Query 004244
Match_columns 766
No_of_seqs 803 out of 4213
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 18:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-40 6.6E-45 374.8 42.1 506 178-735 81-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2E-40 6.7E-45 374.7 40.8 503 201-755 70-581 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.1E-30 1.1E-34 278.5 25.5 207 201-407 7-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 9.8E-30 3.4E-34 274.6 25.2 206 164-372 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-26 6.3E-31 245.1 48.2 381 332-739 7-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-25 3.7E-30 239.1 48.7 378 299-703 9-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 2E-23 6.7E-28 230.7 40.7 279 429-729 186-488 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.6E-23 5.4E-28 231.4 38.7 439 292-755 9-480 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.6E-21 5.4E-26 211.5 40.5 360 358-753 25-410 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 3.2E-21 1.1E-25 209.0 40.1 385 310-744 13-445 (450)
11 3fp2_A TPR repeat-containing p 99.9 2E-21 6.9E-26 215.9 36.9 439 253-722 24-495 (537)
12 3fp2_A TPR repeat-containing p 99.9 4.7E-21 1.6E-25 212.9 39.5 438 219-683 25-491 (537)
13 2xm6_A Protein corresponding t 99.9 2.5E-17 8.5E-22 180.2 51.6 352 323-719 38-433 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 1.8E-18 6E-23 180.9 37.9 343 358-735 2-351 (359)
15 1xi4_A Clathrin heavy chain; a 99.9 1E-15 3.5E-20 174.3 60.0 317 371-748 1088-1440(1630)
16 3ieg_A DNAJ homolog subfamily 99.9 5.6E-18 1.9E-22 177.1 39.4 298 433-755 7-337 (359)
17 2xm6_A Protein corresponding t 99.8 2.2E-16 7.6E-21 172.6 52.2 353 288-685 38-434 (490)
18 1xi4_A Clathrin heavy chain; a 99.8 1E-14 3.5E-19 166.2 61.2 534 145-753 984-1560(1630)
19 3hym_B Cell division cycle pro 99.8 4.2E-18 1.4E-22 175.8 31.6 293 427-741 20-322 (330)
20 2ooe_A Cleavage stimulation fa 99.8 2.5E-16 8.5E-21 174.1 44.7 429 277-752 2-491 (530)
21 2ooe_A Cleavage stimulation fa 99.8 9.2E-16 3.1E-20 169.5 46.6 219 411-648 255-492 (530)
22 3hym_B Cell division cycle pro 99.8 4.9E-17 1.7E-21 167.8 32.6 200 357-561 20-220 (330)
23 4g1t_A Interferon-induced prot 99.8 1.1E-16 3.7E-21 174.5 33.6 395 324-766 51-472 (472)
24 1fch_A Peroxisomal targeting s 99.8 1.2E-17 4E-22 175.5 24.4 262 467-749 67-355 (368)
25 1b89_A Protein (clathrin heavy 99.8 6.9E-18 2.4E-22 173.1 20.9 281 231-555 15-303 (449)
26 3spa_A Mtrpol, DNA-directed RN 99.8 5.6E-19 1.9E-23 194.8 10.4 122 216-337 124-249 (1134)
27 1fch_A Peroxisomal targeting s 99.8 2.4E-16 8.3E-21 165.5 27.5 303 267-594 38-355 (368)
28 4eqf_A PEX5-related protein; a 99.7 9.5E-17 3.3E-21 168.4 23.6 264 465-749 66-352 (365)
29 4g1t_A Interferon-induced prot 99.7 3.4E-15 1.2E-19 162.6 36.2 386 287-719 49-460 (472)
30 3cv0_A Peroxisome targeting si 99.7 3.4E-16 1.2E-20 161.2 26.3 261 469-750 26-312 (327)
31 1b89_A Protein (clathrin heavy 99.7 4.1E-16 1.4E-20 160.0 26.0 284 266-593 15-306 (449)
32 3spa_A Mtrpol, DNA-directed RN 99.7 3.1E-18 1.1E-22 189.0 10.9 153 251-408 124-286 (1134)
33 3mkr_A Coatomer subunit epsilo 99.7 7.5E-16 2.6E-20 155.1 27.6 278 438-746 8-287 (291)
34 4eqf_A PEX5-related protein; a 99.7 2.5E-16 8.5E-21 165.2 23.6 262 432-715 68-353 (365)
35 3mkr_A Coatomer subunit epsilo 99.7 1.4E-15 4.7E-20 153.2 26.0 256 471-755 6-266 (291)
36 3cv0_A Peroxisome targeting si 99.7 1.7E-15 5.9E-20 155.9 25.9 263 435-718 27-315 (327)
37 3uq3_A Heat shock protein STI1 99.7 2.4E-14 8.3E-19 141.6 25.0 225 464-718 5-236 (258)
38 3e4b_A ALGK; tetratricopeptide 99.6 2.6E-14 8.8E-19 153.7 25.4 371 332-751 11-419 (452)
39 2pl2_A Hypothetical conserved 99.6 2E-14 6.9E-19 138.0 22.0 198 531-751 2-212 (217)
40 3uq3_A Heat shock protein STI1 99.6 5.5E-14 1.9E-18 139.0 25.0 226 499-754 5-237 (258)
41 1ouv_A Conserved hypothetical 99.6 2.1E-12 7.2E-17 129.0 32.9 224 463-719 5-252 (273)
42 3e4b_A ALGK; tetratricopeptide 99.6 2.1E-13 7.4E-18 146.5 26.6 346 225-599 9-388 (452)
43 3u4t_A TPR repeat-containing p 99.6 3.1E-13 1.1E-17 134.9 25.0 249 466-736 5-267 (272)
44 1ouv_A Conserved hypothetical 99.6 4.2E-12 1.4E-16 126.8 33.2 224 498-754 5-252 (273)
45 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.4E-13 4.9E-18 137.5 21.0 245 476-747 17-269 (275)
46 2pl2_A Hypothetical conserved 99.6 1.9E-13 6.5E-18 131.2 20.6 198 497-716 3-212 (217)
47 3u4t_A TPR repeat-containing p 99.6 8.2E-13 2.8E-17 131.8 24.9 236 500-755 4-252 (272)
48 4e6h_A MRNA 3'-END-processing 99.5 1.3E-10 4.3E-15 129.1 44.2 445 270-756 48-573 (679)
49 2h6f_A Protein farnesyltransfe 99.5 8.5E-13 2.9E-17 137.3 25.4 248 464-736 97-365 (382)
50 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-12 5.5E-17 128.0 25.1 202 499-719 37-239 (252)
51 2q7f_A YRRB protein; TPR, prot 99.5 5.8E-13 2E-17 130.3 21.3 213 498-731 22-234 (243)
52 2ho1_A Type 4 fimbrial biogene 99.5 3.5E-12 1.2E-16 125.6 26.9 200 535-753 38-238 (252)
53 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.7E-13 1.9E-17 133.2 21.1 247 441-712 17-269 (275)
54 2vq2_A PILW, putative fimbrial 99.5 7.1E-12 2.4E-16 120.7 27.7 204 498-719 7-212 (225)
55 2vq2_A PILW, putative fimbrial 99.5 3.2E-12 1.1E-16 123.2 24.7 206 531-754 5-212 (225)
56 4e6h_A MRNA 3'-END-processing 99.5 3.2E-10 1.1E-14 125.8 43.4 441 162-648 48-570 (679)
57 2h6f_A Protein farnesyltransfe 99.5 1.2E-12 4E-17 136.2 22.1 231 499-754 97-349 (382)
58 4a1s_A PINS, partner of inscut 99.5 5.6E-13 1.9E-17 142.1 19.8 269 469-753 53-372 (411)
59 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-12 4.3E-17 127.9 20.8 204 532-755 21-224 (243)
60 3sf4_A G-protein-signaling mod 99.5 5.6E-13 1.9E-17 141.6 18.0 260 467-741 50-364 (406)
61 3ro2_A PINS homolog, G-protein 99.5 1.8E-12 6E-17 133.5 18.7 268 471-754 12-333 (338)
62 4a1s_A PINS, partner of inscut 99.4 3.2E-12 1.1E-16 136.2 20.9 205 500-719 127-373 (411)
63 3sf4_A G-protein-signaling mod 99.4 3.4E-12 1.1E-16 135.6 20.4 276 462-753 7-336 (406)
64 4abn_A Tetratricopeptide repea 99.4 2.6E-12 8.9E-17 139.0 19.5 211 514-748 83-316 (474)
65 3ulq_A Response regulator aspa 99.4 1.9E-11 6.4E-16 128.8 23.8 232 505-753 109-368 (383)
66 2ond_A Cleavage stimulation fa 99.4 8.9E-11 3E-15 119.4 27.5 238 463-720 7-272 (308)
67 3nf1_A KLC 1, kinesin light ch 99.4 2.3E-12 7.8E-17 131.2 15.4 239 499-753 27-307 (311)
68 2ond_A Cleavage stimulation fa 99.4 2.1E-10 7.3E-15 116.5 29.5 216 446-682 33-269 (308)
69 3ro2_A PINS homolog, G-protein 99.4 6.9E-12 2.4E-16 129.1 18.1 239 466-719 45-333 (338)
70 3vtx_A MAMA; tetratricopeptide 99.4 4.8E-11 1.6E-15 111.0 22.1 168 533-719 4-171 (184)
71 3ulq_A Response regulator aspa 99.4 6.6E-11 2.3E-15 124.6 23.5 163 435-597 109-292 (383)
72 3vtx_A MAMA; tetratricopeptide 99.3 2E-10 7E-15 106.7 22.9 172 428-605 4-175 (184)
73 4abn_A Tetratricopeptide repea 99.3 5.5E-11 1.9E-15 128.5 20.5 214 480-715 84-318 (474)
74 3nf1_A KLC 1, kinesin light ch 99.3 1.7E-11 6E-16 124.7 15.0 239 464-719 27-308 (311)
75 3q15_A PSP28, response regulat 99.3 3.7E-10 1.3E-14 118.5 24.9 230 505-752 107-364 (378)
76 4gyw_A UDP-N-acetylglucosamine 99.3 1.2E-10 4E-15 131.0 20.3 162 569-752 9-173 (723)
77 3as5_A MAMA; tetratricopeptide 99.3 4.7E-10 1.6E-14 104.0 20.1 166 570-754 9-174 (186)
78 1hz4_A MALT regulatory protein 99.2 1.9E-09 6.6E-14 112.8 27.0 271 438-718 23-322 (373)
79 1hz4_A MALT regulatory protein 99.2 1.5E-09 5E-14 113.8 25.7 270 468-752 18-321 (373)
80 3q15_A PSP28, response regulat 99.2 1.2E-09 4.3E-14 114.5 25.2 90 333-422 110-210 (378)
81 4i17_A Hypothetical protein; T 99.2 1.5E-09 5.2E-14 104.7 22.8 216 497-733 5-223 (228)
82 4i17_A Hypothetical protein; T 99.2 7.2E-10 2.5E-14 107.0 19.4 195 532-755 5-211 (228)
83 3edt_B KLC 2, kinesin light ch 99.2 5E-10 1.7E-14 111.8 18.7 194 545-753 12-281 (283)
84 3as5_A MAMA; tetratricopeptide 99.2 1.4E-09 4.9E-14 100.7 18.5 165 536-719 10-174 (186)
85 4gyw_A UDP-N-acetylglucosamine 99.1 1.7E-09 5.9E-14 121.6 20.4 163 534-718 9-174 (723)
86 3edt_B KLC 2, kinesin light ch 99.1 1.8E-09 6E-14 107.8 16.5 170 534-718 43-281 (283)
87 1qqe_A Vesicular transport pro 99.1 2.5E-09 8.7E-14 107.5 16.4 195 543-752 46-268 (292)
88 1qqe_A Vesicular transport pro 99.1 4.2E-09 1.5E-13 105.9 17.6 194 509-719 47-270 (292)
89 3mv2_B Coatomer subunit epsilo 99.0 6.1E-08 2.1E-12 95.4 24.5 245 437-720 21-284 (310)
90 3mv2_B Coatomer subunit epsilo 99.0 7.6E-08 2.6E-12 94.7 23.2 251 401-690 20-287 (310)
91 4ga2_A E3 SUMO-protein ligase 99.0 2.7E-09 9.1E-14 95.1 11.2 143 575-739 3-149 (150)
92 2uy1_A Cleavage stimulation fa 99.0 8.5E-07 2.9E-11 95.6 32.9 118 627-752 294-412 (493)
93 2fo7_A Synthetic consensus TPR 99.0 2.3E-08 8E-13 86.7 16.9 125 627-754 9-133 (136)
94 3qky_A Outer membrane assembly 99.0 1.8E-08 6.2E-13 99.4 18.1 192 532-743 13-251 (261)
95 2uy1_A Cleavage stimulation fa 99.0 7.3E-07 2.5E-11 96.1 31.6 355 233-647 28-412 (493)
96 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.9E-08 1.7E-12 93.8 20.1 190 534-760 4-220 (225)
97 3rjv_A Putative SEL1 repeat pr 98.9 1.2E-07 4.1E-12 90.0 21.7 176 517-719 4-198 (212)
98 3qky_A Outer membrane assembly 98.9 4E-08 1.4E-12 96.9 18.8 171 566-755 12-226 (261)
99 2pzi_A Probable serine/threoni 98.9 8.4E-09 2.9E-13 116.6 15.4 171 510-704 402-583 (681)
100 3rjv_A Putative SEL1 repeat pr 98.9 2.2E-07 7.5E-12 88.1 22.5 177 552-755 4-199 (212)
101 2fo7_A Synthetic consensus TPR 98.9 1.1E-07 3.6E-12 82.4 17.2 128 467-597 4-131 (136)
102 3urz_A Uncharacterized protein 98.9 5.9E-08 2E-12 91.9 16.6 124 627-755 62-188 (208)
103 3qou_A Protein YBBN; thioredox 98.8 6.6E-08 2.3E-12 96.7 17.2 164 568-751 116-282 (287)
104 3dra_A Protein farnesyltransfe 98.8 1.2E-06 4.1E-11 87.1 25.5 232 479-732 48-301 (306)
105 3dra_A Protein farnesyltransfe 98.8 9.6E-07 3.3E-11 87.8 24.2 223 511-753 45-287 (306)
106 3qou_A Protein YBBN; thioredox 98.8 9.6E-08 3.3E-12 95.5 17.0 169 531-717 114-283 (287)
107 4ga2_A E3 SUMO-protein ligase 98.8 1.4E-08 4.7E-13 90.4 9.5 124 627-754 5-130 (150)
108 2vsy_A XCC0866; transferase, g 98.8 7.8E-08 2.7E-12 106.8 17.7 154 582-756 2-160 (568)
109 2r5s_A Uncharacterized protein 98.8 4.9E-08 1.7E-12 89.6 13.4 76 673-750 93-170 (176)
110 3urz_A Uncharacterized protein 98.8 1.7E-07 5.9E-12 88.6 17.5 136 468-609 58-195 (208)
111 2ifu_A Gamma-SNAP; membrane fu 98.8 7.4E-08 2.5E-12 97.5 15.8 91 627-719 124-224 (307)
112 3u3w_A Transcriptional activat 98.8 1.7E-06 5.9E-11 86.7 25.2 163 575-752 81-265 (293)
113 2pzi_A Probable serine/threoni 98.8 5.8E-08 2E-12 109.8 14.7 184 475-681 402-596 (681)
