Query 004244
Match_columns 766
No_of_seqs 803 out of 4213
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 20:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.2E-81 2.5E-86 730.8 69.4 655 69-765 63-732 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.2E-75 2.6E-80 680.5 68.0 617 93-753 53-686 (857)
3 PLN03218 maturation of RBCL 1; 100.0 6.2E-72 1.3E-76 634.3 70.2 522 145-690 369-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 7.2E-71 1.6E-75 625.6 71.2 524 216-760 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.6E-65 7.8E-70 578.7 51.4 482 217-764 85-568 (697)
6 PLN03081 pentatricopeptide (PP 100.0 3E-64 6.4E-69 571.2 52.5 476 178-688 84-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.6E-36 7.9E-41 358.7 83.0 643 69-752 239-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-35 4.4E-40 352.3 85.3 650 69-756 205-869 (899)
9 PRK11447 cellulose synthase su 100.0 6.1E-27 1.3E-31 279.2 76.9 649 69-758 40-746 (1157)
10 PRK11447 cellulose synthase su 100.0 1.1E-25 2.4E-30 268.4 74.1 585 145-756 61-703 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 5.6E-21 1.2E-25 217.4 72.5 614 65-755 52-742 (987)
12 PRK09782 bacteriophage N4 rece 100.0 6.7E-21 1.5E-25 216.7 71.8 579 101-755 54-708 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.4E-21 3E-26 196.2 38.0 380 325-735 117-501 (966)
14 KOG2002 TPR-containing nuclear 99.9 9.8E-19 2.1E-23 185.6 57.6 613 70-756 143-801 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 1E-20 2.2E-25 190.1 39.2 445 222-700 51-501 (966)
16 KOG2002 TPR-containing nuclear 99.9 9.6E-19 2.1E-23 185.7 54.6 573 162-754 146-746 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-18 2.7E-23 195.4 51.6 431 255-719 128-572 (615)
18 PRK11788 tetratricopeptide rep 99.9 5E-20 1.1E-24 196.4 36.2 303 438-763 44-357 (389)
19 TIGR00990 3a0801s09 mitochondr 99.9 6E-18 1.3E-22 189.9 53.2 436 221-683 129-571 (615)
20 PRK11788 tetratricopeptide rep 99.9 1.4E-19 3.1E-24 192.9 36.5 299 369-689 45-353 (389)
21 PRK15174 Vi polysaccharide exp 99.9 1.6E-17 3.5E-22 185.5 43.8 361 334-721 15-384 (656)
22 PRK15174 Vi polysaccharide exp 99.9 2.6E-17 5.6E-22 183.9 45.0 387 301-725 17-410 (656)
23 PRK10049 pgaA outer membrane p 99.8 7.6E-17 1.6E-21 184.2 47.4 418 288-719 14-457 (765)
24 KOG0495 HAT repeat protein [RN 99.8 3.2E-13 6.9E-18 137.7 66.1 555 158-763 327-888 (913)
25 PRK10049 pgaA outer membrane p 99.8 4.9E-16 1.1E-20 177.6 52.0 302 253-563 14-339 (765)
26 PRK14574 hmsH outer membrane p 99.8 2.1E-15 4.5E-20 168.7 55.0 445 228-720 43-515 (822)
27 PRK14574 hmsH outer membrane p 99.8 2.3E-14 4.9E-19 160.4 56.6 440 150-605 38-518 (822)
28 KOG2076 RNA polymerase III tra 99.8 1.8E-13 4E-18 145.2 58.4 607 98-749 146-891 (895)
29 KOG4422 Uncharacterized conser 99.8 1E-14 2.2E-19 141.2 43.6 317 158-494 127-463 (625)
30 KOG4422 Uncharacterized conser 99.8 1.5E-14 3.3E-19 140.0 42.2 326 180-529 115-463 (625)
31 KOG0495 HAT repeat protein [RN 99.8 9.3E-13 2E-17 134.4 53.2 509 165-719 365-881 (913)
32 KOG2076 RNA polymerase III tra 99.8 3.4E-12 7.3E-17 135.8 57.0 592 155-757 149-853 (895)
33 KOG2003 TPR repeat-containing 99.7 1.8E-14 3.9E-19 140.3 34.3 490 183-714 200-718 (840)
34 KOG1915 Cell cycle control pro 99.7 5.6E-12 1.2E-16 124.1 51.2 469 219-718 73-585 (677)
35 KOG2003 TPR repeat-containing 99.7 2.2E-13 4.7E-18 132.8 38.6 475 224-739 206-709 (840)
36 KOG1915 Cell cycle control pro 99.7 3.6E-11 7.7E-16 118.5 49.5 469 253-751 72-583 (677)
37 KOG4318 Bicoid mRNA stability 99.6 4E-12 8.6E-17 134.3 38.6 533 169-757 13-598 (1088)
38 PF13429 TPR_15: Tetratricopep 99.6 1.8E-15 4E-20 152.4 13.4 261 469-752 13-276 (280)
39 TIGR00540 hemY_coli hemY prote 99.6 3.4E-12 7.3E-17 135.5 36.0 291 406-718 96-399 (409)
40 PRK10747 putative protoheme IX 99.6 2.9E-12 6.2E-17 135.2 35.2 287 407-718 97-390 (398)
41 KOG2047 mRNA splicing factor [ 99.6 4.2E-09 9.2E-14 108.1 55.7 537 145-746 137-716 (835)
42 KOG0547 Translocase of outer m 99.6 5.2E-12 1.1E-16 125.0 33.2 120 475-597 337-456 (606)
43 KOG0547 Translocase of outer m 99.6 2.6E-11 5.6E-16 120.2 36.4 419 222-681 118-564 (606)
44 KOG1155 Anaphase-promoting com 99.6 3.7E-11 8E-16 118.4 36.4 367 319-718 159-536 (559)
45 TIGR00540 hemY_coli hemY prote 99.6 7.3E-12 1.6E-16 132.9 34.2 290 440-751 95-397 (409)
46 KOG4318 Bicoid mRNA stability 99.6 1.8E-11 3.9E-16 129.5 35.3 486 205-752 11-556 (1088)
47 PRK10747 putative protoheme IX 99.6 1.4E-11 3.1E-16 129.9 35.3 283 441-752 96-389 (398)
48 COG2956 Predicted N-acetylgluc 99.6 1.9E-11 4.1E-16 115.0 30.4 299 443-763 49-357 (389)
49 KOG3785 Uncharacterized conser 99.5 3.8E-10 8.2E-15 107.3 38.6 446 201-692 39-497 (557)
50 KOG1126 DNA-binding cell divis 99.5 2.1E-12 4.7E-17 133.1 25.3 286 445-757 335-624 (638)
51 KOG1155 Anaphase-promoting com 99.5 7.1E-10 1.5E-14 109.5 41.0 366 355-753 160-536 (559)
52 PF13429 TPR_15: Tetratricopep 99.5 4E-14 8.6E-19 142.7 12.2 261 434-717 13-276 (280)
53 KOG1173 Anaphase-promoting com 99.5 1.5E-10 3.3E-15 117.1 37.1 92 218-313 15-106 (611)
54 COG2956 Predicted N-acetylgluc 99.5 6.7E-11 1.5E-15 111.4 31.7 297 291-598 38-347 (389)
55 KOG4162 Predicted calmodulin-b 99.5 4.8E-09 1E-13 110.4 48.7 492 231-754 239-784 (799)
56 KOG1173 Anaphase-promoting com 99.5 7.7E-10 1.7E-14 112.1 40.4 94 179-279 14-107 (611)
57 KOG2047 mRNA splicing factor [ 99.5 7.2E-08 1.6E-12 99.3 54.3 525 183-751 104-685 (835)
58 COG3071 HemY Uncharacterized e 99.5 1.8E-10 3.9E-15 112.1 33.4 287 407-718 97-390 (400)
59 KOG1126 DNA-binding cell divis 99.5 1.2E-11 2.7E-16 127.7 24.4 288 339-651 334-623 (638)
60 COG3071 HemY Uncharacterized e 99.5 1E-09 2.2E-14 107.0 35.3 287 302-598 97-390 (400)
61 KOG3785 Uncharacterized conser 99.5 1.2E-08 2.6E-13 97.4 41.5 451 227-722 30-494 (557)
62 KOG1156 N-terminal acetyltrans 99.4 3.2E-09 6.8E-14 109.5 39.3 438 301-755 19-470 (700)
63 KOG0985 Vesicle coat protein c 99.4 4.4E-07 9.5E-12 97.9 55.7 542 149-736 609-1325(1666)
64 KOG1129 TPR repeat-containing 99.4 3.3E-11 7.1E-16 113.3 20.8 235 498-754 222-459 (478)
65 KOG4162 Predicted calmodulin-b 99.4 7E-08 1.5E-12 101.8 47.3 436 251-720 320-785 (799)
66 KOG1156 N-terminal acetyltrans 99.4 1.1E-07 2.4E-12 98.4 47.3 458 231-716 19-509 (700)
67 TIGR02521 type_IV_pilW type IV 99.3 8.2E-10 1.8E-14 108.4 26.4 200 535-753 32-232 (234)
68 KOG1840 Kinesin light chain [C 99.3 1.4E-09 3E-14 114.1 28.9 238 500-751 200-477 (508)
69 PRK12370 invasion protein regu 99.3 9.6E-10 2.1E-14 121.4 27.9 216 513-754 318-536 (553)
70 KOG0985 Vesicle coat protein c 99.3 9.7E-07 2.1E-11 95.4 48.3 218 151-384 486-749 (1666)
71 TIGR02521 type_IV_pilW type IV 99.3 1.8E-09 3.9E-14 105.9 26.7 201 499-718 31-232 (234)
72 KOG2376 Signal recognition par 99.3 2.1E-07 4.7E-12 95.3 41.0 453 225-748 18-515 (652)
73 PF12569 NARP1: NMDA receptor- 99.3 4.5E-07 9.7E-12 96.8 45.2 50 699-749 466-516 (517)
74 KOG1174 Anaphase-promoting com 99.3 4.8E-07 1E-11 88.5 40.9 190 510-719 311-501 (564)
75 PF13041 PPR_2: PPR repeat fam 99.3 8.4E-12 1.8E-16 87.7 6.3 47 253-299 2-48 (50)
76 KOG1174 Anaphase-promoting com 99.3 2.7E-07 5.9E-12 90.2 38.8 293 371-689 208-504 (564)
77 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.4E-16 87.1 6.4 50 217-266 1-50 (50)
78 KOG1127 TPR repeat-containing 99.3 3.2E-07 6.9E-12 99.3 42.0 453 146-611 492-1010(1238)
79 PF12569 NARP1: NMDA receptor- 99.3 5.1E-07 1.1E-11 96.3 43.6 290 227-527 12-333 (517)
80 PRK12370 invasion protein regu 99.3 5E-09 1.1E-13 115.7 29.7 215 478-719 318-536 (553)
81 PRK11189 lipoprotein NlpI; Pro 99.2 1.1E-08 2.3E-13 103.4 27.2 235 478-736 40-283 (296)
82 KOG2376 Signal recognition par 99.2 1.3E-06 2.8E-11 89.7 41.4 459 185-714 13-516 (652)
83 KOG1840 Kinesin light chain [C 99.2 1.8E-08 3.8E-13 105.9 27.8 198 400-597 247-478 (508)
84 KOG1129 TPR repeat-containing 99.2 3.6E-09 7.8E-14 99.8 19.1 235 464-719 223-459 (478)
85 KOG3616 Selective LIM binding 99.1 4.4E-06 9.5E-11 87.5 41.0 171 153-351 497-675 (1636)
86 KOG3616 Selective LIM binding 99.1 3.5E-06 7.6E-11 88.1 40.2 266 226-528 739-1024(1636)
87 KOG0548 Molecular co-chaperone 99.1 4.6E-07 9.9E-12 92.1 32.8 447 226-735 9-471 (539)
88 KOG3617 WD40 and TPR repeat-co 99.1 1.5E-05 3.3E-10 84.7 44.1 90 462-561 1078-1172(1416)
89 KOG1127 TPR repeat-containing 99.1 4.1E-06 8.9E-11 91.0 39.8 385 183-594 494-909 (1238)
90 KOG3617 WD40 and TPR repeat-co 99.1 2.2E-06 4.7E-11 90.9 36.4 329 216-596 723-1107(1416)
91 KOG0548 Molecular co-chaperone 99.1 4.9E-07 1.1E-11 91.9 30.6 426 262-754 10-456 (539)
92 PRK11189 lipoprotein NlpI; Pro 99.0 2E-07 4.3E-12 94.2 27.3 226 443-693 40-274 (296)
93 COG3063 PilF Tfp pilus assembl 99.0 5.3E-07 1.2E-11 81.8 24.8 199 361-563 37-236 (250)
94 KOG4340 Uncharacterized conser 99.0 1.6E-06 3.5E-11 81.2 28.4 291 222-524 13-335 (459)
95 KOG0624 dsRNA-activated protei 99.0 2E-05 4.4E-10 75.6 35.9 207 437-683 163-370 (504)
96 cd05804 StaR_like StaR_like; a 99.0 3.2E-06 7E-11 88.8 34.9 204 501-718 116-336 (355)
97 COG3063 PilF Tfp pilus assembl 99.0 3.7E-07 8E-12 82.8 23.0 198 501-718 37-236 (250)
98 cd05804 StaR_like StaR_like; a 98.9 7.4E-06 1.6E-10 86.1 35.6 303 431-754 8-337 (355)
99 KOG0624 dsRNA-activated protei 98.9 1.1E-05 2.3E-10 77.5 32.0 328 363-722 42-374 (504)
100 PRK04841 transcriptional regul 98.9 9.6E-06 2.1E-10 96.8 38.8 376 331-719 348-761 (903)
101 PRK04841 transcriptional regul 98.9 8.9E-06 1.9E-10 97.1 37.8 373 366-754 348-761 (903)
102 KOG4340 Uncharacterized conser 98.9 5.5E-06 1.2E-10 77.7 27.4 291 257-559 13-335 (459)
103 PF04733 Coatomer_E: Coatomer 98.9 2E-07 4.4E-12 92.5 19.5 255 439-720 11-267 (290)
104 KOG1128 Uncharacterized conser 98.8 2E-07 4.3E-12 97.9 18.8 222 496-755 395-618 (777)
105 KOG1125 TPR repeat-containing 98.8 5.4E-07 1.2E-11 92.4 20.8 247 475-743 296-561 (579)
106 PF04733 Coatomer_E: Coatomer 98.8 2.5E-07 5.5E-12 91.9 18.2 253 472-755 9-267 (290)
107 KOG1125 TPR repeat-containing 98.8 4.3E-07 9.2E-12 93.2 18.9 231 508-752 294-526 (579)
108 KOG1070 rRNA processing protei 98.7 6.6E-06 1.4E-10 92.5 27.5 233 463-715 1457-1697(1710)
109 PF12854 PPR_1: PPR repeat 98.7 1.4E-08 3.1E-13 63.7 4.1 31 250-280 3-33 (34)
110 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.4E-13 63.1 3.9 34 213-246 1-34 (34)
111 KOG2053 Mitochondrial inherita 98.7 0.0012 2.6E-08 72.0 52.4 95 621-718 438-536 (932)
112 KOG1070 rRNA processing protei 98.7 4E-06 8.6E-11 94.2 23.5 202 535-757 1459-1667(1710)
113 KOG1914 mRNA cleavage and poly 98.7 0.00084 1.8E-08 68.9 41.9 419 179-647 18-500 (656)
114 PRK10370 formate-dependent nit 98.6 4E-06 8.6E-11 78.7 19.2 122 582-722 52-177 (198)
115 PLN02789 farnesyltranstransfer 98.6 3.7E-05 8E-10 77.6 26.8 219 511-751 49-300 (320)
116 KOG1914 mRNA cleavage and poly 98.6 0.0012 2.5E-08 67.9 41.6 187 515-718 309-501 (656)
117 TIGR03302 OM_YfiO outer membra 98.6 5.3E-06 1.1E-10 81.3 19.7 185 532-754 31-233 (235)
118 PLN02789 farnesyltranstransfer 98.5 0.00022 4.7E-09 72.1 28.6 207 474-702 47-268 (320)
119 KOG1128 Uncharacterized conser 98.5 1.1E-05 2.4E-10 85.2 19.6 211 434-681 403-614 (777)
120 PRK15359 type III secretion sy 98.5 5.6E-06 1.2E-10 73.4 15.3 104 627-734 32-136 (144)
121 PRK15179 Vi polysaccharide bio 98.5 3.4E-05 7.5E-10 85.8 24.8 135 565-719 82-218 (694)
122 COG5010 TadD Flp pilus assembl 98.5 4.4E-05 9.6E-10 71.2 20.8 160 538-717 70-230 (257)
123 PRK15359 type III secretion sy 98.5 3.7E-06 8.1E-11 74.5 13.3 111 639-755 13-123 (144)
124 COG5010 TadD Flp pilus assembl 98.4 4.2E-05 9.1E-10 71.4 19.9 157 573-748 70-226 (257)
125 PRK15179 Vi polysaccharide bio 98.4 3E-05 6.4E-10 86.3 22.5 122 627-753 94-217 (694)
126 TIGR03302 OM_YfiO outer membra 98.4 3.3E-05 7.1E-10 75.7 20.4 194 497-719 31-233 (235)
127 KOG2053 Mitochondrial inherita 98.4 0.0067 1.4E-07 66.4 47.2 223 158-390 21-257 (932)
128 PRK10370 formate-dependent nit 98.4 4E-05 8.6E-10 72.0 19.0 121 632-756 52-176 (198)
129 KOG3060 Uncharacterized conser 98.3 0.00014 3.1E-09 67.2 20.6 191 510-720 23-222 (289)
130 PRK14720 transcript cleavage f 98.3 0.00038 8.2E-09 78.4 27.1 236 393-700 30-268 (906)
131 TIGR02552 LcrH_SycD type III s 98.3 1.4E-05 3E-10 70.5 13.2 111 641-755 5-116 (135)
132 KOG3081 Vesicle coat complex C 98.3 0.00071 1.5E-08 63.3 23.1 255 437-719 16-272 (299)
133 COG4783 Putative Zn-dependent 98.2 0.0002 4.3E-09 72.8 21.1 185 496-719 271-455 (484)
134 KOG3060 Uncharacterized conser 98.2 0.00092 2E-08 62.1 23.1 189 475-683 23-220 (289)
135 KOG3081 Vesicle coat complex C 98.2 0.0017 3.6E-08 60.9 24.8 251 153-423 15-271 (299)
136 COG4783 Putative Zn-dependent 98.2 0.00049 1.1E-08 70.1 22.7 139 473-648 315-454 (484)
137 PRK14720 transcript cleavage f 98.2 0.00063 1.4E-08 76.7 26.0 239 216-510 28-268 (906)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.5E-05 1.4E-09 77.3 14.9 122 624-751 174-295 (395)
139 PF09976 TPR_21: Tetratricopep 98.1 0.00019 4.1E-09 63.9 15.6 117 631-750 23-144 (145)
140 KOG1130 Predicted G-alpha GTPa 98.0 0.0001 2.2E-09 72.6 13.7 127 627-753 203-344 (639)
141 KOG0550 Molecular chaperone (D 98.0 0.00042 9.2E-09 68.7 16.9 280 437-759 57-356 (486)
142 PF09976 TPR_21: Tetratricopep 98.0 0.00032 6.9E-09 62.5 15.0 119 581-715 23-144 (145)
143 PF12895 Apc3: Anaphase-promot 97.9 2.2E-05 4.8E-10 62.3 6.4 81 667-749 2-83 (84)
144 TIGR00756 PPR pentatricopeptid 97.9 1.2E-05 2.5E-10 51.4 3.7 30 257-286 3-32 (35)
145 KOG0553 TPR repeat-containing 97.9 0.00019 4E-09 68.5 12.8 103 627-734 89-193 (304)
146 TIGR00756 PPR pentatricopeptid 97.9 1.3E-05 2.9E-10 51.1 3.7 34 221-254 2-35 (35)
147 PRK15363 pathogenicity island 97.9 0.00024 5.2E-09 61.9 12.2 89 660-751 41-130 (157)
148 TIGR02552 LcrH_SycD type III s 97.9 0.00055 1.2E-08 60.2 15.2 93 468-562 21-113 (135)
149 cd00189 TPR Tetratricopeptide 97.8 0.00023 4.9E-09 57.8 10.8 95 657-753 3-97 (100)
150 PF13812 PPR_3: Pentatricopept 97.8 3.1E-05 6.8E-10 49.0 4.0 28 222-249 4-31 (34)
151 PF13812 PPR_3: Pentatricopept 97.8 3.5E-05 7.5E-10 48.8 4.0 33 255-287 2-34 (34)
152 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00042 9.1E-09 59.3 11.6 94 624-719 7-106 (119)
153 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0011 2.4E-08 68.4 16.2 123 468-596 173-295 (395)
154 PF08579 RPM2: Mitochondrial r 97.7 0.00041 8.9E-09 55.8 9.6 79 153-231 32-116 (120)
155 COG3898 Uncharacterized membra 97.7 0.07 1.5E-06 53.1 30.2 248 476-753 132-392 (531)
156 KOG2041 WD40 repeat protein [G 97.7 0.12 2.6E-06 55.2 29.8 207 286-525 689-904 (1189)
157 PF12895 Apc3: Anaphase-promot 97.7 8E-05 1.7E-09 59.1 5.3 81 632-715 2-84 (84)
158 PRK02603 photosystem I assembl 97.7 0.0011 2.4E-08 61.0 13.6 101 653-754 34-150 (172)
159 KOG0550 Molecular chaperone (D 97.7 0.031 6.6E-07 56.0 23.7 110 578-701 258-369 (486)
160 PRK15363 pathogenicity island 97.6 0.0012 2.5E-08 57.7 12.2 90 627-719 43-133 (157)
161 PLN03088 SGT1, suppressor of 97.6 0.0012 2.7E-08 68.3 14.8 102 627-733 10-113 (356)
162 KOG2041 WD40 repeat protein [G 97.6 0.056 1.2E-06 57.6 26.0 202 251-489 689-903 (1189)
163 COG4235 Cytochrome c biogenesi 97.6 0.0021 4.5E-08 62.0 14.7 122 637-762 140-265 (287)
164 PF01535 PPR: PPR repeat; Int 97.6 6.4E-05 1.4E-09 46.3 3.0 25 257-281 3-27 (31)
165 PF12688 TPR_5: Tetratrico pep 97.6 0.0017 3.7E-08 54.7 12.4 89 627-717 9-103 (120)
166 PF13414 TPR_11: TPR repeat; P 97.6 0.00034 7.3E-09 53.0 7.5 63 689-752 3-66 (69)
167 COG4700 Uncharacterized protei 97.6 0.014 3.1E-07 51.6 18.0 134 566-716 86-220 (251)
168 PF14938 SNAP: Soluble NSF att 97.6 0.0058 1.2E-07 61.4 18.5 196 508-750 44-263 (282)
169 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0017 3.8E-08 55.4 12.9 100 655-756 3-108 (119)
170 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.5E-08 68.6 13.3 124 389-512 61-186 (429)
171 PF01535 PPR: PPR repeat; Int 97.6 7.9E-05 1.7E-09 45.9 3.1 31 220-250 1-31 (31)
172 PLN03088 SGT1, suppressor of 97.5 0.0011 2.3E-08 68.8 12.9 94 660-755 8-101 (356)
173 PF07079 DUF1347: Protein of u 97.5 0.14 3E-06 52.2 44.7 446 230-715 17-521 (549)
174 COG4700 Uncharacterized protei 97.5 0.019 4.2E-07 50.8 17.8 119 627-749 97-218 (251)
175 cd00189 TPR Tetratricopeptide 97.5 0.0014 3.1E-08 52.9 10.9 91 627-719 8-98 (100)
176 PF14938 SNAP: Soluble NSF att 97.5 0.0092 2E-07 59.9 18.4 112 627-754 102-226 (282)
177 PF13432 TPR_16: Tetratricopep 97.5 0.00048 1E-08 51.4 7.0 56 696-752 4-59 (65)
178 PF10037 MRP-S27: Mitochondria 97.5 0.002 4.4E-08 66.8 13.7 124 424-547 61-186 (429)
179 KOG0553 TPR repeat-containing 97.4 0.0011 2.5E-08 63.3 10.5 90 662-754 89-179 (304)
180 KOG1130 Predicted G-alpha GTPa 97.4 0.004 8.7E-08 61.8 13.7 133 571-718 197-344 (639)
181 PF07079 DUF1347: Protein of u 97.4 0.22 4.9E-06 50.8 41.9 435 156-610 16-531 (549)
182 PRK10153 DNA-binding transcrip 97.4 0.014 3.1E-07 63.3 19.1 86 635-722 400-486 (517)
183 PF13414 TPR_11: TPR repeat; P 97.4 0.00088 1.9E-08 50.7 7.3 66 653-719 2-68 (69)
184 PRK10866 outer membrane biogen 97.4 0.094 2E-06 51.0 23.1 59 694-752 180-240 (243)
185 PF08579 RPM2: Mitochondrial r 97.3 0.0029 6.2E-08 51.1 10.0 72 263-334 34-114 (120)
186 PRK10866 outer membrane biogen 97.3 0.055 1.2E-06 52.6 21.3 176 365-560 38-238 (243)
187 PF06239 ECSIT: Evolutionarily 97.3 0.0029 6.3E-08 57.9 11.3 86 179-264 45-148 (228)
188 CHL00033 ycf3 photosystem I as 97.3 0.0035 7.5E-08 57.5 12.3 114 635-749 15-138 (168)
189 PF05843 Suf: Suppressor of fo 97.2 0.0057 1.2E-07 61.1 13.7 129 501-647 3-135 (280)
190 PF13432 TPR_16: Tetratricopep 97.2 0.0022 4.7E-08 47.8 8.0 58 660-719 3-61 (65)
191 PF06239 ECSIT: Evolutionarily 97.2 0.006 1.3E-07 55.9 11.9 105 216-339 44-153 (228)
192 PRK10803 tol-pal system protei 97.2 0.005 1.1E-07 60.3 12.4 97 657-755 146-248 (263)
193 PRK02603 photosystem I assembl 97.2 0.021 4.6E-07 52.5 15.6 82 467-549 38-121 (172)
194 PF14559 TPR_19: Tetratricopep 97.1 0.0017 3.8E-08 48.8 6.9 53 666-719 3-55 (68)
195 KOG1538 Uncharacterized conser 97.1 0.038 8.3E-07 58.3 18.2 56 498-562 746-801 (1081)
196 PF12688 TPR_5: Tetratrico pep 97.1 0.017 3.8E-07 48.6 12.9 95 658-752 5-103 (120)
197 CHL00033 ycf3 photosystem I as 97.1 0.022 4.7E-07 52.2 15.0 86 627-714 43-138 (168)
198 PF14559 TPR_19: Tetratricopep 97.1 0.00088 1.9E-08 50.5 4.8 56 699-755 1-56 (68)
199 PF05843 Suf: Suppressor of fo 97.0 0.016 3.4E-07 58.0 14.4 84 633-718 50-136 (280)
200 PRK10153 DNA-binding transcrip 97.0 0.04 8.7E-07 59.9 18.3 48 632-681 433-480 (517)
201 PRK15331 chaperone protein Sic 97.0 0.0066 1.4E-07 53.3 9.6 92 624-718 42-134 (165)
202 PF13525 YfiO: Outer membrane 96.9 0.13 2.8E-06 48.7 18.8 58 366-423 12-71 (203)
203 COG3898 Uncharacterized membra 96.8 0.62 1.3E-05 46.7 33.2 282 372-684 97-393 (531)
204 PF13525 YfiO: Outer membrane 96.8 0.12 2.6E-06 49.0 17.6 51 694-744 146-198 (203)
205 PRK10803 tol-pal system protei 96.8 0.029 6.3E-07 55.0 13.3 94 627-722 151-250 (263)
206 PF03704 BTAD: Bacterial trans 96.8 0.057 1.2E-06 48.0 14.4 69 622-692 65-139 (146)
207 PF13371 TPR_9: Tetratricopept 96.7 0.0051 1.1E-07 47.1 6.5 58 662-720 3-60 (73)
208 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.92 2E-05 46.4 36.0 127 536-681 399-529 (660)
209 KOG1941 Acetylcholine receptor 96.7 0.6 1.3E-05 46.3 21.0 236 501-746 85-353 (518)
210 KOG2114 Vacuolar assembly/sort 96.6 1.5 3.2E-05 48.6 25.5 146 258-418 338-487 (933)
211 COG4235 Cytochrome c biogenesi 96.6 0.082 1.8E-06 51.3 14.9 46 635-682 209-255 (287)
212 PRK11906 transcriptional regul 96.6 0.11 2.4E-06 53.8 16.3 156 585-750 274-433 (458)
213 KOG0543 FKBP-type peptidyl-pro 96.6 0.082 1.8E-06 53.3 15.0 99 655-755 258-357 (397)
214 PF13424 TPR_12: Tetratricopep 96.5 0.006 1.3E-07 47.4 5.8 61 656-716 7-73 (78)
215 PF13424 TPR_12: Tetratricopep 96.5 0.011 2.5E-07 45.8 7.1 63 690-752 6-74 (78)
216 PF13371 TPR_9: Tetratricopept 96.5 0.019 4.2E-07 43.8 8.0 55 627-683 3-58 (73)
217 PRK15331 chaperone protein Sic 96.4 0.12 2.5E-06 45.7 13.3 93 659-753 42-134 (165)
218 KOG2796 Uncharacterized conser 96.4 0.93 2E-05 42.9 19.6 132 291-423 179-315 (366)
219 PF04840 Vps16_C: Vps16, C-ter 96.4 1.4 2.9E-05 44.8 28.1 106 572-712 180-285 (319)
220 COG0457 NrfG FOG: TPR repeat [ 96.3 1.1 2.4E-05 43.1 30.0 222 477-719 36-266 (291)
221 PF13281 DUF4071: Domain of un 96.3 0.5 1.1E-05 48.3 19.0 174 540-721 147-337 (374)
222 PF04840 Vps16_C: Vps16, C-ter 96.3 1.5 3.3E-05 44.4 26.8 80 505-594 183-262 (319)
223 KOG2610 Uncharacterized conser 96.2 0.098 2.1E-06 51.0 12.4 163 580-760 114-283 (491)
224 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.028 6.1E-07 57.9 9.0 99 653-757 74-178 (453)
225 PF09613 HrpB1_HrpK: Bacterial 96.0 0.3 6.5E-06 43.0 13.8 116 623-745 14-130 (160)
226 COG1729 Uncharacterized protei 96.0 0.11 2.4E-06 49.8 12.0 99 656-756 144-247 (262)
227 PF10300 DUF3808: Protein of u 96.0 0.47 1E-05 51.2 18.4 184 555-754 178-377 (468)
228 PF04184 ST7: ST7 protein; In 96.0 0.11 2.3E-06 53.9 12.4 68 658-726 263-332 (539)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.076 1.7E-06 54.9 10.9 61 621-683 77-141 (453)
230 KOG1941 Acetylcholine receptor 95.9 0.38 8.2E-06 47.6 14.9 47 474-520 16-64 (518)
231 PF13281 DUF4071: Domain of un 95.8 1.5 3.3E-05 44.9 19.9 94 470-563 147-255 (374)
232 KOG4555 TPR repeat-containing 95.8 0.46 1E-05 39.7 13.0 92 627-720 51-146 (175)
233 KOG2280 Vacuolar assembly/sort 95.7 4.2 9.1E-05 44.7 31.7 100 317-419 425-532 (829)
234 PRK11906 transcriptional regul 95.7 0.3 6.6E-06 50.7 14.5 120 634-755 273-403 (458)
235 COG4105 ComL DNA uptake lipopr 95.7 2 4.4E-05 41.0 21.7 72 369-440 44-117 (254)
236 KOG1920 IkappaB kinase complex 95.6 5.3 0.00012 46.4 24.6 79 627-716 973-1053(1265)
237 PF10300 DUF3808: Protein of u 95.6 0.46 1E-05 51.3 16.4 162 539-717 193-375 (468)
238 KOG4555 TPR repeat-containing 95.6 0.24 5.1E-06 41.3 10.5 94 661-755 50-146 (175)
239 KOG1538 Uncharacterized conser 95.5 0.84 1.8E-05 48.7 17.0 84 153-244 563-657 (1081)
240 PF03704 BTAD: Bacterial trans 95.5 0.079 1.7E-06 47.1 8.7 69 502-571 65-138 (146)
241 PF13428 TPR_14: Tetratricopep 95.5 0.038 8.2E-07 37.1 5.0 40 691-731 3-42 (44)
242 KOG1585 Protein required for f 95.4 2.4 5.1E-05 39.9 17.5 24 536-559 93-116 (308)
243 COG1729 Uncharacterized protei 95.4 0.44 9.5E-06 45.8 13.4 96 628-723 150-249 (262)
244 KOG2610 Uncharacterized conser 95.4 0.48 1E-05 46.4 13.5 153 510-681 114-274 (491)
245 KOG2280 Vacuolar assembly/sort 95.3 5.7 0.00012 43.7 35.9 344 211-594 424-795 (829)
246 KOG2114 Vacuolar assembly/sort 95.3 6.3 0.00014 44.0 25.8 179 221-420 336-516 (933)
247 COG0457 NrfG FOG: TPR repeat [ 95.3 2.9 6.3E-05 40.0 32.0 200 464-681 59-263 (291)
248 KOG1585 Protein required for f 95.2 2.6 5.7E-05 39.6 17.2 56 657-713 193-251 (308)
249 KOG1258 mRNA processing protei 95.2 5.5 0.00012 42.8 35.3 191 462-669 295-490 (577)
250 smart00299 CLH Clathrin heavy 95.2 0.98 2.1E-05 39.7 14.6 125 150-300 11-136 (140)
251 COG4105 ComL DNA uptake lipopr 95.1 3.2 6.9E-05 39.7 20.2 52 696-748 174-228 (254)
252 KOG0543 FKBP-type peptidyl-pro 95.0 0.18 3.9E-06 51.0 10.0 94 661-755 215-322 (397)
253 PF13431 TPR_17: Tetratricopep 95.0 0.029 6.4E-07 35.0 3.0 32 712-744 2-33 (34)
254 PF13512 TPR_18: Tetratricopep 94.8 0.46 9.9E-06 41.0 10.7 92 661-753 17-128 (142)
255 COG3118 Thioredoxin domain-con 94.8 3.1 6.7E-05 40.6 17.1 120 335-457 145-264 (304)
256 COG3118 Thioredoxin domain-con 94.6 4.8 0.0001 39.3 18.1 145 225-373 140-286 (304)
257 PF04184 ST7: ST7 protein; In 94.6 2.4 5.1E-05 44.5 16.9 56 627-682 267-323 (539)
258 KOG1920 IkappaB kinase complex 94.6 12 0.00026 43.7 23.7 128 151-282 682-820 (1265)
259 KOG2796 Uncharacterized conser 94.5 4.5 9.9E-05 38.5 23.7 59 363-421 181-239 (366)
260 PF08631 SPO22: Meiosis protei 94.4 6 0.00013 39.6 25.6 101 500-603 85-191 (278)
261 PF12921 ATP13: Mitochondrial 94.4 0.64 1.4E-05 39.7 10.7 51 529-579 47-98 (126)
262 PF12921 ATP13: Mitochondrial 94.4 0.57 1.2E-05 40.0 10.4 48 460-507 48-96 (126)
263 TIGR02561 HrpB1_HrpK type III 94.4 1.5 3.3E-05 38.0 12.6 96 626-725 17-113 (153)
264 COG4649 Uncharacterized protei 94.2 2.6 5.6E-05 37.4 13.8 129 629-757 68-200 (221)
265 COG2976 Uncharacterized protei 94.2 2.2 4.8E-05 38.8 13.7 93 625-719 95-189 (207)
266 KOG3941 Intermediate in Toll s 94.2 0.39 8.5E-06 45.8 9.5 31 200-230 88-118 (406)
267 COG4785 NlpI Lipoprotein NlpI, 94.1 4.8 0.00011 37.2 17.2 54 509-563 75-128 (297)
268 smart00299 CLH Clathrin heavy 94.0 3.9 8.4E-05 35.8 15.8 43 224-267 12-54 (140)
269 PF08631 SPO22: Meiosis protei 94.0 7.3 0.00016 38.9 26.0 62 536-598 86-150 (278)
270 KOG1550 Extracellular protein 93.9 13 0.00028 41.4 26.4 80 409-494 227-323 (552)
271 COG2909 MalT ATP-dependent tra 93.7 15 0.00033 41.6 23.9 89 510-598 426-526 (894)
272 PF04053 Coatomer_WDAD: Coatom 93.6 1.4 3.1E-05 46.8 13.9 27 358-384 346-372 (443)
273 PF13512 TPR_18: Tetratricopep 93.5 1.9 4.1E-05 37.3 11.7 72 627-700 18-93 (142)
274 PF13170 DUF4003: Protein of u 93.4 5.3 0.00011 40.1 16.7 151 551-714 79-242 (297)
275 PF09205 DUF1955: Domain of un 93.3 4.4 9.6E-05 34.2 14.3 61 503-564 90-150 (161)
276 PF04053 Coatomer_WDAD: Coatom 93.3 1.9 4E-05 46.0 14.1 128 397-557 298-425 (443)
277 KOG1586 Protein required for f 93.0 7.9 0.00017 36.4 16.4 73 509-597 24-101 (288)
278 COG4649 Uncharacterized protei 93.0 5.9 0.00013 35.2 13.9 124 229-352 68-195 (221)
279 KOG1550 Extracellular protein 92.9 18 0.0004 40.2 26.9 17 478-494 378-394 (552)
280 KOG3941 Intermediate in Toll s 92.8 0.78 1.7E-05 43.9 9.1 114 204-339 54-173 (406)
281 KOG4234 TPR repeat-containing 92.5 1.5 3.2E-05 39.9 9.9 94 627-723 103-202 (271)
282 PF09205 DUF1955: Domain of un 92.3 6.3 0.00014 33.3 16.4 83 631-719 68-150 (161)
283 KOG1258 mRNA processing protei 92.1 20 0.00043 38.7 35.8 133 253-388 44-180 (577)
284 PF13170 DUF4003: Protein of u 91.9 6.4 0.00014 39.5 15.0 129 200-330 78-223 (297)
285 PF13428 TPR_14: Tetratricopep 91.9 0.48 1E-05 31.6 5.0 38 656-695 3-41 (44)
286 PF04097 Nic96: Nup93/Nic96; 91.8 26 0.00057 39.5 21.9 41 295-336 117-157 (613)
287 PF02259 FAT: FAT domain; Int 91.8 11 0.00024 39.1 17.9 68 688-755 145-215 (352)
288 PF10602 RPN7: 26S proteasome 91.7 2 4.3E-05 39.4 10.4 96 655-750 37-139 (177)
289 PF02259 FAT: FAT domain; Int 91.3 20 0.00044 37.2 24.3 64 567-647 144-212 (352)
290 COG2909 MalT ATP-dependent tra 91.2 32 0.00068 39.2 27.8 90 474-563 425-526 (894)
291 PF13176 TPR_7: Tetratricopept 91.1 0.48 1E-05 30.0 4.1 25 692-716 2-26 (36)
292 COG2976 Uncharacterized protei 91.1 2.5 5.5E-05 38.4 9.9 92 659-754 94-189 (207)
293 KOG1464 COP9 signalosome, subu 91.0 15 0.00033 35.2 18.3 165 469-644 70-256 (440)
294 KOG2066 Vacuolar assembly/sort 91.0 30 0.00066 38.6 27.5 102 331-441 363-467 (846)
295 PF07035 Mic1: Colon cancer-as 90.8 12 0.00026 33.6 15.4 29 277-305 17-45 (167)
296 PF13176 TPR_7: Tetratricopept 90.7 0.45 9.8E-06 30.1 3.7 26 656-681 1-26 (36)
297 COG3629 DnrI DNA-binding trans 90.5 3 6.4E-05 40.9 10.7 78 500-578 154-236 (280)
298 PF13431 TPR_17: Tetratricopep 90.2 0.29 6.4E-06 30.5 2.4 22 653-674 12-33 (34)
299 COG0790 FOG: TPR repeat, SEL1 90.1 23 0.00049 35.7 19.7 77 672-755 173-268 (292)
300 PF07719 TPR_2: Tetratricopept 90.1 0.9 2E-05 28.0 4.7 28 692-719 4-31 (34)
301 COG5107 RNA14 Pre-mRNA 3'-end 90.0 26 0.00057 36.4 42.2 132 499-648 397-531 (660)
302 KOG4234 TPR repeat-containing 89.8 8.6 0.00019 35.1 12.0 93 662-756 103-200 (271)
303 COG3629 DnrI DNA-binding trans 89.7 3.1 6.7E-05 40.8 10.1 77 620-698 154-236 (280)
304 PF07035 Mic1: Colon cancer-as 89.3 16 0.00034 32.9 15.6 134 205-352 15-148 (167)
305 KOG2396 HAT (Half-A-TPR) repea 89.1 33 0.00072 36.3 40.4 89 627-718 468-559 (568)
306 PF00515 TPR_1: Tetratricopept 88.9 1.2 2.6E-05 27.5 4.6 29 691-719 3-31 (34)
307 COG3947 Response regulator con 88.8 25 0.00054 34.4 16.5 56 695-751 285-340 (361)
308 PF10602 RPN7: 26S proteasome 88.4 6.5 0.00014 36.0 10.9 60 291-350 38-99 (177)
309 PF09986 DUF2225: Uncharacteri 87.5 6.8 0.00015 37.2 10.7 92 666-757 89-198 (214)
310 KOG4648 Uncharacterized conser 87.3 1.8 3.9E-05 42.7 6.6 91 627-720 105-196 (536)
311 PF10345 Cohesin_load: Cohesin 86.8 61 0.0013 36.7 39.9 196 322-527 28-253 (608)
312 PF04097 Nic96: Nup93/Nic96; 86.5 63 0.0014 36.5 24.4 22 664-688 515-536 (613)
313 PRK09687 putative lyase; Provi 86.4 37 0.00081 33.9 28.2 231 179-437 35-275 (280)
314 KOG4570 Uncharacterized conser 86.3 8.9 0.00019 37.7 10.6 49 479-527 115-163 (418)
315 PF00515 TPR_1: Tetratricopept 86.1 1.6 3.5E-05 26.9 4.0 31 724-754 1-31 (34)
316 COG4785 NlpI Lipoprotein NlpI, 85.9 30 0.00065 32.3 17.1 29 725-753 238-266 (297)
317 PF07719 TPR_2: Tetratricopept 85.9 1.7 3.6E-05 26.7 4.0 30 725-754 2-31 (34)
318 KOG2471 TPR repeat-containing 85.8 19 0.0004 37.8 13.1 109 627-736 248-381 (696)
319 PRK15180 Vi polysaccharide bio 85.7 7.1 0.00015 40.5 10.1 129 630-762 300-429 (831)
320 KOG0890 Protein kinase of the 85.7 1.2E+02 0.0026 39.0 27.0 322 364-721 1388-1734(2382)
321 KOG2062 26S proteasome regulat 85.7 65 0.0014 35.9 33.7 121 628-752 510-634 (929)
322 KOG4648 Uncharacterized conser 85.7 3.8 8.3E-05 40.5 7.9 90 661-753 104-194 (536)
323 KOG4570 Uncharacterized conser 85.2 9.2 0.0002 37.6 10.1 50 632-681 113-162 (418)
324 PF09613 HrpB1_HrpK: Bacterial 84.8 28 0.00061 30.9 13.2 49 231-283 22-73 (160)
325 KOG2396 HAT (Half-A-TPR) repea 84.6 59 0.0013 34.5 41.2 100 651-752 456-558 (568)
326 KOG4642 Chaperone-dependent E3 84.0 18 0.00038 34.3 11.0 104 627-734 18-127 (284)
327 KOG0276 Vesicle coat complex C 82.6 19 0.00041 38.9 11.9 148 232-419 599-746 (794)
328 PF13374 TPR_10: Tetratricopep 82.2 2.8 6.1E-05 27.2 4.1 28 725-752 3-30 (42)
329 KOG2066 Vacuolar assembly/sort 81.6 98 0.0021 34.9 27.5 102 226-336 363-467 (846)
330 KOG1464 COP9 signalosome, subu 81.6 52 0.0011 31.7 22.6 281 318-607 20-340 (440)
331 PF10345 Cohesin_load: Cohesin 81.1 1E+02 0.0023 34.9 44.7 193 545-751 372-604 (608)
332 KOG2297 Predicted translation 81.0 60 0.0013 32.0 17.4 73 302-379 268-341 (412)
333 PRK09687 putative lyase; Provi 81.0 63 0.0014 32.2 28.2 58 498-562 205-262 (280)
334 PF13174 TPR_6: Tetratricopept 80.6 2.1 4.5E-05 26.0 2.8 24 729-752 5-28 (33)
335 PF13181 TPR_8: Tetratricopept 80.2 3.9 8.6E-05 25.0 4.0 27 726-752 3-29 (34)
336 PF07575 Nucleopor_Nup85: Nup8 80.2 1.1E+02 0.0023 34.4 18.2 26 145-171 148-173 (566)
337 PF13374 TPR_10: Tetratricopep 80.1 3.8 8.1E-05 26.5 4.2 26 656-681 4-29 (42)
338 COG5159 RPN6 26S proteasome re 80.0 62 0.0013 31.6 14.0 51 435-485 9-66 (421)
339 PF13181 TPR_8: Tetratricopept 79.9 3.5 7.7E-05 25.3 3.8 29 691-719 3-31 (34)
340 KOG0276 Vesicle coat complex C 79.8 26 0.00055 37.9 11.7 98 370-488 648-745 (794)
341 KOG1586 Protein required for f 79.6 57 0.0012 30.9 20.9 18 631-648 166-183 (288)
342 cd00923 Cyt_c_Oxidase_Va Cytoc 79.6 13 0.00029 29.5 7.3 46 517-562 25-70 (103)
343 PF13174 TPR_6: Tetratricopept 78.7 4.1 8.9E-05 24.6 3.8 26 694-719 5-30 (33)
344 PF07575 Nucleopor_Nup85: Nup8 78.3 74 0.0016 35.7 16.0 28 219-247 149-176 (566)
345 PF11207 DUF2989: Protein of u 77.8 25 0.00055 32.5 9.8 72 671-743 123-197 (203)
346 PF11207 DUF2989: Protein of u 77.6 21 0.00046 33.0 9.3 16 500-515 179-194 (203)
347 PF07721 TPR_4: Tetratricopept 76.8 2.9 6.2E-05 24.0 2.4 22 727-748 4-25 (26)
348 PF02284 COX5A: Cytochrome c o 76.7 35 0.00077 27.5 8.9 47 517-563 28-74 (108)
349 PF09986 DUF2225: Uncharacteri 76.7 52 0.0011 31.2 12.1 91 629-719 87-195 (214)
350 cd00923 Cyt_c_Oxidase_Va Cytoc 76.2 19 0.00041 28.7 7.3 47 672-718 25-71 (103)
351 KOG0890 Protein kinase of the 75.7 2.6E+02 0.0056 36.4 34.7 63 690-755 1671-1733(2382)
352 TIGR02508 type_III_yscG type I 74.9 42 0.00092 27.0 9.2 49 229-283 49-97 (115)
353 KOG3364 Membrane protein invol 74.7 49 0.0011 28.4 9.8 68 651-719 29-101 (149)
354 COG1747 Uncharacterized N-term 74.5 1.3E+02 0.0028 32.3 25.6 63 463-528 65-127 (711)
355 COG1747 Uncharacterized N-term 74.3 1.3E+02 0.0028 32.3 24.8 170 497-683 64-234 (711)
356 COG4455 ImpE Protein of avirul 74.2 24 0.00052 32.9 8.6 74 623-698 5-81 (273)
357 PF02284 COX5A: Cytochrome c o 73.5 22 0.00047 28.7 7.1 47 307-353 28-74 (108)
358 PHA02875 ankyrin repeat protei 73.5 90 0.0019 33.3 14.8 49 226-278 39-89 (413)
359 COG5159 RPN6 26S proteasome re 73.2 97 0.0021 30.3 15.8 54 504-557 8-68 (421)
360 KOG4507 Uncharacterized conser 73.2 18 0.00039 38.8 8.5 104 630-735 618-721 (886)
361 TIGR03504 FimV_Cterm FimV C-te 72.2 4.8 0.0001 26.8 2.8 23 695-717 5-27 (44)
362 TIGR02561 HrpB1_HrpK type III 72.1 69 0.0015 28.1 12.9 48 232-283 23-73 (153)
363 KOG2471 TPR repeat-containing 71.7 1.3E+02 0.0027 32.1 13.8 106 579-701 250-381 (696)
364 PF10579 Rapsyn_N: Rapsyn N-te 71.0 7.9 0.00017 29.5 4.0 49 666-714 18-68 (80)
365 PF00637 Clathrin: Region in C 70.7 2 4.3E-05 37.8 1.1 54 225-278 13-66 (143)
366 COG0790 FOG: TPR repeat, SEL1 70.7 1.2E+02 0.0026 30.4 23.3 18 632-649 204-221 (292)
367 KOG4521 Nuclear pore complex, 70.5 1.7E+02 0.0037 34.7 15.7 116 625-747 989-1125(1480)
368 PHA02875 ankyrin repeat protei 69.7 1.1E+02 0.0023 32.7 14.3 9 265-273 10-18 (413)
369 PF00637 Clathrin: Region in C 69.6 2.9 6.2E-05 36.8 1.8 83 625-714 13-95 (143)
370 PF06552 TOM20_plant: Plant sp 68.7 38 0.00083 30.7 8.5 111 635-754 7-137 (186)
371 COG3947 Response regulator con 67.9 1.3E+02 0.0028 29.7 16.8 61 501-562 281-341 (361)
372 TIGR03504 FimV_Cterm FimV C-te 67.5 13 0.00029 24.7 4.1 24 660-683 5-28 (44)
373 PF04190 DUF410: Protein of un 67.5 1.3E+02 0.0029 29.6 15.6 81 653-753 89-170 (260)
374 COG4455 ImpE Protein of avirul 67.4 89 0.0019 29.4 10.6 24 624-647 40-63 (273)
375 PF10579 Rapsyn_N: Rapsyn N-te 67.4 23 0.00051 27.0 5.8 46 631-676 18-65 (80)
376 PF06552 TOM20_plant: Plant sp 66.4 28 0.00061 31.6 7.2 82 670-753 7-109 (186)
377 PF08424 NRDE-2: NRDE-2, neces 65.6 1.6E+02 0.0036 30.0 14.8 121 635-757 47-187 (321)
378 smart00028 TPR Tetratricopepti 65.6 13 0.00029 21.4 3.9 22 695-716 7-28 (34)
379 PF07163 Pex26: Pex26 protein; 65.3 76 0.0017 31.1 10.2 21 332-352 126-146 (309)
380 KOG3364 Membrane protein invol 63.0 56 0.0012 28.1 7.8 69 686-754 29-101 (149)
381 KOG1308 Hsp70-interacting prot 62.0 12 0.00026 37.4 4.5 119 629-752 124-243 (377)
382 TIGR02508 type_III_yscG type I 61.5 85 0.0018 25.3 8.4 51 473-529 48-98 (115)
383 PF14561 TPR_20: Tetratricopep 60.3 37 0.00081 26.9 6.3 64 687-750 20-85 (90)
384 KOG2062 26S proteasome regulat 60.2 3E+02 0.0064 31.2 39.7 123 578-717 510-634 (929)
385 KOG4507 Uncharacterized conser 59.8 37 0.00081 36.6 7.7 90 665-755 618-707 (886)
386 COG4976 Predicted methyltransf 59.6 22 0.00048 33.4 5.5 50 630-681 6-56 (287)
387 KOG0551 Hsp90 co-chaperone CNS 58.1 64 0.0014 32.4 8.5 88 660-748 87-177 (390)
388 PF08424 NRDE-2: NRDE-2, neces 57.9 2.2E+02 0.0049 29.0 16.7 125 516-650 48-185 (321)
389 PF09670 Cas_Cas02710: CRISPR- 57.3 1.4E+02 0.0029 31.5 11.7 56 627-683 139-198 (379)
390 KOG4642 Chaperone-dependent E3 57.2 60 0.0013 30.9 7.8 89 663-754 19-108 (284)
391 KOG1308 Hsp70-interacting prot 56.5 4.5 9.7E-05 40.3 0.6 92 665-758 125-216 (377)
392 PF14853 Fis1_TPR_C: Fis1 C-te 55.1 41 0.0009 23.5 5.0 26 694-719 6-31 (53)
393 PF13929 mRNA_stabil: mRNA sta 54.7 2.3E+02 0.005 28.2 17.4 55 252-306 200-255 (292)
394 PRK11619 lytic murein transgly 54.6 3.8E+02 0.0081 30.6 38.1 117 372-491 254-373 (644)
395 KOG4077 Cytochrome c oxidase, 54.2 93 0.002 26.3 7.6 46 518-563 68-113 (149)
396 KOG0403 Neoplastic transformat 54.1 2.9E+02 0.0063 29.2 26.2 45 223-269 54-98 (645)
397 PF13762 MNE1: Mitochondrial s 52.8 1.6E+02 0.0035 25.8 11.6 80 257-336 42-127 (145)
398 KOG2297 Predicted translation 51.5 2.6E+02 0.0057 27.9 17.5 19 570-588 322-340 (412)
399 PF14689 SPOB_a: Sensor_kinase 51.3 48 0.001 24.1 5.1 46 670-717 6-51 (62)
400 KOG3807 Predicted membrane pro 51.0 2.7E+02 0.0059 27.9 11.7 73 653-727 272-349 (556)
401 COG2178 Predicted RNA-binding 50.5 1.7E+02 0.0038 26.9 9.4 17 370-386 40-56 (204)
402 PF04910 Tcf25: Transcriptiona 50.1 3.2E+02 0.0069 28.5 18.3 93 624-718 108-222 (360)
403 KOG4077 Cytochrome c oxidase, 50.1 1.3E+02 0.0028 25.5 7.8 57 674-731 69-125 (149)
404 PF13929 mRNA_stabil: mRNA sta 50.0 2.7E+02 0.0059 27.6 17.4 62 320-381 198-260 (292)
405 PRK11619 lytic murein transgly 49.6 4.5E+02 0.0097 30.0 40.2 248 477-759 254-511 (644)
406 KOG0545 Aryl-hydrocarbon recep 49.2 2.5E+02 0.0055 27.0 12.0 93 627-720 186-295 (329)
407 PF14689 SPOB_a: Sensor_kinase 49.2 34 0.00073 24.9 4.0 29 653-681 22-50 (62)
408 PF06957 COPI_C: Coatomer (COP 48.6 1.3E+02 0.0029 31.7 9.7 50 674-723 283-334 (422)
409 PF00244 14-3-3: 14-3-3 protei 48.5 2.6E+02 0.0057 27.0 13.6 38 472-509 9-46 (236)
410 PF09477 Type_III_YscG: Bacter 48.4 1.5E+02 0.0033 24.3 9.8 76 201-283 23-98 (116)
411 KOG0376 Serine-threonine phosp 48.1 36 0.00079 35.8 5.5 101 579-699 14-115 (476)
412 PF14561 TPR_20: Tetratricopep 48.1 1.4E+02 0.003 23.7 8.4 53 653-705 21-74 (90)
413 PF07163 Pex26: Pex26 protein; 47.7 1.9E+02 0.0041 28.5 9.7 86 627-712 91-181 (309)
414 PF08311 Mad3_BUB1_I: Mad3/BUB 47.7 1.5E+02 0.0032 25.4 8.4 44 672-715 81-125 (126)
415 KOG2908 26S proteasome regulat 47.3 2.4E+02 0.0051 28.6 10.5 82 627-708 83-176 (380)
416 COG4941 Predicted RNA polymera 46.8 3.3E+02 0.0071 27.7 11.5 127 584-722 271-398 (415)
417 PRK10941 hypothetical protein; 46.4 1.1E+02 0.0024 30.2 8.4 62 656-719 183-245 (269)
418 smart00386 HAT HAT (Half-A-TPR 46.0 53 0.0012 19.2 4.2 28 703-731 1-28 (33)
419 PF12862 Apc5: Anaphase-promot 45.8 1.1E+02 0.0023 24.5 6.9 25 694-718 46-70 (94)
420 PF12862 Apc5: Anaphase-promot 43.9 77 0.0017 25.3 5.8 54 700-753 9-70 (94)
421 PF00244 14-3-3: 14-3-3 protei 43.6 3.1E+02 0.0068 26.5 12.1 58 504-561 6-64 (236)
422 PF09670 Cas_Cas02710: CRISPR- 43.0 2.6E+02 0.0057 29.3 11.2 52 510-562 142-197 (379)
423 KOG2659 LisH motif-containing 42.9 1.8E+02 0.0038 27.7 8.6 20 661-680 71-90 (228)
424 KOG2582 COP9 signalosome, subu 42.3 4E+02 0.0087 27.4 17.0 55 509-563 287-345 (422)
425 KOG0991 Replication factor C, 42.2 3.2E+02 0.0069 26.2 13.5 73 494-569 189-273 (333)
426 KOG2063 Vacuolar assembly/sort 42.2 6.4E+02 0.014 29.7 24.7 39 543-581 600-638 (877)
427 PF15297 CKAP2_C: Cytoskeleton 42.1 2.8E+02 0.0061 28.3 10.4 63 671-735 120-186 (353)
428 PF10366 Vps39_1: Vacuolar sor 41.9 1.8E+02 0.0038 24.1 7.7 26 222-247 42-67 (108)
429 COG5187 RPN7 26S proteasome re 41.4 3.7E+02 0.0079 26.7 13.8 68 535-602 116-188 (412)
430 PHA03100 ankyrin repeat protei 41.3 4.3E+02 0.0094 28.7 13.3 14 168-181 50-63 (480)
431 KOG0376 Serine-threonine phosp 41.0 61 0.0013 34.2 5.9 94 627-725 12-107 (476)
432 PF14853 Fis1_TPR_C: Fis1 C-te 40.5 61 0.0013 22.7 4.1 34 575-610 7-40 (53)
433 smart00777 Mad3_BUB1_I Mad3/BU 40.4 1.6E+02 0.0035 25.1 7.4 43 706-748 80-123 (125)
434 KOG0687 26S proteasome regulat 40.4 4.1E+02 0.0088 26.9 15.2 109 494-604 65-179 (393)
435 COG2178 Predicted RNA-binding 40.2 3.1E+02 0.0066 25.4 10.1 16 442-457 134-149 (204)
436 KOG0292 Vesicle coat complex C 40.1 2.6E+02 0.0057 32.3 10.6 70 265-349 654-723 (1202)
437 KOG0687 26S proteasome regulat 39.5 4.2E+02 0.0091 26.8 15.4 136 458-597 64-209 (393)
438 PRK14956 DNA polymerase III su 39.3 3.6E+02 0.0078 29.3 11.4 29 627-655 256-284 (484)
439 PF04910 Tcf25: Transcriptiona 38.9 4.7E+02 0.01 27.2 18.3 99 619-717 40-167 (360)
440 PF10255 Paf67: RNA polymerase 38.6 1.5E+02 0.0033 31.1 8.4 25 725-749 165-189 (404)
441 PF11663 Toxin_YhaV: Toxin wit 38.5 35 0.00075 29.2 3.0 24 666-689 107-130 (140)
442 COG4259 Uncharacterized protei 38.3 74 0.0016 25.5 4.5 45 674-718 57-101 (121)
443 COG4976 Predicted methyltransf 38.1 68 0.0015 30.4 5.1 63 663-727 4-67 (287)
444 PF11848 DUF3368: Domain of un 37.4 1.2E+02 0.0026 20.6 5.1 33 157-189 13-45 (48)
445 PF11846 DUF3366: Domain of un 37.3 1.3E+02 0.0028 27.9 7.3 32 216-247 141-172 (193)
446 cd08819 CARD_MDA5_2 Caspase ac 37.2 2.1E+02 0.0045 22.6 7.0 37 372-413 49-85 (88)
447 PF10366 Vps39_1: Vacuolar sor 37.1 2.4E+02 0.0052 23.3 8.0 26 257-282 42-67 (108)
448 PF09477 Type_III_YscG: Bacter 36.5 2.4E+02 0.0053 23.2 8.8 79 234-319 21-99 (116)
449 PF11848 DUF3368: Domain of un 35.6 1.4E+02 0.003 20.3 5.1 27 232-258 15-41 (48)
450 cd00280 TRFH Telomeric Repeat 35.3 2.5E+02 0.0054 25.8 7.9 64 635-701 85-155 (200)
451 KOG2908 26S proteasome regulat 35.3 3E+02 0.0066 27.9 9.2 56 662-717 83-143 (380)
452 PF11817 Foie-gras_1: Foie gra 34.5 2.2E+02 0.0048 27.7 8.6 59 693-751 182-245 (247)
453 TIGR02710 CRISPR-associated pr 34.0 5.7E+02 0.012 26.8 12.0 54 627-680 138-197 (380)
454 cd00280 TRFH Telomeric Repeat 33.3 2.8E+02 0.0061 25.4 7.9 23 260-282 117-139 (200)
455 PF12968 DUF3856: Domain of Un 33.1 3E+02 0.0065 23.2 13.0 84 666-749 21-125 (144)
456 PF08311 Mad3_BUB1_I: Mad3/BUB 33.0 3.1E+02 0.0067 23.4 9.2 43 342-384 81-124 (126)
457 PF11817 Foie-gras_1: Foie gra 32.3 2.4E+02 0.0051 27.5 8.4 59 657-715 181-244 (247)
458 PF11846 DUF3366: Domain of un 32.0 3.1E+02 0.0067 25.4 8.9 45 674-720 131-175 (193)
459 KOG2422 Uncharacterized conser 32.0 7.3E+02 0.016 27.4 17.6 93 627-719 350-449 (665)
460 COG5187 RPN7 26S proteasome re 31.0 5.4E+02 0.012 25.5 13.6 99 567-681 113-219 (412)
461 PRK10564 maltose regulon perip 30.2 93 0.002 30.9 4.9 30 292-321 260-289 (303)
462 KOG0292 Vesicle coat complex C 30.2 9.2E+02 0.02 28.2 12.7 107 629-735 1001-1130(1202)
463 cd08819 CARD_MDA5_2 Caspase ac 30.1 2.8E+02 0.006 21.9 6.7 38 546-588 48-85 (88)
464 PRK10941 hypothetical protein; 30.0 5.6E+02 0.012 25.4 11.2 58 505-563 187-244 (269)
465 PRK12798 chemotaxis protein; R 29.6 7E+02 0.015 26.4 23.2 157 547-718 125-286 (421)
466 PRK15180 Vi polysaccharide bio 29.6 7.3E+02 0.016 26.6 32.0 125 226-354 296-421 (831)
467 cd02679 MIT_spastin MIT: domai 29.0 1.9E+02 0.0041 22.3 5.4 18 735-752 50-67 (79)
468 PF04190 DUF410: Protein of un 28.0 5.9E+02 0.013 25.0 18.3 26 532-557 88-113 (260)
469 KOG0551 Hsp90 co-chaperone CNS 27.7 2.4E+02 0.0051 28.6 7.1 90 627-718 89-182 (390)
470 PRK09857 putative transposase; 27.3 3.5E+02 0.0075 27.2 8.7 28 729-756 245-272 (292)
471 PF11838 ERAP1_C: ERAP1-like C 27.3 6.6E+02 0.014 25.4 18.6 190 226-419 45-262 (324)
472 PF11768 DUF3312: Protein of u 27.1 6.4E+02 0.014 27.7 10.7 58 624-682 413-472 (545)
473 PRK10564 maltose regulon perip 27.1 1.3E+02 0.0028 30.0 5.3 32 220-251 258-289 (303)
474 PHA02989 ankyrin repeat protei 26.8 6.5E+02 0.014 27.6 11.6 17 238-254 87-103 (494)
475 PF13762 MNE1: Mitochondrial s 26.6 4.5E+02 0.0097 23.2 10.7 24 432-455 42-65 (145)
476 KOG4521 Nuclear pore complex, 26.2 1.3E+03 0.027 28.2 15.0 124 326-452 985-1125(1480)
477 smart00777 Mad3_BUB1_I Mad3/BU 25.7 3.6E+02 0.0079 23.0 7.1 44 671-714 80-124 (125)
478 PHA03100 ankyrin repeat protei 25.6 5.9E+02 0.013 27.6 11.1 46 295-342 144-191 (480)
479 PF10516 SHNi-TPR: SHNi-TPR; 25.3 1.1E+02 0.0024 19.6 3.0 26 726-751 3-28 (38)
480 COG0735 Fur Fe2+/Zn2+ uptake r 25.0 3.9E+02 0.0086 23.4 7.6 61 522-583 9-69 (145)
481 PF15297 CKAP2_C: Cytoskeleton 23.8 3.8E+02 0.0082 27.4 7.9 64 635-700 119-186 (353)
482 PRK09857 putative transposase; 23.5 5.5E+02 0.012 25.8 9.2 14 552-565 258-271 (292)
483 PRK13342 recombination factor 23.5 9.1E+02 0.02 25.7 20.4 21 583-603 244-264 (413)
484 COG5108 RPO41 Mitochondrial DN 23.3 5.5E+02 0.012 28.7 9.4 91 364-457 33-131 (1117)
485 PRK13342 recombination factor 23.0 9.3E+02 0.02 25.6 19.7 24 478-501 244-267 (413)
486 KOG0991 Replication factor C, 22.7 7E+02 0.015 24.1 13.1 37 652-689 237-273 (333)
487 PF09454 Vps23_core: Vps23 cor 22.6 2.3E+02 0.0049 20.9 4.6 49 652-701 6-54 (65)
488 PF11768 DUF3312: Protein of u 22.6 7.7E+02 0.017 27.1 10.3 22 504-525 413-434 (545)
489 COG2812 DnaX DNA polymerase II 22.6 9.9E+02 0.022 26.3 11.4 26 630-655 256-281 (515)
490 PRK08691 DNA polymerase III su 22.6 1.1E+03 0.025 27.0 12.1 23 631-653 257-279 (709)
491 COG4941 Predicted RNA polymera 22.6 8.4E+02 0.018 24.9 10.8 21 627-647 373-393 (415)
492 PF04090 RNA_pol_I_TF: RNA pol 21.9 4.6E+02 0.01 24.5 7.6 64 654-718 41-105 (199)
493 PRK06645 DNA polymerase III su 21.6 9.2E+02 0.02 26.6 11.1 23 631-653 269-291 (507)
494 PF02184 HAT: HAT (Half-A-TPR) 21.3 1.5E+02 0.0033 18.2 2.9 22 670-693 3-24 (32)
495 PF02847 MA3: MA3 domain; Int 21.0 4.7E+02 0.01 21.4 7.2 21 365-385 8-28 (113)
496 PRK14958 DNA polymerase III su 20.9 1.1E+03 0.025 25.9 12.8 23 631-653 257-279 (509)
497 KOG4567 GTPase-activating prot 20.9 5.4E+02 0.012 25.8 8.0 70 274-348 263-342 (370)
498 KOG1114 Tripeptidyl peptidase 20.7 1.5E+03 0.032 27.0 15.9 49 690-738 1232-1281(1304)
499 PF05944 Phage_term_smal: Phag 20.6 5.2E+02 0.011 22.3 7.1 23 664-686 58-80 (132)
500 KOG0686 COP9 signalosome, subu 20.4 1E+03 0.022 25.1 14.8 179 361-542 152-352 (466)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-81 Score=730.81 Aligned_cols=655 Identities=19% Similarity=0.277 Sum_probs=598.8
Q ss_pred cCCChhHHHHHHHhhcCCCCCCCc--hhHHHHHHHHhCCCchHHHHHHHHHHHhCCCCChhhHHHHHHHhcccCCC----
Q 004244 69 TQSDQTLTLKFLKWAQPQPFFTPK--LKCLTLHILTKFKLYKSAQTLAQNLAVDLPRDDGNFVFSCLKETYHLCDS---- 142 (766)
Q Consensus 69 ~~~~~~~al~ff~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~---- 142 (766)
..+++..|+.+|......+ +.|+ ....++....+.+.+..+..+...++..+... ...+.+.+...+..++.
T Consensus 63 ~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~n~li~~~~~~g~~~~A 140 (857)
T PLN03077 63 SHGQLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL-GVRLGNAMLSMFVRFGELVHA 140 (857)
T ss_pred hCCCHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCC-CchHHHHHHHHHHhCCChHHH
Confidence 3567999999999887643 3333 33445666777788888888888777666543 23455666665544432
Q ss_pred --------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCC
Q 004244 143 --------TSSSAVIDLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSR 214 (766)
Q Consensus 143 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g 214 (766)
.++..+|+.+|.+|++.|++++|+.+|++|...|+.||.++|+.++.+|++.+. +..+.+++..|.+.|
T Consensus 141 ~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~---~~~~~~~~~~~~~~g 217 (857)
T PLN03077 141 WYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD---LARGREVHAHVVRFG 217 (857)
T ss_pred HHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc---hhhHHHHHHHHHHcC
Confidence 135568999999999999999999999999999999999999999999988773 388999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 004244 215 VSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNV 294 (766)
Q Consensus 215 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 294 (766)
+.||..+||++|.+|++.|+++.|.++|++|.+ ||+++||++|.+|++.|++++|+++|++|...|+.||..||+.
T Consensus 218 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 999999999999999999999999999999974 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004244 295 IINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGN 374 (766)
Q Consensus 295 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 374 (766)
++.++++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999986 4689999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 375 LNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHG 454 (766)
Q Consensus 375 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 454 (766)
+++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004244 455 MARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDE 534 (766)
Q Consensus 455 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 534 (766)
|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.+|.
T Consensus 450 m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 450 IPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred CCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 865 5888999999999999999999999999986 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhh
Q 004244 535 FTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENC 614 (766)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~ 614 (766)
.++++|+.+|++.|++++|.++|+++ .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll--- 596 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL--- 596 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH---
Confidence 99999999999999999999999887 5799999999999999999999999999999999999999999999
Q ss_pred chhhhhhHHHHHhhhhhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004244 615 TNIEFQNVAALLKGFCMKGLMNEADRVFELML-QRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTII 693 (766)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 693 (766)
.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++| ++.||..+|.
T Consensus 597 ------------~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~ 661 (857)
T PLN03077 597 ------------CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWG 661 (857)
T ss_pred ------------HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 89999999999999999999 7899999999999999999999999999999999 4789999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCCCCCCCC
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLPNSGRSTYG 765 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 765 (766)
+|+.+|...|+.+.|....+++++.. |.+...|..|.+.|...|+|++|.++++.|.++|++|++|+||+.
T Consensus 662 aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 662 ALLNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 99999999999999999999999987 677888999999999999999999999999999999999999973
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-75 Score=680.50 Aligned_cols=617 Identities=20% Similarity=0.274 Sum_probs=573.9
Q ss_pred hhHHHHHHHHhCCCchHHHHHHHHHHHhCCCCChhhHHHHHHHhcc----------------cCCCCCcHHHHHHHHHHH
Q 004244 93 LKCLTLHILTKFKLYKSAQTLAQNLAVDLPRDDGNFVFSCLKETYH----------------LCDSTSSSAVIDLVVKSY 156 (766)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~~~~~~~l~~~~ 156 (766)
....++..+.+.+.+.+|..+...+...+..+... .+..+..... ..+..++..+++.++..|
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDED-AYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 34456788899999999999988887754333221 1222211100 011223556889999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 004244 157 SHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLE 236 (766)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 236 (766)
++.|+++.|..+|+.|. .||.++||.++.+|++.|+ +++|+++|++|...|+.||.+||+.++++|++.+++.
