 45677788877 888889
Q ss_pred HHHHHHHHH-----------HHHHhccCCH
Q 004243 633 LKAAYDEMT-----------KLLEKAQYSA 651 (766)
Q Consensus 633 ~~~A~~~~~-----------~~l~~~p~~~ 651 (766)
+++|++.++ ++++..|+..
T Consensus 126 ~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 126 FERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHhccccccchhHhhhhhhhcccccccc
Confidence 999999888 6666666543
No 196
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.18 E-value=4.1e-10 Score=95.45 Aligned_cols=111 Identities=13% Similarity=0.185 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 555 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~ 555 (766)
.+..+..+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----------- 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-----------
Confidence 346778888888889999999999999988888888888889999988999999999999888888775
Q ss_pred hcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHH
Q 004243 556 DTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARV 626 (766)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~ 626 (766)
..++..+|.++...|++++|+..|+++++.+ ++.++..++.+
T Consensus 72 -----------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 72 -----------------------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4556777777777888888888888877773 34555555554
No 197
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.18 E-value=4.9e-10 Score=96.08 Aligned_cols=114 Identities=26% Similarity=0.311 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 004243 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQK 696 (766)
Q Consensus 617 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 696 (766)
..++..+|.++...|++++|+..+++++.. .|.++.++..+|.++...|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------------~~~~~~~~~~la~~~~~~~~ 58 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------------------DPNNAEAWYNLGNAYYKQGD 58 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------------------CcCcHHHHHHHHHHHHHhCC
Confidence 345666666666666666666666655544 55556677788888999999
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 004243 697 EVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQ 760 (766)
Q Consensus 697 ~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 760 (766)
+++|+..+++++...|++ ..+..+|.++...|++++|+..|+++++.+|+++.++..++.+...
T Consensus 59 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 59 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999888877 4555889999999999999999999999999998888888777654
No 198
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.17 E-value=1.4e-10 Score=97.43 Aligned_cols=103 Identities=15% Similarity=0.041 Sum_probs=87.7
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccc--hHHHHHH
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT--FEAFFLK 550 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 550 (766)
+|+++..+..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+ +
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------ 75 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN------ 75 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch------
Confidence 57888889999999999999999999999999999999999999999999999999999999999988887 5
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHh-CCHHHHHHHHHHHHccC
Q 004243 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVEC-GKLDQAENCYINALDIK 615 (766)
Q Consensus 551 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~ 615 (766)
..++..+|.++... |++++|++++++++...
T Consensus 76 ----------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 76 ----------------------------------KDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp ----------------------------------HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred ----------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 44567777777777 78888888887777663
No 199
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.16 E-value=1.7e-10 Score=104.67 Aligned_cols=115 Identities=17% Similarity=0.027 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNH------------------SSSEHERLVYEGWILYDTGHREEALSRAEKSI 538 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (766)
+..+..+|..++..|+|++|+..|++++.. +|..+.++.++|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467788999999999999999999999988 66667788888888888888888888888888
Q ss_pred ccccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCCh-
Q 004243 539 SIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHT- 617 (766)
Q Consensus 539 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~- 617 (766)
+++|++ ..+++.+|.++...|++++|+..|+++++++|.
T Consensus 91 ~~~p~~----------------------------------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 91 KREETN----------------------------------------EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHSTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred hcCCcc----------------------------------------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 888886 556777788888888888888888888877543
Q ss_pred --HHHHHHHHHHHHhc
Q 004243 618 --RAHQGLARVYYLKN 631 (766)
Q Consensus 618 --~~~~~la~~~~~~g 631 (766)
.+...++.+....+
T Consensus 131 ~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 131 ASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 23445555544433
No 200
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.15 E-value=2e-10 Score=99.61 Aligned_cols=117 Identities=19% Similarity=0.128 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
..+..+|.++...|++++|+..+++++.. +|.++.++..+|.++...|++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------------------~~~~~~~~~~la~~~~~~~~~ 54 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL------------------------------DPTNMTYITNQAAVYFEKGDY 54 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------------------CCccHHHHHHHHHHHHHhccH
Confidence 45667777777777776666666666554 455667788889999999999
Q ss_pred HHHHHHHHHHHhcCCCh--------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhhhc
Q 004243 698 VEAVEELSKAIAFKPDL--------QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASHQQ 765 (766)
Q Consensus 698 ~~A~~~~~~al~~~p~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 765 (766)
++|+.++++++...|++ ..++.+|.++...|++++|+..|++++++.| +++....+..+...+++.+
T Consensus 55 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 55 NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 99999999999987653 3455889999999999999999999999999 5888899988888877654
No 201
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.15 E-value=1.5e-10 Score=120.13 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCH
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKE 697 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 697 (766)
..+..+|..+...|++++|+..|+++++..+... +....+.....+|.++.++.++|.++...|++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 289 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------------AAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------------cccChHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 3466667777777777777777777766543221 01113334456677788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhhhh
Q 004243 698 VEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQASH 763 (766)
Q Consensus 698 ~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 763 (766)
++|+.+++++++++|++ ..++.+|.+|..+|++++|+..|+++++++|+++.++..+..+...+++
T Consensus 290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988 5666899999999999999999999999999999999998888876654
No 202
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.15 E-value=5.5e-10 Score=105.48 Aligned_cols=143 Identities=16% Similarity=0.152 Sum_probs=117.4
Q ss_pred CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHh------cCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchH
Q 004243 473 DP-GKSFLRFRQSLLLLRLNCQKAAMRCLRLARN------HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (766)
Q Consensus 473 ~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 545 (766)
+| ..+.++..+|.++...|++++|+..+++++. ..|....++..+|.++...|++++|+..+++++++.+..
T Consensus 21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 99 (203)
T 3gw4_A 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL- 99 (203)
T ss_dssp STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-
T ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-
Confidence 44 5678999999999999999999999999988 445567889999999999999999999999999863211
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CCh----
Q 004243 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KHT---- 617 (766)
Q Consensus 546 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~---- 617 (766)
+.. ... ...++.++|.++...|++++|+..+++++.. +++
T Consensus 100 ------------~~~---------~~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 100 ------------PED---------PLA-----------ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp ------------CCC---------HHH-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------Ccc---------HHH-----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 000 000 0356889999999999999999999999976 222
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 648 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 648 (766)
.++.++|.++...|++++|...++++++...
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999987743
No 203
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=3.8e-10 Score=120.97 Aligned_cols=211 Identities=8% Similarity=-0.076 Sum_probs=144.9
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHH------------------HHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 004243 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD------------------CLELRAWLFIAADDYESALRDTLALLA 413 (766)
Q Consensus 352 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~------------------~~~~~a~~~~~~g~~~~A~~~~~~al~ 413 (766)
|.+....|..+...|++++|++.|.++++..|... .+..+|.+|...|++++|++.+++++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455666667777777777777777776655211 134478888888888888888888777
Q ss_pred ccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHc------CCCChhHHHHHHHHH
Q 004243 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN------DPGKSFLRFRQSLLL 487 (766)
Q Consensus 414 ~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~------~p~~~~~~~~la~~~ 487 (766)
..+..........+...++.++...+.++.|.... .+++.. .+....++..+|.++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------------~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVC------------------EKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHH------------------HHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHH------------------HHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 65554321111123444555555555566554322 333322 233456788999999
Q ss_pred HhcCCHHHHHHHHHHHHhc------CCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCC
Q 004243 488 LRLNCQKAAMRCLRLARNH------SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD 560 (766)
Q Consensus 488 ~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~ 560 (766)
...|+|++|+..+++++.. .+....++..+|.++...|++++|...+++++...+.. .....
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----------- 214 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT----------- 214 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-----------
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH-----------
Confidence 9999999999999988754 23446789999999999999999999999999765443 00000
Q ss_pred CCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 561 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 561 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
.+..+..+|.++...|++++|..+|.+++..
T Consensus 215 -----------------------~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 215 -----------------------VAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp -----------------------HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 0345778889999999999999999998875
No 204
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.14 E-value=1e-11 Score=133.79 Aligned_cols=132 Identities=17% Similarity=0.165 Sum_probs=87.3
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCH
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDR 663 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 663 (766)
..+..+|..+...|++++|+..|+++++.+ ...++.++|.++..+|++++|+..+++
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------------------- 65 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR--------------------- 65 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------
Confidence 445556666666666666666666666652 345566666666666665555555544
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH--HHHcCCHHHHHHHHH--
Q 004243 664 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAF--YESIGDLTSAIRDSQ-- 738 (766)
Q Consensus 664 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~--~~~~g~~~~A~~~~~-- 738 (766)
+++++|+++.++.++|.+|..+|++++|++.|+++++++|++ ..+..++.+ +...|++++|++.++
T Consensus 66 ---------al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 66 ---------AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp ---------HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred ---------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 555566667777888888888888888888888888888877 445566666 777888888888888
Q ss_pred ---------HHHccCCCC
Q 004243 739 ---------AALCLDPNH 747 (766)
Q Consensus 739 ---------~al~~~p~~ 747 (766)
++++++|++
T Consensus 137 ~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 137 RSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp CSTTTCCTTSSCCCCTTC
T ss_pred chhHhhhhhhhccccccc
Confidence 777777765
No 205
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=6.7e-10 Score=98.70 Aligned_cols=115 Identities=13% Similarity=0.036 Sum_probs=87.6
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHH
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFF 548 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 548 (766)
..|.....+..+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---- 98 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---- 98 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----
Confidence 356778888888999999999999999999999888887 7888888888888888888888888888887775
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHH
Q 004243 549 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARV 626 (766)
Q Consensus 549 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~ 626 (766)
..++..+|.++...|++++|+..|+++++.. ++.++..++.+
T Consensus 99 ------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 99 ------------------------------------VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 4456666667777777777777777776663 33444444443
No 206
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.12 E-value=1.9e-10 Score=96.54 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=69.6
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--h-HHHHHHHHHHHHc-CCHHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPD--L-QMLHLRAAFYESI-GDLTSAIRD 736 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-~~~~~la~~~~~~-g~~~~A~~~ 736 (766)
|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+ . ..++.+|.++... |++++|++.
T Consensus 20 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 99 (112)
T 2kck_A 20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIA 99 (112)
T ss_dssp CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444444444555556666777888888999999999999999999999888 6 5566889999999 999999999
Q ss_pred HHHHHccCCCCh
Q 004243 737 SQAALCLDPNHM 748 (766)
Q Consensus 737 ~~~al~~~p~~~ 748 (766)
+++++...|+++
T Consensus 100 ~~~~~~~~p~~~ 111 (112)
T 2kck_A 100 EARAKLEHHHHH 111 (112)
T ss_dssp HHHHGGGCCCCC
T ss_pred HHHHhhcccCCC
Confidence 999999988764
No 207
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.11 E-value=5.2e-11 Score=122.36 Aligned_cols=71 Identities=14% Similarity=0.036 Sum_probs=50.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchh-----------------hHHHHHHHHHHCCCHHHHHHHHHH
Q 004243 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE-----------------RLVYEGWILYDTGHREEALSRAEK 536 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~ 536 (766)
+..+..+..+|..+...|++++|+..|++++...|++.. +++++|.++...|++++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334567889999999999999999999999999888762 455555555555555555555555
Q ss_pred HHccccch
Q 004243 537 SISIERTF 544 (766)
Q Consensus 537 al~~~p~~ 544 (766)
+++++|++
T Consensus 256 al~~~p~~ 263 (338)
T 2if4_A 256 VLTEEEKN 263 (338)
T ss_dssp HHHHCTTC
T ss_pred HHHhCCCC
Confidence 55555544
No 208
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.11 E-value=6.7e-11 Score=121.54 Aligned_cols=150 Identities=11% Similarity=0.011 Sum_probs=73.6
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh----hh
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS----EY 660 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~----~~ 660 (766)
...+..+|..+...|++++|+..|++++...+... .+...+++.++...+.. .++.++| ..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~------~~~~~~~~~~~~~~l~~---------~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF------MFQLYGKYQDMALAVKN---------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH------HHTCCHHHHHHHHHHHT---------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch------hhhhcccHHHHHHHHHH---------HHHHHHHHHHHHc
Confidence 46677788888888888888888888877754332 11223333333322211 1344444 44
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHH-HHHHHHH-HHHcCCHHHHHHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQM-LHLRAAF-YESIGDLTSAIRDSQ 738 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~la~~-~~~~g~~~~A~~~~~ 738 (766)
+++++|+..++++++++|+++.+++++|.++...|++++|+..|+++++++|++.. +..++.+ ....+..+++...|.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777888888888888888888888888888888888744 4466666 344567788888888
Q ss_pred HHHccCCCChh
Q 004243 739 AALCLDPNHME 749 (766)
Q Consensus 739 ~al~~~p~~~~ 749 (766)
+++...|+++.
T Consensus 324 ~~l~~~p~~~~ 334 (338)
T 2if4_A 324 GIFKGKDEGGA 334 (338)
T ss_dssp -----------
T ss_pred HhhCCCCCCCC
Confidence 88888887754
No 209
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.10 E-value=9.5e-10 Score=99.29 Aligned_cols=139 Identities=17% Similarity=0.049 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch------hhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHH
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH------ERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLK 550 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 550 (766)
..++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|+..+++++++.+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 45788999999999999999999999998765432 47889999999999999999999999986554300
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc----CC----hHHHHH
Q 004243 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI----KH----TRAHQG 622 (766)
Q Consensus 551 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~----~~~~~~ 622 (766)
... ...++..+|.++...|++++|+..+++++.. +. ..++..
T Consensus 85 -------------------~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 85 -------------------RAV-----------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp -------------------HHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------cHH-----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 000 0356889999999999999999999999987 11 357899
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhccC
Q 004243 623 LARVYYLKNELKAAYDEMTKLLEKAQY 649 (766)
Q Consensus 623 la~~~~~~g~~~~A~~~~~~~l~~~p~ 649 (766)
+|.++...|++++|...++++++....
T Consensus 135 la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987554
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.10 E-value=2.4e-10 Score=99.66 Aligned_cols=82 Identities=12% Similarity=-0.029 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCchhhHHHHHHHHHHCC-------
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQ----------KAAMRCLRLARNHSSSEHERLVYEGWILYDTG------- 525 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g------- 525 (766)
+..++++++.+|+++.+|.++|.++..++++ ++|+..|+++++++|+++++++++|.+|...|
T Consensus 22 ~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~ 101 (158)
T 1zu2_A 22 RQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDET 101 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchh
Confidence 5667999999999999999999999998875 59999999999999999999999999999885
Q ss_pred ----CHHHHHHHHHHHHccccch
Q 004243 526 ----HREEALSRAEKSISIERTF 544 (766)
Q Consensus 526 ----~~~~A~~~~~~al~~~p~~ 544 (766)
++++|+++|+++++++|++
T Consensus 102 ~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 102 EAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhhccHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999998
No 211
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.05 E-value=1.3e-09 Score=112.93 Aligned_cols=122 Identities=12% Similarity=0.000 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARN----------------HSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (766)
+..+..+|..+...|++++|+..|+++++ .+|.++.++.++|.++..+|++++|+..+++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 35688999999999999999999999998 66777888889999999999999999999999988
Q ss_pred ccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChH
Q 004243 541 ERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTR 618 (766)
Q Consensus 541 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 618 (766)
+|++ ..+++.+|.+|...|++++|+..|++++++. +..
T Consensus 303 ~p~~----------------------------------------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 303 DPSN----------------------------------------TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp CTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred Cchh----------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 8876 5667888888888888888888888888884 456
Q ss_pred HHHHHHHHHHHhccHHHHHH
Q 004243 619 AHQGLARVYYLKNELKAAYD 638 (766)
Q Consensus 619 ~~~~la~~~~~~g~~~~A~~ 638 (766)
++..++.++...++.+++.+
T Consensus 343 ~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 343 IQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888887776654
No 212
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.04 E-value=1.1e-09 Score=94.69 Aligned_cols=120 Identities=15% Similarity=0.150 Sum_probs=99.7
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcC
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSD 662 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 662 (766)
+..+..+|.++...|++++|+..|++++... ++.++..+|.++...|++++|+..+++++...|++...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------- 76 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR------- 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH-------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH-------
Confidence 5678999999999999999999999999984 5678999999999999999999999999988664311100
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 004243 663 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESI 727 (766)
Q Consensus 663 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~ 727 (766)
..+.++..+|.++...|++++|+..|+++++..|+......++.+....