114 2yhc_A BAMD, UPF0169 lipoprote 98.7 5E-07 1.7E-11 86.7 19.1 202 498-720 3-215 (225)
115 2r5s_A Uncharacterized protein 98.7 8E-08 2.8E-12 88.2 12.8 163 537-718 9-173 (176)
116 3gyz_A Chaperone protein IPGC; 98.7 6.7E-08 2.3E-12 85.6 11.5 102 651-754 32-134 (151)
117 2vsy_A XCC0866; transferase, g 98.7 1.7E-07 5.9E-12 104.0 17.4 152 548-719 3-158 (568)
118 4gco_A Protein STI-1; structur 98.7 2.5E-07 8.6E-12 79.3 14.6 103 627-733 21-124 (126)
119 4gco_A Protein STI-1; structur 98.7 1.3E-07 4.5E-12 81.1 12.6 104 650-755 8-112 (126)
120 2ifu_A Gamma-SNAP; membrane fu 98.7 1.2E-07 4.2E-12 95.8 14.2 124 627-751 84-222 (307)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.6E-07 1.6E-11 85.9 16.1 124 627-755 14-152 (213)
122 2vgx_A Chaperone SYCD; alterna 98.7 9.3E-08 3.2E-12 84.7 10.3 96 655-752 22-117 (148)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.3E-06 4.5E-11 82.7 17.8 128 573-720 10-152 (213)
124 3u3w_A Transcriptional activat 98.6 8.4E-06 2.9E-10 81.6 24.4 164 540-718 81-266 (293)
125 4f3v_A ESX-1 secretion system 98.6 1.5E-06 5.3E-11 84.2 17.8 199 511-732 18-249 (282)
126 2qfc_A PLCR protein; TPR, HTH, 98.6 3.6E-06 1.2E-10 84.4 21.4 171 571-751 77-264 (293)
127 1a17_A Serine/threonine protei 98.6 1.3E-06 4.6E-11 78.7 15.6 122 627-751 21-144 (166)
128 4f3v_A ESX-1 secretion system 98.6 6.2E-07 2.1E-11 87.0 13.8 205 546-756 18-240 (282)
129 3gw4_A Uncharacterized protein 98.6 7.5E-07 2.6E-11 83.6 14.2 157 580-752 3-175 (203)
130 3gyz_A Chaperone protein IPGC; 98.6 5.7E-07 1.9E-11 79.5 12.3 91 627-720 44-135 (151)
131 2e2e_A Formate-dependent nitri 98.6 4.1E-07 1.4E-11 83.4 11.9 127 627-756 18-147 (177)
132 2lni_A Stress-induced-phosphop 98.5 1.6E-06 5.5E-11 74.7 14.7 110 627-739 24-133 (133)
133 2c2l_A CHIP, carboxy terminus 98.5 3.6E-07 1.2E-11 91.0 11.6 192 535-753 5-199 (281)
134 2kck_A TPR repeat; tetratricop 98.5 9.9E-07 3.4E-11 73.3 12.5 103 653-757 5-110 (112)
135 1na0_A Designed protein CTPR3; 98.5 2.4E-06 8.3E-11 72.5 14.7 109 627-738 17-125 (125)
136 2vyi_A SGTA protein; chaperone 98.5 2.2E-06 7.4E-11 73.5 14.5 111 627-740 20-130 (131)
137 1p5q_A FKBP52, FK506-binding p 98.5 1.2E-06 4E-11 89.7 14.8 124 627-752 155-293 (336)
138 2qfc_A PLCR protein; TPR, HTH, 98.5 2.1E-05 7.1E-10 78.7 23.1 166 500-681 76-264 (293)
139 2xcb_A PCRH, regulatory protei 98.5 1.3E-06 4.3E-11 76.7 12.3 92 625-719 24-116 (142)
140 3upv_A Heat shock protein STI1 98.5 1.7E-06 5.9E-11 74.0 12.6 94 624-719 9-102 (126)
141 3q7a_A Farnesyltransferase alp 98.5 6.6E-05 2.3E-09 75.4 25.4 234 477-731 67-344 (349)
142 3q7a_A Farnesyltransferase alp 98.5 8.1E-05 2.8E-09 74.7 25.9 231 443-694 68-342 (349)
143 3dss_A Geranylgeranyl transfer 98.4 8.8E-05 3E-09 74.1 25.6 199 515-734 90-319 (331)
144 4gcn_A Protein STI-1; structur 98.4 1.3E-06 4.4E-11 74.9 10.6 93 625-719 14-113 (127)
145 2fbn_A 70 kDa peptidylprolyl i 98.4 3.5E-07 1.2E-11 85.7 7.6 126 627-755 46-188 (198)
146 3gw4_A Uncharacterized protein 98.4 2.6E-06 8.9E-11 79.8 12.8 157 546-718 4-176 (203)
147 3q49_B STIP1 homology and U bo 98.4 5.4E-06 1.9E-10 71.9 13.9 99 653-753 8-106 (137)
148 2vgx_A Chaperone SYCD; alterna 98.4 1.7E-06 5.9E-11 76.4 10.6 91 627-720 29-120 (148)
149 1a17_A Serine/threonine protei 98.4 1.2E-05 4.1E-10 72.3 16.4 129 465-596 14-144 (166)
150 3upv_A Heat shock protein STI1 98.4 7.1E-06 2.4E-10 70.1 13.8 100 653-754 3-102 (126)
151 3sz7_A HSC70 cochaperone (SGT) 98.4 4.1E-06 1.4E-10 75.5 12.8 98 620-720 12-110 (164)
152 1hxi_A PEX5, peroxisome target 98.4 2.5E-06 8.5E-11 72.4 10.6 96 657-754 20-115 (121)
153 1elw_A TPR1-domain of HOP; HOP 98.3 7.6E-06 2.6E-10 68.5 13.0 109 622-733 7-115 (118)
154 2c2l_A CHIP, carboxy terminus 98.3 3.1E-06 1.1E-10 84.1 12.1 194 429-647 4-198 (281)
155 1na0_A Designed protein CTPR3; 98.3 2.2E-05 7.4E-10 66.4 15.8 96 465-562 10-105 (125)
156 1elw_A TPR1-domain of HOP; HOP 98.3 1.8E-05 6E-10 66.2 14.9 101 653-755 3-103 (118)
157 4b4t_Q 26S proteasome regulato 98.3 3.4E-05 1.2E-09 82.1 20.2 167 572-752 58-244 (434)
158 2dba_A Smooth muscle cell asso 98.3 2.4E-05 8.1E-10 68.7 15.9 105 627-735 36-144 (148)
159 4gcn_A Protein STI-1; structur 98.3 6.6E-06 2.3E-10 70.4 11.5 101 654-755 8-114 (127)
160 2lni_A Stress-induced-phosphop 98.3 2.2E-05 7.5E-10 67.4 14.8 95 431-527 18-112 (133)
161 3dss_A Geranylgeranyl transfer 98.3 0.00063 2.2E-08 67.9 27.0 149 445-597 90-266 (331)
162 2xcb_A PCRH, regulatory protei 98.3 5.6E-06 1.9E-10 72.5 10.8 100 653-754 17-116 (142)
163 2hr2_A Hypothetical protein; a 98.2 8.5E-06 2.9E-10 71.2 11.7 93 657-752 14-130 (159)
164 2vyi_A SGTA protein; chaperone 98.2 2.7E-05 9.2E-10 66.4 15.1 60 501-561 48-107 (131)
165 3sz7_A HSC70 cochaperone (SGT) 98.2 2.5E-05 8.4E-10 70.3 15.4 101 653-755 10-110 (164)
166 2dba_A Smooth muscle cell asso 98.2 1.6E-05 5.4E-10 69.9 13.7 100 653-755 27-130 (148)
167 2e2e_A Formate-dependent nitri 98.2 6.3E-06 2.1E-10 75.4 11.2 121 475-598 21-144 (177)
168 1p5q_A FKBP52, FK506-binding p 98.2 3.1E-05 1E-09 79.1 16.4 130 465-596 148-292 (336)
169 3q49_B STIP1 homology and U bo 98.2 1.4E-05 4.9E-10 69.2 12.0 91 627-719 17-107 (137)
170 1wao_1 Serine/threonine protei 98.2 3.5E-06 1.2E-10 90.6 9.0 118 627-748 14-134 (477)
171 2xev_A YBGF; tetratricopeptide 98.2 2E-05 7E-10 67.3 12.3 92 625-719 8-106 (129)
172 1elr_A TPR2A-domain of HOP; HO 98.2 1.2E-05 4.2E-10 68.7 10.8 111 621-734 6-122 (131)
173 3ro3_A PINS homolog, G-protein 98.1 1.1E-05 3.6E-10 72.1 10.5 127 627-753 17-158 (164)
174 1hxi_A PEX5, peroxisome target 98.1 1.4E-05 4.8E-10 67.6 10.1 91 627-720 25-116 (121)
175 3rkv_A Putative peptidylprolyl 98.1 1.9E-05 6.4E-10 70.9 11.0 113 621-735 13-143 (162)
176 2kck_A TPR repeat; tetratricop 98.1 3E-05 1E-09 64.0 11.5 93 627-721 14-109 (112)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.9E-05 6.3E-10 84.5 12.6 123 627-753 276-415 (457)
178 3k9i_A BH0479 protein; putativ 98.1 6.5E-06 2.2E-10 69.2 7.0 89 631-720 2-92 (117)
179 3k9i_A BH0479 protein; putativ 98.1 5.8E-06 2E-10 69.6 6.6 88 666-754 2-91 (117)
180 2xev_A YBGF; tetratricopeptide 98.0 6.5E-05 2.2E-09 64.1 13.3 95 657-754 5-106 (129)
181 2if4_A ATFKBP42; FKBP-like, al 98.0 1.2E-05 4E-10 82.3 9.6 128 627-758 187-333 (338)
182 3rkv_A Putative peptidylprolyl 98.0 2.7E-05 9.3E-10 69.8 11.0 92 663-755 20-128 (162)
183 1elr_A TPR2A-domain of HOP; HO 98.0 3.7E-05 1.3E-09 65.6 11.4 101 654-755 4-110 (131)
184 4b4t_Q 26S proteasome regulato 98.0 0.00025 8.6E-09 75.2 20.1 55 627-681 143-202 (434)
185 3ro3_A PINS homolog, G-protein 98.0 4.8E-05 1.7E-09 67.7 12.1 133 571-718 11-158 (164)
186 1klx_A Cysteine rich protein B 98.0 8.8E-05 3E-09 64.3 13.2 118 628-756 4-129 (138)
187 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00011 3.8E-09 68.4 14.4 129 466-596 40-184 (198)
188 1ihg_A Cyclophilin 40; ppiase 98.0 4.3E-05 1.5E-09 78.9 12.2 117 627-746 231-363 (370)
189 3n71_A Histone lysine methyltr 98.0 3.5E-05 1.2E-09 82.2 11.6 128 627-754 317-465 (490)
190 2l6j_A TPR repeat-containing p 97.9 7.7E-06 2.6E-10 67.8 4.7 95 653-749 3-103 (111)
191 2hr2_A Hypothetical protein; a 97.9 4.1E-05 1.4E-09 66.8 9.1 91 627-719 19-132 (159)
192 1dce_A Protein (RAB geranylger 97.9 0.00033 1.1E-08 76.6 18.5 174 549-742 44-244 (567)
193 1wao_1 Serine/threonine protei 97.9 7.2E-05 2.5E-09 80.3 12.2 118 576-713 13-134 (477)
194 1na3_A Designed protein CTPR2; 97.7 0.00021 7.1E-09 56.3 10.3 84 653-738 8-91 (91)
195 2if4_A ATFKBP42; FKBP-like, al 97.7 7.3E-05 2.5E-09 76.3 9.2 90 627-720 238-330 (338)
196 2kat_A Uncharacterized protein 97.7 0.00018 6.1E-09 60.0 9.4 82 636-719 2-83 (115)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00053 1.8E-08 73.2 14.6 96 499-596 317-413 (457)
198 1ihg_A Cyclophilin 40; ppiase 97.6 0.00054 1.8E-08 70.7 13.6 140 429-590 223-362 (370)
199 2kat_A Uncharacterized protein 97.6 0.00018 6.2E-09 59.9 8.3 81 671-753 2-82 (115)
200 3n71_A Histone lysine methyltr 97.5 0.00057 2E-08 72.8 12.3 123 544-681 319-462 (490)
201 1klx_A Cysteine rich protein B 97.5 0.0043 1.5E-07 53.4 15.6 15 548-562 111-125 (138)
202 1zu2_A Mitochondrial import re 97.5 0.00014 4.8E-09 63.3 5.8 88 629-720 12-122 (158)
203 1dce_A Protein (RAB geranylger 97.5 0.0059 2E-07 66.7 20.0 173 410-587 45-244 (567)
204 1zu2_A Mitochondrial import re 97.4 0.00028 9.7E-09 61.4 7.3 89 665-755 13-122 (158)
205 3ma5_A Tetratricopeptide repea 97.4 0.00055 1.9E-08 55.3 8.6 66 653-719 6-71 (100)
206 2l6j_A TPR repeat-containing p 97.4 0.00019 6.7E-09 59.0 5.4 84 627-713 12-102 (111)
207 3ma5_A Tetratricopeptide repea 97.3 0.001 3.5E-08 53.6 8.4 55 625-681 13-68 (100)
208 3qww_A SET and MYND domain-con 97.2 0.0012 4E-08 69.1 10.2 89 630-718 309-411 (433)
209 3bee_A Putative YFRE protein; 97.2 0.0025 8.6E-08 50.3 9.7 65 653-719 5-73 (93)
210 2kc7_A BFR218_protein; tetratr 97.0 0.00099 3.4E-08 53.4 6.2 59 660-719 6-65 (99)
211 1na3_A Designed protein CTPR2; 97.0 0.0053 1.8E-07 47.8 10.5 59 468-527 13-71 (91)
212 3qwp_A SET and MYND domain-con 97.0 0.0039 1.3E-07 65.3 12.0 95 624-718 292-400 (429)
213 3qwp_A SET and MYND domain-con 96.8 0.01 3.6E-07 62.0 13.7 92 661-752 294-399 (429)
214 3ly7_A Transcriptional activat 96.8 0.012 4.2E-07 58.8 13.1 67 652-720 275-341 (372)
215 3qww_A SET and MYND domain-con 96.8 0.0033 1.1E-07 65.8 9.4 85 668-752 312-410 (433)
216 3u64_A Protein TP_0956; tetrat 96.7 0.14 4.9E-06 49.0 18.4 84 634-721 178-272 (301)
217 1pc2_A Mitochondria fission pr 96.6 0.0094 3.2E-07 51.2 9.1 89 630-720 9-102 (152)
218 1pc2_A Mitochondria fission pr 96.6 0.027 9.4E-07 48.3 11.6 86 669-755 13-102 (152)
219 3ly7_A Transcriptional activat 96.5 0.075 2.6E-06 53.2 16.2 120 634-757 214-343 (372)
220 2kc7_A BFR218_protein; tetratr 96.3 0.01 3.5E-07 47.2 7.5 61 694-755 5-66 (99)
221 3mkq_A Coatomer beta'-subunit; 96.3 0.16 5.6E-06 58.4 20.5 45 475-525 663-707 (814)
222 3mkq_A Coatomer beta'-subunit; 96.3 0.13 4.6E-06 59.1 19.7 192 473-743 608-802 (814)
223 2v5f_A Prolyl 4-hydroxylase su 96.2 0.048 1.6E-06 43.9 10.6 74 653-727 4-83 (104)
224 4h7y_A Dual specificity protei 96.1 0.044 1.5E-06 46.3 10.0 103 653-757 12-127 (161)
225 3u64_A Protein TP_0956; tetrat 96.1 0.027 9.2E-07 54.0 9.8 90 670-761 179-277 (301)
226 3bee_A Putative YFRE protein; 96.0 0.048 1.6E-06 42.8 9.4 70 686-756 3-75 (93)
227 2v5f_A Prolyl 4-hydroxylase su 95.8 0.054 1.8E-06 43.6 9.6 67 688-754 4-76 (104)
228 4ady_A RPN2, 26S proteasome re 95.7 3.8 0.00013 46.4 48.2 280 438-738 383-677 (963)
229 1nzn_A CGI-135 protein, fissio 95.1 0.15 5E-06 42.1 9.5 88 632-721 14-106 (126)
230 3ffl_A Anaphase-promoting comp 94.7 0.087 3E-06 45.5 7.3 96 659-754 25-152 (167)