T Consensus 132 ~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~---~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 132 VRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGY---FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999997 4899999999999999994 3999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004244 237 MGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEIS 316 (766)
Q Consensus 237 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 316 (766)
.+.+++..|.+.|+.||+.+||+||.+|++.|++++|.++|++|.. ||.++||++|.+|++.|++++|+++|++|.
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999974 799999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 004244 317 RKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKT 396 (766)
Q Consensus 317 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 396 (766)
+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||.++
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s 356 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 469999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004244 397 YTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSR 476 (766)
Q Consensus 397 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 476 (766)
|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.||++|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 004244 477 SQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRL 556 (766)
Q Consensus 477 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (766)
.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+++.+.++
T Consensus 437 ~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 437 CKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred cCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 9999999999999975 5889999999999999999999999999986 5899999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHH
Q 004244 557 HDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMN 636 (766)
Q Consensus 557 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~ 636 (766)
+..+.+.|+.+|..++++++++|++.|++++|.++|+++ .||..+|++++ .+|++.|+.+
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI---------------~~~~~~G~~~ 571 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL---------------TGYVAHGKGS 571 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH---------------HHHHHcCCHH
Confidence 999999999999999999999999999999999999987 58999999999 9999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 637 EADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMV-RSGFVPHTVTIIVLVKALHTAGMNEELSQVIENI 715 (766)
Q Consensus 637 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (766)
+|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|..++.++++.|+.++|.+++++|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999 7899999999999999999999999999999988
Q ss_pred HHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 716 LRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 716 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
. ..|+..+|..|+.++...|+.+.+....+++.+.
T Consensus 652 ~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 652 P---ITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred C---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 3 4678999999999999999999999988888764
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.2e-72 Score=634.28 Aligned_cols=522 Identities=21% Similarity=0.355 Sum_probs=480.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHH
Q 004244 145 SSAVIDLVVKSYSHLNMIDKAVNIVNLAKVHGFM-PGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYN 223 (766)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 223 (766)
+...+..++..+++.|++++|+++|+.|.+.|+. ++..+++.++.+|.+.|. +++|+.+|+.|.. ||..+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~---~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA---VKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCC---HHHHHHHHHHcCC----CCHHHHH
Confidence 4556777888999999999999999999999864 677788889999998884 4999999999975 9999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 004244 224 VLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEG 303 (766)
Q Consensus 224 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 303 (766)
.++.+|++.|+++.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 004244 304 RLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVR--NGLSPNVVTYTSLINSMCKSGNLNRAMEF 381 (766)
Q Consensus 304 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 381 (766)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004244 382 FDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLA 461 (766)
Q Consensus 382 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 461 (766)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 462 PDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLI 541 (766)
Q Consensus 462 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 541 (766)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhC
Q 004244 542 NAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNK----Q-------------------ARTMEAKKLLLKLFYD 598 (766)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~l~~~~~~~ 598 (766)
.+|++.|++++|.+++++|.+.|+.||..+|++++..+.+ . +..++|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999865432 1 1235677778888887
Q ss_pred CCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 004244 599 ESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYK 678 (766)
Q Consensus 599 ~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 678 (766)
|+.||..+|+.++ .++++.+..+.+..+++.|...+..|+..+|+++++++.+. .++|+.+++
T Consensus 842 Gi~Pd~~T~~~vL---------------~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 842 GTLPTMEVLSQVL---------------GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred CCCCCHHHHHHHH---------------HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHH
Confidence 8888888887777 56677777777777777777666677777888888776332 357888888
Q ss_pred HHHHcCCCCCHH
Q 004244 679 KMVRSGFVPHTV 690 (766)
Q Consensus 679 ~m~~~~~~p~~~ 690 (766)
+|...|+.|+..
T Consensus 905 em~~~Gi~p~~~ 916 (1060)
T PLN03218 905 EAASLGVVPSVS 916 (1060)
T ss_pred HHHHcCCCCCcc
Confidence 888777777763
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.2e-71 Score=625.58 Aligned_cols=524 Identities=20% Similarity=0.294 Sum_probs=339.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 004244 216 SPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNC-LANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNV 294 (766)
Q Consensus 216 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 294 (766)
.++...|..++..+++.|++++|+++|++|.+.|+ +++..+++.++.+|++.|.+++|+.+|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 34555555555556666666666666666655553 34555555555566666666666666655543 55666666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004244 295 IINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGN 374 (766)
Q Consensus 295 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 374 (766)
++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004244 375 LNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTK--NGFMPSIVTYNALIKGHCTGGRVEDAVGVL 452 (766)
Q Consensus 375 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 452 (766)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666666666666666666666666666666666666654 345566666666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004244 453 HGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSP 532 (766)
Q Consensus 453 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 532 (766)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhh
Q 004244 533 DEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIE 612 (766)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~ 612 (766)
|..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL- 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL- 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Confidence 6666666666666666666666666666555556666666666666666666666666666665555666666666655
Q ss_pred hhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-----------------------ccCC
Q 004244 613 NCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHS-----------------------KVGN 669 (766)
Q Consensus 613 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----------------------~~g~ 669 (766)
.+|++.|++++|.+++++|.+.|+.||..+|++++..|. ..+.
T Consensus 762 --------------~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w 827 (1060)
T PLN03218 762 --------------VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW 827 (1060)
T ss_pred --------------HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch
Confidence 555566666666666666666666666666655554322 1223
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004244 670 VQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 670 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (766)
.++|+.+|++|++.|+.||..+|..++.++++.+..+.+...++.+...+..++..+|+.|++++++. .++|..++++
T Consensus 828 ~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 828 TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 47899999999999999999999999988889999999999999888777788899999999988542 3689999999
Q ss_pred HHHCCCCCCCC
Q 004244 750 MAKDGLLPNSG 760 (766)
Q Consensus 750 m~~~~~~~~~~ 760 (766)
|...|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999999975
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-65 Score=578.70 Aligned_cols=482 Identities=19% Similarity=0.289 Sum_probs=380.2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 004244 217 PNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNN-CLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVI 295 (766)
Q Consensus 217 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 295 (766)
.+..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|...|+.||..+||.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344555555555555555555555555555432 4455555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 004244 296 INGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNL 375 (766)
Q Consensus 296 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 375 (766)
+.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~---------------------------------------~~~~t~n~li~~~~~~g~~ 205 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE---------------------------------------RNLASWGTIIGGLVDAGNY 205 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC---------------------------------------CCeeeHHHHHHHHHHCcCH
Confidence 5555555555555444444432 4555666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 376 NRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGM 455 (766)
Q Consensus 376 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 455 (766)
++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|+.|
T Consensus 206 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 285 (697)
T PLN03081 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285 (697)
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66666666666666666666666666666666666666666666666666667777777777777777777777777766
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004244 456 ARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEF 535 (766)
Q Consensus 456 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 535 (766)
.+ +|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..
T Consensus 286 ~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 286 PE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred CC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 43 47888888888899999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhc
Q 004244 536 TYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCT 615 (766)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~ 615 (766)
+|++|+++|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll---- 433 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL---- 433 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH----
Confidence 99999999999999999999999986 4688999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004244 616 NIEFQNVAALLKGFCMKGLMNEADRVFELMLQ-RNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIV 694 (766)
Q Consensus 616 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 694 (766)
.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|..
T Consensus 434 -----------~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~ 499 (697)
T PLN03081 434 -----------SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAA 499 (697)
T ss_pred -----------HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHH
Confidence 899999999999999999985 689999999999999999999999999999887 68899999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCCCCCCC
Q 004244 695 LVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLPNSGRSTY 764 (766)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 764 (766)
++.+|...|+.+.|..+++++.+.+ |.+...|..|++.|++.|+|++|.+++++|.++|+.+.+|++|+
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 9999999999999999999998877 55677899999999999999999999999999999999999996
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-64 Score=571.20 Aligned_cols=476 Identities=20% Similarity=0.326 Sum_probs=449.3
Q ss_pred CCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHH
Q 004244 178 MPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSR-VSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVT 256 (766)
Q Consensus 178 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 256 (766)
.++..+|+.++.++.+.|+ +++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||+.+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~---~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGR---HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred CCCceeHHHHHHHHHcCCC---HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHH
Confidence 4567789999999999884 389999999998754 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 257 YNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCK 336 (766)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 336 (766)
||.++++|++.|++++|.++|++|.+ ||.++||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999999974 79999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 004244 337 EGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRL 416 (766)
Q Consensus 337 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 416 (766)
.|..+.+.+++..+.+.|+.||..+|++|+.+|+++|++++|.++|++|.. +|.++||+++.+|++.|+.++|.++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999964 5999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004244 417 LNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVL 496 (766)
Q Consensus 417 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 496 (766)
|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 004244 497 PDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQ-KGFLPDVVTYSVL 575 (766)
Q Consensus 497 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l 575 (766)
||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 689999999999999999999999999999999999999999999999999999999999999986 5999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CH
Q 004244 576 INGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NE 654 (766)
Q Consensus 576 i~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 654 (766)
+++|++.|++++|.+++++| +..|+..+|++++ .+|+..|+++.|..+++++.+ ..| +.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll---------------~a~~~~g~~~~a~~~~~~l~~--~~p~~~ 528 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALL---------------TACRIHKNLELGRLAAEKLYG--MGPEKL 528 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHH---------------HHHHHcCCcHHHHHHHHHHhC--CCCCCC
Confidence 99999999999999999876 4789999999999 899999999999999999976 446 57
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 004244 655 AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH 688 (766)
Q Consensus 655 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 688 (766)
.+|+.++..|++.|++++|.+++++|.+.|+.+.
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 8999999999999999999999999999997643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.6e-36 Score=358.70 Aligned_cols=643 Identities=14% Similarity=0.100 Sum_probs=522.7
Q ss_pred cCCChhHHHHHHHhhcCCCCCCCchhHHHHHHHHhCCCchHHHHHHHHHHHhCCCCChh------------------hHH
Q 004244 69 TQSDQTLTLKFLKWAQPQPFFTPKLKCLTLHILTKFKLYKSAQTLAQNLAVDLPRDDGN------------------FVF 130 (766)
Q Consensus 69 ~~~~~~~al~ff~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~------------------~~~ 130 (766)
..++.+.|...|..+.+...-.+........+....+.++.|....+..+...+..... ..+
T Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 318 (899)
T TIGR02917 239 EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYL 318 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHH
Confidence 45788889998887765433333333344455566788888888877766655432211 111
Q ss_pred HHHHHhcccCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 004244 131 SCLKETYHLCDSTSSSAVIDLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEM 210 (766)
Q Consensus 131 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m 210 (766)
..... . .+.+...+..+...+.+.|++++|...++.+...+ ..+...++.+...+.+.|+ +++|.++|+++
T Consensus 319 ~~~~~---~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 389 (899)
T TIGR02917 319 NQILK---Y--APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD---FEKAAEYLAKA 389 (899)
T ss_pred HHHHH---h--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 11111 1 12245667788889999999999999999887654 3456778888888888884 38999999998
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH
Q 004244 211 GKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLI 290 (766)
Q Consensus 211 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 290 (766)
.+.. +.+...+..+...+...|++++|.+.|+.+.+.. +.+......++..+.+.|++++|.++++++.... +++..
T Consensus 390 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 466 (899)
T TIGR02917 390 TELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNAS 466 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcH
Confidence 8764 4567778888888999999999999999998765 2344566778888999999999999999997653 45678
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004244 291 SYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMC 370 (766)
Q Consensus 291 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 370 (766)
+|..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++.+.+ +.+..++..+...+.
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYL 544 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 899999999999999999999999987542 345677778888999999999999999998864 347888899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004244 371 KSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVG 450 (766)
Q Consensus 371 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 450 (766)
+.|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+..+|..+...+...|++++|..
T Consensus 545 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998774 3467788889999999999999999999998764 5577889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004244 451 VLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGM 530 (766)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 530 (766)
.++.+.+... .+...+..+...+.+.|++++|...++++.+... .+..++..++..+...|++++|.++++.+.+.+
T Consensus 623 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 699 (899)
T TIGR02917 623 SFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH- 699 (899)
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 9999988643 3677888899999999999999999999987643 367889999999999999999999999998875
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 004244 531 SPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTL 610 (766)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l 610 (766)
+.+...+..+...+.+.|++++|.+.++.+... .|+..++..++.++.+.|++++|.+.+++++.. .+.+...+..+
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~l 776 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTAL 776 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 667778888999999999999999999999886 455577788899999999999999999999875 23345555555
Q ss_pred hhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHH
Q 004244 611 IENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTV 690 (766)
Q Consensus 611 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 690 (766)
. ..|...|++++|...|+++.+.. +++..+++.++..+...|+ ++|+++++++.+.. +-+..
T Consensus 777 a---------------~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~ 838 (899)
T TIGR02917 777 A---------------ELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPA 838 (899)
T ss_pred H---------------HHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcH
Confidence 5 78999999999999999999864 3478899999999999999 88999999998642 23346
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 691 TIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
.+..++..+...|++++|..+++++++.+ +.+..++..++.++.+.|++++|.+++++|++
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 77788999999999999999999999998 45888999999999999999999999999863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-35 Score=352.28 Aligned_cols=650 Identities=14% Similarity=0.097 Sum_probs=508.8
Q ss_pred cCCChhHHHHHHHhhcCCCCCCCchhHHHHHHHHhCCCchHHHHHHHHHHHhCCCCChhhHHHHH---------------
Q 004244 69 TQSDQTLTLKFLKWAQPQPFFTPKLKCLTLHILTKFKLYKSAQTLAQNLAVDLPRDDGNFVFSCL--------------- 133 (766)
Q Consensus 69 ~~~~~~~al~ff~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l--------------- 133 (766)
..++...|+..|..+.....-.+........++...+.++.|...++.+....+.......+...
T Consensus 205 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (899)
T TIGR02917 205 SLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETL 284 (899)
T ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 35567777777766654322223333344566677777888877777766554433211111110
Q ss_pred HHhcccCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhC
Q 004244 134 KETYHLCDSTSSSAVIDLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKS 213 (766)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~ 213 (766)
....... +.....+..+...+...|++++|...|+.+.... ..+...+..+...+.+.|+ +++|.+.++.+...
T Consensus 285 ~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~ 358 (899)
T TIGR02917 285 QDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGR---VDEAIATLSPALGL 358 (899)
T ss_pred HHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc
Confidence 0111111 1122334455667778888888888888877653 2345556667777777774 38888888888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 004244 214 RVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYN 293 (766)
Q Consensus 214 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 293 (766)
. +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.++++...... +.....
T Consensus 359 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 435 (899)
T TIGR02917 359 D-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADL 435 (899)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHH
Confidence 4 5567788888888889999999999999888764 346677788888888889999999999888765422 344556
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 004244 294 VIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSG 373 (766)
Q Consensus 294 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 373 (766)
.++..+.+.|++++|.++++++.+.. +++..++..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 513 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEG 513 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCC
Confidence 67788888999999999999888753 3467788888899999999999999999988753 346677888888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004244 374 NLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLH 453 (766)
Q Consensus 374 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 453 (766)
++++|.+.|+++.+.. +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+...|++++|..+++
T Consensus 514 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998764 3367888889999999999999999999988764 4466778888899999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004244 454 GMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPD 533 (766)
Q Consensus 454 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 533 (766)
.+.+.. +.+...|..+...|.+.|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+
T Consensus 592 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 668 (899)
T TIGR02917 592 EAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDN 668 (899)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence 988764 34778899999999999999999999999987643 367778888999999999999999999998864 556
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhh
Q 004244 534 EFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIEN 613 (766)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~ 613 (766)
..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|.+.++++... .|+..++..+.
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~-- 743 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLH-- 743 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHH--
Confidence 7888899999999999999999999998774 567778888888999999999999999999875 34445555555
Q ss_pred hchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004244 614 CTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTII 693 (766)
Q Consensus 614 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 693 (766)
..+.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|.+.|+++++.. +++..++.
T Consensus 744 -------------~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 744 -------------RALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred -------------HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 78999999999999999999853 3478889999999999999999999999999764 45678889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 756 (766)
.++..+...|+ ++|+.+++++++.. +.+...+..++.++...|++++|.++++++.+.+..
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999 88999999999987 566777888999999999999999999999998764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.1e-27 Score=279.17 Aligned_cols=649 Identities=13% Similarity=0.070 Sum_probs=466.6
Q ss_pred cCCChhHHHHHHHhhcCCCCCCCchhHHHHHHHHhCCCchHHHHHHHHHHHhCCCCChhhHHHHHHHhcccCCCCCcHHH
Q 004244 69 TQSDQTLTLKFLKWAQPQPFFTPKLKCLTLHILTKFKLYKSAQTLAQNLAVDLPRDDGNFVFSCLKETYHLCDSTSSSAV 148 (766)
Q Consensus 69 ~~~~~~~al~ff~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 148 (766)
..++++.|.+.+.-+..-..=+|........++.+.+.++.|...++.+....|.......+...... ..+....
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~-----~~~~~~~ 114 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL-----STPEGRQ 114 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh-----cCCchhh
Confidence 46788888888876654333345666677888899999999999999998877765432222111111 0112333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH-cCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 004244 149 IDLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIR-SGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIR 227 (766)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 227 (766)
...+.+.+.+.|++++|+..|+.+...+ .|+...-......... .+ . .++|++.++++.+.. +-+...+..+..
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g--~-~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPA--Q-RPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCc--c-HHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556778899999999999999988654 2332211112222222 24 3 389999999999874 556778888999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCcC--HH-----------------HHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC
Q 004244 228 GFCGVGDLEMGLRFFSEMEKNNCLAN--VV-----------------TYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPN 288 (766)
Q Consensus 228 ~~~~~g~~~~A~~~~~~m~~~g~~~~--~~-----------------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 288 (766)
.+...|+.++|++.++++.+..-... .. .+...+..+-.....+.|...++++......|+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999976421000 01 111111111122234456666665544322333
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHH-----
Q 004244 289 LISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSP-NVVTY----- 362 (766)
Q Consensus 289 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~----- 362 (766)
... ......+...|++++|...|++..+... .+...+..+...+.+.|++++|+..|++..+..... +...+
T Consensus 270 ~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 270 FRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred hHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 222 2335567789999999999999998542 267788899999999999999999999998764322 11111
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 363 -------TSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNAL 435 (766)
Q Consensus 363 -------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~l 435 (766)
......+.+.|++++|...|++..+... .+...+..+...+...|++++|.+.|+++.+.. +.+...+..+
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L 425 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL 425 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 2234567889999999999999998743 367778889999999999999999999999864 3345566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 436 IKGHCTGGRVEDAVGVLHGMARKGLA--------PDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIH 507 (766)
Q Consensus 436 l~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 507 (766)
...+. .++.++|..+++.+...... .....+..+...+...|++++|++.+++..+..+. +...+..+..
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQ 503 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 76664 46789999888765432110 01234556778889999999999999999987543 6677888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHH
Q 004244 508 GLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVV---------TYSVLING 578 (766)
Q Consensus 508 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---------~~~~li~~ 578 (766)
.|.+.|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+......++.. .+......
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999998764 4455555556666778999999999998765432222221 22345677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 004244 579 LNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVY 657 (766)
Q Consensus 579 ~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 657 (766)
+...|+.++|..+++. .+++...+..+. ..+.+.|++++|+..|+++.+. .| +...+
T Consensus 583 l~~~G~~~eA~~~l~~-----~p~~~~~~~~La---------------~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~ 640 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ-----QPPSTRIDLTLA---------------DWAQQRGDYAAARAAYQRVLTR--EPGNADAR 640 (1157)
T ss_pred HHHCCCHHHHHHHHHh-----CCCCchHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 8899999999999872 223333444444 7899999999999999999985 35 78889
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----hHHHHHHHH
Q 004244 658 DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSCRLS-----DAELAKVLV 731 (766)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~ 731 (766)
..++..|...|++++|++.++++.+. .|+ ...+..++.++...|++++|.+++++++...+.. +..++..++
T Consensus 641 ~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a 718 (1157)
T PRK11447 641 LGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAA 718 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHH
Confidence 99999999999999999999998743 454 4567778889999999999999999999875322 335677789
Q ss_pred HHHhcCCChhHHHHHHHHHH-HCCCCCC
Q 004244 732 EINHKEGNMDAVLNVLTEMA-KDGLLPN 758 (766)
Q Consensus 732 ~~~~~~g~~~~A~~~~~~m~-~~~~~~~ 758 (766)
..+...|++++|++.+++.+ ..|+.|.
T Consensus 719 ~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 719 RFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999998864 4555443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.1e-25 Score=268.36 Aligned_cols=585 Identities=13% Similarity=0.058 Sum_probs=429.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH-----------------HHHHHHHHHcCCCCcHHHHHHHH
Q 004244 145 SSAVIDLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSY-----------------NAILDSVIRSGRNNWVKFAEEVY 207 (766)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-----------------~~ll~~~~~~~~~~~~~~a~~~~ 207 (766)
++.++..+++.+.+.|+.++|.+.++++.+.. |+...+ ..+...+.+.|+ .++|.+.|
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~---~~eA~~~~ 135 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR---TEEALASY 135 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC---HHHHHHHH
Confidence 56778888999999999999999999998765 443322 222335666774 39999999
Q ss_pred HHHhhCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCC
Q 004244 208 NEMGKSRVSPNVY-TYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIE 286 (766)
Q Consensus 208 ~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 286 (766)
+.+.+.+ +|+.. ............|+.++|++.++++.+.. +.+...+..+...+...|+.++|++.++++......
T Consensus 136 ~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~ 213 (1157)
T PRK11447 136 DKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG 213 (1157)
T ss_pred HHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc
Confidence 9998764 34432 11112222234699999999999999874 457778889999999999999999999998653210
Q ss_pred CC--HHH-----------------HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004244 287 PN--LIS-----------------YNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLH 347 (766)
Q Consensus 287 p~--~~~-----------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 347 (766)
.. ... +...+..+-.....+.|...+.++......|+... ......+...|++++|+..|
T Consensus 214 ~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l 292 (1157)
T PRK11447 214 RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPEL 292 (1157)
T ss_pred hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHH
Confidence 00 011 11111111112234456666666554333343322 23356677899999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHH------------HHHHHHHHhcCCHHHHH
Q 004244 348 AEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRP-NEKTY------------TTLINGFSQHGFLDEAY 414 (766)
Q Consensus 348 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~------------~~li~~~~~~g~~~~A~ 414 (766)
++.++.. +.+...+..+...+.+.|++++|+..|++..+..... +...| ......+.+.|++++|.
T Consensus 293 ~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 293 QQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 9999863 3378889999999999999999999999998864322 11112 12245677899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004244 415 RLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKG 494 (766)
Q Consensus 415 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 494 (766)
..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.... +...+..+...|. .++.++|...++.+....
T Consensus 372 ~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~ 448 (1157)
T PRK11447 372 RLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQ 448 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH
Confidence 9999999874 346677888899999999999999999999987433 5666777777774 467899998887654321
Q ss_pred CC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004244 495 VL--------PDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFL 566 (766)
Q Consensus 495 ~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 566 (766)
.. .....+..+...+...|++++|++.+++.++.. +.+...+..+...|.+.|++++|...++++.+. .+
T Consensus 449 ~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~-~P 526 (1157)
T PRK11447 449 RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ-KP 526 (1157)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC
Confidence 00 012245567778889999999999999999874 446677888999999999999999999999875 24
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHH
Q 004244 567 PDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELML 646 (766)
Q Consensus 567 p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (766)
.+...+..+...+...|+.++|+..++++......++......-+ .......+...+...|+.++|+.+++.
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l------~~~~~l~~a~~l~~~G~~~eA~~~l~~-- 598 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL------QSDQVLETANRLRDSGKEAEAEALLRQ-- 598 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH------hhhHHHHHHHHHHHCCCHHHHHHHHHh--
Confidence 455666666666788999999999998875432222221111111 111122344778899999999999872
Q ss_pred hCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHH
Q 004244 647 QRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAEL 726 (766)
Q Consensus 647 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 726 (766)
.+++...+..+...+.+.|++++|++.|+++++.. +.+...+..++..+...|+.++|...++++++.. +.+...
T Consensus 599 ---~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~ 673 (1157)
T PRK11447 599 ---QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNT 673 (1157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHH
Confidence 23466778889999999999999999999999652 3345788899999999999999999999998876 566777
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 004244 727 AKVLVEINHKEGNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 756 (766)
+..++.++...|++++|.++++++......
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 888999999999999999999999876543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=5.6e-21 Score=217.37 Aligned_cols=614 Identities=14% Similarity=0.057 Sum_probs=388.0
Q ss_pred HHHhcCCChhHHHHHHHhhcCCCCCCCchhHHHHHHHHhCCCchHHHHHHHHHHHhCCCCChhhHHHHHHHhcccCCCCC
Q 004244 65 LLLKTQSDQTLTLKFLKWAQPQPFFTPKLKCLTLHILTKFKLYKSAQTLAQNLAVDLPRDDGNFVFSCLKETYHLCDSTS 144 (766)
Q Consensus 65 ~l~~~~~~~~~al~ff~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (766)
.+....+|+..|+..|+-+-....=++.+...+..++...+.++.|...++..+...+.
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~--------------------- 110 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG--------------------- 110 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc---------------------
Confidence 34445688899999998776543223445556677888889999998888877655431
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH-H--------HHHcCCCCcHHHHHHHHHHHhhCCC
Q 004244 145 SSAVIDLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILD-S--------VIRSGRNNWVKFAEEVYNEMGKSRV 215 (766)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~-~--------~~~~~~~~~~~~a~~~~~~m~~~g~ 215 (766)
+......+ +..+++++|..+++++.... |+......++. . |.+. ++|.+.++ ......
T Consensus 111 n~~~~~~L----a~i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~------eqAl~AL~-lr~~~~ 177 (987)
T PRK09782 111 DARLERSL----AAIPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQL------PVARAQLN-DATFAA 177 (987)
T ss_pred cHHHHHHH----HHhccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhH------HHHHHHHH-HhhhCC
Confidence 22222222 22288889999999888763 54333333222 2 3332 45666665 433333
Q ss_pred CCCHHHHHHH-HHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHH-cCChhHHHHHHHHHhhCCCCCCHHHHH
Q 004244 216 SPNVYTYNVL-IRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCK-LGRIDDAFKLLRDMGLKGIEPNLISYN 293 (766)
Q Consensus 216 ~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~~~~ 293 (766)
.|+..+.... ...|.+.|++++|++++.++.+.+ +.+......|...|.. .++ +++..+++.. ++-+...+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHH
Confidence 4455555555 788889999999999999998886 3455556677777777 466 7777775532 235778888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHH------------------------------HHHHHhcCChHH
Q 004244 294 VIINGLCKEGRLKETKGILNEISRKGLV-PDEVTYNTL------------------------------LNGYCKEGNLHQ 342 (766)
Q Consensus 294 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l------------------------------i~~~~~~g~~~~ 342 (766)
.++..|.+.|+.++|.++++++...-.. |+..++.-+ +..+.+.+.++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 8899999999999999988887653222 333332222 233334444443
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 343 ALVLHAEMVRNGLSPNVVTYTSLINSMC--KSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEM 420 (766)
Q Consensus 343 A~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 420 (766)
+.++. ++.|.... ..++... ..+...++.+.+..|.... +-+......+.-...+.|+.++|.++|+..
T Consensus 332 ~~~~~------~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~ 402 (987)
T PRK09782 332 AQKLL------ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQR 402 (987)
T ss_pred HHHHh------cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 33321 12232222 1222221 2255556666666666542 224455555555567788888888888887
Q ss_pred HHC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHH
Q 004244 421 TKN-G-FMPSIVTYNALIKGHCTGGR---VEDAVGV----------------------LHGMARK-GL-AP--DVVSYST 469 (766)
Q Consensus 421 ~~~-g-~~~~~~~~~~ll~~~~~~g~---~~~A~~~----------------------~~~~~~~-~~-~~--~~~~~~~ 469 (766)
... + -..+.....-++..|.+.+. ..++..+ ....... +. ++ +...|..
T Consensus 403 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~ 482 (987)
T PRK09782 403 YPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNR 482 (987)
T ss_pred cCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHH
Confidence 762 1 12334444466666666655 2233222 1111111 11 23 5666777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004244 470 IISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGD 549 (766)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 549 (766)
+..++.. ++.++|+..+.+..... |+......+...+...|++++|...++++... +|+...+..+...+.+.|+
T Consensus 483 LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd 557 (987)
T PRK09782 483 LAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCC
Confidence 7776665 77777888777766553 45444334444556788888888888887554 4444455666777778888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhh
Q 004244 550 IPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGF 629 (766)
Q Consensus 550 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~ 629 (766)
.++|...+++..+.. +++...+..+...+...|++++|...+++.++ ..|+...+..+. ..+
T Consensus 558 ~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA---------------~~l 619 (987)
T PRK09782 558 GAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARA---------------TIY 619 (987)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHH---------------HHH
Confidence 888888888887653 23333333344444456888888888888876 355655565555 677
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHH
Q 004244 630 CMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEE 707 (766)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 707 (766)
.+.|+.++|+..+++..+. .| +...++.+...+...|++++|++.++++++. .|+ ...+..++.++...|++++
T Consensus 620 ~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888874 34 6677778888888888888888888888754 344 4667778888888888888
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 708 LSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 708 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
|...++++++.. |....+....++...+..+++.|.+-+++....++
T Consensus 696 A~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 696 TQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 888888888877 55566666777777777778888777776555443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=6.7e-21 Score=216.73 Aligned_cols=579 Identities=12% Similarity=0.041 Sum_probs=409.7
Q ss_pred HHhCCCchHHHHHHHHHHHhCCCCChhhHHHHHHHhcccCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004244 101 LTKFKLYKSAQTLAQNLAVDLPRDDGNFVFSCLKETYHLCDSTSSSAVIDLVVKSYSHLNMIDKAVNIVNLAKVHGFMPG 180 (766)
Q Consensus 101 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 180 (766)
....+.++.|....+..+...| .+..+...|.+.|.+.|++++|...+++..+. .|+
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP---------------------~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~ 110 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVP---------------------DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPG 110 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence 3334677777666666554433 24677788999999999999999999999876 466
Q ss_pred HhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--------HHhcCChhhHHHHHHHHHhCCCCc
Q 004244 181 VLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRG--------FCGVGDLEMGLRFFSEMEKNNCLA 252 (766)
Q Consensus 181 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~~ 252 (766)
...|..++..+ ++ . ++|.++++++.+.. +-+..++..+... |.+. +.|.+.++ .......|
T Consensus 111 n~~~~~~La~i---~~--~-~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~ 179 (987)
T PRK09782 111 DARLERSLAAI---PV--E-VKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASP 179 (987)
T ss_pred cHHHHHHHHHh---cc--C-hhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCC
Confidence 66666656444 42 2 78999999999874 3445555555555 6655 44444444 33222233
Q ss_pred CHHHH-HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 253 NVVTY-NTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCK-EGRLKETKGILNEISRKGLVPDEVTYNTL 330 (766)
Q Consensus 253 ~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 330 (766)
+..+. ..+...|.+.|++++|++++.++.+.+.. +......+...|.. .++ +++..++.. .++-+...+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHH
Confidence 44444 44489999999999999999999988643 45556777778887 466 888887553 233578889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC-CChHHHH------------------------------HHHHHHHhcCCHHHHH
Q 004244 331 LNGYCKEGNLHQALVLHAEMVRNGLS-PNVVTYT------------------------------SLINSMCKSGNLNRAM 379 (766)
Q Consensus 331 i~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~------------------------------~li~~~~~~g~~~~A~ 379 (766)
...|.+.|+.++|.++++++...-.. |...++. .++..+.+.++++.+.
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999887643211 2222221 2244555556666444
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004244 380 EFFDQMHVRELRPNEKTYTTLING--FSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMAR 457 (766)
Q Consensus 380 ~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 457 (766)
++.. +.|.... ..+.. ....+...++...++.|.+.. +-+.....-+.-...+.|+.++|.++++....
T Consensus 334 ~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 334 KLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred HHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 4311 2333332 12222 223466777777777777752 22444444444456688999999999999877
Q ss_pred C--CCCCCHHHHHHHHHHHHccCC---HHHHHHH-------------------------HHHHHHCCCCC--CHHHHHHH
Q 004244 458 K--GLAPDVVSYSTIISGFSRSQE---LDKAFDT-------------------------KREMVEKGVLP--DTITYSSL 505 (766)
Q Consensus 458 ~--~~~~~~~~~~~li~~~~~~g~---~~~A~~~-------------------------~~~m~~~~~~p--~~~~~~~l 505 (766)
. .-.++......++..|.+.+. ..++..+ +...... .++ +...|..+
T Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~L 483 (987)
T PRK09782 405 FQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRL 483 (987)
T ss_pred CCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHH
Confidence 3 122344556677888877766 3333333 1111111 123 56777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004244 506 IHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQART 585 (766)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 585 (766)
..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|+.
T Consensus 484 G~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~ 558 (987)
T PRK09782 484 AKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNG 558 (987)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCH
Confidence 877776 8999999988888876 456544444455557899999999999998654 55566677778888999999
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 004244 586 MEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHS 665 (766)
Q Consensus 586 ~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 665 (766)
++|...+++.+... |+.......+. ......|++++|+..+++..+. .|+...|..+..++.
T Consensus 559 ~eA~~~l~qAL~l~--P~~~~l~~~La--------------~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~ 620 (987)
T PRK09782 559 AARDRWLQQAEQRG--LGDNALYWWLH--------------AQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYR 620 (987)
T ss_pred HHHHHHHHHHHhcC--CccHHHHHHHH--------------HHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 99999999998753 44322211110 3445669999999999999984 577889999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHH
Q 004244 666 KVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVL 744 (766)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 744 (766)
+.|++++|++.++++++. .|+. ..+..++..+...|+.++|+..++++++.. |.+...+..++.++...|++++|.
T Consensus 621 ~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 621 QRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999964 4554 677788899999999999999999999998 677889999999999999999999
Q ss_pred HHHHHHHHCCC
Q 004244 745 NVLTEMAKDGL 755 (766)
Q Consensus 745 ~~~~~m~~~~~ 755 (766)
..+++..+...
T Consensus 698 ~~l~~Al~l~P 708 (987)
T PRK09782 698 HYARLVIDDID 708 (987)
T ss_pred HHHHHHHhcCC
Confidence 99999887653
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-21 Score=196.20 Aligned_cols=380 Identities=17% Similarity=0.162 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHH
Q 004244 325 VTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYT-TLING 403 (766)
Q Consensus 325 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~ 403 (766)
.+|..+.+.+-..|++++|+.+++.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+..... .+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 344445555555555555555555555432 113444555555555555555555555554443 23322221 22222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 004244 404 FSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKA 483 (766)
Q Consensus 404 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 483 (766)
+-..|++++|...+.+..+.. +--.+.|+.|...+-..|+...|++.|++..+..+. -...|-.|...|-..+.+++|
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHH
Confidence 233455555555555544431 111234555555555555555555555555543211 234555555566666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 484 FDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPD-EFTYTTLINAYCTEGDIPQALRLHDEMIQ 562 (766)
Q Consensus 484 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (766)
...|.+....... ..+.+..+...|..+|..+.|+..|++.++. .|+ ...|+.|.+++-..|++.+|.+.+++.+.
T Consensus 272 vs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 6666655543211 3455556666666777777777777777665 333 45677777777777777777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH-hHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHH
Q 004244 563 KGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDV-IYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRV 641 (766)
Q Consensus 563 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 641 (766)
. .+.-..+.+.|...+...|.+++|..+|...++ +.|.-. ..+.+. ..|-.+|++++|+..
T Consensus 349 l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa---------------~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 349 L-CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLA---------------SIYKQQGNLDDAIMC 410 (966)
T ss_pred h-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHH---------------HHHHhcccHHHHHHH
Confidence 5 233445666777777777777777777777766 344422 233333 677888888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 642 FELMLQRNHMPN-EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 642 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
|++.++ +.|+ ...|+.++..|-..|+.+.|++.+.+++. +.|.- ..++.|+..+..+|+..+|++.++.+++..
T Consensus 411 Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 411 YKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 888877 6674 56788888888888888888888888873 45654 677788888888888888888888888887
Q ss_pred CCChHHHHHHHHHHHh
Q 004244 720 RLSDAELAKVLVEINH 735 (766)
Q Consensus 720 ~~~~~~~~~~l~~~~~ 735 (766)
|+-...|-.++.++-
T Consensus 487 -PDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 487 -PDFPDAYCNLLHCLQ 501 (966)
T ss_pred -CCCchhhhHHHHHHH
Confidence 444555555555443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=9.8e-19 Score=185.56 Aligned_cols=613 Identities=14% Similarity=0.099 Sum_probs=327.5
Q ss_pred CCChhHHHHHHHhhcCCCCCCCchhHHH--HHHHHhCCCchHHHHHHHHHHHhCCCCChhhHHHHHHHhcccCCCCCcHH
Q 004244 70 QSDQTLTLKFLKWAQPQPFFTPKLKCLT--LHILTKFKLYKSAQTLAQNLAVDLPRDDGNFVFSCLKETYHLCDSTSSSA 147 (766)
Q Consensus 70 ~~~~~~al~ff~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 147 (766)
..+.+.|..-|+++.++.. ++++.++ +.|+...+.|..|..+....+...+. |.+ .
T Consensus 143 ~~~~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~----------------~~a----D 200 (1018)
T KOG2002|consen 143 DKSMDDADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPA----------------CKA----D 200 (1018)
T ss_pred CccHHHHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc----------------cCC----C
Confidence 3345788888888887642 2333333 56777778888887777665444332 111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-HcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 004244 148 VIDLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVI-RSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLI 226 (766)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 226 (766)
+.-.+..++.+.|+.+.|+..|.++...+ |+.+.-...|..+. .......+..+...+...-..+ +-|++..+.|.
T Consensus 201 ~rIgig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LA 277 (1018)
T KOG2002|consen 201 VRIGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLA 277 (1018)
T ss_pred ccchhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHH
Confidence 22233466778888888888888887653 43222222222111 1111112355555555554432 34566666677
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCc--CHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHc
Q 004244 227 RGFCGVGDLEMGLRFFSEMEKNNCLA--NVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNL--ISYNVIINGLCKE 302 (766)
Q Consensus 227 ~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~li~~~~~~ 302 (766)
+-|.-.|+++.+..+...+....... -...|--+..+|-..|++++|...|-+..... ||. ..+.-+...+.+.
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHh
Confidence 77777777777777766666542111 12235555666666666666666666555432 332 2334455666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 004244 303 GRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEG----NLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRA 378 (766)
Q Consensus 303 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 378 (766)
|+++.+...|+...+.. +-+..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+-. ++...+
T Consensus 356 ~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~s 432 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWAS 432 (1018)
T ss_pred chHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHH
Confidence 66666666666666532 113344444555554443 3445555555555432 3355555555554433 233333
Q ss_pred HHHHHHHH----HCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC------HHHHHHHHHHHHhcCCH
Q 004244 379 MEFFDQMH----VRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKN---GFMPS------IVTYNALIKGHCTGGRV 445 (766)
Q Consensus 379 ~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~~~------~~~~~~ll~~~~~~g~~ 445 (766)
+.+|.... ..+..+.....|.+...+...|++++|...|.+.... ...+| ..+-..+...+-..++.
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 44443322 2333345555666666666666666666666555443 11111 11222233333344455
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 446 EDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEM 525 (766)
Q Consensus 446 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 525 (766)
+.|.+.|..+.+..+. -+..|-.+...-...+...+|...+++....+ ..++..++.+...+.+...+..|.+-|...
T Consensus 513 ~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 5555555555544111 12222222222223344445555555444432 223344444444444444444444444444
Q ss_pred HHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-
Q 004244 526 LSRG-MSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPS- 603 (766)
Q Consensus 526 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~- 603 (766)
.+.- ..+|..+...|.+.|. +.+....-.| -...+..++|+++|.+.++. .|.
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~------------~~l~~~~rn~-----------ek~kk~~~KAlq~y~kvL~~--dpkN 645 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYI------------QALHNPSRNP-----------EKEKKHQEKALQLYGKVLRN--DPKN 645 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHH------------HHhcccccCh-----------HHHHHHHHHHHHHHHHHHhc--Ccch
Confidence 3321 1123333333333221 1111100000 11345677788888888764 333
Q ss_pred HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 004244 604 DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS 683 (766)
Q Consensus 604 ~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 683 (766)
...-+.+. -.++..|++.+|..+|.++.+... ....+|..++++|...|+|..|+++|+...+.
T Consensus 646 ~yAANGIg---------------iVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 646 MYAANGIG---------------IVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred hhhccchh---------------hhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 567788888888888888887532 24567778888888888888888888887644
Q ss_pred CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHH-------------------HhcCCChhHH
Q 004244 684 GF-VPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEI-------------------NHKEGNMDAV 743 (766)
Q Consensus 684 ~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~g~~~~A 743 (766)
-. ..+......|+.++...|++.+|...+.+++...|.+....++ ++-. ....+..++|
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN-~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a 788 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN-LALVLKKLAESILRLEKRTLEEVLEAVKELEEA 788 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 33 3455777788888888888888888888888876444333332 2221 1224577889
Q ss_pred HHHHHHHHHCCCC
Q 004244 744 LNVLTEMAKDGLL 756 (766)
Q Consensus 744 ~~~~~~m~~~~~~ 756 (766)
.++|.+|.+.+-.
T Consensus 789 ~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 789 RRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999888765
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1e-20 Score=190.11 Aligned_cols=445 Identities=17% Similarity=0.134 Sum_probs=333.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 004244 222 YNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCK 301 (766)
Q Consensus 222 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 301 (766)
...|.+-..+.|++..|++--...-+.+ +.+....-.+-.++.+..+.+....--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445566677788888877666555443 2233333333455556666665544333333221 2245678888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHH
Q 004244 302 EGRLKETKGILNEISRKGLVP-DEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVV-TYTSLINSMCKSGNLNRAM 379 (766)
Q Consensus 302 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~ 379 (766)
.|++++|+.+++.+.+.. | ....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+...+-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 888888888888888743 4 4567888888888888888888888887775 34433 3334555555678888888
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004244 380 EFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPS-IVTYNALIKGHCTGGRVEDAVGVLHGMARK 458 (766)
Q Consensus 380 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 458 (766)
..|.+.++... --.+.|+.|...+-..|+...|+..|++..+. .|+ ...|-.|...|...+.++.|...+.+....
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 88888777622 23677888888888899999999999988875 333 457888888888888999999888888775
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004244 459 GLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYT 538 (766)
Q Consensus 459 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 538 (766)
... ....+..+...|..+|.+|-|++.|++.++..+. =...|+.|..++-..|++.+|...|.+.+... +.-....+
T Consensus 282 rpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 RPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred CCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 332 5677888888899999999999999999886433 35689999999999999999999999998863 44466788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH-hHHHHhhhhchh
Q 004244 539 TLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDV-IYNTLIENCTNI 617 (766)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~-~~~~ll~~~~~~ 617 (766)
.|.++|...|.+++|..+|....+. .+.-....+.|...|-++|++++|+..+++.++ +.|+.. .|+.+.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG------ 429 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG------ 429 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc------
Confidence 9999999999999999999999875 233346788899999999999999999999987 677643 445555
Q ss_pred hhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 004244 618 EFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPN-EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVL 695 (766)
Q Consensus 618 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 695 (766)
..|-..|+.+.|+..+.+.+. +.|. ....+.|...|-..|+..+|++-+++.+ .++||. ..+-.+
T Consensus 430 ---------nt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNl 496 (966)
T KOG4626|consen 430 ---------NTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNL 496 (966)
T ss_pred ---------hHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHH
Confidence 788999999999999999998 4563 5678899999999999999999999998 457775 444445
Q ss_pred HHHHH
Q 004244 696 VKALH 700 (766)
Q Consensus 696 ~~~~~ 700 (766)
+.++.
T Consensus 497 lh~lq 501 (966)
T KOG4626|consen 497 LHCLQ 501 (966)
T ss_pred HHHHH
Confidence 44443
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=9.6e-19 Score=185.65 Aligned_cols=573 Identities=15% Similarity=0.087 Sum_probs=415.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCChhhHH
Q 004244 162 IDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKS--RVSPNVYTYNVLIRGFCGVGDLEMGL 239 (766)
Q Consensus 162 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~ 239 (766)
++.|...|....+. .|+... ..+..|+...++.+ +..|+.+|...... ..+||+.. .+..++.+.|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~--sp~Nil-~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDNIL-ALLGKARIAYNKKD-YRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcchH-HHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHH
Confidence 68999999988865 344333 34556666655545 48999999996553 34566543 3446677999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHHc---CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004244 240 RFFSEMEKNNCLANVVTYNTLIDGYCKL---GRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEIS 316 (766)
Q Consensus 240 ~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 316 (766)
..|.+..+.+ +.++.++-.|.-.-... ..+..+..++...-... .-|++..+.|.+-|.-.|+++.++.+.+.+.
T Consensus 220 ~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 220 LAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9999999975 22344443333222222 34556777777665443 2467888999999999999999999999998
Q ss_pred HCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004244 317 RKGLV--PDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNE 394 (766)
Q Consensus 317 ~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 394 (766)
..... .-...|-.+..+|-..|++++|...|.+..+..-.--+..+..|..+|.+.|+++.+...|+.+.+.. +.+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH
Confidence 75321 11234677889999999999999999888775322124455678899999999999999999999873 3367
Q ss_pred hHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHH
Q 004244 395 KTYTTLINGFSQHG----FLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMA----RKGLAPDVVS 466 (766)
Q Consensus 395 ~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~ 466 (766)
.+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+-. ++...++..+..+. ..+-.+.+..
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 77777777777765 5678888888877764 4567777777766655 44444466665544 4455578899
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHH
Q 004244 467 YSTIISGFSRSQELDKAFDTKREMVEK---GVLPDT------ITYSSLIHGLCEQRRITEACELFQEMLSRGMSPD-EFT 536 (766)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~ 536 (766)
.|.+...+...|++.+|...|+..... ...+|. .+--.+...+-..++.+.|.+.|..+.+. .|. +..
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHH
Confidence 999999999999999999999988765 112222 23334556667778999999999999987 444 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHHhHHHHhhhhc
Q 004244 537 YTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDES-VPSDVIYNTLIENCT 615 (766)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~p~~~~~~~ll~~~~ 615 (766)
|-.+.-.....+...+|...++..... ...++..+.-+...+.+...+..|.+-|........ .+|..+..+|..-|.
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 555543444557889999999998875 355667777777788888899999887777766522 256555555542111
Q ss_pred hhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 004244 616 NIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIV 694 (766)
Q Consensus 616 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 694 (766)
....... -..-...+..++|+.+|.++++. .| |..+-|.++-+++..|++.+|..+|.+..+.. .-...+|..
T Consensus 612 ~~l~~~~---rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lN 685 (1018)
T KOG2002|consen 612 QALHNPS---RNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLN 685 (1018)
T ss_pred HHhcccc---cChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeee
Confidence 0000000 01122345678899999999985 35 88888999999999999999999999998764 334567999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 695 LVKALHTAGMNEELSQVIENILRSC-RLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
++.+|...|++..|++.|+.+++.- ...+..+...|+.++.+.|.+.+|.+.+.......
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999874 34568888999999999999999999887765543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.3e-18 Score=195.36 Aligned_cols=431 Identities=13% Similarity=0.008 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 255 VTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGY 334 (766)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 334 (766)
..+......+.+.|++++|...|++.... .|+...|..+..+|.+.|++++|++.+++..+... .+...+..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 45566777888889999999999888764 56777888888888888899999888888887532 2455777788888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 004244 335 CKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAY 414 (766)
Q Consensus 335 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 414 (766)
...|++++|..-|......+...+.. ...++..+.. ..+........+.. +++...+..+. .+..........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVG-NYLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHH-HHHHHccCCcch
Confidence 88888888888777665542221221 1122221111 22223333333321 12222222222 222221111121
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 004244 415 RLLNEMTKNGFMPSI-VTYNALIKG---HCTGGRVEDAVGVLHGMARKG-L-APDVVSYSTIISGFSRSQELDKAFDTKR 488 (766)
Q Consensus 415 ~l~~~m~~~g~~~~~-~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 488 (766)
.-+.+..+. .++. ..+..+... ....+++++|...|+...+.+ . +.....++.+...+...|++++|+..++
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 112211111 1111 111111111 123467888888888887754 1 2244567777777888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004244 489 EMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPD 568 (766)
Q Consensus 489 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 568 (766)
+..+.... +...|..+...+...|++++|...++++++.. +.+..+|..+...+...|++++|...|++.++.. +.+
T Consensus 356 kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 356 KSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 88775322 35577777777888888888888888887764 4556777788888888888888888888887752 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh
Q 004244 569 VVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ 647 (766)
Q Consensus 569 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (766)
...+..+...+.+.|++++|+..|++.+.. .|+ ...++.+. ..+...|++++|++.|++..+
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg---------------~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYG---------------ELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHH---------------HHHHHccCHHHHHHHHHHHHh
Confidence 666777777788888888888888887763 333 44444444 677788888888888888776
Q ss_pred CCCCCCHH------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 648 RNHMPNEA------VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 648 ~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
.....+.. .++..+..+...|++++|.+++++++.. .|+. ..+..++..+...|++++|+.+++++.+..
T Consensus 496 l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 496 LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 42211111 1112222233468888888888887754 3444 567778888888888888888888887765
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=5e-20 Score=196.39 Aligned_cols=303 Identities=16% Similarity=0.157 Sum_probs=223.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC
Q 004244 438 GHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPD---TITYSSLIHGLCEQRR 514 (766)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~ 514 (766)
.+...|++++|...|.++.+.+. .+..++..+...+...|++++|...++.+...+..++ ...+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34456777777777777776533 2455677777777777777777777777766532221 2456777778888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 004244 515 ITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPD----VVTYSVLINGLNKQARTMEAKK 590 (766)
Q Consensus 515 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~ 590 (766)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888887653 45667788888888888888888888888876542221 1234566777788899999999
Q ss_pred HHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 004244 591 LLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGN 669 (766)
Q Consensus 591 l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 669 (766)
.++++.+. .|+ ...+..+. ..+.+.|++++|.+.++++.+.+......+++.++.+|.+.|+
T Consensus 202 ~~~~al~~--~p~~~~~~~~la---------------~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 202 LLKKALAA--DPQCVRASILLG---------------DLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhH--CcCCHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 99988764 343 33444444 7888899999999999998875322224567888999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhc---CCChhHHHHH
Q 004244 670 VQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHK---EGNMDAVLNV 746 (766)
Q Consensus 670 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 746 (766)
+++|.+.++++.+. .|+...+..++..+.+.|++++|...++++++.. |. ...+..++..+.. .|+.++|..+
T Consensus 265 ~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-P~-~~~~~~l~~~~~~~~~~g~~~~a~~~ 340 (389)
T PRK11788 265 EAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH-PS-LRGFHRLLDYHLAEAEEGRAKESLLL 340 (389)
T ss_pred HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-cC-HHHHHHHHHHhhhccCCccchhHHHH
Confidence 99999999998864 5777667888999999999999999999999885 33 3455556666553 5689999999
Q ss_pred HHHHHHCCCCCCCCCCC
Q 004244 747 LTEMAKDGLLPNSGRST 763 (766)
Q Consensus 747 ~~~m~~~~~~~~~~~~~ 763 (766)
+++|.++++.|+|.+.+
T Consensus 341 ~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 341 LRDLVGEQLKRKPRYRC 357 (389)
T ss_pred HHHHHHHHHhCCCCEEC
Confidence 99999999998888654
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=6e-18 Score=189.90 Aligned_cols=436 Identities=15% Similarity=0.033 Sum_probs=297.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 004244 221 TYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLC 300 (766)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 300 (766)
.+......+.+.|++++|++.|++.++. .|+...|..+..+|.+.|++++|.+.+++..+... .+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3455677778888888888888888765 46777888888888888888888888888876532 24567777888888
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 004244 301 KEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAME 380 (766)
Q Consensus 301 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 380 (766)
..|++++|+.-|......+...+.. ...++..+.. ..+........+.. +++...+..+.. |......+.+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 8888888888777665532211221 1111211111 12222233333321 222222222222 222212222221
Q ss_pred HHHHHHHCCCCCC-HhHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 381 FFDQMHVRELRPN-EKTYTTLING---FSQHGFLDEAYRLLNEMTKNG-F-MPSIVTYNALIKGHCTGGRVEDAVGVLHG 454 (766)
Q Consensus 381 ~~~~m~~~~~~~~-~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g-~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 454 (766)
-+.+..+. .++ ...+..+... ....+++++|.+.|++..+.+ . +.....+..+...+...|++++|+..++.
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12211111 111 1111111111 123467899999999998765 2 23455677888888899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004244 455 MARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDE 534 (766)
Q Consensus 455 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 534 (766)
..+.... ....|..+...+...|++++|...|++..+... .+...|..+...+...|++++|...|++.++.. +.+.
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 9886432 466888888999999999999999999988753 367888899999999999999999999999875 5567
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhh
Q 004244 535 FTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENC 614 (766)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~ 614 (766)
..+..+...+.+.|++++|+..+++.++. .+.+...|..+...+...|++++|++.|++.+......+....+...
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~--- 509 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP--- 509 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH---
Confidence 77888889999999999999999999875 35567888999999999999999999999988742211111111110
Q ss_pred chhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 004244 615 TNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS 683 (766)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 683 (766)
.+......+...|++++|.+++++..+. .| +...+..++..+.+.|++++|+++|+++.+.
T Consensus 510 ------l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 ------LINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred ------HHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 0000112344579999999999999875 35 5667899999999999999999999998754
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.4e-19 Score=192.85 Aligned_cols=299 Identities=13% Similarity=0.144 Sum_probs=164.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCH
Q 004244 369 MCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPS---IVTYNALIKGHCTGGRV 445 (766)
Q Consensus 369 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~ 445 (766)
+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3445555555555555555421 2334455555555555555555555555554321111 13345555555555666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 004244 446 EDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDT----ITYSSLIHGLCEQRRITEACEL 521 (766)
Q Consensus 446 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~ 521 (766)
++|..+|+.+.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666665555432 224455555666666666666666666665554322211 1234455556666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004244 522 FQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESV 601 (766)
Q Consensus 522 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 601 (766)
++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++... .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 66666543 33344555666666666666666666666665421111344556666666666666666666666653 3
Q ss_pred CcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCChHHHHHHHH
Q 004244 602 PSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSK---VGNVQKAYDLYK 678 (766)
Q Consensus 602 p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~ 678 (766)
|+...+..+. ..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++
T Consensus 280 p~~~~~~~la---------------~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 280 PGADLLLALA---------------QLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred CCchHHHHHH---------------HHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 4444443333 5666666777777766666653 3666666655555543 346666777676
Q ss_pred HHHHcCCCCCH
Q 004244 679 KMVRSGFVPHT 689 (766)
Q Consensus 679 ~m~~~~~~p~~ 689 (766)
+|++.++.|++
T Consensus 343 ~~~~~~~~~~p 353 (389)
T PRK11788 343 DLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHhCCC
Confidence 66665555554
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.6e-17 Score=185.55 Aligned_cols=361 Identities=11% Similarity=0.052 Sum_probs=282.2
Q ss_pred HHhcCChHHHHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 004244 334 YCKEGNLHQALVLHAEMVRNG--LSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLD 411 (766)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 411 (766)
+.+..+++.-.-+|..-.+.- -..+..-...++..+.+.|+.++|..+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 456677776666555443321 0112333445667778899999999999999888544 4555666667778899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004244 412 EAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMV 491 (766)
Q Consensus 412 ~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 491 (766)
+|...++++.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999999874 44567788888999999999999999999998643 367788889999999999999999999887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 004244 492 EKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVT 571 (766)
Q Consensus 492 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 571 (766)
..... +...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|...++++.+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 76543 33334333 3478899999999999998876433445555666788899999999999999999763 556778
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHH
Q 004244 572 YSVLINGLNKQARTME----AKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELML 646 (766)
Q Consensus 572 ~~~li~~~~~~g~~~~----A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (766)
+..+...+...|++++ |...+++.+.. .|+ ...+..+. ..+...|++++|+..++++.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg---------------~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYA---------------DALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHH
Confidence 8889999999999986 89999999874 455 44455554 88999999999999999999
Q ss_pred hCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 004244 647 QRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVT-IIVLVKALHTAGMNEELSQVIENILRSCRL 721 (766)
Q Consensus 647 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 721 (766)
+. .| +...+..+..++.+.|++++|++.++++.+. .|+... +..++.++...|+.++|+..++++++..+.
T Consensus 312 ~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 312 AT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred Hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 85 35 5777888999999999999999999999854 455533 444577889999999999999999998744
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=2.6e-17 Score=183.92 Aligned_cols=387 Identities=11% Similarity=0.062 Sum_probs=298.5
Q ss_pred HcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 004244 301 KEGRLKETKGILNEISRKG--LVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRA 378 (766)
Q Consensus 301 ~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 378 (766)
+..+++.-.-+|....++- -.-+......++..+.+.|++++|..+++..+..... +......++......|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHH
Confidence 4555555444444433210 0012223445677788999999999999999887433 455666677777889999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004244 379 MEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARK 458 (766)
Q Consensus 379 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 458 (766)
...|+++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+...
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999998743 367788889999999999999999999999863 445678888999999999999999999988776
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004244 459 GLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYT 538 (766)
Q Consensus 459 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 538 (766)
... +...+..+ ..+.+.|++++|...++.+......++...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 444 33344333 3478899999999999998877544455566666788999999999999999999875 55677888
Q ss_pred HHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhh
Q 004244 539 TLINAYCTEGDIPQ----ALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENC 614 (766)
Q Consensus 539 ~l~~~~~~~g~~~~----A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~ 614 (766)
.+...+...|++++ |...+++..+. .+.+...+..+...+.+.|++++|...+++.+.. .|+.......++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La-- 325 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYA-- 325 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH--
Confidence 89999999999986 89999999976 3556778999999999999999999999999884 455443333332
Q ss_pred chhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004244 615 TNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNE-AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTII 693 (766)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 693 (766)
..+...|++++|+..++++.+. .|+. ..+..++.++...|++++|++.|+++++. .|+..
T Consensus 326 ------------~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~--- 386 (656)
T PRK15174 326 ------------RALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA--RASHL--- 386 (656)
T ss_pred ------------HHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc---
Confidence 7899999999999999999975 3543 44455677899999999999999999854 45542
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCChHH
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSCRLSDAE 725 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 725 (766)
...+++|...+.+.++.-..+...
T Consensus 387 --------~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 387 --------PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred --------hhhHHHHHHHHHHHHHhcCCccch
Confidence 345578888888888774344333
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=7.6e-17 Score=184.23 Aligned_cols=418 Identities=11% Similarity=0.033 Sum_probs=257.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004244 288 NLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLIN 367 (766)
Q Consensus 288 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 367 (766)
+..-....+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44445555666677888888888888887622 2345567888888888888888888888887752 335666778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004244 368 SMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVED 447 (766)
Q Consensus 368 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 447 (766)
.+...|++++|...+++..+.. +.+.. +..+...+...|+.++|...++++.+.. +.+...+..+...+...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 8888888888888888888773 23455 7778888888888888888888888864 3345555667777778888888
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----ccCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHH
Q 004244 448 AVGVLHGMARKGLAPDV------VSYSTIISGFS-----RSQEL---DKAFDTKREMVEK-GVLPDTI-TY----SSLIH 507 (766)
Q Consensus 448 A~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-~~----~~li~ 507 (766)
|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 8888776553 2221 11122222221 12223 6677777777653 1222221 11 11123
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcC
Q 004244 508 GLCEQRRITEACELFQEMLSRGMS-PDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLP---DVVTYSVLINGLNKQA 583 (766)
Q Consensus 508 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~li~~~~~~g 583 (766)
.+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..++++.+..-.. .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 445667777787777777766421 222 12224567777777888877777776542110 1234555666677777
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhh-hhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004244 584 RTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIE-FQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIH 662 (766)
Q Consensus 584 ~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 662 (766)
++++|.+.++++... .|.............+.. ......+...+...|++++|++.++++.... +.+...+..++.
T Consensus 325 ~~~eA~~~l~~~~~~--~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 325 NYPGALTVTAHTINN--SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cHHHHHHHHHHHhhc--CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 777777777777653 232211111110101100 1122334455666677777777777766542 225666666777
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 663 GHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 663 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
.+...|++++|++.++++++. .|+. ..+...+..+...|++++|...++++++..
T Consensus 402 l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 777777777777777776643 4553 444455556666777777777777777765
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=3.2e-13 Score=137.72 Aligned_cols=555 Identities=13% Similarity=0.081 Sum_probs=426.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 004244 158 HLNMIDKAVNIVNLAKVHGFMPG-VLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLE 236 (766)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 236 (766)
|....+.|..+.....++ .|+ +..|---.+.=. + ...=.++++...+. +|.++..|...+ ...+.+
T Consensus 327 RLhp~d~aK~vvA~Avr~--~P~Sv~lW~kA~dLE~-----~-~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~ 393 (913)
T KOG0495|consen 327 RLHPPDVAKTVVANAVRF--LPTSVRLWLKAADLES-----D-TKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPE 393 (913)
T ss_pred hcCChHHHHHHHHHHHHh--CCCChhhhhhHHhhhh-----H-HHHHHHHHHHHHHh-CCchHHHHHHHH----hccChH
Confidence 455666677776666654 243 333322221110 0 12233555555554 456666665544 456777
Q ss_pred hHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-
Q 004244 237 MGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEI- 315 (766)
Q Consensus 237 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m- 315 (766)
.|+-++.+..+. |+.+...|. +|.+..-++.|.+++++..+. ++.+...|.+-...--.+|..+...+++.+-
T Consensus 394 darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 394 DARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred HHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 799999999885 344555554 455667889999999998764 6668888888777777889988888887654
Q ss_pred ---HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004244 316 ---SRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSP--NVVTYTSLINSMCKSGNLNRAMEFFDQMHVREL 390 (766)
Q Consensus 316 ---~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 390 (766)
...|+..+...|..=...|-..|..-.+..+....+..|+.. -..+|+.-...+.+.+.++-|..+|...++. .
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-f 546 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-F 546 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-c
Confidence 456888888888888888889999999999999988877664 3568888899999999999999999998876 3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 391 RPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTI 470 (766)
Q Consensus 391 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 470 (766)
+.+...|...+..--..|..++-..+|++....- +-....|....+.+-..|++..|..++..+.+.... +...|-+-
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaa 624 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAA 624 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4467778888877778899999999999999873 445566777777788889999999999999988655 78889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004244 471 ISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDI 550 (766)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 550 (766)
+.......+++.|..+|.+.... .|+...|.--+...--.++.++|.+++++.++. ++.-...|..+...+-+.+++
T Consensus 625 vKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHH
Confidence 99999999999999999988764 467777777777777789999999999999886 233356788888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhh
Q 004244 551 PQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFC 630 (766)
Q Consensus 551 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~ 630 (766)
+.|.+.|..-.+. ++-....|..+.+.--+.|..-.|..++++..-. .+.+...|...+ ..-.
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk-NPk~~~lwle~I---------------r~El 764 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK-NPKNALLWLESI---------------RMEL 764 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHH---------------HHHH
Confidence 9999999887765 4556667877777778899999999999998765 344666777777 8888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004244 631 MKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQ 710 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 710 (766)
+.|+.+.|..+..++++. ++.+...|..-|...-+.++-..+...+++. .-|+.....+...+....++++|..
T Consensus 765 R~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~ 838 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKARE 838 (913)
T ss_pred HcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988875 3335666777777776777766666655553 5667778888889999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCCCCCC
Q 004244 711 VIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLPNSGRST 763 (766)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 763 (766)
+|+++++.+ ++...+|..+...+.+.|.-++-.+++++.... .|.-|-.|
T Consensus 839 Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W 888 (913)
T KOG0495|consen 839 WFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELW 888 (913)
T ss_pred HHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHH
Confidence 999999998 677888888999999999888888888876553 44445444
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=4.9e-16 Score=177.60 Aligned_cols=302 Identities=10% Similarity=0.117 Sum_probs=146.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 253 NVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLN 332 (766)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 332 (766)
+.....-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.+++++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33333444445555666666666666655311 2233345556666666666666666666655532 123444445555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 004244 333 GYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDE 412 (766)
Q Consensus 333 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 412 (766)
.+...|++++|...++++.+.. +.+.. +..+...+...|+.++|...++++.+..+. +...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 5666666666666666665542 22344 555566666666666666666666655322 34444445555555666666
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHh-----cCCH---HHHHHHHHHHHHC-CCCCCHH-HH-H---HHHH
Q 004244 413 AYRLLNEMTKNGFMPSI------VTYNALIKGHCT-----GGRV---EDAVGVLHGMARK-GLAPDVV-SY-S---TIIS 472 (766)
Q Consensus 413 A~~l~~~m~~~g~~~~~------~~~~~ll~~~~~-----~g~~---~~A~~~~~~~~~~-~~~~~~~-~~-~---~li~ 472 (766)
|++.++.... .|+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+ . ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 6665554443 1211 011111222111 1122 4555555555543 1112111 11 0 0022
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcC
Q 004244 473 GFSRSQELDKAFDTKREMVEKGVL-PDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSP---DEFTYTTLINAYCTEG 548 (766)
Q Consensus 473 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g 548 (766)
.+...|++++|+..|+++.+.+.. |+. ....+...|...|++++|+..|+++....... .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 234446666666666666555321 221 11123445666666666666666655432110 1223344444556666
Q ss_pred ChHHHHHHHHHHHHC
Q 004244 549 DIPQALRLHDEMIQK 563 (766)
Q Consensus 549 ~~~~A~~~~~~~~~~ 563 (766)
++++|..+++.+...
T Consensus 325 ~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 325 NYPGALTVTAHTINN 339 (765)
T ss_pred cHHHHHHHHHHHhhc
Confidence 666666666666543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=2.1e-15 Score=168.67 Aligned_cols=445 Identities=12% Similarity=0.103 Sum_probs=280.7
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 004244 228 GFCGVGDLEMGLRFFSEMEKNNCLANV--VTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRL 305 (766)
Q Consensus 228 ~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 305 (766)
...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 3556777777777777776653 332 233 66666667777777777777766210 11122222224456666777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 306 KETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQM 385 (766)
Q Consensus 306 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 385 (766)
++|+++|+++.+.... +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 7777777777765422 3445555566667777777777777776654 344444444444444445555577777777
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004244 386 HVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVV 465 (766)
Q Consensus 386 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 465 (766)
.+.. +.+...+..+...+.+.|-...|.++..+- |+..+-...... +.+.|.+..+. +..++..
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~----a~~~~~~ 259 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRM----AVLPTRS 259 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhh----ccccccc
Confidence 7663 224555666666667777666666555442 221111111000 01111111111 1000000
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004244 466 SYSTIISGFSRSQELDKAFDTKREMVEK-GVLPDT-IT----YSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTT 539 (766)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 539 (766)
- . .+---.+.|+.-++.+... +..|.. .. ..-.+-++...|++.++++.|+.+...+.+....+-..
T Consensus 260 ~-~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 E-T------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred c-h------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 0 0 0111245566666665542 222321 11 12234477888999999999999998876545557788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CC
Q 004244 540 LINAYCTEGDIPQALRLHDEMIQKG-----FLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDE-------------SV 601 (766)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-------------~~ 601 (766)
+.++|...++.++|..++.++.... .+++......|.-++...+++++|..+++++.+.. ..
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 9999999999999999999987542 23345556778889999999999999999998731 11
Q ss_pred CcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHH
Q 004244 602 PSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKM 680 (766)
Q Consensus 602 p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 680 (766)
||-..+..+ ++..+...|++.+|++.++++.... | |......+.+.+...|++.+|.+.++.+
T Consensus 413 ~d~~~~~~l--------------~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 413 DDWIEGQTL--------------LVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred ccHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222222222 2367888999999999999998753 5 8999999999999999999999999887
Q ss_pred HHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 004244 681 VRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 681 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (766)
.. ..|+. .+....+.++...|++++|....+++++..|
T Consensus 477 ~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 477 ES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred hh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 73 46665 5666888899999999999999999999973
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=2.3e-14 Score=160.45 Aligned_cols=440 Identities=13% Similarity=0.087 Sum_probs=325.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 004244 150 DLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGV--LSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIR 227 (766)
Q Consensus 150 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 227 (766)
-.-+-...+.|+++.|+..|+...+.. |+. ..+ .++..+...|+. ++|+..+++.... .+........+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~---~~A~~~~eka~~p-~n~~~~~llalA~ 110 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRD---QEVIDVYERYQSS-MNISSRGLASAAR 110 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCc---HHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence 334445679999999999999998764 543 233 777777777853 8999999998821 1233444444466
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhH
Q 004244 228 GFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKE 307 (766)
Q Consensus 228 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 307 (766)
.+...|++++|+++|+++.+.. +.|...+..++..+...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 8888999999999999999875 445777778889999999999999999999876 4666666555444545677767
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH------HHHHHHHH---H--hcCC--
Q 004244 308 TKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVT------YTSLINSM---C--KSGN-- 374 (766)
Q Consensus 308 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~------~~~li~~~---~--~~g~-- 374 (766)
|++.++++.+... -+...+..+...+.+.|-...|.++..+-... +.+.... ...+++.- . ...+
T Consensus 188 AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 188 ALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 9999999999642 25667788889999999999998877653321 1111100 11111111 0 1122
Q ss_pred -HHHHHHHHHHHHHC-CCCCC-HhH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004244 375 -LNRAMEFFDQMHVR-ELRPN-EKT----YTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVED 447 (766)
Q Consensus 375 -~~~A~~~~~~m~~~-~~~~~-~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 447 (766)
.+.|+.-++.+... +..|. ... ..-.+-++...|++.++++.|+.+...|.+....+-..+.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 34566666666553 12232 122 223456778899999999999999999877666788899999999999999
Q ss_pred HHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHH
Q 004244 448 AVGVLHGMARKG-----LAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGV-------------LPDTI-TYSSLIHG 508 (766)
Q Consensus 448 A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~li~~ 508 (766)
|..++..+.... ..++......|..+|...+++++|..+++.+.+... .||-. .+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999997753 123444567899999999999999999999987421 12222 24456777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004244 509 LCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEA 588 (766)
Q Consensus 509 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 588 (766)
+...|+..+|++.++++.... |-|......+.+.+...|.+.+|++.++..... .+-+..+....+..+...|++++|
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHH
Confidence 889999999999999998875 778999999999999999999999999777654 344566777788888899999999
Q ss_pred HHHHHHHHhCCCCCcHH
Q 004244 589 KKLLLKLFYDESVPSDV 605 (766)
Q Consensus 589 ~~l~~~~~~~~~~p~~~ 605 (766)
..+.+.+... .|+..
T Consensus 504 ~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 504 ELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHHHHHhh--CCCch
Confidence 9999998874 45544
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=1.8e-13 Score=145.21 Aligned_cols=607 Identities=15% Similarity=0.130 Sum_probs=321.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhCCCCChhhHHHHHHHhcccCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004244 98 LHILTKFKLYKSAQTLAQNLAVDLPRDDGNFVFSCLKETYHLCDSTSSSAVIDLVVKSYSHLNMIDKAVNIVNLAKVHGF 177 (766)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 177 (766)
+..|...|.+.+|..++.++++..+. ++..|..|...|-..|+.++|...+-.+....
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~---------------------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~- 203 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR---------------------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN- 203 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc---------------------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-
Confidence 56677778999999998888876543 44566677777777777777776665544332
Q ss_pred CCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHH
Q 004244 178 MPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTY 257 (766)
Q Consensus 178 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 257 (766)
+-|...|-.+-.-..+.| . +++|.-.|.+..+.. +++...+---+..|-+.|+...|.+-|.++.+...+.|..-.