T Consensus 77 ----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 77 ----------------QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 0156788999999999999999999999999999766666777666544
No 213
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.02 E-value=4.1e-09 Score=91.10 Aligned_cols=101 Identities=12% Similarity=-0.011 Sum_probs=93.2
Q ss_pred hhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHH
Q 004243 426 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS---FLRFRQSLLLLRLNCQKAAMRCLRL 502 (766)
Q Consensus 426 ~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~ 502 (766)
.++..+|..+...|++++|. ..+.++++..|+++ .+++.+|.++...|++++|+..|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~------------------~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 64 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDAS------------------QLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHH------------------HHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHH------------------HHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35677888888999999984 45589999999988 7999999999999999999999999
Q ss_pred HHhcCCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 503 ARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 503 a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
+++.+|++ +.+++.+|.++...|++++|+..|+++++..|++
T Consensus 65 ~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 99999999 8889999999999999999999999999999988
No 214
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.02 E-value=1.1e-09 Score=98.89 Aligned_cols=139 Identities=19% Similarity=0.148 Sum_probs=113.3
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHccC----C----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHH
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDIK----H----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK 656 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 656 (766)
..++..+|.++...|++++|+..++++++.. + ..++..+|.++...|++++|+..++++++..+.....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--- 85 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR--- 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---
Confidence 4678999999999999999999999999872 1 1488999999999999999999999998775432110
Q ss_pred HhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---Ch----HHHHHHHHHHHHcCC
Q 004243 657 RSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP---DL----QMLHLRAAFYESIGD 729 (766)
Q Consensus 657 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~la~~~~~~g~ 729 (766)
+....++..+|.++...|++++|+..++++++..+ +. ..+..+|.++...|+
T Consensus 86 ---------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 86 ---------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence 11246778899999999999999999999987732 22 234488999999999
Q ss_pred HHHHHHHHHHHHccCCCC
Q 004243 730 LTSAIRDSQAALCLDPNH 747 (766)
Q Consensus 730 ~~~A~~~~~~al~~~p~~ 747 (766)
+++|+..+++++++....
T Consensus 145 ~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 145 HDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999876543
No 215
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.01 E-value=2.5e-09 Score=90.36 Aligned_cols=94 Identities=11% Similarity=0.050 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 665 MAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 665 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
+|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++ ..++.+|.++...|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57888999999999999999999999999999999999999999999998 56669999999999999999999999999
Q ss_pred CCCC--hhHHHHHHHHH
Q 004243 744 DPNH--METLDLYNRAR 758 (766)
Q Consensus 744 ~p~~--~~~~~~l~~~~ 758 (766)
+|++ ..+...+....
T Consensus 83 ~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 8854 33444443333
No 216
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.97 E-value=1.4e-09 Score=92.35 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=78.8
Q ss_pred HHHHHHHHHc---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 463 LAVINQMLIN---DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 463 l~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
+..|+++++. +|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..++++++
T Consensus 10 ~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 10 VPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677999999 5888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccch
Q 004243 540 IERTF 544 (766)
Q Consensus 540 ~~p~~ 544 (766)
..|++
T Consensus 90 ~~p~~ 94 (117)
T 3k9i_A 90 ETSDD 94 (117)
T ss_dssp HHCCC
T ss_pred hCCCc
Confidence 99987
No 217
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=6.8e-07 Score=96.29 Aligned_cols=347 Identities=9% Similarity=-0.098 Sum_probs=201.3
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhc-
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADD-YESALRDTLALLAL- 414 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~- 414 (766)
|...|++++...|. |+++.+...|++++...|+...|..........++ .+.....|+.++..
T Consensus 14 aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v 78 (493)
T 2uy1_A 14 PSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF 78 (493)
T ss_dssp HHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc
Confidence 66777777777665 78999999999999888877766655555544442 35566778888764
Q ss_pred --cCCcccccccchhhhHHhHHHH----HHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHH-HHHHHH-
Q 004243 415 --ESNYMMFHGRVSGDHLVKLLNH----HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR-FRQSLL- 486 (766)
Q Consensus 415 --~p~~~~~~~~~~a~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~-~~la~~- 486 (766)
+|.+.. .+........ ..+..+.+ -..|++++...+.+..-+ ......
T Consensus 79 g~d~~s~~------iW~~Yi~f~~~~~~~~~~~~~v------------------R~iy~rAL~~P~~~~~~lw~~Y~~fE 134 (493)
T 2uy1_A 79 ENYWDSYG------LYKEYIEEEGKIEDEQTRIEKI------------------RNGYMRALQTPMGSLSELWKDFENFE 134 (493)
T ss_dssp TTCTTCHH------HHHHHHHHTSSCSSHHHHHHHH------------------HHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred CCCcccHH------HHHHHHHHHHhchhhhHHHHHH------------------HHHHHHHHhChhhhHHHHHHHHHHHH
Confidence 444432 2222222111 11222222 234567776433222211 111111
Q ss_pred ------------HHhcCCHHHHHHHHHHHHhcCCC-chhhHHHHHHHHHHC--CC-----HHHHHHHHHHHHccccch-H
Q 004243 487 ------------LLRLNCQKAAMRCLRLARNHSSS-EHERLVYEGWILYDT--GH-----REEALSRAEKSISIERTF-E 545 (766)
Q Consensus 487 ------------~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~lg~~~~~~--g~-----~~~A~~~~~~al~~~p~~-~ 545 (766)
-...+.+..|...++.+....+. +...|..+...-... |- .+.....|++++...|.. .
T Consensus 135 ~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~ 214 (493)
T 2uy1_A 135 LELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEE 214 (493)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHH
Confidence 11123344555555554443222 233444433332221 11 345677899999988888 7
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccc-cc--hhHHhhHHHHHHhCCHHHHHHHHHHHHc---------
Q 004243 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR-KG--QALNNLGSIYVECGKLDQAENCYINALD--------- 613 (766)
Q Consensus 546 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~--------- 613 (766)
.|...+..+...+ +.++|...|++++. |. ..+...+.. .+.++....+.....
T Consensus 215 lW~~ya~~~~~~~-----------~~~~ar~i~erAi~~P~~~~l~~~y~~~----~e~~~~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 215 VYFFYSEYLIGIG-----------QKEKAKKVVERGIEMSDGMFLSLYYGLV----MDEEAVYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCCSSHHHHHHHHH----TTCTHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHhCCCcHHHHHHHHhh----cchhHHHHHHHHHHHhhccchhhh
Confidence 8887777776655 44555555555533 32 222222221 111111111111110
Q ss_pred -c--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh-----hhcCHHHHHHHHHHHHhcCCCCchhHH
Q 004243 614 -I--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS-----EYSDREMAKNDLNMATQLDPLRTYPYR 685 (766)
Q Consensus 614 -~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~ 685 (766)
. .+..+|...+....+.++.+.|...|+++ ...+.....|...+ ..++.+.|...|+.+++..|+.+..+.
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE 358 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 0 12356778888877888899999999999 33233445555444 223688999999999998888888888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004243 686 YRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALC 742 (766)
Q Consensus 686 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 742 (766)
..+......|+.+.|...|+++. .. ..|......-...|+.+.+.+.+++++.
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888899999999999872 33 3444556666677999999998888874
No 218
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.91 E-value=7.8e-09 Score=87.26 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHcccc
Q 004243 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 542 (766)
Q Consensus 463 l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 542 (766)
+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|
T Consensus 5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ch
Q 004243 543 TF 544 (766)
Q Consensus 543 ~~ 544 (766)
+.
T Consensus 85 ~~ 86 (115)
T 2kat_A 85 SR 86 (115)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.86 E-value=5e-09 Score=85.83 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=66.0
Q ss_pred cCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhH
Q 004243 676 LDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMET 750 (766)
Q Consensus 676 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 750 (766)
.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..++.+|.++...|++++|+..|++++++.|++++.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 478899999999999999999999999999999999998 566699999999999999999999999998765443
No 220
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.85 E-value=1.4e-08 Score=83.06 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=68.1
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 472 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999988765
No 221
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.80 E-value=2.5e-08 Score=79.85 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=76.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHH
Q 004243 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 553 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~ 553 (766)
..+.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++|++ .++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999999999999999999 888888877
Q ss_pred HHhc
Q 004243 554 LADT 557 (766)
Q Consensus 554 l~~~ 557 (766)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 222
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.80 E-value=2.3e-08 Score=80.03 Aligned_cols=82 Identities=24% Similarity=0.242 Sum_probs=74.6
Q ss_pred CCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 004243 679 LRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRA 757 (766)
Q Consensus 679 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 757 (766)
..+.++..+|.++...|++++|+..|+++++.+|++ ..++.+|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 356789999999999999999999999999999988 5566899999999999999999999999999999999988887
Q ss_pred HHh
Q 004243 758 RDQ 760 (766)
Q Consensus 758 ~~~ 760 (766)
...
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 223
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.80 E-value=2.2e-08 Score=80.10 Aligned_cols=81 Identities=26% Similarity=0.304 Sum_probs=69.6
Q ss_pred ceEEEE-cCeEEEeehHHHhcCCHHHHHHhcCCCccCCCCeEEecCCCCCHHHHHHHHHHhhcCC-----------CCC-
Q 004243 56 SVTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR-----------VDL- 122 (766)
Q Consensus 56 dv~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~-----------~~~- 122 (766)
-|+++. +|+.|.+||.+ |.+|.+++.||.+++ |...+.|.| ++|+..+++.|++|+|.-. +..
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Ipl--p~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w 80 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIEL--KQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEE--TTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceec--CCcCHHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence 477777 89999999997 899999999999877 666678999 9999999999999998532 211
Q ss_pred -CCHHHHHHHHHHhhhhCh
Q 004243 123 -FCPGIVLELLSFANRFCC 140 (766)
Q Consensus 123 -~~~~~~~~~l~~a~~~~~ 140 (766)
++.+.+.+|+.+|+++++
T Consensus 81 ~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 81 EIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 788999999999999875
No 224
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.76 E-value=9.1e-08 Score=83.48 Aligned_cols=120 Identities=15% Similarity=0.125 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCC
Q 004243 599 GKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDP 678 (766)
Q Consensus 599 g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 678 (766)
+++++|+.+|+++.+.+++.+. +|.+|...+..++|+..|+++.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACEL-------------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--------------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--------------------------------
Confidence 3566777777777777666666 777766666666665555555433
Q ss_pred CCchhHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCChhH
Q 004243 679 LRTYPYRYRAAVLMD----DQKEVEAVEELSKAIAFKPDLQMLHLRAAFYES----IGDLTSAIRDSQAALCLDPNHMET 750 (766)
Q Consensus 679 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 750 (766)
.++.+++++|.+|.. .+++++|+.+|+++.+. .+....+++|.+|.. .+|+++|+.+|+++.+. .++++
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A 131 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDA 131 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence 356677777878777 77888888888888765 334566678888887 78888888888888876 34555
Q ss_pred HHHHH
Q 004243 751 LDLYN 755 (766)
Q Consensus 751 ~~~l~ 755 (766)
...+.
T Consensus 132 ~~~l~ 136 (138)
T 1klx_A 132 CGILN 136 (138)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 54443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.76 E-value=6.2e-08 Score=83.30 Aligned_cols=101 Identities=8% Similarity=0.028 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC---CHHHHHHHHHHHHhcC-C-Ch-HHHHHHHHHHHHcCCHHHHHHHH
Q 004243 664 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQ---KEVEAVEELSKAIAFK-P-DL-QMLHLRAAFYESIGDLTSAIRDS 737 (766)
Q Consensus 664 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~-~~~~~la~~~~~~g~~~~A~~~~ 737 (766)
..+...|.+.++.+|.+..+.+++|+++.+.+ +.++++..++..++.+ | +. ..+|++|..+.++|+|++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 56677788888888889999999999999998 6779999999999998 7 33 77889999999999999999999
Q ss_pred HHHHccCCCChhHHHHHHHHHHhhhhh
Q 004243 738 QAALCLDPNHMETLDLYNRARDQASHQ 764 (766)
Q Consensus 738 ~~al~~~p~~~~~~~~l~~~~~~~~~~ 764 (766)
+++++++|+|..+..+...++...++.
T Consensus 95 ~~lL~ieP~n~QA~~Lk~~ie~~~~kd 121 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELERLIDKAMKKD 121 (152)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888764
No 226
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=5.9e-08 Score=81.00 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=58.7
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------hhHHHH
Q 004243 681 TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNH------METLDL 753 (766)
Q Consensus 681 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 753 (766)
+.++..+|.++...|++++|+..|+++++.+|++ ..++++|.++..+|++++|+..|+++++++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4566777777777777777777777777777776 344477777777777777777777777777777 666666
Q ss_pred HHHHHHhhh
Q 004243 754 YNRARDQAS 762 (766)
Q Consensus 754 l~~~~~~~~ 762 (766)
++.+...++
T Consensus 84 ~~~~~~~~~ 92 (111)
T 2l6j_A 84 LELAQGAVG 92 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555443
No 227
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.72 E-value=8e-08 Score=102.47 Aligned_cols=132 Identities=8% Similarity=-0.084 Sum_probs=107.4
Q ss_pred hhHHHHHHhCCHHHHHHHHHHHHcc-------CCh---HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhh
Q 004243 590 NLGSIYVECGKLDQAENCYINALDI-------KHT---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (766)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~-------~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 659 (766)
..+..+..+|+|++|+..+++++++ +++ .++.++|.+|..+|++++|...+++++++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i------------- 380 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG------------- 380 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------------
Confidence 3445677899999999999999987 344 47899999999999999999999999866
Q ss_pred hcCHHHHHHHHHHHH-hcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCChHHH----HHHHHHHHHcCC
Q 004243 660 YSDREMAKNDLNMAT-QLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF-----KPDLQML----HLRAAFYESIGD 729 (766)
Q Consensus 660 ~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~----~~la~~~~~~g~ 729 (766)
+++.+ ...|+....+.++|.+|..+|++++|+.+|++|+++ -|+++.. .+++.++..+|.
T Consensus 381 ----------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 381 ----------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ----------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 22222 223444678899999999999999999999999876 5666432 278999999999
Q ss_pred HHHHHHHHHHHHccC
Q 004243 730 LTSAIRDSQAALCLD 744 (766)
Q Consensus 730 ~~~A~~~~~~al~~~ 744 (766)
+++|...|+++.+-.
T Consensus 451 ~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 451 FRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.72 E-value=2e-07 Score=88.99 Aligned_cols=86 Identities=13% Similarity=0.010 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHH-cCCHH
Q 004243 662 DREMAKNDLNMATQLDPL--RTYPYRYRAAVLMDD-----QKEVEAVEELSKAIAFKPDL--QMLHLRAAFYES-IGDLT 731 (766)
Q Consensus 662 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~--~~~~~la~~~~~-~g~~~ 731 (766)
...+|...++++++++|+ +..+|..+|.+|... |+.++|.++|+++++++|+. ...+..|..+.. .|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 348899999999999998 678999999999995 99999999999999999964 666688998887 59999
Q ss_pred HHHHHHHHHHccCCCC
Q 004243 732 SAIRDSQAALCLDPNH 747 (766)
Q Consensus 732 ~A~~~~~~al~~~p~~ 747 (766)
+|.+.+++++..+|..
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999998874
No 229
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.71 E-value=2e-08 Score=79.93 Aligned_cols=81 Identities=31% Similarity=0.412 Sum_probs=63.6
Q ss_pred eEEEE-cCeEEEeehHHHhcCCHHHHHHhcC--CCccCCCCeEEecCCCCCHHHHHHHHHHhhcCC--------CCC--C
Q 004243 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR--------VDL--F 123 (766)
Q Consensus 57 v~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~--------~~~--~ 123 (766)
|+++. +|+.|.+||.+ |.+|++|+.||.+ .+.|+..+.|+| ++|+..+++.+++|+|.-. +.. +
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl--~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEEC--SSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeC--CCCCHHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 56666 89999999997 8999999999985 346777789999 9999999999999998532 211 7
Q ss_pred CHHHHHHHHHHhhhhCh
Q 004243 124 CPGIVLELLSFANRFCC 140 (766)
Q Consensus 124 ~~~~~~~~l~~a~~~~~ 140 (766)
+.+.+.+|+.+|+++++
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88899999999999875
No 230
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.70 E-value=2.5e-08 Score=83.35 Aligned_cols=69 Identities=12% Similarity=0.102 Sum_probs=66.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
++..+..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 456789999999999999999999999999999999999999999999999999999999999999985
No 231
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.70 E-value=1.4e-07 Score=83.92 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=78.8
Q ss_pred ceEEEE-cCeEEEeehHHHhcCCHHHHHHhcCCCc----cCCCCeEEecCCCCCHHHHHHHHHHhhcCC-----------
Q 004243 56 SVTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFV----ESKRKTIDFSHDGVSVEGLRAVEVYTRTSR----------- 119 (766)
Q Consensus 56 dv~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~~~~----e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~----------- 119 (766)
-|+|+. +|+.|.+++.+ |..|.+++.|+.+... +.....|.| ++|+..+++.|++|++.-.
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Ipl--pnV~s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPV--PNVRSSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEEC--TTCCHHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceee--CCCCHHHHHHHHHHHHHcccCCCccccccc
Confidence 567765 89999999998 7889999999975432 233478999 9999999999999997533
Q ss_pred --------------CCCCCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcC
Q 004243 120 --------------VDLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (766)
Q Consensus 120 --------------~~~~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~ 156 (766)
+. ++.+.+.+|+.+|++|+|.+|...|++.+...+.
T Consensus 85 ~~~~~~i~~wD~~Fl~-vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLK-VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp ---CCCCCHHHHHHTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHc-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 12 6778999999999999999999999999987776
No 232
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.69 E-value=1.8e-07 Score=99.77 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=106.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCc---hhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHH
Q 004243 482 RQSLLLLRLNCQKAAMRCLRLARNH-----SSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 553 (766)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 553 (766)
..+..+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++++....