231 3mkq_B Coatomer subunit alpha; 94.5 0.95 3.2E-05 39.8 13.6 97 266-383 17-113 (177)
232 1wy6_A Hypothetical protein ST 94.3 1.9 6.5E-05 35.6 14.5 63 502-565 94-156 (172)
233 1nzn_A CGI-135 protein, fissio 94.2 0.19 6.5E-06 41.4 8.1 87 668-755 15-105 (126)
234 4gns_B Protein CSD3, chitin bi 94.0 0.23 7.7E-06 55.2 10.8 122 627-751 256-398 (754)
235 1wy6_A Hypothetical protein ST 93.8 2.4 8.2E-05 35.0 16.1 84 631-720 73-156 (172)
236 3mkq_B Coatomer subunit alpha; 93.4 2.7 9.2E-05 37.0 14.5 102 227-349 13-114 (177)
237 3lvg_A Clathrin heavy chain 1; 93.3 0.0015 5.1E-08 66.6 -7.1 448 145-676 53-534 (624)
238 3o48_A Mitochondria fission 1 92.3 2.7 9.2E-05 34.7 12.0 74 649-722 35-111 (134)
239 3lvg_A Clathrin heavy chain 1; 91.6 0.0025 8.5E-08 65.0 -8.0 118 219-351 54-171 (624)
240 4b4t_P 26S proteasome regulato 91.5 8.1 0.00028 40.2 18.2 192 512-718 29-247 (445)
241 4h7y_A Dual specificity protei 91.5 1.3 4.5E-05 37.4 9.4 31 217-247 11-47 (161)
242 1y8m_A FIS1; mitochondria, unk 91.4 3.9 0.00013 34.3 12.2 73 650-722 35-110 (144)
243 1y8m_A FIS1; mitochondria, unk 91.1 4.9 0.00017 33.6 12.6 70 686-755 36-108 (144)
244 3o48_A Mitochondria fission 1 90.4 3 0.0001 34.5 10.4 71 684-754 35-108 (134)
245 2ff4_A Probable regulatory pro 90.1 4.4 0.00015 41.4 14.3 69 623-693 175-249 (388)
246 3txn_A 26S proteasome regulato 89.8 8.7 0.0003 39.0 15.8 57 660-716 105-166 (394)
247 4ady_A RPN2, 26S proteasome re 88.9 36 0.0012 38.7 44.3 313 401-738 381-720 (963)
248 4fhn_B Nucleoporin NUP120; pro 88.6 9.5 0.00032 45.4 17.6 124 626-751 906-1048(1139)
249 4gns_B Protein CSD3, chitin bi 88.2 4.8 0.00016 44.7 13.5 134 145-281 247-398 (754)
250 4b4t_P 26S proteasome regulato 88.0 27 0.00093 36.2 22.6 257 477-748 29-319 (445)
251 4fhn_B Nucleoporin NUP120; pro 87.2 14 0.00049 43.8 18.0 87 359-447 899-989 (1139)
252 1qsa_A Protein (soluble lytic 86.9 38 0.0013 36.7 25.1 117 633-752 228-347 (618)
253 2wpv_A GET4, UPF0363 protein Y 86.3 26 0.00087 34.1 19.2 80 653-752 133-216 (312)
254 3lpz_A GET4 (YOR164C homolog); 85.9 28 0.00095 34.2 21.2 80 653-752 135-215 (336)
255 2ff4_A Probable regulatory pro 85.8 2 6.8E-05 44.0 8.4 54 695-749 177-230 (388)
256 3ffl_A Anaphase-promoting comp 84.7 3.7 0.00013 35.5 8.1 106 627-734 28-165 (167)
257 2wpv_A GET4, UPF0363 protein Y 80.9 43 0.0015 32.5 21.0 26 463-488 133-158 (312)
258 1v54_E Cytochrome C oxidase po 79.5 7.9 0.00027 30.1 7.2 49 515-563 26-74 (109)
259 4b4t_R RPN7, 26S proteasome re 78.5 6 0.0002 41.1 8.8 56 625-680 137-194 (429)
260 1v54_E Cytochrome C oxidase po 77.8 12 0.00042 29.0 7.8 61 306-367 27-87 (109)
261 2p58_C Putative type III secre 77.6 22 0.00077 27.4 9.2 49 229-283 50-98 (116)
262 1qsa_A Protein (soluble lytic 76.2 92 0.0031 33.7 27.4 136 334-479 16-151 (618)
263 3lpz_A GET4 (YOR164C homolog); 75.7 63 0.0022 31.7 22.9 82 531-646 133-214 (336)
264 1zbp_A Hypothetical protein VP 75.5 8 0.00027 36.4 7.7 113 627-753 5-129 (273)
265 2uwj_G Type III export protein 73.4 22 0.00074 27.5 8.0 49 229-283 49-97 (115)
266 1zbp_A Hypothetical protein VP 73.1 19 0.00066 33.9 9.6 70 662-732 5-76 (273)
267 2p58_C Putative type III secre 72.2 22 0.00075 27.5 7.8 78 234-319 22-99 (116)
268 2y69_E Cytochrome C oxidase su 68.4 41 0.0014 27.7 9.2 63 514-577 68-130 (152)
269 2uwj_G Type III export protein 67.7 21 0.00073 27.5 6.9 78 234-319 21-98 (115)
270 2y69_E Cytochrome C oxidase su 66.9 27 0.00091 28.8 7.8 59 307-366 71-129 (152)
271 3esl_A Checkpoint serine/threo 64.9 40 0.0014 30.1 9.5 57 667-723 92-149 (202)
272 4b4t_R RPN7, 26S proteasome re 63.5 55 0.0019 33.7 12.0 59 537-595 134-194 (429)
273 3esl_A Checkpoint serine/threo 61.3 50 0.0017 29.5 9.4 58 632-689 92-150 (202)
274 3txn_A 26S proteasome regulato 59.0 1.5E+02 0.0053 29.8 26.4 93 434-526 104-208 (394)
275 3mv2_A Coatomer subunit alpha; 58.1 1.4E+02 0.0047 29.0 12.6 54 669-722 185-240 (325)
276 2qx5_A Nucleoporin NIC96; mRNA 57.5 2.2E+02 0.0074 31.0 16.1 342 294-687 157-568 (661)
277 3ltm_A Alpha-REP4; protein eng 50.0 1.4E+02 0.0047 26.5 19.5 18 322-339 124-141 (211)
278 4a1g_A Mitotic checkpoint seri 48.7 1.2E+02 0.0042 25.6 9.4 50 638-687 84-134 (152)
279 1k1a_A B-cell lymphoma 3-encod 47.6 42 0.0014 30.8 7.4 23 229-251 16-38 (241)
280 1wdy_A 2-5A-dependent ribonucl 46.3 42 0.0014 31.6 7.4 12 414-425 199-210 (285)
281 4a1g_A Mitotic checkpoint seri 45.3 1E+02 0.0035 26.1 8.4 52 671-722 82-134 (152)
282 3mkr_B Coatomer subunit alpha; 45.3 1.8E+02 0.0062 28.1 11.1 49 672-720 179-229 (320)
283 1k1a_A B-cell lymphoma 3-encod 42.9 45 0.0015 30.5 6.8 86 260-349 12-101 (241)
284 2wvi_A Mitotic checkpoint seri 42.8 1.4E+02 0.0049 25.6 9.1 53 637-689 78-131 (164)
285 2wvi_A Mitotic checkpoint seri 42.2 1.3E+02 0.0045 25.8 8.7 55 671-725 77-132 (164)
286 3eu9_A Huntingtin-interacting 41.9 28 0.00097 31.8 5.2 13 440-452 218-230 (240)
287 1wdy_A 2-5A-dependent ribonucl 40.4 62 0.0021 30.4 7.5 10 262-271 10-19 (285)
288 3kea_A K1L; tropism, ANK repea 39.6 61 0.0021 30.9 7.3 19 366-384 165-183 (285)
289 3eiq_C Programmed cell death p 39.2 2E+02 0.0069 28.5 10.8 25 292-316 57-81 (358)
290 3eiq_C Programmed cell death p 37.6 1.4E+02 0.0048 29.6 9.4 24 433-456 221-244 (358)
291 2d2s_A Exocyst complex compone 35.2 2E+02 0.0067 26.5 9.5 88 506-596 25-118 (235)
292 2d2s_A Exocyst complex compone 34.6 2E+02 0.0068 26.5 9.4 28 358-385 90-117 (235)
293 3ltm_A Alpha-REP4; protein eng 34.6 2.4E+02 0.0082 24.8 19.8 169 179-370 31-199 (211)
294 3jxi_A Vanilloid receptor-rela 33.5 27 0.00094 32.7 3.6 24 229-252 12-35 (260)
295 3kae_A CDC27, possible protein 31.6 2.5E+02 0.0087 24.2 12.0 125 576-725 9-150 (242)
296 3eu9_A Huntingtin-interacting 31.3 40 0.0014 30.7 4.3 53 365-421 180-234 (240)
297 2zu6_B Programmed cell death p 31.3 3.5E+02 0.012 26.1 10.9 68 622-690 169-238 (307)
298 3kea_A K1L; tropism, ANK repea 31.1 91 0.0031 29.6 7.0 155 225-396 65-225 (285)
299 4aez_C MAD3, mitotic spindle c 29.1 81 0.0028 28.7 5.5 52 671-722 131-183 (223)
300 4gq2_M Nucleoporin NUP120; bet 28.6 2.3E+02 0.0079 32.6 10.8 106 627-738 818-950 (950)
301 3t8k_A Uncharacterized protein 27.3 1.4E+02 0.0049 26.0 7.1 29 260-288 41-69 (186)
302 4aez_C MAD3, mitotic spindle c 26.8 1.9E+02 0.0065 26.3 7.5 52 341-392 131-183 (223)
303 2ijq_A Hypothetical protein; s 25.6 1.7E+02 0.0057 25.1 6.6 55 628-682 41-103 (161)
304 3jxi_A Vanilloid receptor-rela 25.5 38 0.0013 31.7 3.0 56 260-315 8-72 (260)
305 2r9g_A AAA ATPase, central reg 25.2 3.6E+02 0.012 23.9 10.4 55 667-722 27-86 (204)
306 3t8k_A Uncharacterized protein 24.7 2.7E+02 0.0094 24.1 8.4 27 332-358 43-69 (186)
307 2nsz_A Programmed cell death p 23.9 2.1E+02 0.0072 23.3 6.8 23 469-491 12-34 (129)
308 2ion_A PDCD4, programmed cell 23.4 3.3E+02 0.011 22.9 8.1 22 364-385 14-35 (152)
309 3aji_A 26S proteasome non-ATPa 23.1 1.8E+02 0.0061 26.0 7.2 18 262-279 11-28 (231)
310 3pvs_A Replication-associated 22.7 6.2E+02 0.021 25.8 14.1 26 476-501 267-292 (447)
311 2zu6_B Programmed cell death p 22.4 5.2E+02 0.018 24.8 10.5 67 468-535 170-238 (307)
312 3hra_A Ankyrin repeat family p 22.2 1.1E+02 0.0039 26.6 5.5 14 414-427 158-171 (201)
313 3bge_A Predicted ATPase; struc 21.5 4.3E+02 0.015 23.4 8.9 93 365-457 10-110 (201)
314 2nsz_A Programmed cell death p 20.8 3.4E+02 0.012 22.0 9.4 22 364-385 12-33 (129)
315 2xig_A Ferric uptake regulatio 20.6 3.7E+02 0.013 22.4 8.2 58 280-338 18-75 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-40 Score=374.77 Aligned_cols=506 Identities=12% Similarity=0.030 Sum_probs=359.6
Q ss_pred CCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHH
Q 004244 178 MPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTY 257 (766)
Q Consensus 178 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 257 (766)
.++...|+.++..+.+.|+ +++|..+|++|... .|+..++..++.+|.+.|++++|..+|+.+... +++..++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 153 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQ---YKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACR 153 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHH
T ss_pred HHHHHHHHHHHHHHHHccC---chHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHH
Confidence 3677788888888888874 38888888888753 567788888888888888888888888877543 5677888
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 258 NTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKE 337 (766)
Q Consensus 258 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 337 (766)
+.++.+|++.|++++|.++|+++.. +.. ...++.+.++ ...+..++..+|+.++.+|.+.
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHc
Confidence 8888888888888888888875321 110 0000001000 1123344566666777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 004244 338 GNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAM--EF-FDQMHVRELRPNEKTYTTLINGFSQHGFLDEAY 414 (766)
Q Consensus 338 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~--~~-~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 414 (766)
|++++|.++|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.
T Consensus 214 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 77777777777766653 124444554544443332222211 11 344444433444555666677777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004244 415 RLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKG 494 (766)
Q Consensus 415 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 494 (766)
++|+++.+. +++..+++.++.+|.+.|++++|..+|+++.+.+.. +..+++.++.+|.+.|++++|.++++++.+..
T Consensus 293 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 293 DYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 777777654 467777777777777777777777777777765433 66677777777777777777777777777543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004244 495 VLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSV 574 (766)
Q Consensus 495 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 574 (766)
+.+..+|..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..
T Consensus 370 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 446 (597)
T 2xpi_A 370 -PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLF 446 (597)
T ss_dssp -TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHH
T ss_pred -cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHH
Confidence 3367777777777888888888888888777653 4456777888888888888888888888877652 456777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhC----CC
Q 004244 575 LINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQR----NH 650 (766)
Q Consensus 575 li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~ 650 (766)
++.+|.+.|++++|.++|+++.+. .+.+..+|..+. ..|.+.|++++|.++|+++.+. +.