T Consensus 204 p~d~e~W~~ladls~~~~--~-i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~ 279 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLG--N-INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI 279 (895)
T ss_pred CCChHHHHHHHHHHHhcc--c-HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH
Confidence 223345555555555555 2 377777777777664 334333333455566677777777777777665322222212
Q ss_pred ----HHHHHHHHHcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC----------
Q 004244 258 ----NTLIDGYCKLGRIDDAFKLLRDMGLKG-IEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVP---------- 322 (766)
Q Consensus 258 ----~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---------- 322 (766)
-..++.+...++-+.|.+.++.....+ -.-+...++.++..|.+...++.|......+......+
T Consensus 280 ~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 280 EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 223444555666666776666655421 12234456666677777777777766666665511111
Q ss_pred -----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004244 323 -----------------DEVTYNTLLNGYCKEGNLHQALVLHAEMVRNG--LSPNVVTYTSLINSMCKSGNLNRAMEFFD 383 (766)
Q Consensus 323 -----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 383 (766)
+..+ ..+.-++.+....+....+.....+.. +..++..|.-+..+|...|++.+|+++|.
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred ccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1111 112222333333333333444444443 23345566677777777777777777777
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------
Q 004244 384 QMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMAR------ 457 (766)
Q Consensus 384 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------ 457 (766)
.+......-+...|-.+..+|-..|..++|.+.|+..+... +.+...--.|...+-+.|+.++|.+.++.+..
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 77666444456667777777777777777777777776642 22333444455556677777777777766432
Q ss_pred --CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CC-----------------CHH-------------
Q 004244 458 --KGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGV-----LP-----------------DTI------------- 500 (766)
Q Consensus 458 --~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p-----------------~~~------------- 500 (766)
.+..|+........+.+.+.|+.++=+.+...|+.... .| ...
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~ 597 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKAT 597 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccC
Confidence 12233333344444555666665554443333332110 00 000
Q ss_pred ------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHH
Q 004244 501 ------------------------------TYSSLIHGLCEQRRITEACELFQEMLSRGM-SPDEF----TYTTLINAYC 545 (766)
Q Consensus 501 ------------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~ 545 (766)
.+..++..+++.+++++|+.+...+..... ..+.. .-...+.+.+
T Consensus 598 ~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~ 677 (895)
T KOG2076|consen 598 DDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASL 677 (895)
T ss_pred chHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHH
Confidence 122333344444444444444444443211 00111 1112223334
Q ss_pred hcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhh
Q 004244 546 TEGDIPQALRLHDEMIQK-GFLP---DVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQN 621 (766)
Q Consensus 546 ~~g~~~~A~~~~~~~~~~-g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 621 (766)
..+++..|...++.|+.. ++.. -...|+...+.+.+.|+-.--.+++..... ..|+......++.+
T Consensus 678 ~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~g-------- 747 (895)
T KOG2076|consen 678 YARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYG-------- 747 (895)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeec--------
Confidence 444444444444444432 1111 112233222233333322222222222221 11111111111100
Q ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHh----------ccCChHHHHHHHHHHHHcCCC-CCH
Q 004244 622 VAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYD-IIIHGHS----------KVGNVQKAYDLYKKMVRSGFV-PHT 689 (766)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~----------~~g~~~~A~~~~~~m~~~~~~-p~~ 689 (766)
+....++.+..|+..+-++... .|+....+ +++-++. ++-..-+++.++.+..+.... -..
T Consensus 748 -----h~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~Q 820 (895)
T KOG2076|consen 748 -----HNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQ 820 (895)
T ss_pred -----hhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHH
Confidence 3345678899999988887764 35433332 2222222 112234566676666543211 134
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------hHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004244 690 VTIIVLVKALHTAGMNEELSQVIENILRSCRLS-----------DAELAKVLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (766)
+++-.++++|-..|-..-|+.+|+++++..|++ -..+..+|.-+|...|+..-|..++++
T Consensus 821 Ea~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 821 EAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 677789999999999999999999999985322 123445688899999999999998865
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1e-14 Score=141.22 Aligned_cols=317 Identities=15% Similarity=0.216 Sum_probs=174.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhh
Q 004244 158 HLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEM 237 (766)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 237 (766)
..|.+.++.-+|++|...|...+...--.|+...+-.+..+..-.-++.|-.|.+.| ..+..+| +.|++.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd 197 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD 197 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH
Confidence 357777888888888777777666666666554333222121122345555565554 2233333 3444433
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004244 238 GLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISR 317 (766)
Q Consensus 238 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 317 (766)
-+|+.. +.+..+|..+|.++|+--..++|.+++++-.....+.+..+||.+|.+-.- -...+++.+|..
T Consensus 198 --L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMis 266 (625)
T KOG4422|consen 198 --LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMIS 266 (625)
T ss_pred --HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHH
Confidence 233332 225567777777777777777777777777666666677777777755322 222667777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC----
Q 004244 318 KGLVPDEVTYNTLLNGYCKEGNLHQA----LVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNR-AMEFFDQMHVR---- 388 (766)
Q Consensus 318 ~g~~p~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~---- 388 (766)
..+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++...
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 77777777777777777777766543 4566677777777777777777777777666533 33333333321
Q ss_pred CCC---C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004244 389 ELR---P-NEKTYTTLINGFSQHGFLDEAYRLLNEMTKNG----FMPS---IVTYNALIKGHCTGGRVEDAVGVLHGMAR 457 (766)
Q Consensus 389 ~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 457 (766)
... | |..-|..-++.|....+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...++.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111 1 23334444555555555555555444333210 1111 11233444444555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004244 458 KGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKG 494 (766)
Q Consensus 458 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 494 (766)
.-+-|+..+...++.+.--.|.++-.-+++.+++..|
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 4444444444444454444555555555555444443
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.5e-14 Score=140.01 Aligned_cols=326 Identities=18% Similarity=0.254 Sum_probs=230.8
Q ss_pred CHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CChhhH-HHHHHHHHhCCCCcCHHH
Q 004244 180 GVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGV--GDLEMG-LRFFSEMEKNNCLANVVT 256 (766)
Q Consensus 180 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A-~~~~~~m~~~g~~~~~~~ 256 (766)
.+.+-|.|+....... +.++.-+|+.|...|++.+...--.|...-|-. .++--| .+.|-.|.+.| ..+..+
T Consensus 115 ~V~~E~nL~kmIS~~E----vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~s 189 (625)
T KOG4422|consen 115 QVETENNLLKMISSRE----VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSS 189 (625)
T ss_pred hhcchhHHHHHHhhcc----cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccc
Confidence 3456677877766533 588999999999999888887777777655433 333222 34555555555 334444
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 257 YNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCK 336 (766)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 336 (766)
| +.|.+.+ -+|+..+ ....+|..||.++|+-...+.|.+++++......+.+..+||.+|.+-.-
T Consensus 190 W--------K~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~ 254 (625)
T KOG4422|consen 190 W--------KSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY 254 (625)
T ss_pred c--------ccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh
Confidence 4 3455443 4444443 35679999999999999999999999999988778899999998876432
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 004244 337 EGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNR----AMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDE 412 (766)
Q Consensus 337 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 412 (766)
....++..+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+
T Consensus 255 ----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 255 ----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred ----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 2337899999999999999999999999999998765 45678889999999999999999999999887644
Q ss_pred -HHHHHHHHHH----CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHc
Q 004244 413 -AYRLLNEMTK----NGFM----PSIVTYNALIKGHCTGGRVEDAVGVLHGMARKG----LAPD---VVSYSTIISGFSR 476 (766)
Q Consensus 413 -A~~l~~~m~~----~g~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~ 476 (766)
|..++.++.. +.++ .|...|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....|+
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq 410 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ 410 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 5555555543 2222 344567777888888888888888876655421 1122 2234555566666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004244 477 SQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRG 529 (766)
Q Consensus 477 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 529 (766)
....+.-...|+.|+..-.-|+..+...++++..-.|.++-.-+++.++...|
T Consensus 411 ~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 411 MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 67777777777777666566666666666666666666666666666666655
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=9.3e-13 Score=134.39 Aligned_cols=509 Identities=12% Similarity=0.048 Sum_probs=406.9
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 004244 165 AVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSE 244 (766)
Q Consensus 165 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 244 (766)
=..+++...++- .-++..|...+. .... +.|+-++.+.++. ++.+...| .+|.+..-++.|..+++.
T Consensus 365 K~RVlRKALe~i-P~sv~LWKaAVe----lE~~---~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNk 431 (913)
T KOG0495|consen 365 KKRVLRKALEHI-PRSVRLWKAAVE----LEEP---EDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNK 431 (913)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHh----ccCh---HHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHH
Confidence 345666666542 334555555443 2221 5689999888875 45555544 456677889999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 004244 245 MEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDM----GLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGL 320 (766)
Q Consensus 245 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 320 (766)
..+. ++.+...|.+-...--.+|+.+...+++++- ...|+..+...|-.=...+-..|..-.+..+....+..|+
T Consensus 432 aRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv 510 (913)
T KOG0495|consen 432 AREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV 510 (913)
T ss_pred HHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Confidence 9876 5778889988877777899999999887764 5568888888998888888889999999999999888877
Q ss_pred CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 004244 321 VPD--EVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYT 398 (766)
Q Consensus 321 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 398 (766)
+-. ..||..-...|.+.+.++-|+.+|...++- .+.+...|...+..--..|..++-..+|++.... ++-....|.
T Consensus 511 Eeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwl 588 (913)
T KOG0495|consen 511 EEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWL 588 (913)
T ss_pred ccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHH
Confidence 643 457888888899999999999999999876 3457788888887777789999999999999887 344667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 004244 399 TLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQ 478 (766)
Q Consensus 399 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 478 (766)
.....+-..|+...|..++.+..+.. +.+...|..-++.......++.|..+|.+.... .|+...|.--+...--.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 88888889999999999999999875 337778888899999999999999999998875 456677766677777789
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004244 479 ELDKAFDTKREMVEKGVLPD-TITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLH 557 (766)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (766)
+.++|++++++..+. -|+ ...|..+.+.+-+.++++.|.+.|..-.+. ++.....|..|...--+.|.+-.|..++
T Consensus 666 ~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred hHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence 999999999998875 234 456778888899999999999998877665 3555667888888888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHH
Q 004244 558 DEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNE 637 (766)
Q Consensus 558 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~ 637 (766)
+...-++ +.+...|...|..-.+.|+.+.|..++.+.++. ++-+...|...| ...-+.++-..
T Consensus 743 drarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI---------------~le~~~~rkTk 805 (913)
T KOG0495|consen 743 DRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAI---------------WLEPRPQRKTK 805 (913)
T ss_pred HHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHH---------------HhccCcccchH
Confidence 9998764 668889999999999999999999999999886 555666676666 56666666555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 638 ADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENIL 716 (766)
Q Consensus 638 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (766)
+...+++ ..-|+.....+...+....++++|.+.|.+.++. .||. .+|..+......+|.-++-.+++.+..
T Consensus 806 s~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 806 SIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5544443 3347777788899999999999999999999955 4655 788889999999999999999999998
Q ss_pred HcC
Q 004244 717 RSC 719 (766)
Q Consensus 717 ~~~ 719 (766)
...
T Consensus 879 ~~E 881 (913)
T KOG0495|consen 879 TAE 881 (913)
T ss_pred ccC
Confidence 886
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=3.4e-12 Score=135.79 Aligned_cols=592 Identities=13% Similarity=0.068 Sum_probs=368.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 004244 155 SYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGD 234 (766)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 234 (766)
.+++ |+.++|..++.++.+.. ......|..|...+-..|+ ..++...+-.....+ +-|...|..+.....+.|+
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd---~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGD---IEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHccc---HHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 3455 99999999999998764 3456688899999988884 388888877665553 5677899999999999999
Q ss_pred hhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHHcCChhHHHH
Q 004244 235 LEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISY----NVIINGLCKEGRLKETKG 310 (766)
Q Consensus 235 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~ 310 (766)
++.|.-.|.+.++.. +++...+---+..|-+.|+..+|..-|.++.....+.|..-. -.+++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999985 556666666778888999999999999999876432222222 234566777787799999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------------------------CCCChHHH
Q 004244 311 ILNEISRKG-LVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNG---------------------------LSPNVVTY 362 (766)
Q Consensus 311 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---------------------------~~~~~~~~ 362 (766)
.++.....+ -..+...++.++..+.+...++.|......+.... ..++..+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 999888732 12345567888888999999999988887776622 2222222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004244 363 TSLINSMCKSGNLNRAMEFFDQMHVRE--LRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHC 440 (766)
Q Consensus 363 ~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~ 440 (766)
--+.-++......+....+.....+.. +.-+...|.-+.+++...|++.+|..+|..+.......+...|-.+..+|-
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122233334444444444555555554 334577889999999999999999999999998866667889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhc
Q 004244 441 TGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEK--------GVLPDTITYSSLIHGLCEQ 512 (766)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~ 512 (766)
..|..++|.+.++..+...+. +...--.|...+.+.|+.++|.+.+..+..- +..|+........+.+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 999999999999999987433 5666677788899999999999999986532 2344555555566677888
Q ss_pred CCHHHHHHHHHHHHHCC-----CCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHHH------HHCC
Q 004244 513 RRITEACELFQEMLSRG-----MSP-----------------DEFTYTTLINAYCTEGDIPQALRLHDEM------IQKG 564 (766)
Q Consensus 513 g~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~g 564 (766)
|+.++-+.....|+... +-| ...+...++.+-.+.++.....+-...- ...|
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 88887665555554321 001 1111222222322333222211111110 0111
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHH---hHHHHhhhhc------hhhhh------------
Q 004244 565 FLPDV--VTYSVLINGLNKQARTMEAKKLLLKLFYDES-VPSDV---IYNTLIENCT------NIEFQ------------ 620 (766)
Q Consensus 565 ~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~p~~~---~~~~ll~~~~------~~~~~------------ 620 (766)
+.-+. ..+.-++..+++.+++++|..+...+..... .-+.. ....+.-.|+ +..+.
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 11111 1233445555666666666666555544311 11111 1111110000 00000
Q ss_pred -------hHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004244 621 -------NVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTII 693 (766)
Q Consensus 621 -------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 693 (766)
.++...+...+.|+-.--.+.+..+.......++..+...++.+...+.+..|+..+-++... .||....+
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~n 777 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLIN 777 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHH
Confidence 000011222222222222222222222111112223333344455678888899888777643 56643333
Q ss_pred -HHHHHHH----------hcCChHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC
Q 004244 694 -VLVKALH----------TAGMNEELSQVIENILRSCRL-SDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLP 757 (766)
Q Consensus 694 -~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 757 (766)
+++.++. ++-..-++..++.+-.+.... ..-.++.+++.+|...|-..-|..++++..+....+
T Consensus 778 l~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~ 853 (895)
T KOG2076|consen 778 LCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKD 853 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccc
Confidence 3333332 122344567777666655322 245667789999999999999999999998876443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=1.8e-14 Score=140.28 Aligned_cols=490 Identities=16% Similarity=0.167 Sum_probs=293.2
Q ss_pred hHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhcCChhhHHHHHHHHHhCCCCcC------HH
Q 004244 183 SYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNV-LIRGFCGVGDLEMGLRFFSEMEKNNCLAN------VV 255 (766)
Q Consensus 183 ~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~ 255 (766)
+|..|.+.-.+..-+++..+|+..|+-+++...-||.-.... +.+.+.+..++.+|+++++-.... .|+ ..
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHH
Confidence 455554443333333567889999988888777777554432 456678888899999988877664 232 23
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH--------
Q 004244 256 TYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTY-------- 327 (766)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-------- 327 (766)
..+.+.-.+.+.|+++.|...|+...+. .||..+-..++-++..-|+-++..+.|.+|......||..-|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4455555677889999999999887665 477666555555555678888888889888765333332211
Q ss_pred HHHHHHHHhcCC-----------hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 004244 328 NTLLNGYCKEGN-----------LHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKT 396 (766)
Q Consensus 328 ~~li~~~~~~g~-----------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 396 (766)
..|+.-..+... .++++-.-.++..--+.|+-. .| .+-.++.++.-....+..+.
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la~dl-- 421 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELAIDL-- 421 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhhhhh--
Confidence 112221111111 111111111111111111100 00 11112222211111000010
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 397 YTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIK--GHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGF 474 (766)
Q Consensus 397 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 474 (766)
--.-...+.+.|+++.|.++++-+.+..-..-...-+.|-. .+..-.++.+|.+.-+......- -+......-...-
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIA 500 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCcee
Confidence 01112357788999999998888877543322222232222 22223467777777666654321 1222222222334
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004244 475 SRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQAL 554 (766)
Q Consensus 475 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (766)
...|++++|.+.|++.....-.-....|+ +.-.+-..|+.++|+..|-++... +..+..+...+.+.|--..+..+|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 56788999999999888753221112222 222466788999999988877653 2346667778888888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCC
Q 004244 555 RLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGL 634 (766)
Q Consensus 555 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~ 634 (766)
+++.+.... ++.|+.....|.+.|-+.|+-.+|.+..-+-.+- ++-+..+..-+. ..|....-
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~---------------ayyidtqf 641 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLA---------------AYYIDTQF 641 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHH---------------HHHHhhHH
Confidence 998887765 6778888889999999999998888876554332 233333333333 56777778
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004244 635 MNEADRVFELMLQRNHMPNEAVYDIIIHGH-SKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIE 713 (766)
Q Consensus 635 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 713 (766)
+++|+..|++..- +.|+..-|..++..| .+.|++.+|+++++....+ ++.|..+..-|++.+...|. .+|.++.+
T Consensus 642 ~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~ 717 (840)
T KOG2003|consen 642 SEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYAD 717 (840)
T ss_pred HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHH
Confidence 8899999988776 568888887776554 4689999999999887754 56677788888888777664 33444433
Q ss_pred H
Q 004244 714 N 714 (766)
Q Consensus 714 ~ 714 (766)
+
T Consensus 718 k 718 (840)
T KOG2003|consen 718 K 718 (840)
T ss_pred H
Confidence 3
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=5.6e-12 Score=124.08 Aligned_cols=469 Identities=14% Similarity=0.101 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH-HHHHHHHH
Q 004244 219 VYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNL-ISYNVIIN 297 (766)
Q Consensus 219 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~ 297 (766)
...|-....-=-.++++..|..+|++..... ..+...|.-.+.+-.++..+..|..++++.... -|-+ ..|.-.+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 3334333333344556666666666666544 335555666666666666666666666665442 2222 23333333
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 004244 298 GLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNR 377 (766)
Q Consensus 298 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 377 (766)
.--..|++..|.++|++-.+ ..|+...|.+.|+.-.+...++.|..+++..+-. .|++..|.-....--++|....
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 33445666666666666655 4466666666666666666666666666665542 3666666666666666666666
Q ss_pred HHHHHHHHHHC-C-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCH---HHHH-
Q 004244 378 AMEFFDQMHVR-E-LRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPS--IVTYNALIKGHCTGGRV---EDAV- 449 (766)
Q Consensus 378 A~~~~~~m~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~---~~A~- 449 (766)
|..+|+...+. | -..+...+.+....-.++..++.|.-+|+-..++= +.+ ...|..+...--+-|+. ++++
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 66666655543 1 00112233333333344555666666666655541 112 22333333322233432 2222
Q ss_pred ----HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-----HH---HhcCCH
Q 004244 450 ----GVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTI--TYSSLIH-----GL---CEQRRI 515 (766)
Q Consensus 450 ----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~-----~~---~~~g~~ 515 (766)
--++.+++.+. .|-.+|--.++.-...|+.+...++|++.+.. ++|-.. .|.-.|- ++ ....++
T Consensus 305 ~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 12333444432 36677777777777778888888888877764 333211 1211111 11 245778
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004244 516 TEACELFQEMLSRGMSPDEFTYTTLINAY----CTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKL 591 (766)
Q Consensus 516 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 591 (766)
+.+.++|+..++. ++...+||..+--+| .++.++..|.+++...+ |.-|...++...|..-.+.++++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888874 455666666554444 36778888888888776 4478888888888888888888888888
Q ss_pred HHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCh
Q 004244 592 LLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNH-MPNEAVYDIIIHGHSKVGNV 670 (766)
Q Consensus 592 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~ 670 (766)
+++.++-+ +.+..+|.... ..-...|+.+.|..+|+-+++... ......|.+.|+--...|.+
T Consensus 460 YEkfle~~-Pe~c~~W~kya---------------ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYA---------------ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHH---------------HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 88888742 23445555444 444567888888888888876421 22355677777777788888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHHc
Q 004244 671 QKAYDLYKKMVRSGFVPHTVTIIVLVKALH-----TAG-----------MNEELSQVIENILRS 718 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 718 (766)
+.|..+++++++. .+...+|..++.--. +.| ....|..+|+++...
T Consensus 524 ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 524 EKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 8888888888854 355556665554433 334 566788888887654
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=2.2e-13 Score=132.85 Aligned_cols=475 Identities=14% Similarity=0.101 Sum_probs=309.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHH-HHHHHHHHcCChhHHHHHHHHHhhCCCCCC------HHHHHHHH
Q 004244 224 VLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYN-TLIDGYCKLGRIDDAFKLLRDMGLKGIEPN------LISYNVII 296 (766)
Q Consensus 224 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~~~~~li 296 (766)
.|..-|.......+|+..++-+.+....||..... .+.+.+.+..++.+|++.++-.... .|+ +...+.+.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nig 283 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcC
Confidence 34455666677888999999888877777754432 3446778888999999988766543 232 23445555
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH--------HHHHHH
Q 004244 297 NGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTY--------TSLINS 368 (766)
Q Consensus 297 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--------~~li~~ 368 (766)
-.|.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|......+|..-| ..|+.-
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5678899999999999988874 488777666777777789999999999998865333332211 222222
Q ss_pred HHhcCCH-----------HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 369 MCKSGNL-----------NRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIK 437 (766)
Q Consensus 369 ~~~~g~~-----------~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~ 437 (766)
-.++..+ ++++-.--+++.--+.|+-. .| .+-.++.++.-.......+.. .+ -..
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la~dle-i~-ka~ 427 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELAIDLE-IN-KAG 427 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhhhhhh-hh-HHH
Confidence 2222211 11111111111111111110 00 001111111110000000110 01 123
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004244 438 GHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSR--SQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRI 515 (766)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 515 (766)
-+.+.|+++.|.+++.-..+..-+.....-+.|-..+.- -.++..|.+.-+...... .-+......-...-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 467899999999999988876433333333333333322 346777777777665432 12333333333445567999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 516 TEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKL 595 (766)
Q Consensus 516 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 595 (766)
++|.+.|++.+..+.......|| +.-.+-..|++++|++.|-.+..- +..+......+...|....+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999998775333333343 344567889999999999877643 2346777778888898999999999999888
Q ss_pred HhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 004244 596 FYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYD 675 (766)
Q Consensus 596 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 675 (766)
... ++.|+.....+. +.|-+.|+-..|.+.+-.-... ++-+..+...|...|....-+++|+.
T Consensus 585 ~sl-ip~dp~ilskl~---------------dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLA---------------DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred ccc-CCCCHHHHHHHH---------------HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 763 444555555555 8999999999998877655543 33378888888888888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Q 004244 676 LYKKMVRSGFVPHTVTIIVLVKAL-HTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGN 739 (766)
Q Consensus 676 ~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 739 (766)
+|+++. -++|+..-|-.++..| .+.|++++|...++.+.++- |.+..+..-|+......|-
T Consensus 648 y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf-pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 648 YFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF-PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-ccchHHHHHHHHHhccccc
Confidence 999986 4689999998766554 57899999999999998875 7778888778887776664
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.6e-11 Score=118.53 Aligned_cols=469 Identities=11% Similarity=0.083 Sum_probs=349.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 253 NVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLN 332 (766)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 332 (766)
+...|--....-..++++..|..+|++..... ..+...|.-.+..-.++..+..|..++++.+..-...|. .|--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 45555555555566788999999999998765 347778888888888999999999999999884322222 3334445
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 004244 333 GYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDE 412 (766)
Q Consensus 333 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 412 (766)
.--..|++..|.++|+.-.+- .|+...|.+.|+.-.+...++.|..++++..-. .|++.+|-.....-.++|....
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 556789999999999998864 799999999999999999999999999998875 5899999999999999999999
Q ss_pred HHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCC---HHHHHH-
Q 004244 413 AYRLLNEMTKN-G-FMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPD-VVSYSTIISGFSRSQE---LDKAFD- 485 (766)
Q Consensus 413 A~~l~~~m~~~-g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~- 485 (766)
|..+|+...+. | -..+...+.+....-..+..++.|.-+|+-.++.-++.. ...|..+...--+-|+ +++++-
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 99999988764 2 112233455555555567789999999998888633321 3445544444344454 444432
Q ss_pred ----HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHH---H-HH----HHHhcCChH
Q 004244 486 ----TKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEF--TYTT---L-IN----AYCTEGDIP 551 (766)
Q Consensus 486 ----~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~---l-~~----~~~~~g~~~ 551 (766)
-++.++..+ +-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.. | |+ .-....+++
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 234455544 347888888888888899999999999999986 455322 1111 1 11 113678999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHh
Q 004244 552 QALRLHDEMIQKGFLPDVVTYSVLI----NGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLK 627 (766)
Q Consensus 552 ~A~~~~~~~~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~ 627 (766)
.+.++++..++. ++....|+..+- .-..++.+...|.+++...+. .-|...++..-| .
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YI---------------e 445 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYI---------------E 445 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHH---------------H
Confidence 999999999984 555555555443 334578999999999998875 678888888888 7
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCh
Q 004244 628 GFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGF-VPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~ 705 (766)
.-.+.++++....++++.++.+ | +..+|...+..-...|+++.|..+|+-+++... ......|...++--...|.+
T Consensus 446 lElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 7788999999999999999964 5 788898888888889999999999999985431 12236777888888899999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHh-----cCC-----------ChhHHHHHHHHHH
Q 004244 706 EELSQVIENILRSCRLSDAELAKVLVEINH-----KEG-----------NMDAVLNVLTEMA 751 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 751 (766)
++|..++++.++.. ....+|...+..-. +.| +...|.++|++..
T Consensus 524 ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 524 EKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 99999999999885 44456655554333 444 5667788887654
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.64 E-value=4e-12 Score=134.34 Aligned_cols=533 Identities=14% Similarity=0.118 Sum_probs=295.9
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 004244 169 VNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKN 248 (766)
Q Consensus 169 ~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 248 (766)
+..+...|+.|+.+||.+++..|+..|.. +.|- +|.-|.-...+.+...|+.++.+..+.++.+.+.
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdi---eaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDI---EAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCC---cccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 34456667777777777777777777732 3333 7776766666677777777777777777777665
Q ss_pred CCCcCHHHHHHHHHHHHHcCChhH---HHHHHHHH----hhCCC-----------------CCCHHHHHHHHHHHHHcCC
Q 004244 249 NCLANVVTYNTLIDGYCKLGRIDD---AFKLLRDM----GLKGI-----------------EPNLISYNVIINGLCKEGR 304 (766)
Q Consensus 249 g~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~m----~~~g~-----------------~p~~~~~~~li~~~~~~g~ 304 (766)
.|...||+.|..+|...|++.. ..+.++.. ...|+ -||. ...+....-.|-
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~egl 154 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGL 154 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHH
Confidence 4666777777777777777543 22211111 11111 1221 122333344555
Q ss_pred hhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004244 305 LKETKGILNEISRKGL-VPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFD 383 (766)
Q Consensus 305 ~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 383 (766)
++.+++++..+..... .|..+ .++-+..... ..+++........-.|+..+|.++++.-...|+.+.|..++.
T Consensus 155 waqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 6666666655543211 11111 2333333222 223333332221114889999999999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004244 384 QMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPD 463 (766)
Q Consensus 384 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 463 (766)
+|.++|++.+..-|..|+-+ .+...-+..+++-|.+.|+.|+..|+...+-.+.++|....+......-. | ..
T Consensus 229 emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h--g--~t 301 (1088)
T KOG4318|consen 229 EMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH--G--FT 301 (1088)
T ss_pred HHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh--h--hh
Confidence 99999999888888888776 77888888899999999999999999888877777555333222111000 0 01
Q ss_pred HHHHHHHHHHHHccCCHH-----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHH
Q 004244 464 VVSYSTIISGFSRSQELD-----KAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRG--M-SPDEF 535 (766)
Q Consensus 464 ~~~~~~li~~~~~~g~~~-----~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~~~ 535 (766)
...+..+..+.....+.+ -....+++..-.|+.....+|...+. ...+|+-++..++-..|..-- . ..++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 222222222211111111 11222222222244333344443333 333677777777777765321 1 12333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCcHHhH-----
Q 004244 536 TYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNK---QARTMEAKKLLLKLFYDESVPSDVIY----- 607 (766)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~~~~~~~~p~~~~~----- 607 (766)
.|..++.-|.+.-+..-...++. ...++.. .....+..+++... .|+..--
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~----------------~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~L 439 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYY----------------AGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGL 439 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH----------------HHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhh
Confidence 45444444433221111111111 1111111 11111222222211 1111100
Q ss_pred --HHHhhhh------chhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 004244 608 --NTLIENC------TNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKK 679 (766)
Q Consensus 608 --~~ll~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 679 (766)
+-++... ...-.+....++..++..-+..+++..-++.... .- ...|..|+..++...+.+.|..+..+
T Consensus 440 ss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf--~g~ya~Li~l~~~hdkle~Al~~~~e 516 (1088)
T KOG4318|consen 440 SSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LF--AGLYALLIKLMDLHDKLEYALSFVDE 516 (1088)
T ss_pred hHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--hhHHHHHhhhHHHHHHHHHHHhchhh
Confidence 0000000 0000122345556777777777776555444432 11 25688888888899999999998888
Q ss_pred HHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 680 MVRS--GFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCR--LSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 680 m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
.... .+..|..-+..+.+.+.+.+...++.++++++-+.-. +........+.+.....|+.+.-.++.+-+...|+
T Consensus 517 ~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 517 IDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred hcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 7522 2345556677888888888999999888888776421 22355566777778888888888888888877777
Q ss_pred CC
Q 004244 756 LP 757 (766)
Q Consensus 756 ~~ 757 (766)
.-
T Consensus 597 ~e 598 (1088)
T KOG4318|consen 597 SE 598 (1088)
T ss_pred hh
Confidence 55
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.8e-15 Score=152.41 Aligned_cols=261 Identities=17% Similarity=0.164 Sum_probs=111.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 469 TIISGFSRSQELDKAFDTKREMVEKG-VLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTE 547 (766)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 547 (766)
.+...+.+.|++++|++++++..... ...|...|..+.......++.++|...++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44677888899999999886654443 23355556666667777889999999999998775 3356667777776 688
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHHhHHHHhhhhchhhhhhHHHHH
Q 004244 548 GDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDE-SVPSDVIYNTLIENCTNIEFQNVAALL 626 (766)
Q Consensus 548 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~l~ 626 (766)
+++++|.+++....++ .++...+..++..+.+.|+++++.++++++.... ..++...|....
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a--------------- 153 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALA--------------- 153 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHH---------------
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHH---------------
Confidence 9999999998887765 3566777788888889999999999999977543 234555555555
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
..+.+.|+.++|++.+++.++. .| |....+.++..+...|+.+++.++++...+.. +.|+..+..++.++...|+.
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccc
Confidence 7888999999999999999984 46 57788899999999999999999998887653 45567788899999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 706 EELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
++|..+++++.+.. |.|+.....+++++...|+.++|.+++++...
T Consensus 231 ~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 231 EEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 99999999999987 77888888999999999999999999887654
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=3.4e-12 Score=135.50 Aligned_cols=291 Identities=10% Similarity=0.042 Sum_probs=174.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 004244 406 QHGFLDEAYRLLNEMTKNGFMPS-IVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAF 484 (766)
Q Consensus 406 ~~g~~~~A~~l~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 484 (766)
..|+++.|.+.+.+..+.. |+ ...+-.........|+.+.|...+....+....+.....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3566666666666655542 32 22233334555566666666666666655432222223333455566667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHhcCChHHHHHHHHHH
Q 004244 485 DTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYT-TLIN---AYCTEGDIPQALRLHDEM 560 (766)
Q Consensus 485 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~---~~~~~g~~~~A~~~~~~~ 560 (766)
..++++.+..+. +...+..+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 777776666433 4556666666777777777777777777766532 222221 1111 112223333333444444
Q ss_pred HHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhH--HHHhhhhchhhhhhHHHHHhhhhhcCCH
Q 004244 561 IQKG---FLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIY--NTLIENCTNIEFQNVAALLKGFCMKGLM 635 (766)
Q Consensus 561 ~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~~~l~~~~~~~g~~ 635 (766)
.+.. .+.+...+..++..+...|+.++|.+.+++.++. .||.... ..+.. -.....++.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~--------------~~~l~~~~~ 315 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLP--------------IPRLKPEDN 315 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHH--------------hhhcCCCCh
Confidence 4431 1136777778888888888888888888888874 3333310 11110 223445777
Q ss_pred HHHHHHHHHHHhCCCCC-CH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004244 636 NEADRVFELMLQRNHMP-NE--AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVI 712 (766)
Q Consensus 636 ~~A~~~~~~~~~~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 712 (766)
+.+.+.+++..+. .| |+ ....+++..+.+.|++++|.+.|++.......|+...+..++..+.+.|+.++|.+++
T Consensus 316 ~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 316 EKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred HHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888777764 34 44 5667888888888888888888885433345688877778888888888888888888
Q ss_pred HHHHHc
Q 004244 713 ENILRS 718 (766)
Q Consensus 713 ~~~~~~ 718 (766)
++.+..
T Consensus 394 ~~~l~~ 399 (409)
T TIGR00540 394 QDSLGL 399 (409)
T ss_pred HHHHHH
Confidence 886543
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=2.9e-12 Score=135.20 Aligned_cols=287 Identities=12% Similarity=0.065 Sum_probs=168.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 004244 407 HGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDT 486 (766)
Q Consensus 407 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 486 (766)
.|++++|.+.+....+..-.| ...|........+.|+++.|...+.++.+....+...........+...|+++.|.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455666665555444331111 1122222333355566666666666665532221111111224455566666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 004244 487 KREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDE-------FTYTTLINAYCTEGDIPQALRLHDE 559 (766)
Q Consensus 487 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (766)
++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 6666655432 4555556666666666666666666666655432211 1222233333333444555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHH
Q 004244 560 MIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEAD 639 (766)
Q Consensus 560 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 639 (766)
+.+. .+.++.....+...+...|+.++|.+.+++..+. .|+.... ++ .+....++.++++
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l---------------~~~l~~~~~~~al 314 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL---------------IPRLKTNNPEQLE 314 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH---------------HhhccCCChHHHH
Confidence 5433 3456677777788888888888888888887763 3443211 11 3344557888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 640 RVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 640 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
+..+...+.. +.|+..+..++..+.+.|+|++|.+.|+++.+ ..|+...+..+...+.+.|+.++|..++++.+..
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888877652 22666677888888888888888888888874 3688877778888888888888888888877654
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=4.2e-09 Score=108.11 Aligned_cols=537 Identities=12% Similarity=0.110 Sum_probs=309.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCC------CCCC
Q 004244 145 SSAVIDLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSR------VSPN 218 (766)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g------~~~~ 218 (766)
...+|+..++-....|.++-++.++++..+ .++..-+-.+.-+++.++ + ++|-+.+...+... -+.+
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~--~-~eaa~~la~vln~d~f~sk~gkSn 209 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDR--L-DEAAQRLATVLNQDEFVSKKGKSN 209 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccc--h-HHHHHHHHHhcCchhhhhhcccch
Confidence 457888889988899999999999998885 344456777888888884 3 88888888775421 2445
Q ss_pred HHHHHHHHHHHHhcCChh---hHHHHHHHHHhCCCCcC--HHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 004244 219 VYTYNVLIRGFCGVGDLE---MGLRFFSEMEKNNCLAN--VVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYN 293 (766)
Q Consensus 219 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 293 (766)
...|.-+-+...+.-+.- ....+++.+... -+| ...|++|.+.|.+.|.+++|.+++++.... ...+.-|+
T Consensus 210 ~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt 285 (835)
T KOG2047|consen 210 HQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFT 285 (835)
T ss_pred hhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHH
Confidence 556666666555543332 223444444433 234 357899999999999999999999887653 23455566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----------CCCCChH
Q 004244 294 VIINGLCKEGRLKETKGILNEIS--RKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRN-----------GLSPNVV 360 (766)
Q Consensus 294 ~li~~~~~~g~~~~a~~~~~~m~--~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------g~~~~~~ 360 (766)
.+.++|..-..-.-+..+ + +. +.+-.-+..... -...-|+.+... .-+.++.
T Consensus 286 ~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~dl~-------------~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~ 350 (835)
T KOG2047|consen 286 QIFDAYAQFEESCVAAKM-E-LADEESGNEEDDVDLE-------------LHMARFESLMNRRPLLLNSVLLRQNPHNVE 350 (835)
T ss_pred HHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhhhHH-------------HHHHHHHHHHhccchHHHHHHHhcCCccHH
Confidence 667777643221111111 1 11 111111122111 112222222211 1123455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHH
Q 004244 361 TYTSLINSMCKSGNLNRAMEFFDQMHVRELRPN------EKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPS---IVT 431 (766)
Q Consensus 361 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~ 431 (766)
.|..-+.. ..|+..+-...|.+..+. +.|. ...|..+.+.|-..|+++.|..+|++..+-..+-- ..+
T Consensus 351 eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 351 EWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 55544443 356677777777777654 2221 34567777778888888888888888776543321 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 432 YNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCE 511 (766)
Q Consensus 432 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 511 (766)
|......-.+..+++.|..+++....- |.... ..+...+..-.+. ++ -+...|...++..-.
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~r-lh---------rSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQAR-LH---------RSLKIWSMYADLEES 489 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHHH-HH---------HhHHHHHHHHHHHHH
Confidence 444455555666777777776665432 22211 1222222211110 11 134566666766666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHH
Q 004244 512 QRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDV-VTYSVLINGLNK---QARTME 587 (766)
Q Consensus 512 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~---~g~~~~ 587 (766)
.|-++....+|+++++..+. ++.........+-...-++++.+++++-+..=-.|++ ..|+..+.-+.+ .-+.+.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 77778888888888776432 2222222222334555677777777765554223443 356655555433 346778
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHh
Q 004244 588 AKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP--NEAVYDIIIHGHS 665 (766)
Q Consensus 588 A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 665 (766)
|..+|++.++ |++|...-+.-++- + ..--+.|-...|+.+++++... +.+ -...||..|.--.
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlY--A-----------~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLY--A-----------KLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHH--H-----------HHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 8888888877 56655433332220 0 2223447777788888886653 333 2456777766555
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCChHHHHHHHHHHHhcCCChh
Q 004244 666 KVGNVQKAYDLYKKMVRSGFVPHT---VTIIVLVKALHTAGMNEELSQVIENILRS-CRLSDAELAKVLVEINHKEGNMD 741 (766)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 741 (766)
..--+....++|+++++. -||. ..+...+..-++.|..++|..++...-+. +|..+...|...=+.-.+.|+-+
T Consensus 634 e~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 544456667777877754 4554 33445566667888888888888877766 44445666766666667777744
Q ss_pred HHHHH
Q 004244 742 AVLNV 746 (766)
Q Consensus 742 ~A~~~ 746 (766)
-..++
T Consensus 712 T~keM 716 (835)
T KOG2047|consen 712 TYKEM 716 (835)
T ss_pred HHHHH
Confidence 44333
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=5.2e-12 Score=125.01 Aligned_cols=120 Identities=10% Similarity=0.003 Sum_probs=54.2
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004244 475 SRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQAL 554 (766)
Q Consensus 475 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (766)
.-.|+.-.|..-|+..+.....++. .|--+...|...++.++..+.|.+..+.+ +.++.+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3344555555555555544333222 13333334455555555555555555443 333444444444444445555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004244 555 RLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFY 597 (766)
Q Consensus 555 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 597 (766)
.=|++.+... +.+...|..+.-+..+.++++++...|++..+
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk 456 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK 456 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554431 22233343344444445555555555555544
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.6e-11 Score=120.20 Aligned_cols=419 Identities=15% Similarity=0.118 Sum_probs=256.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 004244 222 YNVLIRGFCGVGDLEMGLRFFSEMEKNNCLAN-VVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPN-LISYNVIINGL 299 (766)
Q Consensus 222 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~ 299 (766)
+....+-|.+.|++++|++.+.+.++. .|| .+-|.....+|...|++++..+.-.+..+. .|+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 444566688889999999999988886 466 777888888888899998888877777664 455 34555566667
Q ss_pred HHcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CC--CCCChHHHHHHHHHHHhcCCH
Q 004244 300 CKEGRLKETKGILNEISR-KGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVR-NG--LSPNVVTYTSLINSMCKSGNL 375 (766)
Q Consensus 300 ~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g--~~~~~~~~~~li~~~~~~g~~ 375 (766)
-..|++++|+.=+.-.-- .|+. |..+--.+=+.+-+ .|..-..+-.+ .+ +-|+.....+....+-.. +
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~ 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--P 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--c
Confidence 677777776532211111 1111 11111100011111 12222222112 21 223333322222222110 0
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCC-CC-----CC------HHHHHHHHHH
Q 004244 376 NRAMEFFDQMHVRELRPNEKTYTTLINGFSQ--H---GFLDEAYRLLNEMTKNG-FM-----PS------IVTYNALIKG 438 (766)
Q Consensus 376 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~---g~~~~A~~l~~~m~~~g-~~-----~~------~~~~~~ll~~ 438 (766)
. .....+...+...+..++.. . ..+.+|...+.+-.... .. .| ..+.......
T Consensus 266 ~----------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 266 K----------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred c----------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0 00000000111111111110 0 01222332222211100 00 01 1111111122
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004244 439 HCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEA 518 (766)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 518 (766)
+.-.|+.-.|..-|+..+.....+ ...|--+...|...++.++-.+.|.+..+.+.. |+.+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 334688899999999998875442 333777778899999999999999999988655 667777778888888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004244 519 CELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYD 598 (766)
Q Consensus 519 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 598 (766)
..-|++.+... +.+...|..+.-+.-+.++++++...|++.+++ ++..+..|+-....+..++++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999999875 556777777777778999999999999999987 7778899999999999999999999999999873
Q ss_pred CCCCcHH--hH--HHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHH
Q 004244 599 ESVPSDV--IY--NTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKA 673 (766)
Q Consensus 599 ~~~p~~~--~~--~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 673 (766)
.|+.. .. ..++. -++ -...-.+++..|..++++..+ ++| ....|..|...-.+.|+.++|
T Consensus 492 --E~~~~~~~v~~~plV~----------Ka~-l~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVH----------KAL-LVLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred --ccccccccccchhhhh----------hhH-hhhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHH
Confidence 34311 10 01110 000 111234888999999999888 445 667888888888899999999
Q ss_pred HHHHHHHH
Q 004244 674 YDLYKKMV 681 (766)
Q Consensus 674 ~~~~~~m~ 681 (766)
+++|++..
T Consensus 557 ielFEksa 564 (606)
T KOG0547|consen 557 IELFEKSA 564 (606)
T ss_pred HHHHHHHH
Confidence 99998865
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.7e-11 Score=118.38 Aligned_cols=367 Identities=13% Similarity=0.074 Sum_probs=241.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH-
Q 004244 319 GLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTY- 397 (766)
Q Consensus 319 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~- 397 (766)
+...|...+-.....+-+.|....|+..|...+.. .+..-..|..|.... .+.+.+..+. .. .+.|....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l~----~~-l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSILV----VG-LPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHHH----hc-CcccchHHH
Confidence 44445544444444566788888999888887764 233444454444332 3333332222 11 12121111
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q 004244 398 -TTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLA--PDVVSYSTIISGF 474 (766)
Q Consensus 398 -~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~ 474 (766)
--+..++-...+.+++..-.+.....|++.+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++..-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1234455556678888888888888887766666666666667788899999999998887321 2566776665432
Q ss_pred HccCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004244 475 SRSQELD-KAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQA 553 (766)
Q Consensus 475 ~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 553 (766)
.....+. -|..++. +- +--+.|..++.+-|.-.++.+.|...|++.++.+ +.....|+.+.+-|....+...|
T Consensus 310 ~~~skLs~LA~~v~~-id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSN-ID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred hhhHHHHHHHHHHHH-hc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 2222221 1222211 11 1234567777777888888888888888888875 44566777888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcC
Q 004244 554 LRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKG 633 (766)
Q Consensus 554 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g 633 (766)
++-++..++. .+-|-..|-.+..+|.-.+-..-|+-.|++...- .+-|...|.++. ++|.+.+
T Consensus 384 i~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG---------------~CY~kl~ 446 (559)
T KOG1155|consen 384 IESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALG---------------ECYEKLN 446 (559)
T ss_pred HHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHH---------------HHHHHhc
Confidence 8888888876 3667788888888888888888888888888773 233566677766 8888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH----cCCCCC-H-HHHHHHHHHHHhcCChHH
Q 004244 634 LMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVR----SGFVPH-T-VTIIVLVKALHTAGMNEE 707 (766)
Q Consensus 634 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~-~~~~~l~~~~~~~g~~~~ 707 (766)
+.++|++.|......|.. +...+..|+..|-+.++.++|...|++-++ .|...+ . ....-|..-+.+.+++++
T Consensus 447 ~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 888888888888876532 557788888888888888888888887654 232222 1 233345566667788888
Q ss_pred HHHHHHHHHHc
Q 004244 708 LSQVIENILRS 718 (766)
Q Consensus 708 A~~~~~~~~~~ 718 (766)
|..+..++..-
T Consensus 526 As~Ya~~~~~~ 536 (559)
T KOG1155|consen 526 ASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHhcC
Confidence 77766665543
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=7.3e-12 Score=132.93 Aligned_cols=290 Identities=14% Similarity=0.068 Sum_probs=209.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004244 440 CTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEAC 519 (766)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 519 (766)
...|+++.|.+.+....+.... ....+-.....+.+.|+.+.|.+.+.+..+....++..........+...|++++|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3679999999999888776432 233344556778889999999999999877643333334444577888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHH
Q 004244 520 ELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYS----VLINGLNKQARTMEAKKLLLKL 595 (766)
Q Consensus 520 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~----~li~~~~~~g~~~~A~~l~~~~ 595 (766)
..++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+.. +...+. ....++...+..+++.+.+.++
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999985 556778889999999999999999999999988643 333231 1112223334444444566666
Q ss_pred HhCCCC---CcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccCC
Q 004244 596 FYDESV---PSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAV---YDIIIHGHSKVGN 669 (766)
Q Consensus 596 ~~~~~~---p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~ 669 (766)
...... .+...+..+. ..+...|+.++|.+.+++..+.. ||... ...........++
T Consensus 252 ~~~~p~~~~~~~~l~~~~a---------------~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALA---------------EHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHCCHHHhCCHHHHHHHH---------------HHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCC
Confidence 553211 2555555555 88999999999999999999853 43331 1222233345688
Q ss_pred hHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 004244 670 VQKAYDLYKKMVRSGFVPHT---VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNV 746 (766)
Q Consensus 670 ~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 746 (766)
.+.+.+.+++..+. .|+. ....++++.+.+.|++++|.++|+++......|+...+..++..+.+.|+.++|.++
T Consensus 315 ~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 315 NEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred hHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999998854 4554 455689999999999999999999544332235555577999999999999999999
Q ss_pred HHHHH
Q 004244 747 LTEMA 751 (766)
Q Consensus 747 ~~~m~ 751 (766)
+++..
T Consensus 393 ~~~~l 397 (409)
T TIGR00540 393 RQDSL 397 (409)
T ss_pred HHHHH
Confidence 98853
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=1.8e-11 Score=129.48 Aligned_cols=486 Identities=15% Similarity=0.138 Sum_probs=242.8
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 004244 205 EVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKG 284 (766)
Q Consensus 205 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 284 (766)
.++..+...|+.||.+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46667788899999999999999999999999998 9999988888888899999999998888887766
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCChHHH
Q 004244 285 IEPNLISYNVIINGLCKEGRLKETKGILNE-ISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVR-NGLSPNVVTY 362 (766)
Q Consensus 285 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~~~~~~~ 362 (766)
.|...||+.+..+|...|++.. .+..++ |.. ++..+...|.-..-..++..+.- .+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~------------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~-- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLES------------INQSFSDHGVGSPERWFLMKIHCCPHSLPDAE-- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHH------------HHhhhhhhccCcHHHHHHhhcccCcccchhHH--
Confidence 4788899999999999999765 222222 211 11112222222222222211100 01111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------CCCCCHhHHHHHHHHHHhcCCHHH
Q 004244 363 TSLINSMCKSGNLNRAMEFFDQMHVR------------------------------ELRPNEKTYTTLINGFSQHGFLDE 412 (766)
Q Consensus 363 ~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------~~~~~~~~~~~li~~~~~~g~~~~ 412 (766)
..+....-.|.++.+++++..+... .-.|+..+|..+++.-...|+.+-
T Consensus 144 -n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 144 -NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhh
Confidence 1122222223333333333222211 013455555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004244 413 AYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVE 492 (766)
Q Consensus 413 A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 492 (766)
|..++.+|.+.|++.+..-|-.|+-+ .++...++.++..|.+.|+.|+..|+...+..+...|....+.
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~-------- 291 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE-------- 291 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------
Confidence 55555555555555555544444433 4555555555555555555555555555444444433311111
Q ss_pred CCCCCCHH-----HHHHHHHHHHhcCCHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 493 KGVLPDTI-----TYSSLIHGLCEQRRITE-----ACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQ 562 (766)
Q Consensus 493 ~~~~p~~~-----~~~~li~~~~~~g~~~~-----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (766)
.|. +... .+..+..+.....+++. ....+++..-.|+.-....| +++.-...+|+-++..++-..+..
T Consensus 292 e~s-q~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~n 369 (1088)
T KOG4318|consen 292 EGS-QLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLN 369 (1088)
T ss_pred ccc-chhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcC
Confidence 111 1111 11112111111111110 11111111111222122122 222222335555555555555542
Q ss_pred C--CCCC-CHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHH
Q 004244 563 K--GFLP-DVVTYSVLINGLNKQART--MEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNE 637 (766)
Q Consensus 563 ~--g~~p-~~~~~~~li~~~~~~g~~--~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~ 637 (766)
- ...+ ++..|..++.-|.+.-+. .+-.....+.+... .+.. ..+.+ .-+...-+...
T Consensus 370 pt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se------------~tp~v----sell~~lrkns 431 (1088)
T KOG4318|consen 370 PTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSE------------DTPRV----SELLENLRKNS 431 (1088)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchh------------hhHHH----HHHHHHhCcch
Confidence 1 1111 223333333333221110 00000000110000 0000 00000 11111112222
Q ss_pred HHHHHHHHH----hCCCCC-------CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 004244 638 ADRVFELML----QRNHMP-------NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 638 A~~~~~~~~----~~~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 706 (766)
+.+.+..+. ++.+.| -...-+.++-.++..-+..+++..-++....-+ | ..|..+++-++...+.+
T Consensus 432 ~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle 508 (1088)
T KOG4318|consen 432 FLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLE 508 (1088)
T ss_pred HHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHH
Confidence 222222221 111111 122345666677777777777765555443222 2 56888999999999999
Q ss_pred HHHHHHHHHHHcCCC--ChHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 707 ELSQVIENILRSCRL--SDAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 707 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
.|..+.++....+.. -+...+..+.+.+.+.+...++.++++++.+
T Consensus 509 ~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 509 YALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 999999998765422 2344567888999999999999999999887
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.4e-11 Score=129.89 Aligned_cols=283 Identities=11% Similarity=0.035 Sum_probs=211.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 004244 441 TGGRVEDAVGVLHGMARKGLAPDVVS-YSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYS--SLIHGLCEQRRITE 517 (766)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~ 517 (766)
..|++++|++.+....+... ++.. |-.......+.|+++.|.+.+.++.+.. |+..... .....+...|++++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHH
Confidence 36999999988887666422 2333 3333445589999999999999998753 4443222 34667889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHH
Q 004244 518 ACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVV-------TYSVLINGLNKQARTMEAKK 590 (766)
Q Consensus 518 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-------~~~~li~~~~~~g~~~~A~~ 590 (766)
|...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999886 6677888999999999999999999999999875443221 23333333334444555566
Q ss_pred HHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 004244 591 LLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNV 670 (766)
Q Consensus 591 l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 670 (766)
+++...+. .+.+......+. ..+...|+.++|.+.+++..+. .|+.... ++.+....++.
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A---------------~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~ 310 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMA---------------EHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNP 310 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCCh
Confidence 66655432 223444444444 8899999999999999999884 4555322 34455567999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004244 671 QKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (766)
+++++..++..+. .|+. ..+..++..+...|++++|..+|+++++.. |+...+..++.++.+.|+.++|.+++++
T Consensus 311 ~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 311 EQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999865 4554 667799999999999999999999999986 4455667899999999999999999997
Q ss_pred HHH
Q 004244 750 MAK 752 (766)
Q Consensus 750 m~~ 752 (766)
-..
T Consensus 387 ~l~ 389 (398)
T PRK10747 387 GLM 389 (398)
T ss_pred HHh
Confidence 654
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.9e-11 Score=115.00 Aligned_cols=299 Identities=15% Similarity=0.182 Sum_probs=214.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 004244 443 GRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPD---TITYSSLIHGLCEQRRITEAC 519 (766)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~ 519 (766)
.+.++|.++|-+|.+... .+..+.-+|.+.|.+.|..|.|+++-..+.++.-.+. ......|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 566667777766666422 2444555666667777777777777766665421111 123345566677788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 520 ELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDV----VTYSVLINGLNKQARTMEAKKLLLKL 595 (766)
Q Consensus 520 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~~ 595 (766)
.+|..+.+.+ .--......|+..|-...+|++|++.-+++.+.+-.+.. .-|..+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888888765 444556778889999999999999999988876543332 34666777777788999999999999
Q ss_pred HhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 004244 596 FYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYD 675 (766)
Q Consensus 596 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 675 (766)
.+. .|+.+--+.+++ +.+...|+++.|++.++.+.+.+..--..+...|..+|.+.|+.++...
T Consensus 207 lqa--~~~cvRAsi~lG--------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 207 LQA--DKKCVRASIILG--------------RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred Hhh--Cccceehhhhhh--------------HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 874 566666666665 7889999999999999999986543346677889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHh---cCCChhHHHHHHHHHHH
Q 004244 676 LYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINH---KEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 676 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~ 752 (766)
++.++.+.. +....-..+........-.+.|..++.+-+... |+...+..|++... ..|.+.+-+.+++.|+.
T Consensus 271 fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 271 FLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 999998653 444444445555555555677888877777775 55556667776654 35678888999999999
Q ss_pred CCCCCCCCCCC
Q 004244 753 DGLLPNSGRST 763 (766)
Q Consensus 753 ~~~~~~~~~~~ 763 (766)
..+...+.+.+
T Consensus 347 e~l~~~~~YRC 357 (389)
T COG2956 347 EQLRRKPRYRC 357 (389)
T ss_pred HHHhhcCCcee
Confidence 88887776653
No 49
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=3.8e-10 Score=107.34 Aligned_cols=446 Identities=11% Similarity=0.064 Sum_probs=192.2
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004244 201 KFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDM 280 (766)
Q Consensus 201 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 280 (766)
..|+.+++--...+-.....+--.+..++...|++++|...+.-+.+.. .++...+-.|.-++.-.|.+.+|..+-.+.
T Consensus 39 tGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 39 TGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 5666666554433322222223334455556666666666666665543 344455555555555566666666655544
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH
Q 004244 281 GLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVV 360 (766)
Q Consensus 281 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 360 (766)
.+ +.-.-..|.+.-.+.++-++...+.+.+... ..--.+|.......-.+.+|++++..++..+ |+-.
T Consensus 118 ~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~ 185 (557)
T KOG3785|consen 118 PK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYI 185 (557)
T ss_pred CC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhh
Confidence 22 2222333344444555555555544444331 1111223333333334566666666665532 2222
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 361 TYTS-LINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGH 439 (766)
Q Consensus 361 ~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~ 439 (766)
..|. +.-+|.+..-++-+.++++-..+. ++.+..+.|.......+.=.-..|..-.+++.+++-.. | ..+.-+
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l 259 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYL 259 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHH
Confidence 2222 233455555556666665555544 22234444444444433322233333334444332111 0 011222
Q ss_pred Hhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----H
Q 004244 440 CTG-----GRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHG-----L 509 (766)
Q Consensus 440 ~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-----~ 509 (766)
++. .+-+.|++++-.+.+. .| ..--.|+-.|.++++..+|..+.+++.. ..|-......+..+ .
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhc
Confidence 222 2334555555444432 11 1222344445566666666655554421 12222221111111 1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004244 510 CEQRRITEACELFQEMLSRGMSPDEF-TYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEA 588 (766)
Q Consensus 510 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 588 (766)
.......-|.+.|+..-+.+...|.. --.++...+.-..++++.+.+++....-=...|...+ .+..+.+..|.+.+|
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEA 412 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHH
Confidence 11112333444444433333332221 1223344444445555555555555443222222332 245555556666666
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhcc
Q 004244 589 KKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEA-VYDIIIHGHSKV 667 (766)
Q Consensus 589 ~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~ 667 (766)
.++|-+.....+ .|..+|.++++ .+|.+++.++.|..++-++-. +.+.. ....+..-|.+.
T Consensus 413 Eelf~~is~~~i-kn~~~Y~s~LA--------------rCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 413 EELFIRISGPEI-KNKILYKSMLA--------------RCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHhhhcChhh-hhhHHHHHHHH--------------HHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHH
Confidence 666554432211 33445544443 455556666555554433322 11222 223333445555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHH
Q 004244 668 GNVQKAYDLYKKMVRSGFVPHTVTI 692 (766)
Q Consensus 668 g~~~~A~~~~~~m~~~~~~p~~~~~ 692 (766)
+.+--|-+.|+.+.. ..|+++-|
T Consensus 475 ~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHhhhHHHc--cCCCcccc
Confidence 555555555555442 24554444
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=2.1e-12 Score=133.15 Aligned_cols=286 Identities=16% Similarity=0.105 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004244 445 VEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGV--LPDTITYSSLIHGLCEQRRITEACELF 522 (766)
Q Consensus 445 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~ 522 (766)
..+|...|...... ..-...+...+..+|...+++++|.++|+.+.+... .-+..+|.+.+--+- +.-+--.+-
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHHH
Confidence 34455555553332 111224444455555555555555555555544311 113444444442221 111111122
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004244 523 QEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLP-DVVTYSVLINGLNKQARTMEAKKLLLKLFYDESV 601 (766)
Q Consensus 523 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 601 (766)
+++.+.. +..+.+|.++.+.|.-+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+..+.
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---- 483 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---- 483 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----
Confidence 2223322 444566666666666666666666666666654 23 455666555555666666666666666633
Q ss_pred CcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHH
Q 004244 602 PSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKM 680 (766)
Q Consensus 602 p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 680 (766)
.|...|++.-+ |+ -.|.++++++.|+-.|+++.+ +.| +.+....++..+-+.|+.|+|+++++++
T Consensus 484 ~~~rhYnAwYG-lG-----------~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 484 VDPRHYNAWYG-LG-----------TVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred CCchhhHHHHh-hh-----------hheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 34444444431 11 456666666666666666666 345 4555555666666666666666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC
Q 004244 681 VRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLP 757 (766)
Q Consensus 681 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 757 (766)
.... +.|+..-..-+..+...+++++|...+|++.+.. |.+..++..++..|-+.|+.+.|+.-|--+.+.+.++
T Consensus 550 ~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 550 IHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6332 2223333334555566666666666666666664 5556666666666666666666666666666555443
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.1e-10 Score=109.55 Aligned_cols=366 Identities=13% Similarity=0.056 Sum_probs=231.5
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHH-HH
Q 004244 355 LSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMP-SIV-TY 432 (766)
Q Consensus 355 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~-~~~-~~ 432 (766)
...|...+-.....+-+.|..+.|++.|......- +-.-.+|..|.... -+.+.+. .....+ +. +.. .-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~----~l~~~l-~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILS----ILVVGL-PSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHH----HHHhcC-cccchHHHH
Confidence 34455555555555667788888888887776541 22223333333222 2222222 222111 11 111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHH
Q 004244 433 NALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGV--LPDTITYSSLIHGLC 510 (766)
Q Consensus 433 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~ 510 (766)
-.+..++-...+.+++.+-.......|++-+...-+....+.....++|+|+.+|+++.+..+ .-|..+|+.++ |.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 223445556667788888777787777776666666666667777888888888888877632 12556676666 33
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004244 511 EQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKK 590 (766)
Q Consensus 511 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 590 (766)
+..+-.-+. +-+.....+ +-.+.|...+.+-|+-.++.++|..+|++.++.+ +.....|+.+..-|....+...|++
T Consensus 309 ~~~~skLs~-LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSKLSY-LAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHHHHH-HHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 333222111 111111111 3345567777777888888888888888888763 3345677777788888888888888
Q ss_pred HHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCC
Q 004244 591 LLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGN 669 (766)
Q Consensus 591 l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 669 (766)
-++++++- .+-|-..|-.+. ++|.-.+...-|+-.|++..+ ++| |...|.+|+.+|.+.++
T Consensus 386 sYRrAvdi-~p~DyRAWYGLG---------------QaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 386 SYRRAVDI-NPRDYRAWYGLG---------------QAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred HHHHHHhc-CchhHHHHhhhh---------------HHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhcc
Confidence 88888774 344666777777 788888888888888888887 456 78888888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC--hHHHHHHHHHHHhcCCChhHH
Q 004244 670 VQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRS----CRLS--DAELAKVLVEINHKEGNMDAV 743 (766)
Q Consensus 670 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A 743 (766)
.++|++.|.+....| ..+...+..|++.+-+.++.++|.+++++.++. +... ...+..-|+.-+.+.+++++|
T Consensus 448 ~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 888888888887655 345567777888888888888888888887763 2111 223333366777777777777
Q ss_pred HHHHHHHHHC
Q 004244 744 LNVLTEMAKD 753 (766)
Q Consensus 744 ~~~~~~m~~~ 753 (766)
..+.....+-
T Consensus 527 s~Ya~~~~~~ 536 (559)
T KOG1155|consen 527 SYYATLVLKG 536 (559)
T ss_pred HHHHHHHhcC
Confidence 7655544433
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=4e-14 Score=142.74 Aligned_cols=261 Identities=17% Similarity=0.170 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 434 ALIKGHCTGGRVEDAVGVLHGMARKG-LAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQ 512 (766)
Q Consensus 434 ~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 512 (766)
.+...+.+.|++++|.+++....... .+.+...|..+.......++.+.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34556666777777777775444332 2334455555556666677777777777777765433 44555556655 577
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004244 513 RRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK-GFLPDVVTYSVLINGLNKQARTMEAKKL 591 (766)
Q Consensus 513 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l 591 (766)
+++++|.++++...+. .++...+...+..+.+.|+++++.++++.+... ..+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777766554 345555666777777778888888887776643 2345666777777777788888888888
Q ss_pred HHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 004244 592 LLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNV 670 (766)
Q Consensus 592 ~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 670 (766)
+++.++ ..|+ ......++ ..+...|+.+++.++++...+.. +.|+..+..++.+|...|+.
T Consensus 169 ~~~al~--~~P~~~~~~~~l~---------------~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALA---------------WLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHH---------------HHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHH--cCCCCHHHHHHHH---------------HHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccc
Confidence 888777 3454 33444455 67777788887777777766542 23555667778888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 671 QKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILR 717 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (766)
++|+..+++..+.. +.|+.....++.++...|+.++|..+.+++.+
T Consensus 231 ~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 231 EEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 88888888877542 34556667788888888888888888777654
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.5e-10 Score=117.10 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 004244 218 NVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIIN 297 (766)
Q Consensus 218 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 297 (766)
+..-+..+.+-+..+.++..|.-+-+++...+..|+..- -+..+++-.|++++|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~--~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIY--WLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHH--HHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 455666677766777778888877787776664454443 4567777788888888877665332 347777777788
Q ss_pred HHHHcCChhHHHHHHH
Q 004244 298 GLCKEGRLKETKGILN 313 (766)
Q Consensus 298 ~~~~~g~~~~a~~~~~ 313 (766)
.+.+..++++|..++.
T Consensus 91 ~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLG 106 (611)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888888888876
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=6.7e-11 Score=111.37 Aligned_cols=297 Identities=15% Similarity=0.149 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------hHHHHH
Q 004244 291 SYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPN------VVTYTS 364 (766)
Q Consensus 291 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~~~~ 364 (766)
.|-.=++.+ -..+.++|.++|-+|.+... .+..+..+|.+.|-+.|..|.|+++++.+.++ || ......
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 344444433 35678899999999988432 23445667888899999999999999988875 33 234456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHH
Q 004244 365 LINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSI----VTYNALIKGHC 440 (766)
Q Consensus 365 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~----~~~~~ll~~~~ 440 (766)
|..-|...|-+|.|.++|..+.+.+.. -......|+..|-...++++|++.-+++.+.+-.+.. ..|.-+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 778889999999999999998876422 4567788899999999999999999988887644432 24556666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004244 441 TGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACE 520 (766)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 520 (766)
...+++.|..++.+..+.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 778999999999999887543 5555566778899999999999999999998765556678889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHh
Q 004244 521 LFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLN---KQARTMEAKKLLLKLFY 597 (766)
Q Consensus 521 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~l~~~~~~ 597 (766)
.+..+.+....++. -..+...-....-.+.|..++.+-+.+ .|+...+..+++.-. ..|+..+.+.++++|+.
T Consensus 271 fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 271 FLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 99999887433333 334444334444456666666666555 699999999998764 45667788888888876
Q ss_pred C
Q 004244 598 D 598 (766)
Q Consensus 598 ~ 598 (766)
.
T Consensus 347 e 347 (389)
T COG2956 347 E 347 (389)
T ss_pred H
Confidence 4
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=4.8e-09 Score=110.36 Aligned_cols=492 Identities=14% Similarity=0.104 Sum_probs=273.7
Q ss_pred hcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHH---HHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhH
Q 004244 231 GVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDG---YCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKE 307 (766)
Q Consensus 231 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 307 (766)
+.++.+.+..-+......+.+.+..++..+-.+ |+..|+.+++ .+-.......-|....+.+++...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm-------- 308 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM-------- 308 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH--------
Confidence 445556666666666666655555555444332 3344555555 222222221222222222222111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004244 308 TKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHV 387 (766)
Q Consensus 308 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 387 (766)
-++.++....+.-|...|..+--+....|+++.+.+.|++....- -.....|+.+...|...|.-..|..+++.-..
T Consensus 309 --~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 309 --LLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred --HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 112233333344456666666667777777777777777665432 22455666677777777777777777766554
Q ss_pred CCCCCCHhHHHHHHHH-HH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHH
Q 004244 388 RELRPNEKTYTTLING-FS-QHGFLDEAYRLLNEMTKN--GF--MPSIVTYNALIKGHCTG-----------GRVEDAVG 450 (766)
Q Consensus 388 ~~~~~~~~~~~~li~~-~~-~~g~~~~A~~l~~~m~~~--g~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~ 450 (766)
....|+..+--.++.. |. +.+..++++++-.++... +. ......|..+.-+|... ....++.+
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 4323433333233322 22 345556665555555441 11 11222333333333211 12445666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004244 451 VLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGM 530 (766)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 530 (766)
.+++..+.+.. |+.+.--+.--|...++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+.....-
T Consensus 466 ale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~- 543 (799)
T KOG4162|consen 466 ALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF- 543 (799)
T ss_pred HHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-
Confidence 66666665432 2222222334466667777777777777777555677777777777777777777777777666541
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------CC-------CCCHHHHHHHHHHHHhc
Q 004244 531 SPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK---------------------GF-------LPDVVTYSVLINGLNKQ 582 (766)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------g~-------~p~~~~~~~li~~~~~~ 582 (766)
..|......-+..-..-++.++|+.....+... |. .....++..+..-....
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 222222222222233345555555544444321 00 00111222221111100
Q ss_pred CCHHHHHHHHHHHHhCCC--CCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 004244 583 ARTMEAKKLLLKLFYDES--VPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDI 659 (766)
Q Consensus 583 g~~~~A~~l~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 659 (766)
+ +.+-.-.. +..... .|+...+ ... ..+.-....+.+.++.++|...+.+.... .| ....|..
T Consensus 624 ~--~~~~se~~-Lp~s~~~~~~~~~~~-~~~--------~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~ 689 (799)
T KOG4162|consen 624 L--KSAGSELK-LPSSTVLPGPDSLWY-LLQ--------KLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYL 689 (799)
T ss_pred h--hhcccccc-cCcccccCCCCchHH-HHH--------HHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHH
Confidence 0 00000000 111111 1221111 110 01112226677889999999888888763 35 7788888
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCChHHHHHHHHHHHhc
Q 004244 660 IIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQ--VIENILRSCRLSDAELAKVLVEINHK 736 (766)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~ 736 (766)
.+..+...|++++|.+.|..+.. +.|+. .+..+++..+.+.|+..-|.. ++..+++.+ |.+...|..|+.++-+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKK 766 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 88999999999999999999884 46765 778899999999998877777 999999999 6778999999999999
Q ss_pred CCChhHHHHHHHHHHHCC
Q 004244 737 EGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 737 ~g~~~~A~~~~~~m~~~~ 754 (766)
.|+.++|.+.|.......
T Consensus 767 ~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 767 LGDSKQAAECFQAALQLE 784 (799)
T ss_pred ccchHHHHHHHHHHHhhc
Confidence 999999999998866543
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7.7e-10 Score=112.14 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=67.0
Q ss_pred CCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHH
Q 004244 179 PGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYN 258 (766)
Q Consensus 179 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 258 (766)
.+..-+..+++-+....+ +.-|.-+-+++...+ -|+..--.+..+++-.|++++|..+...-.-. ..|..+..
T Consensus 14 ~s~~~~~~~~r~~l~q~~---y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cry 86 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHR---YKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRY 86 (611)
T ss_pred ccHHHHHHHHHHHHHHHh---hhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHH
Confidence 355566666664444442 367777777776554 44444455888899999999998877665322 24788888
Q ss_pred HHHHHHHHcCChhHHHHHHHH
Q 004244 259 TLIDGYCKLGRIDDAFKLLRD 279 (766)
Q Consensus 259 ~li~~~~~~g~~~~A~~l~~~ 279 (766)
....++.+..++++|..++..
T Consensus 87 L~~~~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 87 LAAKCLVKLKEWDQALLVLGR 107 (611)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 888999999999999999873
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=7.2e-08 Score=99.30 Aligned_cols=525 Identities=12% Similarity=0.121 Sum_probs=288.2
Q ss_pred hHHHHHHHHHHcCCCCcHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHH
Q 004244 183 SYNAILDSVIRSGRNNWVKFAEEVYNEMGK-SRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLI 261 (766)
Q Consensus 183 ~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 261 (766)
.|-..+..+.+.|. +..-...|+.... ..+......|...+.-....|-++.+..++++..+. ++..-+-.|
T Consensus 104 Iwl~Ylq~l~~Q~~---iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGL---ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred HHHHHHHHHHhcch---HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 34444444444442 2445555554433 222333445555555555556666666666666553 223345555
Q ss_pred HHHHHcCChhHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCCCH--HHHHHH
Q 004244 262 DGYCKLGRIDDAFKLLRDMGLKG------IEPNLISYNVIINGLCKEGRLKE---TKGILNEISRKGLVPDE--VTYNTL 330 (766)
Q Consensus 262 ~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p~~--~~~~~l 330 (766)
..+++.+++++|.+.+....... -+.+-..|..+-+...+..+.-. ...+++.+.. .-+|. ..|.+|
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSL 254 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHH
Confidence 55666666666666655553211 11223334444444333322221 2222222222 12332 234555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCCCHhHHHHHHHHHHhcC
Q 004244 331 LNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMH--VRELRPNEKTYTTLINGFSQHG 408 (766)
Q Consensus 331 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~~~~li~~~~~~g 408 (766)
.+-|.+.|.++.|..+|++.... ...+.-|+.+.+.|..-..-.-+..+ + +. +.+-+-+..