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--------- 384 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL--------- 384 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---------
Confidence 3445567899999999999999875 3444 5678899999999999999999999999753111
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc-------CCh---HHHHHH
Q 004243 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-------KHT---RAHQGL 623 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~~~---~~~~~l 623 (766)
+++..... +..+++||.+|..+|++++|+..|++|+++ ++| +....+
T Consensus 385 -----lG~~Hp~~------------------a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 441 (490)
T 3n71_A 385 -----YHHNNAQL------------------GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR 441 (490)
T ss_dssp -----SCTTCHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred -----cCCCCHHH------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 11111100 456899999999999999999999999987 354 466889
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhc
Q 004243 624 ARVYYLKNELKAAYDEMTKLLEKA 647 (766)
Q Consensus 624 a~~~~~~g~~~~A~~~~~~~l~~~ 647 (766)
+.++..++.+++|...|.++.+..
T Consensus 442 ~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 442 MQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 233
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.68 E-value=2.2e-07 Score=81.07 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCCCCChHHHHHH
Q 004243 491 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQL 570 (766)
Q Consensus 491 g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 570 (766)
+++++|+..|+++.+.. ++.+. +|.+|...+..++|+++|+++.+.. +
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~-------------------------- 56 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACELN--S-------------------------- 56 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT--C--------------------------
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC--C--------------------------
Confidence 46788888888888775 33444 8888888888888888888887642 1
Q ss_pred HHHHHhchhhccccchhHHhhHHHHHH----hCCHHHHHHHHHHHHccCChHHHHHHHHHHHH----hccHHHHHHHHHH
Q 004243 571 LEEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLARVYYL----KNELKAAYDEMTK 642 (766)
Q Consensus 571 ~~~A~~~~~~~l~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 642 (766)
+.+++++|.+|.. .+++++|+.+|+++.+.+++.+++++|.+|.. .+++++|+.+|++
T Consensus 57 --------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 57 --------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp --------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 4567777888777 78888888888888888888888888888888 7888888888888
Q ss_pred HHHh
Q 004243 643 LLEK 646 (766)
Q Consensus 643 ~l~~ 646 (766)
+.+.
T Consensus 123 Aa~~ 126 (138)
T 1klx_A 123 ACRL 126 (138)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 8766
No 234
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.65 E-value=1.9e-07 Score=76.05 Aligned_cols=94 Identities=10% Similarity=-0.010 Sum_probs=77.3
Q ss_pred ceEEEEcCeEEEeehHHHhcCC-HHHHHHhcCCCc----cCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHH-HHH
Q 004243 56 SVTFCVRDKEISFVRNKIASLS-SPFKAMLYGGFV----ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVL 129 (766)
Q Consensus 56 dv~~~~~~~~~~~h~~~l~~~s-~~f~~~~~~~~~----e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~-~~~ 129 (766)
-|+|.|||+.|..++..|.... .+|..||++... ....+++-| |-+|..|+.||.|+.||++. ++.+ ...
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi---DRdp~~F~~IL~~lr~g~l~-~p~~~~~~ 82 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INKDLAEE 82 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE---CSCHHHHHHHHHHHHHSCCC-CCTTSCHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe---cCChHHHHHHHHHhCCCeeC-CCCCCCHH
Confidence 6789999999999999998765 478999987531 123457877 78899999999999999987 5443 246
Q ss_pred HHHHHhhhhChHhHHHHHHHHHHh
Q 004243 130 ELLSFANRFCCEEMKSACDAHLAS 153 (766)
Q Consensus 130 ~~l~~a~~~~~~~l~~~c~~~l~~ 153 (766)
.++.-|.+|+++.|.+.|++.+.+
T Consensus 83 ~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 83 GVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 789999999999999999998864
No 235
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.61 E-value=4.6e-07 Score=90.58 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=69.0
Q ss_pred HHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCh
Q 004243 673 ATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHM 748 (766)
Q Consensus 673 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 748 (766)
++..+|.++.++..+|..+...|++++|+..+++++.++|+...+..+|.++...|++++|++.|++|+.++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 3467789999999999999889999999999999999998866667889999999999999999999999999865
No 236
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.61 E-value=1.8e-07 Score=76.21 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-H-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHH--HHHHHHHHh
Q 004243 685 RYRAAVLMDDQKEVEAVEELSKAIAFKPDL-Q-MLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETL--DLYNRARDQ 760 (766)
Q Consensus 685 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~ 760 (766)
+.+|..+...|++++|+..|+++++.+|++ . .++.+|.++...|++++|+..|+++++++|+++.++ ..+.++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~ 83 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNF 83 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777766 3 444677777777777777777777777777777666 444444443
Q ss_pred h
Q 004243 761 A 761 (766)
Q Consensus 761 ~ 761 (766)
.
T Consensus 84 ~ 84 (99)
T 2kc7_A 84 Y 84 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 237
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.60 E-value=3.2e-07 Score=73.04 Aligned_cols=83 Identities=16% Similarity=0.063 Sum_probs=69.3
Q ss_pred CCCCchhHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHH
Q 004243 677 DPLRTYPYRYRAAVLMDDQK---EVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 752 (766)
Q Consensus 677 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 752 (766)
+|+++.++..+|.+++..++ .++|...++++++.+|++ ..++.+|..++..|++++|+..|+++++.+|.++....
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~ 81 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT 81 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 58889999999999976655 799999999999999999 56668999999999999999999999999999655544
Q ss_pred HHHHHHH
Q 004243 753 LYNRARD 759 (766)
Q Consensus 753 ~l~~~~~ 759 (766)
....+..
T Consensus 82 i~~~I~~ 88 (93)
T 3bee_A 82 IIESINK 88 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 238
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.57 E-value=2.6e-06 Score=85.21 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=70.3
Q ss_pred HHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHH
Q 004243 470 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFF 548 (766)
Q Consensus 470 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 548 (766)
+..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|....+.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 3567899999999999999999999999999999999975 67888999999999999999999999999999984443
No 239
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.54 E-value=3.4e-07 Score=74.54 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchh-hHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHH
Q 004243 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE-RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 547 (766)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~ 547 (766)
.+.+|..+...|++++|+..++++++.+|+++. +++.+|.++...|++++|+..|+++++++|++ .++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 357889999999999999999999999999999 99999999999999999999999999999998 554
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.53 E-value=4.5e-06 Score=79.74 Aligned_cols=82 Identities=7% Similarity=-0.013 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCC--ChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCc-hhhHHHHHHHHHH-CCCHHHHHHH
Q 004243 463 LAVINQMLINDPG--KSFLRFRQSLLLLRL-----NCQKAAMRCLRLARNHSSSE-HERLVYEGWILYD-TGHREEALSR 533 (766)
Q Consensus 463 l~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~ 533 (766)
...++++++++|+ +..+|..+|.+|... |+.++|.++|+++++++|+. ...++.+|..+.. .|++++|.+.
T Consensus 183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~ 262 (301)
T 3u64_A 183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA 262 (301)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Confidence 4567999999999 677999999999995 99999999999999999975 9999999999988 5999999999
Q ss_pred HHHHHccccch
Q 004243 534 AEKSISIERTF 544 (766)
Q Consensus 534 ~~~al~~~p~~ 544 (766)
++++++.+|..
T Consensus 263 L~kAL~a~p~~ 273 (301)
T 3u64_A 263 LDRALAIDPES 273 (301)
T ss_dssp HHHHHHCCGGG
T ss_pred HHHHHcCCCCC
Confidence 99999988773
No 241
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.47 E-value=6.7e-07 Score=71.21 Aligned_cols=72 Identities=10% Similarity=-0.092 Sum_probs=67.9
Q ss_pred CCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 473 DPGKSFLRFRQSLLLLRLNC---QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..+++.|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999987666 7999999999999999999999999999999999999999999999999875
No 242
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.42 E-value=1.3e-06 Score=71.72 Aligned_cols=84 Identities=15% Similarity=0.044 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHH
Q 004243 681 TYPYRYRAAVLMDDQKEVEAVEELSKAIAFK-------PDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 752 (766)
Q Consensus 681 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 752 (766)
+.-.+.+|..++..|+|..|+.+|++|++.. +.. ..+..+|.++.++|+++.|+..++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4567889999999999999999999999862 122 45558999999999999999999999999999999988
Q ss_pred HHHHHHHhhhhh
Q 004243 753 LYNRARDQASHQ 764 (766)
Q Consensus 753 ~l~~~~~~~~~~ 764 (766)
.+.-++..+.++
T Consensus 85 n~~~~~~~~~~~ 96 (104)
T 2v5f_A 85 NLKYFEYIMAKE 96 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhc
Confidence 877766665543
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.37 E-value=3.8e-06 Score=69.34 Aligned_cols=101 Identities=8% Similarity=0.027 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHH---HHHHHHHHHhcC-CCh--HHHHHHHHHHHHcCCHHHHHHHH
Q 004243 664 EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVE---AVEELSKAIAFK-PDL--QMLHLRAAFYESIGDLTSAIRDS 737 (766)
Q Consensus 664 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p~~--~~~~~la~~~~~~g~~~~A~~~~ 737 (766)
..+...|.+....++....+.+++|+++.+..+... ++..++..+..+ |.. ..+|.+|..+.+.|+|++|+.++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455666777777777889999999999999988777 999999999887 533 67889999999999999999999
Q ss_pred HHHHccCCCChhHHHHHHHHHHhhhhh
Q 004243 738 QAALCLDPNHMETLDLYNRARDQASHQ 764 (766)
Q Consensus 738 ~~al~~~p~~~~~~~~l~~~~~~~~~~ 764 (766)
+.+|+++|++..+..+...++..+.+.
T Consensus 98 ~~lL~~eP~n~QA~~Lk~~i~~~i~kd 124 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKELERLIDKAMKKD 124 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999888765
No 244
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.34 E-value=1e-06 Score=92.42 Aligned_cols=78 Identities=12% Similarity=-0.008 Sum_probs=67.2
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCC
Q 004243 681 TYPYRYRAAVLMDDQKEVEAVEELSKAIAF-----KPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCL-----DPN 746 (766)
Q Consensus 681 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~ 746 (766)
...+.++|.+|..+|+|++|+.++++++++ -|+++ .+.++|.+|..+|++++|+.+|++|+++ .|+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~ 419 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 567889999999999999999999999876 44442 3558999999999999999999999986 799
Q ss_pred ChhHHHHHHHHH
Q 004243 747 HMETLDLYNRAR 758 (766)
Q Consensus 747 ~~~~~~~l~~~~ 758 (766)
||.+......++
T Consensus 420 Hp~~~~l~~~l~ 431 (433)
T 3qww_A 420 HPYISEIKQEIE 431 (433)
T ss_dssp CHHHHHHHHHHH
T ss_pred ChHHHHHHHHHh
Confidence 999888776654
No 245
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.31 E-value=1.4e-06 Score=71.13 Aligned_cols=82 Identities=30% Similarity=0.399 Sum_probs=63.5
Q ss_pred ceEEEE-cCeEEEeehHHHhcCCHHHHHHhcC--CCccCCCCeEEecCCCCCHHHHHHHHHHhhcCC--------CCC--
Q 004243 56 SVTFCV-RDKEISFVRNKIASLSSPFKAMLYG--GFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSR--------VDL-- 122 (766)
Q Consensus 56 dv~~~~-~~~~~~~h~~~l~~~s~~f~~~~~~--~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~--------~~~-- 122 (766)
-|+++. +|..|.++|.+ |..|..++.|+.+ .+.|+..+.|.| ++|+..+++.|++|++.-. +..
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~Ipl--pnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNF--REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEEC--SSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeC--CCCCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 577774 89999999995 6899999999984 456666678999 9999999999999997422 211
Q ss_pred CCHHHHHHHHHHhhhhCh
Q 004243 123 FCPGIVLELLSFANRFCC 140 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~ 140 (766)
++.+.+++|+.+|+++++
T Consensus 95 vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 IAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCc
Confidence 889999999999999875
No 246
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=4e-06 Score=72.09 Aligned_cols=84 Identities=13% Similarity=0.037 Sum_probs=75.4
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 465 VINQMLINDPGKSFLRFRQSLLLLRLN---CQKAAMRCLRLARNHS-S-SEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 465 ~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++..++.+ | ++.+.++++|..+++.|+|++|+++++++++
T Consensus 20 ~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 20 KFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 456777788899999999999999988 6779999999999998 7 5689999999999999999999999999999
Q ss_pred cccch-HHHH
Q 004243 540 IERTF-EAFF 548 (766)
Q Consensus 540 ~~p~~-~~~~ 548 (766)
++|++ .+..
T Consensus 100 ieP~n~QA~~ 109 (152)
T 1pc2_A 100 TEPQNNQAKE 109 (152)
T ss_dssp HCTTCHHHHH
T ss_pred cCCCCHHHHH
Confidence 99998 4443
No 247
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=7.8e-07 Score=72.52 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=45.4
Q ss_pred HhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhhhcCccccccc
Q 004243 152 ASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (766)
Q Consensus 152 ~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~~~~f~~l 200 (766)
.+.++ ++||+.++.+|+.|+++.|.+.|.+||.+||.++.++++|.+|
T Consensus 5 ~~~L~-~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L 52 (105)
T 2eqx_A 5 SSGVQ-VGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHL 52 (105)
T ss_dssp CCCCC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHS
T ss_pred hccCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhC
Confidence 35678 9999999999999999999999999999999999999999987
No 248
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.09 E-value=1.6e-05 Score=83.58 Aligned_cols=79 Identities=10% Similarity=-0.029 Sum_probs=65.8
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCC
Q 004243 681 TYPYRYRAAVLMDDQKEVEAVEELSKAIAF-----KPDLQ----MLHLRAAFYESIGDLTSAIRDSQAALCL-----DPN 746 (766)
Q Consensus 681 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~ 746 (766)
...+.++|.+|..+|+|++|+.++++++++ -|+++ .++++|.+|..+|++++|+.+|++|+++ .|+
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 567889999999999999999999999876 34443 3458999999999999999999999986 799
Q ss_pred ChhHHHHHHHHHH
Q 004243 747 HMETLDLYNRARD 759 (766)
Q Consensus 747 ~~~~~~~l~~~~~ 759 (766)
||.+...+..+..
T Consensus 409 Hp~~~~~~~~l~~ 421 (429)
T 3qwp_A 409 HSLIEDLILLLEE 421 (429)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 9888766544443
No 249
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.07 E-value=2.7e-05 Score=81.75 Aligned_cols=110 Identities=11% Similarity=0.003 Sum_probs=85.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHcc-------CCh---HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcC
Q 004243 593 SIYVECGKLDQAENCYINALDI-------KHT---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSD 662 (766)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~-------~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 662 (766)
.-+..+|++++|+..+++++++ +++ .++.++|.+|..+|++++|+..++++++.
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i---------------- 358 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP---------------- 358 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 3455789999999999999987 233 47899999999999999999999999866
Q ss_pred HHHHHHHHHHHH-hcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCChHHHH----HHHHHHH
Q 004243 663 REMAKNDLNMAT-QLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF-----KPDLQMLH----LRAAFYE 725 (766)
Q Consensus 663 ~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~----~la~~~~ 725 (766)
+++.+ ...|.....++++|.+|..+|++++|+.+|++|+++ -|+++... +++.+..
T Consensus 359 -------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 359 -------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp -------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred -------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 22222 233444677899999999999999999999999876 56664332 4555443
No 250
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.06 E-value=8.9e-06 Score=85.21 Aligned_cols=98 Identities=10% Similarity=0.014 Sum_probs=79.1
Q ss_pred HhCCHHHHHHHHHHHHcc-------CCh---HHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHH
Q 004243 597 ECGKLDQAENCYINALDI-------KHT---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMA 666 (766)
Q Consensus 597 ~~g~~~~A~~~~~~al~~-------~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A 666 (766)
..|+|++|+..+++++++ +++ .++.++|.+|..+|++++|+..+++++++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-------------------- 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-------------------- 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------------------
Confidence 458999999999999986 244 47899999999999999999999999865
Q ss_pred HHHHHHHH-hcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCChHHH
Q 004243 667 KNDLNMAT-QLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF-----KPDLQML 717 (766)
Q Consensus 667 ~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 717 (766)
+++.+ ...|+.+..+.++|.+|..+|++++|+.+|++|+++ -|+++..
T Consensus 370 ---~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 370 ---YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp ---HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred ---HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 22222 223444677899999999999999999999999876 5666543
No 251
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.06 E-value=2.9e-05 Score=63.49 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=66.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHH
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 547 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~ 547 (766)
++.-.+.+|..++..|+|..|+..|+.|++.. +..+.++..+|.++.+.|++++|+..++++++++|++ .+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45567899999999999999999999998853 3457889999999999999999999999999999999 655
Q ss_pred HHHH
Q 004243 548 FLKA 551 (766)
Q Consensus 548 ~~~~ 551 (766)
.++.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5554
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.85 E-value=0.00035 Score=58.45 Aligned_cols=87 Identities=13% Similarity=0.002 Sum_probs=77.7
Q ss_pred CCCchhHHHHHHHHHhCCCH---HHHHHHHHHHHhcCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHH
Q 004243 678 PLRTYPYRYRAAVLMDDQKE---VEAVEELSKAIAFKPDL--QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 752 (766)
Q Consensus 678 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 752 (766)
.-.+.+.+++|+++.+..+. .+++..++..+...|.. ..+|.+|..+.++|+|++|.++.+..|+++|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45688999999999998655 57999999999988865 77889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhh
Q 004243 753 LYNRARDQASHQ 764 (766)
Q Consensus 753 ~l~~~~~~~~~~ 764 (766)
+...++..+++.