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~---------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYAL-FQYDPLLLNELG---------------VVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CCCCHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHH---------------HHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 888888888888888888888764 233566677766 7888888888888888888764 55
Q ss_pred CCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHH
Q 004244 651 MPN--EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAK 728 (766)
Q Consensus 651 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 728 (766)
.|+ ..+|..++.+|.+.|++++|++.++++.+.+ +.+..+|..++.+|...|++++|..+++++++.+ |.+...+.
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 588 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASD 588 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHH
Confidence 776 7899999999999999999999999998764 4467899999999999999999999999999998 66788888
Q ss_pred HHHHHHh
Q 004244 729 VLVEINH 735 (766)
Q Consensus 729 ~l~~~~~ 735 (766)
.++.+|.
T Consensus 589 ~l~~~~~ 595 (597)
T 2xpi_A 589 LLKRALE 595 (597)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 8887764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-40 Score=374.73 Aligned_cols=503 Identities=11% Similarity=-0.014 Sum_probs=408.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004244 201 KFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDM 280 (766)
Q Consensus 201 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 280 (766)
..+...+..+. .++...|+.++..+.+.|++++|..+|++|.+. .|+..++..++.+|.+.|++++|..+|+++
T Consensus 70 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 70 LKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 45555555443 367888999999999999999999999998854 577788888999999999999999999888
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH
Q 004244 281 GLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVV 360 (766)
Q Consensus 281 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 360 (766)
... +++..+++.++.+|++.|++++|.++|+++. |+.. ...++.+.++ ...|.+.+..
T Consensus 144 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~~~~ 201 (597)
T 2xpi_A 144 DLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIKLEAS 201 (597)
T ss_dssp CGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSSCCHHHH
T ss_pred hcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-----------cccccchhHH
Confidence 543 5788889999999999999999999888532 2210 0111111111 1234566899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCHHHHHHHHH
Q 004244 361 TYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAY--RL-LNEMTKNGFMPSIVTYNALIK 437 (766)
Q Consensus 361 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~l-~~~m~~~g~~~~~~~~~~ll~ 437 (766)
+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+...+|+.++.
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999987432 5566666665554443332222 11 555555555556667888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004244 438 GHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITE 517 (766)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 517 (766)
.|.+.|++++|.++|+.+.+. +++..+++.++.+|.+.|++++|.++|+++.+.+.. +..++..++.++.+.|++++
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHH
T ss_pred HHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999876 579999999999999999999999999999987644 77889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004244 518 ACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFY 597 (766)
Q Consensus 518 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 597 (766)
|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++..
T Consensus 358 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 358 LYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999764 667889999999999999999999999999875 245788999999999999999999999999988
Q ss_pred CCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 004244 598 DESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLY 677 (766)
Q Consensus 598 ~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 677 (766)
.+ +.+..+|..+. .+|.+.|++++|.+.|+++.+.. +.+..+|+.++.+|.+.|++++|+++|
T Consensus 436 ~~-~~~~~~~~~l~---------------~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 436 LF-QGTHLPYLFLG---------------MQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp TT-TTCSHHHHHHH---------------HHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hC-ccchHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 52 34667777777 89999999999999999999753 237899999999999999999999999
Q ss_pred HHHHHc----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 678 KKMVRS----GFVPH--TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 678 ~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
+++.+. +..|+ ..+|..++.+|.+.|++++|..+++++++.+ |.+..+|..++.+|.+.|++++|.+.++++.
T Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999865 66787 6899999999999999999999999999998 6678999999999999999999999999998
Q ss_pred HCCC
Q 004244 752 KDGL 755 (766)
Q Consensus 752 ~~~~ 755 (766)
+...
T Consensus 578 ~~~p 581 (597)
T 2xpi_A 578 AISP 581 (597)
T ss_dssp HHCT
T ss_pred hcCC
Confidence 8654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.1e-30 Score=278.49 Aligned_cols=207 Identities=15% Similarity=0.257 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC---------h
Q 004244 201 KFAEEVYNEMGKSRVSPNV-YTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGR---------I 270 (766)
Q Consensus 201 ~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 270 (766)
..+..+.+++.+.+..+.+ ..++.+|++||+.|++++|+++|++|.+.|+.||.+|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4566666777766655443 35777888888888888888888888888888888888888888876554 5
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 271 DDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEM 350 (766)
Q Consensus 271 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 350 (766)
++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 67777888887778888888888888888888888888888888887777788888888888888888888888888888
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 004244 351 VRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQH 407 (766)
Q Consensus 351 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 407 (766)
.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..++..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 877888888888888888888888888888888887777777888887777777653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=9.8e-30 Score=274.62 Aligned_cols=206 Identities=20% Similarity=0.246 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHCCCCCCHh-hHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--------
Q 004244 164 KAVNIVNLAKVHGFMPGVL-SYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGD-------- 234 (766)
Q Consensus 164 ~A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------- 234 (766)
.+..+.+.+++.+..+++. .++.+|++|++.|+ +++|+++|++|.+.|+.||.+|||+||.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~---~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGD---VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCC---HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 3445555666666555443 46777888888873 38888888888888888888888888888876654
Q ss_pred -hhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 004244 235 -LEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILN 313 (766)
Q Consensus 235 -~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 313 (766)
+++|.++|++|.+.|+.||.+|||+||.+|++.|++++|.++|++|...|+.||..||+++|.+|++.|++++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 5778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004244 314 EISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKS 372 (766)
Q Consensus 314 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 372 (766)
+|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888888888764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.8e-26 Score=245.11 Aligned_cols=381 Identities=16% Similarity=0.079 Sum_probs=265.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 004244 332 NGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLD 411 (766)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 411 (766)
..+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 34555666666666666665542 2244455555566666666666666666665542 335566666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 004244 412 EAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMV 491 (766)
Q Consensus 412 ~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 491 (766)
+|...|+++.+.. +.+..+|..+...+.+.|++++|...++.+.+..+. +...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6666666666542 223445666666677777777777777666665322 44556666667777777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 004244 492 EKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVT 571 (766)
Q Consensus 492 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 571 (766)
+.... +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..+
T Consensus 163 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 65422 56677777777777788888888877777764 4456677777788888888888888888777652 345677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCC
Q 004244 572 YSVLINGLNKQARTMEAKKLLLKLFYDESVP-SDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNH 650 (766)
Q Consensus 572 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (766)
+..+...+.+.|++++|.+.++++++. .| +...+..+. ..+.+.|++++|++.|+++.+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~---------------~~~~~~g~~~~A~~~~~~al~~~- 301 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLA---------------NALKEKGSVAEAEDCYNTALRLC- 301 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHH---------------HHHHHHSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHhhC-
Confidence 778888888888888888888888774 33 344555555 77888888888888888888752
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHH
Q 004244 651 MPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVL 730 (766)
Q Consensus 651 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 730 (766)
+++..+|..++..+.+.|++++|++.++++++.. +.+..++..++..+.+.|++++|...++++++.. |.....|..+
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~l 379 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 379 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhH
Confidence 3377888888888888999999999998887532 3345778888888889999999999999998876 5667788888
Q ss_pred HHHHhcCCC
Q 004244 731 VEINHKEGN 739 (766)
Q Consensus 731 ~~~~~~~g~ 739 (766)
+..+.+.|+
T Consensus 380 g~~~~~~~~ 388 (388)
T 1w3b_A 380 GNTLKEMQD 388 (388)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHccC
Confidence 888776653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.1e-25 Score=239.15 Aligned_cols=378 Identities=16% Similarity=0.094 Sum_probs=208.8
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 004244 299 LCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRA 378 (766)
Q Consensus 299 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 378 (766)
+.+.|++++|.+.++++.+... .+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3344445555554444444221 122333334444444555555555554444431 22444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004244 379 MEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARK 458 (766)
Q Consensus 379 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 458 (766)
.+.|+++.+.. +.+..+|..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55555554432 1133345555555555555555555555555432 122334444455555555555555555555554
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004244 459 GLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYT 538 (766)
Q Consensus 459 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 538 (766)
.+. +..+|..+...|.+.|++++|...|+++.+.+.. +...+..+...+...|++++|...+++..... +.+..++.
T Consensus 165 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 QPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 222 4555556666666666666666666666554322 45556666666666666666666666666543 33455666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhh
Q 004244 539 TLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIE 618 (766)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~ 618 (766)
.+...|.+.|++++|.+.++++.+.+ +.+..+|..+...+.+.|++++|.+.++++++. .+.+..++..+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~------- 312 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLA------- 312 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHH-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHH-------
Confidence 66666666666666666666666542 334556666666666777777777777766654 233444555554
Q ss_pred hhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 004244 619 FQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVK 697 (766)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~ 697 (766)
..+...|++++|+..++++.+.. +.+..++..++.++.+.|++++|++.++++++ ..|+ ...|..++.
T Consensus 313 --------~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 313 --------NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 381 (388)
T ss_dssp --------HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHH
T ss_pred --------HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHH
Confidence 66677777777777777776632 22566677777777777777777777777774 3444 355555655
Q ss_pred HHHhcC
Q 004244 698 ALHTAG 703 (766)
Q Consensus 698 ~~~~~g 703 (766)
.+...|
T Consensus 382 ~~~~~~ 387 (388)
T 1w3b_A 382 TLKEMQ 387 (388)
T ss_dssp HHHHTC
T ss_pred HHHHcc
Confidence 555444
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-23 Score=230.66 Aligned_cols=279 Identities=12% Similarity=-0.021 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----C--CC------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004244 429 IVTYNALIKGHCT---GGRVEDAVGVLHGMAR-----K--GL------APDVVSYSTIISGFSRSQELDKAFDTKREMVE 492 (766)
Q Consensus 429 ~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 492 (766)
...+......+.. .|++++|...++.+.+ . .. +.+..++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3334444443443 7888888888888776 3 11 12356677788888999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004244 493 KGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTY 572 (766)
Q Consensus 493 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 572 (766)
.... ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 7543 7788888889999999999999999988774 5567788888999999999999999999998763 4466788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCC-
Q 004244 573 SVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHM- 651 (766)
Q Consensus 573 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 651 (766)
..+...+...|++++|...++++.... +.+...+..+. ..+...|++++|...++++.+....
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la---------------~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFA---------------EILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 888888999999999999999988742 22344455555 7888999999999999988763211
Q ss_pred CC----HHHHHHHHHHHhc---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChH
Q 004244 652 PN----EAVYDIIIHGHSK---VGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDA 724 (766)
Q Consensus 652 p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 724 (766)
++ ..+|..++..+.. .|++++|.+.++++++.. +.+..++..++..+...|++++|...++++++.+ |.+.
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~ 483 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA-RTME 483 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-cccH
Confidence 11 3378889999999 999999999999988653 3345778889999999999999999999999987 4555
Q ss_pred HHHHH
Q 004244 725 ELAKV 729 (766)
Q Consensus 725 ~~~~~ 729 (766)
..+..
T Consensus 484 ~~~~~ 488 (514)
T 2gw1_A 484 EKLQA 488 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-23 Score=231.41 Aligned_cols=439 Identities=10% Similarity=-0.002 Sum_probs=285.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 004244 292 YNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 371 (766)
Q Consensus 292 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 371 (766)
+......+.+.|++++|...|+++.+.. |+..++..+..++.+.|++++|.+.++++.+.+ +.+..++..++.++.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555432 455555555555555555555555555555442 2244455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004244 372 SGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGV 451 (766)
Q Consensus 372 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 451 (766)
.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 5555555555555555432 233333333333333222222222222222211111111111100000000111111111
Q ss_pred HHHHHHCCC---------CCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHH
Q 004244 452 LHGMARKGL---------APDVVSYSTIISGFSR---SQELDKAFDTKREMVE-----KGV--------LPDTITYSSLI 506 (766)
Q Consensus 452 ~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~p~~~~~~~li 506 (766)
...+..... +.+...+......+.. .|++++|...++++.+ ..- ..+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111111110 1224555555555554 8999999999999988 311 12356788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004244 507 HGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTM 586 (766)
Q Consensus 507 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 586 (766)
..+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-CcCCHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999874 33888999999999999999999999999976 3556788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 004244 587 EAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSK 666 (766)
Q Consensus 587 ~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 666 (766)
+|...+++++... +.+...+..+. ..+...|++++|+..++++.+.. +.+..++..++..+..
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~---------------~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLA---------------CLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHH---------------HHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHH
Confidence 9999999998853 22344555555 78999999999999999998753 2267788999999999
Q ss_pred cCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCC
Q 004244 667 VGNVQKAYDLYKKMVRSGF-VPH----TVTIIVLVKALHT---AGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEG 738 (766)
Q Consensus 667 ~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 738 (766)
.|++++|++.++++.+... .++ ...+..++..+.. .|++++|...++++++.. +.+...+..++.+|.+.|
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 9999999999999985321 122 2388899999999 999999999999999987 567888899999999999
Q ss_pred ChhHHHHHHHHHHHCCC
Q 004244 739 NMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 739 ~~~~A~~~~~~m~~~~~ 755 (766)
++++|.+.+++..+.+.
T Consensus 464 ~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 464 DIDEAITLFEESADLAR 480 (514)
T ss_dssp CHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999888654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.6e-21 Score=211.46 Aligned_cols=360 Identities=12% Similarity=0.044 Sum_probs=253.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 358 NVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIK 437 (766)
Q Consensus 358 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~ 437 (766)
+...+..++..+.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|...|+++.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 55666667777777777777777777766552 2356666666677777777777777777766653 234556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004244 438 GHCTGGRVEDAVGVLHGMARKGLAPDV---VSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRR 514 (766)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 514 (766)
.|.+.|++++|...|+.+.+.... +. ..+..++..+.. ..+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 666666666666666666654221 22 344444333211 112233445777888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 515 ITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLK 594 (766)
Q Consensus 515 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 594 (766)
+++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+. .+.+..+|..++..+...|++++|...|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998888764 557778888888899999999999999888865 255778888888999999999999999998
Q ss_pred HHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCC
Q 004244 595 LFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPN-----EAVYDIIIHGHSKVGN 669 (766)
Q Consensus 595 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~ 669 (766)
++.. .|+.......+.... .......+...+...|++++|+..|+++.+. .|+ ...|..++.++.+.|+
T Consensus 237 ~~~~--~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 237 CLKL--DQDHKRCFAHYKQVK--KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHH--CTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHh--CCChHHHHHHHHHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCC
Confidence 8863 444433322221000 0111122347899999999999999999984 354 4578889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHH------------HHHhcC
Q 004244 670 VQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLV------------EINHKE 737 (766)
Q Consensus 670 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~~ 737 (766)
+++|++.++++++.. +.+...|..++.++...|++++|...++++++.. |.+...+..+. +.|...
T Consensus 311 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 311 PVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 999999999998653 3456889999999999999999999999999987 56677777777 334445
Q ss_pred C-----ChhHHHHHHHH-HHHC
Q 004244 738 G-----NMDAVLNVLTE-MAKD 753 (766)
Q Consensus 738 g-----~~~~A~~~~~~-m~~~ 753 (766)
| +.+++.+.+++ ..+.