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~------------- 317 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDV------------- 317 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhh-------------
Confidence 55555555555555555555443 12333344444444332211111110 0 00 001011111
Q ss_pred CHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 004244 409 FLDEAYRLLNEMTKNG-----------FMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPD------VVSYSTII 471 (766)
Q Consensus 409 ~~~~A~~l~~~m~~~g-----------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li 471 (766)
+++-.+.-|+.+...+ -+.++..|..-+.. ..|+..+-...+.++.+. +.|. ...|..+.
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHH
Confidence 1222233333333221 12344455544433 457788888888888764 2222 24588888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------------
Q 004244 472 SGFSRSQELDKAFDTKREMVEKGVLPD---TITYSSLIHGLCEQRRITEACELFQEMLSRGMSP---------------- 532 (766)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---------------- 532 (766)
+.|-..|+++.|..+|++......+-- ..+|..-...-.+..+++.|+++++......-.|
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 999999999999999999887644321 2455555666667888999999988876432111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH-hHHHH
Q 004244 533 -DEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDV-IYNTL 610 (766)
Q Consensus 533 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~-~~~~l 610 (766)
+...|...++.--..|-++....+++.+++..+. ++...-...-.+-.+.-++++.+++++-+..-.-|+.. .|+.-
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 1223444555555678899999999999876543 22222223334556778899999998877653334432 34444
Q ss_pred hhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHhccCChHHHHHHHHHHHHcCCCCC
Q 004244 611 IENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIII--HGHSKVGNVQKAYDLYKKMVRSGFVPH 688 (766)
Q Consensus 611 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~~~~~~p~ 688 (766)
+. ..+.-| ....++.|..+|++.++ |.+|...-+-.|+ ..--+.|....|+.+++++.. ++++.
T Consensus 554 Lt-----------kfi~ry-gg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a 619 (835)
T KOG2047|consen 554 LT-----------KFIKRY-GGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEA 619 (835)
T ss_pred HH-----------HHHHHh-cCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHH
Confidence 41 112322 34578999999999999 5667433332333 333356889999999999764 34444
Q ss_pred H--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 689 T--VTIIVLVKALHTAGMNEELSQVIENILRSCRLSD-AELAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 689 ~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
. ..|+..+.-....=-......+|+++++.-+..+ .......++.-.+.|..+.|..++..-.
T Consensus 620 ~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 620 QRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 3 5677666554444345566788999988743333 3345677888899999999999886543
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=1.8e-10 Score=112.11 Aligned_cols=287 Identities=14% Similarity=0.080 Sum_probs=165.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 004244 407 HGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDT 486 (766)
Q Consensus 407 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 486 (766)
.|++.+|+++..+-.+.+-. ....|..-..+--..|+.+.+-.++.++.+.-..++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 45555555555554444422 22233333444445555555555555555543333444444445555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 004244 487 KREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDE-------FTYTTLINAYCTEGDIPQALRLHDE 559 (766)
Q Consensus 487 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (766)
.+++.+.+.. ++........+|.+.|++.+...++..+.+.+.-.+. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555554433 3445555555555666666666666665555543332 2455555555555555554455555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHH
Q 004244 560 MIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEAD 639 (766)
Q Consensus 560 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 639 (766)
...+ .+-++..-.+++.-+.+.|+.++|.++..+.++.+..|... .+ -.+.+.++.+.-+
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~~----------------~~~l~~~d~~~l~ 314 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---RL----------------IPRLRPGDPEPLI 314 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---HH----------------HhhcCCCCchHHH
Confidence 5443 33445555566667777777777777777777765555521 11 2344566666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 640 RVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 640 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
+..++-... .+.++..+..|+..|.+.+.|.+|.+.|+..++ ..|+..+|..++.++.+.|+.++|.+..++.+..
T Consensus 315 k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 315 KAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 666665543 222556677777777788888888888777763 4677777777777777888887777777776643
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.2e-11 Score=127.66 Aligned_cols=288 Identities=16% Similarity=0.057 Sum_probs=222.5
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCCHHHHHHH
Q 004244 339 NLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVREL--RPNEKTYTTLINGFSQHGFLDEAYRL 416 (766)
Q Consensus 339 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 416 (766)
+..+|...|+.+.+. +.-...+...+..+|...+++++|.++|+.+.+... --+...|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456888888885554 333446667888999999999999999999887631 12567787777654332 23333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004244 417 LNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVL 496 (766)
Q Consensus 417 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 496 (766)
+.+-.-.--+..+.+|.++.+.|.-+++.+.|++.|++....+.. ...+|+.+..=+....++|+|...|+..+.....
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 333222223557789999999999999999999999999886332 6788998888889999999999999998765322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 497 PDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLI 576 (766)
Q Consensus 497 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li 576 (766)
+...|..|.-.|.+.++++.|.-.|+++.+.+ +-+.+....+...+-+.|+.++|+++++++.... +.|+..--..+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 33456667778999999999999999999876 6677778888889999999999999999999764 34555544556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCC
Q 004244 577 NGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHM 651 (766)
Q Consensus 577 ~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (766)
..+...+++++|+..++++.+ +.|+..+...+++ ..|.+.|+.+.|+.-|.-+.+...+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llg--------------ki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE--LVPQESSVFALLG--------------KIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHH--------------HHHHHHccchHHHHhhHHHhcCCCc
Confidence 777889999999999999988 6777766666664 8899999999999999998885433
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=1e-09 Score=106.96 Aligned_cols=287 Identities=14% Similarity=0.131 Sum_probs=171.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 004244 302 EGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEF 381 (766)
Q Consensus 302 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 381 (766)
.|++..|+++..+-.+.+-.| ...|..-..+.-..|+.+.+-..+.+..+..-.++...+-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 455555555555544443222 2233334444445555555555555555543334444455555555555555555555
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 382 FDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSI-------VTYNALIKGHCTGGRVEDAVGVLHG 454 (766)
Q Consensus 382 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~ 454 (766)
.+++.+.+.. +..........|.+.|++.+...++..+.+.|.-.|. .+|+.++.-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555554322 4445555555666666666666666666555543332 2455555555555555554555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004244 455 MARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDE 534 (766)
Q Consensus 455 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 534 (766)
.... .+.++..-.+++.-+.+.|+.++|.++..+..+++..|... ..-.+.+-++.+.-++..+.-.+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 4443 23355566667777778888888888887777776655411 1223556677776666666666542 4445
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004244 535 FTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYD 598 (766)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 598 (766)
-.+.+|...|.+.+.|.+|...|+...+. .|+..+|..+.+++.+.|+..+|.++.++.+..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67778888888888888888888877764 678888888888888888888888888776543
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1.2e-08 Score=97.39 Aligned_cols=451 Identities=12% Similarity=0.078 Sum_probs=264.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 004244 227 RGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLK 306 (766)
Q Consensus 227 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 306 (766)
.-+....++..|+.+++--...+-.-...+-.=+..++...|++++|...+.-+..+. .|+...+..+.-.+.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3455567777777777665543321111222223456667888888888888776643 455556666666666678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004244 307 ETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMH 386 (766)
Q Consensus 307 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 386 (766)
+|..+-++..+ ++..-..+.+..-+.|+-++-..+.+.+.+ ...--.+|.......-.+.+|++++++..
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777655432 333344455566677777777766665543 22333455556666667888888888887
Q ss_pred HCCCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004244 387 VRELRPNEKTYTTLI-NGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVV 465 (766)
Q Consensus 387 ~~~~~~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 465 (766)
.. .|+-...|.-+ -+|.+..-++-+.++++...+. ++.+....|....-..+.=+-..|+.-...+.+.+-..
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 75 34555555433 4566777788888888777765 23344445544444444333334444444554432211
Q ss_pred HHHHHHHHHHcc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 466 SYSTIISGFSRS-----QELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTL 540 (766)
Q Consensus 466 ~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 540 (766)
-..+.-.++. .+-+.|++++-.+.+. .| ..-..|+--|.+++++.+|..+.+++.- ..|-......+
T Consensus 253 --~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgv 324 (557)
T KOG3785|consen 253 --YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGV 324 (557)
T ss_pred --chhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHH
Confidence 1122233332 3456777777766653 22 3333455567888888888888877632 13333333333
Q ss_pred HHHHH-----hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhh
Q 004244 541 INAYC-----TEGDIPQALRLHDEMIQKGFLPDVV-TYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENC 614 (766)
Q Consensus 541 ~~~~~-----~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~ 614 (766)
..+-. ......-|.+.|+..-+.+..-|.. --.++..++.-..++++.+..+.....--...|...+|..
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~A---- 400 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLA---- 400 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHH----
Confidence 33221 1113455666666555554443332 3345566666667788888877777654344454444432
Q ss_pred chhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004244 615 TNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVY-DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTII 693 (766)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 693 (766)
++++..|++.+|.++|-.+....++ |..+| ..|.++|.+.|+++-|.+++-++- -+.+..+..
T Consensus 401 ------------QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLL 464 (557)
T KOG3785|consen 401 ------------QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLL 464 (557)
T ss_pred ------------HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHH
Confidence 6788888888888888776543333 44455 456677888888888877766553 223333333
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004244 694 -VLVKALHTAGMNEELSQVIENILRSCRLS 722 (766)
Q Consensus 694 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 722 (766)
.++.-|.+.+++=-|.+.|+.+...+|.+
T Consensus 465 qlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 465 QLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 44567888888888888888777776544
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=3.2e-09 Score=109.47 Aligned_cols=438 Identities=14% Similarity=0.144 Sum_probs=207.1
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 004244 301 KEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAME 380 (766)
Q Consensus 301 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 380 (766)
..+++...++..+.+.+. .+-...|.....-.++..|+-++|....+.-.+..+ .+.+.|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 344455555555444442 111122222222234445555555555554444322 144445555544555555555555
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 004244 381 FFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKG- 459 (766)
Q Consensus 381 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~- 459 (766)
.|......+. .|...|.-+.-.-.+.++++-....-.+..+.. +.....|..+..++--.|+...|..+++...+..
T Consensus 97 cy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555554432 244444444444444455444444444444331 1223344444444555555555555555554432
Q ss_pred CCCCHHHHHHHH------HHHHccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004244 460 LAPDVVSYSTII------SGFSRSQELDKAFDTKREMVEKGVLPDTITY-SSLIHGLCEQRRITEACELFQEMLSRGMSP 532 (766)
Q Consensus 460 ~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 532 (766)
-.|+...+.-.. ......|..++|.+.+..-... + .|-..+ ..-...+.+.+++++|..++..++.. .|
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 123333322221 1234455555555554443321 1 122222 22334455666666666666666665 33
Q ss_pred CHHHHH-HHHHHHHhcCChHHHH-HHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 004244 533 DEFTYT-TLINAYCTEGDIPQAL-RLHDEMIQKGFLPDVVTYS-VLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNT 609 (766)
Q Consensus 533 ~~~~~~-~l~~~~~~~g~~~~A~-~~~~~~~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ 609 (766)
|..-|. .+..++.+-.+.-++. .+|....+. .|-...-. .-++.+....-.+..-+++..+++.|+++--....+
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S 328 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRS 328 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHH
Confidence 433333 3333332222222222 444443332 11111000 001111112222233344455555555443333322
Q ss_pred HhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 004244 610 LIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEA--VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVP 687 (766)
Q Consensus 610 ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 687 (766)
+...-.. ...+..++..|...-.........+. ..--+|... ++..++..+-+.|+++.|.++++.+++ -.|
T Consensus 329 Lyk~p~k--~~~le~Lvt~y~~~L~~~~~f~~~D~--~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTP 402 (700)
T KOG1156|consen 329 LYKDPEK--VAFLEKLVTSYQHSLSGTGMFNFLDD--GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTP 402 (700)
T ss_pred HHhchhH--hHHHHHHHHHHHhhcccccCCCcccc--cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCc
Confidence 2210000 00000011111100000000000000 000134444 445677888899999999999999984 467
Q ss_pred CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 688 HT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 688 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
+. +-|..-++.+...|+.++|..+++++.+.+ .+|..+-..-+.-..++.+.++|.++.......|.
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 65 566677888999999999999999999987 44444444677778889999999999999888885
No 63
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4.4e-07 Score=97.95 Aligned_cols=542 Identities=13% Similarity=0.132 Sum_probs=283.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 004244 149 IDLVVKSYSHLNMIDKAVNIVNLAKVH---GFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVL 225 (766)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 225 (766)
+..+..-|.++|.+.+|++.|..+..- -...+...--.+..-+.+.. ++++.+.++.|...++..|..+.-.+
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~ls----ve~s~eclkaml~~NirqNlQi~VQv 684 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLS----VEDSLECLKAMLSANIRQNLQIVVQV 684 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 456678889999999999888754321 00001111112333343333 58999999999999999998888888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhC-----------CCCcCHHHHHHHHHHHHHcCChhHHHHHHHHH------------hh
Q 004244 226 IRGFCGVGDLEMGLRFFSEMEKN-----------NCLANVVTYNTLIDGYCKLGRIDDAFKLLRDM------------GL 282 (766)
Q Consensus 226 i~~~~~~g~~~~A~~~~~~m~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m------------~~ 282 (766)
..-|+..=-.+.-.++|+..... ++..|....-..|.+.|+.|++.+.+++.++- ++
T Consensus 685 atky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLke 764 (1666)
T KOG0985|consen 685 ATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKE 764 (1666)
T ss_pred HHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHh
Confidence 88888877778888888887542 24456666667899999999999988876542 11
Q ss_pred C---------------CCCCCHHHHH------HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH------------HH
Q 004244 283 K---------------GIEPNLISYN------VIINGLCKEGRLKETKGILNEISRKGLVPDEVTY------------NT 329 (766)
Q Consensus 283 ~---------------g~~p~~~~~~------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------------~~ 329 (766)
. |..+|.+.|- ..|..|.+.=+....-.+...+....+. ....- .-
T Consensus 765 AkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~-E~~ik~Li~~v~gq~~~de 843 (1666)
T KOG0985|consen 765 AKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCS-EDFIKNLILSVRGQFPVDE 843 (1666)
T ss_pred ccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCc-HHHHHHHHHHHhccCChHH
Confidence 1 1112222221 1233333332222222222222221111 01111 11
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-HHHHHH---HHH-----HH-HHC-----------
Q 004244 330 LLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGN-LNRAME---FFD-----QM-HVR----------- 388 (766)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~---~~~-----~m-~~~----------- 388 (766)
|..-.-+.+++.--...++..+..|.. |..++|+|...|...++ ++.-++ .|+ +. .++
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 223344555555666667777777755 78888888877766543 221110 011 11 011
Q ss_pred CCC--------CCHhHHHHHHHHHHhcCCHHHH-----------HHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHH
Q 004244 389 ELR--------PNEKTYTTLINGFSQHGFLDEA-----------YRLLNEMTKNGFM--PSIVTYNALIKGHCTGGRVED 447 (766)
Q Consensus 389 ~~~--------~~~~~~~~li~~~~~~g~~~~A-----------~~l~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~ 447 (766)
|.. -....|..+.+-+.+..+.+-- ..+.++....+++ .|+......++++...+-..+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 000 0011122222222333322211 2334444443322 234444445556666666666
Q ss_pred HHHHHHHHHHCC--CCCCHHHHHHHH---------------------------HHHHccCCHHHHHHHHHHHHHCC----
Q 004244 448 AVGVLHGMARKG--LAPDVVSYSTII---------------------------SGFSRSQELDKAFDTKREMVEKG---- 494 (766)
Q Consensus 448 A~~~~~~~~~~~--~~~~~~~~~~li---------------------------~~~~~~g~~~~A~~~~~~m~~~~---- 494 (766)
-+++++++.-.+ +.-+...-|.|+ ......+-+++|+.+|++....+
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~ 1082 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQ 1082 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHH
Confidence 666666554321 000111111111 11222334556666555431100
Q ss_pred -----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004244 495 -----------------VLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLH 557 (766)
Q Consensus 495 -----------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (766)
-.-.+..|+.+..+-.+.|.+.+|++-|-+. .|+..|..+++...+.|.+++-.+++
T Consensus 1083 VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1083 VLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 0113456777777777778877777766442 35667778888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHH
Q 004244 558 DEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNE 637 (766)
Q Consensus 558 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~ 637 (766)
....++.-.|.+.+ .++-+|++.++..+-.+++ ..|+......+. +-|...|.++.
T Consensus 1157 ~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vG---------------drcf~~~~y~a 1212 (1666)
T KOG0985|consen 1157 LMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVG---------------DRCFEEKMYEA 1212 (1666)
T ss_pred HHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHh---------------HHHhhhhhhHH
Confidence 77777655565554 5777788888877766554 345655555555 45555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH----------------------HHcCC--CCCHHHHH
Q 004244 638 ADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKM----------------------VRSGF--VPHTVTII 693 (766)
Q Consensus 638 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m----------------------~~~~~--~p~~~~~~ 693 (766)
|.-+|.... .|..|...+...|.+..|.+.-+++ .-.|+ .....-.-
T Consensus 1213 Akl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1213 AKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELE 1283 (1666)
T ss_pred HHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHH
Confidence 554443322 2333333344444444333332221 11121 22333344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhc
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHK 736 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 736 (766)
.++.-|...|-+++-+.+++..+... ..+.+.+..|+-.|.+
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh
Confidence 55666666666666666666665543 3345555556555554
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.3e-11 Score=113.28 Aligned_cols=235 Identities=14% Similarity=0.050 Sum_probs=197.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 498 DTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLIN 577 (766)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 577 (766)
|-.--+.+..+|.+.|.+.+|.+.++.-++. .|-+.||-.|-..|.+..+.+.|+.++.+-++. ++-|+.....+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3344467888999999999999999998887 667778888999999999999999999999986 4555555566777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHH-hHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004244 578 GLNKQARTMEAKKLLLKLFYDESVPSDV-IYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAV 656 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 656 (766)
.+...++.++|.++++...+. .|..+ ....+. ..|.-.++++-|+..|+++++.|.. ++..
T Consensus 299 i~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia---------------~~yfY~~~PE~AlryYRRiLqmG~~-speL 360 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKL--HPINVEAIACIA---------------VGYFYDNNPEMALRYYRRILQMGAQ-SPEL 360 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhc--CCccceeeeeee---------------eccccCCChHHHHHHHHHHHHhcCC-ChHH
Confidence 888899999999999999874 33332 222222 6788899999999999999999875 8889
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004244 657 YDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT--VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEIN 734 (766)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 734 (766)
|+.+.-+|...+++|-++.-|++++..--.|+. .+|..+.......|++.-|.+.|+-++..+ +.+.+.+++|+-.-
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLA 439 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHH
Confidence 999999999999999999999999865545654 678889888999999999999999999988 67889999999999
Q ss_pred hcCCChhHHHHHHHHHHHCC
Q 004244 735 HKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 735 ~~~g~~~~A~~~~~~m~~~~ 754 (766)
.+.|+.++|..+++......
T Consensus 440 ~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 440 ARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhcCchHHHHHHHHHhhhhC
Confidence 99999999999999876654
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=7e-08 Score=101.84 Aligned_cols=436 Identities=12% Similarity=0.030 Sum_probs=225.8
Q ss_pred CcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHH
Q 004244 251 LANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEV-TYNT 329 (766)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ 329 (766)
.-|...|..|.-++...|+++.+-+.|++....- --....|+.+...|...|.-..|..++++-......|+.. .+..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3455666666666666677777766666654321 2234456666666666666666666666655433223322 2222
Q ss_pred HHHHHH-hcCChHHHHHHHHHHHHC--CC--CCChHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCC
Q 004244 330 LLNGYC-KEGNLHQALVLHAEMVRN--GL--SPNVVTYTSLINSMCKS-----------GNLNRAMEFFDQMHVRELRPN 393 (766)
Q Consensus 330 li~~~~-~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~ 393 (766)
.-..|. +.+.+++++..-.+.... +. ......|-.+.-+|... ....++.+.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 222222 345555555555544441 10 01222333333333211 1123455555555554322 2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004244 394 EKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISG 473 (766)
Q Consensus 394 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 473 (766)
....--+.--|+..++++.|.+..++..+-+-..+...|..+.-.+...+++.+|+.+.+...+.-.. |......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhh
Confidence 22222233334455556666666666665544455555655555555666666666665555443100 11111111122
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChH
Q 004244 474 FSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSR--GMSPDEFTYTTLINAYCTEGDIP 551 (766)
Q Consensus 474 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~ 551 (766)
-..-++.++|+.....+... |...- +....++-....+....+.-. .......++..+.......+...
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 22345555555544444321 00000 001111111112222211110 00111223332222221111100
Q ss_pred HHHHHHHHHHHCCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHH
Q 004244 552 QALRLHDEMIQKGF--LPD------VVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVA 623 (766)
Q Consensus 552 ~A~~~~~~~~~~g~--~p~------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 623 (766)
..... +...-. .|+ ...|....+.+.+.+..++|...+.+.... .......|....
T Consensus 628 ~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G------------ 691 (799)
T KOG4162|consen 628 GSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRG------------ 691 (799)
T ss_pred ccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhh------------
Confidence 00000 111111 122 234556677788889999998888887663 223333444433
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHH
Q 004244 624 ALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYD--LYKKMVRSGFVPHTVTIIVLVKALH 700 (766)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~ 700 (766)
..+...|..++|.+.|..... +.| ++....+++.++.+.|+..-|.. ++..+++.+ +-+...|..++..+.
T Consensus 692 ---~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 692 ---LLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFK 765 (799)
T ss_pred ---HHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 567788999999999998887 456 67788999999999999887777 899998654 345589999999999
Q ss_pred hcCChHHHHHHHHHHHHcCC
Q 004244 701 TAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~~~ 720 (766)
+.|+.++|...|+.+.+...
T Consensus 766 ~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HccchHHHHHHHHHHHhhcc
Confidence 99999999999999998753
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=1.1e-07 Score=98.37 Aligned_cols=458 Identities=13% Similarity=0.131 Sum_probs=230.3
Q ss_pred hcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004244 231 GVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKG 310 (766)
Q Consensus 231 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 310 (766)
..+++...+++.+.+.+. .+-...|.....-.++..|+-++|.+..+.-...++. +.++|.++.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 445556666666665552 2223333333333445556666666666655543332 55666666555555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 004244 311 ILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRE- 389 (766)
Q Consensus 311 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 389 (766)
.|......+. -|...+.-+.-.-.+.|+++..........+.. +.....|..++.++.-.|++..|..+.++..+..
T Consensus 97 cy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666432 134444444444455566666555555555431 2234455666666666666666666666665543
Q ss_pred CCCCHhHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004244 390 LRPNEKTYTTLI------NGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPD 463 (766)
Q Consensus 390 ~~~~~~~~~~li------~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 463 (766)
-.|+...+.... ......|..++|.+.+..-... +......-..-...+.+.+++++|..++..+...+ ||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 134444433222 2334455566666655444332 11111122233445566677777777777776653 34
Q ss_pred HHHHHH-HHHHHHccCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 464 VVSYST-IISGFSRSQELDKAF-DTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLI 541 (766)
Q Consensus 464 ~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 541 (766)
...|.. +..++.+..+.-++. .+|....+.-...... -..=+.......-.+..-+++..+.+.|+++- +..+.
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~ 327 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLR 327 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhH
Confidence 433333 333443333333333 4455444331110000 00001111112223334445555666664432 22333
Q ss_pred HHHHhcCChHHHHHHHHHHHH----CC----------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH
Q 004244 542 NAYCTEGDIPQALRLHDEMIQ----KG----------FLPDVVTYS--VLINGLNKQARTMEAKKLLLKLFYDESVPSDV 605 (766)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~----~g----------~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~ 605 (766)
..|-.-.+.+--.++.-.+.. .| -+|....|+ .++..+-+.|+++.|...++..+. ..|+.+
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHH
Confidence 333221111111111111111 11 145554444 455566778888888888888876 355544
Q ss_pred hHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 004244 606 IYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGF 685 (766)
Q Consensus 606 ~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 685 (766)
-.-.+-+ ..+...|++++|..++++..+.+ .||...-.--+.-..+.++.++|.++.......|.
T Consensus 406 Ely~~Ka--------------RI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 406 ELYLVKA--------------RIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHH--------------HHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 3332222 67788888888888888887753 23544433455556678888888888877776553
Q ss_pred C--CC----HHHHHHH--HHHHHhcCChHHHHHHHHHHH
Q 004244 686 V--PH----TVTIIVL--VKALHTAGMNEELSQVIENIL 716 (766)
Q Consensus 686 ~--p~----~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 716 (766)
. .| ...|..+ +.+|.+.|++.+|.+-+..+-
T Consensus 471 ~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 471 GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 1 11 0223322 456667777777766555543
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=8.2e-10 Score=108.36 Aligned_cols=200 Identities=15% Similarity=0.143 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhh
Q 004244 535 FTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENC 614 (766)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~ 614 (766)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~--- 106 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG--- 106 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH---
Confidence 445555556666666666666666665441 3334555556666666666666666666665532 11222333333
Q ss_pred chhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004244 615 TNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTII 693 (766)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 693 (766)
..+...|++++|.+.++++.+....| ....+..++.++...|++++|.+.+++..+.. +.+...+.
T Consensus 107 ------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 173 (234)
T TIGR02521 107 ------------TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLL 173 (234)
T ss_pred ------------HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHH
Confidence 55666677777777776666532222 34455566677777777777777777776432 22345666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
.++..+...|++++|..+++++++.. +.+...+..++..+...|+.++|..+.+.+...
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 67777777777777777777777663 445555666677777777777777777666543
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=1.4e-09 Score=114.08 Aligned_cols=238 Identities=19% Similarity=0.136 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-C
Q 004244 500 ITYSSLIHGLCEQRRITEACELFQEMLSR-----GM-SPDEF-TYTTLINAYCTEGDIPQALRLHDEMIQK-----GF-L 566 (766)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~ 566 (766)
.+...+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666777777777777777766543 21 22322 2344667788889999999998888743 21 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHH
Q 004244 567 PD-VVTYSVLINGLNKQARTMEAKKLLLKLFYD-----E-SVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEAD 639 (766)
Q Consensus 567 p~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~-~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 639 (766)
|. ..+++.|..+|.+.|++++|...+++.++- + ..|+.... +..+...++..+++++|.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~--------------l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ--------------LSELAAILQSMNEYEEAK 345 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH--------------HHHHHHHHHHhcchhHHH
Confidence 22 346677778889999999988888877642 1 11222222 123347899999999999
Q ss_pred HHHHHHHhC---CCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CC--CCC-HHHHHHHHHHHHhcCCh
Q 004244 640 RVFELMLQR---NHMPN----EAVYDIIIHGHSKVGNVQKAYDLYKKMVRS----GF--VPH-TVTIIVLVKALHTAGMN 705 (766)
Q Consensus 640 ~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~--~p~-~~~~~~l~~~~~~~g~~ 705 (766)
.+++...+. -+.++ ..+++.|...|.+.|++++|.+++++++.. +. .+. ...++.+...|.+.+++
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~ 425 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY 425 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence 999877641 12222 467899999999999999999999998742 12 222 35677889999999999
Q ss_pred HHHHHHHHHHHHc------CCCChHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 706 EELSQVIENILRS------CRLSDAELAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 706 ~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
++|.+.|.+.... +.|....+|..|+..|.+.|++++|.++.+.+.
T Consensus 426 ~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 426 EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9998888875533 334456789999999999999999999988766
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=9.6e-10 Score=121.38 Aligned_cols=216 Identities=12% Similarity=-0.037 Sum_probs=112.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004244 513 RRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLL 592 (766)
Q Consensus 513 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 592 (766)
+++++|...+++..+.+ +.+...+..+...+...|++++|...+++.++.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34566666666666654 4455555566666666666666666666666542 333455555666666666666666666
Q ss_pred HHHHhCCCCCcHHh-HHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCh
Q 004244 593 LKLFYDESVPSDVI-YNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNV 670 (766)
Q Consensus 593 ~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 670 (766)
++.++. .|+... +..+. ..+...|++++|+..++++.+.. .| ++..+..+..++...|+.
T Consensus 396 ~~Al~l--~P~~~~~~~~~~---------------~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 396 NECLKL--DPTRAAAGITKL---------------WITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred HHHHhc--CCCChhhHHHHH---------------HHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCH
Confidence 666653 333221 11112 23444566666666666665432 23 344455566666666777
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004244 671 QKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (766)
++|.+.++++... .|+. .....+...+...| ++|...++++++.. .........+...|.-.|+.+.+..+ ++
T Consensus 458 ~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~-~~ 531 (553)
T PRK12370 458 ELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESE-QRIDNNPGLLPLVLVAHGEAIAEKMW-NK 531 (553)
T ss_pred HHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh-hHhhcCchHHHHHHHHHhhhHHHHHH-HH
Confidence 7776666665422 3333 22333444445545 35666566555431 00011111133344445554544444 55
Q ss_pred HHHCC
Q 004244 750 MAKDG 754 (766)
Q Consensus 750 m~~~~ 754 (766)
+.+.|
T Consensus 532 ~~~~~ 536 (553)
T PRK12370 532 FKNED 536 (553)
T ss_pred hhccc
Confidence 55543
No 70
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=9.7e-07 Score=95.40 Aligned_cols=218 Identities=12% Similarity=0.135 Sum_probs=142.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 004244 151 LVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFC 230 (766)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 230 (766)
.++.+|+..|.+++++-+. .+-|..||. -.+|..+.+.. .+.+.++...|.... |....++.+...+.
T Consensus 486 KVi~cfAE~Gqf~KiilY~---kKvGyTPdy---mflLq~l~r~s----PD~~~qFa~~l~Q~~--~~~~die~I~DlFm 553 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILYA---KKVGYTPDY---MFLLQQLKRSS----PDQALQFAMMLVQDE--EPLADIEQIVDLFM 553 (1666)
T ss_pred HHHHHHHHhcchhHHHHHH---HHcCCCccH---HHHHHHHHccC----hhHHHHHHHHhhccC--CCcccHHHHHHHHH
Confidence 3556666666666665544 345778874 45677777755 488888888887743 33444566667676
Q ss_pred hcCChhhHHHHHHHHHhCCCCcCH------------------------------HHHHHHHHHHHHcCChhHHHHHHHHH
Q 004244 231 GVGDLEMGLRFFSEMEKNNCLANV------------------------------VTYNTLIDGYCKLGRIDDAFKLLRDM 280 (766)
Q Consensus 231 ~~g~~~~A~~~~~~m~~~g~~~~~------------------------------~~~~~li~~~~~~g~~~~A~~l~~~m 280 (766)
.....+.+..++-...+.. .|+. .-+..+.+.|-+.|-+.+|++.+..+
T Consensus 554 e~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl 632 (1666)
T KOG0985|consen 554 ELNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDL 632 (1666)
T ss_pred HHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccH
Confidence 6666666666655554432 2221 12345566677788888888777776
Q ss_pred hhCCCCCCHHHHHHH-----HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 004244 281 GLKGIEPNLISYNVI-----INGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRN-- 353 (766)
Q Consensus 281 ~~~g~~p~~~~~~~l-----i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 353 (766)
.. ++..+ ..+.+ +-.|...-.++++.+.+..|...++..|..+...+..-|+..=-.+.-+++|+....-
T Consensus 633 ~D--IKR~v-Vhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eG 709 (1666)
T KOG0985|consen 633 YD--IKRVV-VHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEG 709 (1666)
T ss_pred HH--HHHHH-HHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchh
Confidence 43 12222 22222 2344555677888888888888888778777777777788777778888888876542
Q ss_pred ---------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 354 ---------GLSPNVVTYTSLINSMCKSGNLNRAMEFFDQ 384 (766)
Q Consensus 354 ---------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 384 (766)
++.-|+.+.-..|.+.|+.|++.+..++-++
T Consensus 710 L~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 710 LYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 2445666677788999999999998888654
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=1.8e-09 Score=105.91 Aligned_cols=201 Identities=12% Similarity=0.059 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004244 499 TITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLING 578 (766)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 578 (766)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555666666666666666666666543 3345556666666667777777777777666542 3344556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004244 579 LNKQARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVY 657 (766)
Q Consensus 579 ~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 657 (766)
+...|++++|.+.+++.......+. ...+..+. ..+...|++++|...+++..+.. +.+...+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 172 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAG---------------LCALKAGDFDKAEKYLTRALQID-PQRPESL 172 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHhC-cCChHHH
Confidence 6777777777777777765322121 22222233 56777788888888888777642 1245667
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 658 DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
..++..+...|++++|.+.++++.+. .+.+...+..++..+...|+.++|..+.+.+...
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77778888888888888888887754 2334456666677777788888888877766544
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.1e-07 Score=95.26 Aligned_cols=453 Identities=13% Similarity=0.142 Sum_probs=228.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH--HHHHHH--
Q 004244 225 LIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNV--IINGLC-- 300 (766)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~--li~~~~-- 300 (766)
=++.+.+.|++++|.+..+.+...+ +.+...+..-+-++.+.+++++|+.+.+.-.. ..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 4556677788888888888887765 44566666666677777888888866554321 111222 234444
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHH
Q 004244 301 KEGRLKETKGILNEISRKGLVPDE-VTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSP-NVVTYTSLINSMCKSGNLNRA 378 (766)
Q Consensus 301 ~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A 378 (766)
+.++.++|+..+. |..++. .+...-...+.+.|++++|..+|+.+.+.+.+. +...-..++..- -...+
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV 161 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH
Confidence 5777888877776 333333 244455566777888888888888877764331 111112222111 11111
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 379 MEFFDQMHVRELRPNEKTYTTLI---NGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGM 455 (766)
Q Consensus 379 ~~~~~~m~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 455 (766)
. +.+. ....| ..+|..+- ..+...|++.+|+++++...+.+.. .++. ++.. -+.+-.+
T Consensus 162 ~-~~q~---v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~~-~d~~-eEeie~e- 222 (652)
T KOG2376|consen 162 Q-LLQS---VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLED-EDTN-EEEIEEE- 222 (652)
T ss_pred H-HHHh---ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhcc-cccc-hhhHHHH-
Confidence 1 1221 11122 23443333 3445677777777777776432100 0000 0000 0000000
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHH--HHHHHH-------
Q 004244 456 ARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTIT----YSSLIHGLCEQRRIT--EACELF------- 522 (766)
Q Consensus 456 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~li~~~~~~g~~~--~A~~~~------- 522 (766)
.+ ..--.|...+...|+.++|..++...+...+. |... -|.|+. .....++- .++..+
T Consensus 223 ------l~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 223 ------LN-PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred ------HH-HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHh
Confidence 00 01112233344455555555555555544322 2211 111111 11111110 111111
Q ss_pred -----HHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Q 004244 523 -----QEMLSRGMSPDEFTY-TTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGL-NKQARTMEAKKLLLKL 595 (766)
Q Consensus 523 -----~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~~ 595 (766)
..+... .-..+.. +.++..| .+..+.+.++...... ..|....=..+..+. ++.....+|.+++...
T Consensus 294 ~~~~l~~Ls~~--qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 294 AEFLLSKLSKK--QKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQF 367 (652)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 111111 0011111 2233333 3444555555444332 234333222222222 2333577788887777
Q ss_pred HhCCCCCcH--HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHh
Q 004244 596 FYDESVPSD--VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFE--------LMLQRNHMPNEAVYDIIIHGHS 665 (766)
Q Consensus 596 ~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~ 665 (766)
... .|.. .+....+ ......|+++.|++++. .+.+.+..|- +...+...+.
T Consensus 368 ~~~--~p~~s~~v~L~~a---------------Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~ 428 (652)
T KOG2376|consen 368 ADG--HPEKSKVVLLLRA---------------QLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYY 428 (652)
T ss_pred hcc--CCchhHHHHHHHH---------------HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHH
Confidence 653 3333 2222222 67788999999999998 5555554444 4455667777
Q ss_pred ccCChHHHHHHHHHHHHc--CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Q 004244 666 KVGNVQKAYDLYKKMVRS--GFVPHT----VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGN 739 (766)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~--~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 739 (766)
+.++.+.|..++.+++.- .-.+.. ..+.-++..-.+.|+.++|...++++++.+ +++..+...++-+|++. +
T Consensus 429 ~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d 506 (652)
T KOG2376|consen 429 KIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-D 506 (652)
T ss_pred hccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-C
Confidence 888777777777776521 011222 334444555567799999999999999987 67788888899888855 5
Q ss_pred hhHHHHHHH
Q 004244 740 MDAVLNVLT 748 (766)
Q Consensus 740 ~~~A~~~~~ 748 (766)
.+.|..+-+
T Consensus 507 ~eka~~l~k 515 (652)
T KOG2376|consen 507 PEKAESLSK 515 (652)
T ss_pred HHHHHHHhh
Confidence 566665543
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=4.5e-07 Score=96.76 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=39.7
Q ss_pred HHhcCC-hHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004244 699 LHTAGM-NEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 699 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (766)
+.+..+ .++|.++++-+.... +....+|..-.++|.+.|++--|++.+.+
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 344443 588999999998887 66788888888999999999888887654
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.8e-07 Score=88.55 Aligned_cols=190 Identities=13% Similarity=0.025 Sum_probs=91.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004244 510 CEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAK 589 (766)
Q Consensus 510 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 589 (766)
...++++.|+.+-++.++.+ +-+...|-.-.+.+...|+.++|.-.|+...... +-+...|..|+..|...|++.||.
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHH
Confidence 34445555555555544432 2233333333344445555555555555554431 234455555555555555555555
Q ss_pred HHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccC
Q 004244 590 KLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPN-EAVYDIIIHGHSKVG 668 (766)
Q Consensus 590 ~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 668 (766)
-+-+...+. +..+..+... +++. -.+....--++|.+++++.+. +.|+ ....+.+...+...|
T Consensus 389 ~~An~~~~~-~~~sA~~LtL-~g~~------------V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTL-FGTL------------VLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHHHHH-hhcchhhhhh-hcce------------eeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhC
Confidence 444443332 1111111111 1000 001111123555566555554 3343 334455555566666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 669 NVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 669 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
..++++.++++.+. ..||....+.|++.+...+.+++|...|..++..+
T Consensus 453 ~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 66666666666552 34666666666666666666666666666666665
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=8.4e-12 Score=87.71 Aligned_cols=47 Identities=55% Similarity=1.110 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 004244 253 NVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGL 299 (766)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 299 (766)
|+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444433
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.7e-07 Score=90.21 Aligned_cols=293 Identities=16% Similarity=0.083 Sum_probs=197.6
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 004244 371 KSGNLNRAMEFFDQMHVR-ELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIV-TYNALIKGHCTGGRVEDA 448 (766)
Q Consensus 371 ~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~A 448 (766)
-.++...|...+-.+... -++-|+.....+.+.+...|+.++|...|++.... .|+.. ......-.+.+.|+.++.
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 344444454444443333 23445666777777777777777777777776654 22221 122222334566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004244 449 VGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSR 528 (766)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 528 (766)
..+...+.... +-....|-.-.......++++.|+.+-++.++.+.. +...+-.-...+.+.|++++|.-.|+..+..
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 77777665542 113333444444555677888888888887765432 4444544456778889999999999988876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCcHHh
Q 004244 529 GMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLI-NGLN-KQARTMEAKKLLLKLFYDESVPSDVI 606 (766)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li-~~~~-~~g~~~~A~~l~~~~~~~~~~p~~~~ 606 (766)
. +.+...|..|+..|...|++.+|..+-+...+. ++.+..+...+. ..+. ...--++|.+++++.+. ..|+-.-
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 3 567889999999999999999998888777764 455666665442 2222 33345788899988876 4666443
Q ss_pred HHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 004244 607 YNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFV 686 (766)
Q Consensus 607 ~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 686 (766)
-...++ ..+...|+.++++.++++.+. ..||....+.|++.+...+.+++|.+.|..++. +.
T Consensus 440 AV~~~A--------------EL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~d 501 (564)
T KOG1174|consen 440 AVNLIA--------------ELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QD 501 (564)
T ss_pred HHHHHH--------------HHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC
Confidence 333332 778889999999999999886 457888889999999999999999999999883 45
Q ss_pred CCH
Q 004244 687 PHT 689 (766)
Q Consensus 687 p~~ 689 (766)
|+.
T Consensus 502 P~~ 504 (564)
T KOG1174|consen 502 PKS 504 (564)
T ss_pred ccc
Confidence 654
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.1e-11 Score=87.12 Aligned_cols=50 Identities=48% Similarity=0.922 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 004244 217 PNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCK 266 (766)
Q Consensus 217 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 266 (766)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888875
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.26 E-value=3.2e-07 Score=99.27 Aligned_cols=453 Identities=13% Similarity=0.055 Sum_probs=252.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCC-CCCCHHHHHH
Q 004244 146 SAVIDLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSR-VSPNVYTYNV 224 (766)
Q Consensus 146 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ 224 (766)
...|..|...|...-+..+|.+.|+.+.+.+ .-+...+....+.+++.. .| +.|..+.-...+.. ...-...|-.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~--~w-e~a~~I~l~~~qka~a~~~k~nW~~ 567 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEES--TW-EEAFEICLRAAQKAPAFACKENWVQ 567 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccc--cH-HHHHHHHHHHhhhchHHHHHhhhhh
Confidence 4567777777777777888888888776543 224556667777777766 55 77777733332211 0111222333
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH--HHHHHHHc
Q 004244 225 LIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNV--IINGLCKE 302 (766)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~--li~~~~~~ 302 (766)
+.-.|.+.++...|+.-|+...... +.|...|..+..+|..+|++..|.++|.+...- .|+. +|.. ..-..|..
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDN 643 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHh
Confidence 4444667788888888888887765 457888999999999999999999999887664 3432 2222 23345678
Q ss_pred CChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-------HHHCCCCCChHHHHHHHHHH
Q 004244 303 GRLKETKGILNEISRK------GLVPDEVTYNTLLNGYCKEGNLHQALVLHAE-------MVRNGLSPNVVTYTSLINSM 369 (766)
Q Consensus 303 g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~~g~~~~~~~~~~li~~~ 369 (766)
|++.+|+..+...... +..--..++..+...+...|-...|...+++ ........+...|..+.+++
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 8888888888777642 1111122333333333333333333333332 22222112222222222111
Q ss_pred Hh---cC-C-H-HHHHHH-HHHHHHCCC--------------------CCCHhHHHHHHHHHHh------c--CCHHHHH
Q 004244 370 CK---SG-N-L-NRAMEF-FDQMHVREL--------------------RPNEKTYTTLINGFSQ------H--GFLDEAY 414 (766)
Q Consensus 370 ~~---~g-~-~-~~A~~~-~~~m~~~~~--------------------~~~~~~~~~li~~~~~------~--g~~~~A~ 414 (766)
.- .. + + ..-..+ +.+....+. ..+..+|..++..|.+ . .+...|.
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 00 00 0 0 000000 111111111 1123344444433332 1 1233566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004244 415 RLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKG 494 (766)
Q Consensus 415 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 494 (766)
..+.+.++.. ..+..+|+.|.-. ...|++.-|..-|-.-.... +....+|..+...+.+..+++-|...|.......
T Consensus 804 ~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 804 RCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred HHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC
Confidence 6676666542 3355666665443 55577777766665554442 2366778888888888999999999999887764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HHH--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH----------H
Q 004244 495 VLPDTITYSSLIHGLCEQRRITEACELFQE--MLS--RGMSPDEFTYTTLINAYCTEGDIPQALRLHDE----------M 560 (766)
Q Consensus 495 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~----------~ 560 (766)
+. |...|-.........|+.-++..+|.. ... .|-.++..-|..........|+.++-+...+. .
T Consensus 881 P~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~y 959 (1238)
T KOG1127|consen 881 PL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYY 959 (1238)
T ss_pred ch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHH
Confidence 33 566666555556677888888888876 222 23234444444444444566665554443333 3
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCcHHhHHHHh
Q 004244 561 IQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYD-ESVPSDVIYNTLI 611 (766)
Q Consensus 561 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~p~~~~~~~ll 611 (766)
.. |.+.+...|.+......+.+.+.+|.++..+.+.- ....|...|+.+.
T Consensus 960 f~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 960 FL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred Hh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 32 45666778888888888888888888887775431 1223444555433
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=5.1e-07 Score=96.30 Aligned_cols=290 Identities=16% Similarity=0.184 Sum_probs=159.8
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHH----
Q 004244 227 RGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNV-IINGLCK---- 301 (766)
Q Consensus 227 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~-li~~~~~---- 301 (766)
..+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+..++ |+...|.. +..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3355667777777777664443 23334455566677777777777777777777664 44444433 3333311
Q ss_pred -cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 004244 302 -EGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNL-HQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAM 379 (766)
Q Consensus 302 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 379 (766)
....+...++++++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.|-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 124556666676665532 3222222221111111122 2334445555566644 34555555555444444444
Q ss_pred HHHHHHHHC----C----------CCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 004244 380 EFFDQMHVR----E----------LRPNEK--TYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPS-IVTYNALIKGHCTG 442 (766)
Q Consensus 380 ~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~~ll~~~~~~ 442 (766)
+++...... + -+|... ++.-+...|...|++++|++++++.+++. |+ +..|..-.+.+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHC
Confidence 444444322 0 123332 33445566667777777777777777763 33 45566666677777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--H----HH--HHHHHHHHhcCC
Q 004244 443 GRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDT--I----TY--SSLIHGLCEQRR 514 (766)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~----~~--~~li~~~~~~g~ 514 (766)
|++.+|...++........ |...-+-.+..+.+.|++++|.+++......+..|-. . .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777765443 5566666666677777777777777666555432211 1 11 334556677777
Q ss_pred HHHHHHHHHHHHH
Q 004244 515 ITEACELFQEMLS 527 (766)
Q Consensus 515 ~~~A~~~~~~m~~ 527 (766)
+..|++.|....+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766665554
No 80
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=5e-09 Score=115.74 Aligned_cols=215 Identities=11% Similarity=-0.008 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004244 478 QELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLH 557 (766)
Q Consensus 478 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (766)
+++++|...+++..+.+.. +...+..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4467777777777766533 56666677777777777777777777777764 445566677777777778888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHh-HHHHhhhhchhhhhhHHHHHhhhhhcCCH
Q 004244 558 DEMIQKGFLPD-VVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVI-YNTLIENCTNIEFQNVAALLKGFCMKGLM 635 (766)
Q Consensus 558 ~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~l~~~~~~~g~~ 635 (766)
++..+. .|+ ...+..++..+...|++++|...+++..... .|+... +..+. ..+...|+.
T Consensus 396 ~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la---------------~~l~~~G~~ 457 (553)
T PRK12370 396 NECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQV---------------MFLSLKGKH 457 (553)
T ss_pred HHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHH---------------HHHHhCCCH
Confidence 777765 333 2222333444556777788888877776542 233332 33333 566677888
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004244 636 NEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS-GFVPHTVTIIVLVKALHTAGMNEELSQVIE 713 (766)
Q Consensus 636 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 713 (766)
++|...++++... .| +....+.+...|+..| ++|...++++.+. ...+....+ +...+.-.|+.+.+..+ +
T Consensus 458 ~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~ 530 (553)
T PRK12370 458 ELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-N 530 (553)
T ss_pred HHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-H
Confidence 8888887776543 23 3344455555666666 4677766665532 112322223 33344456676666666 6
Q ss_pred HHHHcC
Q 004244 714 NILRSC 719 (766)
Q Consensus 714 ~~~~~~ 719 (766)
++.+.+
T Consensus 531 ~~~~~~ 536 (553)
T PRK12370 531 KFKNED 536 (553)
T ss_pred Hhhccc
Confidence 665554
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=1.1e-08 Score=103.36 Aligned_cols=235 Identities=13% Similarity=-0.003 Sum_probs=154.8
Q ss_pred CCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004244 478 QELDKAFDTKREMVEKGV-LP--DTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQAL 554 (766)
Q Consensus 478 g~~~~A~~~~~~m~~~~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (766)
+..+.++..+.+++.... .| ....|..+...+...|+.++|...|++.++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455666666666665321 12 23456677777888888888888888888774 556778888888888888999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCC
Q 004244 555 RLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGL 634 (766)
Q Consensus 555 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~ 634 (766)
..|+..++.. +.+..+|..+...+...|++++|.+.|++.... .|+........ ..+...++
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~---------------~l~~~~~~ 180 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWL---------------YLAESKLD 180 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH---------------HHHHccCC
Confidence 8888888752 334567777788888889999999988888874 45433211111 22345678
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc---CC--CC-CHHHHHHHHHHHHhcCChHHH
Q 004244 635 MNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS---GF--VP-HTVTIIVLVKALHTAGMNEEL 708 (766)
Q Consensus 635 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~--~p-~~~~~~~l~~~~~~~g~~~~A 708 (766)
.++|...|++.... ..|+...+ .......|+..++ +.++.+.+. .. .| ....|..++..+.+.|+.++|
T Consensus 181 ~~~A~~~l~~~~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 181 PKQAKENLKQRYEK-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHHHHHHHHHHhh-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 89999988766543 22332222 2233345665544 344444421 11 12 235788889999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHhc
Q 004244 709 SQVIENILRSCRLSDAELAKVLVEINHK 736 (766)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 736 (766)
+.+|+++++.++++...+-..+++....
T Consensus 256 ~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 256 AALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 9999999998855555555555554443
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.3e-06 Score=89.73 Aligned_cols=459 Identities=15% Similarity=0.149 Sum_probs=248.7
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHH--HH
Q 004244 185 NAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTL--ID 262 (766)
Q Consensus 185 ~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--i~ 262 (766)
..++.-+-+.+...-+++|.+....+...+ +.|...+..-+-++.+.+++++|+.+.+.-.. ..+++.. =.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHH
Confidence 345555555554444699999999998865 66788888888889999999999955443321 1122222 34
Q ss_pred HHH--HcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 004244 263 GYC--KLGRIDDAFKLLRDMGLKGIEPN-LISYNVIINGLCKEGRLKETKGILNEISRKGLVP-DEVTYNTLLNGYCKEG 338 (766)
Q Consensus 263 ~~~--~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g 338 (766)
+|| +.+..++|+..++- +.++ ..+...-...+.+.|++++|+++|+.+.+.+.+- +...-..++.+ +
T Consensus 86 AYc~Yrlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~ 156 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----A 156 (652)
T ss_pred HHHHHHcccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----H
Confidence 454 78999999999983 3333 3366666777889999999999999998875431 11111122211 1
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH-------hHHHHHH
Q 004244 339 NLHQALVLHAEMVRNGLSPNVVTYTS---LINSMCKSGNLNRAMEFFDQMHVRE-------LRPNE-------KTYTTLI 401 (766)
Q Consensus 339 ~~~~A~~~~~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~-------~~~~~li 401 (766)
..-.+. +.+. ....| ..+|.. ....+...|++.+|+++++...+.+ -.-+. ..-..|.
T Consensus 157 a~l~~~-~~q~---v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 157 AALQVQ-LLQS---VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HhhhHH-HHHh---ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 111111 1222 21222 223433 3445667899999999999883321 11111 1112334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004244 402 NGFSQHGFLDEAYRLLNEMTKNGFMPSIVT----YNALIKGHCTGGRVED--AVGVLHGMARKGLAPDVVSYSTIISGFS 475 (766)
Q Consensus 402 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~----~~~ll~~~~~~g~~~~--A~~~~~~~~~~~~~~~~~~~~~li~~~~ 475 (766)
-.+...|+.++|..++....+... +|... -|.++. .....++-+ ++..++.....
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~----------------- 292 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFK----------------- 292 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHH-----------------
Confidence 455667777788877777777653 23321 122221 111111111 11111111100
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHH
Q 004244 476 RSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAY--CTEGDIPQA 553 (766)
Q Consensus 476 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~g~~~~A 553 (766)
..+.+...+..-... ....-+.++..| .+..+.+.++....-. ..|... +..++..+ ++......|
T Consensus 293 ---l~~~~l~~Ls~~qk~----~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka 360 (652)
T KOG2376|consen 293 ---LAEFLLSKLSKKQKQ----AIYRNNALLALF--TNKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKA 360 (652)
T ss_pred ---hHHHHHHHHHHHHHH----HHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhh
Confidence 001111111110000 111111222222 3344455444443321 133333 33333332 222346777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCcHHhHHHHhhhhchhhhhhHHHH
Q 004244 554 LRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLL--------KLFYDESVPSDVIYNTLIENCTNIEFQNVAAL 625 (766)
Q Consensus 554 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~--------~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l 625 (766)
.+++...-+..-.-..+..-..+......|+++.|++++. ...+.+..|-.+.+..
T Consensus 361 ~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv---------------- 424 (652)
T KOG2376|consen 361 IELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIV---------------- 424 (652)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHH----------------
Confidence 7777776654211123455556666788899999999888 4444444454443322
Q ss_pred HhhhhhcCCHHHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004244 626 LKGFCMKGLMNEADRVFELMLQR--NHMPNEA----VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKAL 699 (766)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 699 (766)
..+.+.++-+.|..++.+.+.. .-.+... ++.-++..-.+.|+-++|..+++++.+.. ++|..+...++.+|
T Consensus 425 -~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 425 -ALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAY 502 (652)
T ss_pred -HHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHH
Confidence 5567777777777777766531 0112222 23333444457799999999999999643 57778888888887
Q ss_pred HhcCChHHHHHHHHH
Q 004244 700 HTAGMNEELSQVIEN 714 (766)
Q Consensus 700 ~~~g~~~~A~~~~~~ 714 (766)
+.. +.+.|..+-.+
T Consensus 503 ~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 503 ARL-DPEKAESLSKK 516 (652)
T ss_pred Hhc-CHHHHHHHhhc
Confidence 764 46666665444
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=1.8e-08 Score=105.89 Aligned_cols=198 Identities=21% Similarity=0.158 Sum_probs=126.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-H
Q 004244 400 LINGFSQHGFLDEAYRLLNEMTKN-----GF--MPSIVTYNALIKGHCTGGRVEDAVGVLHGMARK-----GL-APDV-V 465 (766)
Q Consensus 400 li~~~~~~g~~~~A~~l~~~m~~~-----g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~ 465 (766)
+...|...+++++|..+|+++... |- +.-..+++.|...|++.|++++|...++...+. +. .|.+ .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444555556666666666555431 11 111234555555566666666666555554331 11 1122 2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CC
Q 004244 466 SYSTIISGFSRSQELDKAFDTKREMVEK---GVLPD----TITYSSLIHGLCEQRRITEACELFQEMLSR-----G--MS 531 (766)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~ 531 (766)
.++.++..++..+++++|..+++...+. -+.++ ..+++.|...|...|++++|.+++++.+.. | ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3455566677777777777777655432 11112 356888899999999999999999988753 1 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004244 532 PDEFTYTTLINAYCTEGDIPQALRLHDEMIQK----G--FLPDVVTYSVLINGLNKQARTMEAKKLLLKLFY 597 (766)
Q Consensus 532 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 597 (766)
-....++.+...|.+.++.++|.++|.+...- | .+....+|..|...|...|++++|.++.+....
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22446788888999999999999988876532 2 222346889999999999999999999888763
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=3.6e-09 Score=99.82 Aligned_cols=235 Identities=11% Similarity=0.021 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004244 464 VVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINA 543 (766)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 543 (766)
-.--+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-.+|.+..+++.|+.++.+-++. ++.|+.......+.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHH
Confidence 333455666777777777777777766655 344556666667777777777777777776655 23344444455566
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHH
Q 004244 544 YCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVA 623 (766)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 623 (766)
+...++.++|.++++...+. .+.++....++..+|.-.++.+-|++.+++++..|..... .|+.+.
T Consensus 300 ~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe-Lf~Nig------------ 365 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE-LFCNIG------------ 365 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH-HHhhHH------------
Confidence 66667777777777777665 2445556666666666677777777777777776654333 333333
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004244 624 ALLKGFCMKGLMNEADRVFELMLQRNHMP--NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHT 701 (766)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 701 (766)
-+|.-.+.+|-++..|++.......| -..+|..+.......|++.-|...|+-.+..+ ..+.+.++.|.-.-.+
T Consensus 366 ---LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r 441 (478)
T KOG1129|consen 366 ---LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAAR 441 (478)
T ss_pred ---HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhh
Confidence 34555667777777777666543333 24456666666667777777777777666432 2334667766666667
Q ss_pred cCChHHHHHHHHHHHHcC
Q 004244 702 AGMNEELSQVIENILRSC 719 (766)
Q Consensus 702 ~g~~~~A~~~~~~~~~~~ 719 (766)
.|++++|..+++.+....
T Consensus 442 ~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 442 SGDILGARSLLNAAKSVM 459 (478)
T ss_pred cCchHHHHHHHHHhhhhC
Confidence 777777777777766665
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=4.4e-06 Score=87.46 Aligned_cols=171 Identities=13% Similarity=0.089 Sum_probs=88.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-------HCCCC-CCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHH
Q 004244 153 VKSYSHLNMIDKAVNIVNLAK-------VHGFM-PGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNV 224 (766)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~-------~~g~~-~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 224 (766)
-++|+..|++.+|..+.+... +.|.. .+.+-..+++..+-+. +.+|..+|-+-- .-..
T Consensus 497 ercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kk-----fk~ae~ifleqn---------~te~ 562 (1636)
T KOG3616|consen 497 ERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKK-----FKEAEMIFLEQN---------ATEE 562 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhh-----hhHHHHHHHhcc---------cHHH
Confidence 366666777777666554321 11221 2222333444444331 367777764421 1123
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 004244 225 LIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGR 304 (766)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 304 (766)
-|..|....++++|+.+-+. .|.+.-...-.+.+.++...|+-++|-++-+. +..+ .+.|+.|.+.|.
T Consensus 563 aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s--------dgd~-laaiqlyika~~ 630 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKES--------DGDG-LAAIQLYIKAGK 630 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhccc--------cCcc-HHHHHHHHHcCC
Confidence 45666667777777665432 33333333445566666777777777654321 1112 234677888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 305 LKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMV 351 (766)
Q Consensus 305 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 351 (766)
+..|......=.. +..|......+..++.+..-+++|-.+|+++.
T Consensus 631 p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 631 PAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred chHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 8777665432211 22355555555555555555555555555543
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=3.5e-06 Score=88.13 Aligned_cols=266 Identities=16% Similarity=0.178 Sum_probs=168.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 004244 226 IRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRL 305 (766)
Q Consensus 226 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 305 (766)
|.+-.....+.+|+.+++.+.... .-..-|..+.+.|...|+++.|.++|-+.. .++..|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344456678888888888887653 233457777889999999999999987542 366778899999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 306 KETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQM 385 (766)
Q Consensus 306 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 385 (766)
+.|.++-++.. |.+.....|.+-..-+-+.|++.+|.++|-.+- .|+ .-|.+|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 99998877654 344455667666677788899999988875432 233 2467888888888888877664
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------
Q 004244 386 HVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGM---------- 455 (766)
Q Consensus 386 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~---------- 455 (766)
... .-..|...+..-+-..|++.+|..-|-+..+ |.+-+++|-..+-+++|.++-+.-
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~ 944 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVA 944 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHH
Confidence 322 1234556677778888888888877755432 445556666666666666554321
Q ss_pred ----HHCCCCCCHHH------HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 456 ----ARKGLAPDVVS------YSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEM 525 (766)
Q Consensus 456 ----~~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 525 (766)
...|-..-+.. ...-++.-+..+.++-|+++-+-..+.. .|.+. ..+..-+-..|++++|-+.|-+.
T Consensus 945 flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~vh--lk~a~~ledegk~edaskhyvea 1021 (1636)
T KOG3616|consen 945 FLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEA 1021 (1636)
T ss_pred HHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHH
Confidence 11111100111 1122333455555666666555443321 22222 22333456778888888887777
Q ss_pred HHC
Q 004244 526 LSR 528 (766)
Q Consensus 526 ~~~ 528 (766)
++.
T Consensus 1022 ikl 1024 (1636)
T KOG3616|consen 1022 IKL 1024 (1636)
T ss_pred hhc
Confidence 664
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.6e-07 Score=92.13 Aligned_cols=447 Identities=16% Similarity=0.114 Sum_probs=246.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCC
Q 004244 226 IRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPN-LISYNVIINGLCKEGR 304 (766)
Q Consensus 226 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 304 (766)
.++.+..|+++.|+..|-+.+... ++|.+.|..-..+|.+.|++++|++--.+-.+. .|+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456677788888888888887765 457888888888888888888887766655443 455 4567777777777788
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-HHHHHHHHH
Q 004244 305 LKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGN-LNRAMEFFD 383 (766)
Q Consensus 305 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 383 (766)
+++|+.-|.+-.+... -|...++-+..++ ..+.+. +.. --++..|..+..--...+- .+.+....-
T Consensus 86 ~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDP-SNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcCC-chHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 8888888877766431 1344455555544 111111 111 1122223222211111111 011111111
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH-----HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 004244 384 QMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLN-----EMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMAR- 457 (766)
Q Consensus 384 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~-----~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~- 457 (766)
+....+ |. . +..|.....+..+...+. .+...|..+....-+ -+.+..+ ......++.+
T Consensus 153 ~~~~~~--p~--~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~----p~~~~~~---~~~~~~d~~ee 217 (539)
T KOG0548|consen 153 EIIQKN--PT--S----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAE----PCKQEHN---GFPIIEDNTEE 217 (539)
T ss_pred HHhhcC--cH--h----hhcccccHHHHHHHHHHhcCccccccccccccCCCCCC----cccccCC---CCCccchhHHH
Confidence 111111 11 1 011111111111111111 011111110000000 0000000 0000000000
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004244 458 KGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTY 537 (766)
Q Consensus 458 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 537 (766)
.....-..-...+.....+..+++.|++.+....+.. -+..-++....+|...|.+.++........+.|- ....-|
T Consensus 218 ~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~ 294 (539)
T KOG0548|consen 218 RRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADY 294 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHH
Confidence 0000012234556677777888888888888877765 3555566677788888888888887777776652 222223
Q ss_pred HH-------HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 004244 538 TT-------LINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTL 610 (766)
Q Consensus 538 ~~-------l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l 610 (766)
+. +..+|.+.++++.|+..+.+.+..--.|+. +.+....+++.+..+.... +.|+...-
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e--- 360 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEE--- 360 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHH---
Confidence 22 334566677888888888876654223322 2233444555555444433 33333111
Q ss_pred hhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-
Q 004244 611 IENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT- 689 (766)
Q Consensus 611 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~- 689 (766)
...++ ..+.+.|++..|+..|.+++... +.|...|..-.-+|.+.|.+.+|+.-.+..++. .|+.
T Consensus 361 ~r~kG-----------ne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~ 426 (539)
T KOG0548|consen 361 EREKG-----------NEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFI 426 (539)
T ss_pred HHHHH-----------HHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHH
Confidence 11111 67889999999999999999864 227888999999999999999999988888855 4544
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHh
Q 004244 690 VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINH 735 (766)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 735 (766)
..|..-+.++....++++|...|++.++.+ |.+......+.+++.
T Consensus 427 kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 427 KAYLRKGAALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 667777778888899999999999999998 555555444455544
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=1.5e-05 Score=84.68 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH----HH
Q 004244 462 PDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLS-RGMSPDE----FT 536 (766)
Q Consensus 462 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~----~~ 536 (766)
.|+...+.-.+.++...++++|..++-...+ |...+. +|+..++.--.++-+.|-- .+-.|+. ..
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHH
Confidence 3555555566666666666666665544332 122222 2333333333333333321 1112332 24
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 537 YTTLINAYCTEGDIPQALRLHDEMI 561 (766)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~~ 561 (766)
...+...|.++|.+..|-+-|-+.-
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhhh
Confidence 4556667777787777776665543
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.08 E-value=4.1e-06 Score=91.01 Aligned_cols=385 Identities=11% Similarity=0.041 Sum_probs=182.8
Q ss_pred hHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCH--HHHHHH
Q 004244 183 SYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANV--VTYNTL 260 (766)
Q Consensus 183 ~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~l 260 (766)
.|..|...|.... ++ ..|.+.|+...+.. ..|...+....+.|.+..+++.|..+.-...+.. +.-. ..|--+
T Consensus 494 af~~LG~iYrd~~--Dm-~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSD--DM-KRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHHH--HH-HHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhc
Confidence 3444444444333 22 55666666655542 3445555566666666666666666532222211 0011 112222
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcC
Q 004244 261 IDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNT--LLNGYCKEG 338 (766)
Q Consensus 261 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g 338 (766)
.-.|.+.++...|..-|+......+ .|...|..+..+|...|++..|.++|.+... +.|+. +|.. ..-.-|..|
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNG 644 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhh
Confidence 2334455566666666666554432 2555666666666666666666666666555 23332 1211 112245566
Q ss_pred ChHHHHHHHHHHHHC------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHH
Q 004244 339 NLHQALVLHAEMVRN------GLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHV-------RELRPNEKTYTTLINGFS 405 (766)
Q Consensus 339 ~~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~ 405 (766)
++.+|...+..+... +...-..++..+...+...|-..+|.+++++-++ .....+...|-.+.+
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd--- 721 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD--- 721 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH---
Confidence 666666666555432 0001112222222222223333333333333222 111112222221111
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---
Q 004244 406 QHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRV---E---DAVGVLHGMARKGLAPDVVSYSTIISGFSR--- 476 (766)
Q Consensus 406 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 476 (766)
|..+|-... .. .|+......+..-.-+.+.. + -+.+.+-.-.+ ...+..+|..++..|.+
T Consensus 722 -------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 722 -------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred -------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHH
Confidence 111121111 00 11111111111111122211 1 01111111111 11234445445444433
Q ss_pred -----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004244 477 -----SQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIP 551 (766)
Q Consensus 477 -----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (766)
..+...|+..+++.++.. .-+..+|+.|.-. ...|++.-|...|-.-.... +-+..+|..+.-.+.+..+++
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHH
Confidence 123346777777776652 2266677766544 66677777777776655543 455667777777788888899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 552 QALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLK 594 (766)
Q Consensus 552 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 594 (766)
.|...|...... .+.+...|....-.....|+.-++..+|..
T Consensus 868 ~A~~af~~~qSL-dP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 868 HAEPAFSSVQSL-DPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhhHHHHhhhhc-CchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999888888765 244556665555555677888888888876
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=2.2e-06 Score=90.86 Aligned_cols=329 Identities=16% Similarity=0.197 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHH--HHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhC-C--------
Q 004244 216 SPNVYTYNVLIRG--FCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLK-G-------- 284 (766)
Q Consensus 216 ~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-------- 284 (766)
..|..|-..+++. |...|+.+.|.+-.+-+.. ...|..+..+|.+..+.|-|.--+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 4577888888753 6678999999887776653 467889999999888887776665555321 0
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 004244 285 IEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTS 364 (766)
Q Consensus 285 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 364 (766)
-.|+ .+=.-..-.....|.+++|..+|.+-++ |..|-..|-..|.+++|.++-+.=-+.. =..||..
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~ 863 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYN 863 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHH
Confidence 1122 1111122223467889999999988876 4455567778899999998866432221 2345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----------HHCCC---------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004244 365 LINSMCKSGNLNRAMEFFDQM----------HVREL---------RPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGF 425 (766)
Q Consensus 365 li~~~~~~g~~~~A~~~~~~m----------~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 425 (766)
...-+-..++.+.|++.|++. ....+ ..|...|.-...-+-..|+.|.|+.+|.....
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 666666778888888877653 22110 12334444455555667888888888876654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 426 MPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSL 505 (766)
Q Consensus 426 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 505 (766)
|-++++..|-.|+.++|-++-++- -|......+...|-..|++.+|..+|.+... +...
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnA 999 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNA 999 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHH
Confidence 556777888889999998876542 2566667788899999999999998877643 2222
Q ss_pred HHHHHhcC----------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHH
Q 004244 506 IHGLCEQR----------------RITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHD--------EMI 561 (766)
Q Consensus 506 i~~~~~~g----------------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~ 561 (766)
|+. |+.+ +.-.|-++|++. |. -....+..|-+.|.+.+|+++-- +++
T Consensus 1000 IRl-cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 1000 IRL-CKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHH-HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 222 2222 233333444432 11 12234456777787777776532 122
Q ss_pred HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004244 562 QKG--FLPDVVTYSVLINGLNKQARTMEAKKLLLKLF 596 (766)
Q Consensus 562 ~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 596 (766)
... -..|+...+...+.++...++++|..++-...
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 222 23466777777788888888888887765543
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.9e-07 Score=91.91 Aligned_cols=426 Identities=15% Similarity=0.098 Sum_probs=254.3
Q ss_pred HHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCh
Q 004244 262 DGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDE-VTYNTLLNGYCKEGNL 340 (766)
Q Consensus 262 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~ 340 (766)
++.+..|+++.|...|.+...... +|-+.|..-..+|.+.|++++|++=-.+-++ +.|+. -.|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 455677888888888887766543 3777788888888888888888776666555 45664 3677777777788888
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHH
Q 004244 341 HQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHG-FLDEAYRLLNE 419 (766)
Q Consensus 341 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~ 419 (766)
++|+.-|.+-++.. +.|...++.+..++ ..+.+. +.. .-+...|..+..-=...+ ..+.+....-+
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 88888888777653 23566666666665 111111 111 012222222111000000 01112211111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCC-------CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 004244 420 MTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMA-----RKG-------LAPDVVSYSTIISGFSRSQELDKAFDTK 487 (766)
Q Consensus 420 m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-----~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~ 487 (766)
....+ |.. +..|....++..+...+.... ..+ ..|. ......+-..++..+-.+
T Consensus 154 ~~~~~--p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~d~~ee~~-- 219 (539)
T KOG0548|consen 154 IIQKN--PTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC----KQEHNGFPIIEDNTEERR-- 219 (539)
T ss_pred HhhcC--cHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc----cccCCCCCccchhHHHHH--
Confidence 11111 111 112222111222222111110 000 1111 000000000000000000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 004244 488 REMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLP 567 (766)
Q Consensus 488 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 567 (766)
..--..-...+.++..+..+++.|.+-+....+.. .+..-++....+|...|.+.++...-+..++.|...
T Consensus 220 -------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 220 -------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred -------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 00012335567888888999999999999988774 455556777778899998888888877777664311
Q ss_pred --C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHH
Q 004244 568 --D----VVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRV 641 (766)
Q Consensus 568 --~----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 641 (766)
+ ...+..+..+|.+.++++.|+..|.+.+.....|+. ..+....+++.+.