T Consensus 116 Lk~~Ie~~i~kd 127 (144)
T 1y8m_A 116 LKSMVEDKIQKE 127 (144)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999888765
No 253
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.84 E-value=6.3e-05 Score=67.39 Aligned_cols=96 Identities=9% Similarity=-0.016 Sum_probs=75.0
Q ss_pred CceEEEEcCeEEEeehHHHhcCC-HHHHHHhcCCC--c--cCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHH-HH
Q 004243 55 DSVTFCVRDKEISFVRNKIASLS-SPFKAMLYGGF--V--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IV 128 (766)
Q Consensus 55 ~dv~~~~~~~~~~~h~~~l~~~s-~~f~~~~~~~~--~--e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~-~~ 128 (766)
.=|+|.|||+.|...+..|.... .+|..||++.. . ....+++-| |-+|..|+.||.|+-||++. ++.+ ..
T Consensus 12 ~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI---DRDP~~F~~ILnyLRtG~L~-lP~~~~~ 87 (202)
T 3drx_A 12 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI---DRDPTYFGPVLNYLRHGKLV-INKDLAE 87 (202)
T ss_dssp CEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE---CSCSTTHHHHHHHHHHSCCC-CCTTSCH
T ss_pred CEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe---cCChHHHHHHHHHhcCCccC-CCCCCCH
Confidence 36788999999999999997654 37899998752 1 123457878 67899999999999999998 5433 23
Q ss_pred HHHHHHhhhhChHhHHHHHHHHHHhh
Q 004243 129 LELLSFANRFCCEEMKSACDAHLASL 154 (766)
Q Consensus 129 ~~~l~~a~~~~~~~l~~~c~~~l~~~ 154 (766)
..++.-|.+|+|+.|.+.|.+.|.+.
T Consensus 88 ~~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 88 EGVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 56888899999999999998888643
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.83 E-value=0.00011 Score=60.53 Aligned_cols=85 Identities=13% Similarity=0.007 Sum_probs=76.4
Q ss_pred CchhHHHHHHHHHhCCCH---HHHHHHHHHHHhcCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHH
Q 004243 680 RTYPYRYRAAVLMDDQKE---VEAVEELSKAIAFKPDL--QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLY 754 (766)
Q Consensus 680 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 754 (766)
.+.+.+++|+++.+..+. .+++..++..+..+|.. ..+|.+|..+.++|+|++|.++.+.+|++.|++..+..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 478899999999988655 57999999999988855 7788999999999999999999999999999999999999
Q ss_pred HHHHHhhhhh
Q 004243 755 NRARDQASHQ 764 (766)
Q Consensus 755 ~~~~~~~~~~ 764 (766)
..++..+++.
T Consensus 119 ~~Ie~ki~kd 128 (134)
T 3o48_A 119 SMVEDKIQKE 128 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 255
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.81 E-value=0.002 Score=69.14 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=80.7
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcC
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSD 662 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 662 (766)
.+|..+...|.+.|++++|...|++..+.+ +..+|..+-..+.+.|+.++|.+.|+++.+..
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G--------------- 170 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE--------------- 170 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC---------------
Confidence 567888888888999999999998887763 44577888888888888888888888876542
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCChHHHHHH
Q 004243 663 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF--KPDLQMLHLR 720 (766)
Q Consensus 663 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l 720 (766)
..| +...|..+-..+.+.|+.++|.+.+++.-+. .|+...+..+
T Consensus 171 -------------~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 171 -------------VVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp -------------CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred -------------CCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 223 3456777778888999999999999887554 6776655543
No 256
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.79 E-value=0.00089 Score=71.90 Aligned_cols=161 Identities=14% Similarity=0.067 Sum_probs=125.6
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhc-cCCHH
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLK---------NELKAAYDEMTKLLEKA-QYSAS 652 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~-p~~~~ 652 (766)
..+..+-..+.+.|+.++|++.|+++.+.+ +..+|..+-.++... +..++|.+.|+++.... +.+..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 345666678889999999999999998773 335666666666543 34788999999987654 22333
Q ss_pred HHHH----HhhhcCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCChHHHHHHHHHH
Q 004243 653 AFEK----RSEYSDREMAKNDLNMATQL--DPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF--KPDLQMLHLRAAFY 724 (766)
Q Consensus 653 ~~~~----~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~ 724 (766)
.|.. .+..|+.++|...|++..+. .| +...|..+-..|.+.|+.++|.+.|++..+. .|+...+..+-..+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3333 33779999999999998764 34 5678888889999999999999999998765 78888888899999
Q ss_pred HHcCCHHHHHHHHHHHHc--cCCCC
Q 004243 725 ESIGDLTSAIRDSQAALC--LDPNH 747 (766)
Q Consensus 725 ~~~g~~~~A~~~~~~al~--~~p~~ 747 (766)
.+.|+.++|.+.+++.-+ ..|+.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 999999999999998765 45653
No 257
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.63 E-value=0.00046 Score=56.91 Aligned_cols=84 Identities=13% Similarity=-0.035 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH---HHHHHHHHHccC-C--CHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004243 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRA---AISEIDRIIVFK-L--SVDCLELRAWLFIAADDYESALRDTLA 410 (766)
Q Consensus 337 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~---A~~~~~~al~~~-~--~~~~~~~~a~~~~~~g~~~~A~~~~~~ 410 (766)
+...|.+....++.+..+.++.|.++.+..+... ++..++..++.. | .-+.+|.+|..++++|+|++|.+.++.
T Consensus 20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~ 99 (126)
T 1nzn_A 20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 99 (126)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5667777888888899999999999999988777 999999999877 4 445677799999999999999999999
Q ss_pred HHhccCCccc
Q 004243 411 LLALESNYMM 420 (766)
Q Consensus 411 al~~~p~~~~ 420 (766)
+|+..|++..
T Consensus 100 lL~~eP~n~Q 109 (126)
T 1nzn_A 100 LLQTEPQNNQ 109 (126)
T ss_dssp HHHHCTTCHH
T ss_pred HHHhCCCCHH
Confidence 9999999984
No 258
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.26 E-value=0.0034 Score=52.85 Aligned_cols=116 Identities=13% Similarity=-0.056 Sum_probs=72.2
Q ss_pred ccCChHHHHHHHHHHHHhccH------HHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHH
Q 004243 613 DIKHTRAHQGLARVYYLKNEL------KAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRY 686 (766)
Q Consensus 613 ~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 686 (766)
.-++++.|..........|+. +.-++.|++++...|..... ........|..
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~----------------------~wrrYI~LWIr 66 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYG----------------------QNESFARIQVR 66 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGT----------------------TCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccc----------------------cHHHHHHHHHH
Confidence 335677777777777777777 66667777777665543110 00011344555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCChhHH
Q 004243 687 RAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAALCLDPNHMETL 751 (766)
Q Consensus 687 la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 751 (766)
.|.. ...++.++|...|+.++.+.... ..|...|..-.++|+...|.+.+.+++.+.|...+..
T Consensus 67 YA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 67 FAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 5533 45577777777777777665555 3333567777777777777777777777777755543
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.03 E-value=0.0035 Score=54.12 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---------hhHHHHHHHHHHCCCHHHHHHHHHHHHccccch---
Q 004243 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---------ERLVYEGWILYDTGHREEALSRAEKSISIERTF--- 544 (766)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--- 544 (766)
..+++.-...+...|.|+.|+-....++....+++ .++..+|.+++..|+|..|...|+++++....-
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566777788889999999999988766543333 378899999999999999999999998754221
Q ss_pred -HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc-CChHHHHH
Q 004243 545 -EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI-KHTRAHQG 622 (766)
Q Consensus 545 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~ 622 (766)
......+ ... ....... .....+..+.++.||...|++++|+..++..-.. ..+.....
T Consensus 100 ~s~~~~~~----~~s-----------s~p~s~~----~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~ 160 (167)
T 3ffl_A 100 SKVRPSTG----NSA-----------STPQSQC----LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINML 160 (167)
T ss_dssp --------------------------------C----CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHH
T ss_pred CCcccccc----ccC-----------CCccccc----ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHH
Confidence 0000000 000 0000000 0012467889999999999999999998876444 67777777
Q ss_pred HHHHH
Q 004243 623 LARVY 627 (766)
Q Consensus 623 la~~~ 627 (766)
||++|
T Consensus 161 LakLy 165 (167)
T 3ffl_A 161 LANLY 165 (167)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 77765
No 260
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.00 E-value=0.0061 Score=51.32 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=31.6
Q ss_pred cCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH
Q 004243 661 SDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 718 (766)
Q Consensus 661 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 718 (766)
++.++|.+.|+.++.+....+.+|...|..-.++|+...|.+.+.+++...|.+....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 4555555555555555444455555555555555555555555555555555554333
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.92 E-value=0.0075 Score=52.08 Aligned_cols=131 Identities=11% Similarity=0.006 Sum_probs=81.1
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHcc--CCh---------HHHHHHHHHHHHhccHHHHHHHHHHHHHhcc---CCH
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDI--KHT---------RAHQGLARVYYLKNELKAAYDEMTKLLEKAQ---YSA 651 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~ 651 (766)
.++..-...+...|.|+.|+-....++.. +++ .++..+|.+++..++|..|...|++++.... ...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566667788899999999999987776 222 3789999999999999999999999986532 111
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004243 652 SAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFY 724 (766)
Q Consensus 652 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~ 724 (766)
......+... ....... .+...++.+.+|.|+.+.|++++|+..++.+-...-+......+|.+|
T Consensus 101 s~~~~~~~~s-------s~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSA-------STPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred CccccccccC-------CCccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 1100000000 0000001 123346777788888888888888888765433333334444566554
No 262
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=96.86 E-value=0.00033 Score=57.27 Aligned_cols=85 Identities=7% Similarity=0.032 Sum_probs=64.7
Q ss_pred ceEEEEcCeEEEeehHHHhcCCH-HHHHHhcCCC-ccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHH-HHHHHH
Q 004243 56 SVTFCVRDKEISFVRNKIASLSS-PFKAMLYGGF-VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLELL 132 (766)
Q Consensus 56 dv~~~~~~~~~~~h~~~l~~~s~-~f~~~~~~~~-~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~-~~~~~l 132 (766)
=|+|.|||+.|...+..|..... .+..||++.. .....+++-| |-+|..|..||.|+-||++. ++.+ .+..++
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnylR~G~l~-~p~~~~~~~~~ 81 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF---DRHPGVFAQIINYYRSGKLH-YPTDVCGPLFE 81 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE---CSCTTTHHHHHHHHHHSCBC-CCSSSCHHHHH
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE---ecChHHHHHHHHHhcCCCCC-CCCcccHHHHH
Confidence 47899999999999999976533 3566665432 2234567888 67899999999999999997 4432 356788
Q ss_pred HHhhhhChHhHH
Q 004243 133 SFANRFCCEEMK 144 (766)
Q Consensus 133 ~~a~~~~~~~l~ 144 (766)
.-|.+|+|+...
T Consensus 82 ~Ea~fy~i~~~~ 93 (115)
T 3kvt_A 82 EELEFWGLDSNQ 93 (115)
T ss_dssp HHHHHHTCCGGG
T ss_pred HHHHHhCCChHH
Confidence 889999998754
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.62 E-value=0.032 Score=46.70 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=63.3
Q ss_pred CCChhHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCC-CchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 474 PGKSFLRFRQSLLLLRLNCQ---KAAMRCLRLARNHSS-SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
+..+...++.|.++.+..+. .+++..++..+...| ..-+.++.+|..++++|+|++|.++.+..++..|++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 45778899999999987764 579999999998888 457889999999999999999999999999999998
No 264
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=96.60 E-value=0.002 Score=53.42 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=65.9
Q ss_pred CceEEEEcCeEEEeehHHHhcCCHHHHHHhcCC----CccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHH-HHH
Q 004243 55 DSVTFCVRDKEISFVRNKIASLSSPFKAMLYGG----FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVL 129 (766)
Q Consensus 55 ~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~----~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~-~~~ 129 (766)
.-|+|.|||+.|..-+..|.... .+||... +.....+++-| |=+|..|+.||.|+-||++. ++.+ .+.
T Consensus 13 ~~V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~ 85 (124)
T 1s1g_A 13 ELIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECIS 85 (124)
T ss_dssp CEEEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEE---CSCHHHHHHHHHHHHHSCBC-CCTTSCHH
T ss_pred CEEEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEE---cCChHHHHHHHHHHhcCCCC-CCCCcCHH
Confidence 36889999999999999996542 2455431 11223457878 66899999999999999997 5443 367
Q ss_pred HHHHHhhhhChHhHH-HH-HHHHHH
Q 004243 130 ELLSFANRFCCEEMK-SA-CDAHLA 152 (766)
Q Consensus 130 ~~l~~a~~~~~~~l~-~~-c~~~l~ 152 (766)
.++.-|.+|+|+.+. .. |.....
T Consensus 86 ~l~~Ea~fy~i~~l~l~~cC~~~~~ 110 (124)
T 1s1g_A 86 AYDDELAFYGILPEIIGDCCYEEYK 110 (124)
T ss_dssp HHHHHHHHTTCCGGGBCHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHH
Confidence 889999999999873 44 444433
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.44 E-value=0.023 Score=46.96 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=61.6
Q ss_pred ChhHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 476 KSFLRFRQSLLLLRLNCQ---KAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.+.+.++.|.++.+..+. .+++..++..++.+|. ..+.++.+|..+++.|+|++|.++.+.++++.|++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 567889999999887654 5799999999988884 57889999999999999999999999999999998
No 266
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=96.41 E-value=0.0018 Score=51.26 Aligned_cols=84 Identities=8% Similarity=0.006 Sum_probs=60.3
Q ss_pred eEEEEcCeEEEeehHHHhcCCH-HHHHHhcC-CCccCCCCeEEecCCCCCHHHHHHHHHHhhc-CCCCCCCHH-HHHHHH
Q 004243 57 VTFCVRDKEISFVRNKIASLSS-PFKAMLYG-GFVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPG-IVLELL 132 (766)
Q Consensus 57 v~~~~~~~~~~~h~~~l~~~s~-~f~~~~~~-~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt-~~~~~~~~~-~~~~~l 132 (766)
|+|.|||+.|...+..|...-. .+..|+++ .......+++-| |-+|..|+.||.|+-| |++. ++.+ .+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi---DRdp~~F~~ILnflR~~G~l~-~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF---DRNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE---CSCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE---cCChHHHHHHHHHHhcCCccc-CCCCCCHHHHH
Confidence 7899999999999999964321 22333321 111234567888 6689999999999999 8987 4332 357788
Q ss_pred HHhhhhChHhHH
Q 004243 133 SFANRFCCEEMK 144 (766)
Q Consensus 133 ~~a~~~~~~~l~ 144 (766)
.-|..|+|+.+.
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999998644
No 267
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=96.37 E-value=0.0011 Score=53.18 Aligned_cols=80 Identities=9% Similarity=0.066 Sum_probs=60.5
Q ss_pred eEEEEcCeEEEeehHHHhcCCHHHHHHhcCCC----ccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHH-HHHHH
Q 004243 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGF----VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVLEL 131 (766)
Q Consensus 57 v~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~----~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~-~~~~~ 131 (766)
|+|.|||+.|...+..|..... +||...- .....+++-| |=+|..|+.||.|+-||++. ++.+ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi---DRdp~~F~~ILnflR~g~l~-~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF---DRDPDIFRHILNFYRTGKLH-YPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE---CSCTTTHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE---eCCcHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 7899999999999999975432 3554311 1123457778 66899999999999999987 5443 36778
Q ss_pred HHHhhhhChHhH
Q 004243 132 LSFANRFCCEEM 143 (766)
Q Consensus 132 l~~a~~~~~~~l 143 (766)
+.-|+.|+|+.+
T Consensus 75 ~~Ea~fy~i~~l 86 (105)
T 1nn7_A 75 DEELAFFGLIPE 86 (105)
T ss_dssp HHHHHHHTCCSC
T ss_pred HHHHHHcCCCHH
Confidence 888999999876
No 268
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=96.17 E-value=0.0029 Score=53.61 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=62.5
Q ss_pred CceEEEEcCeEEEeehHHHhcCCHHHHHHhcCCC----ccCCCCeEEecCCCCCHHHHHHHHHHhhcCCCCCCCHH-HHH
Q 004243 55 DSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGF----VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG-IVL 129 (766)
Q Consensus 55 ~dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~~~----~e~~~~~i~~~~~~~~~~~~~~~l~~~yt~~~~~~~~~-~~~ 129 (766)
.-|+|.|||+.|...+..|.... .+||...- .....+++-| |=++..|+.||.|+-||++. ++.+ .+.