T Consensus 389 g~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp CSSTTCCTTHHHHHHHHHHHHS
T ss_pred CCCccCCHHHHHHHHHHHHHHh
Confidence 5 66777888776 4443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.2e-21 Score=209.05 Aligned_cols=385 Identities=14% Similarity=0.027 Sum_probs=245.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004244 310 GILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRE 389 (766)
Q Consensus 310 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 389 (766)
..+.+..... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..++.++...|++++|...|+++.+.+
T Consensus 13 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 13 LGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344444322 2356788899999999999999999999999863 4478999999999999999999999999999875
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004244 390 LRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSI---VTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVS 466 (766)
Q Consensus 390 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 466 (766)
. .+..++..+...|.+.|++++|...|+++.+.. +.+. ..+..++..+.. ..
T Consensus 91 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~ 145 (450)
T 2y4t_A 91 M-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QR 145 (450)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HH
T ss_pred C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HH
Confidence 3 368899999999999999999999999999864 2233 556655444211 11
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 467 YSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCT 546 (766)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 546 (766)
+..+...+.+.|++++|+..++++.+... .+..++..++..|.+.|++++|...++++.+.. +.+..++..+...|..
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 12233344455555555555555554432 244555555555555566666666655555442 3345555555566666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCcH-----HhHHH
Q 004244 547 EGDIPQALRLHDEMIQKGFLPDVVTYSVL------------INGLNKQARTMEAKKLLLKLFYDESVPSD-----VIYNT 609 (766)
Q Consensus 547 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l------------i~~~~~~g~~~~A~~l~~~~~~~~~~p~~-----~~~~~ 609 (766)
.|++++|...++++.+. .+.+...+..+ ...+.+.|++++|.+.|++++.. .|+. ..+..
T Consensus 224 ~g~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKL-DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKER 300 (450)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHH
Confidence 66666666666655543 12233333333 66677778888888888777763 3432 23333
Q ss_pred HhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 004244 610 LIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT 689 (766)
Q Consensus 610 ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 689 (766)
+. ..+.+.|++++|+..++++.+.. +.+..+|..++.+|...|++++|.+.++++++ ..|+.
T Consensus 301 l~---------------~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 301 IC---------------HCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp HH---------------HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred HH---------------HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcch
Confidence 33 67777888888888888877632 22677778888888888888888888888774 34543
Q ss_pred -HHHHHHHHH------------HHhcC-----ChHHHHHHHHH-HHHcCCCC--h-------HHHHHHHHHHHhcCCChh
Q 004244 690 -VTIIVLVKA------------LHTAG-----MNEELSQVIEN-ILRSCRLS--D-------AELAKVLVEINHKEGNMD 741 (766)
Q Consensus 690 -~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~~--~-------~~~~~~l~~~~~~~g~~~ 741 (766)
..+..+..+ +...| +.+++.+.+++ +++..|.. + ...+..+..+|...|+.+
T Consensus 363 ~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 363 QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 444444422 22333 56777888886 55554221 1 235666777777777766
Q ss_pred HHH
Q 004244 742 AVL 744 (766)
Q Consensus 742 ~A~ 744 (766)
++.
T Consensus 443 ~r~ 445 (450)
T 2y4t_A 443 MRK 445 (450)
T ss_dssp GC-
T ss_pred HHH
Confidence 543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2e-21 Score=215.86 Aligned_cols=439 Identities=12% Similarity=0.026 Sum_probs=301.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 253 NVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLN 332 (766)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 332 (766)
....+..+...+.+.|++++|.+.|+++.... +.+..+|..+...|.+.|++++|.+.++++.+... .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34677888888888999999999999887764 23677888888888889999999999998887542 35677888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCCH
Q 004244 333 GYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVREL--RPNEKTYTTLINGFSQHGFL 410 (766)
Q Consensus 333 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~ 410 (766)
.+...|++++|...|+ .... .|+ .....+..+...+...+|...++++..... .+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 8888999999998886 3322 222 222234455566667788888888865411 11111223344455566666
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHH
Q 004244 411 DEAYRLLNEMTKNGFMPSIV-TYNALIKGHCTG--------GRVEDAVGVLHGMARKGLAPD-------VVSYSTIISGF 474 (766)
Q Consensus 411 ~~A~~l~~~m~~~g~~~~~~-~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li~~~ 474 (766)
+.+...+...... .+... ....+...+... |++++|..+++.+.+.... + ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHH
Confidence 6665554433221 22222 233333333322 3788888888888876433 2 23466666778
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004244 475 SRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQAL 554 (766)
Q Consensus 475 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (766)
...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 88888899999998888764 457778888888888899999999998888764 556778888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCC
Q 004244 555 RLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGL 634 (766)
Q Consensus 555 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~ 634 (766)
..++++.+.. +.+...+..+...+...|++++|.+.+++++... +.+...+..+. ..+...|+
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~---------------~~~~~~g~ 393 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFA---------------EILTDRGD 393 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH---------------HHHHHTTC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH---------------HHHHHhCC
Confidence 9988888752 3456778888888888899999999988887742 22334455544 77888899
Q ss_pred HHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhcc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004244 635 MNEADRVFELMLQRNHM-----PNEAVYDIIIHGHSKV----------GNVQKAYDLYKKMVRSGFVPHTVTIIVLVKAL 699 (766)
Q Consensus 635 ~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 699 (766)
+++|...++++.+.... .....+......+.+. |++++|+..++++++.. +.+...+..++..+
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLK 472 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999888888753211 0122244555667777 88899999988888653 33457788888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC
Q 004244 700 HTAGMNEELSQVIENILRSCRLS 722 (766)
Q Consensus 700 ~~~g~~~~A~~~~~~~~~~~~~~ 722 (766)
...|++++|...++++++..+..
T Consensus 473 ~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHhccHHHHHHHHHHHHHhCCCc
Confidence 88899999999999988887433
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=4.7e-21 Score=212.85 Aligned_cols=438 Identities=11% Similarity=0.025 Sum_probs=303.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 004244 219 VYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIING 298 (766)
Q Consensus 219 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 298 (766)
...+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|.+.++++.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4556667777788888888888888887754 4467778888888888888888888888877654 2356677777788
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCCHH
Q 004244 299 LCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNG--LSPNVVTYTSLINSMCKSGNLN 376 (766)
Q Consensus 299 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~ 376 (766)
+...|++++|...|+.+ .. .|+.. ...+..+...+...+|...++.+.... ..+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 88888888888888533 21 22221 222334455555667777777775431 0001111123344455566666
Q ss_pred HHHHHHHHHHHCCCCCCHh-HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHH
Q 004244 377 RAMEFFDQMHVRELRPNEK-TYTTLINGFS--------QHGFLDEAYRLLNEMTKNGFMPS-------IVTYNALIKGHC 440 (766)
Q Consensus 377 ~A~~~~~~m~~~~~~~~~~-~~~~li~~~~--------~~g~~~~A~~l~~~m~~~g~~~~-------~~~~~~ll~~~~ 440 (766)
.+...+...... .+... ....+...+. ..|++++|..+++++.+... .+ ..++..+...+.
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHH
Confidence 655544433222 11211 2222222222 12478888888888887532 12 224666677888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004244 441 TGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACE 520 (766)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 520 (766)
..|++++|...++.+.+.. |+...+..+...|...|++++|...++++.+.... +..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 8999999999999998863 45788888999999999999999999999887543 67889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004244 521 LFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDES 600 (766)
Q Consensus 521 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 600 (766)
.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++++...
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~- 408 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE- 408 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-
Confidence 999998874 456778889999999999999999999999876 35567788899999999999999999999987642
Q ss_pred CCcHH-hHHHHhhhhchhhhhhHHHHHhhhhhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 004244 601 VPSDV-IYNTLIENCTNIEFQNVAALLKGFCMK----------GLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGN 669 (766)
Q Consensus 601 ~p~~~-~~~~ll~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 669 (766)
|+.. .+..+. .+..+...+... |++++|+..|+++.+.. +.+..++..++.+|.+.|+
T Consensus 409 -~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 409 -EVQEKIHVGIG---------PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp -HHCSSCSSTTH---------HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred -CcchhhHHHHH---------HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 1110 000000 000111456666 99999999999999853 2378889999999999999
Q ss_pred hHHHHHHHHHHHHc
Q 004244 670 VQKAYDLYKKMVRS 683 (766)
Q Consensus 670 ~~~A~~~~~~m~~~ 683 (766)
+++|.+.++++++.
T Consensus 478 ~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 478 IDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999965
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=2.5e-17 Score=180.21 Aligned_cols=352 Identities=13% Similarity=0.026 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH
Q 004244 323 DEVTYNTLLNGYCK----EGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCK----SGNLNRAMEFFDQMHVRELRPNE 394 (766)
Q Consensus 323 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~ 394 (766)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 33444444444444 455555555555555442 34445555555555 555555555555555543 34
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 004244 395 KTYTTLINGFSQ----HGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCT----GGRVEDAVGVLHGMARKGLAPDVVS 466 (766)
Q Consensus 395 ~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 466 (766)
..+..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|...|+...+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444445555554 455555555555555543 34444445555544 455666666666655542 4555
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004244 467 YSTIISGFSR----SQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCE----QRRITEACELFQEMLSRGMSPDEFTYT 538 (766)
Q Consensus 467 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 538 (766)
+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5555555555 566666666666665553 44555555555554 566666666666665543 334445
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 004244 539 TLINAYCT----EGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQ-----ARTMEAKKLLLKLFYDESVPSDVIYNT 609 (766)
Q Consensus 539 ~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~l~~~~~~~~~~p~~~~~~~ 609 (766)
.+...|.. .++.++|.+.+++..+.| +...+..+...|... +++++|.+.+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 55555555 566666666666666543 344555555555554 66666776666666543 1222222
Q ss_pred HhhhhchhhhhhHHHHHhhhhhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHH
Q 004244 610 LIENCTNIEFQNVAALLKGFCMKG---LMNEADRVFELMLQRNHMPNEAVYDIIIHGHSK----VGNVQKAYDLYKKMVR 682 (766)
Q Consensus 610 ll~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 682 (766)
+. ..|...| +.++|++.|++..+.| ++..+..+...|.. .+++++|++.|++..+
T Consensus 334 lg---------------~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 334 LG---------------AIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HH---------------HHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HH---------------HHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 22 3344434 5666777777766643 55566666666666 6677777777777665
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 004244 683 SGFVPHTVTIIVLVKALHT----AGMNEELSQVIENILRSC 719 (766)
Q Consensus 683 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 719 (766)
.+ +...+..+...+.. .++.++|..+++++.+.+
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 43 34555566666665 667777777777777665
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.8e-18 Score=180.94 Aligned_cols=343 Identities=11% Similarity=0.042 Sum_probs=235.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 358 NVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIK 437 (766)
Q Consensus 358 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~ 437 (766)
|+..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566677777777777777777777777653 2356677777777777777777777777776653 234566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004244 438 GHCTGGRVEDAVGVLHGMARKGLA--PDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRI 515 (766)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 515 (766)
.+...|++++|...++.+.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777665220 12222322211100 11122345667778888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 516 TEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKL 595 (766)
Q Consensus 516 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 595 (766)
++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888887764 556777778888888888888888888888775 3556777888888888888888888888888
Q ss_pred HhCCCCCcHHh-HHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCh
Q 004244 596 FYDESVPSDVI-YNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNE----AVYDIIIHGHSKVGNV 670 (766)
Q Consensus 596 ~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~ 670 (766)
.+. .|+... +..+. ... .......+...+...|++++|...++++.+.... +. ..+..++.++.+.|++
T Consensus 215 ~~~--~~~~~~~~~~~~-~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYK-QVK--KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHH--CTTCHHHHHHHH-HHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred Hhh--CccchHHHHHHH-HHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence 764 333222 21110 000 0111112236788999999999999999974322 33 2355688899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHh
Q 004244 671 QKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINH 735 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 735 (766)
++|++.++++++.. +.+...+..++..+...|++++|...++++++.. |.+...+..+..+..
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 99999999998752 3456888999999999999999999999999998 556666666666554
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1e-15 Score=174.27 Aligned_cols=317 Identities=14% Similarity=0.159 Sum_probs=173.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004244 371 KSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVG 450 (766)
Q Consensus 371 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 450 (766)
..|++++|.++.++.. +..+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555544331 3444555555555555555555555332 244444555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004244 451 VLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGM 530 (766)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 530 (766)
.+....+.. ++....+.++.+|++.+++++..... . .++...|..+...|...|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 555444432 12222223455555555544322221 1 123344444555555555555555555543
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 004244 531 SPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTL 610 (766)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l 610 (766)
..|..+...|++.|++++|.+.+++. .+..+|..+..++...|++..|........ .+...
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~de---- 1282 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADE---- 1282 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHH----
Confidence 14555555555555555555555444 133555555555555555555554443221 11222
Q ss_pred hhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cCChHHHHHHHHHHHHcCCCC-
Q 004244 611 IENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSK--VGNVQKAYDLYKKMVRSGFVP- 687 (766)
Q Consensus 611 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~p- 687 (766)
+..++..|.+.|.+++|+.+++..+... +-....|+-+..+|++ -++..+++++|..-. .++|
T Consensus 1283 -----------Leeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~ 1348 (1630)
T 1xi4_A 1283 -----------LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKV 1348 (1630)
T ss_pred -----------HHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchH
Confidence 2344488999999999999998887643 2256677667666665 456677777776543 3333
Q ss_pred -----CHHHHHHHHHHHHhcCChHHHHHHHH-------------HHHHcCCCChHHHHHHHHHHHhcCC-----------
Q 004244 688 -----HTVTIIVLVKALHTAGMNEELSQVIE-------------NILRSCRLSDAELAKVLVEINHKEG----------- 738 (766)
Q Consensus 688 -----~~~~~~~l~~~~~~~g~~~~A~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~g----------- 738 (766)
+...|..++-.|.+.|+++.|...+- ..+. ...++..|...+..|...+
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l 1426 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVL 1426 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHh
Confidence 34678889999999999999983222 2222 2456788888888888776
Q ss_pred ----ChhHHHHHHH
Q 004244 739 ----NMDAVLNVLT 748 (766)
Q Consensus 739 ----~~~~A~~~~~ 748 (766)
+.+.+.+++.
T Consensus 1427 ~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1427 SPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhcCChHHHHHHHH
Confidence 6677766665
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=5.6e-18 Score=177.08 Aligned_cols=298 Identities=12% Similarity=0.072 Sum_probs=205.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 433 NALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQ 512 (766)
Q Consensus 433 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 512 (766)
..+...+...|++++|...++.+.+..+. +..++..+...+...|++++|...++++.+.... +...+..+...+...
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHc
Confidence 33334444444444444444444433211 3344444444444444444444444444443211 334444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCC---CCHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 513 RRITEACELFQEMLSRGMS---PDEFTY------------TTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLIN 577 (766)
Q Consensus 513 g~~~~A~~~~~~m~~~~~~---p~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 577 (766)
|++++|...++++.+.. + .+...+ ..+...+...|++++|.+.++++.+. .+.+...+..+..