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~------------------------ls~lk~~Ek~~k~ 346 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL------------------------LSKLKEAEKALKE 346 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH------------------------HHHHHHHHHHHHH
Confidence 0 112222344667788999999999997765444432 2233445666666
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 004244 642 FELMLQRNHMPNE-AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 642 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (766)
.+...- +.|.. .---.-+..+.+.|++.+|+..|.++++.. +-|...|..-+.+|.+.|.+..|+.-.++.++.+
T Consensus 347 ~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~- 422 (539)
T KOG0548|consen 347 AERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD- 422 (539)
T ss_pred HHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 555443 23432 112233777889999999999999999764 4455788889999999999999999999999998
Q ss_pred CChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 721 LSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 721 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
|+....|..-+.++....+|++|.+.|++..+.+
T Consensus 423 p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 423 PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6778888888889988999999999999877766
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=2e-07 Score=94.17 Aligned_cols=226 Identities=13% Similarity=0.001 Sum_probs=148.4
Q ss_pred CCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004244 443 GRVEDAVGVLHGMARKGL-AP--DVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEAC 519 (766)
Q Consensus 443 g~~~~A~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 519 (766)
+..+.++.-+.+++.... .| ....|..+...|.+.|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 455666666666665321 11 2355777777888888888888888888876543 6778888888888889999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004244 520 ELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDE 599 (766)
Q Consensus 520 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 599 (766)
..|++.++.. +.+..++..+...+...|++++|.+.++...+. .|+..............++.++|.+.|.+....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 8888888764 445667777888888889999999998888875 343321111122234567888999888776543
Q ss_pred CCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHhccCChHHH
Q 004244 600 SVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQR---N--HMP-NEAVYDIIIHGHSKVGNVQKA 673 (766)
Q Consensus 600 ~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A 673 (766)
..|+...+ .+ .....|+..++ ..++.+.+. . +.| ...+|..++..+.+.|++++|
T Consensus 195 ~~~~~~~~-~~-----------------~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 195 LDKEQWGW-NI-----------------VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred CCccccHH-HH-----------------HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 23332221 11 22234554443 234444321 1 112 346788999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHH
Q 004244 674 YDLYKKMVRSGFVPHTVTII 693 (766)
Q Consensus 674 ~~~~~~m~~~~~~p~~~~~~ 693 (766)
+..|+++++.+ +||.+-+.
T Consensus 256 ~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 256 AALFKLALANN-VYNFVEHR 274 (296)
T ss_pred HHHHHHHHHhC-CchHHHHH
Confidence 99999998653 34654444
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=5.3e-07 Score=81.80 Aligned_cols=199 Identities=12% Similarity=0.017 Sum_probs=134.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004244 361 TYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHC 440 (766)
Q Consensus 361 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~ 440 (766)
+...|.-+|...|+...|.+-+++.++... .+..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 344566667777777777777777776632 256667777777777777777777777777653 334556666677777
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004244 441 TGGRVEDAVGVLHGMARKG-LAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEAC 519 (766)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 519 (766)
..|++++|...|+.....- ...-..+|..+.-+..+.|+.+.|.+.|++..+.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 7777777777777776641 1122356666666777777777777777777766433 3445566677777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004244 520 ELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK 563 (766)
Q Consensus 520 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 563 (766)
..++.....+ .++..+....|..-...|+.+.+-++-..+.+.
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777765 467777767777777777777777766666554
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.6e-06 Score=81.20 Aligned_cols=291 Identities=13% Similarity=0.133 Sum_probs=163.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH-HHHHH
Q 004244 222 YNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVI-INGLC 300 (766)
Q Consensus 222 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l-i~~~~ 300 (766)
+++++..+.+..++++|++++..-.+.. +.+....+.|..+|....++..|...++++... .|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556666677777888888777776663 225666677777777788888888888777653 3444444322 34455
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 004244 301 KEGRLKETKGILNEISRKGLVPDEVTYNTLLNG--YCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRA 378 (766)
Q Consensus 301 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 378 (766)
+.+.+.+|+++...|... |+...-..-+.+ ....+++..+..+.+.....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 677788888877777552 222221111222 234667777777776655332 444555555556677888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------CHH---------------
Q 004244 379 MEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMP-------------SIV--------------- 430 (766)
Q Consensus 379 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~-------------~~~--------------- 430 (766)
.+-|+...+-+---....|+.-+ +..+.|+++.|+++..++.++|++. |+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 88887777654333456666544 3445677788888888877766431 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 431 TYNALIKGHCTGGRVEDAVGVLHGMARK-GLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGL 509 (766)
Q Consensus 431 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 509 (766)
.+|.-...+.+.|+.+.|.+.+.+|.-+ ....|++|...+.-.- ..+++.+..+-+.-+...++- ...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 1222222344556666666666655432 1223444443332211 122333333333334443332 245666666666
Q ss_pred HhcCCHHHHHHHHHH
Q 004244 510 CEQRRITEACELFQE 524 (766)
Q Consensus 510 ~~~g~~~~A~~~~~~ 524 (766)
|+..-++.|-.++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 666666666665544
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=2e-05 Score=75.56 Aligned_cols=207 Identities=13% Similarity=0.047 Sum_probs=122.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004244 437 KGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRIT 516 (766)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 516 (766)
..+...|+...|+.....+++..+ .|...+..-..+|...|++..|+.-++...+..-. +..++-.+-..+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHH
Confidence 334455667777777776666532 36666666667777777777776666655544222 4445555555666667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004244 517 EACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLF 596 (766)
Q Consensus 517 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 596 (766)
.++...++.++. .||....- ..-.++.+..+.++.|. .....++|.++++-.+..+
T Consensus 241 ~sL~~iRECLKl--dpdHK~Cf------~~YKklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 241 NSLKEIRECLKL--DPDHKLCF------PFYKKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred HHHHHHHHHHcc--CcchhhHH------HHHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHH
Confidence 766666666654 44443211 11111222222222222 1245667777777777776
Q ss_pred hCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHH
Q 004244 597 YDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYD 675 (766)
Q Consensus 597 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 675 (766)
+.......+.++..---| .++...|++.+|+....++++ +.| |+.++.--..+|.-...+++|+.
T Consensus 297 k~ep~~~~ir~~~~r~~c------------~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLC------------TCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred hcCCcccceeeeeeheee------------ecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 643322233333322111 566778888888888888887 445 47777777888888888888888
Q ss_pred HHHHHHHc
Q 004244 676 LYKKMVRS 683 (766)
Q Consensus 676 ~~~~m~~~ 683 (766)
-|+++.+.
T Consensus 363 dye~A~e~ 370 (504)
T KOG0624|consen 363 DYEKALEL 370 (504)
T ss_pred HHHHHHhc
Confidence 88888754
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=3.2e-06 Score=88.85 Aligned_cols=204 Identities=9% Similarity=-0.002 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHH
Q 004244 501 TYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGF-LPDV--VTYSVLIN 577 (766)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~--~~~~~li~ 577 (766)
....+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.....- .|+. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 34445556677777777777777777764 44455666777777777788887777777765421 1222 23445667
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCc-HHhH-HHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHH--H-HHHHhCCC-C
Q 004244 578 GLNKQARTMEAKKLLLKLFYDESVPS-DVIY-NTLIENCTNIEFQNVAALLKGFCMKGLMNEADRV--F-ELMLQRNH-M 651 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~-~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--~-~~~~~~~~-~ 651 (766)
.+...|++++|...+++.......+. .... +.. .++..+...|..+.+.+. . ........ .
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 261 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA-------------SLLWRLELAGHVDVGDRWEDLADYAAWHFPDH 261 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH-------------HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcc
Confidence 77778888888888877753211111 1111 110 001233334433332222 1 11111100 0
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 652 PNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFV-------P-HTVTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 652 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
...........++...|+.++|..+++.+...... . ..........++...|+.++|...+..++..
T Consensus 262 ~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 262 GLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 01122234666777889999999999888642211 0 1122223345566888889998888888765
No 97
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=3.7e-07 Score=82.79 Aligned_cols=198 Identities=13% Similarity=0.064 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004244 501 TYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLN 580 (766)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 580 (766)
+...|.-+|...|+...|..-+++.++.+ +.+..++..+...|.+.|+.+.|.+.|+..++.. +-+....|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34445556666666666666666666654 3344566666666666666666666666666541 334445555566666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 004244 581 KQARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYD 658 (766)
Q Consensus 581 ~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 658 (766)
..|++++|...|++.+....-+. ..+|..+. -+..+.|+.+.|.+.|++.++. .| ...+..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G---------------~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l 177 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLG---------------LCALKAGQFDQAEEYLKRALEL--DPQFPPALL 177 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhH---------------HHHhhcCCchhHHHHHHHHHHh--CcCCChHHH
Confidence 66666666666666665422111 12232222 3344566666666666666653 23 344445
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 659 IIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 659 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
.+...+.+.|++-.|..++++....+ .++..+....+..-...|+.+.|..+=.++.+.
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55666666666666666666665544 255555555555556666666555554444443
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=7.4e-06 Score=86.11 Aligned_cols=303 Identities=13% Similarity=0.053 Sum_probs=181.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004244 431 TYNALIKGHCTGGRVEDAVGVLHGMARKGL-APDV-VSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHG 508 (766)
Q Consensus 431 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 508 (766)
.|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+..+. |...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHH
Confidence 344444455555666665555555443311 1121 11222233456678888888888887765322 3334332 212
Q ss_pred HH----hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004244 509 LC----EQRRITEACELFQEMLSRGMSPD-EFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQA 583 (766)
Q Consensus 509 ~~----~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 583 (766)
+. ..+..+.+.+.++.. .+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 22 245555555555541 122333 3455566778899999999999999999873 455677888899999999
Q ss_pred CHHHHHHHHHHHHhCCC-CCcHH--hHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H
Q 004244 584 RTMEAKKLLLKLFYDES-VPSDV--IYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNH-MPNEAVY-D 658 (766)
Q Consensus 584 ~~~~A~~l~~~~~~~~~-~p~~~--~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-~ 658 (766)
++++|...+++.+.... .|+.. .|..+. ..+...|++++|...++++..... .+..... +
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la---------------~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLA---------------LFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 99999999999887422 12221 222333 678899999999999999864322 1122111 1
Q ss_pred --HHHHHHhccCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C-----h
Q 004244 659 --IIIHGHSKVGNVQKAYDLYKKMVRS--GFVPH---TVTIIVLVKALHTAGMNEELSQVIENILRSCRL---S-----D 723 (766)
Q Consensus 659 --~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-----~ 723 (766)
.++.-+...|..+.+... +.+... ...|. .......+.++...|+.++|...++.+...... . .
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 306 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARD 306 (355)
T ss_pred HHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHh
Confidence 333344455543333332 222110 00011 122235677788999999999999998764311 1 2
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 724 AELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 724 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
.......+..+...|++++|.+.+.+....+
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3334455567789999999999998877654
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=1.1e-05 Score=77.45 Aligned_cols=328 Identities=10% Similarity=0.065 Sum_probs=177.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHh
Q 004244 363 TSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYN-ALIKGHCT 441 (766)
Q Consensus 363 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~-~ll~~~~~ 441 (766)
.-+...+...|++..|+.-|...++.+.. +-.++-.-...|...|+...|+.-+....+. +||-..-. .-...+.+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34555566666666676666666654111 1222222334566666666666666666553 45433211 11233556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004244 442 GGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACEL 521 (766)
Q Consensus 442 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 521 (766)
.|.+++|..-|+..++....... ...++.+.-..++- ......+..+...|+...|+..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHHHH
Confidence 67777777777766665322110 00111110000000 1111222334445566666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004244 522 FQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESV 601 (766)
Q Consensus 522 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 601 (766)
...+++.. +.|...|..-..+|...|++..|+.-++...+.. ..+..+...+...+...|+.+.++...++-++ ..
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld 253 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LD 253 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence 66555542 4455555555556666666666655555444431 23344444455555566666666665555554 34
Q ss_pred CcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccCChHHHHHHHH
Q 004244 602 PSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAV---YDIIIHGHSKVGNVQKAYDLYK 678 (766)
Q Consensus 602 p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~ 678 (766)
||...+-.......++ ...+.+ +......++|.++++-.+...+......... +..+-.++...|++.+|+....
T Consensus 254 pdHK~Cf~~YKklkKv-~K~les-~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKV-VKSLES-AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cchhhHHHHHHHHHHH-HHHHHH-HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 5543322211100000 000001 1344567888889988888887543212223 3345566778899999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004244 679 KMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSCRLS 722 (766)
Q Consensus 679 ~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 722 (766)
+.+ .+.|| ..++.--+.+|....+++.|+.-|+++.+.+..+
T Consensus 332 evL--~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 332 EVL--DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHH--hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 998 45677 5677777889999999999999999999987433
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=9.6e-06 Score=96.80 Aligned_cols=376 Identities=13% Similarity=0.045 Sum_probs=229.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 004244 331 LNGYCKEGNLHQALVLHAEMVRNGLSPN-VVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGF 409 (766)
Q Consensus 331 i~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 409 (766)
...+...|++.+|....... +..+. ..............|+++.+..+++.+.......+..........+...|+
T Consensus 348 a~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 34455667776665543322 11100 011112233445568888877777665322111122223344555667899
Q ss_pred HHHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcc
Q 004244 410 LDEAYRLLNEMTKNGF------MPSI--VTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDV----VSYSTIISGFSRS 477 (766)
Q Consensus 410 ~~~A~~l~~~m~~~g~------~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~ 477 (766)
+++|..++......-- .+.. .....+...+...|++++|...++...+.....+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 9999999988755310 1111 11222334556789999999999988763222222 3455666778889
Q ss_pred CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHH
Q 004244 478 QELDKAFDTKREMVEK----GVL-PDTITYSSLIHGLCEQRRITEACELFQEMLSR----GMS--P-DEFTYTTLINAYC 545 (766)
Q Consensus 478 g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~ 545 (766)
|++++|...+++.... |.. ....++..+...+...|++++|...+++.... +.. + ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 9999999999887643 111 11234556677788999999999998887652 211 1 2233455666677
Q ss_pred hcCChHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHHhHHHHhhhhchhhhh
Q 004244 546 TEGDIPQALRLHDEMIQK--GFLP--DVVTYSVLINGLNKQARTMEAKKLLLKLFYDESV-PSDVIYNTLIENCTNIEFQ 620 (766)
Q Consensus 546 ~~g~~~~A~~~~~~~~~~--g~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~ 620 (766)
..|++++|...+.+.... ...+ ....+..+...+...|++++|.+.+.+....... .....+.....
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~-------- 656 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD-------- 656 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH--------
Confidence 889999999999887653 1112 2334444566778899999999999887542111 11111111000
Q ss_pred hHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCCH-HHH
Q 004244 621 NVAALLKGFCMKGLMNEADRVFELMLQRNHMPN---EAVYDIIIHGHSKVGNVQKAYDLYKKMVRS----GFVPHT-VTI 692 (766)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~ 692 (766)
...+..+...|+.+.|...+........... ...+..+..++...|++++|...++++... |..++. .++
T Consensus 657 --~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 657 --KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred --HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 0001344568999999999877654211111 112356777888999999999999998742 333322 456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 693 IVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
..+..++...|+.++|...+.++++..
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 677888999999999999999999875
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=8.9e-06 Score=97.06 Aligned_cols=373 Identities=12% Similarity=0.003 Sum_probs=228.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004244 366 INSMCKSGNLNRAMEFFDQMHVRELRPN-EKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGR 444 (766)
Q Consensus 366 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 444 (766)
...+...|++.+|.......... +. ..............|+++.+..+++.+.......+..........+...|+
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 34456677777666544433111 00 011112223345567888777777665221111122223334445567899
Q ss_pred HHHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhc
Q 004244 445 VEDAVGVLHGMARKGL------APDV--VSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDT----ITYSSLIHGLCEQ 512 (766)
Q Consensus 445 ~~~A~~~~~~~~~~~~------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~ 512 (766)
++++...+......-. .+.. .....+...+...|++++|...+++....-...+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 9999999988755311 1111 12222334567899999999999988763222222 2445566677889
Q ss_pred CCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHH
Q 004244 513 RRITEACELFQEMLSRGM---SPD--EFTYTTLINAYCTEGDIPQALRLHDEMIQK----GFL--P-DVVTYSVLINGLN 580 (766)
Q Consensus 513 g~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~--p-~~~~~~~li~~~~ 580 (766)
|++++|...+++.....- .+. ..++..+...+...|++++|...+++.... +.. + ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 999999999998875311 111 234556677788999999999999887642 211 1 2233445566677
Q ss_pred hcCCHHHHHHHHHHHHhCC--CCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCC--CCCCHH-
Q 004244 581 KQARTMEAKKLLLKLFYDE--SVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRN--HMPNEA- 655 (766)
Q Consensus 581 ~~g~~~~A~~l~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~- 655 (766)
..|++++|...+.+..... ..+.... ..+ ..+...+...|+.++|...++++.... ......
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~-~~~------------~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQL-QCL------------AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHH-HHH------------HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 8899999999998876531 1121111 111 111266778999999999998875421 111111
Q ss_pred -HH--HHHHHHHhccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-ChH
Q 004244 656 -VY--DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT---VTIIVLVKALHTAGMNEELSQVIENILRS----CRL-SDA 724 (766)
Q Consensus 656 -~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~ 724 (766)
.. ...+..+...|+.+.|...+............ ..+..+..++...|+.++|...+++++.. +.. ...
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 10 11224455689999999998776532111111 12456777888999999999999998865 211 234
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 725 ELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
.....++.++.+.|+.++|...+.+..+..
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 566778899999999999999999887655
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=5.5e-06 Score=77.74 Aligned_cols=291 Identities=14% Similarity=0.156 Sum_probs=184.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 004244 257 YNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNT-LLNGYC 335 (766)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~ 335 (766)
+++.+..+.+..+++.|.+++..-.++.. .+......+..+|....++..|-+.++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 55666677788899999999988877642 26777888888888999999999999998773 466555543 245677
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 004244 336 KEGNLHQALVLHAEMVRNGLSPNVVTYTSLINS--MCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEA 413 (766)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 413 (766)
+.+.+.+|.++...|... ++...-..-+.+ ....+++..+..+.++....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 888999999988877643 222221112222 234678888888888776432 455555555566789999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------CH---------------H
Q 004244 414 YRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAP-------------DV---------------V 465 (766)
Q Consensus 414 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~---------------~ 465 (766)
.+-|+...+-+--.....|+..+..| +.|+.+.|++...+++++|++. |+ .
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 99999988754333556777766544 5689999999999988876541 11 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 466 SYSTIISGFSRSQELDKAFDTKREMVEK-GVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAY 544 (766)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 544 (766)
.+|.-...+.+.++++.|.+.+-.|..+ ....|++|...+.- --..+++.+..+-+.-++..+ +....||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 1222222345566666666666665433 12235555443321 112344444555555555443 33445666666667
Q ss_pred HhcCChHHHHHHHHH
Q 004244 545 CTEGDIPQALRLHDE 559 (766)
Q Consensus 545 ~~~g~~~~A~~~~~~ 559 (766)
|+..-++.|-.++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 766666666666544
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2e-07 Score=92.55 Aligned_cols=255 Identities=14% Similarity=0.108 Sum_probs=146.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004244 439 HCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEA 518 (766)
Q Consensus 439 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 518 (766)
+.-.|++..++.-.+ ........+.....-+.++|...|+.+.++. ++... ..|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 2222112223334445566777777665432 22222 245555555444444333455555
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004244 519 CELFQEMLSRGMSP-DEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFY 597 (766)
Q Consensus 519 ~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 597 (766)
+.-+++.......+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555444333222 2222233334556678888888777542 3566666677888888888888888888876
Q ss_pred CCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 004244 598 DESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLY 677 (766)
Q Consensus 598 ~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 677 (766)
...|........ +.+..+...+.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++
T Consensus 160 --~~eD~~l~qLa~------------awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 160 --IDEDSILTQLAE------------AWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp --CSCCHHHHHHHH------------HHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred --cCCcHHHHHHHH------------HHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344544333222 1113333345688899999888765 4567888888888888999999999988
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCC
Q 004244 678 KKMVRSGFVPHTVTIIVLVKALHTAGMN-EELSQVIENILRSCR 720 (766)
Q Consensus 678 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~ 720 (766)
+++.+.. +-++.+...++......|+. +.+.++++++....|
T Consensus 225 ~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 225 EEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 8877443 33446777777777777877 667778888777663
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=2e-07 Score=97.92 Aligned_cols=222 Identities=14% Similarity=0.089 Sum_probs=169.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 496 LPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVL 575 (766)
Q Consensus 496 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 575 (766)
+|-...-..+...+...|-...|..++++.. .|..++.+|+..|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3433444566777788888888888888764 4556777888888888888888888774 7888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CH
Q 004244 576 INGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NE 654 (766)
Q Consensus 576 i~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 654 (766)
.+......-+++|.++.+..... -...++ ......++++++.+.|+.-.+. .| ..
T Consensus 464 GDv~~d~s~yEkawElsn~~sar----A~r~~~------------------~~~~~~~~fs~~~~hle~sl~~--nplq~ 519 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR----AQRSLA------------------LLILSNKDFSEADKHLERSLEI--NPLQL 519 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH----HHHhhc------------------cccccchhHHHHHHHHHHHhhc--Cccch
Confidence 88888888888888888765432 001111 1223468888898888887763 34 67
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 004244 655 AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEI 733 (766)
Q Consensus 655 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 733 (766)
.+|..++.+..+.++++.|.+.|...+. ..||. ..|+.+..++.+.|+..+|...++++++.+ ..+..+|.+....
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlv 596 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLV 596 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhh
Confidence 7888888888889999999999888884 46765 889999999999999999999999999887 6667788888888
Q ss_pred HhcCCChhHHHHHHHHHHHCCC
Q 004244 734 NHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 734 ~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
..+.|.|++|.+.+.++.+...
T Consensus 597 svdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhhcccHHHHHHHHHHHHHhhh
Confidence 8888999999988888766543
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=5.4e-07 Score=92.41 Aligned_cols=247 Identities=15% Similarity=0.109 Sum_probs=146.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004244 475 SRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQAL 554 (766)
Q Consensus 475 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (766)
.+.|++.+|.-.|+..+..++. +...|..|.......++-..|+..+++.++.. +.|......|.-.|...|.-.+|.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 3445555555555555544332 44555555555555555555555555555553 444555555555566666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHHhC-CCCCcHHhHHHHhhhhchhhhhhHHHHH
Q 004244 555 RLHDEMIQKGFLPDVVTYSVLI-------NGLNKQARTMEAKKLLLKLFYD-ESVPSDVIYNTLIENCTNIEFQNVAALL 626 (766)
Q Consensus 555 ~~~~~~~~~g~~p~~~~~~~li-------~~~~~~g~~~~A~~l~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~l~ 626 (766)
+.++.-+.... |-...-..-. ..+.......+..++|-++... +..+|..+...|.
T Consensus 374 ~~L~~Wi~~~p-~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG--------------- 437 (579)
T KOG1125|consen 374 KMLDKWIRNKP-KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG--------------- 437 (579)
T ss_pred HHHHHHHHhCc-cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH---------------
Confidence 66555543210 0000000000 0111112233444555554433 3234444555554
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGM 704 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~ 704 (766)
-.|...|++++|+..|+.++. ++| |...||-|+..++...+.++|+..|++++ .++|.- .+...|+-.|...|.
T Consensus 438 VLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL--qLqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL--QLQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH--hcCCCeeeeehhhhhhhhhhhh
Confidence 557788899999999998887 456 77889999999998889999999999988 457775 345567778888999
Q ss_pred hHHHHHHHHHHHHcCCC---------ChHHHHHHHHHHHhcCCChhHH
Q 004244 705 NEELSQVIENILRSCRL---------SDAELAKVLVEINHKEGNMDAV 743 (766)
Q Consensus 705 ~~~A~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A 743 (766)
+++|.+.|-.++..... .+..+|..|=.++...++.|-+
T Consensus 514 ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 514 YKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 99999988887755211 1235666666666666666633
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=2.5e-07 Score=91.90 Aligned_cols=253 Identities=13% Similarity=0.059 Sum_probs=162.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004244 472 SGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIP 551 (766)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (766)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888886555 222222223445566778889999877654 3333333 666666655555444434555
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhh
Q 004244 552 QALRLHDEMIQKGFLPDV-VTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFC 630 (766)
Q Consensus 552 ~A~~~~~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~ 630 (766)
.++.-+++.......++. .........+...|++++|++++++. .+.......+ ..|.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~V---------------qi~L 142 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAV---------------QILL 142 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHH---------------HHHH
Confidence 555555444433323222 33333345567789999999988643 1222223333 8899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 004244 631 MKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGH----SKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 706 (766)
+.++++.|.+.++.|.+. ..|.... .++.++ .-.+++.+|.-+|+++.+. +.+++.+.+.++.+....|+++
T Consensus 143 ~~~R~dlA~k~l~~~~~~--~eD~~l~-qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~ 218 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQI--DEDSILT-QLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYE 218 (290)
T ss_dssp HTT-HHHHHHHHHHHHCC--SCCHHHH-HHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HH
T ss_pred HcCCHHHHHHHHHHHHhc--CCcHHHH-HHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHH
Confidence 999999999999999874 3454332 233332 2334699999999998754 5678888999999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHCCC
Q 004244 707 ELSQVIENILRSCRLSDAELAKVLVEINHKEGNM-DAVLNVLTEMAKDGL 755 (766)
Q Consensus 707 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~ 755 (766)
+|...+++++..+ +.++.+..+++-+....|+. +.+.+++.++.....
T Consensus 219 eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 219 EAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9999999999888 67788888888888888888 567778888776543
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=4.3e-07 Score=93.17 Aligned_cols=231 Identities=15% Similarity=0.126 Sum_probs=177.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004244 508 GLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTME 587 (766)
Q Consensus 508 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 587 (766)
-+.+.|++.+|.-.|+..++.+ +.+...|..|.......++-..|+..+.+.++.. +-+....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4577899999999999999886 6678899999999999999999999999999862 5567788889999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhc
Q 004244 588 AKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELML-QRNHMPNEAVYDIIIHGHSK 666 (766)
Q Consensus 588 A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~ 666 (766)
|++.+++.+... |.... +..+--+..+... ........+....++|-++. +.+..+|+.+...|+-.|.-
T Consensus 372 Al~~L~~Wi~~~--p~y~~---l~~a~~~~~~~~~----~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 372 ALKMLDKWIRNK--PKYVH---LVSAGENEDFENT----KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HHHHHHHHHHhC--ccchh---ccccCccccccCC----cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 999999997642 21111 0000000000000 01122223445555665555 55545788888999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHH
Q 004244 667 VGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLN 745 (766)
Q Consensus 667 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 745 (766)
.|.+++|++.|+.++. +.|+. ..|+.|+..+....+.++|+..|.++++.. |.-+.+.+.|+-.+...|.++||.+
T Consensus 443 s~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred chHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHH
Confidence 9999999999999995 45665 789999999999999999999999999997 5567777889999999999999999
Q ss_pred HHHHHHH
Q 004244 746 VLTEMAK 752 (766)
Q Consensus 746 ~~~~m~~ 752 (766)
.|-+...
T Consensus 520 hlL~AL~ 526 (579)
T KOG1125|consen 520 HLLEALS 526 (579)
T ss_pred HHHHHHH
Confidence 9876443
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=6.6e-06 Score=92.47 Aligned_cols=233 Identities=12% Similarity=0.120 Sum_probs=176.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004244 463 DVVSYSTIISGFSRSQELDKAFDTKREMVEK-GVLP---DTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYT 538 (766)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 538 (766)
+...|-..|..+...++.++|.++.++.... ++.- -...|.++++.-...|.-+...++|+++.+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 5677888888889999999999999988754 2211 1235777777777778888899999999875 22345688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHhHHHHhhhhch
Q 004244 539 TLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPS--DVIYNTLIENCTN 616 (766)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~--~~~~~~ll~~~~~ 616 (766)
.|...|.+.++.++|.++++.|.++ +......|..+++.+.++.+-+.|.+++.++++. .|. .+-+.+-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~Iskf----- 1606 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKF----- 1606 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHH-----
Confidence 9999999999999999999999987 5567788999999999999999999999999874 444 22222211
Q ss_pred hhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH--HHHHH
Q 004244 617 IEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT--VTIIV 694 (766)
Q Consensus 617 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ 694 (766)
+..-.+.|+.+.+..+|+..+... +--...|+.+++.-.++|+.+.+..+|++++..++.|.. ..|..
T Consensus 1607 ---------AqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1607 ---------AQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred ---------HHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 166778999999999999988753 226778999999999999999999999999988887765 45555
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 004244 695 LVKALHTAGMNEELSQVIENI 715 (766)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~ 715 (766)
.+.---..|+-+.+..+=.++
T Consensus 1677 wLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHHHhcCchhhHHHHHHHH
Confidence 555555566655444433333
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=1.4e-08 Score=63.74 Aligned_cols=31 Identities=68% Similarity=1.292 Sum_probs=12.6
Q ss_pred CCcCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004244 250 CLANVVTYNTLIDGYCKLGRIDDAFKLLRDM 280 (766)
Q Consensus 250 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 280 (766)
+.||++|||+||++||+.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444433
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=2e-08 Score=63.07 Aligned_cols=34 Identities=38% Similarity=0.837 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 004244 213 SRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEME 246 (766)
Q Consensus 213 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 246 (766)
.|+.||.+|||+||++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3789999999999999999999999999999884
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.68 E-value=0.0012 Score=71.95 Aligned_cols=95 Identities=22% Similarity=0.255 Sum_probs=64.6
Q ss_pred hHHHHHhhhhhcCCHH---HHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004244 621 NVAALLKGFCMKGLMN---EADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLV 696 (766)
Q Consensus 621 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 696 (766)
.++.|++.+.+.++.. +|+-+++.-... .| |..+--.+++.|+-.|-...|.++|+.+--+.+.-|...|. +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HH
Confidence 3567778998888865 455555555542 34 55555678899999999999999999886555666654443 23
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 004244 697 KALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
.-+...|++..+...+...++.
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkf 536 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKF 536 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHH
Confidence 3445667777777777766554
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=4e-06 Score=94.17 Aligned_cols=202 Identities=15% Similarity=0.193 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 004244 535 FTYTTLINAYCTEGDIPQALRLHDEMIQK-GFLP---DVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTL 610 (766)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l 610 (766)
..|-..|....+.++.++|+++.++++.. ++.- -...|.++++.....|.-+...++|+++.+. ......|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHH
Confidence 34444444445555555555555555433 1111 1224444444444445444555555555432 1112223333
Q ss_pred hhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--
Q 004244 611 IENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-- 688 (766)
Q Consensus 611 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-- 688 (766)
. ..|.+.+..++|.++++.|.++ ..-....|..++..+.++.+-+.|.++++++++. -|.
T Consensus 1537 ~---------------~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~e 1598 (1710)
T KOG1070|consen 1537 L---------------GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQE 1598 (1710)
T ss_pred H---------------HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhh
Confidence 3 4555555555555555555532 1123444555555555555555555555555432 122
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC
Q 004244 689 -TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLP 757 (766)
Q Consensus 689 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 757 (766)
.....-.+..-++.|+.+++..+|+..+... |.-...|+.+++.-.++|+.+.+.++|++....++.|
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 1233334444455555555555555555543 4445555555555555555555555555555555443
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.66 E-value=0.00084 Score=68.92 Aligned_cols=419 Identities=13% Similarity=0.155 Sum_probs=230.4
Q ss_pred CCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHH
Q 004244 179 PGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYN 258 (766)
Q Consensus 179 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 258 (766)
-|..+|+.|+.-+.... .+++++.++++... ++-....|..-|..-.+..+++....+|.+.... ..+...|.
T Consensus 18 ~di~sw~~lire~qt~~----~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQP----IDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred ccHHHHHHHHHHHccCC----HHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 37778888887665442 48888999888764 4556778888888888889999999999888765 34666777
Q ss_pred HHHHHHHH-cCChhHHH----HHHHHH-hhCCCCC-CHHHHHHHHHH---------HHHcCChhHHHHHHHHHHHCCCCC
Q 004244 259 TLIDGYCK-LGRIDDAF----KLLRDM-GLKGIEP-NLISYNVIING---------LCKEGRLKETKGILNEISRKGLVP 322 (766)
Q Consensus 259 ~li~~~~~-~g~~~~A~----~l~~~m-~~~g~~p-~~~~~~~li~~---------~~~~g~~~~a~~~~~~m~~~g~~p 322 (766)
..++---+ .|+...+. +.|+-. .+.|+.+ +...|+..+.. +..+.+++...++++++....+.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~- 169 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH- 169 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-
Confidence 77654443 23333222 222222 2233322 22335544432 23344566666777776653221
Q ss_pred CHHHHHHHHHHHH-----------------hcCChHHHHHHHHHHHH--CCCCCChHHHHHHHHHHHhcCCHHH--HHHH
Q 004244 323 DEVTYNTLLNGYC-----------------KEGNLHQALVLHAEMVR--NGLSPNVVTYTSLINSMCKSGNLNR--AMEF 381 (766)
Q Consensus 323 ~~~~~~~li~~~~-----------------~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~--A~~~ 381 (766)
+ ...|.+-|+ +...+..|.++++++.. .|+..+..+ .-..|-.++ +.++
T Consensus 170 n---lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~ 239 (656)
T KOG1914|consen 170 N---LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVEL 239 (656)
T ss_pred c---HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHH
Confidence 1 111111111 11223333333333322 122211111 000011111 1112
Q ss_pred HHHHHHC----CCC-CC--------HhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 004244 382 FDQMHVR----ELR-PN--------EKTYTTLINGFSQHG-FLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGR--- 444 (766)
Q Consensus 382 ~~~m~~~----~~~-~~--------~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~--- 444 (766)
+...++. ++. .+ ..+|...+..+.-.- -+-++...+.+.. +.+...|+
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s---------------~l~~~~~d~~~ 304 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS---------------DLLTEKGDVPD 304 (656)
T ss_pred HHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh---------------HHHHHhccccc
Confidence 2111111 000 00 011111111110000 0111111111111 12233333
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004244 445 ----VEDAVGVLHGMARKGLAPDVVSYSTIISGFSRS---QELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITE 517 (766)
Q Consensus 445 ----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 517 (766)
-+++..+++...+.-...+..+|..+.+.--.. +..+.....++++...-..--..+|..+++.-.+..-+..
T Consensus 305 a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 305 AKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHH
Confidence 345555565555432233444454444322111 1355566666666654222223567778888888888999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004244 518 ACELFQEMLSRGMSP-DEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLF 596 (766)
Q Consensus 518 A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 596 (766)
|..+|.++.+.+..+ ++..+.+++.-||. ++.+.|.++|+.-+++ +..+..--...++-+...++-..|..+|++.+
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l 462 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVL 462 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 999999999887666 77788888887774 7888999999988766 44455566678888899999999999999999
Q ss_pred hCCCCCc--HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh
Q 004244 597 YDESVPS--DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ 647 (766)
Q Consensus 597 ~~~~~p~--~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (766)
..+..|+ ...|..++ +--..-|++..+.++-+++..
T Consensus 463 ~s~l~~~ks~~Iw~r~l---------------~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 463 TSVLSADKSKEIWDRML---------------EYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hccCChhhhHHHHHHHH---------------HHHHhcccHHHHHHHHHHHHH
Confidence 8755544 45788877 667778999999988877764
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=4e-06 Score=78.68 Aligned_cols=122 Identities=10% Similarity=0.090 Sum_probs=67.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 004244 582 QARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDII 660 (766)
Q Consensus 582 ~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 660 (766)
.++.+++...+++.++. .+.+...|..+. ..|...|++++|...|++..+.. | +...+..+
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg---------------~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~l 113 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLG---------------EYYLWRNDYDNALLAYRQALQLR--GENAELYAAL 113 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 45555565556555553 223333444443 55666666666666666666532 3 55555555
Q ss_pred HHHH-hccCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004244 661 IHGH-SKVGN--VQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLS 722 (766)
Q Consensus 661 ~~~~-~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 722 (766)
..++ ...|+ .++|.++++++++.. +-+...+..++..+...|++++|+..++++++..++.
T Consensus 114 A~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 114 ATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5543 44454 366666666666432 2233555556666666666666666666666665443
No 115
>PLN02789 farnesyltranstransferase
Probab=98.61 E-value=3.7e-05 Score=77.59 Aligned_cols=219 Identities=9% Similarity=0.038 Sum_probs=111.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HH
Q 004244 511 EQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEG-DIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQART--ME 587 (766)
Q Consensus 511 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~--~~ 587 (766)
..++.++|+.+..++++.. +-+..+|+....++...| ++++++..++++.+.. +.+..+|+.-...+.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 3445555666666555542 223334444444444444 3566666666665542 23333444333333344432 45
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 004244 588 AKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKV 667 (766)
Q Consensus 588 A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 667 (766)
++.+++++++.. .-+...|.... ..+...|+++++++.++++++.+.. |..+|+.....+.+.
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~---------------w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQ---------------WVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHH---------------HHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 566666665531 22334444443 4455556666666666666664322 455555555444433
Q ss_pred ---CC----hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCChHHHHHHHHHHHh
Q 004244 668 ---GN----VQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTA----GMNEELSQVIENILRSCRLSDAELAKVLVEINH 735 (766)
Q Consensus 668 ---g~----~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 735 (766)
|. .++++++..+++.. .|+. ..|+.+...+... ++..+|...+.++...+ +........|++.|+
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred cccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 22 23556666565533 3433 5555555555542 33455666666666554 444555566666666
Q ss_pred cCC------------------ChhHHHHHHHHHH
Q 004244 736 KEG------------------NMDAVLNVLTEMA 751 (766)
Q Consensus 736 ~~g------------------~~~~A~~~~~~m~ 751 (766)
... ..++|.++++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 267 EGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 432 2366777777773
No 116
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.61 E-value=0.0012 Score=67.91 Aligned_cols=187 Identities=12% Similarity=0.163 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004244 515 ITEACELFQEMLSRGMSPDEFTYTTLINAYCT---EGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKL 591 (766)
Q Consensus 515 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 591 (766)
.+++..+++.....-...+..+|..+..---. ..+.+....+++++...-...-..+|..+++.-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 34555555555443222233444433332111 113555556666666442222334666777777777778888888
Q ss_pred HHHHHhCCCCC-cHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 004244 592 LLKLFYDESVP-SDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNV 670 (766)
Q Consensus 592 ~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 670 (766)
|.+..+.+..+ +..++++++ .-|| .++.+-|.++|+-=+.+ ...++..-...++-+...++-
T Consensus 389 F~kaR~~~r~~hhVfVa~A~m---------------Ey~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd 451 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALM---------------EYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDD 451 (656)
T ss_pred HHHHhhccCCcchhhHHHHHH---------------HHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcc
Confidence 88888776666 566666666 4443 57778888888765543 222334445667777788888
Q ss_pred HHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 671 QKAYDLYKKMVRSGFVPHT--VTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
..|..+|++.+..++.||. ..|..++.--..-|+...+.++-++....
T Consensus 452 ~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 452 NNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8888888888877666665 77888888888888888888877776554
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=5.3e-06 Score=81.31 Aligned_cols=185 Identities=14% Similarity=0.042 Sum_probs=122.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHh--
Q 004244 532 PDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDV---VTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVI-- 606 (766)
Q Consensus 532 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~-- 606 (766)
.....+..+...+.+.|++++|...++++.... +.+. ..+..+..++.+.|++++|...++++++. .|+...
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 345566777778888888888888888887652 2222 45667777888888888888888888774 333221
Q ss_pred --HHHHhhhhchhhhhhHHHHHhhhhhc--------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHH
Q 004244 607 --YNTLIENCTNIEFQNVAALLKGFCMK--------GLMNEADRVFELMLQRNHMPN-EAVYDIIIHGHSKVGNVQKAYD 675 (766)
Q Consensus 607 --~~~ll~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 675 (766)
+..+. .++... |+.++|.+.++++.+. .|+ ...+..+..... ...
T Consensus 108 ~a~~~~g---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~--- 163 (235)
T TIGR03302 108 YAYYLRG---------------LSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN--- 163 (235)
T ss_pred HHHHHHH---------------HHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH---
Confidence 22211 344433 6777788888877764 243 222222211100 000
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CChHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 676 LYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCR--LSDAELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 676 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
.. ......++..+...|++++|+..++++++..+ +.....+..++.++.+.|++++|.++++.+...
T Consensus 164 ----~~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 164 ----RL-------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ----HH-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00 01122466778899999999999999998853 234678889999999999999999999988776
Q ss_pred C
Q 004244 754 G 754 (766)
Q Consensus 754 ~ 754 (766)
.
T Consensus 233 ~ 233 (235)
T TIGR03302 233 Y 233 (235)
T ss_pred C
Confidence 4
No 118
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=0.00022 Score=72.09 Aligned_cols=207 Identities=8% Similarity=0.040 Sum_probs=133.8
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--
Q 004244 474 FSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQR-RITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDI-- 550 (766)
Q Consensus 474 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-- 550 (766)
+...+..++|+....+++..... +..+|+.....+...| ++++++..++++.+.+ +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 34456667777777777765432 4445655555566666 5678888888877764 44555666555555556653
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhh
Q 004244 551 PQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFC 630 (766)
Q Consensus 551 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~ 630 (766)
+++..+++.+++.. +-+..+|+.....+.+.|+++++++.++++++.+. -+...|+... ..+.
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~---------------~vl~ 187 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRY---------------FVIT 187 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHH---------------HHHH
Confidence 56777887877652 45677787777777788888888888888887532 2333444433 1121
Q ss_pred hc---C----CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004244 631 MK---G----LMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKV----GNVQKAYDLYKKMVRSGFVPHTVTIIVLVKA 698 (766)
Q Consensus 631 ~~---g----~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 698 (766)
+. | ..++++....+++.. .| |...|+.+...+... ++..+|.+.+.+..+.+ ..+......|++.
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~ 264 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDL 264 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHH
Confidence 21 2 235677777777774 35 778888888888773 44567989988877532 3344667778888
Q ss_pred HHhc
Q 004244 699 LHTA 702 (766)
Q Consensus 699 ~~~~ 702 (766)
++..
T Consensus 265 ~~~~ 268 (320)
T PLN02789 265 LCEG 268 (320)
T ss_pred HHhh
Confidence 8753
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=1.1e-05 Score=85.23 Aligned_cols=211 Identities=17% Similarity=0.149 Sum_probs=90.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004244 434 ALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQR 513 (766)
Q Consensus 434 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 513 (766)
.+...+.+.|-...|..++++ ...|..+|.+|+..|+..+|..+..+..++ +||+..|..+.+.....-
T Consensus 403 ~laell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 334444445555555555442 233444555555555555555554444442 344444444444444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004244 514 RITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLL 593 (766)
Q Consensus 514 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 593 (766)
-+++|.++.+..... .-..+.....+.++++++.+.++.-.+.. +.-..+|-.+.-+..+.++++.|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 444444444433211 11111111122444555555554444331 2233444444444444455555555554
Q ss_pred HHHhCCCCCcH-HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 004244 594 KLFYDESVPSD-VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQK 672 (766)
Q Consensus 594 ~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 672 (766)
..+. ..||. ..||.+- .+|.+.|+..+|...+++..+.+. .+...|...+....+.|.+++
T Consensus 544 rcvt--L~Pd~~eaWnNls---------------~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 544 RCVT--LEPDNAEAWNNLS---------------TAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHhh--cCCCchhhhhhhh---------------HHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHH
Confidence 4443 23332 2334433 444455555555555555444331 133333333444444555555
Q ss_pred HHHHHHHHH
Q 004244 673 AYDLYKKMV 681 (766)
Q Consensus 673 A~~~~~~m~ 681 (766)
|++.+.++.
T Consensus 606 a~~A~~rll 614 (777)
T KOG1128|consen 606 AIKAYHRLL 614 (777)
T ss_pred HHHHHHHHH
Confidence 555554443
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=5.6e-06 Score=73.37 Aligned_cols=104 Identities=11% Similarity=0.085 Sum_probs=84.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
..+...|++++|...|+.+... .| +...|..++.++.+.|++++|+..|+++.+.. +.+...+..++.++...|+.
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 6678899999999999999874 34 78888999999999999999999999998643 34557888888899999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004244 706 EELSQVIENILRSCRLSDAELAKVLVEIN 734 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 734 (766)
++|+..++++++.. |.+...+.....+.
T Consensus 109 ~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 109 GLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 99999999999987 56666665555443
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=3.4e-05 Score=85.84 Aligned_cols=135 Identities=12% Similarity=0.139 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHH
Q 004244 565 FLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFEL 644 (766)
Q Consensus 565 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (766)
+..+...+..|.....+.|++++|..+++...+ ..||......... ..+.+.+++++|+..+++
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a--------------~~L~~~~~~eeA~~~~~~ 145 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILML--------------RGVKRQQGIEAGRAEIEL 145 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHH--------------HHHHHhccHHHHHHHHHH
Confidence 455677777777777788888888888888776 5676655544432 667778888888888888
Q ss_pred HHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 645 MLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 645 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
..... | +......+..++.+.|++++|.++|+++... .|+ ..++..++..+...|+.++|...|+++++..
T Consensus 146 ~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 146 YFSGG--SSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HhhcC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 87743 4 5666677777778888888888888888762 344 4677777888888888888888888887764
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=4.4e-05 Score=71.25 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=106.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchh
Q 004244 538 TTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNI 617 (766)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~ 617 (766)
..+-..+.-.|+-+.+..+....... .+.|......++....+.|++.+|...+.+.... -++|...|+.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lg------ 141 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLG------ 141 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHH------
Confidence 44555666667777666666664432 2445555556777777777777777777777653 455666666666
Q ss_pred hhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004244 618 EFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLV 696 (766)
Q Consensus 618 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 696 (766)
-+|.+.|+.++|..-|.+..+. .| ++..++.+...+.-.|+.+.|..++.+....+ .-|..+-..+.
T Consensus 142 ---------aaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLA 209 (257)
T COG5010 142 ---------AALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLA 209 (257)
T ss_pred ---------HHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHH
Confidence 6777777777777777777763 34 56667777777777778888877777776543 23445555666
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 004244 697 KALHTAGMNEELSQVIENILR 717 (766)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~ 717 (766)
......|++++|..+..+-+.
T Consensus 210 l~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHhhcCChHHHHhhcccccc
Confidence 677777777777777655443
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=3.7e-06 Score=74.51 Aligned_cols=111 Identities=11% Similarity=-0.057 Sum_probs=93.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 639 DRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 639 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
..++++.++ ..|+. +..++..+.+.|++++|.+.|++++... +.+...|..++.++...|++++|...++++++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345666666 33543 5567888999999999999999998543 345588889999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 719 CRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 719 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
+ |.+...+..++.++...|+.++|.+.+++..+...
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8 67888999999999999999999999999887654
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.44 E-value=4.2e-05 Score=71.38 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=127.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC
Q 004244 573 SVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP 652 (766)
Q Consensus 573 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 652 (766)
..+...+...|+-+.+..+..+.... ...|........ ....+.|++.+|+..+++..... ++
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~g---------------k~~~~~g~~~~A~~~~rkA~~l~-p~ 132 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQG---------------KNQIRNGNFGEAVSVLRKAARLA-PT 132 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHH---------------HHHHHhcchHHHHHHHHHHhccC-CC
Confidence 55677778889888888888776542 222333333344 77889999999999999999842 34
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVE 732 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 732 (766)
|..+|+.+.-+|.+.|+.++|..-|.+..+.. .-++...+.++-.+.-.|+.+.|..++....... +.+..+-..|+.
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl 210 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLAL 210 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHH
Confidence 89999999999999999999999999998642 2344778889999999999999999999999876 667778888999
Q ss_pred HHhcCCChhHHHHHHH
Q 004244 733 INHKEGNMDAVLNVLT 748 (766)
Q Consensus 733 ~~~~~g~~~~A~~~~~ 748 (766)
.....|++++|.++..
T Consensus 211 ~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 211 VVGLQGDFREAEDIAV 226 (257)
T ss_pred HHhhcCChHHHHhhcc
Confidence 9999999999988754
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=3e-05 Score=86.35 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=108.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGM 704 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~ 704 (766)
......|++++|..+++.+.+. .| +......++..+.+.+++++|+..+++.+.. .|+. .....++.++.+.|+
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcc
Confidence 7888999999999999999984 56 5677788899999999999999999999954 5665 667788899999999
Q ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 705 NEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 705 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
+++|..+|++++..+ +.+...+..++..+.+.|+.++|...|++..+.
T Consensus 170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999965 677888999999999999999999999987654
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=3.3e-05 Score=75.66 Aligned_cols=194 Identities=15% Similarity=0.098 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---
Q 004244 497 PDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDE---FTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVV--- 570 (766)
Q Consensus 497 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--- 570 (766)
.....+..+...+...|++++|...++++.... +.+. ..+..+..++.+.|++++|...++++.+.. +.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 356678888889999999999999999998763 2222 466788899999999999999999999762 11221
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCC
Q 004244 571 TYSVLINGLNKQ-ARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRN 649 (766)
Q Consensus 571 ~~~~li~~~~~~-g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (766)
++..+..++.+. +....-..-+++. ...+..++ ..+-......++......+...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A--------~~~~~~~~---------------~~~p~~~~~~~a~~~~~~~~~~- 164 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREA--------FEAFQELI---------------RRYPNSEYAPDAKKRMDYLRNR- 164 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHH--------HHHHHHHH---------------HHCCCChhHHHHHHHHHHHHHH-
Confidence 333333333222 0000000001111 11222222 3333333333333333332210
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 650 HMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGF-VP-HTVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 650 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
-......+...+.+.|++++|+..++++++... .| ....+..++.++.+.|+.++|..+++.+....
T Consensus 165 ---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 165 ---LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred ---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 011223567789999999999999999986421 12 24678899999999999999999988887654
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.0067 Score=66.44 Aligned_cols=223 Identities=12% Similarity=0.124 Sum_probs=144.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH--HcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 004244 158 HLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVI--RSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDL 235 (766)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 235 (766)
..+++.+|+.-...+.+. .|+. .|..++.++. |.|+. ++|..+++.....+.. |..|...+-.+|...++.
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~---~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKG---DEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCc---hhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 346788888888876653 2433 3444555544 55643 8899888887766544 888999999999999999
Q ss_pred hhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-C---------h
Q 004244 236 EMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEG-R---------L 305 (766)
Q Consensus 236 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~---------~ 305 (766)
++|..++++..+. .|+......+..+|.+.+++.+-.+.-=+|-+. .+-+...+=++++.+...- . .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999999886 467777777888888888776544443333322 1223333334444443321 1 2
Q ss_pred hHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004244 306 KETKGILNEISRKG-LVPDEVTYNTLLNGYCKEGNLHQALVLHA-EMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFD 383 (766)
Q Consensus 306 ~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 383 (766)
.-|.+.++.+.+.+ .--+..-...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23556666666543 22222223333445567888999998884 33333333355555667788888899999999888
Q ss_pred HHHHCCC
Q 004244 384 QMHVREL 390 (766)
Q Consensus 384 ~m~~~~~ 390 (766)
++...|.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 8888753
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.39 E-value=4e-05 Score=71.97 Aligned_cols=121 Identities=9% Similarity=0.066 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH-HhcCC--hHH
Q 004244 632 KGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVP-HTVTIIVLVKAL-HTAGM--NEE 707 (766)
Q Consensus 632 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~ 707 (766)
.++.++++..+++.++.. +.|...|..++..|...|++++|+..++++.+. .| +...+..++.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 455566666666666532 125666666666666777777777777766643 33 335555555553 45555 366
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 004244 708 LSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 708 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 756 (766)
|...++++++.+ |.+..++..++..+.+.|++++|...|+++.+....
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 777777777666 455666666666666777777777777666665544
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00014 Score=67.25 Aligned_cols=191 Identities=18% Similarity=0.149 Sum_probs=138.8
Q ss_pred HhcCCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004244 510 CEQRRITEACELFQEMLSR---G-MSPDEF-TYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQAR 584 (766)
Q Consensus 510 ~~~g~~~~A~~~~~~m~~~---~-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 584 (766)
+...+.++..+++.++... | ..++.. .|..+.-+....|+.+.|...++.+.+. ++-+...-..-.-.+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhc
Confidence 4457889999999988753 3 444543 4566666777889999999999998876 43333333222333556899
Q ss_pred HHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004244 585 TMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGH 664 (766)
Q Consensus 585 ~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 664 (766)
+++|.++++..++.. +.|.+++..-+ ...-..|+--+|++.+....+. +.-|...|.-+...|
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKl---------------Ailka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKL---------------AILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIY 164 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHH---------------HHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 999999999998864 44555555444 4556678888898888888775 445899999999999
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCC
Q 004244 665 SKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAG---MNEELSQVIENILRSCR 720 (766)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 720 (766)
...|++++|.-.+++++- ..|.. ..+..+...++-.| +.+-|.++|+++++..+
T Consensus 165 ~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999883 35554 44557777776554 56778999999998873
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.30 E-value=0.00038 Score=78.42 Aligned_cols=236 Identities=12% Similarity=0.125 Sum_probs=138.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 393 NEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSI-VTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTII 471 (766)
Q Consensus 393 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 471 (766)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4666777777777777788887777766654 2332 2233333345555554444333 233
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004244 472 SGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIP 551 (766)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (766)
+......++.-...+...|.+.+ -+...+..+..+|-+.|+.++|..+|+++++.. +-|..+.|.+.-.|+.. +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 33334444433444444444432 234466677777777788888888888877776 55677777777777777 777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhh
Q 004244 552 QALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCM 631 (766)
Q Consensus 552 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~ 631 (766)
+|.+++.+.+.. +...+++.++.+++.++... .|+.+.+
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~------------------------ 205 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDF------------------------ 205 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchH------------------------
Confidence 777777776543 45566777777777777663 3333222
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 004244 632 KGLMNEADRVFELMLQR-NHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALH 700 (766)
Q Consensus 632 ~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 700 (766)
-..+.+++... |..--..++..+-..|-+.++|++++++++.+++. .|+ ......++..|.
T Consensus 206 ------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 206 ------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred ------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 12222222221 11123445555666677778888888888888854 343 345555665554
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=1.4e-05 Score=70.52 Aligned_cols=111 Identities=11% Similarity=-0.048 Sum_probs=77.1
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 641 VFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 641 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
.++++.+. .| +......++..+.+.|++++|.+.++++...+ +.+...+..++..+...|++++|..+++++++.+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444442 34 44555666777777888888888887777543 3345667777777777888888888888877776
Q ss_pred CCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 720 RLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 720 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
+.+...+..++.++...|++++|.+.+++..+.+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 55566677777888888888888888877776653
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00071 Score=63.29 Aligned_cols=255 Identities=15% Similarity=0.108 Sum_probs=145.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004244 437 KGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRIT 516 (766)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 516 (766)
+-+.-.|++..++..-....... -+...-.-+..+|...|++..... ++.. |-.|.......+.......++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhH
Confidence 34445577777766554443321 233444445566666666544332 2222 22344444544444444445544
Q ss_pred HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 517 EACE-LFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKL 595 (766)
Q Consensus 517 ~A~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 595 (766)
.-.. +.+.+.......+......-...|++.|++++|++...... ..+....+ +..+.+..+.+-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4443 33444444333333333344456788888888888776622 12333332 44456777888888888888
Q ss_pred HhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 004244 596 FYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYD 675 (766)
Q Consensus 596 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 675 (766)
..- .+..+.+-|.. +.+......+.+.+|.-+|++|.++ .+|+..+.+..+.++...|++++|..
T Consensus 164 q~i---ded~tLtQLA~-----------awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQ-----------AWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred Hcc---chHHHHHHHHH-----------HHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH
Confidence 652 23334333331 1113344556688888888888765 56788888888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcC
Q 004244 676 LYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELS-QVIENILRSC 719 (766)
Q Consensus 676 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 719 (766)
++++++.+. ..++.+...++-.-...|...++. +.+.+.....
T Consensus 229 lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 229 LLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 888888653 455667766666666666664443 3444444444
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.0002 Score=72.83 Aligned_cols=185 Identities=17% Similarity=0.128 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 496 LPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVL 575 (766)
Q Consensus 496 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 575 (766)
.|+...+...+.+.........+..++.+-.+. .-...-|. ..-.+...|++++|+..++.++.. .+.|+..+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHH
Confidence 345555555565544443333333333332221 11122232 233345667778888888777765 34455555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004244 576 INGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEA 655 (766)
Q Consensus 576 i~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 655 (766)
.+.+.+.++..+|.+.+++++. ..|+........+ .+|.+.|++.+|+.+++...... +.|+.
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a--------------~all~~g~~~eai~~L~~~~~~~-p~dp~ 409 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLA--------------QALLKGGKPQEAIRILNRYLFND-PEDPN 409 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHH--------------HHHHhcCChHHHHHHHHHHhhcC-CCCch
Confidence 6777777888888888877776 3455322222222 67777778888777777776542 23677
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 656 VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
.|..|..+|...|+..+|.....+ .+.-.|++++|+..+..+.+..
T Consensus 410 ~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 410 GWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 777777777777777776655444 3345677777777777777663
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00092 Score=62.06 Aligned_cols=189 Identities=15% Similarity=0.170 Sum_probs=146.0
Q ss_pred HccCCHHHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004244 475 SRSQELDKAFDTKREMVEK---G-VLPDTIT-YSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGD 549 (766)
Q Consensus 475 ~~~g~~~~A~~~~~~m~~~---~-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 549 (766)
+...+.++..+++.++... | ..++..+ |..++-+....|+.+.|...++.+...- +.+..+-..-...+-..|.
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 4567789999999988753 4 4455544 4455667778899999999999998873 3333332222333456799
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhh
Q 004244 550 IPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGF 629 (766)
Q Consensus 550 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~ 629 (766)
+++|.++++.+++.+ +.|.+++-.=+...-..|+.-+|++-+.+.++. +..|...|.-+- ..|
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLa---------------eiY 164 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELA---------------EIY 164 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHH---------------HHH
Confidence 999999999999874 667788887777777889999999999999886 777888998888 899
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccC---ChHHHHHHHHHHHHc
Q 004244 630 CMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVG---NVQKAYDLYKKMVRS 683 (766)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 683 (766)
...|++++|.-.++++.- +.| ++..+..+.+.+.-.| +.+-|.++|.+.++.
T Consensus 165 ~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999997 446 6666777777776555 467789999998854
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0017 Score=60.90 Aligned_cols=251 Identities=14% Similarity=0.154 Sum_probs=144.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 004244 153 VKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGV 232 (766)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 232 (766)
|+-|.-.|.+..++..-....... -++..---+-++|...|.. ..+..++.... .|.......+...+...
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~------~~~~~eI~~~~-~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQY------QIVISEIKEGK-ATPLQAVRLLAEYLELE 85 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccc------ccccccccccc-CChHHHHHHHHHHhhCc
Confidence 566666777777776555433221 1222222233444444432 23333444332 44444444444444444
Q ss_pred CChhhHH-HHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 004244 233 GDLEMGL-RFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGI 311 (766)
Q Consensus 233 g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 311 (766)
++.+.-. ++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|.+.
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544433 344445444333343333444456778888888888877621 233333334556677888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004244 312 LNEISRKGLVPDEVTYNTLLNGYCK----EGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHV 387 (766)
Q Consensus 312 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 387 (766)
+++|.+. -+..|.+.|..++.+ .+.+.+|.-+|++|.+. .+|+..+.+....++...|++++|..++++...
T Consensus 160 lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 160 LKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888873 245566656555543 45677888888888764 567888888888888888888888888888887
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 004244 388 RELRPNEKTYTTLINGFSQHGFL-DEAYRLLNEMTKN 423 (766)
Q Consensus 388 ~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~ 423 (766)
+... +..+...++-.-...|.. +...+.+.++...
T Consensus 236 kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 236 KDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred ccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 7443 455554444444444443 4445555665554
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=0.00049 Score=70.09 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=92.5
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChH
Q 004244 473 GFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPD-EFTYTTLINAYCTEGDIP 551 (766)
Q Consensus 473 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~ 551 (766)
.+...|++++|+..++.++..- +-|+..+....+.+...++.++|.+.++.+... .|+ ....-.+.++|.+.|+.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3455667777777777766542 225555566666777777777777777777765 333 445556677777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhh
Q 004244 552 QALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCM 631 (766)
Q Consensus 552 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~ 631 (766)
+|+++++..... .+.|...|..|..+|...|+..+|..... ..|..
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A---------------------------------E~~~~ 437 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA---------------------------------EGYAL 437 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH---------------------------------HHHHh
Confidence 777777777654 46677777777777777777777665443 34555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 004244 632 KGLMNEADRVFELMLQR 648 (766)
Q Consensus 632 ~g~~~~A~~~~~~~~~~ 648 (766)
.|+++.|+..+....+.
T Consensus 438 ~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 67777777777776654
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.20 E-value=0.00063 Score=76.70 Aligned_cols=239 Identities=11% Similarity=0.093 Sum_probs=142.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 004244 216 SPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANV-VTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNV 294 (766)
Q Consensus 216 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 294 (766)
+.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~-------------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL-------------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh--------------
Confidence 345777888888888999999999999877665 3443 3333333466666766555544 22
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004244 295 IINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGN 374 (766)
Q Consensus 295 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 374 (766)
+..+....++.-...+...|...+ -+...+..+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|... +
T Consensus 90 -l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 -IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 222223333333333333444422 244577778888889999999999999998876 44788888888888888 8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 375 LNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHG 454 (766)
Q Consensus 375 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 454 (766)
+++|.+++.+.... +...+++.++.+++.++..... .+...+ ..+.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f----------------~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFF----------------LRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHH----------------HHHHHH
Confidence 99998888887654 5555566667777766666421 111111 112222
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004244 455 MARK-GLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLC 510 (766)
Q Consensus 455 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 510 (766)
+... |..--+.++-.+...|...+++++++.+++.+.+.... |......++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 2211 11222334444455555666666666666666655433 4444445555443
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=6.5e-05 Score=77.27 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=103.9
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004244 624 ALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAG 703 (766)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 703 (766)
.|+..+...++++.|+.+++++.+.. |+. ...++..+...++-.+|++++++.++.. +-+...+..-+..|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 44577788899999999999999854 554 3457888888899999999999998542 345566667788899999
Q ss_pred ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 704 MNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
+.+.|..+.+++.+.. |.+...|..|+.+|.+.|++++|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999997 7889999999999999999999999988776
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00019 Score=63.92 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=91.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCh
Q 004244 631 MKGLMNEADRVFELMLQRNHMPN---EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT--VTIIVLVKALHTAGMN 705 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~ 705 (766)
..++...+...++.+.+... .+ ....-.+...+...|++++|.+.|+........|+. .....++..+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 48899999999999987532 13 334455778889999999999999999976522322 3455688999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 004244 706 EELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEM 750 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 750 (766)
++|...++..... +.....+..++++|.+.|++++|...|++.
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999999774332 345667888999999999999999999864
No 140
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.04 E-value=0.0001 Score=72.63 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=94.9
Q ss_pred hhhhhcCCHHHHHHHHHHHH----hCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHH----HcCCC-CCHHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELML----QRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMV----RSGFV-PHTVTIIVLV 696 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~l~ 696 (766)
..|.-.|+++.|+..-+.=+ +.|-.. ....+..+..++.-.|+++.|.+.|+... +.|-+ ....++..|.
T Consensus 203 NTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLg 282 (639)
T KOG1130|consen 203 NTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLG 282 (639)
T ss_pred ceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhh
Confidence 67778899999988765322 444322 34567889999999999999999998854 22311 2235566788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc-----CCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 697 KALHTAGMNEELSQVIENILRS-----CRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
.+|.-..++++|+.++.+-+.. +.......++.|+.++-..|..++|+.+.+.-+..
T Consensus 283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999986644 33446778889999999999999999887665443
No 141
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00042 Score=68.68 Aligned_cols=280 Identities=12% Similarity=0.000 Sum_probs=151.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004244 437 KGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRIT 516 (766)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 516 (766)
..+.+..++..|+..+...++..+. ++.-|..-...+...+++++|.--.+.-.+.... ........-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence 4555666666666666666665443 3455555555566666666665554443332111 1122333333444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHH
Q 004244 517 EACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGF-LPDVVTYSVL-INGLNKQARTMEAKKLLLK 594 (766)
Q Consensus 517 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l-i~~~~~~g~~~~A~~l~~~ 594 (766)
+|.+.++.- ..+ ....|+..++....... +|.-.+|..+ ..++...|++++|...-..
T Consensus 135 ~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 444444411 000 11112222222222111 2434444433 3445667777777777666
Q ss_pred HHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHH-------------HHHHH
Q 004244 595 LFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAV-------------YDIII 661 (766)
Q Consensus 595 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------~~~l~ 661 (766)
.++. .+...- ...+.+ .++.-.++.+.|...|++.+..+ |+... +..=+
T Consensus 195 ilkl--d~~n~~-al~vrg-------------~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 195 ILKL--DATNAE-ALYVRG-------------LCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred HHhc--ccchhH-HHHhcc-------------cccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhh
Confidence 6552 222211 111110 33445677778888887777643 43221 11122
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhc
Q 004244 662 HGHSKVGNVQKAYDLYKKMVRSGFVPHT-----VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHK 736 (766)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 736 (766)
.-..+.|++.+|.+.|.+.+ ++.|+. ..|.....+..+.|+.++|+.--+++++.+ +.-...+..-+.++..
T Consensus 257 N~~fk~G~y~~A~E~Yteal--~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEAL--NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhh--cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHH
Confidence 33557788888888888887 444443 445555566667788888888888888776 4445666667777778
Q ss_pred CCChhHHHHHHHHHHHCCCCCCC
Q 004244 737 EGNMDAVLNVLTEMAKDGLLPNS 759 (766)
Q Consensus 737 ~g~~~~A~~~~~~m~~~~~~~~~ 759 (766)
.++|++|++.++...+....+..
T Consensus 334 le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred HHHHHHHHHHHHHHHhhccccch
Confidence 88888888888877666554443
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00032 Score=62.47 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=71.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcH-HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCC--HHHH
Q 004244 581 KQARTMEAKKLLLKLFYDESVPSD-VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPN--EAVY 657 (766)
Q Consensus 581 ~~g~~~~A~~l~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~ 657 (766)
..++...+...++.+.... |+. ......+ .+...+...|++++|...|+.+.+....|+ ....
T Consensus 23 ~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l------------~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY--PSSPYAALAAL------------QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC--CCChHHHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 4666677777677776642 222 2111111 122566777777777777777776542222 2234
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 658 DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENI 715 (766)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (766)
..+...+...|++++|+..++..... ......+...+..+...|+.++|+..|+++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 45667777788888888877664322 223345556777777888888888877765
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=2.2e-05 Score=62.27 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=47.1
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHH
Q 004244 667 VGNVQKAYDLYKKMVRSGF-VPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLN 745 (766)
Q Consensus 667 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 745 (766)
.|++++|+.+++++.+... .++...+..++.++.+.|++++|+.++++ .+.+ +.+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4666777777777664421 12334455566777777777777777766 4333 2334444455677777777777777
Q ss_pred HHHH
Q 004244 746 VLTE 749 (766)
Q Consensus 746 ~~~~ 749 (766)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.93 E-value=1.2e-05 Score=51.42 Aligned_cols=30 Identities=57% Similarity=1.084 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCC
Q 004244 257 YNTLIDGYCKLGRIDDAFKLLRDMGLKGIE 286 (766)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 286 (766)
||++|.+|++.|++++|.++|++|...|+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~ 32 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIE 32 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 333333333333333333333333333333
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00019 Score=68.52 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=85.5
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGM 704 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~ 704 (766)
.-..+.+++++|+..|.++++ +.| |++.|..=..+|++.|.++.|++-.+..+. +.|.. .+|..|..++...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 456688999999999999999 456 777788888999999999999999999883 45654 789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004244 705 NEELSQVIENILRSCRLSDAELAKVLVEIN 734 (766)
Q Consensus 705 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 734 (766)
+++|+..|+++++.+ |.+......|-.+-
T Consensus 165 ~~~A~~aykKaLeld-P~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 165 YEEAIEAYKKALELD-PDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHHHhhhccC-CCcHHHHHHHHHHH
Confidence 999999999999998 45455555544433
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=1.3e-05 Score=51.11 Aligned_cols=34 Identities=41% Similarity=0.722 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCH
Q 004244 221 TYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANV 254 (766)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 254 (766)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.90 E-value=0.00024 Score=61.87 Aligned_cols=89 Identities=9% Similarity=-0.046 Sum_probs=43.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCC
Q 004244 660 IIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEG 738 (766)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 738 (766)
+...+...|++++|..+|+-+... .|.. ..|..|+.++...|++++|+..|.++...+ ++++..+.+++.++...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 344444555555555555554422 2222 334445555555555555555555555554 344455555555555555
Q ss_pred ChhHHHHHHHHHH
Q 004244 739 NMDAVLNVLTEMA 751 (766)
Q Consensus 739 ~~~~A~~~~~~m~ 751 (766)
+.+.|.+.|+...
T Consensus 118 ~~~~A~~aF~~Ai 130 (157)
T PRK15363 118 NVCYAIKALKAVV 130 (157)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555443
No 148
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.90 E-value=0.00055 Score=60.22 Aligned_cols=93 Identities=13% Similarity=0.092 Sum_probs=42.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 468 STIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTE 547 (766)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 547 (766)
..+...+...|++++|...++.+...+. .+...+..+...+...|++++|...++...+.+ +.+...+..+...+...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 3334444444555555555544444321 134444444444444455555555555444432 33334444444444455
Q ss_pred CChHHHHHHHHHHHH
Q 004244 548 GDIPQALRLHDEMIQ 562 (766)
Q Consensus 548 g~~~~A~~~~~~~~~ 562 (766)
|++++|...++...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555544444
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00023 Score=57.81 Aligned_cols=95 Identities=18% Similarity=0.080 Sum_probs=59.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhc
Q 004244 657 YDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHK 736 (766)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 736 (766)
+..++..+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++++++.. +.+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445556666677777777777666432 2223555566666666677777777777776665 3344556666677777
Q ss_pred CCChhHHHHHHHHHHHC
Q 004244 737 EGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 737 ~g~~~~A~~~~~~m~~~ 753 (766)
.|++++|.+.+.+..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 77777777777666543
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.80 E-value=3.1e-05 Score=48.98 Aligned_cols=28 Identities=36% Similarity=0.718 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 004244 222 YNVLIRGFCGVGDLEMGLRFFSEMEKNN 249 (766)
Q Consensus 222 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 249 (766)
|++++.+|++.|+++.|.++|++|.+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333333333333333333333333333
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.79 E-value=3.5e-05 Score=48.78 Aligned_cols=33 Identities=36% Similarity=0.652 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC
Q 004244 255 VTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEP 287 (766)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 287 (766)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.75 E-value=0.00042 Score=59.32 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=47.4
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 004244 624 ALLKGFCMKGLMNEADRVFELMLQRNHM-P-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH----TVTIIVLVK 697 (766)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~ 697 (766)
.+...+...|++++|.+.|+.+.+.... | ....+..++.++.+.|++++|...++++.... |+ ..++..++.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHH
Confidence 3344455556666666666555543211 0 12334445555555566666666655555321 22 234445555
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 004244 698 ALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
++.+.|+.++|...++++++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 5555555555555555555554
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.74 E-value=0.0011 Score=68.38 Aligned_cols=123 Identities=16% Similarity=0.112 Sum_probs=81.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 468 STIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTE 547 (766)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 547 (766)
..|+..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|++++.+.++.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344455555667777777777777653 33 33346666666677777777777777553 44555555556667777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004244 548 GDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLF 596 (766)
Q Consensus 548 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 596 (766)
++++.|+++.+++.+. .+-+..+|..|..+|.+.|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7778888877777765 23344577777888888888888877777664
No 154
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00041 Score=55.83 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=62.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHHcCCCC-----cHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 004244 153 VKSYSHLNMIDKAVNIVNLAKVHGF-MPGVLSYNAILDSVIRSGRNN-----WVKFAEEVYNEMGKSRVSPNVYTYNVLI 226 (766)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~-----~~~~a~~~~~~m~~~g~~~~~~~~~~li 226 (766)
|..+...+++..-..+|+.+++.|+ .|++.+||.+|.+.++..-.. -+-..+.+|..|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4555566999999999999999999 999999999999998865210 1245777888888888888888888888
Q ss_pred HHHHh
Q 004244 227 RGFCG 231 (766)
Q Consensus 227 ~~~~~ 231 (766)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77654
No 155
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.69 E-value=0.07 Score=53.08 Aligned_cols=248 Identities=17% Similarity=0.197 Sum_probs=153.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004244 476 RSQELDKAFDTKREMVEKGVLPDTITY----SSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIP 551 (766)
Q Consensus 476 ~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (766)
-.|+++.|.+-|+.|.. |+.+- ..|.-.-.+.|..+.|.++-++....- +.-.-.+...+...|..|+|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 45677777777777765 23332 222222345677777777777766542 223445667777888888888
Q ss_pred HHHHHHHHHHHC-CCCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHH
Q 004244 552 QALRLHDEMIQK-GFLPDVVT--YSVLINGLN---KQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAAL 625 (766)
Q Consensus 552 ~A~~~~~~~~~~-g~~p~~~~--~~~li~~~~---~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l 625 (766)
.|+++.+.-... -+.++..- -..|+.+-. -..+...|...-.+..+ ..||.+--..+-.