T Consensus 35 ~~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~~~~~~~~g~yFi---DRdp~~F~~ILnflR~G~l~-~p~~~~~~ 107 (140)
T 2nz0_B 35 ELIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLH-YPRYECIS 107 (140)
T ss_dssp CEEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGGGSEETTTTEEEE---CSCHHHHHHHHHHHHHSSBC-CCTTSCHH
T ss_pred CEEEEEECCEEEEeeHHHHhcCC---CeeecccCCcccccCCCCeEEE---eCCcHHHHHHHHHHhcCCcC-CCCCcCHH
Confidence 46889999999999999997532 34554411 1123457888 66899999999999999997 5433 367
Q ss_pred HHHHHhhhhChHhH
Q 004243 130 ELLSFANRFCCEEM 143 (766)
Q Consensus 130 ~~l~~a~~~~~~~l 143 (766)
.++.-|++|+|+.+
T Consensus 108 ~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 108 AYDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHHTCCGG
T ss_pred HHHHHHHHcCCChH
Confidence 88889999999987
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.83 E-value=0.97 Score=45.95 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=48.5
Q ss_pred HHhhHHHHHHhCCHHHHHHHHHHHHcc----CCh----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 004243 588 LNNLGSIYVECGKLDQAENCYINALDI----KHT----RAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (766)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 646 (766)
-..+|..|...|+|.+|...+.+..+. ++. +.+.....+|...+++.++...+.++...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 457899999999999999999888775 222 46777888899999999999999888654
No 270
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.54 E-value=1.1 Score=51.25 Aligned_cols=44 Identities=20% Similarity=0.115 Sum_probs=24.9
Q ss_pred HHHhcCCHHHHHH-HHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHH
Q 004243 486 LLLRLNCQKAAMR-CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 534 (766)
Q Consensus 486 ~~~~~g~~~~A~~-~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 534 (766)
.....+++++|.+ .+ ..-|+ ..........+...|.+++|++..
T Consensus 608 ~~~~~~~~~~a~~~~l----~~i~~-~~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVL----PNVEG-KDSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHHHTTCHHHHHHHTG----GGCCC-HHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHHHhCCHHHHHHHHH----hcCCc-hHHHHHHHHHHHhCCChHHheecC
Confidence 3345688888766 33 11110 112255566677788888877554
No 271
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.12 E-value=0.77 Score=52.61 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHHHhcCCC
Q 004243 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLD 560 (766)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l~~~~~~ 560 (766)
......+...|.+++|++..+ ++... -......|++++|.+..+.. +
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~~-----~----------------- 679 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTDE-----S----------------- 679 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTTC-----C-----------------
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHhh-----C-----------------
Confidence 455566777888888776542 22222 23346678888887765321 1
Q ss_pred CCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHH
Q 004243 561 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINAL 612 (766)
Q Consensus 561 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 612 (766)
....|..+|..+...|+++.|+.+|.++-
T Consensus 680 -----------------------~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 680 -----------------------AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -----------------------cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 13457888888888888888888887753
No 272
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.02 E-value=1.5 Score=37.58 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=69.3
Q ss_pred chhHHHHHHHHhccCcHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH--ccC--C------------
Q 004243 320 PTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII--VFK--L------------ 383 (766)
Q Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~--~------------ 383 (766)
++.-+..+..++-.|++....|- -..-+-..+.+..+.||...++|..|+..+++.+ +.+ |
T Consensus 33 ~eY~lL~~I~LyyngEY~R~Lf~---L~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 33 PEYRMLMSIVLYLNGEYTRALFH---LHKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp -CTHHHHHHHHHHTTCHHHHHHH---HHTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred hHHHhhhhhhhhhcchHhHHHHH---HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 35555666677777776333221 1223446778889999999999999999999998 222 2
Q ss_pred --CHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccCCcc
Q 004243 384 --SVDCLEL-RAWLFIAADDYESALRDTLALLALESNYM 419 (766)
Q Consensus 384 --~~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 419 (766)
+.+..+. +|.++.+.|+.++|+..|.......|-.+
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 1122333 99999999999999999999988776554
No 273
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.69 E-value=2.1 Score=37.64 Aligned_cols=56 Identities=14% Similarity=0.009 Sum_probs=43.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 476 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
++...+.++ ...|+++.|.+..+.. ++...|..+|......|+++-|...|.++-.
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 344444443 5679999999887654 5677899999999999999999999987654
No 274
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.50 E-value=2.1 Score=36.75 Aligned_cols=62 Identities=18% Similarity=0.107 Sum_probs=48.5
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
-|..++....++..+.-.|.|..|+-.+.. -+...+.+..+.||...++|..|+..++..+.
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~ 90 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILE 90 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667888889999999999998876643 34567788889999999999999999999983
No 275
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.69 Score=51.33 Aligned_cols=60 Identities=15% Similarity=-0.026 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHH
Q 004243 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 537 (766)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (766)
..+...+..+...|+++-|++..++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 456667888889999999999999999999999999999999999999999999887765
No 276
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.32 Score=53.96 Aligned_cols=58 Identities=9% Similarity=-0.043 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 683 PYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL-QMLHLRAAFYESIGDLTSAIRDSQAA 740 (766)
Q Consensus 683 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~~~~a 740 (766)
.+..-+..+...|+++-|++..++|+...|+. ..|+.++.+|..+|+++.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44445666777788888888888888888876 77778888888888888888776654
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.91 E-value=2.2 Score=43.36 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC--C----chhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHH
Q 004243 481 FRQSLLLLRLNCQKAAMRCLRLARNHSS--S----EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 554 (766)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~a~~~~p--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l 554 (766)
..+|..|+..|+|.+|.+.+.+..+.-. + -.+++.....+|...|++.++...+.++......-
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai---------- 172 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI---------- 172 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS----------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC----------
Confidence 3789999999999999999987765321 1 14566677889999999999999999887542100
Q ss_pred HhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHH-HhCCHHHHHHHHHHHHcc
Q 004243 555 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYV-ECGKLDQAENCYINALDI 614 (766)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 614 (766)
...| .. .+.....-|..+. ..++|..|...|-++.+.
T Consensus 173 ---~~~p----~i----------------~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 173 ---YCPP----KV----------------QGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp ---CCCH----HH----------------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ---CCCH----HH----------------HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 0000 00 0334556688888 899999999999888643
No 278
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.78 E-value=1.6 Score=41.03 Aligned_cols=59 Identities=19% Similarity=0.004 Sum_probs=55.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch
Q 004243 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (766)
Q Consensus 486 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (766)
.+++.|+.++|++.....++.+|.++.....+..++.-.|+++.|.+-++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45678999999999999999999999999999999999999999999999999999997
No 279
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.67 E-value=1.2 Score=45.61 Aligned_cols=124 Identities=12% Similarity=0.011 Sum_probs=76.8
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCH-HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHH
Q 004243 624 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDR-EMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVE 702 (766)
Q Consensus 624 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 702 (766)
|......|+.+.|...+.+++.+.....-. ... ...+ ......++.. ...+...++..+...|++.+|+.
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-DFQFVEPFATALVED------KVLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHH
Confidence 333445688999999999998775322100 000 0000 1111111111 12344566778888899999999
Q ss_pred HHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHH-------ccCCCChhHHHHHHHH
Q 004243 703 ELSKAIAFKPDLQMLH-LRAAFYESIGDLTSAIRDSQAAL-------CLDPNHMETLDLYNRA 757 (766)
Q Consensus 703 ~~~~al~~~p~~~~~~-~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~l~~~ 757 (766)
.+.+++..+|-++.++ .+..++...|+..+|++.|++.- .++|. ++...++.++
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~-~~l~~l~~~i 254 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERI 254 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHH
Confidence 9999999999886544 77888888999999988887653 34665 4554444443
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.60 E-value=14 Score=40.22 Aligned_cols=54 Identities=9% Similarity=-0.051 Sum_probs=34.7
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCC
Q 004243 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 526 (766)
Q Consensus 473 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 526 (766)
.|.+....+..+......|+..+|......+.......+.....+-..+...|.
T Consensus 98 ~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC
Confidence 366777777777788888888777777777666555445554444444444443
No 281
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.10 E-value=1.5 Score=41.29 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=49.1
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccCCccc
Q 004243 361 AKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESALRDTLALLALESNYMM 420 (766)
Q Consensus 361 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 420 (766)
.+++.|+.++|+......++.+|....... +.+++.-.|+++.|.+.++.+.+++|+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 456778888899998888888886665555 888888889999999999988888888774
No 282
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.58 E-value=2.3 Score=43.49 Aligned_cols=61 Identities=8% Similarity=-0.052 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
+...++..+...|++.+|+..+..++..+|-+..++..+-.++...|+..+|++.|+++-+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456778888999999999999999999999999999999999999999999999988764
No 283
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.45 E-value=1.2 Score=46.98 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 004243 663 REMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAF 710 (766)
Q Consensus 663 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 710 (766)
...|..+|.+|..+.|++..++..+|.+....|+.-+|+-+|-+++..
T Consensus 168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 355555555555555555555555555555555555555555555544
No 284
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.64 E-value=7.9 Score=40.28 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=48.3
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHcc----C----ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDI----K----HTRAHQGLARVYYLKNELKAAYDEMTKLL 644 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l 644 (766)
......|+.+|...|++.+|...+.....- . -.+.+....+++...+++..|...++++.
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345678899999999999999999887543 1 13577888889999999999999888874
No 285
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.77 E-value=7.2 Score=34.21 Aligned_cols=100 Identities=11% Similarity=-0.036 Sum_probs=58.8
Q ss_pred HHhCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHh
Q 004243 596 VECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQ 675 (766)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~ 675 (766)
...|+++.|.+..+.. +....|..+|......|+++-|..+|.++- +.....+.....|+.++-...-+.+..
T Consensus 16 L~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----D~~~L~~Ly~~tg~~e~L~kla~iA~~ 88 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQH----SFDKLSFLYLVTGDVNKLSKMQNIAQT 88 (177)
T ss_dssp HHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----CHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----CHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4578888887765443 567788888888888888888888777653 112222222234444444433333332
Q ss_pred cCCCCchhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004243 676 LDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA 707 (766)
Q Consensus 676 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 707 (766)
... +.....+++..|+++++++.|.+.
T Consensus 89 ~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 89 RED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp TTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred Ccc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 221 222334566678888888877553
No 286
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.35 E-value=1.9 Score=45.45 Aligned_cols=78 Identities=14% Similarity=-0.010 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHHHHHh
Q 004243 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 556 (766)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~ 556 (766)
.+..+|.+......+..|...|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++.....+ .+..++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 456789998889999999999999999999999999999999999999999999999999877666 777777776654
No 287
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.96 E-value=4.6 Score=46.06 Aligned_cols=96 Identities=8% Similarity=-0.102 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHHHcc-----ccchHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccc
Q 004243 511 HERLVYEGWILYDTGHREEALSRAEKSISI-----ERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (766)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 585 (766)
...+..+-..+.+.|+.++|.+.|.+..+. .|+ .
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-----------------------------------------v 165 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-----------------------------------------L 165 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-----------------------------------------H
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-----------------------------------------H
Confidence 345667777888888888888888664421 233 2
Q ss_pred hhHHhhHHHHHHhCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhc
Q 004243 586 QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNE-LKAAYDEMTKLLEKA 647 (766)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~ 647 (766)
..|+.+-..|.+.|+.++|.+.|++..+.+ +..+|..+-..+.+.|+ .++|.+.++++.+..
T Consensus 166 vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 445666666666666666666666666552 23455556666666665 355666666665543
No 288
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.74 E-value=3.7 Score=46.77 Aligned_cols=92 Identities=9% Similarity=0.016 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----ccCCHHHHHHHh----hhcCHHHHHHHHHHHHhc--CCCCchhHHHH
Q 004243 618 RAHQGLARVYYLKNELKAAYDEMTKLLEK----AQYSASAFEKRS----EYSDREMAKNDLNMATQL--DPLRTYPYRYR 687 (766)
Q Consensus 618 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~----~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 687 (766)
..+..+-..+.+.|+.++|...|.++.+. ...+...|+.+. ..|+.++|...|++..+. .| +...|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 46778888888999999998888776432 112222222222 445556666666555432 23 34445555
Q ss_pred HHHHHhCCCH-HHHHHHHHHHHhc
Q 004243 688 AAVLMDDQKE-VEAVEELSKAIAF 710 (766)
Q Consensus 688 a~~~~~~g~~-~~A~~~~~~al~~ 710 (766)
-..+.+.|+. ++|.+.|++..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 5555555543 4555555555443
No 289
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=87.01 E-value=0.55 Score=37.87 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=30.5
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhh
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLREL 188 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~ 188 (766)
++ .+|+..++..|..++++.|.+.|.+||.+++
T Consensus 77 ~~-~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 77 LE-ADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 56 7999999999999999999999999998863
No 290
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=86.51 E-value=0.0064 Score=62.01 Aligned_cols=259 Identities=13% Similarity=0.040 Sum_probs=158.0
Q ss_pred CchhHHHHHHHHhccCc--HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 004243 319 KPTGWMYQERSLYNLGR--EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFI 396 (766)
Q Consensus 319 ~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~ 396 (766)
.|..|..+|.+.+..+. +||..|-| .+++..+.....+..+.|+|++-+.+++-+-+....+..-..+..+|.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 47889999999888776 48888733 344455556666677889999988888877655444433333667777
Q ss_pred hhhhHHHHHHHHHHHHhccCCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCc-cccHHHHHHHHHc--C
Q 004243 397 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDD-IGSLAVINQMLIN--D 473 (766)
Q Consensus 397 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~l~~~~~al~~--~ 473 (766)
+.++..+-.+. + ..|+.. -....|.-....|.|+.|.-++.....|..+.. .-.+..|+.+++. .
T Consensus 128 k~~rL~elEef----l-~~~N~A-------~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 128 KTNRLAELEEF----I-NGPNNA-------HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp TSCSSSTTTST----T-SCCSSS-------CTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hhCcHHHHHHH----H-cCCCcc-------cHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776542222 1 234444 335566666666777777533322111211100 0002223333332 2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccch-HHHHHHHH
Q 004243 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 552 (766)
Q Consensus 474 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~ 552 (766)
.+++..|-....+....+++.-|..+--..+-. |+. +-.+...|...|.+++-+..++.++.+..-+ ..+..+|.
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-ade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaI 271 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-ADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 271 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-HHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 355666777777777777776666554444433 322 1223445778899999999999999888888 88888888
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhchhhccc---------cchhHHhhHHHHHHhCCHHHHHHH
Q 004243 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLR---------KGQALNNLGSIYVECGKLDQAENC 607 (766)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---------~~~~~~~lg~~~~~~g~~~~A~~~ 607 (766)
.++... |. +.-+=++.|-.-+. ....|..+..+|..-.+|+.|...
T Consensus 272 LYsKY~--Pe-------KlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 272 LYSKFK--PQ-------KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHSSC--TT-------HHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHhcC--HH-------HHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 887663 22 23333333333222 257889999999999999988653
No 291
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.08 E-value=30 Score=35.81 Aligned_cols=101 Identities=11% Similarity=-0.056 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--chhhHHHHHHHHHHCCCHHHHHHHHHHHHcc-c--cchHHHH
Q 004243 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNH----SSS--EHERLVYEGWILYDTGHREEALSRAEKSISI-E--RTFEAFF 548 (766)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--p~~~~~~ 548 (766)
.....++.++...|++.+|...+.....- .+. -.+.+.....++...+++..|...++++... . +..+.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~-- 215 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES-- 215 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH--
Confidence 34567899999999999999999876421 111 1456777788999999999999998886421 1 11100
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 549 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 549 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
+ ....+...|.++...++|.+|-.+|..+...
T Consensus 216 --------------------------l--------k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 --------------------------L--------KLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp --------------------------H--------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred --------------------------H--------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 0 0345677788889999999999998887654
No 292
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.12 E-value=41 Score=39.84 Aligned_cols=138 Identities=12% Similarity=-0.013 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-cCCcccccccchhhhHHhHHH
Q 004243 357 YRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL-ESNYMMFHGRVSGDHLVKLLN 435 (766)
Q Consensus 357 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~a~~~l~~~~ 435 (766)
.+...+...|.++-|.+.. .-. ..++..-+++|.+++..|++++|...|+++-.- .+++.. . ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~-~~~--~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l-~------~~----- 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLI-GWL--NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ-F------AV----- 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHH-HHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS-C------SS-----
T ss_pred HHHHHHHHhhhHHHHHHHh-hhc--cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh-h------hh-----
Confidence 4455566677776665432 222 224555677999999999999999999886431 111110 0 00
Q ss_pred HHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHH---cCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-h
Q 004243 436 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI---NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-H 511 (766)
Q Consensus 436 ~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~ 511 (766)
+........ .....+..|.....++.+.|.++.+++..+.|++..+.+ .
T Consensus 882 ---------------------------~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~ 934 (1139)
T 4fhn_B 882 ---------------------------LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 934 (1139)
T ss_dssp ---------------------------HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCH
T ss_pred ---------------------------hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCCh
Confidence 000111111 122334567777788888999999999999998765433 2
Q ss_pred ----hhHHHHHHHHHHCCCHHHHHHHHHH
Q 004243 512 ----ERLVYEGWILYDTGHREEALSRAEK 536 (766)
Q Consensus 512 ----~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (766)
..|..+=..+...|+|++|-..+..