T Consensus 85 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELRELRAE 162 (359)
T ss_dssp TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 55555555555444432 1 122222 23367889999999999999999976 3567889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHH
Q 004244 578 GLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAV 656 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 656 (766)
.+...|++++|.+.+++++.. .+.+...+..+. ..+...|++++|...++++.+.. | +...
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la---------------~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~ 224 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKL-KSDNTEAFYKIS---------------TLYYQLGDHELSLSEVRECLKLD--QDHKRC 224 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHH---------------HHHHHHTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHhhC--ccchHH
Confidence 999999999999999999885 233455555555 88999999999999999999743 4 4444
Q ss_pred HH------------HHHHHHhccCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 657 YD------------IIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-----VTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 657 ~~------------~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
+. .++..+.+.|++++|++.++++.+.. |+. ..+..++..+...|++++|...++++++..
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 43 23677899999999999999998653 443 235567889999999999999999999987
Q ss_pred CCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 720 RLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 720 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
|.+...+..++.++...|++++|.+.++++.+...
T Consensus 303 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 303 -PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred -cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 66788999999999999999999999999988753
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=2.2e-16 Score=172.62 Aligned_cols=353 Identities=11% Similarity=0.023 Sum_probs=228.0
Q ss_pred CHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCh
Q 004244 288 NLISYNVIINGLCK----EGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCK----EGNLHQALVLHAEMVRNGLSPNV 359 (766)
Q Consensus 288 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~ 359 (766)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444444444444 455555555555555542 34444455555555 555666666666555543 44
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 004244 360 VTYTSLINSMCK----SGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQ----HGFLDEAYRLLNEMTKNGFMPSIVT 431 (766)
Q Consensus 360 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~ 431 (766)
..+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 455555555555 556666666666665543 44555555555554 556666666666666654 4555
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004244 432 YNALIKGHCT----GGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSR----SQELDKAFDTKREMVEKGVLPDTITYS 503 (766)
Q Consensus 432 ~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 503 (766)
+..+...|.. .++.++|...|+...+.+ +...+..+...|.. .++.++|...|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566666655 666777777777666653 44556666666654 667777777777776654 455566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004244 504 SLIHGLCE----QRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTE-----GDIPQALRLHDEMIQKGFLPDVVTYSV 574 (766)
Q Consensus 504 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~~~~~ 574 (766)
.+...+.. .++.++|...|++..+.| +...+..+...|... ++.++|...+++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 66666666 677888888888777654 445666677777766 78888888888887764 4566666
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhh----cCCHHHHHHHHHHHHh
Q 004244 575 LINGLNKQA---RTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCM----KGLMNEADRVFELMLQ 647 (766)
Q Consensus 575 li~~~~~~g---~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 647 (766)
+...|...| +.++|++.|++..+.+ +...+..+. ..|.. .+++++|...|++..+
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg---------------~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLG---------------NALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHH---------------HHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHH---------------HHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 777776655 6788888888887753 344444444 55655 7888999999988888
Q ss_pred CCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCC
Q 004244 648 RNHMPNEAVYDIIIHGHSK----VGNVQKAYDLYKKMVRSGF 685 (766)
Q Consensus 648 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 685 (766)
.+ ++..+..+...|.+ .++.++|.+.|+++.+.+.
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 64 56777888888887 7889999999999887653
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1e-14 Score=166.23 Aligned_cols=534 Identities=13% Similarity=0.134 Sum_probs=361.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHH
Q 004244 145 SSAVIDLVVKSYSHLNMIDKAVNIVNLAKVHG--FMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTY 222 (766)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 222 (766)
++.-....+++|...|.+.+|+++++.....+ +.-+....|.++....+... .+..+..++.... ..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~----~Rv~eyI~kLd~~-------d~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADR----TRVMEYINRLDNY-------DA 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhCh----hhHHHHHHHhhhc-------cH
Confidence 56667889999999999999999999988432 22355678888888888753 4555555554321 23
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 004244 223 NVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKE 302 (766)
Q Consensus 223 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 302 (766)
.-+...+...|.+++|..+|++... .....+.++. ..|++++|.++.++.. +..+|..+..++.+.
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 4477888899999999999999732 2333344443 6789999999998763 467899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004244 303 GRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFF 382 (766)
Q Consensus 303 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 382 (766)
|++++|.+.|.+. -|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999664 477788889999999999999999999877754 44444556999999999998644432
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004244 383 DQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAP 462 (766)
Q Consensus 383 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 462 (766)
. .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 346677888999999999999999999985 37999999999999999999999877 3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 463 DVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLIN 542 (766)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 542 (766)
+..+|..+-.+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++..+... +-....|+-+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 67899999999999999999988766432 366778899999999999999999998887654 444556777777
Q ss_pred HHHhc--CChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCCc
Q 004244 543 AYCTE--GDIPQALRLHDEMIQKGFLP------DVVTYSVLINGLNKQARTMEAKKLLLKLFYD-----------ESVPS 603 (766)
Q Consensus 543 ~~~~~--g~~~~A~~~~~~~~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----------~~~p~ 603 (766)
.|++. ++..++.++|..-.. +++ +...|..++-.|.+.|+++.|...+-+-... ....+
T Consensus 1323 LyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n 1400 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN 1400 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccccc
Confidence 77653 556666666654332 222 5678999999999999999998433222110 01222
Q ss_pred HHhHHHHhhhhchhh---hh----------hHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 004244 604 DVIYNTLIENCTNIE---FQ----------NVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNV 670 (766)
Q Consensus 604 ~~~~~~ll~~~~~~~---~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 670 (766)
...|...+.-+-... +. .....+..+.+.|++.-+..+++.+...+ +...-..+.+.|....++
T Consensus 1401 ~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n---~~~Vneal~el~ieeed~ 1477 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDY 1477 (1630)
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhc---chhhhHHHHHHhcCccch
Confidence 333322221111000 00 01123344455555555555555544322 223334455555555554
Q ss_pred HHHHHHHH------HH-HHcCCCC-CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Q 004244 671 QKAYDLYK------KM-VRSGFVP-HTVTIIVLVKALH-TAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMD 741 (766)
Q Consensus 671 ~~A~~~~~------~m-~~~~~~p-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 741 (766)
+.-..-.+ .+ +...+.- +..-+..++..+. +.|++++|.+.+.+.- .|...++...+.|+.+
T Consensus 1478 ~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dAm~~a~~S~d~e 1548 (1630)
T 1xi4_A 1478 QALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDAMQYASESKDTE 1548 (1630)
T ss_pred HHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHHHHHHHHcCCHH
Confidence 32221111 11 0001111 1122344444444 4488888887765532 2334455556666666
Q ss_pred HHHHHHHHHHHC
Q 004244 742 AVLNVLTEMAKD 753 (766)
Q Consensus 742 ~A~~~~~~m~~~ 753 (766)
.+.+++.-..+.
T Consensus 1549 ~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1549 LAEELLQWFLQE 1560 (1630)
T ss_pred HHHHHHHHHHhc
Confidence 666655555444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=4.2e-18 Score=175.82 Aligned_cols=293 Identities=10% Similarity=-0.014 Sum_probs=213.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 427 PSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLI 506 (766)
Q Consensus 427 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 506 (766)
.+...+..+...+...|++++|..+++.+.+.... +...+..++..+...|++++|...++++.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 34445555666666667777777777776665332 4445555666667777777777777777765432 556677777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004244 507 HGLCEQR-RITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQART 585 (766)
Q Consensus 507 ~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 585 (766)
..+...| ++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 7788888887777664 4456677777778888888888888888777652 33456666677778888888
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCC--------CCCCHHHH
Q 004244 586 MEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRN--------HMPNEAVY 657 (766)
Q Consensus 586 ~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~ 657 (766)
++|.+.+++.+... +.+...+..+. ..+...|++++|...++++.+.. .+....+|
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~---------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVG---------------VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHH---------------HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHH
Confidence 88888888887642 22344455544 77888888888888888877521 12346788
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHH-hc
Q 004244 658 DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEIN-HK 736 (766)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 736 (766)
..++.++.+.|++++|++.++++++.. +.+...+..++..+...|++++|..+++++++.. |.+...+..++.++ ..
T Consensus 240 ~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 240 NNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHH
Confidence 999999999999999999999998653 3355788899999999999999999999999987 66788888899888 56
Q ss_pred CCChh
Q 004244 737 EGNMD 741 (766)
Q Consensus 737 ~g~~~ 741 (766)
.|+.+
T Consensus 318 ~g~~~ 322 (330)
T 3hym_B 318 IGDSE 322 (330)
T ss_dssp TTC--
T ss_pred hCchh
Confidence 66644
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.5e-16 Score=174.10 Aligned_cols=429 Identities=11% Similarity=0.090 Sum_probs=225.5
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004244 277 LRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLS 356 (766)
Q Consensus 277 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 356 (766)
+++..... +-|...|..++. +.+.|++++|..+|+++.+.- +-+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 34444432 236778888888 478899999999999998853 3356778888999999999999999999998763
Q ss_pred CChHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-CHhHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 004244 357 PNVVTYTSLINSM-CKSGNLNRAME----FFDQMHVR-ELRP-NEKTYTTLINGFSQ---------HGFLDEAYRLLNEM 420 (766)
Q Consensus 357 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~l~~~m 420 (766)
|++..|..++... ...|++++|.+ +|++.... |..| +...|...+..... .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5777777777533 34677776665 66666543 4333 45677777766554 67888899999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH------HCC
Q 004244 421 TKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMV------EKG 494 (766)
Q Consensus 421 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~ 494 (766)
.+....+....|..........|. ..+.. ++. .+.++++.|..+++++. +..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 873111112233332221100110 00000 000 01223334443333311 110
Q ss_pred ---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cC
Q 004244 495 ---VLPD--------TITYSSLIHGLCEQ----RRI----TEACELFQEMLSRGMSPDEFTYTTLINAYCT-------EG 548 (766)
Q Consensus 495 ---~~p~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-------~g 548 (766)
+.|+ ...|...+...... ++. +.+..+|++.+... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 1222 12333333221111 111 24455555555542 3344555555555443 45
Q ss_pred ChH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH--HhHHHHhhhhchhhh
Q 004244 549 DIP-------QALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSD--VIYNTLIENCTNIEF 619 (766)
Q Consensus 549 ~~~-------~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~--~~~~~ll~~~~~~~~ 619 (766)
+++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|++++.. .|+. ..|....
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~-------- 363 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYM-------- 363 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHH--------
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHH--------
Confidence 554 55666655554212334555555555555566666666666665552 3321 2344333
Q ss_pred hhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004244 620 QNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHG-HSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKA 698 (766)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 698 (766)
..+.+.|++++|.++|++..+.. +.+...|...+.. +...|++++|..+|+++++.. +.+...|..++..
T Consensus 364 -------~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 364 -------KFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDY 434 (530)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred -------HHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44445555666666666655531 1122222221111 223556666666666655431 1233555555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC---ChHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 699 LHTAGMNEELSQVIENILRSCRL---SDAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
+.+.|+.++|..++++++...+. .....|...+......|+.+.+.++.+++.+
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666654311 1133455555555555666666655555544
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=9.2e-16 Score=169.52 Aligned_cols=219 Identities=11% Similarity=0.066 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 004244 411 DEAYRLLNEMTKNGFMPSIVTYNALIKGHCT-------GGRVE-------DAVGVLHGMARKGLAPDVVSYSTIISGFSR 476 (766)
Q Consensus 411 ~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 476 (766)
+++..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46778888888752 4467788888877765 78887 899999999863234468899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHH
Q 004244 477 SQELDKAFDTKREMVEKGVLPDT-ITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINA-YCTEGDIPQAL 554 (766)
Q Consensus 477 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~ 554 (766)
.|++++|..+|+++.+.... +. ..|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|+.++|.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 99999999999999986322 33 588888888899999999999999998863 3333333332222 34689999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCc--HHhHHHHhhhhchhhhhhHHHHHhhhhh
Q 004244 555 RLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDES-VPS--DVIYNTLIENCTNIEFQNVAALLKGFCM 631 (766)
Q Consensus 555 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~p~--~~~~~~ll~~~~~~~~~~~~~l~~~~~~ 631 (766)
.+|+..++. .+.+...|..++..+.+.|+.++|..+|++.+.... .|+ ...|...+ .....
T Consensus 412 ~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~---------------~~e~~ 475 (530)
T 2ooe_A 412 KIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL---------------AFESN 475 (530)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH---------------HHHHH
Confidence 999999876 345688999999999999999999999999988632 232 33555555 66677
Q ss_pred cCCHHHHHHHHHHHHhC
Q 004244 632 KGLMNEADRVFELMLQR 648 (766)
Q Consensus 632 ~g~~~~A~~~~~~~~~~ 648 (766)
.|+.+.+..+++++.+.
T Consensus 476 ~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTA 492 (530)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 89999999999998863
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=4.9e-17 Score=167.76 Aligned_cols=200 Identities=12% Similarity=0.017 Sum_probs=104.3
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 357 PNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALI 436 (766)
Q Consensus 357 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll 436 (766)
.+...+..++..+...|++++|.++|+++.+... .+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3445555566666666666666666666655432 234445555555666666666666666665542 22444555555
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004244 437 KGHCTGG-RVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRI 515 (766)
Q Consensus 437 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 515 (766)
..+...| ++++|...++.+.+.... +...|..+...+...|++++|...++++.+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 5555555 555666665555554322 3444555555555555555555555555544222 233344444455555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 516 TEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMI 561 (766)
Q Consensus 516 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 561 (766)
++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55555555554442 3334444444455555555555555554444
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.1e-16 Score=174.48 Aligned_cols=395 Identities=13% Similarity=-0.005 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-
Q 004244 324 EVTYNTLLNGYCKEGNLHQALVLHAEMVRN--------GLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVR-----E- 389 (766)
Q Consensus 324 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~- 389 (766)
...|+.|...+...|++++|++.|++.++. .-+....+|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456777888888888888888888776542 11224567777888888888888888888776542 0
Q ss_pred CC-CCHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCC
Q 004244 390 LR-PNEKTYTTLINGFSQ--HGFLDEAYRLLNEMTKNGFMPSIVTYNALIKG---HCTGGRVEDAVGVLHGMARKGLAPD 463 (766)
Q Consensus 390 ~~-~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~~~~~ 463 (766)
.. ....++..+..++.. .+++++|...|++..+.. +.+...+..+... +...++.++|++.+++..+.... +
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 01 123445555444444 345777888887777653 2233344443333 33456667777777777665332 4
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004244 464 VVSYSTIISGFSR----SQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTT 539 (766)
Q Consensus 464 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 539 (766)
...+..+...+.. .++.++|.+.+++....... +..++..+...+...|++++|...+++..+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 5555555444333 35566777777776665432 55667777777777777777777777777653 344555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhh
Q 004244 540 LINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEF 619 (766)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 619 (766)
+...|...+... .... .. .........+..++|...+++..... +.+...+..+.