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AA------------- 270 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAA------------- 270 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHH-------------
Confidence 888888766543 23344322 122222211 12345555555555544 4555443322222
Q ss_pred HhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHHhcC
Q 004244 626 LKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVR-SGFVPHT-VTIIVLVKALHTAG 703 (766)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~-~~~~~l~~~~~~~g 703 (766)
..+.+.|+..++-.+++.+.+.. |.+.++. +..+.+.|+. ++.-++++.+ ..++||. ++...+..+....|
T Consensus 271 -ralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 271 -RALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred -HHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 67889999999999999999854 5555443 3334566654 3333333221 1345665 77778888889999
Q ss_pred ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcC-CChhHHHHHHHHHHHC
Q 004244 704 MNEELSQVIENILRSCRLSDAELAKVLVEINHKE-GNMDAVLNVLTEMAKD 753 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 753 (766)
++..|..-.+.+.... +....|..+.++-... |+-.++..++-+.++.
T Consensus 344 e~~~ARa~Aeaa~r~~--pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 344 EFSAARAKAEAAAREA--PRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHhhhC--chhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999998888887764 5567777788776654 9988888888776654
No 156
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.12 Score=55.25 Aligned_cols=207 Identities=14% Similarity=0.086 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCC
Q 004244 286 EPNLISYNVIINGLCKEGRLKETKGILNEISRK-GLVPDEVTYNTL-------LNGYCKEGNLHQALVLHAEMVRNGLSP 357 (766)
Q Consensus 286 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~g~~~ 357 (766)
.|....|..+.......-.++.|...|-+.... |++.-.. ...+ ...-.--|++++|+++|-++-++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 366777777776666666666666666554331 2211000 0000 011122477888888887766542
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 358 NVVTYTSLINSMCKSGNLNRAMEFFDQMHVR-ELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALI 436 (766)
Q Consensus 358 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll 436 (766)
.-|..+.+.|++-...++++.--.. .-..-..+|+.+...+.....+++|.+.|..-... ...+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 2355666777776666655431111 00112456777777777777788887777653221 2235
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004244 437 KGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRIT 516 (766)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 516 (766)
.++.+..++++-+.+-..+. .+....-.+.+++.+.|.-++|.+.+-+-.. | ...+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHH
Confidence 55555555555554444333 3455566677788888888887776543221 1 12355677777777
Q ss_pred HHHHHHHHH
Q 004244 517 EACELFQEM 525 (766)
Q Consensus 517 ~A~~~~~~m 525 (766)
+|.++-+..
T Consensus 896 ~avelaq~~ 904 (1189)
T KOG2041|consen 896 EAVELAQRF 904 (1189)
T ss_pred HHHHHHHhc
Confidence 777776654
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=8e-05 Score=59.06 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 004244 632 KGLMNEADRVFELMLQRNHM-PNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELS 709 (766)
Q Consensus 632 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~ 709 (766)
.|+++.|+.+++++.+.... |+...+..++.+|.+.|++++|++++++ . ...|.. .....++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999999975431 2455666689999999999999999998 3 223333 44456689999999999999
Q ss_pred HHHHHH
Q 004244 710 QVIENI 715 (766)
Q Consensus 710 ~~~~~~ 715 (766)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999874
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.66 E-value=0.0011 Score=61.03 Aligned_cols=101 Identities=13% Similarity=0.126 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH--TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVL 730 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 730 (766)
....+..++..+...|++++|+..++++++....+. ...+..++..+...|++++|...++++++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677788888888999999999998885432222 3567788888889999999999999998876 4556777777
Q ss_pred HHHHhcCCC--------------hhHHHHHHHHHHHCC
Q 004244 731 VEINHKEGN--------------MDAVLNVLTEMAKDG 754 (766)
Q Consensus 731 ~~~~~~~g~--------------~~~A~~~~~~m~~~~ 754 (766)
+.++...|+ +++|.+.+++....+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 888877776 456666666655543
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.031 Score=56.01 Aligned_cols=110 Identities=15% Similarity=-0.041 Sum_probs=70.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 004244 578 GLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPN-EAV 656 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 656 (766)
-..+.|++.+|.+.+.+.+. +.|+..--++.+-. -......+.|+..+|+.-.+...+ ++|. ...
T Consensus 258 ~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~----------nra~v~~rLgrl~eaisdc~~Al~--iD~syika 323 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYG----------NRALVNIRLGRLREAISDCNEALK--IDSSYIKA 323 (486)
T ss_pred hHhhccchhHHHHHHHHhhc--CCccccchhHHHHH----------HhHhhhcccCCchhhhhhhhhhhh--cCHHHHHH
Confidence 34688999999999999987 45554443333310 001456788999999999988887 3331 233
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 004244 657 YDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALHT 701 (766)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 701 (766)
|..-..++...++|++|.+-+++..+....+. ..++.....++-+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 44445566678999999999999875433322 2444444444443
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.63 E-value=0.0012 Score=57.70 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=78.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
..+...|++++|.++|+.+.. +.| +..-|..|+-++-..|++++|++.|.++.... +-|+..+-.++.++...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 567789999999999999998 446 67788899999999999999999999998654 34457788899999999999
Q ss_pred HHHHHHHHHHHHcC
Q 004244 706 EELSQVIENILRSC 719 (766)
Q Consensus 706 ~~A~~~~~~~~~~~ 719 (766)
+.|.+.|+.++...
T Consensus 120 ~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 120 CYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999874
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.0012 Score=68.34 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=85.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVP-HTVTIIVLVKALHTAGM 704 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 704 (766)
..+...|++++|+..|+++++.. | +...|..+..+|.+.|++++|+..++++++. .| +...|..++.++...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCC
Confidence 56678899999999999999853 4 7888999999999999999999999999964 45 45788889999999999
Q ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 004244 705 NEELSQVIENILRSCRLSDAELAKVLVEI 733 (766)
Q Consensus 705 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 733 (766)
+++|+..++++++.+ +.+......+..+
T Consensus 86 ~~eA~~~~~~al~l~-P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLA-PGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999998 4555554444433
No 162
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.056 Score=57.58 Aligned_cols=202 Identities=11% Similarity=0.093 Sum_probs=121.6
Q ss_pred CcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhC-CCCC--------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 004244 251 LANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLK-GIEP--------NLISYNVIINGLCKEGRLKETKGILNEISRKGLV 321 (766)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 321 (766)
.|....|..+.......-.++.|+..|-+...- |++. +...-.+-|.+| -|++++|.+++-+|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 477788888887777777777777777655331 2210 111112223333 488999999988876643
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 004244 322 PDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPN----VVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTY 397 (766)
Q Consensus 322 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 397 (766)
..|..+.+.|++-...++++. .|-..| ...|+.+...+.....+++|.+.|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 235666777887777666543 111111 346788888888888888888888764321
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 004244 398 TTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRS 477 (766)
Q Consensus 398 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 477 (766)
...+.++.+..++++-+.+-+.+ +.+....-.+..++...|.-++|.+.+-+- +.+ .+-+..+...
T Consensus 826 e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHH
Confidence 23456666666666555554443 335555666777788888877777665322 111 1234555666
Q ss_pred CCHHHHHHHHHH
Q 004244 478 QELDKAFDTKRE 489 (766)
Q Consensus 478 g~~~~A~~~~~~ 489 (766)
+++.+|.++-+.
T Consensus 892 nQW~~avelaq~ 903 (1189)
T KOG2041|consen 892 NQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHh
Confidence 677777666544
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0021 Score=62.00 Aligned_cols=122 Identities=15% Similarity=0.145 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHH
Q 004244 637 EADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTA---GMNEELSQVI 712 (766)
Q Consensus 637 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~ 712 (766)
....-++.-+.. .| |...|..|+..|...|+.+.|...|.++.+.. .+++..+..+..++..+ .+..++...+
T Consensus 140 ~l~a~Le~~L~~--nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 140 ALIARLETHLQQ--NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 333334444443 25 88999999999999999999999999998542 34457777788777644 2457899999
Q ss_pred HHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCCCCC
Q 004244 713 ENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLPNSGRS 762 (766)
Q Consensus 713 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 762 (766)
+++++.+ +.+......|+-.+..+|++.+|...|+.|.+....-+++.+
T Consensus 217 ~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 217 RQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 9999998 677888888999999999999999999999999887777654
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=6.4e-05 Score=46.33 Aligned_cols=25 Identities=44% Similarity=1.107 Sum_probs=9.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHh
Q 004244 257 YNTLIDGYCKLGRIDDAFKLLRDMG 281 (766)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~l~~~m~ 281 (766)
|+++|++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.59 E-value=0.0017 Score=54.69 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=48.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC---H-HHHHHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPN--EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH---T-VTIIVLVKALH 700 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~-~~~~~l~~~~~ 700 (766)
.++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|+.++++.... .|+ . .....+.-++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 445556666666666666666554432 334555566666666666666666665532 132 1 12222334555
Q ss_pred hcCChHHHHHHHHHHHH
Q 004244 701 TAGMNEELSQVIENILR 717 (766)
Q Consensus 701 ~~g~~~~A~~~~~~~~~ 717 (766)
..|+.++|+..+-..+.
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666655554
No 166
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00034 Score=53.00 Aligned_cols=63 Identities=17% Similarity=0.085 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCC-ChhHHHHHHHHHHH
Q 004244 689 TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEG-NMDAVLNVLTEMAK 752 (766)
Q Consensus 689 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 752 (766)
..+|..++..+...|++++|+..|+++++.+ |.+..++..++.++.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555666666666666666666666665 445556666666666666 46666666665544
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.58 E-value=0.014 Score=51.58 Aligned_cols=134 Identities=14% Similarity=0.096 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHH
Q 004244 566 LPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELM 645 (766)
Q Consensus 566 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (766)
.|++..-..|..++...|++.||...|++...--..-|......+- ++....+++.+|...++.+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA---------------~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLA---------------QAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHH---------------HHHHhhccHHHHHHHHHHH
Confidence 4666666667777777777777777777776544444554444444 6666677777777777777
Q ss_pred HhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 646 LQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENIL 716 (766)
Q Consensus 646 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (766)
-+....- ++.+...+.+.|...|++.+|...|+.+++ .-|+...-......+.++|+.++|..-+..+.
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6643110 233344566777777777777777777774 34665555555666667776666655544443
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.0058 Score=61.36 Aligned_cols=196 Identities=12% Similarity=0.123 Sum_probs=101.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 508 GLCEQRRITEACELFQEMLSRGM---SPD--EFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQ 582 (766)
Q Consensus 508 ~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 582 (766)
.|...|++++|.+.|.+..+... .+. ...|......|.+ +++++|.+.+++. +..|...
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A---------------~~~y~~~ 107 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKA---------------IEIYREA 107 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH---------------HHHHHHC
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHH---------------HHHHHhc
Confidence 35555666666666655533100 000 1122233333322 2555555555544 3445666
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhc-CCHHHHHHHHHHHHh----CCCCC--CHH
Q 004244 583 ARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMK-GLMNEADRVFELMLQ----RNHMP--NEA 655 (766)
Q Consensus 583 g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~----~~~~p--~~~ 655 (766)
|++..|-+.+.++- ..|... |++++|++.|++..+ .+ .+ -..
T Consensus 108 G~~~~aA~~~~~lA------------------------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~ 156 (282)
T PF14938_consen 108 GRFSQAAKCLKELA------------------------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAE 156 (282)
T ss_dssp T-HHHHHHHHHHHH------------------------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred CcHHHHHHHHHHHH------------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHH
Confidence 66666666655542 445555 677777777777653 12 11 133
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-----CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CChHH
Q 004244 656 VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVP-----HT-VTIIVLVKALHTAGMNEELSQVIENILRSCR----LSDAE 725 (766)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~ 725 (766)
++..++..+.+.|++++|+++|++........ +. ..+...+-++...|+...|...+++....++ ..+..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 45667777888888888888888876543221 11 1223334455567888888888888776643 12344
Q ss_pred HHHHHHHHHhc--CCChhHHHHHHHHH
Q 004244 726 LAKVLVEINHK--EGNMDAVLNVLTEM 750 (766)
Q Consensus 726 ~~~~l~~~~~~--~g~~~~A~~~~~~m 750 (766)
....|++++-. ...+++|+.-|+.+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 45556666543 33445555444443
No 169
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.0017 Score=55.42 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--hHHHHH
Q 004244 655 AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH----TVTIIVLVKALHTAGMNEELSQVIENILRSCRLS--DAELAK 728 (766)
Q Consensus 655 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~ 728 (766)
.++..++..+.+.|++++|.+.+++++... |+ ...+..++.++.+.|++++|...+++++...+.. ....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 356677888999999999999999998542 33 3567778999999999999999999999876432 356788
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 004244 729 VLVEINHKEGNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 729 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 756 (766)
.++.++.+.|++++|.+.++++.+....
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 8999999999999999999999988643
No 170
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.56 E-value=0.0011 Score=68.55 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=88.4
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004244 389 ELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKN--GFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVS 466 (766)
Q Consensus 389 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 466 (766)
+.+.+......+++.+....+.+++..++-+.... ....-..|..++++.|.+.|..+++..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33456666777777777777777777777777664 2222234456778888888888888888887777788888888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 467 YSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQ 512 (766)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 512 (766)
+|.|++.+.+.|++..|.++..+|..++...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777776666666666656555544
No 171
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.56 E-value=7.9e-05 Score=45.90 Aligned_cols=31 Identities=42% Similarity=0.819 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 004244 220 YTYNVLIRGFCGVGDLEMGLRFFSEMEKNNC 250 (766)
Q Consensus 220 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 250 (766)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788899999999999999999999888764
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.54 E-value=0.0011 Score=68.82 Aligned_cols=94 Identities=13% Similarity=-0.092 Sum_probs=81.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Q 004244 660 IIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGN 739 (766)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 739 (766)
-+..+...|++++|++.|+++++.. +-+...|..++.++...|++++|+..++++++.+ +.+...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3556778999999999999999653 3345778888999999999999999999999998 6678889999999999999
Q ss_pred hhHHHHHHHHHHHCCC
Q 004244 740 MDAVLNVLTEMAKDGL 755 (766)
Q Consensus 740 ~~~A~~~~~~m~~~~~ 755 (766)
+++|...+++..+.+.
T Consensus 86 ~~eA~~~~~~al~l~P 101 (356)
T PLN03088 86 YQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999887654
No 173
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.14 Score=52.17 Aligned_cols=446 Identities=12% Similarity=0.145 Sum_probs=212.2
Q ss_pred HhcCChhhHHHHHHHHHhCCCC-c----CHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HHc
Q 004244 230 CGVGDLEMGLRFFSEMEKNNCL-A----NVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGL--CKE 302 (766)
Q Consensus 230 ~~~g~~~~A~~~~~~m~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~--~~~ 302 (766)
-++++..+|.++|.++.+.--. | ..+.-+.++++|.. ++.+.....+.+.... .| ...|-.+..++ .+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 3556666666666666543110 0 12233455555543 3444444444444332 12 22344443332 256
Q ss_pred CChhHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCChHHHHH
Q 004244 303 GRLKETKGILNEISRK--GLVP------------DEVTYNTLLNGYCKEGNLHQALVLHAEMVRN----GLSPNVVTYTS 364 (766)
Q Consensus 303 g~~~~a~~~~~~m~~~--g~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~~~ 364 (766)
+.+.+|.+.+...... +..| |-..-+..++.+...|++.+++.+++++... ....++.+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 6777777766655543 2221 1222244566677888888888877777653 33367777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 365 LINSMCKSGNLNRAMEFFDQMHVR---ELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCT 441 (766)
Q Consensus 365 li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~ 441 (766)
++-++.+. .|-++.+. .+-|+ |--++-.|.+.=+. ++.-.-..+.|.......++....-
T Consensus 173 ~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 173 AVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHh
Confidence 66555432 22222221 11111 22223233221100 0000000112222222222222111
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCC
Q 004244 442 --GGRVEDAVGVLHGMARKGLAPDVV-SYSTIISGFSRSQELDKAFDTKREMVEKGVL----PDTITYSSLIHGLCEQRR 514 (766)
Q Consensus 442 --~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~li~~~~~~g~ 514 (766)
..+..--.+++......-+.|+.. ....++..+.+ +.+++..+.+.+....+. -=..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111122222233223333333322 22333333333 344444444333322110 023457777777788888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh----cCChHHHHHHHHHHHHCCCCC-CHHHHH-HHHHHHHh
Q 004244 515 ITEACELFQEMLSRGMSPDEFTY-------TTLINAYCT----EGDIPQALRLHDEMIQKGFLP-DVVTYS-VLINGLNK 581 (766)
Q Consensus 515 ~~~A~~~~~~m~~~~~~p~~~~~-------~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p-~~~~~~-~li~~~~~ 581 (766)
...|.+.+..+... .|+...- ..+.+..|. .-+..+-+.++++....++.- ..+.|- .-+.-+.+
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh
Confidence 88888877776654 3332211 122233331 122333445555555442211 011221 12233455
Q ss_pred cCC-HHHHHHHHHHHHhCCCCCcHHhH-HHHhhhhchhhhhhHHHHHhhhhh---cCCHHHHHHHHHHHHhCCCCC----
Q 004244 582 QAR-TMEAKKLLLKLFYDESVPSDVIY-NTLIENCTNIEFQNVAALLKGFCM---KGLMNEADRVFELMLQRNHMP---- 652 (766)
Q Consensus 582 ~g~-~~~A~~l~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p---- 652 (766)
.|. -++|+++++..++ +.+..... |.+. ..+- ..|.. ...+.+-..+-+-+.+.|+.|
T Consensus 392 ~g~~dekalnLLk~il~--ft~yD~ec~n~v~--------~fvK---q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQ--FTNYDIECENIVF--------LFVK---QAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred cCCccHHHHHHHHHHHH--hccccHHHHHHHH--------HHHH---HHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 565 7889999988876 33332222 2221 0000 12221 223344444444555777776
Q ss_pred CHHHHHHHHHH--HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 653 NEAVYDIIIHG--HSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENI 715 (766)
Q Consensus 653 ~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (766)
+...-|.|.++ +..+|++.++.-.-.-+. .+.|++.+|+.++-++....++++|..++..+
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34556666665 457899998876655554 36788899999988888999999999988765
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.50 E-value=0.019 Score=50.79 Aligned_cols=119 Identities=12% Similarity=0.129 Sum_probs=97.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSG---FVPHTVTIIVLVKALHTAG 703 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g 703 (766)
.+....|+..+|...|++...--...|......+..+....++.-+|...++++.+.. -.| .+...+...+...|
T Consensus 97 ~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~~Ll~aR~laa~g 174 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DGHLLFARTLAAQG 174 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--CchHHHHHHHHhcC
Confidence 7888999999999999998864444588899999999999999999999999987543 223 44566889999999
Q ss_pred ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004244 704 MNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (766)
+.++|...|+.++...+.+...++ ....+.++|+.++|..-+..
T Consensus 175 ~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 175 KYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHH
Confidence 999999999999998755555554 57888999988887654433
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.49 E-value=0.0014 Score=52.92 Aligned_cols=91 Identities=21% Similarity=0.171 Sum_probs=76.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 706 (766)
..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+++..+.. +.+..++..++..+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 67788999999999999998753 2255778888999999999999999999988653 334467888899999999999
Q ss_pred HHHHHHHHHHHcC
Q 004244 707 ELSQVIENILRSC 719 (766)
Q Consensus 707 ~A~~~~~~~~~~~ 719 (766)
+|...++++.+..
T Consensus 86 ~a~~~~~~~~~~~ 98 (100)
T cd00189 86 EALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHccC
Confidence 9999999988765
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.47 E-value=0.0092 Score=59.92 Aligned_cols=112 Identities=18% Similarity=0.269 Sum_probs=76.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKV-GNVQKAYDLYKKMVR----SGFVPH--TVTIIVLVKAL 699 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~----~~~~p~--~~~~~~l~~~~ 699 (766)
..|...|++..|-+.+. .++..|... |++++|++.|+++.+ .+ .+. ..++..++..+
T Consensus 102 ~~y~~~G~~~~aA~~~~---------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLK---------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHCT-HHHHHHHHH---------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHH
Confidence 45566666666655544 455567777 899999999999863 23 222 25666788899
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-----hH-HHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 700 HTAGMNEELSQVIENILRSCRLS-----DA-ELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 700 ~~~g~~~~A~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
.+.|++++|+..|+++....... .. ..+...+-++...|+...|.+.+++.....
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999998763211 22 334556667788999999999999987664
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.00048 Score=51.36 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=27.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 696 VKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
+..+...|++++|+..++++++.. |.+...+..++.++...|++++|...++++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555555555555544 34445555555555555555555555555443
No 178
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.47 E-value=0.002 Score=66.75 Aligned_cols=124 Identities=10% Similarity=0.110 Sum_probs=102.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004244 424 GFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARK--GLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTIT 501 (766)
Q Consensus 424 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 501 (766)
+.+.+......+++.+....+++++..++...... ....-..+..+++..|...|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567777888888888888899999999888775 2222344556999999999999999999999889999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 502 YSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTE 547 (766)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 547 (766)
++.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887677777776666666554
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0011 Score=63.34 Aligned_cols=90 Identities=16% Similarity=0.074 Sum_probs=78.7
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Q 004244 662 HGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNM 740 (766)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 740 (766)
.-+.+.+++++|+..|.++++ +.|.. +.|..=+.+|.+.|+++.|++-.+.++..+ |.....|.+|+.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 346689999999999999995 45655 556677899999999999999999999998 77899999999999999999
Q ss_pred hHHHHHHHHHHHCC
Q 004244 741 DAVLNVLTEMAKDG 754 (766)
Q Consensus 741 ~~A~~~~~~m~~~~ 754 (766)
++|++.|++.++..
T Consensus 166 ~~A~~aykKaLeld 179 (304)
T KOG0553|consen 166 EEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHHhhhccC
Confidence 99999998776654
No 180
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.38 E-value=0.004 Score=61.79 Aligned_cols=133 Identities=15% Similarity=0.021 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHH
Q 004244 571 TYSVLINGLNKQARTMEAKKLLLKLFY----DESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELM 645 (766)
Q Consensus 571 ~~~~li~~~~~~g~~~~A~~l~~~~~~----~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (766)
.|..|.+.|.-.|+++.|+..-+.-+. -|-... ...+..+. .++.-.|+++.|.+.|+..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlg---------------N~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLG---------------NCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccc---------------hhhhhhcccHhHHHHHHHH
Confidence 445555555666788888766544322 111111 11222222 6777788888888888765
Q ss_pred H----hCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHH----HcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 646 L----QRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMV----RSG-FVPHTVTIIVLVKALHTAGMNEELSQVIENI 715 (766)
Q Consensus 646 ~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (766)
. +.|-.. ......+|...|.-...+++|++++.+=+ +.+ ..-....+..|..++...|..++|..+.++.
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4 222221 34455677888888888888988877633 111 1122356667888888889999999888887
Q ss_pred HHc
Q 004244 716 LRS 718 (766)
Q Consensus 716 ~~~ 718 (766)
++.
T Consensus 342 l~~ 344 (639)
T KOG1130|consen 342 LRS 344 (639)
T ss_pred HHH
Confidence 654
No 181
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.36 E-value=0.22 Score=50.76 Aligned_cols=435 Identities=13% Similarity=0.123 Sum_probs=244.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCC----HhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--
Q 004244 156 YSHLNMIDKAVNIVNLAKVHG-FMPG----VLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRG-- 228 (766)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~g-~~~~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-- 228 (766)
+-+.+++.+|.++|.++-+.- -.|. ....+.+|+++...+ ++.-.....+..+. .| ...|-.+..+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n----ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN----LDLMEKQLMELRQQ--FG-KSAYLPLFKALV 88 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh----HHHHHHHHHHHHHh--cC-CchHHHHHHHHH
Confidence 356788999999998775431 1121 334577888888766 35566666665543 23 2334444444
Q ss_pred HHhcCChhhHHHHHHHHHhC--CCCc------------CHHHHHHHHHHHHHcCChhHHHHHHHHHhhC----CCCCCHH
Q 004244 229 FCGVGDLEMGLRFFSEMEKN--NCLA------------NVVTYNTLIDGYCKLGRIDDAFKLLRDMGLK----GIEPNLI 290 (766)
Q Consensus 229 ~~~~g~~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~ 290 (766)
+.+.+.+.+|.+.+..-.+. +..| |-..-+..++++...|++.+++.++++|..+ .+.-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 35789999999888776544 2222 2233367778888999999999999888654 3346788
Q ss_pred HHHHHHHHHHHc-------C-C-------hhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhc--CChHHHHHHH
Q 004244 291 SYNVIINGLCKE-------G-R-------LKETKGILNEISRK------GLVPDEVTYNTLLNGYCKE--GNLHQALVLH 347 (766)
Q Consensus 291 ~~~~li~~~~~~-------g-~-------~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~A~~~~ 347 (766)
+|+.++-.+.+. + . ++.+.-...+|... .+.|.......++....-. .+..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 888755444332 1 1 22333333333321 1233333333333332211 1222223333
Q ss_pred HHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004244 348 AEMVRNGLSPNVV-TYTSLINSMCKSGNLNRAMEFFDQMHVRELR----PNEKTYTTLINGFSQHGFLDEAYRLLNEMTK 422 (766)
Q Consensus 348 ~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 422 (766)
+.....-+.|+-. +...|...+.. +.+++..+-+.+....+. .=..++..++....+.++..+|.+.+.-+..
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3333444455433 23344444444 555555555544433211 1356788888888999999999888877765
Q ss_pred CCCCCCHHHH-------HHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHccCC-HHHHHHHH
Q 004244 423 NGFMPSIVTY-------NALIKGHCTG----GRVEDAVGVLHGMARKGLAPDVVSYSTII---SGFSRSQE-LDKAFDTK 487 (766)
Q Consensus 423 ~g~~~~~~~~-------~~ll~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~ 487 (766)
- .|+...- ..+-+..|.. -+..+-+.+++.....++.. ...-.-|+ .-+-+.|. -++|++++
T Consensus 327 l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 327 L--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred c--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4 2333211 1222333311 12333444555554443321 11111222 22444555 78899999
Q ss_pred HHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCChHHHH
Q 004244 488 REMVEKGVLPDTITYSSLI----HGLCE---QRRITEACELFQEMLSRGMSPDEF----TYTTLINA--YCTEGDIPQAL 554 (766)
Q Consensus 488 ~~m~~~~~~p~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~--~~~~g~~~~A~ 554 (766)
+.+..-. .-|...-+.+. ..|.+ ...+.+-..+-+-+.+.|++|-.+ .-|.|.++ +...|++.++.
T Consensus 404 k~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 404 KLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9887642 11333332221 22322 234445555555556678776543 33444443 34679999887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 004244 555 RLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTL 610 (766)
Q Consensus 555 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l 610 (766)
-.-.-+.+ +.|++.+|.-+.-++....++++|.+.+.++ +|+..++++-
T Consensus 483 ~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 483 LYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 66555554 6899999999999999999999999999876 5666666553
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.36 E-value=0.014 Score=63.31 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004244 635 MNEADRVFELMLQRN-HMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIE 713 (766)
Q Consensus 635 ~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 713 (766)
+..+.+..++..... ...++..|..+.-.+...|++++|...++++++. .|+...|..++..+...|+.++|...++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555544422 2236677888877777889999999999999965 5788899999999999999999999999
Q ss_pred HHHHcCCCC
Q 004244 714 NILRSCRLS 722 (766)
Q Consensus 714 ~~~~~~~~~ 722 (766)
+++..+|..
T Consensus 478 ~A~~L~P~~ 486 (517)
T PRK10153 478 TAFNLRPGE 486 (517)
T ss_pred HHHhcCCCC
Confidence 999998443
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.35 E-value=0.00088 Score=50.68 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcC
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAG-MNEELSQVIENILRSC 719 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 719 (766)
++.+|..++..+...|++++|+..|++.++.. +-+...|..++.++...| ++++|+..++++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 56788889999999999999999999998653 234478888899999999 7999999999998876
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.35 E-value=0.094 Score=51.00 Aligned_cols=59 Identities=10% Similarity=0.073 Sum_probs=46.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC--CChHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSCR--LSDAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
.++.-|.+.|.+..|+.-++.+++.-+ +........++++|.+.|..++|.++...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 456778888999999999999998742 33456677888999999999999888776654
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.35 E-value=0.0029 Score=51.12 Aligned_cols=72 Identities=21% Similarity=0.354 Sum_probs=31.9
Q ss_pred HHHHcCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004244 263 GYCKLGRIDDAFKLLRDMGLKGI-EPNLISYNVIINGLCKEG--------RLKETKGILNEISRKGLVPDEVTYNTLLNG 333 (766)
Q Consensus 263 ~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 333 (766)
.+...+++.....+|+.++..|+ -|++.+|+.++.+.++.. ++-+.+.+++.|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33333444444444444444444 444444444444443321 122334444444444455555555544444
Q ss_pred H
Q 004244 334 Y 334 (766)
Q Consensus 334 ~ 334 (766)
+
T Consensus 114 L 114 (120)
T PF08579_consen 114 L 114 (120)
T ss_pred H
Confidence 3
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.35 E-value=0.055 Score=52.61 Aligned_cols=176 Identities=14% Similarity=0.090 Sum_probs=83.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 365 LINSMCKSGNLNRAMEFFDQMHVRELRPNEKT---YTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCT 441 (766)
Q Consensus 365 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~ 441 (766)
....+...|++++|.+.|+++......+ ... .-.++.++.+.+++++|...+++..+........-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444455666666666666666653221 111 123445566666677777777666664322222223333333221
Q ss_pred --c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004244 442 --G---------------GR---VEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTIT 501 (766)
Q Consensus 442 --~---------------g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 501 (766)
. .+ ..+|...|+.+++ -|-...-..+|...+..+.+. =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 0 01 1223333333333 233333334444433333221 0001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 502 YSSLIHGLCEQRRITEACELFQEMLSR--GMSPDEFTYTTLINAYCTEGDIPQALRLHDEM 560 (766)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (766)
--.+..-|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.+....+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 113344566667777777777766654 22233445556666666667666666655444
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.33 E-value=0.0029 Score=57.89 Aligned_cols=86 Identities=17% Similarity=0.268 Sum_probs=43.8
Q ss_pred CCHhhHHHHHHHHHHc--CCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----------------CChhhHHH
Q 004244 179 PGVLSYNAILDSVIRS--GRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGV----------------GDLEMGLR 240 (766)
Q Consensus 179 ~~~~~~~~ll~~~~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~~ 240 (766)
.+..+|..+++.+.+. .+.+.++-....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 4555555555555543 12233455555566666666666666666666655442 12233444
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHH
Q 004244 241 FFSEMEKNNCLANVVTYNTLIDGY 264 (766)
Q Consensus 241 ~~~~m~~~g~~~~~~~~~~li~~~ 264 (766)
++++|...|+-||..++..+++.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHh
Confidence 444444444444444444444444
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.32 E-value=0.0035 Score=57.49 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 004244 635 MNEADRVFELMLQ-RNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH--TVTIIVLVKALHTAGMNEELSQV 711 (766)
Q Consensus 635 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 711 (766)
+..+...+..+.+ .+..-....|..++..+...|++++|+..+++++.....|. ..++..++..+...|+.++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445555555542 21111355677888888899999999999999985432221 25788889999999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHh-------cCCChhHHHHHHHH
Q 004244 712 IENILRSCRLSDAELAKVLVEINH-------KEGNMDAVLNVLTE 749 (766)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 749 (766)
+++++... +.....+..++.++. +.|++++|...+++
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99999886 444555666666666 88888866666554
No 189
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.0057 Score=61.13 Aligned_cols=129 Identities=13% Similarity=0.097 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 501 TYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCT-EGDIPQALRLHDEMIQKGFLPDVVTYSVLINGL 579 (766)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 579 (766)
+|..++....+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|.++|+..++. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444555555555555555555555332 2222333333333222 34444455555555544 444555555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcH---HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh
Q 004244 580 NKQARTMEAKKLLLKLFYDESVPSD---VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ 647 (766)
Q Consensus 580 ~~~g~~~~A~~l~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (766)
.+.|+.+.|..+|++.+.. +.++. ..|...+ +.-.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i---------------~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFI---------------EFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHH---------------HHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 11111 2444444 444455555555555555554
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.22 E-value=0.0022 Score=47.79 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=37.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 660 IIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
++..+.+.|++++|++.|+++++. .|+ ...+..++.++...|++++|..+++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345566677777777777777643 243 3566667777777777777777777777665
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.21 E-value=0.006 Score=55.88 Aligned_cols=105 Identities=17% Similarity=0.282 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH
Q 004244 216 SPNVYTYNVLIRGFCG-----VGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLI 290 (766)
Q Consensus 216 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 290 (766)
..|..+|..+++.|.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 4678888888888875 47788888899999999999999999999988654 3221 11111111
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004244 291 SYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGN 339 (766)
Q Consensus 291 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 339 (766)
-.-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 112 -----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 12335566777777777777777777777776655543
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.20 E-value=0.005 Score=60.30 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=55.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--ChHHHHHHH
Q 004244 657 YDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT----VTIIVLVKALHTAGMNEELSQVIENILRSCRL--SDAELAKVL 730 (766)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 730 (766)
|........+.|++++|+..|+.+++. .|+. ..+..++..+...|++++|...|+++++..+. .....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444443334556666666666666643 2332 34555666666666666666666666665322 134455556
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 731 VEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 731 ~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
+.++...|++++|.++++++.+...
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 6666666666666666666655543
No 193
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.16 E-value=0.021 Score=52.48 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=38.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 467 YSTIISGFSRSQELDKAFDTKREMVEKGVLPD--TITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAY 544 (766)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 544 (766)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44444444555555555555555443322111 2344445555555555555555555555432 22333444444444
Q ss_pred HhcCC
Q 004244 545 CTEGD 549 (766)
Q Consensus 545 ~~~g~ 549 (766)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.0017 Score=48.84 Aligned_cols=53 Identities=19% Similarity=0.360 Sum_probs=25.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 666 KVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
+.|++++|+++|+++.+.. +-+...+..++.++.+.|++++|..+++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455555555555555331 1233444455555555555555555555555554
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.13 E-value=0.038 Score=58.25 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 498 DTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQ 562 (766)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (766)
+..+...+..-+.+...+.-|-++|..|-+. ..++......++|++|..+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3344444444455556667777777776432 2456666777888888777766654
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.10 E-value=0.017 Score=48.64 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=77.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--hHHHHHHHHHH
Q 004244 658 DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT--VTIIVLVKALHTAGMNEELSQVIENILRSCRLS--DAELAKVLVEI 733 (766)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 733 (766)
..+..++-..|+.++|+.+|++.+..|..... ..+..+...+...|+.++|..++++.+...+.+ +......++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 34567788999999999999999998866543 567789999999999999999999999875331 34444557789
Q ss_pred HhcCCChhHHHHHHHHHHH
Q 004244 734 NHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 734 ~~~~g~~~~A~~~~~~m~~ 752 (766)
+...|+.++|++.+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999998876544
No 197
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.022 Score=52.22 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=64.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP--NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALH--- 700 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~--- 700 (766)
..+...|++++|+..|++.......| ...+|..+...+...|++++|++.+++++.. .|+ ..++..++..+.
T Consensus 43 ~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhh
Confidence 66778899999999999998653333 2457889999999999999999999999854 343 355666666666
Q ss_pred ----hcCChHHHHHHHHH
Q 004244 701 ----TAGMNEELSQVIEN 714 (766)
Q Consensus 701 ----~~g~~~~A~~~~~~ 714 (766)
..|++++|...+++
T Consensus 121 ~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 121 EQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHcccHHHHHHHHHH
Confidence 77887755444443
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.09 E-value=0.00088 Score=50.50 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=48.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 699 LHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
+.+.|++++|+..++++++.. |.+..++..++.+|.+.|++++|.++++++.....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 357899999999999999998 66788888999999999999999999998877654
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.03 E-value=0.016 Score=57.97 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHH
Q 004244 633 GLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT---VTIIVLVKALHTAGMNEELS 709 (766)
Q Consensus 633 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~ 709 (766)
++.+.|.++|+...+. +..+...|...++.+.+.|+.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+...
T Consensus 50 ~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~ 127 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVR 127 (280)
T ss_dssp S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3344455555554432 2224444444455555555555555555554422 11111 24444455445555555555
Q ss_pred HHHHHHHHc
Q 004244 710 QVIENILRS 718 (766)
Q Consensus 710 ~~~~~~~~~ 718 (766)
++.+++.+.
T Consensus 128 ~v~~R~~~~ 136 (280)
T PF05843_consen 128 KVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 200
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.02 E-value=0.04 Score=59.88 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 632 KGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 632 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
.|++++|...++++.+. .|+...|..++..+...|+.++|.+.++++.
T Consensus 433 ~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 433 KGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred cCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555542 2444555555555555555555555555554
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=96.98 E-value=0.0066 Score=53.34 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=64.9
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004244 624 ALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTA 702 (766)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 702 (766)
+....+...|++++|..+|+-+.-.+ | +..-|..|+.++-..+++++|+..|..+...+ .-|+......+.++...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHh
Confidence 44455567888888888888777633 3 66667777777778888888888887765433 22333344567778888
Q ss_pred CChHHHHHHHHHHHHc
Q 004244 703 GMNEELSQVIENILRS 718 (766)
Q Consensus 703 g~~~~A~~~~~~~~~~ 718 (766)
|+.+.|+..|+.++..
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 8888888888888774
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.91 E-value=0.13 Score=48.70 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=27.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004244 366 INSMCKSGNLNRAMEFFDQMHVRELR--PNEKTYTTLINGFSQHGFLDEAYRLLNEMTKN 423 (766)
Q Consensus 366 i~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 423 (766)
...+...|++++|.+.|+++...-.. --....-.++.++.+.|++++|...+++..+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444556666666666665554211 11233344455555666666666666665543
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.85 E-value=0.62 Score=46.70 Aligned_cols=282 Identities=13% Similarity=0.088 Sum_probs=139.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCH
Q 004244 372 SGNLNRAMEFFDQMHVRELRPNEKTYTTLINGF--SQHGFLDEAYRLLNEMTKNGFMPSIVTYN----ALIKGHCTGGRV 445 (766)
Q Consensus 372 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~~~~~~~~----~ll~~~~~~g~~ 445 (766)
.|+-..|.+.-.+-.+. +..|....-.++.+- .-.|+++.|.+-|+.|... +.+-. .|.-.--+.|+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccH
Confidence 34555555554443321 222333333333332 2356667777777666652 22221 111122345666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH---hcCCHHHHH
Q 004244 446 EDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKG-VLPDTIT--YSSLIHGLC---EQRRITEAC 519 (766)
Q Consensus 446 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~li~~~~---~~g~~~~A~ 519 (766)
+.|..+-+...+.-.. -...+...+...|..|+++.|+++++.-.... +.++..- -..|+.+-. -.-+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 6666666665554222 34556666677777777777777776544332 2222211 112222111 112344454
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004244 520 ELFQEMLSRGMSPDEF-TYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYD 598 (766)
Q Consensus 520 ~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 598 (766)
..-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+. .|.+..+..++. .+.|+.. +.-+++..+.
T Consensus 250 ~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~~--ar~gdta--~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYVR--ARSGDTA--LDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHHH--hcCCCcH--HHHHHHHHHH
Confidence 444444433 44432 2223445667777777777777777765 444444433332 3444332 2222222110
Q ss_pred -CCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCChHHHHHH
Q 004244 599 -ESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSK-VGNVQKAYDL 676 (766)
Q Consensus 599 -~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~ 676 (766)
.++|+...-..... .+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++...
T Consensus 322 ~slk~nnaes~~~va--------------~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 322 ESLKPNNAESSLAVA--------------EAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred HhcCccchHHHHHHH--------------HHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 13444333222221 455566777777666666655 34666667666666544 3777777777
Q ss_pred HHHHHHcC
Q 004244 677 YKKMVRSG 684 (766)
Q Consensus 677 ~~~m~~~~ 684 (766)
+.+.++..
T Consensus 386 lAqav~AP 393 (531)
T COG3898 386 LAQAVKAP 393 (531)
T ss_pred HHHHhcCC
Confidence 77776543
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.80 E-value=0.12 Score=48.95 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=34.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHhcCCChhHHH
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSCRLS--DAELAKVLVEINHKEGNMDAVL 744 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 744 (766)
.++.-+.+.|.+..|+..++.+++.-+.. .......++.+|.+.|..+.|.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 35677788888888888888888875322 2445667788888888877443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.76 E-value=0.029 Score=55.02 Aligned_cols=94 Identities=10% Similarity=0.094 Sum_probs=74.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP--NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH----TVTIIVLVKALH 700 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~ 700 (766)
....+.|++++|+..|+.+++..... ....+..++.+|...|++++|+..|+++++. .|+ ...+..++..+.
T Consensus 151 ~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 151 ALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHH
Confidence 34456799999999999999753221 1356778999999999999999999999854 233 356666788888
Q ss_pred hcCChHHHHHHHHHHHHcCCCC
Q 004244 701 TAGMNEELSQVIENILRSCRLS 722 (766)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~~~~~ 722 (766)
..|+.++|..+++++++..|..
T Consensus 229 ~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999987433
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.75 E-value=0.057 Score=48.03 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=46.3
Q ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHH-----HcCCCCCHHHH
Q 004244 622 VAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMV-----RSGFVPHTVTI 692 (766)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~ 692 (766)
+..++..+...|++++|....+.+... .| +...|..++.+|...|+..+|++.|+++. +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344557777888888888888888874 35 77788888888888888888888888764 34777776543
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.74 E-value=0.0051 Score=47.06 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=42.0
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 004244 662 HGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (766)
..|.+.+++++|++.+++++... +.+...+...+..+...|++++|...++++++.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45677888888888888887542 22345666677778888888888888888887763
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.68 E-value=0.92 Score=46.38 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhH-HHHhhh
Q 004244 536 TYTTLINAYCTEGDIPQALRLHDEMIQKG-FLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIY-NTLIEN 613 (766)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~-~~ll~~ 613 (766)
+|...++.-.+..-++.|..+|-+..+.| +.+++..+++++.-+ ..|+..-|..+|+--+.. -||...| ...+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl-- 473 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYL-- 473 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHH--
Confidence 44555555555556666666666666665 455666666666554 345555666666554432 2333222 2222
Q ss_pred hchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 614 CTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPN--EAVYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 614 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
.-+..-++-+.|..+|+..+++ +..+ ..+|..+++--..-|+...+..+=++|.
T Consensus 474 -------------~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 -------------LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred -------------HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 3444556666666666654432 1112 4456666666666666666666656555
No 209
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.68 E-value=0.6 Score=46.27 Aligned_cols=236 Identities=12% Similarity=0.049 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHH
Q 004244 501 TYSSLIHGLCEQRRITEACELFQEMLSR-GMSP---DEFTYTTLINAYCTEGDIPQALRLHDEMIQKGF-----LPDVVT 571 (766)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-----~p~~~~ 571 (766)
.|..+..++.+..++.+++.+-+.-... |..| .-....++.+++...+.++++++.|+...+... ......
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4445555555555555555554443332 2222 112334566777778889999999888775311 123457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh
Q 004244 572 YSVLINGLNKQARTMEAKKLLLKLFYD----ESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ 647 (766)
Q Consensus 572 ~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (766)
+..+...|.+..++++|.-+..+..+- ++..-..-|..+. +-.+.-++...|++.+|.+..++..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~----------lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS----------LYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH----------HHHHHHHHHHhcccccHHHHHHHHHH
Confidence 788888889999999988777665432 2222222233222 11223567788888888888877653
Q ss_pred ----CCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhc-----CChHHHHHHH
Q 004244 648 ----RNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVR----SGFVP-HTVTIIVLVKALHTA-----GMNEELSQVI 712 (766)
Q Consensus 648 ----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~-----g~~~~A~~~~ 712 (766)
.|-.+ .......+.+.|-..|+.|.|..-|+.+.. .|-+- ........++.+... +.--+|+++-
T Consensus 235 lal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n 314 (518)
T KOG1941|consen 235 LALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFN 314 (518)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 44333 233446778889999999999998887641 12111 112333333333222 2223466666
Q ss_pred HHHHHcCCCC-----hHHHHHHHHHHHhcCCChhHHHHH
Q 004244 713 ENILRSCRLS-----DAELAKVLVEINHKEGNMDAVLNV 746 (766)
Q Consensus 713 ~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~ 746 (766)
++.++..... --...-.++..|...|.-++-..-
T Consensus 315 ~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h 353 (518)
T KOG1941|consen 315 TRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAH 353 (518)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 6666542111 123445677788777766554433
No 210
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=1.5 Score=48.65 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH----HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004244 258 NTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVII----NGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNG 333 (766)
Q Consensus 258 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 333 (766)
..-++.+++...++-|..+.+.-. .|..+...+. +-+.+.|++++|...|-+-... ++|. .+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 344455555555555555544322 1222222222 2233455666655555444332 1221 12333
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 004244 334 YCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEA 413 (766)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 413 (766)
|....++.+-...++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 34444444444555555555543 33444555666666666555554444332 1111 11123344444444555555
Q ss_pred HHHHH
Q 004244 414 YRLLN 418 (766)
Q Consensus 414 ~~l~~ 418 (766)
..+-.
T Consensus 483 ~~LA~ 487 (933)
T KOG2114|consen 483 ELLAT 487 (933)
T ss_pred HHHHH
Confidence 44433
No 211
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.082 Score=51.31 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 004244 635 MNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVR 682 (766)
Q Consensus 635 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 682 (766)
..++..+|++++.. +| |..+...|...+.+.|++.+|...|+.|++
T Consensus 209 ta~a~~ll~~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 209 TAKARALLRQALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred cHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 34555555555553 23 444445555555555666666666655554
No 212
>PRK11906 transcriptional regulator; Provisional
Probab=96.58 E-value=0.11 Score=53.83 Aligned_cols=156 Identities=11% Similarity=0.047 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhC-CCCCcHHhHHHHhhhhchhhhhhHHHHHhhhh-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004244 585 TMEAKKLLLKLFYD-ESVPSDVIYNTLIENCTNIEFQNVAALLKGFC-MKGLMNEADRVFELMLQRNHMPNEAVYDIIIH 662 (766)
Q Consensus 585 ~~~A~~l~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 662 (766)
.+.|..+|.+.+.. ...|+...-...++.|.... ...+.. ......+|.++.++..+.+. -|+.+...++.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~------~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~ 346 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL------ALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH------HHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45667777777621 25566554444444333110 001111 35567788888888888542 28888888888
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHhcCCCh
Q 004244 663 GHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSD-AELAKVLVEINHKEGNM 740 (766)
Q Consensus 663 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 740 (766)
++.-.|+.+.|...|+++.. +.||. .+|...+..+.-.|+.++|.+.++++++.+|..- +.+....++.|+..+ .
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~ 423 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-L 423 (458)
T ss_pred HHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-h
Confidence 88889999999999999984 56776 6677777888899999999999999999985443 344455566888654 5
Q ss_pred hHHHHHHHHH
Q 004244 741 DAVLNVLTEM 750 (766)
Q Consensus 741 ~~A~~~~~~m 750 (766)
++|++++.+-
T Consensus 424 ~~~~~~~~~~ 433 (458)
T PRK11906 424 KNNIKLYYKE 433 (458)
T ss_pred hhhHHHHhhc
Confidence 7788777543
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.082 Score=53.31 Aligned_cols=99 Identities=12% Similarity=0.049 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004244 655 AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEIN 734 (766)
Q Consensus 655 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 734 (766)
.+++.+.-+|.+.+++.+|++..++.+..+ ++|......=+.++...|+++.|+..|+++++.. |.+..+-..|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345667777888888888888888887553 4555666667778888888888888888888887 44455555666555
Q ss_pred hcCCChhHH-HHHHHHHHHCCC
Q 004244 735 HKEGNMDAV-LNVLTEMAKDGL 755 (766)
Q Consensus 735 ~~~g~~~~A-~~~~~~m~~~~~ 755 (766)
-+.....+. .++|..|.++-.
T Consensus 336 ~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 544444333 667777765543
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.55 E-value=0.006 Score=47.40 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 656 VYDIIIHGHSKVGNVQKAYDLYKKMVRS--GFV---PH-TVTIIVLVKALHTAGMNEELSQVIENIL 716 (766)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (766)
+|+.++..|...|++++|++.+++.++. ... |+ ..++..++..+...|++++|.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554421 011 11 1333344444444444444444444444
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.51 E-value=0.011 Score=45.80 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-C-hHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 690 VTIIVLVKALHTAGMNEELSQVIENILRS----CRL-S-DAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
.++..++..+...|++++|+.+++++++. +.. + .+.++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56788889999999999999999998865 211 1 256788899999999999999999887654
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.45 E-value=0.019 Score=43.77 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=38.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS 683 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 683 (766)
..|...+++++|.+.++.++..+ | +...|...+.++.+.|++++|.+.+++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777642 3 5666666777777777777777777777744
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.42 E-value=0.12 Score=45.68 Aligned_cols=93 Identities=4% Similarity=-0.072 Sum_probs=78.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCC
Q 004244 659 IIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEG 738 (766)
Q Consensus 659 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 738 (766)
....-+...|++++|..+|.-+.-.+ .-+...|..|+.++-..+++++|+..|..+...+ ..++......+.+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 44556679999999999999987543 2345567788888899999999999999999887 567777888999999999
Q ss_pred ChhHHHHHHHHHHHC
Q 004244 739 NMDAVLNVLTEMAKD 753 (766)
Q Consensus 739 ~~~~A~~~~~~m~~~ 753 (766)
+.++|.+.|+...++
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999887763
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.93 Score=42.94 Aligned_cols=132 Identities=12% Similarity=0.038 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH-----HH
Q 004244 291 SYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYT-----SL 365 (766)
Q Consensus 291 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-----~l 365 (766)
.-+++++.+.-.|.+.-...++.+.++...+.++.....|...-.+.|+.+.|...|++..+..-..|..+.+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666667777777777777776655666677777777777777777777777665532222322222 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004244 366 INSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKN 423 (766)
Q Consensus 366 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 423 (766)
...|.-.+++.+|...|.++...+.. |....|.-.-+..-.|+..+|.+.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344456666666667666665322 4444454444444556666666666666664
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.38 E-value=1.4 Score=44.78 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCC
Q 004244 572 YSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHM 651 (766)
Q Consensus 572 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (766)
.+.-+.-+...|+...|.++-.+. -.||...|...+ .+++..++|++-.++... +
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki---------------~aLa~~~~w~eL~~fa~s--k---- 234 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKI---------------KALAENKDWDELEKFAKS--K---- 234 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHH---------------HHHHhcCCHHHHHHHHhC--C----
Confidence 333445555677777777766555 346777777767 777777777766654332 1
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004244 652 PNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVI 712 (766)
Q Consensus 652 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 712 (766)
-++.-|...+.+|.+.|+.++|..++.++ ++ ..-+..|.+.|++.+|.+..
T Consensus 235 KsPIGyepFv~~~~~~~~~~eA~~yI~k~------~~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 235 KSPIGYEPFVEACLKYGNKKEASKYIPKI------PD----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCCChHHHHHHHHHCCCHHHHHHHHHhC------Ch----HHHHHHHHHCCCHHHHHHHH
Confidence 13355666777777777777777777662 11 22345567777777776543
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.32 E-value=1.1 Score=43.08 Aligned_cols=222 Identities=21% Similarity=0.100 Sum_probs=125.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 004244 477 SQELDKAFDTKREMVEKGVLP-DTITYSSLIHGLCEQRRITEACELFQEMLSR-GMSPDEFTYTTLINAYCTEGDIPQAL 554 (766)
Q Consensus 477 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (766)
.+....+...+.......... ....+......+...++...+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355555555555555443221 2455566666677777777777777766642 22344455556666666667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCC----cHHhHHHHhhhhchhhhhhHHHHHhhh
Q 004244 555 RLHDEMIQKGFLPDVVTYSVLIN-GLNKQARTMEAKKLLLKLFYDESVP----SDVIYNTLIENCTNIEFQNVAALLKGF 629 (766)
Q Consensus 555 ~~~~~~~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~~~l~~~~ 629 (766)
+.+.........+ ......... .+...|++++|...+.+... ..| ....+.... ..+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~ 177 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALG---------------ALL 177 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhh---------------hHH
Confidence 7777776542222 122222222 56677777777777777644 222 111122211 335
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHH
Q 004244 630 CMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEE 707 (766)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 707 (766)
...++.++|...+....... .. ....+..+...+...+++++|...+...... .|+ ...+..+...+...|..++
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 178 EALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHH
Confidence 56667777777777776532 12 2455666666677777777777777776633 333 3334444444445566777
Q ss_pred HHHHHHHHHHcC
Q 004244 708 LSQVIENILRSC 719 (766)
Q Consensus 708 A~~~~~~~~~~~ 719 (766)
+...+++.....
T Consensus 255 ~~~~~~~~~~~~ 266 (291)
T COG0457 255 ALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHhC
Confidence 777777777665
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.30 E-value=0.5 Score=48.31 Aligned_cols=174 Identities=14% Similarity=0.074 Sum_probs=86.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhh
Q 004244 540 LINAYCTEGDIPQALRLHDEMIQKG---FLPDVVTYSVLINGLNK---QARTMEAKKLLLKLFYDESVPSDVIYNTLIEN 613 (766)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~ 613 (766)
++-+|....+++.-+++.+.+...- +......-..++-++.+ .|+.++|++++..++.....++..++..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334555556666666665555430 11111111223334444 56666666666664444344444444443321
Q ss_pred hchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh----HHHHHHH---HH-HHHcCC
Q 004244 614 CTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNV----QKAYDLY---KK-MVRSGF 685 (766)
Q Consensus 614 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~---~~-m~~~~~ 685 (766)
+-..- +-..+......++|+..|.+.-+. .||..+--.++..+...|.- .+..++- .. +.++|.
T Consensus 227 yKD~~------~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 227 YKDLF------LESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHH------HHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 11000 001111233478888888888763 35443322233333334432 2223322 12 223343
Q ss_pred C-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 004244 686 V-P--HTVTIIVLVKALHTAGMNEELSQVIENILRSCRL 721 (766)
Q Consensus 686 ~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 721 (766)
. + |--.+..++.+..-.|+.++|.+.++++.+..++
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 2 2 2344457888999999999999999999988633
No 222
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.28 E-value=1.5 Score=44.38 Aligned_cols=80 Identities=23% Similarity=0.231 Sum_probs=49.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004244 505 LIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQAR 584 (766)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~ 584 (766)
-+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++... + -++.-|-.++..+.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCC
Confidence 3444555666666666655542 45666677777777777777665554322 1 133666667777777777
Q ss_pred HHHHHHHHHH
Q 004244 585 TMEAKKLLLK 594 (766)
Q Consensus 585 ~~~A~~l~~~ 594 (766)
..+|..++.+
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 7777766655
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.098 Score=50.95 Aligned_cols=163 Identities=11% Similarity=0.036 Sum_probs=114.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHH--
Q 004244 580 NKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVY-- 657 (766)
Q Consensus 580 ~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-- 657 (766)
...|+..+|...++++++. .+.|...+.-.- ++|.-.|+.+.-...++++... ..||...|
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh---------------~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sY 176 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSH---------------DAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSY 176 (491)
T ss_pred hccccccHHHHHHHHHHHh-Cchhhhhhhhhh---------------hHHHhccchhhhhhHHHHhccc-cCCCCcHHHH
Confidence 4578888888888888875 444555544444 7888899999888888888754 22333222
Q ss_pred --HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---hHHHHHHHHH
Q 004244 658 --DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLS---DAELAKVLVE 732 (766)
Q Consensus 658 --~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~ 732 (766)
..+.-++...|-+++|.+.-++..+-+ +-|.-...++...+-..|+..++.++.++--..=-.. -...|.+.+-
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al 255 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL 255 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH
Confidence 344556678999999999988877432 2344555577788888899999999888754331011 1334667777
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCCC
Q 004244 733 INHKEGNMDAVLNVLTEMAKDGLLPNSG 760 (766)
Q Consensus 733 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 760 (766)
.+.+.+.++.|+++|++=.-+...++.+
T Consensus 256 ~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 256 FHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhhcccchhHHHHHHHHHHHHHhhccch
Confidence 8888899999999998876666666655
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.08 E-value=0.028 Score=57.93 Aligned_cols=99 Identities=9% Similarity=-0.029 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT----VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAK 728 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 728 (766)
+...|+.++.+|.+.|++++|+..|++.++ +.|+. .+|..++.+|...|+.++|+..++++++.+ ++ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 688899999999999999999999999985 46775 358899999999999999999999999974 12 121
Q ss_pred HHH--HHHhcCCChhHHHHHHHHHHHCCCCC
Q 004244 729 VLV--EINHKEGNMDAVLNVLTEMAKDGLLP 757 (766)
Q Consensus 729 ~l~--~~~~~~g~~~~A~~~~~~m~~~~~~~ 757 (766)
.+. ..+..-.+.++..++++.+.+-|...
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 111 11122334467778888888877643
No 225
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.04 E-value=0.3 Score=42.99 Aligned_cols=116 Identities=15% Similarity=0.080 Sum_probs=79.0
Q ss_pred HHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004244 623 AALLKGFCMKGLMNEADRVFELMLQRNHMPNE-AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHT 701 (766)
Q Consensus 623 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 701 (766)
..++..-.+.++.+++..++..+.- +.|.. ..-..-+..+...|+|.+|+.+++++.+. .|.......|+..|..
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHH
Confidence 3444566678899999999999987 45632 22233455678999999999999998754 4666666667766666
Q ss_pred cCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHH
Q 004244 702 AGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLN 745 (766)
Q Consensus 702 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 745 (766)
...-..-..+.+++++.+..++.. .|+..+........|..
T Consensus 90 ~~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 90 ALGDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HcCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 666677777888888887444433 35555555555444443
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=0.11 Score=49.80 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=72.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CChHHHHHHH
Q 004244 656 VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH---TVTIIVLVKALHTAGMNEELSQVIENILRSCR--LSDAELAKVL 730 (766)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l 730 (766)
.|+.-+. +.+.|++.+|...|...++.. +-+ ...+..|+.+++..|++++|..+|..+.+..+ +.-++.+..|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4665554 457788889988888888642 211 13455688888899999999998888888742 2235777888
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCC
Q 004244 731 VEINHKEGNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 731 ~~~~~~~g~~~~A~~~~~~m~~~~~~ 756 (766)
+.+..+.|+.++|..+|+++.+.-..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 88888999999999888888776543
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.00 E-value=0.47 Score=51.23 Aligned_cols=184 Identities=16% Similarity=0.132 Sum_probs=115.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhh-hh---
Q 004244 555 RLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKG-FC--- 630 (766)
Q Consensus 555 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~-~~--- 630 (766)
-+|+-++.. +||. ...++....-.|+-+.+++++.+..+.+..-.+..-..++.. ...+.. +.
T Consensus 178 G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y---------~~~~~~~~~~~~ 244 (468)
T PF10300_consen 178 GLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWY---------HLVVPSFLGIDG 244 (468)
T ss_pred HHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHH---------HHHHHHHcCCcc
Confidence 345555543 3333 233455555667777777777776553222222221122110 000011 11
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhcCChH
Q 004244 631 MKGLMNEADRVFELMLQRNHMPNEAVY-DIIIHGHSKVGNVQKAYDLYKKMVRS--GF-VPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-~p~~~~~~~l~~~~~~~g~~~ 706 (766)
...+.+.|.++++.+.+. -|+...| ..-++.+...|+.++|++.++++... .. +.....+.-++..+.-.++++
T Consensus 245 ~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred cCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 366889999999999985 3665555 34456677899999999999987631 11 122355567788889999999
Q ss_pred HHHHHHHHHHHcCCCChH-HHHHHHHHHHhcCCCh-------hHHHHHHHHHHHCC
Q 004244 707 ELSQVIENILRSCRLSDA-ELAKVLVEINHKEGNM-------DAVLNVLTEMAKDG 754 (766)
Q Consensus 707 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~-------~~A~~~~~~m~~~~ 754 (766)
+|...+.++.+.+ .... ..+...+-++...|+. ++|.+++.+.....
T Consensus 323 ~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 323 EAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999875 3333 3344556778888988 89999888765543
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.97 E-value=0.11 Score=53.88 Aligned_cols=68 Identities=10% Similarity=0.139 Sum_probs=49.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHH
Q 004244 658 DIIIHGHSKVGNVQKAYDLYKKMVRSGFVP-HT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAEL 726 (766)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 726 (766)
..+..++.+.|+.+||++.+++|.+.. ++ |. .....|+.++...+.+.++..++.+--+...|..+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence 457777778899999999999987542 22 22 4556788899999999999988888654444454444
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.87 E-value=0.076 Score=54.86 Aligned_cols=61 Identities=26% Similarity=0.248 Sum_probs=52.1
Q ss_pred hHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 004244 621 NVAALLKGFCMKGLMNEADRVFELMLQRNHMPNE----AVYDIIIHGHSKVGNVQKAYDLYKKMVRS 683 (766)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 683 (766)
....+-.+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|++.++++++.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566778899999999999999999984 4643 35889999999999999999999999864
No 230
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.86 E-value=0.38 Score=47.59 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=23.0
Q ss_pred HHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004244 474 FSRSQELDKAFDTKREMVEKG--VLPDTITYSSLIHGLCEQRRITEACE 520 (766)
Q Consensus 474 ~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~ 520 (766)
+....+.++|+..|.+-..+- ...-..++..+..+.+..|.+++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344556666666666554430 01112344555555555555555443
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.83 E-value=1.5 Score=44.89 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=47.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004244 470 IISGFSRSQELDKAFDTKREMVEKG---VLPDTITYSSLIHGLCE---QRRITEACELFQEMLSRGMSPDEFTYTTLINA 543 (766)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 543 (766)
++-.|....+++..+++.+.+.... +.-....-....-++.+ .|+.++|.+++..+....-.+++.+|..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3344666666666666666665431 11111112223334444 56667777766664444445666666655555
Q ss_pred HHh---------cCChHHHHHHHHHHHHC
Q 004244 544 YCT---------EGDIPQALRLHDEMIQK 563 (766)
Q Consensus 544 ~~~---------~g~~~~A~~~~~~~~~~ 563 (766)
|.. ....++|+..+.+.-+.
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 421 11255666666655543
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.82 E-value=0.46 Score=39.67 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=72.5
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhc
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT---VTIIVLVKALHTA 702 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~ 702 (766)
-+....|+++.|++.|.+.+.. .| .+..||.-..++.-+|+.++|++-++++++..-.... ..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3567889999999999999884 34 7889999999999999999999999998864322222 2233334557788
Q ss_pred CChHHHHHHHHHHHHcCC
Q 004244 703 GMNEELSQVIENILRSCR 720 (766)
Q Consensus 703 g~~~~A~~~~~~~~~~~~ 720 (766)
|+.+.|..-|+.+.+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 999999999999988873
No 233
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=4.2 Score=44.68 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=58.7
Q ss_pred HCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH---HHHHHHHHHHHHC
Q 004244 317 RKGLVPDEVTYN-----TLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNL---NRAMEFFDQMHVR 388 (766)
Q Consensus 317 ~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~ 388 (766)
..|++.+..-|. .+|+-+...+.+..|+++-..+...-.. +..+|.....-+.+..+. +-+..+=+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 346665555443 3466677778888888877665432111 256666677666665322 2222222222221
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 389 ELRPNEKTYTTLINGFSQHGFLDEAYRLLNE 419 (766)
Q Consensus 389 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 419 (766)
. ....+|..+.......|+.+-|..+++.
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2 3556777777777888888888887764
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=95.71 E-value=0.3 Score=50.67 Aligned_cols=120 Identities=10% Similarity=0.062 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004244 634 LMNEADRVFELML-QRNHMP-NEAVYDIIIHGHSKV---------GNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTA 702 (766)
Q Consensus 634 ~~~~A~~~~~~~~-~~~~~p-~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 702 (766)
..+.|..+|.+.. ...++| ....|..+..++... ....+|.++.+++++.+ +-|......++.++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888999988 223556 366666666665422 33457788888888654 45667777788888888
Q ss_pred CChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 703 GMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 703 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
|+.+.|...|+++...+ |+.+..|...+....-.|+.++|.+.+++..+..+
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 89999999999999998 77788888899999999999999999998665543
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.70 E-value=2 Score=40.99 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=43.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004244 369 MCKSGNLNRAMEFFDQMHVREL--RPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHC 440 (766)
Q Consensus 369 ~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~ 440 (766)
-.+.|++++|.+.|+.+..+.+ +-...+.-.++-++.+.+++++|....++..+.-......-|...|.+++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 4466777777777777776522 11244455566667777777777777777766533333334444455544
No 236
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.63 E-value=5.3 Score=46.37 Aligned_cols=79 Identities=16% Similarity=0.083 Sum_probs=46.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEA--VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGM 704 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 704 (766)
.+|..+|+|.+|+.+..++... -+.. +-..|+.-+..+++.-+|-++..+... .|. ..+..+++...
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhH
Confidence 5666667777776666655431 1211 224566667777777777777776542 222 23445667777
Q ss_pred hHHHHHHHHHHH
Q 004244 705 NEELSQVIENIL 716 (766)
Q Consensus 705 ~~~A~~~~~~~~ 716 (766)
+++|.......-
T Consensus 1042 ~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1042 WEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhcc
Confidence 777777665554
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.60 E-value=0.46 Score=51.30 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=100.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCcHHhHH
Q 004244 539 TLINAYCTEGDIPQALRLHDEMIQKG-FLPD-----VVTYSVLINGLN----KQARTMEAKKLLLKLFYDESVPSDVIYN 608 (766)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~-----~~~~~~li~~~~----~~g~~~~A~~l~~~~~~~~~~p~~~~~~ 608 (766)
.+++...-.|+-+.+++.+.+..+.+ +.-. ...|...+..++ .....+.|.++++.+.. .-|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHH
Confidence 34444444556666666555544321 1110 112333333222 35677888999998887 467877776
Q ss_pred HHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhC--CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 004244 609 TLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQR--NHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGF 685 (766)
Q Consensus 609 ~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 685 (766)
..-+ ..+...|++++|++.|++.... ..+. ....+--++.++.-.++|++|.+.|.++.+..
T Consensus 271 ~~~g--------------R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s- 335 (468)
T PF10300_consen 271 FFEG--------------RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES- 335 (468)
T ss_pred HHHH--------------HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-
Confidence 6654 6778899999999999976631 1111 34455667888889999999999999998643
Q ss_pred CCCHHHHHHH-HHHHHhcCCh-------HHHHHHHHHHHH
Q 004244 686 VPHTVTIIVL-VKALHTAGMN-------EELSQVIENILR 717 (766)
Q Consensus 686 ~p~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~~~ 717 (766)
.-....|.-+ +.++...|+. ++|..++.++-.
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2233444433 3334466777 888888887543
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.57 E-value=0.24 Score=41.32 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=76.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHhcC
Q 004244 661 IHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSD---AELAKVLVEINHKE 737 (766)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 737 (766)
.-++...|+.+.|++.|.+.+.. .+.....|+.-..++.-+|+.++|..-++++++..-+.. -..|..-+..|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34577899999999999999854 234568899999999999999999999999999842333 23466677888899
Q ss_pred CChhHHHHHHHHHHHCCC
Q 004244 738 GNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 738 g~~~~A~~~~~~m~~~~~ 755 (766)
|+.+.|..-|+...+.|-
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 999999999988877764
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.54 E-value=0.84 Score=48.69 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=38.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHH
Q 004244 153 VKSYSHLNMIDKAVNIVNLAKVHGFM-----------PGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYT 221 (766)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~-----------~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 221 (766)
+..|..+|.+++|.++--. |+. .+.-.++..=.+|.+..+..| -+-..-+++|.+.|-.|+...
T Consensus 563 m~q~Ieag~f~ea~~iacl----gVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~-L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 563 MYQYIERGLFKEAYQIACL----GVTDTDWRELAMEALEALDFETARKAYIRVRDLRY-LELISELEERKKRGETPNDLL 637 (1081)
T ss_pred chhhhhccchhhhhccccc----ceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHH-HHHHHHHHHHHhcCCCchHHH
Confidence 4566777777777654321 111 122223333344444443333 222333445555555455432
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH
Q 004244 222 YNVLIRGFCGVGDLEMGLRFFSE 244 (766)
Q Consensus 222 ~~~li~~~~~~g~~~~A~~~~~~ 244 (766)
+...+.-.|++.+|-++|.+
T Consensus 638 ---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 638 ---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ---HHHHHHhhhhHHHHHHHHHH
Confidence 23334445555555555543
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.51 E-value=0.079 Score=47.10 Aligned_cols=69 Identities=29% Similarity=0.354 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 004244 502 YSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQ-----KGFLPDVVT 571 (766)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 571 (766)
...++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666666666666666666654 55566666666666666666666666665542 255555544
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.49 E-value=0.038 Score=37.07 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004244 691 TIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLV 731 (766)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 731 (766)
++..++..+...|+.++|++.++++++.. |.+...+..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 45667777777777777777777777776 55566665554
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=2.4 Score=39.92 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 004244 536 TYTTLINAYCTEGDIPQALRLHDE 559 (766)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~ 559 (766)
.|+.....|...|..+.|-..+++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHH
Confidence 344444445555554444444433
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.39 E-value=0.44 Score=45.81 Aligned_cols=96 Identities=15% Similarity=0.265 Sum_probs=76.4
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhcC
Q 004244 628 GFCMKGLMNEADRVFELMLQRNHMP--NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS-GFVPH-TVTIIVLVKALHTAG 703 (766)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~~g 703 (766)
.+.+.|++.+|...|...++....- ....+..|+.++...|++++|...|..+.+. +-.|- +..+..|+......|
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 4567899999999999999764221 2445566999999999999999999999853 22222 377888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCh
Q 004244 704 MNEELSQVIENILRSCRLSD 723 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~~~~~~ 723 (766)
+.++|...++++.+..|..+
T Consensus 230 ~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 230 NTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred CHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999974333
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.48 Score=46.39 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=90.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCH
Q 004244 510 CEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDV----VTYSVLINGLNKQART 585 (766)
Q Consensus 510 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~li~~~~~~g~~ 585 (766)
...|+..+|...++++++. .|.|...++-.=.+|...|+.+.-...+++.... ..+|. ..-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4467777777777777765 3666777777777777788877777777777654 23333 2333444555677888
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHH
Q 004244 586 MEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP----NEAVYDIII 661 (766)
Q Consensus 586 ~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~ 661 (766)
++|.+.-++..+- .+-|.-.-.+.. +.+...|+..++.++..+-... .+. -...|--..