T Consensus 935 ~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 935 DLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred hhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 2566677778889999998776643
No 293
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.75 E-value=48 Score=35.92 Aligned_cols=135 Identities=10% Similarity=-0.034 Sum_probs=88.6
Q ss_pred HHHhCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHh--hhcCHHHHHHHH
Q 004243 595 YVECGKLDQAENCYINALDI--KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS--EYSDREMAKNDL 670 (766)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~--~~~~~~~A~~~~ 670 (766)
.+..|+++.|..+|++.-.. ..+...+-+|+++...|+.++|...|.++.. +.+ .|-.++ .+|.... +
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~--fYg~lAa~~Lg~~~~----~ 366 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRG--FYPMVAAQRIGEEYE----L 366 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCS--HHHHHHHHHTTCCCC----C
T ss_pred HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--hHHHHHHHHcCCCCC----C
Confidence 34569999999999876554 3456789999999999999999999999875 332 233332 2321100 0
Q ss_pred HHHHhcCCCC-----chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004243 671 NMATQLDPLR-----TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLHLRAAFYESIGDLTSAIRDSQA 739 (766)
Q Consensus 671 ~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~ 739 (766)
. .....+.. ...-...+..+...|....|...+...+.. .+......++.+....|.++.++....+
T Consensus 367 ~-~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 367 K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0 00011111 112345677888999999999999888764 3344455677888888888888766544
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.84 E-value=3.5 Score=43.08 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=57.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----------cCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHH
Q 004243 485 LLLLRLNCQKAAMRCLRLARN-----------HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 553 (766)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~a~~-----------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 553 (766)
..+...+++++|.++-...+. +++-.+.+|++++.++...|+.............+.|.. ...
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~L------l~~ 217 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTM------MKF 217 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHH------HHH
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHH------HHH
Confidence 345567788888877654431 133346677777888877777665544333333222221 111
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCC-------hHHHHHHHHH
Q 004243 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKH-------TRAHQGLARV 626 (766)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~la~~ 626 (766)
+...-+...... .+..++.+-..|...+.+++|.....++.-... ...++.+|++
T Consensus 218 ~rta~lr~D~~~------------------qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI 279 (523)
T 4b4t_S 218 LKIASLKHDNET------------------KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKI 279 (523)
T ss_dssp HHHCCSCSSSCH------------------HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcch------------------hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHH
Confidence 111111111000 145677888888899999999999888854311 2356778999
Q ss_pred HHHhccHHHHHHHHHHHHHhccCC
Q 004243 627 YYLKNELKAAYDEMTKLLEKAQYS 650 (766)
Q Consensus 627 ~~~~g~~~~A~~~~~~~l~~~p~~ 650 (766)
+..+++|.+|.+.+..++...|.+
T Consensus 280 ~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 280 NAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHhccHHHHHHHHHHHHHhCCcc
Confidence 999999999999999998877654
No 295
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=80.47 E-value=1.7 Score=46.18 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=58.4
Q ss_pred ceEEEEcCeEEEeehHHHhcCCHHHHHHhcC-----CCccCCCCeEEecCCCCCHHHHHHHHHHhhc-CCCCCCCHH-HH
Q 004243 56 SVTFCVRDKEISFVRNKIASLSSPFKAMLYG-----GFVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPG-IV 128 (766)
Q Consensus 56 dv~~~~~~~~~~~h~~~l~~~s~~f~~~~~~-----~~~e~~~~~i~~~~~~~~~~~~~~~l~~~yt-~~~~~~~~~-~~ 128 (766)
=|+|.|||+.|...+..|... =.+|+.. .+.....+++-+ |=+|..|+.+|.|+.| |++. .+.+ .+
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~---p~s~l~~~~~~~~~~~~~~~~~f~---DR~~~~F~~IL~~~r~~g~l~-~p~~~~~ 125 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQF---PETLLGDPKKRMRYFDPLRNEYFF---DRNRPSFDAILYYYQSGGRLR-RPVNVPL 125 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTS---TTSTTTCHHHHGGGEETTTTEEEE---CSCHHHHHHHHHHHHHTSCCC-CCTTSCH
T ss_pred EEEEEeCCEEEEecHHHHhcC---CCCcccccccCCcccCCCCCCEEE---cCChHHHHHHHHHHhcCCccc-cCCcccH
Confidence 577889999999999999543 2333322 122234567778 6789999999999999 9987 4433 24
Q ss_pred HHHHHHhhhhChHhHH
Q 004243 129 LELLSFANRFCCEEMK 144 (766)
Q Consensus 129 ~~~l~~a~~~~~~~l~ 144 (766)
..+..=|..|+++.+.
T Consensus 126 ~~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 126 DIFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHhcCCCHHH
Confidence 4567778899887543
No 296
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.46 E-value=3.6 Score=42.67 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=54.2
Q ss_pred chhHHhhHHHHHHhCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Q 004243 585 GQALNNLGSIYVECGKLDQAENCYINALDI-----KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (766)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 647 (766)
..++..+|..|...|++++|.+.|.++... .-.+.+....+++...+++..+...+.++....
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI 198 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 467889999999999999999999998876 123688889999999999999999999986543
No 297
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.35 E-value=4.6 Score=41.86 Aligned_cols=61 Identities=5% Similarity=-0.053 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CchhhHHHHHHHHHHCCCHHHHHHHHHHHH
Q 004243 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSS---SEHERLVYEGWILYDTGHREEALSRAEKSI 538 (766)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (766)
.++..+|..|...|++++|.+.|.++..... ...+.+.....++...+++..+...+.++-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3555666666666666666666665544321 224455555555556666666655555554
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.06 E-value=2.9 Score=43.70 Aligned_cols=138 Identities=9% Similarity=-0.040 Sum_probs=58.9
Q ss_pred HHHhCCHHHHHHHHHHHHc--c----C-------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhc
Q 004243 595 YVECGKLDQAENCYINALD--I----K-------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYS 661 (766)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~--~----~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 661 (766)
+...+++++|.++-...+. . + ....|+..+.++...|+.............+.|.-
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~L----------- 214 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTM----------- 214 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHH-----------
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHH-----------
Confidence 4567788888877765552 1 1 22467777777777776655433333333222111
Q ss_pred CHHHHHHHHHHHH-hcCCCC-chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--Ch-H-H--HHHHHHHHHHcCCHHHH
Q 004243 662 DREMAKNDLNMAT-QLDPLR-TYPYRYRAAVLMDDQKEVEAVEELSKAIAFKP--DL-Q-M--LHLRAAFYESIGDLTSA 733 (766)
Q Consensus 662 ~~~~A~~~~~~al-~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~-~-~--~~~la~~~~~~g~~~~A 733 (766)
...++.+. ..|+.. +..+..+-..|...+.+++|.....++.--.+ ++ . + .|..|.++.-+++|.+|
T Consensus 215 -----l~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA 289 (523)
T 4b4t_S 215 -----MKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTA 289 (523)
T ss_dssp -----HHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -----HHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 11112211 223222 55667778889999999999999999842211 22 1 2 22679999999999999
Q ss_pred HHHHHHHHccCCCCh
Q 004243 734 IRDSQAALCLDPNHM 748 (766)
Q Consensus 734 ~~~~~~al~~~p~~~ 748 (766)
.+++..|+...|.+.
T Consensus 290 ~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 290 NEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHhCCcch
Confidence 999999999888654
No 299
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.77 E-value=1.9 Score=34.32 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcC
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~ 156 (766)
++.+|...++.+|+.|+++.|+..|.+|+.++..
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~ 41 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLA 41 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999987654
No 300
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.19 E-value=34 Score=40.58 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=75.7
Q ss_pred HHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CC----------------------chhhHHHHHHHHHHC
Q 004243 468 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-SS----------------------EHERLVYEGWILYDT 524 (766)
Q Consensus 468 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~----------------------~~~~~~~lg~~~~~~ 524 (766)
..+...|.++...+.+|.++...|++++|..+|+++-.-- .. .+..|.....++.+.
T Consensus 833 ~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~ 912 (1139)
T 4fhn_B 833 QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE 912 (1139)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHT
T ss_pred HHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHc
Confidence 3445567777777888999999999999999888753210 00 122344455566667
Q ss_pred CCHHHHHHHHHHHHccccch-HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHH
Q 004243 525 GHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQ 603 (766)
Q Consensus 525 g~~~~A~~~~~~al~~~p~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~ 603 (766)
|.++.+++..+.|++..+.. +.. +...|.++=..+...|+|++
T Consensus 913 ~~~~~vi~fa~lAi~~~~~~~~~~------------------------------------~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 913 SAYIDALEFSLLADASKETDDEDL------------------------------------SIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SCCHHHHHHHHHHHHHCCSCCHHH------------------------------------HHHHHHHHHHHHHHHCCSGG
T ss_pred CCHHHHHHHHHHHHHhccCCChhh------------------------------------HHHHHHHHHHHHHhhCCHHH
Confidence 77777777777776543322 100 02345666667777788888
Q ss_pred HHHHHHHHHcc-CChHHHHHHHHHHHHhccH
Q 004243 604 AENCYINALDI-KHTRAHQGLARVYYLKNEL 633 (766)
Q Consensus 604 A~~~~~~al~~-~~~~~~~~la~~~~~~g~~ 633 (766)
|...+...-.. ...+.+..+.......|+.
T Consensus 957 Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 957 AHVALMVLSTTPLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp GGHHHHHHHHSSSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhCCCh
Confidence 87766544322 1223444444444444443
No 301
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=78.17 E-value=1.9 Score=35.77 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=29.6
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhh
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 187 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~ 187 (766)
++ .+|+..++..|..++++.|.+.|.+||.+|
T Consensus 95 ~~-~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LR-EGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45 799999999999999999999999999865
No 302
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.76 E-value=44 Score=32.48 Aligned_cols=150 Identities=14% Similarity=0.049 Sum_probs=83.4
Q ss_pred hHHhhHHHHHHhCCHHHHHHHHHHHHcc----CCh----HHHHHHHHHHHHhcc--HHHHHHHHHHHHHhccCCHHHHHH
Q 004243 587 ALNNLGSIYVECGKLDQAENCYINALDI----KHT----RAHQGLARVYYLKNE--LKAAYDEMTKLLEKAQYSASAFEK 656 (766)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~----~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~ 656 (766)
.+..+..=|...+++++|++.+...... +.. +.-..+..+|.+.+. .++.+..+.+.+...|........
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~ 114 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKD 114 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHH
Confidence 4556667778888999999886654432 221 222333345444443 133444444555443332211000
Q ss_pred HhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHH---------------H-h---cCCChHHH
Q 004243 657 RSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKA---------------I-A---FKPDLQML 717 (766)
Q Consensus 657 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l-~---~~p~~~~~ 717 (766)
. ..+|+.+-.+.-...-.++..+..+|..|.+.|++.+|..+|-.. . + -.|.....
T Consensus 115 f-----i~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl 189 (312)
T 2wpv_A 115 V-----ITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE 189 (312)
T ss_dssp H-----HHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred H-----HHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 0 133444433322222357899999999999999999999977311 0 1 11222333
Q ss_pred H-HHH-HHHHHcCCHHHHHHHHHHHH
Q 004243 718 H-LRA-AFYESIGDLTSAIRDSQAAL 741 (766)
Q Consensus 718 ~-~la-~~~~~~g~~~~A~~~~~~al 741 (766)
+ .++ .-|...|+...|...+....
T Consensus 190 f~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 190 FFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3 443 34566899999998887664
No 303
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=76.69 E-value=1.1 Score=37.80 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=28.6
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhhh
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPS 190 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~ 190 (766)
++ .+|+..++..|..++++.|.+.|.+|+.+++..
T Consensus 87 i~-~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 87 LT-SGNRDQVLLAAKELRVPEAVELCQSFQPQTSVG 121 (135)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHCCC-----
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccC
Confidence 56 899999999999999999999999999988764
No 304
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=76.43 E-value=0.9 Score=38.51 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=31.6
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhh
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRELP 189 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~ 189 (766)
++ .+|+..++..|..++++.|.+.|.+||..++.
T Consensus 101 i~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 101 LS-KDNVDEVCRCVEFLSVHNIEESCFQFLKFKFL 134 (138)
T ss_dssp CC-TTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 56 89999999999999999999999999998875
No 305
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.25 E-value=8.4 Score=27.93 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHH
Q 004243 719 LRAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNR 756 (766)
Q Consensus 719 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 756 (766)
.+|..+...|++++|..+|-+|+...|+-.+....+.+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45677777777777777777777777776665555543
No 306
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=74.10 E-value=3.2 Score=33.99 Aligned_cols=32 Identities=22% Similarity=0.108 Sum_probs=29.3
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhh
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 187 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~ 187 (766)
++ .+|+..++..|..++.+.|.+.|.+|+.+.
T Consensus 89 ~~-~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 89 AK-AEDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp CC-GGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 45 899999999999999999999999999764
No 307
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=73.59 E-value=2.7 Score=34.17 Aligned_cols=30 Identities=7% Similarity=-0.050 Sum_probs=27.9
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHH
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLL 185 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~ 185 (766)
++ .+|+..++..|..++++.|.+.|.+|+.
T Consensus 86 ~~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LD-SWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45 7899999999999999999999999985
No 308
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=72.81 E-value=1.8 Score=35.50 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=27.5
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhh
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRE 187 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~ 187 (766)
++ .+|+..++..|..++.+.|.+.|.+|+.++
T Consensus 86 ~~-~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LT-SGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cC-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 55 799999999999999999999999998775
No 309
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=72.79 E-value=3.1 Score=33.95 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=28.0
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHH
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLL 185 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~ 185 (766)
++ .+|+..++..|..++++.|.+.|.+||.
T Consensus 88 i~-~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LS-PENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 56 7999999999999999999999999985
No 310
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=70.63 E-value=0.015 Score=59.44 Aligned_cols=250 Identities=13% Similarity=0.012 Sum_probs=145.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccccchHHHHHHHHHH
Q 004243 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 554 (766)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l 554 (766)
+.+..|..+|.+++..++..+|++.|-+ .+++..+.....+..+.|.+++=+.++..+-+.-.+...-..+..++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk-----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC-----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 5678899999999999999999988754 34444555566667788999988888877766543332334455666
Q ss_pred HhcCCCCC---------C-hHHHHHHHHHHHhchhhcc---ccchhHHhhHHHHHHhCCHHHHHHHHHHHHccCChHHHH
Q 004243 555 ADTNLDPE---------S-STYVIQLLEEALRCPSDGL---RKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQ 621 (766)
Q Consensus 555 ~~~~~~~~---------~-~~~~~~~~~~A~~~~~~~l---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 621 (766)
+..+.-.. . .-..+|+-==....|+.+. ....-|..|+.++..+|+|..|++.-++ -+++.+|-
T Consensus 127 Ak~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK---Ans~ktWK 203 (624)
T 3lvg_A 127 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK---ANSTRTWK 203 (624)
T ss_dssp HTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT---CCSSCSHH
T ss_pred HhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh---cCChhHHH
Confidence 65542110 0 0011111100011111110 0123455667777777777777664333 25667787
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhccCC-HHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHH
Q 004243 622 GLARVYYLKNELKAAYDEMTKLLEKAQYS-ASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEA 700 (766)
Q Consensus 622 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 700 (766)
....+....+++.-|..+--..+ ..|+. .+.....-..|-+++-+..++.++.+..-.......||.+|.+- +.++-
T Consensus 204 eV~~ACvd~~EfrLAqicGLniI-vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKl 281 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKM 281 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHH-CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHH
T ss_pred HHHHHHhCchHHHHHHHhcchhc-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHH
Confidence 77777778887776655544444 22222 22212222457778888888888888877888888888777654 44444
Q ss_pred HHHHHHHHhc--CCCh-------HHHHHHHHHHHHcCCHHHHH
Q 004243 701 VEELSKAIAF--KPDL-------QMLHLRAAFYESIGDLTSAI 734 (766)
Q Consensus 701 ~~~~~~al~~--~p~~-------~~~~~la~~~~~~g~~~~A~ 734 (766)
.+.++.-... -|.- ..|--+--+|.+-.+++.|.
T Consensus 282 mEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 282 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 4444332111 1221 22335566777777777664
No 311
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=69.85 E-value=1.6e+02 Score=33.63 Aligned_cols=42 Identities=29% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHhhcchhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHH
Q 004243 240 MLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAA 282 (766)
Q Consensus 240 ~~l~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 282 (766)
..++.+-+-.+.+ .+..+-.....+|+..|+|++|+++--.|
T Consensus 55 ~~ie~l~ed~~f~-~r~laalvaSkvyy~Lg~~~~al~yaL~a 96 (963)
T 4ady_A 55 PDIEALYDDDTFS-DREMAALIASKVYYNLGEYESAVKYALAA 96 (963)
T ss_dssp HHHHHHHSCTTCT-THHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcc-hHHHHHHHHHHHheeccchHHHHHHHHhC
Confidence 3445554433333 34444455788999999999999886554
No 312
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=68.44 E-value=5 Score=32.71 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=27.2
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHH
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVL 184 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i 184 (766)
++ .+|+..++..|..++++.|.+.|.+|+
T Consensus 91 ~~-~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VS-TANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CC-GGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cC-HHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 45 799999999999999999999999987
No 313
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=60.74 E-value=5.6 Score=34.90 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcC
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~ 156 (766)
++.+++.+++.+|..|+++.|+..|.+++.+++.
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999998765
No 314
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=59.63 E-value=7 Score=31.84 Aligned_cols=32 Identities=9% Similarity=-0.048 Sum_probs=27.8
Q ss_pred hcCChhhHHHHHHHHHhhChHHHHHHHHHHHHh
Q 004243 154 LVGDIEDALILIDYGLEERATLLVASCLQVLLR 186 (766)
Q Consensus 154 ~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~ 186 (766)
.++ .+|+..++..|..++.+.|.+.|.+++..