T Consensus 287 lg~~y~~~~~~~---------~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg-------- 341 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNLR-EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILA-------- 341 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHH--------
T ss_pred HHHHHHHHHHHh---------hhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHH--------
Confidence 555543221111 0000 00 00001112234677888888877642 22233444444
Q ss_pred hhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004244 620 QNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNE--AVYDIIIH-GHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLV 696 (766)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 696 (766)
..|...|++++|+..|+++++....|.. ..+..+.. .+...|++++|++.|++.++ +.|+.....
T Consensus 342 -------~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~--- 409 (472)
T 4g1t_A 342 -------SLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKE--- 409 (472)
T ss_dssp -------HHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHH---
T ss_pred -------HHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHH---
Confidence 7899999999999999999985433321 12333333 34578999999999999985 356653322
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCCCCCCCCC
Q 004244 697 KALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLPNSGRSTYGQ 766 (766)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 766 (766)
+..+.+..++++.++.+ |.++.+|..|+.+|...|++++|++.+++..+.|..-....+|.|+
T Consensus 410 ------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 410 ------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp ------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred ------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 22345567788888887 6678889999999999999999999999999999888888888885
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1.2e-17 Score=175.53 Aligned_cols=262 Identities=13% Similarity=0.026 Sum_probs=171.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 467 YSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCT 546 (766)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 546 (766)
+..+...+.+.|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...|..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444322 134444444444445555555555555444432 3344444444455555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHH----------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHHhHHH
Q 004244 547 EGDIPQALRLHDEMIQKGFLPDVVTY----------------SVLINGLNKQARTMEAKKLLLKLFYDESVP-SDVIYNT 609 (766)
Q Consensus 547 ~g~~~~A~~~~~~~~~~g~~p~~~~~----------------~~li~~~~~~g~~~~A~~l~~~~~~~~~~p-~~~~~~~ 609 (766)
.|++++|.+.++++.+.. +.+...+ ..+.. +...|++++|...+++++...... +...+..
T Consensus 145 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 555555555555544431 1111111 12233 338889999999999988742211 3556666
Q ss_pred HhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 004244 610 LIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT 689 (766)
Q Consensus 610 ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 689 (766)
+. ..+...|++++|+..++++.+.. +.+..+|..++..+.+.|++++|++.++++++.. +.+.
T Consensus 223 l~---------------~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 285 (368)
T 1fch_A 223 LG---------------VLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYI 285 (368)
T ss_dssp HH---------------HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HH---------------HHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 65 78889999999999999988742 2267889999999999999999999999998653 3446
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----------hHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004244 690 VTIIVLVKALHTAGMNEELSQVIENILRSCRLS----------DAELAKVLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (766)
..+..++..+...|++++|...++++++..+.. ...+|..++.+|...|++++|..++++
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 788899999999999999999999999875322 167899999999999999999988764
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=6.9e-18 Score=173.06 Aligned_cols=281 Identities=12% Similarity=0.137 Sum_probs=96.9
Q ss_pred hcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 004244 231 GVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKG 310 (766)
Q Consensus 231 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 310 (766)
+.|++++|.++++++. +..+|..|+.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4555666666666662 2235666666666666666666666442 355566666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004244 311 ILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVREL 390 (766)
Q Consensus 311 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 390 (766)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55555542 2345556666666666666666665553 245556666666666666666666666654
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 391 RPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTI 470 (766)
Q Consensus 391 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 470 (766)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|...... +...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 25666666666666666666666665 2556666666666666666666443332 11233334456
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 004244 471 ISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQ--RRITEACELFQEMLSRGMSP------DEFTYTTLIN 542 (766)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~ 542 (766)
+..|.+.|++++|+.+++...... .-....|+.|.-.|++- ++..+.++.|..- .+++| +...|..+.-
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHH
Confidence 666667777777777666665443 22344555555555443 3333333333311 12222 3445666777
Q ss_pred HHHhcCChHHHHH
Q 004244 543 AYCTEGDIPQALR 555 (766)
Q Consensus 543 ~~~~~g~~~~A~~ 555 (766)
.|.+.++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 7777777777665
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=5.6e-19 Score=194.77 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh---CCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHH
Q 004244 216 SPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEK---NNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISY 292 (766)
Q Consensus 216 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 292 (766)
.--..|||++|++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||++||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33466888888888888888888888877653 477888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 293 NVIINGLCKEGRL-KETKGILNEISRKGLVPDEVTYNTLLNGYCKE 337 (766)
Q Consensus 293 ~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 337 (766)
|++|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888888888874 67788888888888888888888877666554
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.4e-16 Score=165.45 Aligned_cols=303 Identities=12% Similarity=-0.029 Sum_probs=154.5
Q ss_pred cCChhHHHH-HHHHHhhCCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004244 267 LGRIDDAFK-LLRDMGLKGI---EPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQ 342 (766)
Q Consensus 267 ~g~~~~A~~-l~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 342 (766)
.|++++|.+ .+++...... ..+...+..+...+.+.|++++|...|+++.+... .+..++..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 366666666 6654433211 11234566666677777777777777777776532 245566667777777777777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004244 343 ALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTK 422 (766)
Q Consensus 343 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 422 (766)
|...++++.+.. +.+..++..+...+...|++++|.+.|+++...... +...+..+... .. .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h--
Confidence 777777776653 335666777777777777777777777777665322 12111111000 00 0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004244 423 NGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAP-DVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTIT 501 (766)
Q Consensus 423 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 501 (766)
..+. ..+.. +..+...|++++|...++.+.+..... +..++..+...|.+.|++++|...++++..... .+..+
T Consensus 179 --~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~ 253 (368)
T 1fch_A 179 --AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLL 253 (368)
T ss_dssp ----------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred --hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHH
Confidence 0000 00001 111124455555555555554432211 345555555555555555555555555554422 23455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----------CCCHHH
Q 004244 502 YSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGF----------LPDVVT 571 (766)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----------~p~~~~ 571 (766)
+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+... +....+
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 5555555555566666666665555542 33455555555666666666666666655554210 001455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 004244 572 YSVLINGLNKQARTMEAKKLLLK 594 (766)
Q Consensus 572 ~~~li~~~~~~g~~~~A~~l~~~ 594 (766)
|..+..++...|++++|..++.+
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhCChHhHHHhHHH
Confidence 66666666666666666655543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=9.5e-17 Score=168.45 Aligned_cols=264 Identities=12% Similarity=-0.015 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 465 VSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAY 544 (766)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 544 (766)
..+..+...+.+.|++++|...|+++.+.... +..+|..+...+...|++++|...|+++.+.. +.+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 33555555666666666666666666554322 45566666666666666666666666666553 34455666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHHhHHHHhh
Q 004244 545 CTEGDIPQALRLHDEMIQKGFLPD-----------VVTYSVLINGLNKQARTMEAKKLLLKLFYDESV-PSDVIYNTLIE 612 (766)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~~g~~p~-----------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-p~~~~~~~ll~ 612 (766)
...|++++|...++++.+. .|+ ...+..+...+...|++++|.+.+++++..... ++...+..+.
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~- 220 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG- 220 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH-
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH-
Confidence 6666666666666666653 121 223344577788889999999999998875221 1456666666
Q ss_pred hhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHH
Q 004244 613 NCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTI 692 (766)
Q Consensus 613 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 692 (766)
..|...|++++|+..++++.+.. +.+..+|..++.+|.+.|++++|++.++++++.. +.+..++
T Consensus 221 --------------~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 284 (365)
T 4eqf_A 221 --------------VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSR 284 (365)
T ss_dssp --------------HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred --------------HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHH
Confidence 78888999999999999988753 2368889999999999999999999999998652 3346788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------hHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004244 693 IVLVKALHTAGMNEELSQVIENILRSCRLS-----------DAELAKVLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (766)
..++..+...|++++|...++++++..+.. ....|..++.++...|+.+.|.+..++
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 889999999999999999999998875321 256788999999999999988887664
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=3.4e-15 Score=162.59 Aligned_cols=386 Identities=11% Similarity=-0.030 Sum_probs=252.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----
Q 004244 287 PNLISYNVIINGLCKEGRLKETKGILNEISRK-----G--LVP-DEVTYNTLLNGYCKEGNLHQALVLHAEMVRN----- 353 (766)
Q Consensus 287 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 353 (766)
.....||.+...+...|++++|++.|++..+. + ..| ...+|+.+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34667999999999999999999999987652 1 123 4578999999999999999999999987752
Q ss_pred C-CC-CChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCC
Q 004244 354 G-LS-PNVVTYTSLINSMCKS--GNLNRAMEFFDQMHVRELRPNEKTYTTLING---FSQHGFLDEAYRLLNEMTKNGFM 426 (766)
Q Consensus 354 g-~~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~ 426 (766)
+ .. ....++..+..++.+. +++++|.+.|++..+..+. +...+..+... +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 11 1345666666666554 5799999999999887422 45555555544 345677889999999988764 3
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004244 427 PSIVTYNALIKGHCT----GGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITY 502 (766)
Q Consensus 427 ~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 502 (766)
.+..++..+...+.. .|+.++|...+++...... .+..++..+...|...|++++|...+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 355666665555544 4678899999999888654 37888999999999999999999999999987543 56677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 503 SSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQ 582 (766)
Q Consensus 503 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 582 (766)
..+...|...+... .... . ..........+..+.|...++...+.. +.+..++..+...+...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 77766654321111 1110 0 001111112234677888888877652 44556777888889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHH--hHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004244 583 ARTMEAKKLLLKLFYDESVPSDV--IYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDII 660 (766)
Q Consensus 583 g~~~~A~~l~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 660 (766)
|++++|.+.|++.+.....+... .+..+.. -.....|+.++|+..|++.++ +.|+......
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~- 410 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN--------------FQLYQMKCEDKAIHHFIEGVK--INQKSREKEK- 410 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH--------------HHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH-
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--------------HHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH-
Confidence 99999999999988753332221 1111110 134567899999999999988 4454332221
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 661 IHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
..+.+.+++++.++.. +.+..+|..++..+...|++++|++.|+++++.+
T Consensus 411 --------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 411 --------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp --------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred --------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2234455666666443 4456788899999999999999999999999886
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=3.4e-16 Score=161.19 Aligned_cols=261 Identities=9% Similarity=-0.040 Sum_probs=169.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004244 469 TIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEG 548 (766)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 548 (766)
.+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 3334444444444444444444443221 33444444444444455555555554444432 333444444445555555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHH-------------H-HH-HHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhh
Q 004244 549 DIPQALRLHDEMIQKGFLPDVVTYSV-------------L-IN-GLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIEN 613 (766)
Q Consensus 549 ~~~~A~~~~~~~~~~g~~p~~~~~~~-------------l-i~-~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~ 613 (766)
++++|.+.++++.+.. +.+...+.. + .. .+...|++++|.+.+++++... +.+...+..+.
T Consensus 104 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la-- 179 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG-- 179 (327)
T ss_dssp CHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH--
Confidence 5555555555544431 111111111 1 22 3667888899999999888742 22445555555
Q ss_pred hchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004244 614 CTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTII 693 (766)
Q Consensus 614 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 693 (766)
..+...|++++|.+.++++.+.. +.+..+|..++..+...|++++|++.++++++.. +.+..++.
T Consensus 180 -------------~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 244 (327)
T 3cv0_A 180 -------------VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMY 244 (327)
T ss_dssp -------------HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred -------------HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 78889999999999999988753 2367888999999999999999999999988653 34567888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------hHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSCRLS-----------DAELAKVLVEINHKEGNMDAVLNVLTEM 750 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 750 (766)
.++..+...|++++|...++++++..+.. ....+..++.++.+.|++++|..++++.
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 89999999999999999999999886332 6788899999999999999999887653
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=4.1e-16 Score=160.00 Aligned_cols=284 Identities=15% Similarity=0.155 Sum_probs=132.0
Q ss_pred HcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004244 266 KLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALV 345 (766)
Q Consensus 266 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 345 (766)
+.|++++|.+.++++.. ..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 56889999999999842 348999999999999999999999653 577789999999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004244 346 LHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKNGF 425 (766)
Q Consensus 346 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 425 (766)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777664 4567888999999999999999998884 367789999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004244 426 MPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSL 505 (766)
Q Consensus 426 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 505 (766)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 36889999999999999999999888 278999999999999999999966555422 244445578
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 004244 506 IHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTE--GDIPQALRLHDEMIQKGFLP------DVVTYSVLIN 577 (766)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~g~~p------~~~~~~~li~ 577 (766)
+..|.+.|++++|..+++..+... +-....|+-|.-+|++- ++..+.++.|..- .+++| +...|..++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988665 55567788887777754 4455555544321 12233 4567888888
Q ss_pred HHHhcCCHHHHHHHHH
Q 004244 578 GLNKQARTMEAKKLLL 593 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~ 593 (766)
.|.+.++++.|...+-
T Consensus 291 ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 291 LYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHH
Confidence 8888888888877543
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=188.95 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=126.9
Q ss_pred CcCHHHHHHHHHHHHHcCChhHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 004244 251 LANVVTYNTLIDGYCKLGRIDDAFKLLRDMGL---KGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTY 327 (766)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 327 (766)
..-..|||+||++||+.|++++|.++|++|.+ +|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33567999999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhHHHHH
Q 004244 328 NTLLNGYCKEGNL-HQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPN------EKTYTTL 400 (766)
Q Consensus 328 ~~li~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~l 400 (766)
+++|+++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+.+-++ ..+++ ..+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~----~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK----AVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH----HHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH----HHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 789999999999999999999999987665543333 33333 2233333 4445556
Q ss_pred HHHHHhcC
Q 004244 401 INGFSQHG 408 (766)
Q Consensus 401 i~~~~~~g 408 (766)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666544
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=7.5e-16 Score=155.11 Aligned_cols=278 Identities=14% Similarity=0.113 Sum_probs=200.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004244 438 GHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITE 517 (766)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 517 (766)
-....|++.+|+...+........+.......+..+|...|+++.|+..++. .-.|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445688888888776654432221123445567788888888888876644 234567778888888888888888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004244 518 ACELFQEMLSRGMSP-DEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLF 596 (766)
Q Consensus 518 A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 596 (766)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888888765434 455667777888888999999888876 4577888888888899999999999999988
Q ss_pred hCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 004244 597 YDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDL 676 (766)
Q Consensus 597 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 676 (766)
.. .|+....+... ..+..+...|++++|..+|+++.+. .+.+...|+.++.++.+.|++++|.+.