T Consensus 192 ~dAEk~A~ralqi-N~~D~Wa~Ha~a---------------HVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 192 DDAEKQADRALQI-NRFDCWASHAKA---------------HVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTA 254 (491)
T ss_pred hhHHHHHHhhccC-CCcchHHHHHHH---------------HHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHH
Confidence 8888887777663 122332333333 5666777888777765544321 110 011222233
Q ss_pred HHHhccCChHHHHHHHHHHH
Q 004244 662 HGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~ 681 (766)
-.+...+.++.|+++|++=+
T Consensus 255 l~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhcccchhHHHHHHHHHH
Confidence 34556677888888877644
No 245
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=5.7 Score=43.71 Aligned_cols=344 Identities=12% Similarity=0.108 Sum_probs=173.4
Q ss_pred hhCCCCCCHHHHHH-----HHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh--hHHHH-HHHHHhh
Q 004244 211 GKSRVSPNVYTYNV-----LIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRI--DDAFK-LLRDMGL 282 (766)
Q Consensus 211 ~~~g~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~-l~~~m~~ 282 (766)
..-|++.+..-|.. +|+-+...+.+..|.++-..+...-.. +...|.....-+.+..+. +++.+ +-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34577777766655 455666778888888887777543211 145566666666665322 22333 3333332
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004244 283 KGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLV----PDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPN 358 (766)
Q Consensus 283 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 358 (766)
. . -+.++|..+..-....|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-++... .+
T Consensus 503 ~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~ 577 (829)
T KOG2280|consen 503 K-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LN 577 (829)
T ss_pred c-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HH
Confidence 2 2 24456777777666888888888877643322211 01111223333444455555555554444432 01
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH-----HHCCCCCCHHHHH
Q 004244 359 VVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEM-----TKNGFMPSIVTYN 433 (766)
Q Consensus 359 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m-----~~~g~~~~~~~~~ 433 (766)
...+.. ...+.-.|..+|.+..++. |. ..+-+.|-...+...+-.+.-+- ...|..|+. .
T Consensus 578 ~s~l~~------~l~~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k 642 (829)
T KOG2280|consen 578 RSSLFM------TLRNQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---K 642 (829)
T ss_pred HHHHHH------HHHhchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---H
Confidence 111111 1123344555555554431 11 11122222222222221111111 012222332 2
Q ss_pred HHHHHHHhcCCHHHH----------HHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004244 434 ALIKGHCTGGRVEDA----------VGVLHGMAR-KGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITY 502 (766)
Q Consensus 434 ~ll~~~~~~g~~~~A----------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 502 (766)
...+.+.+.....-. ..+.+.+.. .|..-...+.+--+.-+..-|+..+|.++-.+.. .||...|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 223334433331111 111122211 1222222334444555666777777777665543 3677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 503 SSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQ 582 (766)
Q Consensus 503 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 582 (766)
-.-+.++...+++++-+++-+.+. .+.-|.-...+|.+.|+.++|.+++.+.... . -.+.+|.+.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~ 783 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRV 783 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHh
Confidence 777888888888887766655442 2445667778888888888888887654321 1 456677788
Q ss_pred CCHHHHHHHHHH
Q 004244 583 ARTMEAKKLLLK 594 (766)
Q Consensus 583 g~~~~A~~l~~~ 594 (766)
|++.+|.++--+
T Consensus 784 ~~~~eAad~A~~ 795 (829)
T KOG2280|consen 784 GDVKEAADLAAE 795 (829)
T ss_pred ccHHHHHHHHHH
Confidence 888887766443
No 246
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=6.3 Score=43.99 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 004244 221 TYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANV--VTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIING 298 (766)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 298 (766)
+...-+..+++...++.|..+-+.- +..++. .......+.+.+.|++++|...+-+-... ++|. -+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 3445677777777777777665443 222221 22333445566789999998887665432 2332 34666
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 004244 299 LCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRA 378 (766)
Q Consensus 299 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 378 (766)
|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.+..+... .|.- ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 77777888888889999998875 55566778999999999988777666544 2211 11234456666677777777
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 379 MEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEM 420 (766)
Q Consensus 379 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 420 (766)
.-+-.+... +...... .+-..+++++|++++..+
T Consensus 483 ~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 766555432 2222233 344567888998888765
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.28 E-value=2.9 Score=40.02 Aligned_cols=200 Identities=18% Similarity=0.084 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 464 VVSYSTIISGFSRSQELDKAFDTKREMVEK-GVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLIN 542 (766)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 542 (766)
...+......+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344444555555555555555555554431 112233444444445555555555555555555432222 111111222
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhh
Q 004244 543 -AYCTEGDIPQALRLHDEMIQKGF--LPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEF 619 (766)
Q Consensus 543 -~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 619 (766)
.+...|+++.|...+.+...... ......+......+...++.++|...+.+............+..+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------- 209 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLG-------- 209 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhh--------
Confidence 45555566666665555543210 0122223333333444555555555555555431110122222222
Q ss_pred hhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 620 QNVAALLKGFCMKGLMNEADRVFELMLQRNHMPN-EAVYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
..+...++.+.|...+...... .|+ ...+..+...+...+..+++...+.+..
T Consensus 210 -------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 210 -------LLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred -------HHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555542 122 2233333333334444555555555554
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=2.6 Score=39.62 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=29.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004244 657 YDIIIHGHSKVGNVQKAYDLYKKMVRSGF---VPHTVTIIVLVKALHTAGMNEELSQVIE 713 (766)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 713 (766)
|.+.+-.|....++..|...++.--+-+- .-+..+...|+.+ +..|+.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHc
Confidence 44444555566677777777766332111 1122444555554 35577776665544
No 249
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.21 E-value=5.5 Score=42.82 Aligned_cols=191 Identities=8% Similarity=0.041 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 462 PDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLI 541 (766)
Q Consensus 462 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 541 (766)
++..+|..-++...+.|+.+.+.-+|++..-- +..=...|--.+.-....|+.+-|..++....+--++..+. ...+-
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~-i~L~~ 372 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI-IHLLE 372 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH-HHHHH
Confidence 34567888888888999999999888877542 11122334444555555699988888888776654332222 22222
Q ss_pred HHH-HhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCcHHhHHHHhhhhch
Q 004244 542 NAY-CTEGDIPQALRLHDEMIQKGFLPDVV-TYSVLINGLNKQARTMEAK---KLLLKLFYDESVPSDVIYNTLIENCTN 616 (766)
Q Consensus 542 ~~~-~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~---~l~~~~~~~~~~p~~~~~~~ll~~~~~ 616 (766)
..+ -..|+++.|..+++..... . |+.+ .-..-+....+.|+.+.+. +++........ +......+.-...
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~- 447 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFA- 447 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHH-
Confidence 223 3568999999999999876 3 5443 3333455567788888887 44444433211 1111111110000
Q ss_pred hhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 004244 617 IEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGN 669 (766)
Q Consensus 617 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 669 (766)
. -.+.-.++.+.|..++.++.+. .+++...|..+++.....+.
T Consensus 448 -------r--~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 448 -------R--LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred -------H--HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 0 2244568899999999999885 44577778888877766553
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.20 E-value=0.98 Score=39.68 Aligned_cols=125 Identities=10% Similarity=0.112 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 004244 150 DLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGF 229 (766)
Q Consensus 150 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 229 (766)
..+|..+...+.+.....+++.+...|. .+....|.++..+++.++ ....+.++. ..+.+....+++.|
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~----~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP----QKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH----HHHHHHHHh------ccccCCHHHHHHHH
Confidence 4567777778889999999998887763 677788899999988762 455555552 13445555677888
Q ss_pred HhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc-CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 004244 230 CGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKL-GRIDDAFKLLRDMGLKGIEPNLISYNVIINGLC 300 (766)
Q Consensus 230 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 300 (766)
.+.+.++++.-++..+.. |...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 888888888888877643 33333444444 7778887777652 25567777776654
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.14 E-value=3.2 Score=39.72 Aligned_cols=52 Identities=15% Similarity=0.065 Sum_probs=23.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHhcCCChhHHHHHHH
Q 004244 696 VKALHTAGMNEELSQVIENILRSCRLSD---AELAKVLVEINHKEGNMDAVLNVLT 748 (766)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 748 (766)
++-|.+.|.+..|+.-++.+++.- +.. ......+.++|.+.|-.++|.+.-+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENY-PDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 344445555555555555555441 221 2233344455555555555544433
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.18 Score=50.95 Aligned_cols=94 Identities=13% Similarity=0.006 Sum_probs=73.7
Q ss_pred HHHHhccCChHHHHHHHHHHHH-----cCCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHH
Q 004244 661 IHGHSKVGNVQKAYDLYKKMVR-----SGFVP---------HTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAEL 726 (766)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~m~~-----~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 726 (766)
+..|.+.|++..|...|++++. .+..+ -..++..++.++.+.+++.+|+..-++++..+ +++...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 4456677777777777766542 11111 12456778889999999999999999999998 677888
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 727 AKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
.++-+.++...|+++.|...|+++.+...
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999987643
No 253
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.00 E-value=0.029 Score=35.03 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=26.8
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHhcCCChhHHH
Q 004244 712 IENILRSCRLSDAELAKVLVEINHKEGNMDAVL 744 (766)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 744 (766)
++++++.+ |.+..+|..|+..|...|++++|.
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56778877 778888889999999999998885
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.84 E-value=0.46 Score=41.01 Aligned_cols=92 Identities=10% Similarity=0.028 Sum_probs=50.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHH--HHHHh
Q 004244 661 IHGHSKVGNVQKAYDLYKKMVRSGFVPH---TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVL--VEINH 735 (766)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~ 735 (766)
+....+.|++++|++.|+.+... ++-. ...-..++.++.+.|++++|+..+++.++..|......|... +-++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34445667777777777766643 1111 134445666777777777777777777776544332222222 22222
Q ss_pred cCCC---------------hhHHHHHHHHHHHC
Q 004244 736 KEGN---------------MDAVLNVLTEMAKD 753 (766)
Q Consensus 736 ~~g~---------------~~~A~~~~~~m~~~ 753 (766)
++.. ..+|..-|++++..
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 3322 56677777766654
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=3.1 Score=40.59 Aligned_cols=120 Identities=15% Similarity=0.143 Sum_probs=51.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 004244 335 CKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAY 414 (766)
Q Consensus 335 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 414 (766)
...|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+....-.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34455555555555554432 11233444455555555555555555555543311111111112223333333333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004244 415 RLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMAR 457 (766)
Q Consensus 415 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 457 (766)
.+-.+.... +.|...-..+...+...|+.++|.+.+-.+.+
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333322 22444444455555555555555555444443
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=4.8 Score=39.32 Aligned_cols=145 Identities=13% Similarity=0.111 Sum_probs=89.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 004244 225 LIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGR 304 (766)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 304 (766)
-.......|+..+|..+|+...... +-+...--.++.+|...|+.++|..++..++..--.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3445678899999999999888764 234566677888888999999999999888654211112222223444555555
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcC
Q 004244 305 LKETKGILNEISRKGLVP-DEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLS-PNVVTYTSLINSMCKSG 373 (766)
Q Consensus 305 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g 373 (766)
..+...+-.+.-.. | |...-..+...+...|+.++|.+.+-.+++.... -|...-..++..+.-.|
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 55555555554442 4 5555556667777777777777766666553211 24445555555555555
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.63 E-value=2.4 Score=44.45 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=45.6
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHM-PNEAVYDIIIHGHSKVGNVQKAYDLYKKMVR 682 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 682 (766)
.+..+.|+.++|++.+++|.+.... .+..+...|+.++...+.+.++..++.+--+
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 6778999999999999999864322 1344667899999999999999999998653
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.58 E-value=12 Score=43.68 Aligned_cols=128 Identities=9% Similarity=0.119 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-CCC--CCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHH--HHHH
Q 004244 151 LVVKSYSHLNMIDKAVNIVNLAKV-HGF--MPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYT--YNVL 225 (766)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~-~g~--~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~l 225 (766)
.-++-+...+++.+|+.+.+.-+- .++ .-+...|-.-+.++.+.-. .++-...++..+....+.-+.+. +.+-
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in--~~~~l~lfl~~lk~eDvtk~~y~~~~~s~ 759 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQIN--RVNHLELFLTELKEEDVTKTMYSSTSGSG 759 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCC--cHHHHHHHHhhcccchhhhhhcccccccc
Confidence 346777888889888777665431 121 1123333333445554431 12444444444443221111110 0000
Q ss_pred HHHHHhc----CChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC--ChhHHHHHHHHHhh
Q 004244 226 IRGFCGV----GDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLG--RIDDAFKLLRDMGL 282 (766)
Q Consensus 226 i~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~ 282 (766)
...|... ..++...+.......+. .|+ .-...+|..|.+.+ .+++|++...+...
T Consensus 760 k~~~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 760 KQVYMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred ceeEEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 0111111 12222333333333332 344 44556777787777 67777777766654
No 259
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=4.5 Score=38.53 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004244 363 TSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMT 421 (766)
Q Consensus 363 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 421 (766)
+.++..+.-.|.+.-....+++.++...+.+......|.+.-.+.|+.+.|...|++..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34444444444555555555555554444444445555555555555555555555444
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.44 E-value=6 Score=39.55 Aligned_cols=101 Identities=11% Similarity=0.009 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 500 ITYSSLIHGLCEQRRIT---EACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLI 576 (766)
Q Consensus 500 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li 576 (766)
.+...++.+|...+..+ +|..+++.+.... +-.+.++..-+..+.+.++.+++.+.+.+|+.. +.-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 35667777777766644 4555666665442 222444545566666688888888999888875 221223333333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhCCCCCc
Q 004244 577 NGL---NKQARTMEAKKLLLKLFYDESVPS 603 (766)
Q Consensus 577 ~~~---~~~g~~~~A~~l~~~~~~~~~~p~ 603 (766)
..+ .. .....|...+..++...+.|.
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence 333 33 233456666666655434443
No 261
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.42 E-value=0.64 Score=39.70 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 004244 529 GMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK-GFLPDVVTYSVLINGL 579 (766)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~li~~~ 579 (766)
...|+..+..+++.+|+..|++..|.++.+...+. +++-+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45677777788888888888888888888777754 5666667777766543
No 262
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.41 E-value=0.57 Score=39.97 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 004244 460 LAPDVVSYSTIISGFSRSQELDKAFDTKREMVEK-GVLPDTITYSSLIH 507 (766)
Q Consensus 460 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~ 507 (766)
..|+..+..+++.+|+..|++..|+++.+...+. ++..+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455555555555555555555555555554433 44444455555554
No 263
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.37 E-value=1.5 Score=37.96 Aligned_cols=96 Identities=15% Similarity=0.012 Sum_probs=60.4
Q ss_pred HhhhhhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004244 626 LKGFCMKGLMNEADRVFELMLQRNHMPN-EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGM 704 (766)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 704 (766)
+..-...++.+++..+++.|.- +.|+ ...-..-+..+...|+|++|+.++++..+.+ +.......|...|...-.
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA--GAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC--CCchHHHHHHHHHHHhcC
Confidence 3444458999999999999986 3453 2222233455789999999999999998543 333333344444444433
Q ss_pred hHHHHHHHHHHHHcCCCChHH
Q 004244 705 NEELSQVIENILRSCRLSDAE 725 (766)
Q Consensus 705 ~~~A~~~~~~~~~~~~~~~~~ 725 (766)
-..-..+.+.+++.+.+++..
T Consensus 93 Dp~Wr~~A~~~le~~~~~~a~ 113 (153)
T TIGR02561 93 DAEWHVHADEVLARDADADAV 113 (153)
T ss_pred ChHHHHHHHHHHHhCCCHhHH
Confidence 345556666666665444433
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.23 E-value=2.6 Score=37.42 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=84.9
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCC
Q 004244 629 FCMKGLMNEADRVFELMLQRNHMPN-EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTV---TIIVLVKALHTAGM 704 (766)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~ 704 (766)
+...+..++|+.-|..+.+.|..-- ...-.-......+.|+...|+..|.++-...-.|... .-..-...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4567888999999998887665431 2222334455678899999999999987443334321 11223445667888
Q ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC
Q 004244 705 NEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLP 757 (766)
Q Consensus 705 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 757 (766)
+++...-.+-+...+.+--...-..|+-+-.+.|++.+|.++|..+..-.-.|
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 88887777766655433333344567777788999999999998877644433
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.19 E-value=2.2 Score=38.78 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=65.0
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004244 625 LLKGFCMKGLMNEADRVFELMLQRNHMPN--EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTA 702 (766)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 702 (766)
+...+..+|++++|...++.......+.+ ..+-..|.+...+.|++|+|+..++.....++.+ .....-++.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHc
Confidence 33778889999999999988775311111 1222346677888999999999988766433222 2233446788889
Q ss_pred CChHHHHHHHHHHHHcC
Q 004244 703 GMNEELSQVIENILRSC 719 (766)
Q Consensus 703 g~~~~A~~~~~~~~~~~ 719 (766)
|+.++|+..|+++++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999999886
No 266
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.17 E-value=0.39 Score=45.81 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 004244 200 VKFAEEVYNEMGKSRVSPNVYTYNVLIRGFC 230 (766)
Q Consensus 200 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 230 (766)
++..-..++.|.+.|+.-|..+|+.|++.+-
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 3444444555555555556666655555443
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.10 E-value=4.8 Score=37.19 Aligned_cols=54 Identities=13% Similarity=0.026 Sum_probs=26.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004244 509 LCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK 563 (766)
Q Consensus 509 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 563 (766)
|-..|-..-|.--|.+.+... +.-+..||-|.--+...|+++.|.+.|+...+.
T Consensus 75 YDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 334444444544444444331 222344555555555555566665555555544
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.04 E-value=3.9 Score=35.84 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=24.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc
Q 004244 224 VLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKL 267 (766)
Q Consensus 224 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 267 (766)
.++..+.+.+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34555555556666666666665554 24555666666666554
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.03 E-value=7.3 Score=38.95 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004244 536 TYTTLINAYCTEGDIP---QALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYD 598 (766)
Q Consensus 536 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 598 (766)
++..++.+|...+..+ +|..+++.+... ++-.+..+..-++.+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4556666776666543 344455555433 2222334434455555577777777777777765
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.88 E-value=13 Score=41.35 Aligned_cols=80 Identities=24% Similarity=0.238 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH----HHH-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHc
Q 004244 409 FLDEAYRLLNEMTKNGFMPSIVTYNAL----IKG-HCTGGRVEDAVGVLHGMAR-------KGLAPDVVSYSTIISGFSR 476 (766)
Q Consensus 409 ~~~~A~~l~~~m~~~g~~~~~~~~~~l----l~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~ 476 (766)
...+|.++++...+.|. ...-..+ ..+ +....+.+.|..+++.+.+ .+ +......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 35677888887777762 2222222 222 4455677777777777766 33 22233444444444
Q ss_pred c----C-CHHHHHHHHHHHHHCC
Q 004244 477 S----Q-ELDKAFDTKREMVEKG 494 (766)
Q Consensus 477 ~----g-~~~~A~~~~~~m~~~~ 494 (766)
. . +.+.|..++....+.|
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC
Confidence 2 1 4445555555555544
No 271
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.69 E-value=15 Score=41.56 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=46.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHH-HHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 004244 510 CEQRRITEACELFQEMLSRGMSPDEF-------TYTTLINA-YCTEGDIPQALRLHDEMIQK----GFLPDVVTYSVLIN 577 (766)
Q Consensus 510 ~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~l~~~-~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~li~ 577 (766)
....++++|..+..++...-..|+.. .++.|-.. ....|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566677766666665432122211 22222211 23456666666666665543 12234455555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 004244 578 GLNKQARTMEAKKLLLKLFYD 598 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~~~~~~ 598 (766)
+..-.|++++|..+..+..+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH
Confidence 666667777777666666554
No 272
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.64 E-value=1.4 Score=46.83 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=12.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 358 NVVTYTSLINSMCKSGNLNRAMEFFDQ 384 (766)
Q Consensus 358 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 384 (766)
+...|..|.+...+.|+++-|.+.|.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344444444444444444444444444
No 273
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.46 E-value=1.9 Score=37.33 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=52.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHM-P-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT--VTIIVLVKALH 700 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~ 700 (766)
....+.|++++|++.|+.+...-.- | ...+-..++.+|.+.|++++|+..+++.++. .|+. +-|.....++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHHHHHHHHH
Confidence 3456789999999999999975221 2 4556678999999999999999999999864 3332 34444444544
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.41 E-value=5.3 Score=40.07 Aligned_cols=151 Identities=13% Similarity=0.190 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCC---CCCcHHhHHHHhhhhchhhhhh
Q 004244 551 PQALRLHDEMIQKGFLPDVVTYSVLINGLNK--Q----ARTMEAKKLLLKLFYDE---SVPSDVIYNTLIENCTNIEFQN 621 (766)
Q Consensus 551 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~--~----g~~~~A~~l~~~~~~~~---~~p~~~~~~~ll~~~~~~~~~~ 621 (766)
++...+++.|.+.|+.-+..+|-+....... . ....+|..+++.|.+.. ..++...+..+++.-.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~------ 152 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTS------ 152 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhccc------
Confidence 3445566666666666665555442222211 1 23445677777776652 1345555555552100
Q ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhc-cCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004244 622 VAALLKGFCMKGLMNEADRVFELMLQRNHMPN-EAVYDIIIHGHSK-VGN--VQKAYDLYKKMVRSGFVPHTVTIIVLVK 697 (766)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 697 (766)
--...-.+.+..+|+.+.+.|+..+ ..-+.+-+-++.. ... ..++.++++.+.+.|+++....|..++-
T Consensus 153 -------~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 153 -------EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred -------ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 0001113556677777777677663 2222222222222 111 3467788888888888777766665543
Q ss_pred HHHhcCChHHHHHHHHH
Q 004244 698 ALHTAGMNEELSQVIEN 714 (766)
Q Consensus 698 ~~~~~g~~~~A~~~~~~ 714 (766)
.....+..++...-+.+
T Consensus 226 Lall~~~~~~~~~~i~e 242 (297)
T PF13170_consen 226 LALLEDPEEKIVEEIKE 242 (297)
T ss_pred HHhcCCchHHHHHHHHH
Confidence 33333333244333333
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.31 E-value=4.4 Score=34.21 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004244 503 SSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKG 564 (766)
Q Consensus 503 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 564 (766)
...++.+.+.|+-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+..++|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334445555555555555555555432 4455555555555555555555555555555554
No 276
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.31 E-value=1.9 Score=46.02 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004244 397 YTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSR 476 (766)
Q Consensus 397 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 476 (766)
.+.++.-+.+.|..+.|+.+-.+-.. -.....+.|+++.|.++.++ ..+...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 45555555555555555555432111 12223355555555554321 1244555556555556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 004244 477 SQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRL 556 (766)
Q Consensus 477 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (766)
+|+++-|.+.|.+..+ |..|+-.|...|+.+.-.++.+.....| . ++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHH
Confidence 6666555555554322 2333444555555555555555544443 1 23333333444555544444
Q ss_pred H
Q 004244 557 H 557 (766)
Q Consensus 557 ~ 557 (766)
+
T Consensus 425 L 425 (443)
T PF04053_consen 425 L 425 (443)
T ss_dssp H
T ss_pred H
Confidence 3
No 277
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=7.9 Score=36.35 Aligned_cols=73 Identities=22% Similarity=0.175 Sum_probs=35.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCH-HHHHHHHHHHHhcC
Q 004244 509 LCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMI----QKGFLPDV-VTYSVLINGLNKQA 583 (766)
Q Consensus 509 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~~p~~-~~~~~li~~~~~~g 583 (766)
+.-.+++++|.++|.+... +|--..+|+.|-..|-+.- +.|-+.|. .+|....++| +.+
T Consensus 24 fgg~~k~eeAadl~~~Aan---------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~ 87 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAAN---------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKV 87 (288)
T ss_pred cCCCcchHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hcc
Confidence 3444577888877776532 1222223333333332221 22323333 2343333333 556
Q ss_pred CHHHHHHHHHHHHh
Q 004244 584 RTMEAKKLLLKLFY 597 (766)
Q Consensus 584 ~~~~A~~l~~~~~~ 597 (766)
+.++|...++..++
T Consensus 88 ~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIE 101 (288)
T ss_pred ChHHHHHHHHHHHH
Confidence 77887777776653
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.02 E-value=5.9 Score=35.25 Aligned_cols=124 Identities=12% Similarity=0.127 Sum_probs=61.9
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCcCHH-HHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH-HHHHH--HHHHHHcCC
Q 004244 229 FCGVGDLEMGLRFFSEMEKNNCLANVV-TYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLI-SYNVI--INGLCKEGR 304 (766)
Q Consensus 229 ~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~l--i~~~~~~g~ 304 (766)
+.+.+..++|+.-|.++.+.|...=.+ .--.........|+..+|...|++.......|-+. -.-.+ .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 455666677777777776665432111 11122233445666777777777665543233222 00111 112334566
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 305 LKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVR 352 (766)
Q Consensus 305 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 352 (766)
++......+.+-..+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666555555554443333333444455555566666666666666554
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.90 E-value=18 Score=40.19 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHHCC
Q 004244 478 QELDKAFDTKREMVEKG 494 (766)
Q Consensus 478 g~~~~A~~~~~~m~~~~ 494 (766)
.+...|..++++..++|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 34555666666655555
No 280
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.80 E-value=0.78 Score=43.86 Aligned_cols=114 Identities=12% Similarity=0.172 Sum_probs=68.1
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHh-----cCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHH
Q 004244 204 EEVYNEMGKSRVSPNVYTYNVLIRGFCG-----VGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLR 278 (766)
Q Consensus 204 ~~~~~~m~~~g~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 278 (766)
.+.|.... +-.-|..+|-..+..+.. .+.++--...++.|.+.|+..|..+|+.|++.+=+-
T Consensus 54 e~~F~aa~--~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg----------- 120 (406)
T KOG3941|consen 54 EKQFEAAE--PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG----------- 120 (406)
T ss_pred hhhhhccC--cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc-----------
Confidence 34444443 224577777777766653 355666667777777777777777777777654321
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004244 279 DMGLKGIEPNLISYNVIINGLCKE-GRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGN 339 (766)
Q Consensus 279 ~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 339 (766)
...|..+ .-..|..- .+-+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 121 -----kfiP~nv----fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 121 -----KFIPQNV----FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -----ccccHHH----HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1112211 11112221 2234467788888888888888888888887777664
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.54 E-value=1.5 Score=39.87 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=69.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPN-----EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALH 700 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~ 700 (766)
.-+.+.|++++|..-|..+++.. ++. ...|..-..++.+.+.|+.|++-..+.++.+ |.. .....-+.+|-
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence 34778999999999999999852 222 2345555567789999999999998888543 432 33334466788
Q ss_pred hcCChHHHHHHHHHHHHcCCCCh
Q 004244 701 TAGMNEELSQVIENILRSCRLSD 723 (766)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~~~~~~ 723 (766)
+...+++|+.-|+++++.+|..+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchH
Confidence 88999999999999999984443
No 282
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.29 E-value=6.3 Score=33.35 Aligned_cols=83 Identities=10% Similarity=0.138 Sum_probs=44.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004244 631 MKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQ 710 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 710 (766)
.+|++...+..+-.+- .+....+..++.+.++|+-+.-.++++.+.+.+ .+++.....++.+|.+.|+..+|.+
T Consensus 68 ~C~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp G-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred hhcchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHH
Confidence 3455555544443321 134444556666667777777667766665432 5666666667777777777777777
Q ss_pred HHHHHHHcC
Q 004244 711 VIENILRSC 719 (766)
Q Consensus 711 ~~~~~~~~~ 719 (766)
++.++-+.|
T Consensus 142 ll~~ACekG 150 (161)
T PF09205_consen 142 LLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 777776666
No 283
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.11 E-value=20 Score=38.74 Aligned_cols=133 Identities=11% Similarity=0.076 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 253 NVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLI-SYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLL 331 (766)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 331 (766)
+-..|+++|..--.....+.+...++.+..+ -|-.. -|.....-=.+.|..+.+.++|++-+. |++-....|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4445555555443444445555566665533 23332 233333333455666777777776665 3433444444444
Q ss_pred HHHH-hcCChHHHHHHHHHHHHC-CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004244 332 NGYC-KEGNLHQALVLHAEMVRN-GLS-PNVVTYTSLINSMCKSGNLNRAMEFFDQMHVR 388 (766)
Q Consensus 332 ~~~~-~~g~~~~A~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 388 (766)
..++ ..|+.+.....|+..+.. |.. .....|...|..-..++++.....+++++++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 3333 355666666666665542 221 13445566666666666666666666666653
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.91 E-value=6.4 Score=39.50 Aligned_cols=129 Identities=12% Similarity=0.168 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--c----CChhhHHHHHHHHHhCCC---CcCHHHHHHHHHHHHHcCC-
Q 004244 200 VKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCG--V----GDLEMGLRFFSEMEKNNC---LANVVTYNTLIDGYCKLGR- 269 (766)
Q Consensus 200 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~- 269 (766)
+++...+++.|.+.|+.-+.++|-+-.-.... . ....+|.++|+.|.+... .++-..+.+++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34555566666666666555555442222211 1 123455666666665431 1233444444433 2222
Q ss_pred ---hhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 270 ---IDDAFKLLRDMGLKGIEPNLI-SYNVIINGLCKEGR---LKETKGILNEISRKGLVPDEVTYNTL 330 (766)
Q Consensus 270 ---~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~l 330 (766)
.++++..++.+...|...+.. -+.+-+-+++.... ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 234455555555555443322 22222222222111 33455666666666666555555443
No 285
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.88 E-value=0.48 Score=31.64 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=25.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 004244 656 VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVL 695 (766)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 695 (766)
+|..+...|.+.|++++|+++++++++. .|+. ..|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 4666777788888888888888887754 3443 444433
No 286
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.81 E-value=26 Score=39.49 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=19.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 295 IINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCK 336 (766)
Q Consensus 295 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 336 (766)
+|--+.+.|++++|.++..+.... .......+...+..|..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 344445666666666666443332 22333344445555544
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.78 E-value=11 Score=39.11 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 688 HTVTIIVLVKALHTAGMNEELSQVIENILRSCRLS---DAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
...+|..++..+.+.|.++.|...+.++...+... .+.+...-++.+...|+..+|+..+++..+...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34677788888888888888888888887754221 344455567777888888888888877777333
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.68 E-value=2 Score=39.39 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CChHHHHH---
Q 004244 655 AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT--VTIIVLVKALHTAGMNEELSQVIENILRSCR-LSDAELAK--- 728 (766)
Q Consensus 655 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~--- 728 (766)
..+..++..|++.|+.++|++.|.++.+....+.. ..+..++....-.|++..+..+++++...-- ..+...-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45677888888999999999999988876545544 5566778888888898888888888765521 12222111
Q ss_pred -HHHHHHhcCCChhHHHHHHHHH
Q 004244 729 -VLVEINHKEGNMDAVLNVLTEM 750 (766)
Q Consensus 729 -~l~~~~~~~g~~~~A~~~~~~m 750 (766)
.-+-.+...|++.+|.+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 1223345578888888877543
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.30 E-value=20 Score=37.17 Aligned_cols=64 Identities=19% Similarity=0.122 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHH
Q 004244 567 PDVVTYSVLINGLNKQARTMEAKKLLLKLFYDES-----VPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRV 641 (766)
Q Consensus 567 p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 641 (766)
....+|..++..+.+.|+++.|...+.++...+. .|.... .-. ......|+..+|+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~--e~a---------------kllw~~g~~~~Ai~~ 206 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFL--EYA---------------KLLWAQGEQEEAIQK 206 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHH--HHH---------------HHHHHcCCHHHHHHH
Confidence 3456788888888899999999998888876421 222221 112 667888899999998
Q ss_pred HHHHHh
Q 004244 642 FELMLQ 647 (766)
Q Consensus 642 ~~~~~~ 647 (766)
++...+
T Consensus 207 L~~~~~ 212 (352)
T PF02259_consen 207 LRELLK 212 (352)
T ss_pred HHHHHH
Confidence 888876
No 290
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.20 E-value=32 Score=39.21 Aligned_cols=90 Identities=18% Similarity=0.105 Sum_probs=62.6
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--------HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 004244 474 FSRSQELDKAFDTKREMVEKGVLPDTITYSSLIH--------GLCEQRRITEACELFQEMLSR----GMSPDEFTYTTLI 541 (766)
Q Consensus 474 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~l~ 541 (766)
.....++++|..+..++...-..|+...-..+.. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 4567889999999988876533444333333322 123568999999999988764 1223455677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 004244 542 NAYCTEGDIPQALRLHDEMIQK 563 (766)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~~ 563 (766)
.+..-.|++++|..+..+..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH
Confidence 8888899999999998877654
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.12 E-value=0.48 Score=29.97 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 692 IIVLVKALHTAGMNEELSQVIENIL 716 (766)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (766)
|..|+..+.+.|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455666666666666666666644
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.06 E-value=2.5 Score=38.41 Aligned_cols=92 Identities=11% Similarity=0.125 Sum_probs=72.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004244 659 IIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT----VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEIN 734 (766)
Q Consensus 659 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 734 (766)
.+...+...|++++|...++..+.. +.|. ..-..|.......|..|+|...++.....+ ........-++++
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDil 169 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHH
Confidence 3456678999999999999988732 3333 223367788899999999999998877664 2344456678999
Q ss_pred hcCCChhHHHHHHHHHHHCC
Q 004244 735 HKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 735 ~~~g~~~~A~~~~~~m~~~~ 754 (766)
...|+.++|..-|++...++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999999887
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.01 E-value=15 Score=35.19 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=76.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHH
Q 004244 469 TIISGFSRSQELDKAFDTKREMVEK---GV--LPDTITYSSLIHGLCEQRRITEACELFQEMLSR-----GMSPDEFTYT 538 (766)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~m~~~---~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~ 538 (766)
.+|..+.+.+++++....+++|... .+ .-+..+.+.+++-.....+.+.-.+.|+.-++. +-..--.|-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3444555555555555555544321 00 012233444454444444444444433332211 0011111223
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC----C-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHHh
Q 004244 539 TLINAYCTEGDIPQALRLHDEMIQKGF----L-------PDVVTYSVLINGLNKQARTMEAKKLLLKLFYDE-SVPSDVI 606 (766)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~~g~----~-------p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~p~~~~ 606 (766)
.|...|...|++.+-.+++.++...-. . .-...|..-|..|..+.+-..-..++++.+.-. --|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 455666666666666666666653210 1 112445555666666666666666666655432 2233333
Q ss_pred HHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHH
Q 004244 607 YNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFEL 644 (766)
Q Consensus 607 ~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (766)
..++..|+. ....+.|++++|..-|-+
T Consensus 230 -mGvIRECGG----------KMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 230 -MGVIRECGG----------KMHLREGEFEKAHTDFFE 256 (440)
T ss_pred -HhHHHHcCC----------ccccccchHHHHHhHHHH
Confidence 233444543 456667777777654433
No 294
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.98 E-value=30 Score=38.63 Aligned_cols=102 Identities=11% Similarity=0.091 Sum_probs=51.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 004244 331 LNGYCKEGNLHQALVLHAEMVRNGLSP---NVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQH 407 (766)
Q Consensus 331 i~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 407 (766)
++.+.+.+.+++|..+.+.... ..+ -......+|..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4555666666666665554332 222 2334555666666666666666666666543 455555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 408 GFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCT 441 (766)
Q Consensus 408 g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~ 441 (766)
++......++ .......+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 4443332221 111111344456666555554
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.78 E-value=12 Score=33.64 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=14.0
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 004244 277 LRDMGLKGIEPNLISYNVIINGLCKEGRL 305 (766)
Q Consensus 277 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 305 (766)
++.+...+++|+...|..+++.+.+.|++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33334444455555555555555555543
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.70 E-value=0.45 Score=30.11 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=22.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 656 VYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
+|..|+..|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999965
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.53 E-value=3 Score=40.94 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 004244 500 ITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQ-----KGFLPDVVTYSV 574 (766)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 574 (766)
.++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..++.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566667777777777777777777765 56677777777777777777777777777664 367777766655
Q ss_pred HHHH
Q 004244 575 LING 578 (766)
Q Consensus 575 li~~ 578 (766)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.21 E-value=0.29 Score=30.49 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHhccCChHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAY 674 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~ 674 (766)
+...|+.++..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5566666666666666666654
No 299
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.10 E-value=23 Score=35.71 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCC---------
Q 004244 672 KAYDLYKKMVRSGFVPHTVTIIVLVKALH----TAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEG--------- 738 (766)
Q Consensus 672 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------- 738 (766)
.|...+.++-..+ +......+...|. ...+.++|..+|+++.+.+. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhc
Confidence 5666666655444 2222233332222 12355666666666666652 22222333 333333
Q ss_pred ------ChhHHHHHHHHHHHCCC
Q 004244 739 ------NMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 739 ------~~~~A~~~~~~m~~~~~ 755 (766)
+...|...+......|.
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCC
Confidence 55566666665555544
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.06 E-value=0.9 Score=27.98 Aligned_cols=28 Identities=25% Similarity=0.110 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 692 IIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
|..++..+...|++++|++.++++++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4445555555555555555555555544
No 301
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.00 E-value=26 Score=36.36 Aligned_cols=132 Identities=18% Similarity=0.234 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 499 TITYSSLIHGLCEQRRITEACELFQEMLSRG-MSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLIN 577 (766)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 577 (766)
...|...+..-.+..-++.|..+|-++.+.+ +.+++..+++.+.-++ .|+...|.++|+.-..+ ++.+..--...+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4567777887778888899999999999888 5678888888888765 57888899999877765 3333344456677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCc--HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhC
Q 004244 578 GLNKQARTMEAKKLLLKLFYDESVPS--DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQR 648 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (766)
-+...++-+.|..+|+..+.. +..+ ...|..++ +--..-|++..+..+-+++.+.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi---------------~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMI---------------EYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHH---------------HHHHhhcchHHHHhHHHHHHHH
Confidence 778889999999999976654 2222 44566666 6667778888888888877763
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.80 E-value=8.6 Score=35.15 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=68.1
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhc
Q 004244 662 HGHSKVGNVQKAYDLYKKMVRSGFVPHT-----VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHK 736 (766)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 736 (766)
.-+.+.|++++|..-|.++++. +++.. ..|..-+.++.+.+.++.|+.-..++++.+ |........-+.+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3456788888888888888754 23222 445555677788888888888888888887 4445555667788888
Q ss_pred CCChhHHHHHHHHHHHCCCC
Q 004244 737 EGNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 737 ~g~~~~A~~~~~~m~~~~~~ 756 (766)
...+++|++-++++......
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 88888888888888776643
No 303
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.70 E-value=3.1 Score=40.83 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=64.1
Q ss_pred hhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHH-----cCCCCCHHHHH
Q 004244 620 QNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVR-----SGFVPHTVTII 693 (766)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 693 (766)
.....++..+...|+.+.+.+.++++.+. .| +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34456668899999999999999999985 45 889999999999999999999999998763 58888887776
Q ss_pred HHHHH
Q 004244 694 VLVKA 698 (766)
Q Consensus 694 ~l~~~ 698 (766)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 65555
No 304
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.34 E-value=16 Score=32.88 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=64.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 004244 205 EVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKG 284 (766)
Q Consensus 205 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 284 (766)
+..+.+.+.|++|+...|..+++.+.+.|++.. +..+.+.++-+|.......+-.+. +....+.++--.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 334444455666666677777777776666433 344445555555443333332221 2233344444444332
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 285 IEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVR 352 (766)
Q Consensus 285 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 352 (766)
=...+..++..+...|++-+|+++....... +......++.+..+.++...=..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113455566666677777776666554221 111123344444455554444444444333
No 305
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.10 E-value=33 Score=36.27 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=51.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--ccCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHS--KVGNVQKAYDLYKKMVR-SGFVPHTVTIIVLVKALHTAG 703 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g 703 (766)
+.+...|-..+|...+..+... .+|+...|..++..-. ..-+...+.++++.|.. .| .|+..|.....--...|
T Consensus 468 ~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g 544 (568)
T KOG2396|consen 468 DWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLG 544 (568)
T ss_pred HHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCC
Confidence 5666677777777777777764 2335555555553321 12235666666776663 34 55555655555555666
Q ss_pred ChHHHHHHHHHHHHc
Q 004244 704 MNEELSQVIENILRS 718 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~ 718 (766)
..+.+-.++.++++.
T Consensus 545 ~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 545 RPENCGQIYWRAMKT 559 (568)
T ss_pred CcccccHHHHHHHHh
Confidence 666666666665543
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.89 E-value=1.2 Score=27.54 Aligned_cols=29 Identities=21% Similarity=0.070 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 691 TIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
+|..++..+...|++++|+..++++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34445555555555555555555555544
No 307
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.81 E-value=25 Score=34.40 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=34.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 695 LVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
....|..+|.+.+|+++.++++..+ |-+...+..|...|...|+--+|.+-++++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4455566666666666666666665 4455556666666666666666655555543
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.45 E-value=6.5 Score=36.04 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 291 SYNVIINGLCKEGRLKETKGILNEISRKGLVPDE--VTYNTLLNGYCKEGNLHQALVLHAEM 350 (766)
Q Consensus 291 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~ 350 (766)
.+..+...|++.|+.++|.+.|.++.+....+.. ..+..+|......|++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444555555555555555555555544322221 23344445555555555555544443
No 309
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.51 E-value=6.8 Score=37.15 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=45.8
Q ss_pred ccCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCChHH-------HHHHHHHHHHcCCC-----ChHHHH
Q 004244 666 KVGNVQKAYDLYKKMVR----SGFVPHT--VTIIVLVKALHTAGMNEE-------LSQVIENILRSCRL-----SDAELA 727 (766)
Q Consensus 666 ~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~~~-----~~~~~~ 727 (766)
....+++|++.+.-++- .+.+|.. ..+..+++.|...|+.+. |...|+++.+.... ++..+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34445555555544331 1222222 334455566666665333 44444444433211 124445
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCCCC
Q 004244 728 KVLVEINHKEGNMDAVLNVLTEMAKDGLLP 757 (766)
Q Consensus 728 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 757 (766)
..+++...+.|+.++|.++|.++...+-..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 566666667777777777777666655433
No 310
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.31 E-value=1.8 Score=42.67 Aligned_cols=91 Identities=14% Similarity=0.036 Sum_probs=71.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
+-|.++|.+++|+..|.+... ..| +++++..-..+|.+...+..|..-.+.++... ..-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 568999999999999998877 456 88889888899999999988888777776321 11124455555666677999
Q ss_pred HHHHHHHHHHHHcCC
Q 004244 706 EELSQVIENILRSCR 720 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~ 720 (766)
.+|.+-++.+++..+
T Consensus 182 ~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 182 MEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHhHHHHHhhCc
Confidence 999999999999873
No 311
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.80 E-value=61 Score=36.70 Aligned_cols=196 Identities=14% Similarity=0.171 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCC--ChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHh--
Q 004244 322 PDEVTYNTLLNGYCKEGNLHQALVLHAEMVR-NGLSP--NVVTYTSLINSMC-KSGNLNRAMEFFDQMHVRELRPNEK-- 395 (766)
Q Consensus 322 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~~--~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~-- 395 (766)
.+...|..||. .|++.++.+.+ ..++| +..++--+...+. ...++++|...+.+.....-.++..
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 34556666665 57777777773 33444 2444555666665 5677888888888765543222221
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCH
Q 004244 396 ---TYTTLINGFSQHGFLDEAYRLLNEMTKNG----FMPSIVTYNAL-IKGHCTGGRVEDAVGVLHGMARKG---LAPDV 464 (766)
Q Consensus 396 ---~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~---~~~~~ 464 (766)
+...++..+.+.+... |...+++..+.- ..+-...+..+ +..+...++...|.+.++.+...- ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 1234455666666555 777777765531 11222233333 222223367777777777765531 23334
Q ss_pred HHHHHHHHHH--HccCCHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 004244 465 VSYSTIISGF--SRSQELDKAFDTKREMVEKGV---------LPDTITYSSLIHGLC--EQRRITEACELFQEMLS 527 (766)
Q Consensus 465 ~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 527 (766)
.++..++.+. .+.+..+++.+.++++..... .|-..+|..+++.++ ..|+++.+...++++.+
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444432 345556666666666644321 223455555555443 45666666666655543
No 312
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.50 E-value=63 Score=36.53 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=13.0
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCC
Q 004244 664 HSKVGNVQKAYDLYKKMVRSGFVPH 688 (766)
Q Consensus 664 ~~~~g~~~~A~~~~~~m~~~~~~p~ 688 (766)
+...|++++|++.++++ ++.|.
T Consensus 515 ~~~~g~~~~AL~~i~~L---~liP~ 536 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL---DLIPL 536 (613)
T ss_dssp HHHTT-HHHHHHHHHHT---T-S-S
T ss_pred HHHcCCHHHHHHHHHhC---CCCCC
Confidence 45777888887777766 45663
No 313
>PRK09687 putative lyase; Provisional
Probab=86.44 E-value=37 Score=33.85 Aligned_cols=231 Identities=8% Similarity=0.004 Sum_probs=115.9
Q ss_pred CCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh----hhHHHHHHHHHhCCCCcCH
Q 004244 179 PGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDL----EMGLRFFSEMEKNNCLANV 254 (766)
Q Consensus 179 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~ 254 (766)
+|.......+.++...|. +.+......+.. .+|...-...+.++++.|+. .++..++..+... .++.
T Consensus 35 ~d~~vR~~A~~aL~~~~~----~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG----QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred CCHHHHHHHHHHHHhcCc----chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 455555555666666552 345455555443 24555556666667776653 3566666666433 2454
Q ss_pred HHHHHHHHHHHHcCC-----hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 004244 255 VTYNTLIDGYCKLGR-----IDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNT 329 (766)
Q Consensus 255 ~~~~~li~~~~~~g~-----~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 329 (766)
.+-...+.+++..+. ..++...+...... ++...-...+.++.+.++ +++...+-.+.+. +|..+-..
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~ 178 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNW 178 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHH
Confidence 545455555544432 12333333333322 344444455566655554 4455555555542 34444444
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 004244 330 LLNGYCKEG-NLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHG 408 (766)
Q Consensus 330 li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 408 (766)
.+.++.+.+ ....+...+..+.. .+|..+....+.++.+.|+ ..|...+-+..+.+ + .....+.++...|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence 444444432 13345555555553 2455666666666666666 34555555544432 2 2234555666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 409 FLDEAYRLLNEMTKNGFMPSIVTYNALIK 437 (766)
Q Consensus 409 ~~~~A~~l~~~m~~~g~~~~~~~~~~ll~ 437 (766)
.. +|...+..+.+. .+|..+-...+.
T Consensus 250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~ 275 (280)
T PRK09687 250 DK-TLLPVLDTLLYK--FDDNEIITKAID 275 (280)
T ss_pred CH-hHHHHHHHHHhh--CCChhHHHHHHH
Confidence 54 466666665553 234444333333
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.31 E-value=8.9 Score=37.67 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004244 479 ELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLS 527 (766)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 527 (766)
+.++++.++..=+..|+-||..+++.+++.+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555444
No 315
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.12 E-value=1.6 Score=26.91 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 724 AELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 724 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
+..|..++.+|...|++++|++.+++..+..
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3578899999999999999999999988754
No 316
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.90 E-value=30 Score=32.27 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 725 ELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
++|..|++.+...|+.++|..+|+-.+.+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 44555666666666666666666555444
No 317
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.89 E-value=1.7 Score=26.74 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 725 ELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
..+..++.++...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 567889999999999999999999987654
No 318
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.85 E-value=19 Score=37.83 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=73.5
Q ss_pred hhhhhcCCHHHHHHHHHHHH---hCCC--CC---CHHHHHHHHHHHhccCChHHHHHHHHHHHH-------cCCCCCH--
Q 004244 627 KGFCMKGLMNEADRVFELML---QRNH--MP---NEAVYDIIIHGHSKVGNVQKAYDLYKKMVR-------SGFVPHT-- 689 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~---~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~-- 689 (766)
..+...|++.+|.+++...- +.|. .| .-..||.++-.+.+.|.+.-+..+|.+++. .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 55667889999988875432 1221 12 122347777777788888888888877763 4655543
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhc
Q 004244 690 --------VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHK 736 (766)
Q Consensus 690 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 736 (766)
......+-.+...|+.-.|.+.|.++...- ..++..|..|++++..
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 112233456678899999999999988763 5567889999888763
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.73 E-value=7.1 Score=40.50 Aligned_cols=129 Identities=16% Similarity=0.086 Sum_probs=85.5
Q ss_pred hhcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 004244 630 CMKGLMNEADR-VFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEEL 708 (766)
Q Consensus 630 ~~~g~~~~A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 708 (766)
...|+.-.|-+ ++..+....-.|+.... ........|.++.+...+...... +-....+..++++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 45677666654 44444444334544433 334466789999998887765521 234456778888899999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCCCCC
Q 004244 709 SQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLPNSGRS 762 (766)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 762 (766)
....+-++...+. ++++....+-.-...|-++++.-.|+++...+...+.|+.
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 9999888877533 3333333333445567889999999998888777777653
No 320
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.71 E-value=1.2e+02 Score=39.03 Aligned_cols=322 Identities=14% Similarity=0.077 Sum_probs=156.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 364 SLINSMCKSGNLNRAMEFFDQM----HVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGH 439 (766)
Q Consensus 364 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~ 439 (766)
.+..+-.++|.+.+|...+++- .+. ......|..+...|...+++|....+...-.. +...+. -|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHH
Confidence 4556667888888888888873 221 11233444555578888888877777664211 222222 33445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 004244 440 CTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSL-IHGLCEQRRITEA 518 (766)
Q Consensus 440 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A 518 (766)
...|++..|...|+.+.+.+.+ ...+++.++......|.++.++...+-.... ..+....|+.+ +.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 6778888888888888876432 3566666666666667777766655544332 12233333332 2233455666655
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH--HHHHHhc--CChHHHHHHHHHHHHC--------CCC-CCHHHHHHHHHHHHhcCCH
Q 004244 519 CELFQEMLSRGMSPDEFTYTTL--INAYCTE--GDIPQALRLHDEMIQK--------GFL-PDVVTYSVLINGLNKQART 585 (766)
Q Consensus 519 ~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~--g~~~~A~~~~~~~~~~--------g~~-p~~~~~~~li~~~~~~g~~ 585 (766)
...+. .. +..+|... .....+. .+.-.-.+..+.+.+. +.. .-...|..+++...-...-
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 55544 11 11122221 2221111 1111111122222111 010 0012233333322111111
Q ss_pred HHHHHHHHHHH-hCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHH-HhC----CCCC-CHHHHH
Q 004244 586 MEAKKLLLKLF-YDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELM-LQR----NHMP-NEAVYD 658 (766)
Q Consensus 586 ~~A~~l~~~~~-~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----~~~p-~~~~~~ 658 (766)
... +.+.... .....-+..-|...+ ..-....+..+-+--+++. ... +..- -..+|.
T Consensus 1611 ~~~-~~l~~~s~~~~s~~~sd~W~~Rl---------------~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wL 1674 (2382)
T KOG0890|consen 1611 NSI-EELKKVSYDEDSANNSDNWKNRL---------------ERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWL 1674 (2382)
T ss_pred HHH-HHhhccCccccccccchhHHHHH---------------HHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHH
Confidence 111 1110000 000011111111111 1111111122222222221 111 1111 346777
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 004244 659 IIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRL 721 (766)
Q Consensus 659 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 721 (766)
..++.....|+++.|...+-++.+.+ .| ..+...+..+...|+...|..++++.++...+
T Consensus 1675 qsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1675 QSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 88888888999999988887776554 23 44556778888999999999999999876533
No 321
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.68 E-value=65 Score=35.94 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=65.4
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 628 GFCMKGLMNEADRVFELMLQRNHMPN--EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
++..-|+.++|..+.++|.... .|- ..-...++.+|+-.|+-.-..+++.-.+.. ..-|..-....+-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3444566667777777776432 221 111224455677777766666655554422 122223333333444455666
Q ss_pred HHHHHHHHHHHHcCCCChHH--HHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 706 EELSQVIENILRSCRLSDAE--LAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
+.-..+.+-+.+.. .+.+. +...|+-++.-.|. .+|..+++-|..
T Consensus 588 ~~~~s~V~lLses~-N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESY-NPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhc-ChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 66666666555543 34333 33345555556666 788899888876
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.66 E-value=3.8 Score=40.47 Aligned_cols=90 Identities=13% Similarity=-0.007 Sum_probs=64.4
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Q 004244 661 IHGHSKVGNVQKAYDLYKKMVRSGFVP-HTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGN 739 (766)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 739 (766)
+.-|.++|++++|+..|.+.+ ...| +++++..-+.+|.+...+..|..--+.++..+ ..-...|..-+.+--..|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 345778888888888888877 3456 66777777778888888887777777777665 3446667777766667777
Q ss_pred hhHHHHHHHHHHHC
Q 004244 740 MDAVLNVLTEMAKD 753 (766)
Q Consensus 740 ~~~A~~~~~~m~~~ 753 (766)
..||.+-.+..++.
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 77777766665543
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.18 E-value=9.2 Score=37.58 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 632 KGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 632 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
.-+.++++.++..=++.|+-||..+++.+++.+.+.+++.+|..+...|+
T Consensus 113 ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 113 KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33555666666666666666666666666666666666666666655554
No 324
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.78 E-value=28 Score=30.94 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=22.0
Q ss_pred hcCChhhHHHHHHHHHhCCCCcC---HHHHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 004244 231 GVGDLEMGLRFFSEMEKNNCLAN---VVTYNTLIDGYCKLGRIDDAFKLLRDMGLK 283 (766)
Q Consensus 231 ~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 283 (766)
+.++.+++..+++.+.-. .|. ..++... .+...|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 344555555555555432 222 1222222 233455555555555555443
No 325
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.58 E-value=59 Score=34.53 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=73.5
Q ss_pred CCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCChHHHH
Q 004244 651 MPNEAVY-DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALH--TAGMNEELSQVIENILRSCRLSDAELA 727 (766)
Q Consensus 651 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~ 727 (766)
.|+..++ +.+++-+.+.|-.++|...+.++.... +|+...+..++..-. .+.+..-+..+++.++..- ..++..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f-g~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF-GADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh-CCChHHH
Confidence 3555555 667888889999999999999998542 455566666654432 3345888899999998773 2678888
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 728 KVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 728 ~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
......-...|..+.+-.++.+..+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 7777766788998888888777554
No 326
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.97 E-value=18 Score=34.31 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=75.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNE-AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGM 704 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~ 704 (766)
.-|....+++.|+..|.+.+. +.|+. ..|..=+-++.+..+|+.+.+--.+++ .+.|+. .....+..++.....
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral--ql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL--QLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH--hcChHHHHHHHHHHHHHHhhcc
Confidence 456667889999998888887 45765 455667778889999999988888877 457776 344567778888899
Q ss_pred hHHHHHHHHHHHHc----CCCChHHHHHHHHHHH
Q 004244 705 NEELSQVIENILRS----CRLSDAELAKVLVEIN 734 (766)
Q Consensus 705 ~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~ 734 (766)
+++|+..++++... .+++...+...|.++-
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 99999999998543 2334445555555543
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.63 E-value=19 Score=38.88 Aligned_cols=148 Identities=19% Similarity=0.126 Sum_probs=78.9
Q ss_pred cCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 004244 232 VGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGI 311 (766)
Q Consensus 232 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 311 (766)
.|+++.|-.++-.+.+ ..-+.+++.+-+.|-.++|+++- +|... -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 4666666555444432 22345555566666666665532 12111 11223356677777666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004244 312 LNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELR 391 (766)
Q Consensus 312 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 391 (766)
..+. .+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+....+-....+.|..
T Consensus 660 a~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 660 AVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 5543 2445567777777777777777776665432 344555566666655555554444444432
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 392 PNEKTYTTLINGFSQHGFLDEAYRLLNE 419 (766)
Q Consensus 392 ~~~~~~~~li~~~~~~g~~~~A~~l~~~ 419 (766)
| .+| -+|...|+++++.+++.+
T Consensus 725 -N-~AF----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 -N-LAF----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred -c-hHH----HHHHHcCCHHHHHHHHHh
Confidence 2 222 234556677776666544
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.23 E-value=2.8 Score=27.16 Aligned_cols=28 Identities=18% Similarity=0.289 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 725 ELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
.+++.|+..|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3456666777777777777776666543
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.60 E-value=98 Score=34.89 Aligned_cols=102 Identities=16% Similarity=0.078 Sum_probs=56.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCc---CHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 004244 226 IRGFCGVGDLEMGLRFFSEMEKNNCLA---NVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKE 302 (766)
Q Consensus 226 i~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 302 (766)
|+.+.+.+.+++|+++-+..... .| -...+...|+.+.-.|++++|-.+.-.|... +...|..-+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44566677777777666555432 22 2345667777777777887777777777542 555566555555555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 303 GRLKETKGILNEISRKGLVPDEVTYNTLLNGYCK 336 (766)
Q Consensus 303 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 336 (766)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554433222 2221112334455555555444
No 330
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.60 E-value=52 Score=31.72 Aligned_cols=281 Identities=17% Similarity=0.156 Sum_probs=146.4
Q ss_pred CCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 004244 318 KGLVPDEVTYNTLLNG-YCKEGNLHQALVLHAEMVRNGLSPNV---VTYTSLINSMCKSGNLNRAMEFFDQMHVR---EL 390 (766)
Q Consensus 318 ~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 390 (766)
.+-+||+..-|..-+. -.+..++++|+.-|+++++....... ...-.+|..+.+.|++++..+.+.++..- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3455666544432222 12455788999999988875322222 33446788888999999998888887542 11
Q ss_pred --CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--
Q 004244 391 --RPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKN-----GFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLA-- 461 (766)
Q Consensus 391 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-- 461 (766)
.-+..+.|.+++......+.+--...++.-.+. +-..=-.|-..|.+.|...|.+.+..+++.++...--.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 123455677776666666665555555443221 10111123345666777777777777787777664111
Q ss_pred --CC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHH
Q 004244 462 --PD-------VVSYSTIISGFSRSQELDKAFDTKREMVEK-GVLPDTITYSSLIHG-----LCEQRRITEACELFQEML 526 (766)
Q Consensus 462 --~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~ 526 (766)
.| ...|..=|..|....+-.+...++++.... .-.|.+..... |+- ..+.|.+++|..-|-+..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHH
Confidence 01 234555566676666666666677665543 22344444332 332 345577777654443333
Q ss_pred H----CCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004244 527 S----RGMSPDEFT---YTTLINAYCTEGDIPQALRLHDEMIQK--GFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFY 597 (766)
Q Consensus 527 ~----~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 597 (766)
+ .| .|...+ |-.|.+++.+.|-- -|+.-..+ .-.|.....+.++.+| +..+..+-.+++..-..
T Consensus 259 KNYDEsG-spRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aY-Q~NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 259 KNYDESG-SPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAY-QNNDIIEFERILKSNRS 331 (440)
T ss_pred hcccccC-CcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHH-hcccHHHHHHHHHhhhc
Confidence 2 34 333322 33444444444310 01111111 1134556667777777 34455555444443322
Q ss_pred CCCCCcHHhH
Q 004244 598 DESVPSDVIY 607 (766)
Q Consensus 598 ~~~~p~~~~~ 607 (766)
.+..|++.-
T Consensus 332 -~IM~DpFIR 340 (440)
T KOG1464|consen 332 -NIMDDPFIR 340 (440)
T ss_pred -cccccHHHH
Confidence 244444443
No 331
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.07 E-value=1e+02 Score=34.86 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=96.9
Q ss_pred HhcCChHHHHHHHHHHHHCCC-CC-----CHHHHHHHHHHH--HhcCCHHHHHHHHH--------HHHhCCCCCcHHhHH
Q 004244 545 CTEGDIPQALRLHDEMIQKGF-LP-----DVVTYSVLINGL--NKQARTMEAKKLLL--------KLFYDESVPSDVIYN 608 (766)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~~g~-~p-----~~~~~~~li~~~--~~~g~~~~A~~l~~--------~~~~~~~~p~~~~~~ 608 (766)
+-.|++..|....+++.+..- .| ....+..++.|. -..|+.+.|...|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456889999999998885411 11 123333333333 35799999999997 333333333333332
Q ss_pred HHhhhhchhhhhhHHHHHhhhhhcC--CHHH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHhccC--ChHHHHHHHH
Q 004244 609 TLIENCTNIEFQNVAALLKGFCMKG--LMNE--ADRVFELMLQR-NHMP--NEAVYDII-IHGHSKVG--NVQKAYDLYK 678 (766)
Q Consensus 609 ~ll~~~~~~~~~~~~~l~~~~~~~g--~~~~--A~~~~~~~~~~-~~~p--~~~~~~~l-~~~~~~~g--~~~~A~~~~~ 678 (766)
.+= ++..+...+ ..++ +.++++.+... .-.| +..++..+ +.++.... ...++...+.
T Consensus 452 ~LN-------------l~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~ 518 (608)
T PF10345_consen 452 ALN-------------LAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQ 518 (608)
T ss_pred HHH-------------HHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Confidence 211 001222222 2223 66666665531 1122 33344333 33333221 2235544444
Q ss_pred HHHHc---CCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CChHHHHH-----HHHHHHhcCCChhHHH
Q 004244 679 KMVRS---GFVPHT---VTIIVLVKALHTAGMNEELSQVIENILRSCR---LSDAELAK-----VLVEINHKEGNMDAVL 744 (766)
Q Consensus 679 ~m~~~---~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~-----~l~~~~~~~g~~~~A~ 744 (766)
+.++. ....+. .+++.+...+. .|+.++.......+..... ......|. .+.+.+...|+.++|.
T Consensus 519 ~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~ 597 (608)
T PF10345_consen 519 EALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAE 597 (608)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 43311 111111 22333333333 7888887777666554321 11344552 4446677899999999
Q ss_pred HHHHHHH
Q 004244 745 NVLTEMA 751 (766)
Q Consensus 745 ~~~~~m~ 751 (766)
....+..
T Consensus 598 ~~~~~~~ 604 (608)
T PF10345_consen 598 EARQQLD 604 (608)
T ss_pred HHHHHHH
Confidence 8877654
No 332
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=80.99 E-value=60 Score=32.02 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=37.3
Q ss_pred cCChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 004244 302 EGRLKETKGIL-NEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAM 379 (766)
Q Consensus 302 ~g~~~~a~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 379 (766)
...+++..... ++|++..+ |+..+...+.++....+.+.+-.++..+-.-+ ....|..|+.++|..|+.+-.+
T Consensus 268 e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHHH
Confidence 34444444443 34444444 56554444444444444444333332221111 3446788888888888877544
No 333
>PRK09687 putative lyase; Provisional
Probab=80.97 E-value=63 Score=32.25 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 498 DTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQ 562 (766)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (766)
|..+-...+.++.+.|+ ..|+..+-...+.+ + .....+.++.+.|.. +|...+..+.+
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 44444444555555554 23333333333322 1 122344444455543 35555555444
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.64 E-value=2.1 Score=26.04 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=12.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHH
Q 004244 729 VLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 729 ~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
.++.++.+.|++++|.+.++++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 444555555555555555555444
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.21 E-value=3.9 Score=25.04 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 726 LAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
+|..++..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666677777777777777666554
No 336
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=80.20 E-value=1.1e+02 Score=34.41 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 145 SSAVIDLVVKSYSHLNMIDKAVNIVNL 171 (766)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 171 (766)
++..|+ .+..+.-.|++++|..+++.
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 378888 67788888999999999854
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.13 E-value=3.8 Score=26.53 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=14.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 656 VYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
+++.+...|...|++++|.+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555556666666666666665554
No 338
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.02 E-value=62 Score=31.59 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=30.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHccCCHHHHHH
Q 004244 435 LIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSY-------STIISGFSRSQELDKAFD 485 (766)
Q Consensus 435 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~~ 485 (766)
+.+-..+.+++++|+..+.++...|...+..+. ..+...|.+.|+...-.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 344556677778888888777777776654433 334455555555544433
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.93 E-value=3.5 Score=25.26 Aligned_cols=29 Identities=24% Similarity=0.130 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 691 TIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
+|..++..+...|+.++|...++++++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45566777777777777777777777654
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.77 E-value=26 Score=37.91 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=48.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004244 370 CKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAV 449 (766)
Q Consensus 370 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 449 (766)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 45566666665554432 445566666666666666666666655433 233444444455544444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 004244 450 GVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKR 488 (766)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 488 (766)
.+-....+.|.. |.-.-+|...|+++++.+++.
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 443333333321 222233444555555555443
No 341
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.62 E-value=57 Score=30.95 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=10.2
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 004244 631 MKGLMNEADRVFELMLQR 648 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~ 648 (766)
..+++.+|+.+|+++...
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666655543
No 342
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.61 E-value=13 Score=29.49 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 517 EACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQ 562 (766)
Q Consensus 517 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (766)
++.+-+..+...++.|++....+.+++|-+.+++..|.++++....
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555666666666666666666666666666665553
No 343
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.74 E-value=4.1 Score=24.64 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=14.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
.++.++.+.|++++|...++++++..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34455555566666666666655553
No 344
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=78.31 E-value=74 Score=35.65 Aligned_cols=28 Identities=4% Similarity=0.059 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004244 219 VYTYNVLIRGFCGVGDLEMGLRFFSEMEK 247 (766)
Q Consensus 219 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 247 (766)
...|+ .+..+.-.|.++.|.++++...+
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s~ 176 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHSS 176 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhccc
Confidence 67776 56667778888888888855443
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.80 E-value=25 Score=32.53 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CChHHHHHHHHHHHhcCCChhHH
Q 004244 671 QKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCR---LSDAELAKVLVEINHKEGNMDAV 743 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 743 (766)
++|.+.|-++...+.--++.... .+..++...+.++|+.++-++++... ..++.++..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44455555554333222222222 22233334555555555555554421 22345555555555555555554
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.64 E-value=21 Score=32.99 Aligned_cols=16 Identities=13% Similarity=-0.060 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhcCCH
Q 004244 500 ITYSSLIHGLCEQRRI 515 (766)
Q Consensus 500 ~~~~~li~~~~~~g~~ 515 (766)
..+.+|+..+.+.|++
T Consensus 179 eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 179 EILKSLASIYQKLKNY 194 (203)
T ss_pred HHHHHHHHHHHHhcch
Confidence 3333333333333333
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.81 E-value=2.9 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHH
Q 004244 727 AKVLVEINHKEGNMDAVLNVLT 748 (766)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~ 748 (766)
...++..+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456666666666666666654
No 348
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.71 E-value=35 Score=27.54 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004244 517 EACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK 563 (766)
Q Consensus 517 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 563 (766)
+..+-+..+...++.|++....+.+.+|.+.+++..|.++++....+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555566666666777777777777777777777777777776644
No 349
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.68 E-value=52 Score=31.24 Aligned_cols=91 Identities=15% Similarity=0.241 Sum_probs=59.6
Q ss_pred hhhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHhccCCh-------HHHHHHHHHHHHcCCCC----CH-H
Q 004244 629 FCMKGLMNEADRVFELMLQ----RNHMPN--EAVYDIIIHGHSKVGNV-------QKAYDLYKKMVRSGFVP----HT-V 690 (766)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~-------~~A~~~~~~m~~~~~~p----~~-~ 690 (766)
+.....+++|++.|.-++- .+.+|. ...+.-+.+.|-..|+. ..|++.|.+..+..-.| +. .
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 4456677888877765542 233343 34455667777777774 45677777766443222 22 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 691 TIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
..-.++....+.|+.++|.++|.+++...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33456777789999999999999999874
No 350
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.15 E-value=19 Score=28.66 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 672 KAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 672 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
++.+-++.+....+.|++....+.+++|.+.+++.-|+.+++-+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555556677777777777777777777777777766644
No 351
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.71 E-value=2.6e+02 Score=36.38 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 690 VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
.+|...++...+.|.++.|...+-++.+.. .+.++...+..+...|+...|+.++++-..+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 789999999999999999999999888876 245566788899999999999999998876554
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.90 E-value=42 Score=26.97 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=21.8
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 004244 229 FCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLK 283 (766)
Q Consensus 229 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 283 (766)
+...|++++|..+.+.+ +.||...|-+|-.. +.|.-+++..-+.+|...
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 44455555555444433 24455555444322 334444444444444443
No 353
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.72 E-value=49 Score=28.37 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 651 MPNEAVYDIIIHGHSKVGN---VQKAYDLYKKMVRSGFVPHT--VTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 651 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
.++..+-..+.+++.++.+ ..+.+.++++..+.. .|+. .....|.-++.+.++++++.++.+..++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 4566677778888887765 467788899888622 3433 555567778899999999999999998886
No 354
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.48 E-value=1.3e+02 Score=32.28 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004244 463 DVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSR 528 (766)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 528 (766)
|....-+++..+...-...-...+..+|...| .+...+..++++|... ..++-..+++++.+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 33344444455554444444555555554443 1334444444444444 334444444444444
No 355
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.34 E-value=1.3e+02 Score=32.25 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 497 PDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLI 576 (766)
Q Consensus 497 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li 576 (766)
.|.....+++..+....+..-...+..+|+..| .+...|..++..|... ..++-..+++++.+..+ .|++.-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 355566667777777777777777777777764 3555667777777776 45566677777776532 3444445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh-CCCCCCHH
Q 004244 577 NGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ-RNHMPNEA 655 (766)
Q Consensus 577 ~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~ 655 (766)
.-|-+ ++.+.+..+|.+++.. +-|... ++.+. ..+..|+.. -..+.+....+..++.. .|..--..
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q--~~~i~-------evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~V 206 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQ--NAAIK-------EVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSV 206 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhh--hhhHH-------HHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHH
Confidence 55544 7777777777777654 222110 01110 001111111 13455555555555553 22222344
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc
Q 004244 656 VYDIIIHGHSKVGNVQKAYDLYKKMVRS 683 (766)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 683 (766)
.+.-+-.-|....+|++|++++..+++.