T Consensus 86 ~i~-~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 86 ELQ-PGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp EEC-GGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CcC-HHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 356 89999999999999999999999998764
No 315
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=58.37 E-value=1.4e+02 Score=28.98 Aligned_cols=27 Identities=15% Similarity=-0.153 Sum_probs=23.7
Q ss_pred CchhhHHHHHHHHHHCCCHHHHHHHHH
Q 004243 509 SEHERLVYEGWILYDTGHREEALSRAE 535 (766)
Q Consensus 509 ~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (766)
.+|+.+..+|..+...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578899999999999999999988885
No 316
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=58.16 E-value=4.5 Score=34.39 Aligned_cols=29 Identities=14% Similarity=0.028 Sum_probs=27.0
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHH
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVL 184 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i 184 (766)
++ .+|+..++..|..++++.|.+.|.+||
T Consensus 115 i~-~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 115 LN-EDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CC-TTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CC-HHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 46 899999999999999999999999886
No 317
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=56.68 E-value=19 Score=27.15 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=25.5
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
.+..+-..+..+++.|+|++||++.++|...
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4555667888999999999999999998753
No 318
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=54.09 E-value=5.7 Score=33.65 Aligned_cols=34 Identities=18% Similarity=-0.037 Sum_probs=26.3
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhh
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRELP 189 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~ 189 (766)
++ .+|+..++..|..++++.|.+.|.+|+.+++.
T Consensus 91 ~~-~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~ 124 (145)
T 4eoz_A 91 NL-DKMADDLLAAADKYALERLKVMCEDALCSNLS 124 (145)
T ss_dssp TG-GGTHHHHHHHHHHTTCHHHHHHHHCC------
T ss_pred Cc-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 45 78999999999999999999999999987653
No 319
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=53.52 E-value=15 Score=28.17 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=16.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCChhHHH
Q 004243 720 RAAFYESIGDLTSAIRDSQAALCLDPNHMETLD 752 (766)
Q Consensus 720 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 752 (766)
+|..+...|+++.|+.+|-+|+...|+-.+.+.
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~ 58 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 58 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555555555555555555333333
No 320
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=53.34 E-value=12 Score=19.49 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.8
Q ss_pred HHHHHHHHhhChHHHHHHHHHH
Q 004243 162 LILIDYGLEERATLLVASCLQV 183 (766)
Q Consensus 162 ~~~~~~a~~~~~~~l~~~~~~~ 183 (766)
+.++..|..|+.++|...|++-
T Consensus 2 ckvmcyaqrhsspellrrcldn 23 (26)
T 2plx_B 2 CKVMCYAQRHSSPELLRRCLDN 23 (26)
T ss_dssp HHHHHHHBCCCCHHHHHHHHHH
T ss_pred ceEEeehhhcCCHHHHHHHHhc
Confidence 3567788999999999998863
No 321
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=52.29 E-value=26 Score=25.40 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHHH
Q 004243 685 RYRAAVLMDDQKEVEAVEELSKAIAFKPDLQMLH 718 (766)
Q Consensus 685 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 718 (766)
..+|..+...|++++|...|-+|+...|+...+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4679999999999999999999999998885543
No 322
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=50.40 E-value=26 Score=26.17 Aligned_cols=32 Identities=6% Similarity=-0.036 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 254 QRMLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 254 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
+.+..+...|...=+.|+|++|+.+|..+++.
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34445556677777889999999999998875
No 323
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=48.04 E-value=25 Score=30.23 Aligned_cols=64 Identities=9% Similarity=0.030 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHhhhhC---------------hHhHHHHHHHHHHhhcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhh
Q 004243 123 FCPGIVLELLSFANRFC---------------CEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRE 187 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~---------------~~~l~~~c~~~l~~~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~ 187 (766)
++...+..|+..+.... -..+..-..+|+ .++ .+++++++..|...+.+.|.+.|.+|+...
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~id-~~~l~eLl~AAnyL~I~~Lld~~c~~va~~ 125 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVD-QGTLFELILAANYLDIKGLLDVTCKTVANM 125 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHT--CSC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHH--cCC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66676777777665443 112233344455 378 999999999999999999999999999877
Q ss_pred hh
Q 004243 188 LP 189 (766)
Q Consensus 188 ~~ 189 (766)
+.
T Consensus 126 i~ 127 (159)
T 2ast_A 126 IK 127 (159)
T ss_dssp HS
T ss_pred Hc
Confidence 64
No 324
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=47.93 E-value=46 Score=27.63 Aligned_cols=79 Identities=13% Similarity=-0.055 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004243 631 NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 631 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 709 (766)
|+...-+.+|-+.-....--..++..+-..|+.++-...+...+...+-+|+.+..+|.+|.+.|+..+|.+.+.+|-+
T Consensus 75 ~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 75 QNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp SCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 325
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=47.48 E-value=2.9 Score=34.79 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=23.2
Q ss_pred hcCChhhHHHHHHHHHhhChHHHHHHHHHHHHhh
Q 004243 154 LVGDIEDALILIDYGLEERATLLVASCLQVLLRE 187 (766)
Q Consensus 154 ~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~ 187 (766)
.++ .+|+..++..|..++++.|.+.|.+|+.+.
T Consensus 95 ~i~-~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 95 SMN-VGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp ECC-TTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred ccC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 356 899999999999999999999999999764
No 326
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=45.05 E-value=13 Score=36.46 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHhhhhChHhHHHHHHHHHHhhcC
Q 004243 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (766)
Q Consensus 123 ~~~~~~~~~l~~a~~~~~~~l~~~c~~~l~~~~~ 156 (766)
++.+++.+++.+|++|+++.|+..|.+++.+++.
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5677999999999999999999999999998765
No 327
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=44.78 E-value=2e+02 Score=26.84 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Q 004243 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIA-ADDYESALRDTLALL 412 (766)
Q Consensus 353 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~-~g~~~~A~~~~~~al 412 (766)
.-+..+|.+..+.++|++.+...+++.+.++ +.+.-.++..+|-. .|....+.+.+..+.
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissie 94 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHH
Confidence 4566778888999999999999999998877 55555556666644 466666666665443
No 328
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=43.72 E-value=4.1e+02 Score=30.25 Aligned_cols=122 Identities=10% Similarity=0.026 Sum_probs=65.9
Q ss_pred HHhhhhHHHHHHHHHHHHhcc-CCcccccccchhhhHHhHHHHHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcC
Q 004243 395 FIAADDYESALRDTLALLALE-SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND 473 (766)
Q Consensus 395 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~ 473 (766)
....|+.++++..+.+.+... .++ ...+..++..+|.++...+. .+..++ ...+..+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~--~~ik~GAllaLGli~ag~~~--~~~~lL------------------~~~L~~~ 441 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASS--RFIKGGSLYGLGLIYAGFGR--DTTDYL------------------KNIIVEN 441 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSC--HHHHHHHHHHHHHHTTTTTH--HHHHHH------------------HHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCc--HHHHHHHHHHHHHhcCCCcH--HHHHHH------------------HHHHcCc
Confidence 345677778877776655421 111 12233566777777655443 333222 2333221
Q ss_pred C---C---C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 004243 474 P---G---K----SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHREEALSRAEKSIS 539 (766)
Q Consensus 474 p---~---~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (766)
. . . ..+-..+|.++...++ +++.+.+...+..+... ..+-+.+|.++.-.|+-+.....+..+.+
T Consensus 442 ~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 442 SGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence 1 0 1 1345577777776665 45667777766643322 13455678888888886655555555543
No 329
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=42.66 E-value=17 Score=34.30 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=29.9
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhh
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLREL 188 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~ 188 (766)
++ .+|+..++..|..++.+.|.+.|.+|+.+++
T Consensus 99 i~-~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l 131 (256)
T 3hve_A 99 LN-EDTIQDVVQAADLLLLTDLKTLCCEFLEGCI 131 (256)
T ss_dssp CC--CCHHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred cc-HhHHHHHHHHHHHHChHHHHHHHHHHHHhhC
Confidence 56 8999999999999999999999999998875
No 330
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.04 E-value=2.9e+02 Score=31.79 Aligned_cols=109 Identities=11% Similarity=-0.072 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHHHHHHHHccc--cch--HHHHHHHHHHHh
Q 004243 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--RTF--EAFFLKAYILAD 556 (766)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~l~~ 556 (766)
..+...+...|.++-|.+ ....-|.++..-+.+|.++...|++++|..+|+++-.-- ++. .........+..
T Consensus 814 ~~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 345666777888876544 456667788888999999999999999999999876321 110 000000111100
Q ss_pred cCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCCHHHHHHHHHHHHcc
Q 004243 557 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 614 (766)
Q Consensus 557 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (766)
.. ....-...|.....++...+-++-+++.-+.|++.
T Consensus 890 ~e---------------------~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YH---------------------HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TT---------------------TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cc---------------------ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00 00000236777888888889999999988888876
No 331
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=41.23 E-value=81 Score=26.32 Aligned_cols=82 Identities=9% Similarity=-0.006 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHhhhhC---------------hHhHHHHHHHHHHhhcCChhhHHHHHHH
Q 004243 105 VEGLRAVEVYTRTSRVD--LFCPGIVLELLSFANRFC---------------CEEMKSACDAHLASLVGDIEDALILIDY 167 (766)
Q Consensus 105 ~~~~~~~l~~~yt~~~~--~~~~~~~~~~l~~a~~~~---------------~~~l~~~c~~~l~~~~~~~~n~~~~~~~ 167 (766)
...++.+++-.=.+.+. .++...+..++..+.... -..+..--.+|+ .++ .+++++++..
T Consensus 24 S~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~vd-~~~l~eLi~A 100 (141)
T 1fs1_B 24 SVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVD-QGTLFELILA 100 (141)
T ss_dssp CHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHT--CSC-HHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHH--hCC-HHHHHHHHHH
Confidence 45666666542122232 167787778887776554 112333334445 377 9999999999
Q ss_pred HHhhChHHHHHHHHHHHHhhhh
Q 004243 168 GLEERATLLVASCLQVLLRELP 189 (766)
Q Consensus 168 a~~~~~~~l~~~~~~~i~~~~~ 189 (766)
|...+.+.|.+.|.+++...+.
T Consensus 101 AnyL~I~~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 101 ANYLDIKGLLDVTCKTVANMIK 122 (141)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHHHHHc
Confidence 9999999999999999988664
No 332
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=40.43 E-value=39 Score=25.20 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=23.1
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
.+..+...|...=+.|+|++|+.+|..+++.
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555666677788999999999888875
No 333
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=40.15 E-value=18 Score=34.66 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=30.5
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhh
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLREL 188 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~ 188 (766)
++ .+|+..++..|..++.+.|.+.|.+|+.+++
T Consensus 107 i~-~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l 139 (279)
T 3i3n_A 107 VS-TGSVHEVLELADRFLLIRLKEFCGEFLKKKL 139 (279)
T ss_dssp EE-TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cC-HHHHHHHHHHHHHHCcHHHHHHHHHHHHHcC
Confidence 56 7899999999999999999999999998865
No 334
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=36.75 E-value=32 Score=25.70 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=11.3
Q ss_pred HHHhCCCHHHHHHHHHHHH
Q 004243 690 VLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 690 ~~~~~g~~~~A~~~~~~al 708 (766)
-.-..|++++|+.+|..++
T Consensus 28 e~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 28 KADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 3455666666666666543
No 335
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=36.02 E-value=36 Score=25.37 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=11.7
Q ss_pred HHHhCCCHHHHHHHHHHHH
Q 004243 690 VLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 690 ~~~~~g~~~~A~~~~~~al 708 (766)
-.-+.|++++|+.+|..++
T Consensus 20 e~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 20 KADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 3455677777766666554
No 336
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=34.95 E-value=2.8 Score=34.60 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=26.8
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHH
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLL 185 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~ 185 (766)
++ .+|+..++..|..++++.|.+.|.+|+.
T Consensus 94 i~-~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 94 LS-KENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp EE-TTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred cC-HHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 56 7999999999999999999999998864
No 337
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=34.39 E-value=47 Score=25.08 Aligned_cols=28 Identities=29% Similarity=0.148 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004243 681 TYPYRYRAAVLMDDQKEVEAVEELSKAI 708 (766)
Q Consensus 681 ~~~~~~la~~~~~~g~~~~A~~~~~~al 708 (766)
+..+-.++..+...|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445577888899999999998877664
No 338
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.01 E-value=1.9e+02 Score=24.76 Aligned_cols=59 Identities=12% Similarity=-0.082 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCh--H--HHH---H-H--HHHHHHcCCHHHHHHHHHHHHcc
Q 004243 685 RYRAAVLMDDQKEVEAVEELSKAIAFKPDL--Q--MLH---L-R--AAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 685 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~--~~~---~-l--a~~~~~~g~~~~A~~~~~~al~~ 743 (766)
+.-|..++..|+|-+|-+.++.+....+.. . .+. . + |..+.+.||...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455667888899999999999998775443 2 222 2 2 44556689999999999999773
No 339
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=33.94 E-value=1.5e+02 Score=22.46 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=11.4
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 004243 692 MDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 692 ~~~g~~~~A~~~~~~al~ 709 (766)
-..|+|++|+.+|..+++
T Consensus 26 D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 445777777777666543
No 340
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=33.51 E-value=29 Score=25.49 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.6
Q ss_pred HHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 260 HQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 260 ~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
..+|+-|...|+|+.|+.+|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 35788888889999999999999875
No 341
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=33.33 E-value=1.5e+02 Score=22.15 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=11.9
Q ss_pred HHhCCCHHHHHHHHHHHHh
Q 004243 691 LMDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 691 ~~~~g~~~~A~~~~~~al~ 709 (766)
.-..|++++|+.+|..+++
T Consensus 26 ~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 26 LDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3456777777777666543
No 342
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=33.18 E-value=3e+02 Score=25.63 Aligned_cols=167 Identities=14% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccc--cch--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhchhhccccc---h
Q 004243 514 LVYEGWILYDTGHREEALSRAEKSISIE--RTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---Q 586 (766)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~ 586 (766)
+..++.+..+.++|++.+..++++...+ +.. +-...+..++...- + .
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvi--------------------------g~rR~ 64 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVI--------------------------GARRA 64 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHH--------------------------HHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhh--------------------------cchHH
Q ss_pred hHHhhHHHHHHhC-----CHHHHHHHHHHHHcc----CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHH
Q 004243 587 ALNNLGSIYVECG-----KLDQAENCYINALDI----KHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKR 657 (766)
Q Consensus 587 ~~~~lg~~~~~~g-----~~~~A~~~~~~al~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 657 (766)
.|..+..+-.+.. ....-+..|++-++. --.++...+-..+.-.-.-.++...|.++.
T Consensus 65 swRiissieqke~~k~~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMK------------- 131 (260)
T 1o9d_A 65 SWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMK------------- 131 (260)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHh-------------
Q ss_pred hhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCHH---HHHHHHHHHHhc-----CCChHHHH----HHHHHHH
Q 004243 658 SEYSDREMAKNDLNMATQLDPLRTYPYRYRAAVLMDDQKEV---EAVEELSKAIAF-----KPDLQMLH----LRAAFYE 725 (766)
Q Consensus 658 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~-----~p~~~~~~----~la~~~~ 725 (766)
+..|..++.+.....+.+ .|...|+.|.++ .|.+|... +.+..|.
T Consensus 132 -----------------------GDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyY 188 (260)
T 1o9d_A 132 -----------------------GDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYY 188 (260)
T ss_dssp -----------------------HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------ccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Q ss_pred H-cCCHHHHHHHHHHHHc
Q 004243 726 S-IGDLTSAIRDSQAALC 742 (766)
Q Consensus 726 ~-~g~~~~A~~~~~~al~ 742 (766)
. +|+.++|....++++.
T Consensus 189 Eiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 189 EILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HTSCCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
No 343
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=33.15 E-value=2.2e+02 Score=28.44 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=29.7
Q ss_pred HHHHHHHHHhc-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 337 KIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 378 (766)
Q Consensus 337 A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 378 (766)
++..|.+++.. .-.+...|..+|-.+++.+++.+|+..+..+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHH
Confidence 66667776654 2345667777788888888888888777665
No 344
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.87 E-value=43 Score=26.69 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHH
Q 004243 695 QKEVEAVEELSK 706 (766)
Q Consensus 695 g~~~~A~~~~~~ 706 (766)
|+.++|+.+|++
T Consensus 36 g~k~~Al~lYk~ 47 (116)
T 2dl1_A 36 GQKEEAKNYYKQ 47 (116)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444444444443
No 345
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=31.81 E-value=3e+02 Score=25.19 Aligned_cols=57 Identities=9% Similarity=0.121 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHh-hhhHHHHHHHHHH
Q 004243 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIA-ADDYESALRDTLA 410 (766)
Q Consensus 354 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~-~g~~~~A~~~~~~ 410 (766)
-+..+|.+..+.++|++.+...+++.+.++ +.+.-.++...|-. .|....+.+.+..
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiiss 66 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISS 66 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455778888899999999999999998776 55555556666644 3555555555544
No 346
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=31.67 E-value=63 Score=24.13 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=22.7
Q ss_pred HHHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 255 RMLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 255 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
.+..+...|.-.-..|+|++|+.+|..+++.
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455566666779999999999998875
No 347
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=31.65 E-value=69 Score=24.04 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=18.6
Q ss_pred HhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 261 QLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
..|.-.-..|+|++|+.+|..+++.
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444456678899999999888865
No 348
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=30.83 E-value=66 Score=24.57 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=21.8
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
+..+...|.-.-..|+|++|+.+|..+++.
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455566667778999999888888875
No 349
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.77 E-value=2.5e+02 Score=27.57 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=27.5
Q ss_pred HHHHHHHHHhc-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004243 337 KIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 378 (766)
Q Consensus 337 A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 378 (766)
++..|.+||.. ...+...|..+|-.+++.+++.+|+..+..+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 66666666643 2344566777777777777777777776655
No 350
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=30.42 E-value=46 Score=25.52 Aligned_cols=33 Identities=24% Similarity=0.183 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCChHHH
Q 004243 685 RYRAAVLMDDQKEVEAVEELSKAIAFKPDLQML 717 (766)
Q Consensus 685 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 717 (766)
..+|..+...|+++.|+..|-+|+...|+...+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 467999999999999999999999998887544
No 351
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=29.53 E-value=3.3e+02 Score=24.94 Aligned_cols=61 Identities=8% Similarity=-0.050 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHh-hhhHHHHHHHHHHHHh
Q 004243 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIA-ADDYESALRDTLALLA 413 (766)
Q Consensus 353 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~ 413 (766)
.-+..+|.+..+.++|++.....+++.+.++ +.+.-.++...|-. .|....+.+.+..+.+
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieq 72 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQ 72 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 3456778899999999999999999988877 55555666666644 4666777776655443
No 352
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=29.35 E-value=99 Score=27.74 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhHHhhcccHHHHHHHHHHHHhcCcccc
Q 004243 254 QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYS 290 (766)
Q Consensus 254 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 290 (766)
+...-+|.+|..++.+++|.+|.+.|..|+...|...
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4456678899999999999999999999999877543
No 353
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=29.02 E-value=1.7e+02 Score=21.78 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 254 QRMLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 254 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
..+.....-|.-+++.++|.+|...|+++...
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 34555666788889999999999999999865
No 354
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.97 E-value=1.4e+02 Score=26.74 Aligned_cols=68 Identities=12% Similarity=-0.057 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHhhh--cC-HHHHHHHHHHHH--hcCCCCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCh
Q 004243 647 AQYSASAFEKRSEY--SD-REMAKNDLNMAT--QLDPLRTYPYRYRAAVLMDDQKEVEAVEELSKAIAFKPDL 714 (766)
Q Consensus 647 ~p~~~~~~~~~~~~--~~-~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 714 (766)
+|....+|...+.+ .+ ..++...|.-.. .+.-..+..|...|..+...|++.+|.+.|+.+++....+
T Consensus 76 D~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 76 DPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
No 355
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.41 E-value=7.4e+02 Score=28.32 Aligned_cols=110 Identities=15% Similarity=0.023 Sum_probs=63.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-ccCCcccccccchhhhHHhHHH
Q 004243 358 RAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA-LESNYMMFHGRVSGDHLVKLLN 435 (766)
Q Consensus 358 ~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~a~~~l~~~~ 435 (766)
+...+...|.++-|.+ .+..-| ++..-|++|.+++..|++++|...|+++-. +.+..... ........+
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~----~~~~~~~~l- 886 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF----AVLREFQEI- 886 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSC----GGGHHHHHH-
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccc----cchhhhhhc-
Confidence 4555666777765543 223333 444557789999999999999999987643 21111100 000000000
Q ss_pred HHHhhhchHhhHHHhhhhhcccCccccHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 004243 436 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 507 (766)
Q Consensus 436 ~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 507 (766)
-...+.......+|.....++...+-++-++...+.|++..
T Consensus 887 -------------------------------l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 887 -------------------------------AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp -------------------------------HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred -------------------------------cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 00000111123467778888888999999999999888753
No 356
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=26.86 E-value=4e+02 Score=26.78 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=47.6
Q ss_pred HHHHHHHHHhc---cHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhc-----CCCCchhHHHHHHHHH
Q 004243 621 QGLARVYYLKN---ELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQL-----DPLRTYPYRYRAAVLM 692 (766)
Q Consensus 621 ~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~ 692 (766)
..|-.+++..| +|.-|+-.+-..-+..|.... ..++..|++++.. .......|..+|-.+.
T Consensus 246 q~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~gr-----------p~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~ 314 (489)
T 4gq4_A 246 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR-----------PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHC 314 (489)
T ss_dssp HHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTS-----------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhcchhhhcccCHhhcCCCCCC-----------CCHHHHHHHHHHHHHHhcccCcccceeecchHHH
Confidence 33444444444 355666666666666554421 2334455555542 3455788888888888
Q ss_pred hCCCHHHHHHHHHHHH
Q 004243 693 DDQKEVEAVEELSKAI 708 (766)
Q Consensus 693 ~~g~~~~A~~~~~~al 708 (766)
+.+++.+|+..+..+-
T Consensus 315 R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 315 RNRNVREALQAWADTA 330 (489)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhh
Confidence 8888888888887774
No 357
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=26.69 E-value=80 Score=25.37 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=21.0
Q ss_pred HHHHHHhhhHHhhcccHHHHHHHHHHHHhc
Q 004243 256 MLALHQLGCVMFEREEYKDACYYFEAAADA 285 (766)
Q Consensus 256 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (766)
+..+...|.-.-..|+|++|+.+|..+++.
T Consensus 18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 333444555556678999999988888875
No 358
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=25.92 E-value=1.2e+02 Score=27.20 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 004243 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (766)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~ 510 (766)
...+.+|..+...++|.+|.+.+..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 345566666666666666666666666655543
No 359
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=25.51 E-value=3.8e+02 Score=27.56 Aligned_cols=112 Identities=10% Similarity=-0.017 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhhhhhhcCcccccccccCchHHHHHHhhcCchhHHHHHhhhhhhhcccchhhHHHHHHHHhh---cc
Q 004243 173 ATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGE---CS 249 (766)
Q Consensus 173 ~~~l~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~---~~ 249 (766)
-....+.|-+.|.+-|..+..+..-.--...++++.-..-+....+-.|.-++...+. ......++...- ..
T Consensus 138 ~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lc-----kni~k~i~~~~~~p~~~ 212 (455)
T 3t5v_B 138 SHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLC-----SNIFKNFQPKSMLAHFN 212 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTH-----HHHHHTHHHHCCCSCGG
T ss_pred chhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHH-----HHHHHHhccCCCCcChh
Confidence 4567777888999988877664332100111334433333333334333333322111 111111221110 00
Q ss_pred -hhhHHHHHHHHHhhhHHhhcccHHHHHHHHHHHHhc-Cccc
Q 004243 250 -TERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA-GHIY 289 (766)
Q Consensus 250 -~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~ 289 (766)
-...+.+.-+|.+|..++.+++|.+|.+.+..|+.. .|..
T Consensus 213 ~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 213 EYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred hCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 011256667789999999999999999999999987 6654
No 360
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=24.82 E-value=4.2e+02 Score=24.50 Aligned_cols=61 Identities=8% Similarity=0.001 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhc
Q 004243 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIA-ADDYESALRDTLALLAL 414 (766)
Q Consensus 354 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~ 414 (766)
-+..+|.+..+.++|++.....+++...++ +.+.-.++...|-. .|....+.+.+..+.+.
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqk 69 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQK 69 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 356678889999999999999999998877 55555556666644 46666676666544443
No 361
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=24.06 E-value=24 Score=19.65 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=16.6
Q ss_pred HHHHHHHHhhChHHHHHHHHHHH
Q 004243 162 LILIDYGLEERATLLVASCLQVL 184 (766)
Q Consensus 162 ~~~~~~a~~~~~~~l~~~~~~~i 184 (766)
+.++..|..|+.++|...|+.-.
T Consensus 7 ckvmcyaqrhsspellrrcldnc 29 (34)
T 2cmy_B 7 CKVMCYAQRHSSPELLRRCLDNC 29 (34)
T ss_dssp CHHHHHHBC--CCHHHHHHHHHC
T ss_pred hhHHHHHhhcCCHHHHHHHHHhh
Confidence 35678899999999999998643
No 362
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=23.67 E-value=4.2 Score=33.49 Aligned_cols=30 Identities=27% Similarity=0.250 Sum_probs=25.9
Q ss_pred hcCChhhHHHHHHHHHhhChHHHHHHHHHHH
Q 004243 154 LVGDIEDALILIDYGLEERATLLVASCLQVL 184 (766)
Q Consensus 154 ~~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i 184 (766)
.++ .+|+..++..|..++++.|.+.|.+|+
T Consensus 96 ~~~-~~~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 96 LLS-RENIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp EEC-TTTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred EEC-HHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 356 899999999999999999999887653
No 363
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=23.65 E-value=5.2e+02 Score=25.19 Aligned_cols=227 Identities=12% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCH---HHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCHHHHHH----HHHHHHccccch---HHHHHH
Q 004243 481 FRQSLLLLRLNCQ---KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALS----RAEKSISIERTF---EAFFLK 550 (766)
Q Consensus 481 ~~la~~~~~~g~~---~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~----~~~~al~~~p~~---~~~~~~ 550 (766)
..+-..-...|+| =+|-+.++..... |.+.++|++|++ -....++..... +.-..+
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi~~R--------------y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~ll 81 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLVAAR--------------YSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLL 81 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHH--------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHHHHH--------------HHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHH
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHhchhhccccchhHHhhHHHHHHhCC--------HHHHHHHHHHHHcc--CChHHH
Q 004243 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGK--------LDQAENCYINALDI--KHTRAH 620 (766)
Q Consensus 551 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~--~~~~~~ 620 (766)
..++...+.... ......+..++..... .++|+.+-.+.-.. ++++.+
T Consensus 82 vevy~~~~~~~~----------------------~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH 139 (336)
T 3lpz_A 82 VDTFRQAGQRVD----------------------GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELH 139 (336)
T ss_dssp HHHHHHHTCCCC----------------------HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHH
T ss_pred HHHHHHcCCCCC----------------------HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHH
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHhCCCHHH
Q 004243 621 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPLRTYPYRYRAAV-LMDDQKEVE 699 (766)
Q Consensus 621 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~ 699 (766)
..+|..+.+.+++.+|...| +--..+.+..+... .++-..+..|.....+..+|.+ |...++...
T Consensus 140 ~~ig~~~~~e~~~~~Ae~H~---ilg~~~s~~~~a~m-----------L~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~ 205 (336)
T 3lpz_A 140 HVVGTLYVEEGEFEAAEKHL---VLGTKESPEVLARM-----------EYEWYKQDESHTAPLYCARAVLPYLLVANVRA 205 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHH---TTSCTTHHHHHHHH-----------HHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHccCCHHHHHHHH---HhcCCchHHHHHHH-----------HHHHHHhcCCccHHHHHHHHHHHHHHhCCHHH
Q ss_pred HHHHHHHHHhc----------------------CCChHHHH--HHHHHHHHcC---CHHHHHHHHHHHHccCC-CChhHH
Q 004243 700 AVEELSKAIAF----------------------KPDLQMLH--LRAAFYESIG---DLTSAIRDSQAALCLDP-NHMETL 751 (766)
Q Consensus 700 A~~~~~~al~~----------------------~p~~~~~~--~la~~~~~~g---~~~~A~~~~~~al~~~p-~~~~~~ 751 (766)
|...+..-.+. .|+.+.+. .+-.+-.+.+ -+..-.+.|+..++.+| ...+..
T Consensus 206 A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L 285 (336)
T 3lpz_A 206 ANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTAL 285 (336)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHH
T ss_pred HHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHH
Q ss_pred HHHHHH
Q 004243 752 DLYNRA 757 (766)
Q Consensus 752 ~~l~~~ 757 (766)
..++++
T Consensus 286 ~~IG~~ 291 (336)
T 3lpz_A 286 ELIAEM 291 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 364
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=23.48 E-value=2.3e+02 Score=20.97 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=11.9
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 004243 692 MDDQKEVEAVEELSKAIA 709 (766)
Q Consensus 692 ~~~g~~~~A~~~~~~al~ 709 (766)
-..|++++|+.+|..+++
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 445777777777766654
No 365
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.15 E-value=64 Score=23.68 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=18.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcc
Q 004243 719 LRAAFYESIGDLTSAIRDSQAALCL 743 (766)
Q Consensus 719 ~la~~~~~~g~~~~A~~~~~~al~~ 743 (766)
.+|+=|...|+|+.|+.+|+.+++.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHH
Confidence 5677777788888888888777653
No 366
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.08 E-value=95 Score=32.01 Aligned_cols=62 Identities=8% Similarity=0.057 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC--C--------chhhHHHHHHHHHHCCCHHHHHHHHHHHHcc-ccc
Q 004243 482 RQSLLLLRLNCQKAAMRCLRLARNHSS--S--------EHERLVYEGWILYDTGHREEALSRAEKSISI-ERT 543 (766)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~a~~~~p--~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~ 543 (766)
.+-.+|++.|+..-+...++..-...+ . .....+.+|.++...++|.+|.+.+..|++. .|.
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 344678899998888888874433221 1 2456788999999999999999999999998 664
No 367
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.69 E-value=1.6e+02 Score=28.87 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhc-----CCCCchhHHHHHHHHH
Q 004243 621 QGLARVYYLKNE---LKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQL-----DPLRTYPYRYRAAVLM 692 (766)
Q Consensus 621 ~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~ 692 (766)
..|-.+++..|. |.-|+-.+...-+..|.... ..++..|.+++.. .......|..+|-.+.
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr-----------~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~y 307 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGR-----------PPAEELFKEAITVAKREYSDHHIYPYTYLGGYYY 307 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTS-----------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCC-----------CCHHHHHHHHHHHHHHHhccCCccchhhhhhhhh
Confidence 445556666554 55666666666666554321 2245555555532 3456889999999999
Q ss_pred hCCCHHHHHHHHHHHHh
Q 004243 693 DDQKEVEAVEELSKAIA 709 (766)
Q Consensus 693 ~~g~~~~A~~~~~~al~ 709 (766)
+.+++.+|+..+..+-.
T Consensus 308 R~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 308 RKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHH
Confidence 99999999999988743
No 368
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=22.46 E-value=53 Score=28.19 Aligned_cols=34 Identities=12% Similarity=-0.052 Sum_probs=24.2
Q ss_pred cCChhhHHHHHHHHHhhChHHHHHHHHHHHHhhhh
Q 004243 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRELP 189 (766)
Q Consensus 155 ~~~~~n~~~~~~~a~~~~~~~l~~~~~~~i~~~~~ 189 (766)
++ .+++++++..|...+.+.|.+.|.+++...+.
T Consensus 93 vd-~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 126 (160)
T 2p1m_A 93 ID-QATLFELILAANYLNIKNLLDLTCQTVADMIK 126 (160)
T ss_dssp ---------CHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred CC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 67 89999999999999999999999999987663
No 369
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.29 E-value=2.3e+02 Score=30.99 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=22.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCChhHHHHHHHHHHhh
Q 004243 720 RAAFYESIGDLTSAIRDSQAALCLDPNHMETLDLYNRARDQA 761 (766)
Q Consensus 720 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 761 (766)
.|......|+|.-|.+....++..+|++.++..+++.+.+++
T Consensus 455 ~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l 496 (658)
T 2cfu_A 455 QARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQL 496 (658)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555554444
No 370
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=21.78 E-value=4.9e+02 Score=24.23 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccC---C--CHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Q 004243 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFK---L--SVDCLELRAWLFIA-ADDYESALRDTLAL 411 (766)
Q Consensus 354 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---~--~~~~~~~~a~~~~~-~g~~~~A~~~~~~a 411 (766)
-+..+|.+..+.++|++.+...+++.+.+ + +.+.-.++..+|-. .|....+.+.+..+
T Consensus 30 ~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissi 93 (260)
T 2npm_A 30 SNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSV 93 (260)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 35567888889999999999999999876 4 55555556666644 45566666665443
No 371
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=20.30 E-value=1.8e+02 Score=29.05 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcc---HHHHHHHHHHHHHhccCCHHHHHHHhhhcCHHHHHHHHHHHHhc-----CCCCchhHHHHHHHHH
Q 004243 621 QGLARVYYLKNE---LKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQL-----DPLRTYPYRYRAAVLM 692 (766)
Q Consensus 621 ~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~ 692 (766)
..|-.+++..|. |.-|+-.+..+-+..|.... ..++..|.+++.. .......|..+|-.++
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr-----------~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~y 329 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR-----------PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHC 329 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTC-----------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCCCC-----------CCHHHHHHHHHHHHHHHhccCCccceeecchhhh
Confidence 445556666654 55666666666666655321 1244555555532 3456889999999999
Q ss_pred hCCCHHHHHHHHHHHHh
Q 004243 693 DDQKEVEAVEELSKAIA 709 (766)
Q Consensus 693 ~~g~~~~A~~~~~~al~ 709 (766)
+.+++.+|+..+..+-.
T Consensus 330 R~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 330 RNRNVREALQAWADTAT 346 (550)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHH
Confidence 99999999999988743
Done!