T Consensus 207 l~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 207 LMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 5555556666777777777777776644
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.25 E-value=24 Score=32.92 Aligned_cols=74 Identities=8% Similarity=0.012 Sum_probs=53.7
Q ss_pred HHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 004244 623 AALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS--GFVPHTVTIIVLVKA 698 (766)
Q Consensus 623 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~ 698 (766)
..-++.+.+.+.+.+|+...+.-++. +| |...-..++..||-.|+|++|..-++-.-+. ...+....|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 33456777889999999999888775 35 6667778999999999999999888876532 122333556666554
No 357
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.54 E-value=22 Score=28.69 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004244 307 ETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRN 353 (766)
Q Consensus 307 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 353 (766)
+..+-++.+....+.|++.+..+.+.+|-+.+++..|.++++.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666667777777777777777777777777777776654
No 358
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.53 E-value=90 Score=33.29 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=22.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCcCHH--HHHHHHHHHHHcCChhHHHHHHH
Q 004244 226 IRGFCGVGDLEMGLRFFSEMEKNNCLANVV--TYNTLIDGYCKLGRIDDAFKLLR 278 (766)
Q Consensus 226 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~l~~ 278 (766)
+...++.|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+..+++
T Consensus 39 L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 39 IKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 34444555554 333344445444322 11234455556677666555544
No 359
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.17 E-value=97 Score=30.33 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCChHHHHHHH
Q 004244 504 SLIHGLCEQRRITEACELFQEMLSRGMSPDEFT-------YTTLINAYCTEGDIPQALRLH 557 (766)
Q Consensus 504 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------~~~l~~~~~~~g~~~~A~~~~ 557 (766)
.+.+-..+.+++++|+..+.+++..|...+..+ ...+...|...|+...-.+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 345566777888888888888888877666543 334555566666655544433
No 360
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.16 E-value=18 Score=38.79 Aligned_cols=104 Identities=13% Similarity=-0.006 Sum_probs=75.9
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004244 630 CMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELS 709 (766)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 709 (766)
...|+...|.+.+..+.........+....|...+.+.|...+|-.++.+.+.-. ...+-++..+++++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3578999999998887753222244455667778888888899999988877543 344566777888999999999999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHh
Q 004244 710 QVIENILRSCRLSDAELAKVLVEINH 735 (766)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 735 (766)
+.++.+++.. +...++-+.|...-|
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 9999999987 555555555554444
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.24 E-value=4.8 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=12.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 004244 695 LVKALHTAGMNEELSQVIENILR 717 (766)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~ 717 (766)
++.+|...|+.+.|..++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45555555555555555555553
No 362
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.05 E-value=69 Score=28.12 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=25.0
Q ss_pred cCChhhHHHHHHHHHhCCCCcC---HHHHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 004244 232 VGDLEMGLRFFSEMEKNNCLAN---VVTYNTLIDGYCKLGRIDDAFKLLRDMGLK 283 (766)
Q Consensus 232 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 283 (766)
.++.+++..+++.|.-. .|+ ..++-.. .+...|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 55666666666666442 222 2223222 234556666666666666554
No 363
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.70 E-value=1.3e+02 Score=32.08 Aligned_cols=106 Identities=18% Similarity=0.131 Sum_probs=68.1
Q ss_pred HHhcCCHHHHHHHHHHHHh---CCC--CCc---HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh---
Q 004244 579 LNKQARTMEAKKLLLKLFY---DES--VPS---DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ--- 647 (766)
Q Consensus 579 ~~~~g~~~~A~~l~~~~~~---~~~--~p~---~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 647 (766)
+.-.|++.+|.+++...-- .|. .|. -..||.+. -.+.+.|.+..+..+|.+.++
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG---------------cIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG---------------CIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc---------------eEeeehhhHHHHHHHHHHHHHHHH
Confidence 4567999999988765421 121 111 11223333 445566677777777666653
Q ss_pred ----CCCCCCH-----------HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004244 648 ----RNHMPNE-----------AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHT 701 (766)
Q Consensus 648 ----~~~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 701 (766)
.|++|.. .+|| .+-.|...|++..|.+.|.+.... +..++..|..++.+|..
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 4555521 2343 355678999999999999998864 56788899999998873
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.96 E-value=7.9 Score=29.45 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=24.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHH
Q 004244 666 KVGNVQKAYDLYKKMVRSGFVPHT--VTIIVLVKALHTAGMNEELSQVIEN 714 (766)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 714 (766)
...+.++|+..|++.+++-..|.. .++..++.+++..|++++++.+.-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666665543222221 3344555555556666555554433
No 365
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.74 E-value=2 Score=37.83 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=31.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHH
Q 004244 225 LIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLR 278 (766)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 278 (766)
+|..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 345555566666666666666655444456666666666666665565555555
No 366
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=70.71 E-value=1.2e+02 Score=30.38 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=10.8
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 004244 632 KGLMNEADRVFELMLQRN 649 (766)
Q Consensus 632 ~g~~~~A~~~~~~~~~~~ 649 (766)
..+.++|...|.+..+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 345666666666666655
No 367
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.49 E-value=1.7e+02 Score=34.75 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=79.1
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHH
Q 004244 625 LLKGFCMKGLMNEADRVFELMLQRNHMPN----EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT----VTIIVLV 696 (766)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~ 696 (766)
.+..+...+-.+.+.++-..+++. .+|+ +.+++.+...+...|.+-+|.+.+-+ .||. .+.+.++
T Consensus 989 v~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 989 VVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHH
Confidence 347777888899999988888764 2222 45678888888899999888876544 3554 5566777
Q ss_pred HHHHhcCChHH------------HHH-HHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 004244 697 KALHTAGMNEE------------LSQ-VIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVL 747 (766)
Q Consensus 697 ~~~~~~g~~~~------------A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 747 (766)
-.++..|+++. ... +++..-+..+......|..|.-.+...++|.+|-.+.
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 78888877654 333 3444444443344556777777778889998886554
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.73 E-value=1.1e+02 Score=32.71 Aligned_cols=9 Identities=33% Similarity=0.442 Sum_probs=4.0
Q ss_pred HHcCChhHH
Q 004244 265 CKLGRIDDA 273 (766)
Q Consensus 265 ~~~g~~~~A 273 (766)
+..|+.+-+
T Consensus 10 ~~~g~~~iv 18 (413)
T PHA02875 10 ILFGELDIA 18 (413)
T ss_pred HHhCCHHHH
Confidence 344554433
No 369
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=69.65 E-value=2.9 Score=36.83 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=59.9
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004244 625 LLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGM 704 (766)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 704 (766)
+|..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++... .+.+ ..++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~yd~-----~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--NYDL-----DKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--SS-C-----THHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--ccCH-----HHHHHHHHhcch
Confidence 347777888999999999999976655578888999999999998888888887321 2222 345666677777
Q ss_pred hHHHHHHHHH
Q 004244 705 NEELSQVIEN 714 (766)
Q Consensus 705 ~~~A~~~~~~ 714 (766)
+++|..++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 7777776665
No 370
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.69 E-value=38 Score=30.71 Aligned_cols=111 Identities=12% Similarity=0.115 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh---ccCChHHHHHHHHHHHHc-----CCCCCH-HHHHHHHHHHHhcC--
Q 004244 635 MNEADRVFELMLQRNHMPNEAVYDIIIHGHS---KVGNVQKAYDLYKKMVRS-----GFVPHT-VTIIVLVKALHTAG-- 703 (766)
Q Consensus 635 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~-----~~~p~~-~~~~~l~~~~~~~g-- 703 (766)
++.|.+.++.....+ +.|...++..+.++. +..+..++.+++++.+.+ .+.|+. .++.+++.++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 456666666655432 125665555554443 333334444444443321 356775 67777777776443
Q ss_pred ---------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 704 ---------MNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 704 ---------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
.+++|..+|+++...+ |+...|..-.+... +|-++-.++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~--P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDED--PNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 2566677777777765 44556655444432 3444444444443
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.92 E-value=1.3e+02 Score=29.70 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 501 TYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQ 562 (766)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (766)
+++.....|...|.+.+|.++.++.+..+ +.+...+..|++.+...|+--.|.+-++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34455667788888888888888888775 66777788888888888887777776666643
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.53 E-value=13 Score=24.72 Aligned_cols=24 Identities=13% Similarity=0.392 Sum_probs=17.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHc
Q 004244 660 IIHGHSKVGNVQKAYDLYKKMVRS 683 (766)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~m~~~ 683 (766)
+..+|.+.|+.+.|.+++++.+..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 566777777777777777777643
No 373
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.52 E-value=1.3e+02 Score=29.60 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHH-HHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELA-KVLV 731 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 731 (766)
|+.....++..|.+.|++.+|...|-. |-.|+...+..++.-....|. +.+...+ .+.+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~----~~~~~~~~~~~ll~~~~~~~~----------------~~e~dlfi~RaV 148 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL----GTDPSAFAYVMLLEEWSTKGY----------------PSEADLFIARAV 148 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT----S-HHHHHHHHHHHHHHHHHTS----------------S--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh----cCChhHHHHHHHHHHHHHhcC----------------CcchhHHHHHHH
Confidence 677778888889999988888766543 223333333223332233333 2333322 3344
Q ss_pred HHHhcCCChhHHHHHHHHHHHC
Q 004244 732 EINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 732 ~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
-.|.-.|+...|.+.++...++
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5566678888888877766654
No 374
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.44 E-value=89 Score=29.39 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=14.2
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHh
Q 004244 624 ALLKGFCMKGLMNEADRVFELMLQ 647 (766)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~ 647 (766)
.|++.+|-.|++++|..-++-..+
T Consensus 40 flfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 40 FLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhh
Confidence 455666666666666665555544
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.40 E-value=23 Score=27.00 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=21.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHhccCChHHHHHH
Q 004244 631 MKGLMNEADRVFELMLQRNHMP-N-EAVYDIIIHGHSKVGNVQKAYDL 676 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~ 676 (766)
...+.++|+..|+..++.-..| + -.++..++.+|+.-|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555432222 1 22334445555555555555444
No 376
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.37 E-value=28 Score=31.55 Aligned_cols=82 Identities=10% Similarity=0.001 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCC-
Q 004244 670 VQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTA----------GMNEELSQVIENILRSCRLSDAELAKVLVEINHKEG- 738 (766)
Q Consensus 670 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 738 (766)
++.|.+.++.....+ +.|...+...+.++... ..+++|+.-+++++..+ |....++..++.+|...|
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHh
Confidence 455666666644332 33444444344333322 34567777788888888 455566667888877643
Q ss_pred ----------ChhHHHHHHHHHHHC
Q 004244 739 ----------NMDAVLNVLTEMAKD 753 (766)
Q Consensus 739 ----------~~~~A~~~~~~m~~~ 753 (766)
.+++|.+.|++..+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc
Confidence 245555566655543
No 377
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=65.63 E-value=1.6e+02 Score=30.03 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHH
Q 004244 635 MNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHT---AGMNEELSQV 711 (766)
Q Consensus 635 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~ 711 (766)
.+.-+.+++++++.+ +.+...+..++..+.+....++..+.+++++... +-+...|...+..... .-.+++....
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 356677788877763 2366777778888888888888888888888652 2245677776666544 3456777777
Q ss_pred HHHHHHc------CC----CC----h---HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC
Q 004244 712 IENILRS------CR----LS----D---AELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLP 757 (766)
Q Consensus 712 ~~~~~~~------~~----~~----~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 757 (766)
|.++++. +. .+ + ..++..+...+.++|..+.|+.+++-+.+-++.-
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~ 187 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFR 187 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCC
Confidence 7776544 10 00 0 2234455566778899999999999988888743
No 378
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.62 E-value=13 Score=21.40 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=9.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 004244 695 LVKALHTAGMNEELSQVIENIL 716 (766)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~ 716 (766)
++..+...|++++|...+++++
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333344444444444444443
No 379
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.27 E-value=76 Score=31.06 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=9.9
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 004244 332 NGYCKEGNLHQALVLHAEMVR 352 (766)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~ 352 (766)
-.|.|.|+...+.++-...++
T Consensus 126 LLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 126 LLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 334455555554444444443
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.05 E-value=56 Score=28.06 Aligned_cols=69 Identities=14% Similarity=0.043 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 686 VPHTVTIIVLVKALHTAGM---NEELSQVIENILRSC-RLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 686 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
.+...+-..+.+++.++.+ ..+.+.+++.+.+.. +...-.....|+-++.+.|+++++.++.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 5677778889999988765 566788999999743 22334444567777888888888888887776653
No 381
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.03 E-value=12 Score=37.39 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=83.0
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHH
Q 004244 629 FCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEE 707 (766)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 707 (766)
....|.+++|++.|...++.. +|....|..-.+++.+.+++..|+.=+.... .+.||. ..|-.=..+-...|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~--ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI--EINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh--ccCcccccccchhhHHHHHhhchHH
Confidence 345788999999999998853 3366677777788899999999999888887 346665 233333445567899999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 708 LSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 708 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
|...+..+.+.++......+ |-...-..+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 99999999999865555444 44444445555554444444433
No 382
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.54 E-value=85 Score=25.34 Aligned_cols=51 Identities=10% Similarity=0.155 Sum_probs=24.1
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004244 473 GFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRG 529 (766)
Q Consensus 473 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 529 (766)
.+...|++++|..+.+.+ +.||...|..|.. .+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344555555555544433 3455555544432 23444444444444454444
No 383
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=60.33 E-value=37 Score=26.91 Aligned_cols=64 Identities=25% Similarity=0.176 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHhcCCChh-HHHHHHHHH
Q 004244 687 PHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLS-DAELAKVLVEINHKEGNMD-AVLNVLTEM 750 (766)
Q Consensus 687 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~-~A~~~~~~m 750 (766)
.|......+...+...|++++|.+.+-.+++.+... +...-..+++++...|.-+ -+.++.++|
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 344777788999999999999999999999886433 3444566778877777744 445555544
No 384
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=60.21 E-value=3e+02 Score=31.17 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=67.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004244 578 GLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVY 657 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 657 (766)
++..-|+-++|..+.++|.... .| ..-|+.+. ++..+|+..|+.....+++.-.... ...|..-+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dp-ilR~~Gm~------------t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRa 574 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DP-ILRYGGMY------------TLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRA 574 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-ch-hhhhhhHH------------HHHHHHhccCchhhHHHhhcccccc-cchHHHHH
Confidence 3456677788888888887642 22 11222222 2225777788777666666554432 23344444
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHH
Q 004244 658 DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIV--LVKALHTAGMNEELSQVIENILR 717 (766)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 717 (766)
..+.-++.-..+++....+..-+.+ .+.|....-.+ |.-+|...| ..+|+.+++.+..
T Consensus 575 AVialGFVl~~dp~~~~s~V~lLse-s~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 575 AVIALGFVLFRDPEQLPSTVSLLSE-SYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred HHHHheeeEecChhhchHHHHHHhh-hcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 4444455556666666666655443 34555533332 333333334 3667777777765
No 385
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.79 E-value=37 Score=36.57 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=72.8
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHH
Q 004244 665 SKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVL 744 (766)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 744 (766)
...|+...|...+..+......-..+....|+..+.+.|...+|-.++.+.+... ..++-.+..+++++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3579999999999988733212223667778899999999999999999999887 555666778999999999999999
Q ss_pred HHHHHHHHCCC
Q 004244 745 NVLTEMAKDGL 755 (766)
Q Consensus 745 ~~~~~m~~~~~ 755 (766)
+.|+..+++..
T Consensus 697 ~~~~~a~~~~~ 707 (886)
T KOG4507|consen 697 EAFRQALKLTT 707 (886)
T ss_pred HHHHHHHhcCC
Confidence 99999887654
No 386
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.59 E-value=22 Score=33.40 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=25.1
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 630 CMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
.+.|+.+.|.+++.+..+. .| ....|.-+.....+.|+.+.|.+.+++.+
T Consensus 6 ~~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 6 AESGDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred cccCChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 3445555555555555542 23 34445555555555555555555555554
No 387
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.10 E-value=64 Score=32.39 Aligned_cols=88 Identities=10% Similarity=-0.084 Sum_probs=45.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhc
Q 004244 660 IIHGHSKVGNVQKAYDLYKKMVRSGF-VPHT--VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHK 736 (766)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 736 (766)
=+.-|.+..++..|.+.|.+-++... .||. +.|..=+.+-...|++..|+.=..+++..+ |.+...|..-+.++..
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHHHHH
Confidence 34445566666666666666543221 2322 444444444455566666666666666655 4445555555555555
Q ss_pred CCChhHHHHHHH
Q 004244 737 EGNMDAVLNVLT 748 (766)
Q Consensus 737 ~g~~~~A~~~~~ 748 (766)
..++++|..+.+
T Consensus 166 Le~~~~a~nw~e 177 (390)
T KOG0551|consen 166 LERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHh
Confidence 555444444433
No 388
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=57.92 E-value=2.2e+02 Score=29.04 Aligned_cols=125 Identities=9% Similarity=0.038 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 004244 516 TEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNK---QARTMEAKKLL 592 (766)
Q Consensus 516 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~l~ 592 (766)
+.-+.+++++++.+ +.+.......+..+.+..+.++..+.+++++.. .+-+...|...++.... .-.+++...+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-NPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44455666666653 445555666666666666667666777777665 23355666666655432 22355555555
Q ss_pred HHHHhC------CC----CCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCC
Q 004244 593 LKLFYD------ES----VPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNH 650 (766)
Q Consensus 593 ~~~~~~------~~----~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (766)
.+.+.. +. .+...+...++ ..+..+......+|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l--------~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFML--------YVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHH--------HHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 444321 10 00011111111 1122233566789999999999999998554
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.26 E-value=1.4e+02 Score=31.48 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=41.5
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH--hccCChHHHHHHHHHHHHc
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEA--VYDIIIHGH--SKVGNVQKAYDLYKKMVRS 683 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 683 (766)
......+++..|.++++.+.+. ++++.. .|..+..+| +..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556889999999999999986 555444 444444444 4678889999999987743
No 390
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.20 E-value=60 Score=30.92 Aligned_cols=89 Identities=11% Similarity=-0.027 Sum_probs=69.1
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Q 004244 663 GHSKVGNVQKAYDLYKKMVRSGFVPHTVT-IIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMD 741 (766)
Q Consensus 663 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 741 (766)
.|....+++.|+..|.+++. +.|...+ |..=+..+.+..+++.+..--.++++.. ++.+....-++..+.....++
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhcccc
Confidence 35566778899998888884 5687744 4455667778889999888888888886 555666677889999999999
Q ss_pred HHHHHHHHHHHCC
Q 004244 742 AVLNVLTEMAKDG 754 (766)
Q Consensus 742 ~A~~~~~~m~~~~ 754 (766)
+|+..+.+....+
T Consensus 96 eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 96 EAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999885443
No 391
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.46 E-value=4.5 Score=40.25 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=72.2
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHH
Q 004244 665 SKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVL 744 (766)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 744 (766)
...|.+++|++.+...++.. +|....|..-..++.+.++...|+.-+..+++.+ ++...-|---..+....|+|++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHH
Confidence 36788999999999998653 3344556666788889999999999999999987 555555655566667789999999
Q ss_pred HHHHHHHHCCCCCC
Q 004244 745 NVLTEMAKDGLLPN 758 (766)
Q Consensus 745 ~~~~~m~~~~~~~~ 758 (766)
..+....+.++.+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 99999888887654
No 392
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.07 E-value=41 Score=23.50 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=16.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
.++-++.+.|++++|..+.+.+++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 34556667777777777777777765
No 393
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=54.73 E-value=2.3e+02 Score=28.15 Aligned_cols=55 Identities=5% Similarity=0.019 Sum_probs=25.4
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChh
Q 004244 252 ANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLK-GIEPNLISYNVIINGLCKEGRLK 306 (766)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~ 306 (766)
++..+-...+..+++.+++.+-.++++.-... +...|...|...|....+.|+..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 34444444455555555555555544444322 23334444555555555555443
No 394
>PRK11619 lytic murein transglycosylase; Provisional
Probab=54.63 E-value=3.8e+02 Score=30.62 Aligned_cols=117 Identities=8% Similarity=-0.011 Sum_probs=55.9
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004244 372 SGNLNRAMEFFDQMHVRE-LRPN--EKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDA 448 (766)
Q Consensus 372 ~g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A 448 (766)
..+.+.|..++....... ..+. ...+..+.......+..+++...++...... .+.....--+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345566777776653332 1111 1223333333333322445555555433322 1222333333444466677666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004244 449 VGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMV 491 (766)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 491 (766)
...+..|....- ....-.--+..++...|+.++|...|+++.
T Consensus 332 ~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666644321 133334445555555677777777766653
No 395
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.22 E-value=93 Score=26.32 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004244 518 ACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK 563 (766)
Q Consensus 518 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 563 (766)
..+-+..+...++.|++.....-++++-+.+++..|.++|+-...+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344455555566777777777777777777777777777776654
No 396
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=54.13 E-value=2.9e+02 Score=29.15 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC
Q 004244 223 NVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGR 269 (766)
Q Consensus 223 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 269 (766)
.++|+-|...|++..|..-+.++-...+. ...-..|+.+....++
T Consensus 54 ~sii~eyfstgdv~vaa~dl~elg~seyh--pyfvkrlvsmamdrhd 98 (645)
T KOG0403|consen 54 VSIIDEYFSTGDVVVAASDLKELGSSEYH--PYFVKRLVSMAMDRHD 98 (645)
T ss_pred HHHHHHHccCCCchhhHHHHHHhcccccc--HHHHHHHHHHHhhccc
Confidence 45677788888887776666555443222 2223344444444443
No 397
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.81 E-value=1.6e+02 Score=25.83 Aligned_cols=80 Identities=10% Similarity=0.208 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCC-----CCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 257 YNTLIDGYCKLGRIDDAFKLLRDMGLKGI-----EPNLISYNVIINGLCKEGR-LKETKGILNEISRKGLVPDEVTYNTL 330 (766)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~l 330 (766)
.|.++.-....+++.....+++.+..-.. ..+...|.+++.+.....- --.+..+|.-|++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555555666665555555522100 1233456666666644443 33455666666665566666666666
Q ss_pred HHHHHh
Q 004244 331 LNGYCK 336 (766)
Q Consensus 331 i~~~~~ 336 (766)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 665544
No 398
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.46 E-value=2.6e+02 Score=27.86 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 004244 570 VTYSVLINGLNKQARTMEA 588 (766)
Q Consensus 570 ~~~~~li~~~~~~g~~~~A 588 (766)
.+|.-|+.+++.+|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 4455555555555555443
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.30 E-value=48 Score=24.09 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 670 VQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILR 717 (766)
Q Consensus 670 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (766)
+++..++++.+.. ..-|..-...++.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444431 123333444566677777777777777766654
No 400
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.97 E-value=2.7e+02 Score=27.94 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=46.9
Q ss_pred CHHHH--HHHHHHHhccCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHH
Q 004244 653 NEAVY--DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT---VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELA 727 (766)
Q Consensus 653 ~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 727 (766)
+..+| .-+.-+-.+.|+..+|.+.++.+.+. .|-. .....|+.+|....-+.+...++-+--+...|..+.+.
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~ic 349 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAIC 349 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHH
Confidence 45555 34555556789999999999988743 2322 23346788887777676666666665555555555543
No 401
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=50.50 E-value=1.7e+02 Score=26.94 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=8.6
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004244 370 CKSGNLNRAMEFFDQMH 386 (766)
Q Consensus 370 ~~~g~~~~A~~~~~~m~ 386 (766)
...|++++|.+-++++.
T Consensus 40 ~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 40 LHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34455555555555443
No 402
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.13 E-value=3.2e+02 Score=28.49 Aligned_cols=93 Identities=11% Similarity=0.118 Sum_probs=62.4
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHHHHc------CCCCCHHHHHHHH
Q 004244 624 ALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHS-KVGNVQKAYDLYKKMVRS------GFVPHTVTIIVLV 696 (766)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~l~ 696 (766)
.-|..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+++.+..... ..-|+ ..|...
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~a- 185 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIA- 185 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHH-
Confidence 334778899999999999999998654436666666777776 778888888888876541 11233 333333
Q ss_pred HHHHhcCCh---------------HHHHHHHHHHHHc
Q 004244 697 KALHTAGMN---------------EELSQVIENILRS 718 (766)
Q Consensus 697 ~~~~~~g~~---------------~~A~~~~~~~~~~ 718 (766)
-++...++. ++|...+.+++..
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 344445555 7787777775544
No 403
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.12 E-value=1.3e+02 Score=25.47 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004244 674 YDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLV 731 (766)
Q Consensus 674 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 731 (766)
.+-++.+....+.|++...-..+++|.+.+++..|+.+++-+..+. .+...+|..++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-GAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 3444555556677888888888888888888888888888776653 33344454333
No 404
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=50.04 E-value=2.7e+02 Score=27.65 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 004244 320 LVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRN-GLSPNVVTYTSLINSMCKSGNLNRAMEF 381 (766)
Q Consensus 320 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~ 381 (766)
-.++..+...++..+++.+++..-.++++..... +...|...|...|+...+.|+..-..++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 3345555555666666666666666666555443 3444566666666666666665544433
No 405
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.62 E-value=4.5e+02 Score=30.02 Aligned_cols=248 Identities=10% Similarity=-0.044 Sum_probs=134.0
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004244 477 SQELDKAFDTKREMVEKG-VLPDT--ITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQA 553 (766)
Q Consensus 477 ~g~~~~A~~~~~~m~~~~-~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 553 (766)
..+.+.|...+....... ..+.. ..+..+.......+..++|...++...... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 456688999998875543 22222 233444333333333567777777654332 2444445555555689999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcC
Q 004244 554 LRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKG 633 (766)
Q Consensus 554 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g 633 (766)
...+..|.... .-...-..-+..++...|+.++|...|+++... . +|-.++++ .+.|
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LAa----------------~~Lg 388 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVAA----------------QRLG 388 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHHH----------------HHcC
Confidence 99998886532 223344445677777789999999999998431 2 34333311 1111
Q ss_pred CH---HH--HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 004244 634 LM---NE--ADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEEL 708 (766)
Q Consensus 634 ~~---~~--A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 708 (766)
.. .. .-.. .. . +..++ -..-+..+.+.|...+|...+..+... .+......+.....+.|..+.+
T Consensus 389 ~~~~~~~~~~~~~-~~--~--~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~a 458 (644)
T PRK11619 389 EEYPLKIDKAPKP-DS--A--LTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLS 458 (644)
T ss_pred CCCCCCCCCCCch-hh--h--hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHH
Confidence 11 00 0000 00 0 00011 112344566788888998888887753 3444556666667788888888
Q ss_pred HHHHHHHHHcCCC--ChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCC
Q 004244 709 SQVIENILRSCRL--SDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLPNS 759 (766)
Q Consensus 709 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 759 (766)
+....+....+.. .-+..|...+..+.+.-..+.++-+---..+++..|+.
T Consensus 459 i~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 459 VQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 7766543321100 00112334444444444555555544445556665553
No 406
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.23 E-value=2.5e+02 Score=27.05 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=55.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHh------CCCCCCHHH-----------HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 004244 627 KGFCMKGLMNEADRVFELMLQ------RNHMPNEAV-----------YDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT 689 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~------~~~~p~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 689 (766)
+-+.+.|++.+|..-|.+++. ..-+|-..- +..+..++...|++-++++.-.+.+... +-+.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchH
Confidence 456677888887777765531 011232211 2223344556677777777777777542 2333
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 004244 690 VTIIVLVKALHTAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (766)
..|..=+.+....=+.++|..-+.++++.++
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 5565556666666677788888888887763
No 407
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.20 E-value=34 Score=24.88 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
|..---.++.+|.+.|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33333455666666666666666666654
No 408
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=48.56 E-value=1.3e+02 Score=31.75 Aligned_cols=50 Identities=6% Similarity=0.034 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCh
Q 004244 674 YDLYKKMVRSGFVPHT--VTIIVLVKALHTAGMNEELSQVIENILRSCRLSD 723 (766)
Q Consensus 674 ~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 723 (766)
+++-.-+....++|.. -++...+..+++.+++..|..+.+++++.+++++
T Consensus 283 lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 283 LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 3443334333444433 3344555666778888888888888888775554
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.55 E-value=2.6e+02 Score=27.03 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=15.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 472 SGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGL 509 (766)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 509 (766)
...-+.++++++...++++...+...+..-.+.|..+|
T Consensus 9 klaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 9 KLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 33444445555555555554444444443333333333
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.45 E-value=1.5e+02 Score=24.31 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004244 201 KFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDM 280 (766)
Q Consensus 201 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 280 (766)
++|..+.+-+...+. -...+--+-+..+...|++++| +.. ......||...|-+|-. .+.|--+++...+.++
T Consensus 23 ~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~-~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 23 QEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLL-PQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHH-HTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHh-cccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 556666655555432 1122222223345566666666 111 11223455555555432 2555555666666555
Q ss_pred hhC
Q 004244 281 GLK 283 (766)
Q Consensus 281 ~~~ 283 (766)
...
T Consensus 96 a~~ 98 (116)
T PF09477_consen 96 ASS 98 (116)
T ss_dssp CT-
T ss_pred HhC
Confidence 544
No 411
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=48.14 E-value=36 Score=35.84 Aligned_cols=101 Identities=15% Similarity=-0.006 Sum_probs=50.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 004244 579 LNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPN-EAVY 657 (766)
Q Consensus 579 ~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 657 (766)
+.+.+.++.|..++.++++ ..|+...|-+.-+ .++.+.+++..|+.=+.++++.. |+ ...|
T Consensus 14 ~l~~~~fd~avdlysKaI~--ldpnca~~~anRa--------------~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y 75 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRA--------------LAHLKVESFGGALHDALKAIELD--PTYIKAY 75 (476)
T ss_pred hcccchHHHHHHHHHHHHh--cCCcceeeechhh--------------hhheeechhhhHHHHHHhhhhcC--chhhhee
Confidence 3455566666666666665 4555444433221 45556666666666666665532 31 2223
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004244 658 DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKAL 699 (766)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 699 (766)
.-=+.++.+.+++.+|+..|+... .+.|+..-....+.-|
T Consensus 76 ~rrg~a~m~l~~~~~A~~~l~~~~--~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 76 VRRGTAVMALGEFKKALLDLEKVK--KLAPNDPDATRKIDEC 115 (476)
T ss_pred eeccHHHHhHHHHHHHHHHHHHhh--hcCcCcHHHHHHHHHH
Confidence 223334444555555555555554 2345554444444433
No 412
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.13 E-value=1.4e+02 Score=23.70 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCh
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVP-HTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 705 (766)
|...-..+...+...|++++|++.+-+++...-.. +...-..++..+...|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 67777889999999999999999999988543222 223344555555555553
No 413
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=47.74 E-value=1.9e+02 Score=28.47 Aligned_cols=86 Identities=9% Similarity=-0.020 Sum_probs=54.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----Hh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKAL-----HT 701 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~ 701 (766)
+++...+++.+++...-+-.+.--+-.+.+....|-.|.+.|......++-...+...-.-+...|..++..| .=
T Consensus 91 QALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlP 170 (309)
T PF07163_consen 91 QALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLP 170 (309)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhc
Confidence 7888888888888766554432111134455556667888999888888888777432222223455555444 44
Q ss_pred cCChHHHHHHH
Q 004244 702 AGMNEELSQVI 712 (766)
Q Consensus 702 ~g~~~~A~~~~ 712 (766)
.|.+++|.+++
T Consensus 171 LG~~~eAeelv 181 (309)
T PF07163_consen 171 LGHFSEAEELV 181 (309)
T ss_pred cccHHHHHHHH
Confidence 68888888776
No 414
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.73 E-value=1.5e+02 Score=25.38 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 672 KAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQVIENI 715 (766)
Q Consensus 672 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (766)
++.++|+.|..+|+--. ...|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 67777777776665433 245556666666677777777766654
No 415
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.29 E-value=2.4e+02 Score=28.64 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=55.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHh---CCCCCCHHHH--HHHHHHHhccCChHHHHHHHHHHHH-----cCCCCCH-HHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQ---RNHMPNEAVY--DIIIHGHSKVGNVQKAYDLYKKMVR-----SGFVPHT-VTIIVL 695 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~-~~~~~l 695 (766)
....+.++.++|++.++++.+ ..-.|+...| ...+.++...|+.+++.+++.+..+ .+++|+. ..|..+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 344566699999999999874 2334667666 4566777789999999999888775 5666655 334444
Q ss_pred HHHHH-hcCChHHH
Q 004244 696 VKALH-TAGMNEEL 708 (766)
Q Consensus 696 ~~~~~-~~g~~~~A 708 (766)
..-|. ..|++...
T Consensus 163 ssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 163 SSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHhHHHH
Confidence 44443 44555543
No 416
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=46.85 E-value=3.3e+02 Score=27.66 Aligned_cols=127 Identities=10% Similarity=0.016 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004244 584 RTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHG 663 (766)
Q Consensus 584 ~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 663 (766)
-++++..++++....+. |-.+.....|.+|+-. ......-+|..-..+|+.+.....+| .++.|-- -+
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~---------a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRA-VA 338 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHAR---------ARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRA-VA 338 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHh---------hcccCCCChHHHHHHHHHHHHhCCCC-eEeehHH-HH
Confidence 35677778888777644 7777777777555421 11233456778888888888754333 2333432 23
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004244 664 HSKVGNVQKAYDLYKKMVRSGFVPHTV-TIIVLVKALHTAGMNEELSQVIENILRSCRLS 722 (766)
Q Consensus 664 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 722 (766)
..+..-.+.++.+.+-+.+.+--.+-. .+..=...+.+.|+.++|...|++++......
T Consensus 339 la~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 339 LAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 445555677788888776542111112 23344667789999999999999999885333
No 417
>PRK10941 hypothetical protein; Provisional
Probab=46.36 E-value=1.1e+02 Score=30.22 Aligned_cols=62 Identities=10% Similarity=0.095 Sum_probs=47.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 656 VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
..+.+-.+|.+.++++.|+...+.++. +.|+. .-+.--+-.+.+.|.+..|..-++..++..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345666778889999999999998885 34554 445556667888899999999888888876
No 418
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.97 E-value=53 Score=19.23 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=14.5
Q ss_pred CChHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004244 703 GMNEELSQVIENILRSCRLSDAELAKVLV 731 (766)
Q Consensus 703 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 731 (766)
|+.+.|..++++++... +.....|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 34555666666666554 34445554433
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.81 E-value=1.1e+02 Score=24.50 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=17.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 694 VLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
.++......|+.++|...++++++.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455566678888888877777655
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.86 E-value=77 Score=25.30 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=33.2
Q ss_pred HhcCChHHHHHHHHHHHHc----CCCC----hHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 700 HTAGMNEELSQVIENILRS----CRLS----DAELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 700 ~~~g~~~~A~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
.+.|++.+|.+.+.+.... +... -......++......|++++|.+.+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3556666665555554433 1111 1223345677788899999999999887653
No 421
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.61 E-value=3.1e+02 Score=26.50 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 004244 504 SLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYC-TEGDIPQALRLHDEMI 561 (766)
Q Consensus 504 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 561 (766)
.++....+.|+++++...++++...+...+..--+.|..+|- ..|....+++++....
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 355566677777777777777777765666666666666663 2344455555555544
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.03 E-value=2.6e+02 Score=29.34 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 004244 510 CEQRRITEACELFQEMLSRGMSPDEF--TYTTLINAYC--TEGDIPQALRLHDEMIQ 562 (766)
Q Consensus 510 ~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 562 (766)
.+.+++..|.++++.+... ++++.. .+..+..+|. ...++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455555555555555554 333332 3333334432 34455556555555543
No 423
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=42.86 E-value=1.8e+02 Score=27.71 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=10.9
Q ss_pred HHHHhccCChHHHHHHHHHH
Q 004244 661 IHGHSKVGNVQKAYDLYKKM 680 (766)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~m 680 (766)
+....+.|+.++|++..+.+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 34445556666665555554
No 424
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.30 E-value=4e+02 Score=27.39 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=26.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHHC
Q 004244 509 LCEQRRITEACELFQEMLSRGMSPDEFTYTTLINA----YCTEGDIPQALRLHDEMIQK 563 (766)
Q Consensus 509 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~ 563 (766)
+.+.++..-|......+.++.+.--..+|.+|--. ..+.+..++|.+..-+|.+.
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~ 345 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIED 345 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 34455556666666555554433333344433211 12344555555555555543
No 425
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.22 E-value=3.2e+02 Score=26.21 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 494 GVLPDTITYSSLIHGLCEQRRITEACELFQEMLSR-G-----------MSPDEFTYTTLINAYCTEGDIPQALRLHDEMI 561 (766)
Q Consensus 494 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 561 (766)
++.-+.....+++ +...|+..+|+..++.-... | -.|.+.....++..| ..+++++|.+++.++.
T Consensus 189 kv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw 265 (333)
T KOG0991|consen 189 KVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELW 265 (333)
T ss_pred CCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 3433333344443 55667777777666654331 1 034555555555443 3466777777777777
Q ss_pred HCCCCCCH
Q 004244 562 QKGFLPDV 569 (766)
Q Consensus 562 ~~g~~p~~ 569 (766)
+.|+.|..
T Consensus 266 ~lgysp~D 273 (333)
T KOG0991|consen 266 KLGYSPED 273 (333)
T ss_pred HcCCCHHH
Confidence 77766643
No 426
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.22 E-value=6.4e+02 Score=29.74 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=28.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 543 AYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNK 581 (766)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 581 (766)
.|+.....+-+..+++.+....-.++..-.+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 466777888888899988866555677777777777653
No 427
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.14 E-value=2.8e+02 Score=28.30 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHh
Q 004244 671 QKAYDLYKKMVRSGFVPHT----VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINH 735 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 735 (766)
++...++..+++. .|+. ..|.+++...-..|.+++.+.+|++++..|..|-...-..+++++-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4556666666643 4554 4566667777777777777777777777765655555445555544
No 428
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.89 E-value=1.8e+02 Score=24.10 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 004244 222 YNVLIRGFCGVGDLEMGLRFFSEMEK 247 (766)
Q Consensus 222 ~~~li~~~~~~g~~~~A~~~~~~m~~ 247 (766)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666666554
No 429
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.40 E-value=3.7e+02 Score=26.65 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004244 535 FTYTTLINAYCTEGDIPQALRLHDEMIQ----KGFLPDVVTYS-VLINGLNKQARTMEAKKLLLKLFYDESVP 602 (766)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~~~~~~~~p 602 (766)
..+..+..-|++.++.+.+.+..++..+ .|.+.|+.... .|.-.|....-.++-++..+.++++|...
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 3455555556666666655555544432 24444433221 12222333334455555555555555443
No 430
>PHA03100 ankyrin repeat protein; Provisional
Probab=41.28 E-value=4.3e+02 Score=28.70 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=7.1
Q ss_pred HHHHHHHCCCCCCH
Q 004244 168 IVNLAKVHGFMPGV 181 (766)
Q Consensus 168 ~~~~~~~~g~~~~~ 181 (766)
+.+.+.+.|..|+.
T Consensus 50 ivk~Ll~~g~~~~~ 63 (480)
T PHA03100 50 VVKILLDNGADINS 63 (480)
T ss_pred HHHHHHHcCCCCCC
Confidence 34444455665543
No 431
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.00 E-value=61 Score=34.24 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=72.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDII-IHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGM 704 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~ 704 (766)
....+.+.++.|+.++.++++ +.||...|.+. ..++.+.+++..|+.=+.++++. .|.. ..|..=+.++.+.++
T Consensus 12 n~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHH
Confidence 556678899999999999998 46866555333 37788999999999988888854 3543 455555677888899
Q ss_pred hHHHHHHHHHHHHcCCCChHH
Q 004244 705 NEELSQVIENILRSCRLSDAE 725 (766)
Q Consensus 705 ~~~A~~~~~~~~~~~~~~~~~ 725 (766)
..+|...+++..... |.+..
T Consensus 88 ~~~A~~~l~~~~~l~-Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLA-PNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcC-cCcHH
Confidence 999999999998886 44443
No 432
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.54 E-value=61 Score=22.66 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=19.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 004244 575 LINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTL 610 (766)
Q Consensus 575 li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l 610 (766)
+.-++.+.|++++|.+..+.+++ +.|+......|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 44455667777777777776666 45655544443
No 433
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.44 E-value=1.6e+02 Score=25.06 Aligned_cols=43 Identities=9% Similarity=0.042 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCCC-hHHHHHHHHHHHhcCCChhHHHHHHH
Q 004244 706 EELSQVIENILRSCRLS-DAELAKVLVEINHKEGNMDAVLNVLT 748 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 748 (766)
+++..+|+-+...++.. .+..|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556666666665332 24445666666777777777777765
No 434
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.42 E-value=4.1e+02 Score=26.91 Aligned_cols=109 Identities=19% Similarity=0.145 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC
Q 004244 494 GVLPDTITYSSLIHGLCEQRRITEACELFQEMLSR-GMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK----GFLPD 568 (766)
Q Consensus 494 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~ 568 (766)
.+..|...++.|..+ +..+.++-.+..++..+. |-..-...+.....-||+-|+-+.|.+.+....++ |.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 344555555555432 222333333333333332 21222334555666778888888877777655433 66666
Q ss_pred HHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 004244 569 VVTYSVLI-NGLNKQARTMEAKKLLLKLFYDESVPSD 604 (766)
Q Consensus 569 ~~~~~~li-~~~~~~g~~~~A~~l~~~~~~~~~~p~~ 604 (766)
+.-+..=+ -.|....-..+-++..+.+.++|...+.
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 65554322 2334455566666777777777665554
No 435
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.17 E-value=3.1e+02 Score=25.43 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=7.7
Q ss_pred cCCHHHHHHHHHHHHH
Q 004244 442 GGRVEDAVGVLHGMAR 457 (766)
Q Consensus 442 ~g~~~~A~~~~~~~~~ 457 (766)
.|+++.|.+.++-|.+
T Consensus 134 ~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 134 KGSFEEAERFLKFMEK 149 (204)
T ss_pred hccHHHHHHHHHHHHH
Confidence 3455555555544443
No 436
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.13 E-value=2.6e+02 Score=32.26 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=37.9
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004244 265 CKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQAL 344 (766)
Q Consensus 265 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 344 (766)
..+|+++.|++.-.++. |..+|..|......+|+.+-|...|++.+. |..|--.|.-.|+.++-.
T Consensus 654 Le~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 34566666666554442 445666666666666666666666665543 222223344455555555
Q ss_pred HHHHH
Q 004244 345 VLHAE 349 (766)
Q Consensus 345 ~~~~~ 349 (766)
++...
T Consensus 719 Km~~i 723 (1202)
T KOG0292|consen 719 KMMKI 723 (1202)
T ss_pred HHHHH
Confidence 44443
No 437
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.47 E-value=4.2e+02 Score=26.81 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=77.9
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 004244 458 KGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEK-GVLPDTITYSSLIHGLCEQRRITEACELFQEMLS----RGMSP 532 (766)
Q Consensus 458 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p 532 (766)
..++.|...++.|...- ..++++--+..++..+. |-.--...+.....-||+.|+-+.|.+.+++..+ .|.+-
T Consensus 64 ~~i~~D~~~l~~m~~~n--eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki 141 (393)
T KOG0687|consen 64 LVIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI 141 (393)
T ss_pred cceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 34555666666665431 12222222223333322 2222234566777889999999999998887655 46677
Q ss_pred CHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004244 533 DEFTYTTLINA-YCTEGDIPQALRLHDEMIQKGFLPDVV----TYSVLINGLNKQARTMEAKKLLLKLFY 597 (766)
Q Consensus 533 ~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~l~~~~~~ 597 (766)
|+..+..-+.. |....-+.+-++..+.+.+.|-..+.. +|..+.. ....++.+|..+|-+.+.
T Consensus 142 DVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 142 DVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 77655443332 344444566666667777776544433 3433322 245678888888877654
No 438
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.31 E-value=3.6e+02 Score=29.31 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=20.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEA 655 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 655 (766)
......+....|+.++.++.+.|.+|...
T Consensus 256 ~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 256 KSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 55544455678999999999988777544
No 439
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.87 E-value=4.7e+02 Score=27.24 Aligned_cols=99 Identities=14% Similarity=0.186 Sum_probs=66.5
Q ss_pred hhhHHHHHhhhhhcCCHHHHHHHHHHHH---h----CCC-----------------CC-CHHHHHH---HHHHHhccCCh
Q 004244 619 FQNVAALLKGFCMKGLMNEADRVFELML---Q----RNH-----------------MP-NEAVYDI---IIHGHSKVGNV 670 (766)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~----~~~-----------------~p-~~~~~~~---l~~~~~~~g~~ 670 (766)
++++..+...+...|+.+.|.+++++++ + ... .+ |...|.+ .+..+.+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 3344455578889999988888887763 1 111 11 3333433 35567789999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 004244 671 QKAYDLYKKMVRSGFVPHTVTIIVLVKALH-TAGMNEELSQVIENILR 717 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 717 (766)
..|+++.+-+......-|+......++.|. ++++++--+++.+....
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 999999999986543335655666666654 67888888888887665
No 440
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.59 E-value=1.5e+02 Score=31.14 Aligned_cols=25 Identities=0% Similarity=-0.174 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHH
Q 004244 725 ELAKVLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (766)
.++..++-+|...+++.+|.+.|..
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555444443
No 441
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.50 E-value=35 Score=29.18 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=13.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCH
Q 004244 666 KVGNVQKAYDLYKKMVRSGFVPHT 689 (766)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~~~~p~~ 689 (766)
+.|.-.+|..+|++|++.|-+||.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc
Confidence 344455555666666666555553
No 442
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.33 E-value=74 Score=25.49 Aligned_cols=45 Identities=11% Similarity=-0.073 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 674 YDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 674 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
.+.+++...++....+-....|.-.|...|+.+.|.+-|+.-...
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 334455544443333333444555666777777777766654444
No 443
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.13 E-value=68 Score=30.36 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=51.9
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHH
Q 004244 663 GHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELA 727 (766)
Q Consensus 663 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 727 (766)
...+.|+.+.|.+++.+++ +..|+. ..|..+...--++|+.+.|.+.+++.++.++++....-
T Consensus 4 ~~~~~~D~~aaaely~qal--~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa 67 (287)
T COG4976 4 MLAESGDAEAAAELYNQAL--ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAA 67 (287)
T ss_pred hhcccCChHHHHHHHHHHh--hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchh
Confidence 4567899999999999998 455655 78888998889999999999999999999866654443
No 444
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.40 E-value=1.2e+02 Score=20.62 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004244 157 SHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILD 189 (766)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 189 (766)
-+.|...++..+++.|...|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666677777777777777666666665554
No 445
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.31 E-value=1.3e+02 Score=27.91 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004244 216 SPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEK 247 (766)
Q Consensus 216 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 247 (766)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 446
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.24 E-value=2.1e+02 Score=22.58 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 004244 372 SGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEA 413 (766)
Q Consensus 372 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 413 (766)
.|+.+.|.++++.+. +| ...|..+++++...|+-+-|
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 355556666665555 42 23455555555555544433
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.06 E-value=2.4e+02 Score=23.30 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhh
Q 004244 257 YNTLIDGYCKLGRIDDAFKLLRDMGL 282 (766)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~l~~~m~~ 282 (766)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77888888888888888888888765
No 448
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.51 E-value=2.4e+02 Score=23.20 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=42.2
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 004244 234 DLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILN 313 (766)
Q Consensus 234 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 313 (766)
..++|..+.+.+...+. -..++--.-+..+.+.|+|++|+ .. ......||...|-++-. .+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~--~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LL--PQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HH--HTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hh--cccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45677777777776653 12233333445566778888772 21 12223567777765543 36677777777777
Q ss_pred HHHHCC
Q 004244 314 EISRKG 319 (766)
Q Consensus 314 ~m~~~g 319 (766)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 666554
No 449
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.57 E-value=1.4e+02 Score=20.34 Aligned_cols=27 Identities=4% Similarity=-0.012 Sum_probs=11.4
Q ss_pred cCChhhHHHHHHHHHhCCCCcCHHHHH
Q 004244 232 VGDLEMGLRFFSEMEKNNCLANVVTYN 258 (766)
Q Consensus 232 ~g~~~~A~~~~~~m~~~g~~~~~~~~~ 258 (766)
.|-..++..++++|.+.|+.-+...|.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 334444444444444444444433333
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.35 E-value=2.5e+02 Score=25.78 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004244 635 MNEADRVFELMLQRNHMPNE-------AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHT 701 (766)
Q Consensus 635 ~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 701 (766)
++.|+.+|+.+.+.-..|.. ..-...+-.|.+.|.+++|.+++++... .|+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHH
Confidence 56777778777754322211 1112345568899999999999999873 4555444444434333
No 451
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.33 E-value=3e+02 Score=27.91 Aligned_cols=56 Identities=11% Similarity=0.220 Sum_probs=33.4
Q ss_pred HHHhccCChHHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 004244 662 HGHSKVGNVQKAYDLYKKMVRS---GFVPHTVTII--VLVKALHTAGMNEELSQVIENILR 717 (766)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 717 (766)
...-+.++.++|+++++++.++ --.|+.+.+. ..+..+...|+.+++.+.++...+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344555777777777777632 1245555444 344555567777777777776655
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.52 E-value=2.2e+02 Score=27.72 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CC-CChHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 693 IVLVKALHTAGMNEELSQVIENILRS----CR-LSDAELAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
..++.-+...|++++|.++++.+... +. .....+...+..++.+.|+.++.+.+--+|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 35677788888888888888887543 11 1124455667778888888888877765553
No 453
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.01 E-value=5.7e+02 Score=26.76 Aligned_cols=54 Identities=11% Similarity=-0.111 Sum_probs=38.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHH--hccCChHHHHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAV----YDIIIHGH--SKVGNVQKAYDLYKKM 680 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~--~~~g~~~~A~~~~~~m 680 (766)
..+.+.+++..|.++|+++.+...+|+... |..+..+| +..-++++|.+.++++
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~ 197 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP 197 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc
Confidence 466788999999999999998765554332 33344443 4677889999999863
No 454
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.27 E-value=2.8e+02 Score=25.42 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=14.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhh
Q 004244 260 LIDGYCKLGRIDDAFKLLRDMGL 282 (766)
Q Consensus 260 li~~~~~~g~~~~A~~l~~~m~~ 282 (766)
.+..|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34456667777777777776654
No 455
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.06 E-value=3e+02 Score=23.23 Aligned_cols=84 Identities=17% Similarity=0.084 Sum_probs=47.2
Q ss_pred ccCChHHHHHHHHHHH--HcCCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-C-CChHHHHH
Q 004244 666 KVGNVQKAYDLYKKMV--RSGFVP---------HTVTIIVLVKALHTAGMNEELSQVIENILRS----C-R-LSDAELAK 728 (766)
Q Consensus 666 ~~g~~~~A~~~~~~m~--~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~-~~~~~~~~ 728 (766)
+.|.+++|..-+.++. ...++| |..++..|..++...|+++++..-.++++.. + . .++...|.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 4566666666555543 222222 2245566777788888888877776666543 1 1 23333332
Q ss_pred ----HHHHHHhcCCChhHHHHHHHH
Q 004244 729 ----VLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 729 ----~l~~~~~~~g~~~~A~~~~~~ 749 (766)
.-+-++...|+.++|++.|+.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Confidence 233566778999999888765
No 456
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.03 E-value=3.1e+02 Score=23.38 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 342 QALVLHAEMVRNGLSPN-VVTYTSLINSMCKSGNLNRAMEFFDQ 384 (766)
Q Consensus 342 ~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 384 (766)
.+.++|..|...|+-.. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777776655443 44566666666677777777777654
No 457
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.31 E-value=2.4e+02 Score=27.53 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=39.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 657 YDIIIHGHSKVGNVQKAYDLYKKMVR----SGFV-PHTVTIIVLVKALHTAGMNEELSQVIENI 715 (766)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (766)
...++.-|.+.|++++|.++|+.+.. .|.. +...+...+..+....|+.++.+.+.=++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34577888999999999999998852 2321 23345556677777778877766654433
No 458
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.02 E-value=3.1e+02 Score=25.38 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 004244 674 YDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 674 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (766)
.+..++.. ...|++..+..++..+...|+.++|....+++...-+
T Consensus 131 ~~~a~~~l--~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLL--RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHH--HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444 3468888888888888888888888888888887763
No 459
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.95 E-value=7.3e+02 Score=27.39 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=63.2
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhc
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHS-KVGNVQKAYDLYKKMVRS---GFVPHTVTIIVLVKALHTA 702 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~ 702 (766)
....+.|-+..|.+..+.+......-|+.....+|+.|+ +..++.=-+++++..... ..-|+...-.+++..+...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 566788999999999999988654446777777888876 677788788888776432 2346654444556555554
Q ss_pred CC---hHHHHHHHHHHHHcC
Q 004244 703 GM---NEELSQVIENILRSC 719 (766)
Q Consensus 703 g~---~~~A~~~~~~~~~~~ 719 (766)
.. .+.|...+.+++..-
T Consensus 430 ~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQALKHH 449 (665)
T ss_pred CChhhHHHHHHHHHHHHHhC
Confidence 43 456666666666553
No 460
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.97 E-value=5.4e+02 Score=25.54 Aligned_cols=99 Identities=10% Similarity=0.016 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHH
Q 004244 567 PDVVTYSVLINGLNKQARTMEAKKLLLKLFYD----ESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVF 642 (766)
Q Consensus 567 p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 642 (766)
.-...+..+.+-|++.++.+.+.++..+..+. |.+-|.....+-++ -.|....-.++.++..
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg--------------~~y~d~~vV~e~lE~~ 178 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLG--------------LIYGDRKVVEESLEVA 178 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHH--------------HhhccHHHHHHHHHHH
Confidence 34567888889999999999998887776543 56666554443332 3444445567888888
Q ss_pred HHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 643 ELMLQRNHMPNE----AVYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 643 ~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
+.|.++|.+.+. .+|..+ .+....++.+|-.++-..+
T Consensus 179 ~~~iEkGgDWeRrNRyK~Y~Gi--~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 179 DDIIEKGGDWERRNRYKVYKGI--FKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHhCCCHHhhhhHHHHHHH--HHHHHHhhHHHHHHHHHHh
Confidence 888888876532 233332 2334567778777776655
No 461
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.21 E-value=93 Score=30.94 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 004244 292 YNVIINGLCKEGRLKETKGILNEISRKGLV 321 (766)
Q Consensus 292 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 321 (766)
|+..|....+.|++++|+++++|.++.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 462
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.18 E-value=9.2e+02 Score=28.24 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=67.0
Q ss_pred hhhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHh---------------ccCChHHHHHHHHHHHHcCCCC
Q 004244 629 FCMKGLMNEADRVFELMLQRN------HMPNEAVYDIIIHGHS---------------KVGNVQKAYDLYKKMVRSGFVP 687 (766)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~m~~~~~~p 687 (766)
....|++.+|++.|+.++-.- -.-+..-...++..+. ..+..+++.++-.-.....++|
T Consensus 1001 ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp 1080 (1202)
T KOG0292|consen 1001 LTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQP 1080 (1202)
T ss_pred hhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCc
Confidence 346899999999999886320 0112222233333331 2344555555544444555666
Q ss_pred CH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHh
Q 004244 688 HT--VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINH 735 (766)
Q Consensus 688 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 735 (766)
-. -+....+..+.+.+++..|..+..+.++.++.++.......+...+
T Consensus 1081 ~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~ 1130 (1202)
T KOG0292|consen 1081 MHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAA 1130 (1202)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Confidence 54 4455678889999999999999999999987666555444444444
No 463
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.07 E-value=2.8e+02 Score=21.89 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=20.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004244 546 TEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEA 588 (766)
Q Consensus 546 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 588 (766)
..|+.+.|.+++..+. +| +..+..+++++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 4456666666666665 32 23445556666555554443
No 464
>PRK10941 hypothetical protein; Provisional
Probab=29.96 E-value=5.6e+02 Score=25.39 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=32.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004244 505 LIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK 563 (766)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 563 (766)
+-.+|.+.++++.|++..+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4445556666666666666666543 334444444444556666666666656555543
No 465
>PRK12798 chemotaxis protein; Reviewed
Probab=29.60 E-value=7e+02 Score=26.38 Aligned_cols=157 Identities=14% Similarity=0.107 Sum_probs=68.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHH
Q 004244 547 EGDIPQALRLHDEMIQKGFLPDVVTYSVLINGL-NKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAAL 625 (766)
Q Consensus 547 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l 625 (766)
.|+.+++.+.+..+.....++....|-.|+.+- ....+..+|+++|+...- ..|-...=.+.+. ..
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALR-----------Rs 191 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALR-----------RS 191 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHH-----------Hh
Confidence 355556666655555444445555555555443 234455566666655432 1222211111110 01
Q ss_pred HhhhhhcCCHHHHHHHHHHHHh-CCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHh
Q 004244 626 LKGFCMKGLMNEADRVFELMLQ-RNHMPNEAV-YDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT--VTIIVLVKALHT 701 (766)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~ 701 (766)
+-.....|+.+++..+-..-.. ....|-..- +..+..++.+.++-.. .+.+..++.. +.|+. ..|..+...-..
T Consensus 192 i~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali 269 (421)
T PRK12798 192 LFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSF-MDPERQRELYLRIARAALI 269 (421)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHh-cCchhHHHHHHHHHHHHHH
Confidence 1233455666665554444332 111221111 1122222222221111 1113333321 23332 566666666666
Q ss_pred cCChHHHHHHHHHHHHc
Q 004244 702 AGMNEELSQVIENILRS 718 (766)
Q Consensus 702 ~g~~~~A~~~~~~~~~~ 718 (766)
.|+.+-|...-++++..
T Consensus 270 ~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 270 DGKTELARFASERALKL 286 (421)
T ss_pred cCcHHHHHHHHHHHHHh
Confidence 77777777777666655
No 466
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=29.56 E-value=7.3e+02 Score=26.59 Aligned_cols=125 Identities=12% Similarity=0.146 Sum_probs=69.1
Q ss_pred HHHHHhcCChhhHH-HHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 004244 226 IRGFCGVGDLEMGL-RFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGR 304 (766)
Q Consensus 226 i~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 304 (766)
|.--...|++..|- ++++-+....-.|+.+..-+.| +...|.++.+.+.+...... +.....+..++++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 33334456665554 3444444433344444433333 34567777777776654322 22345566677777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004244 305 LKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNG 354 (766)
Q Consensus 305 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 354 (766)
+++|..+-+-|....++ ++.......-..-..|-++++.-.+..+...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77777777777766554 33322222222334566677777777666543
No 467
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.96 E-value=1.9e+02 Score=22.34 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=10.1
Q ss_pred hcCCChhHHHHHHHHHHH
Q 004244 735 HKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 735 ~~~g~~~~A~~~~~~m~~ 752 (766)
+..-.|++|..+-++|..
T Consensus 50 ~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 50 GVGSQWERARRLQQKMKT 67 (79)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 334456666666666554
No 468
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.99 E-value=5.9e+02 Score=25.04 Aligned_cols=26 Identities=23% Similarity=0.117 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHH
Q 004244 532 PDEFTYTTLINAYCTEGDIPQALRLH 557 (766)
Q Consensus 532 p~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (766)
.++.....+...|.+.|++.+|+..|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35566677777778888877777655
No 469
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.73 E-value=2.4e+02 Score=28.62 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=67.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHhC-CCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc
Q 004244 627 KGFCMKGLMNEADRVFELMLQR-NHMP--NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTA 702 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~ 702 (766)
+-|.+..++..|...|.+-+.. .-.| +.+.|+.-..+....|++..|+.=..+.+. +.|+. ..+..-+.++...
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHHHHH
Confidence 6688999999999999887743 2334 467787777777788999999998888774 45665 5555566777788
Q ss_pred CChHHHHHHHHHHHHc
Q 004244 703 GMNEELSQVIENILRS 718 (766)
Q Consensus 703 g~~~~A~~~~~~~~~~ 718 (766)
.++++|..+.+..+..
T Consensus 167 e~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 8888888888776654
No 470
>PRK09857 putative transposase; Provisional
Probab=27.34 E-value=3.5e+02 Score=27.22 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=13.6
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 004244 729 VLVEINHKEGNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 729 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 756 (766)
.+++-+.+.|.-+++.++.++|...|..
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444444444444455555555555543
No 471
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=27.30 E-value=6.6e+02 Score=25.38 Aligned_cols=190 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHhC-CCCcCHHHHHHHHHHHHHcC-Chh---HHHHH-HHH---------HhhCCCCCC--
Q 004244 226 IRGFCGVGDLEMGLRFFSEMEKN-NCLANVVTYNTLIDGYCKLG-RID---DAFKL-LRD---------MGLKGIEPN-- 288 (766)
Q Consensus 226 i~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g-~~~---~A~~l-~~~---------m~~~g~~p~-- 288 (766)
+-++++.|... ...+++-+... .-.++...|..++..+.... .+. +.... |+. +..-|..++
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HHcCC-----hhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004244 289 LISYNVIINGL-CKEGR-----LKETKGILNEISRKGL----VPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPN 358 (766)
Q Consensus 289 ~~~~~~li~~~-~~~g~-----~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 358 (766)
.......++.. ....- .++|.+.|++....+. ..+......++....+.|+.+.-..+++..... .+
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TS 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---ST
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CC
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCCHHHHHHHHHH
Q 004244 359 VVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGF-SQHGFLDEAYRLLNE 419 (766)
Q Consensus 359 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~l~~~ 419 (766)
......++.+++...+.+...++++.....+..++......+.... ....-.+.+.+.+..
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 472
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.14 E-value=6.4e+02 Score=27.68 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=38.9
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 004244 624 ALLKGFCMKGLMNEADRVFELMLQRNHMP--NEAVYDIIIHGHSKVGNVQKAYDLYKKMVR 682 (766)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 682 (766)
.|+.-|.+.+++++|+.++..|-=. ..+ --...+.+.+.+.+..--++....++.++.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~-~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWN-TMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCcc-ccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4557899999999999999887521 111 223345566666676666677777777763
No 473
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=27.08 E-value=1.3e+02 Score=29.98 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 004244 220 YTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCL 251 (766)
Q Consensus 220 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 251 (766)
..|+.-|..-.+.||+++|+.++++.++.|..
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 33456777777777777777777777777644
No 474
>PHA02989 ankyrin repeat protein; Provisional
Probab=26.80 E-value=6.5e+02 Score=27.57 Aligned_cols=17 Identities=12% Similarity=-0.070 Sum_probs=10.2
Q ss_pred HHHHHHHHHhCCCCcCH
Q 004244 238 GLRFFSEMEKNNCLANV 254 (766)
Q Consensus 238 A~~~~~~m~~~g~~~~~ 254 (766)
..++.+.+.+.|..+|.
T Consensus 87 ~~~iv~~Ll~~Gadin~ 103 (494)
T PHA02989 87 IKKIVKLLLKFGADINL 103 (494)
T ss_pred HHHHHHHHHHCCCCCCC
Confidence 34566666777765543
No 475
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=26.57 E-value=4.5e+02 Score=23.15 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 432 YNALIKGHCTGGRVEDAVGVLHGM 455 (766)
Q Consensus 432 ~~~ll~~~~~~g~~~~A~~~~~~~ 455 (766)
.+.++.-....++......+++.+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 455555555555555555555554
No 476
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.18 E-value=1.3e+03 Score=28.24 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 004244 326 TYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPN----VVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLI 401 (766)
Q Consensus 326 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 401 (766)
-|...++.+-+.+-.|.+.++-...++. ++++ ..+++.+.+.....|.+-+|.+.+-+-... .........++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 3666777788888888888887776664 2222 456777788888888888877665432211 11233455666
Q ss_pred HHHHhcCCHH------------HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004244 402 NGFSQHGFLD------------EAYR-LLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVL 452 (766)
Q Consensus 402 ~~~~~~g~~~------------~A~~-l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 452 (766)
-.++..|.++ +... +++..-+.........|+.|-..+...+++.+|-.+.
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 6666666544 3333 3333333322223334565655666778887775543
No 477
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.72 E-value=3.6e+02 Score=23.00 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 004244 671 QKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIEN 714 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 714 (766)
++..++|..|..+|+-... ..|...+..+-..|++.+|..+++.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 5578889999988765544 5566778888899999999998864
No 478
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.60 E-value=5.9e+02 Score=27.61 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=19.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHH
Q 004244 295 IINGLCKEGRLKETKGILNEISRKGLVPDEVTY--NTLLNGYCKEGNLHQ 342 (766)
Q Consensus 295 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~ 342 (766)
.+...+..|. .-.++++.+.+.|..++.... .+.+...+..|+.+-
T Consensus 144 ~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~i 191 (480)
T PHA03100 144 LLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDV 191 (480)
T ss_pred HHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHH
Confidence 3444445552 112334444555554433211 223444555554443
No 479
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=25.31 E-value=1.1e+02 Score=19.63 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 726 LAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
+|..|++.-...+++++|.+-|++..
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 56667777777777777777666543
No 480
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.05 E-value=3.9e+02 Score=23.44 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=35.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004244 522 FQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQA 583 (766)
Q Consensus 522 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 583 (766)
.+.+.+.|+.++.. -..++..+.+.++.-.|.++++++.+.+...+..|...-++.+...|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444556555543 23556666666666777788887777655555555444444444444
No 481
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.84 E-value=3.8e+02 Score=27.42 Aligned_cols=64 Identities=16% Similarity=0.287 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004244 635 MNEADRVFELMLQRNHMPNE----AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALH 700 (766)
Q Consensus 635 ~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 700 (766)
.++...++..++.. .|++ -.|.+++......|.+++.+.+|++++..|-.|-...-..+++.+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35777777777763 3553 4678888999999999999999999999999987777666776655
No 482
>PRK09857 putative transposase; Provisional
Probab=23.53 E-value=5.5e+02 Score=25.82 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHCCC
Q 004244 552 QALRLHDEMIQKGF 565 (766)
Q Consensus 552 ~A~~~~~~~~~~g~ 565 (766)
++.++...|...|+
T Consensus 258 ~~~~ia~~ml~~g~ 271 (292)
T PRK09857 258 KALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHHHHHcCC
Confidence 33444444444433
No 483
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.53 E-value=9.1e+02 Score=25.70 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCc
Q 004244 583 ARTMEAKKLLLKLFYDESVPS 603 (766)
Q Consensus 583 g~~~~A~~l~~~~~~~~~~p~ 603 (766)
++.+.|+..+.+|++.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 444444555555544444443
No 484
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.33 E-value=5.5e+02 Score=28.73 Aligned_cols=91 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 364 SLINSMCKSGNLNRAMEFFDQMHVR--ELRPNEKTYTTLINGFSQHGF------LDEAYRLLNEMTKNGFMPSIVTYNAL 435 (766)
Q Consensus 364 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~~~~~~~~~l 435 (766)
+|..+|..+|++-.+.++++..... |-+.-...||..|+...+.|. .+.|.+++++..-+| |..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~---d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG---DSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC---cchHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004244 436 IKGHCTGGRVEDAVGVLHGMAR 457 (766)
Q Consensus 436 l~~~~~~g~~~~A~~~~~~~~~ 457 (766)
+.+-...-+-.-..-++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
No 485
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.01 E-value=9.3e+02 Score=25.62 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH
Q 004244 478 QELDKAFDTKREMVEKGVLPDTIT 501 (766)
Q Consensus 478 g~~~~A~~~~~~m~~~~~~p~~~~ 501 (766)
.+.+.|+..+..|.+.|..|....
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 555666666666665555544333
No 486
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=22.72 E-value=7e+02 Score=24.06 Aligned_cols=37 Identities=14% Similarity=0.393 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 004244 652 PNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT 689 (766)
Q Consensus 652 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 689 (766)
|.+.....++.. |..+++++|.+++.++-+.|+.|..
T Consensus 237 PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 237 PHPLLVKKMLQA-CLKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CChHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCCHHH
Confidence 555555555543 4567788888888888888887765
No 487
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=22.64 E-value=2.3e+02 Score=20.90 Aligned_cols=49 Identities=8% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004244 652 PNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHT 701 (766)
Q Consensus 652 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 701 (766)
|....++.++...++..-.++++..+.++...| ..+..+|..-++.+.+
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
No 488
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.60 E-value=7.7e+02 Score=27.09 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 004244 504 SLIHGLCEQRRITEACELFQEM 525 (766)
Q Consensus 504 ~li~~~~~~g~~~~A~~~~~~m 525 (766)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 4555666666666666666665
No 489
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=22.59 E-value=9.9e+02 Score=26.30 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=20.5
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004244 630 CMKGLMNEADRVFELMLQRNHMPNEA 655 (766)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~~p~~~ 655 (766)
...|+..+++..++++.+.|..|...
T Consensus 256 i~~~d~~~~~~~~~~l~~~G~~~~~~ 281 (515)
T COG2812 256 ILKGDAKEALRLINELIEEGKDPEAF 281 (515)
T ss_pred HHccCHHHHHHHHHHHHHhCcCHHHH
Confidence 34688999999999999988776543
No 490
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=22.58 E-value=1.1e+03 Score=27.03 Aligned_cols=23 Identities=4% Similarity=-0.331 Sum_probs=18.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 004244 631 MKGLMNEADRVFELMLQRNHMPN 653 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~p~ 653 (766)
..++...++.+++.+.+.|..+.
T Consensus 257 ~~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 257 INQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 34888899999999988876653
No 491
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=22.56 E-value=8.4e+02 Score=24.94 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=12.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHh
Q 004244 627 KGFCMKGLMNEADRVFELMLQ 647 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~ 647 (766)
+.+.+.|+.++|..-|++...
T Consensus 373 dlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 373 DLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 445566666666666666654
No 492
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=21.93 E-value=4.6e+02 Score=24.50 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 654 EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
....+.+++.+...|+|+.|.+.|.-++... ..|. ..|..-+..+.+.+......++++.+...
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~ 105 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLISF 105 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 3455678888888899999988888888543 3444 34555556666666555554555555443
No 493
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=21.65 E-value=9.2e+02 Score=26.57 Aligned_cols=23 Identities=4% Similarity=-0.023 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 004244 631 MKGLMNEADRVFELMLQRNHMPN 653 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~p~ 653 (766)
..|+.++|+.+++.+...|..|.
T Consensus 269 ~~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 269 IHRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 45889999999999998887664
No 494
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=21.33 E-value=1.5e+02 Score=18.22 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHH
Q 004244 670 VQKAYDLYKKMVRSGFVPHTVTII 693 (766)
Q Consensus 670 ~~~A~~~~~~m~~~~~~p~~~~~~ 693 (766)
++.|..+|++.+.. .|+..+|.
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHH
Confidence 34455555554432 34444443
No 495
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.04 E-value=4.7e+02 Score=21.41 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 004244 365 LINSMCKSGNLNRAMEFFDQM 385 (766)
Q Consensus 365 li~~~~~~g~~~~A~~~~~~m 385 (766)
++..|...|+.++|..-++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555555443
No 496
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.89 E-value=1.1e+03 Score=25.87 Aligned_cols=23 Identities=0% Similarity=-0.177 Sum_probs=18.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 004244 631 MKGLMNEADRVFELMLQRNHMPN 653 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~p~ 653 (766)
..|+.+.++.+++.+.+.|..|.
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 257 AAKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 45888889999999998887764
No 497
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=20.86 E-value=5.4e+02 Score=25.85 Aligned_cols=70 Identities=23% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCChHHH
Q 004244 274 FKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCK----------EGNLHQA 343 (766)
Q Consensus 274 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~A 343 (766)
.++++.|...++.|.-.++.-+.-.+.+.=.+.+.+.+++.+.. |..-|..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHH
Q 004244 344 LVLHA 348 (766)
Q Consensus 344 ~~~~~ 348 (766)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
No 498
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=20.71 E-value=1.5e+03 Score=27.02 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCChHHHHHHHHHHHhcCC
Q 004244 690 VTIIVLVKALHTAGMNEELSQVIENILRS-CRLSDAELAKVLVEINHKEG 738 (766)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 738 (766)
.++..-..-....|++..|.+++.++++. +-......|..+++.+...|
T Consensus 1232 K~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1232 KVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 33333334444555566666666555553 22233444444455444444
No 499
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=20.57 E-value=5.2e+02 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=14.2
Q ss_pred HhccCChHHHHHHHHHHHHcCCC
Q 004244 664 HSKVGNVQKAYDLYKKMVRSGFV 686 (766)
Q Consensus 664 ~~~~g~~~~A~~~~~~m~~~~~~ 686 (766)
+...|+++.|+++.+.+++.|..
T Consensus 58 ~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 58 LFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hhcccCHHHHHHHHHHHHHcCCC
Confidence 44666666666666666666543
No 500
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.41 E-value=1e+03 Score=25.09 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCH
Q 004244 361 TYTSLINSMCKSGNLNRAMEFFDQMHVR--ELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKN---------GFMPSI 429 (766)
Q Consensus 361 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~~~~ 429 (766)
.+.-+...|..+|+++.|++.|.+...- ...--+..|-.+|..-.-.|++.....+..+.... .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004244 430 VTYNALIKGHCTGGRVEDAVGVLHGMARKGLA------PDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYS 503 (766)
Q Consensus 430 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 503 (766)
..+..+...+.+ ++..|.+.|-......+. |...+....+.+..--++-+--+.+.+...-..+.--.....
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHH
Q 004244 504 SLIHGLCEQRRITEACELFQEMLSR-----GMSPDEFTYTTLIN 542 (766)
Q Consensus 504 ~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~l~~ 542 (766)
.++..++ .+++...+++++++... -+.|.+.+.-.+|+
T Consensus 310 ~il~~fy-~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 310 EILFKFY-SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHh-hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Done!