T Consensus 158 ~~--~p~~~~~~l~~------------a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 158 DQ--DEDATLTQLAT------------AWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HH--CTTCHHHHHHH------------HHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hh--CcCcHHHHHHH------------HHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 74 45543222111 0113444568999999999999976 334888899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 004244 677 YKKMVRSGFVPHTVTIIVLVKALHTAGMNEE-LSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNV 746 (766)
Q Consensus 677 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 746 (766)
++++++.. +-+..++..++..+...|+.++ +..+++++++.+ |.++.+ .+...+.+.++++..-
T Consensus 223 l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 223 LQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHH----HHHHHHHHHHHHHHHH
Confidence 99988653 3355788889989999999876 578999999988 444433 2334455555555443
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=2.5e-16 Score=165.23 Aligned_cols=262 Identities=10% Similarity=-0.040 Sum_probs=174.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 432 YNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCE 511 (766)
Q Consensus 432 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 511 (766)
+..+...+.+.|++++|...|+.+.+... .+..++..+...|.+.|++++|+..|+++.+... .+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 44445555555555555555555554432 2455555555666666666666666665555432 245556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 004244 512 QRRITEACELFQEMLSRGMSP----------DEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLP--DVVTYSVLINGL 579 (766)
Q Consensus 512 ~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~li~~~ 579 (766)
.|++++|...++++.+.. +. ....+..+...+...|++++|.+.++++.+.. +. +..++..+...+
T Consensus 146 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHH
Confidence 666666666666665532 11 12233445777888889999999998888763 22 678888888889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 004244 580 NKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYD 658 (766)
Q Consensus 580 ~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 658 (766)
...|++++|.+.++++++. .+.+...|..+. ..|...|++++|+..|+++.+. .| +..+|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~---------------~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 285 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV-RPEDYSLWNRLG---------------ATLANGDRSEEAVEAYTRALEI--QPGFIRSRY 285 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHhc--CCCchHHHH
Confidence 9999999999999988874 223455666666 7888999999999999999874 34 688899
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCC---CC--------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 659 IIIHGHSKVGNVQKAYDLYKKMVRSGF---VP--------HTVTIIVLVKALHTAGMNEELSQVIENI 715 (766)
Q Consensus 659 ~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (766)
.++.+|.+.|++++|++.++++++... .| +...|..+..++...|+.+.|....++.
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999999999999999999999874310 11 2577889999999999999988877653
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.4e-15 Score=153.16 Aligned_cols=256 Identities=10% Similarity=0.044 Sum_probs=205.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004244 471 ISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDI 550 (766)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 550 (766)
+.-....|+++.|+..++........+.......+..+|...|++++|...++. . -+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 344567899999999888765432221123556678899999999999987754 2 367788899999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhh
Q 004244 551 PQALRLHDEMIQKGFLP-DVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGF 629 (766)
Q Consensus 551 ~~A~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~ 629 (766)
++|++.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..+. ..+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~---------------~~~ 140 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV---------------QIL 140 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH---------------HHH
Confidence 99999999999876444 566777788999999999999999987 34555566655 889
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 004244 630 CMKGLMNEADRVFELMLQRNHMPNEAVY---DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 706 (766)
.+.|++++|.+.++++.+.. |+.... ..++..+...|++++|+.+|+++++. .+.+...+..++.++.+.|+++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999853 543211 23344455679999999999999976 3566788999999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhH-HHHHHHHHHHCCC
Q 004244 707 ELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDA-VLNVLTEMAKDGL 755 (766)
Q Consensus 707 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~ 755 (766)
+|...++++++.+ |.++.++..++..+...|+.++ +.++++++.+.+.
T Consensus 218 eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 218 AAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999998 6778889999999999999976 5688888887654
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=1.7e-15 Score=155.87 Aligned_cols=263 Identities=9% Similarity=-0.054 Sum_probs=167.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004244 435 LIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRR 514 (766)
Q Consensus 435 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 514 (766)
+...+...|++++|..+++.+.+.... +...+..+...+...|++++|...++++.+... .+..++..+...+...|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcCC
Confidence 333444444444444444444443221 344444444445555555555555554444321 134444555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 515 ITEACELFQEMLSRGMSPDEFTYTTL--------------IN-AYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGL 579 (766)
Q Consensus 515 ~~~A~~~~~~m~~~~~~p~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 579 (766)
+++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 555555555555432 1111122111 22 3667788888888888888752 44677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004244 580 NKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDI 659 (766)
Q Consensus 580 ~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 659 (766)
...|++++|.+.++++.... +.+...+..+. ..+...|++++|...++++.+.. +.+..++..
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~---------------~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 245 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELR-PDDAQLWNKLG---------------ATLANGNRPQEALDAYNRALDIN-PGYVRVMYN 245 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 88999999999988887742 22344555555 78888999999999999988743 236788889
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 660 IIHGHSKVGNVQKAYDLYKKMVRSGFVP-----------HTVTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
++.++.+.|++++|.+.++++++..... +...+..++.++...|+.++|..+++++++.
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988542111 3578888999999999999999988766543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.4e-14 Score=141.60 Aligned_cols=225 Identities=13% Similarity=0.097 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 004244 464 VVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGM--SPD----EFTY 537 (766)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~ 537 (766)
...+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|...++++.+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455666666666777777777776666655 4566666666666666777777766666665320 111 3555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-HhHHHHhhhhch
Q 004244 538 TTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSD-VIYNTLIENCTN 616 (766)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~-~~~~~ll~~~~~ 616 (766)
..+...+...|++++|.+.+++..+. .|+. ..+.+.|++++|.+.++++... .|+. ..+..+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~----- 146 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEG----- 146 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHH-----
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHH-----
Confidence 66666666666666666666666653 2332 2344455566666666666552 2222 2222222
Q ss_pred hhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004244 617 IEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLV 696 (766)
Q Consensus 617 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 696 (766)
..+...|++++|+..++++.+.. +.+..+|..++.++.+.|++++|++.++++++.. +.+...+..++
T Consensus 147 ----------~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~ 214 (258)
T 3uq3_A 147 ----------KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKA 214 (258)
T ss_dssp ----------HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ----------HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHH
Confidence 55556666666666666665532 1245556666666666666666666666665432 22345555566
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 004244 697 KALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
..+...|++++|...++++++.
T Consensus 215 ~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 215 TAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 6666666666666666666554
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=2.6e-14 Score=153.72 Aligned_cols=371 Identities=13% Similarity=0.011 Sum_probs=170.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 004244 332 NGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNL---NRAMEFFDQMHVRELRPNEKTYTTLINGFSQHG 408 (766)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 408 (766)
..+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|.+.|++..+. +...+..|...+...|
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 33444555555555555555443 222333344444444544 5555555555432 3333444444333333
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 004244 409 -----FLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVE---DAVGVLHGMARKGLAPDVVSYSTIISGFSRSQEL 480 (766)
Q Consensus 409 -----~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 480 (766)
+.++|...|++..+.|... .+..|...|...+..+ ++.+.+......| +......+...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 4555555555555544221 3333444444333222 2333333333332 233444445555554433
Q ss_pred ----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CC
Q 004244 481 ----DKAFDTKREMVEKGVLPDTITYSSLIHGLCEQR---RITEACELFQEMLSRGMSPDEFTYTTLINAYCTE----GD 549 (766)
Q Consensus 481 ----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----g~ 549 (766)
+++..+++..... ++..+..|...|...| +.++|++.|++..+.| +++...+..|...|... ++
T Consensus 158 ~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 158 DQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp GGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred ccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 3333333332221 2225555666666666 6666666666666665 44544444555555443 56
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHH
Q 004244 550 IPQALRLHDEMIQKGFLPDVVTYSVLING-L--NKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALL 626 (766)
Q Consensus 550 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~ 626 (766)
+++|.+.|++.. .| +...+..+... + ...+++++|.+.|++..+.| +...+..+.
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg--------------- 290 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLG--------------- 290 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHH---------------
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH---------------
Confidence 666666666665 22 34444445444 2 34666777777777666544 222333332
Q ss_pred hhhhhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004244 627 KGFCMKG-----LMNEADRVFELMLQRNHMPNEAVYDIIIHGHSK----VGNVQKAYDLYKKMVRSGFVPHTVTIIVLVK 697 (766)
Q Consensus 627 ~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 697 (766)
..|. .| ++++|++.|++.. .| ++..+..+...|.. ..++++|+++|++..+.|. ......|..
T Consensus 291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~ 362 (452)
T 3e4b_A 291 KLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQ 362 (452)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHH
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHH
Confidence 3333 33 6777777776665 22 55556666666654 3367777777777765542 223444444
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 698 ALHT----AGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 698 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
.|.. ..+.++|..+++++.+.+ .++.......+......++.++|.++.++-.
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4442 346777777777777766 2222222222222233445556666555433
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=2e-14 Score=138.05 Aligned_cols=198 Identities=15% Similarity=0.014 Sum_probs=137.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHH
Q 004244 531 SPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPS-DVIYNT 609 (766)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ 609 (766)
+++...+..+...+.+.|++++|...+++.++. -+.+...+..+...+.+.|++++|+..+++.++. .|+ ...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 344455556666666666666666666666654 2345556666666666666666666666666553 333 223333
Q ss_pred HhhhhchhhhhhHHHHHhhhhhc-----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHH
Q 004244 610 LIENCTNIEFQNVAALLKGFCMK-----------GLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLY 677 (766)
Q Consensus 610 ll~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 677 (766)
+. ..+... |++++|+..+++.++. .| +...|..++.++...|++++|++.+
T Consensus 79 lg---------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 79 LS---------------EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASL 141 (217)
T ss_dssp HH---------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HH---------------HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33 445555 9999999999999984 45 6888999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 678 KKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 678 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
+++++.. .+...+..++.++...|++++|+..++++++.+ |.+...+..++.++.+.|++++|.+.+++..
T Consensus 142 ~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 142 KQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999776 677889999999999999999999999999998 6778888999999999999999999988654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.5e-14 Score=138.97 Aligned_cols=226 Identities=10% Similarity=0.009 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHH
Q 004244 499 TITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKG--FLPD----VVTY 572 (766)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~----~~~~ 572 (766)
...+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|.+.+++..+.. ..++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456667777777788888888888777765 566777777777778888888888777776531 1112 4667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC
Q 004244 573 SVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP 652 (766)
Q Consensus 573 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 652 (766)
..+...+...|++++|.+.+++.... .|+. ..+...|++++|...++++... .|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~----------------------~~~~~~~~~~~a~~~~~~~~~~--~~ 136 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA----------------------DILTKLRNAEKELKKAEAEAYV--NP 136 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH----------------------HHHHHHHHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh----------------------HHHHHHhHHHHHHHHHHHHHHc--Cc
Confidence 77777777788888888888777763 3332 3445566777788877777764 34
Q ss_pred -CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004244 653 -NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLV 731 (766)
Q Consensus 653 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 731 (766)
+...+..++..+...|++++|++.++++++.. +.+...+..++..+...|++++|...++++++.. +.+...+..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~ 214 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKA 214 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHH
Confidence 55667777777777888888888888777543 3345667777777777888888888888877776 45567777777
Q ss_pred HHHhcCCChhHHHHHHHHHHHCC
Q 004244 732 EINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 732 ~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
.++.+.|++++|.+.+++..+..
T Consensus 215 ~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 215 TAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC
Confidence 88888888888887777766543
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=2.1e-12 Score=128.99 Aligned_cols=224 Identities=8% Similarity=-0.051 Sum_probs=153.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004244 463 DVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCE----QRRITEACELFQEMLSRGMSPDEFTYT 538 (766)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 538 (766)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55666677777777777777777777777633 45666667777777 777777777777777765 566667
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 004244 539 TLINAYCT----EGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNK----QARTMEAKKLLLKLFYDESVPSDVIYNTL 610 (766)
Q Consensus 539 ~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~p~~~~~~~l 610 (766)
.+...|.. .+++++|++.+++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777654 56667777777777 777777777777777643 23333333
Q ss_pred hhhhchhhhhhHHHHHhhhhh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHH
Q 004244 611 IENCTNIEFQNVAALLKGFCM----KGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSK----VGNVQKAYDLYKKMVR 682 (766)
Q Consensus 611 l~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 682 (766)
. ..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.+++..+
T Consensus 153 g---------------~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 153 G---------------SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp H---------------HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred H---------------HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 3 45555 677777777777777653 45566667777777 7777777777777765
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 004244 683 SGFVPHTVTIIVLVKALHT----AGMNEELSQVIENILRSC 719 (766)
Q Consensus 683 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 719 (766)
.+ | ...+..+...+.. .++.++|..+++++.+.+
T Consensus 215 ~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 215 LE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 43 2 4555666666666 677777777777777766
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=2.1e-13 Score=146.52 Aligned_cols=346 Identities=10% Similarity=0.009 Sum_probs=184.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh---hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 004244 225 LIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRI---DDAFKLLRDMGLKGIEPNLISYNVIINGLCK 301 (766)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 301 (766)
+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|.+.|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455556666666666666666654 233344444455555555 6666666666542 33444444443433
Q ss_pred cC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 004244 302 EG-----RLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLH---QALVLHAEMVRNGLSPNVVTYTSLINSMCKSG 373 (766)
Q Consensus 302 ~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 373 (766)
.+ ++++|...|++..+.|... .+..|...|...+..+ ++.+.+......| +......|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 33 5566777777666654322 4444555555444332 2333444443333 3445556666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHH
Q 004244 374 NLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHG---FLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTG----GRVE 446 (766)
Q Consensus 374 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~----g~~~ 446 (766)
.++++......+.+.-...+...+..|...|...| +.++|++.|++..+.| .++...+..+...|... ++.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 44433333222222111123336666777777777 6777777777777766 33444444555555443 5777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 004244 447 DAVGVLHGMARKGLAPDVVSYSTIISG-F--SRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQR-----RITEA 518 (766)
Q Consensus 447 ~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~A 518 (766)
+|..+|+... . -+...+..|... | ...++.++|++.|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777766 3 244555555555 3 45677777777777777765 5566666666665 44 77778
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 004244 519 CELFQEMLSRGMSPDEFTYTTLINAYCT----EGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNK----QARTMEAKK 590 (766)
Q Consensus 519 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~ 590 (766)
.+.|++.. . .+...+..|...|.. ..+.++|.+.|+...+.|. ......+...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 87777776 3 355566666666655 3377788888887777653 3334445555543 457777888
Q ss_pred HHHHHHhCC
Q 004244 591 LLLKLFYDE 599 (766)
Q Consensus 591 l~~~~~~~~ 599 (766)
.|+...+.|
T Consensus 380 ~~~~A~~~g 388 (452)
T 3e4b_A 380 FSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHCC
Confidence 877777654
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=3.1e-13 Score=134.93 Aligned_cols=249 Identities=10% Similarity=0.012 Sum_probs=178.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 004244 466 SYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPD--EFTYTTLINA 543 (766)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~ 543 (766)
.+......+...|++++|+..+++..+.... +...+..+...+...|++++|+..++++.+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445566777888888888888888776432 445677777788888888888888888887431222 2347788888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhH
Q 004244 544 YCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNV 622 (766)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~ 622 (766)
+...|++++|.+.+++..+.. +.+...|..+...+...|++++|.+.+++.+.. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~----------- 149 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELG----------- 149 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHH-----------
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHH-----------
Confidence 888888888888888888752 445678888888888899999999999888774 343 33333322
Q ss_pred HHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCC---hHHHHHHHHHHHHcC-CCCC------HHH
Q 004244 623 AALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGN---VQKAYDLYKKMVRSG-FVPH------TVT 691 (766)
Q Consensus 623 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~ 691 (766)
..+...+++++|++.|+++.+. .| +...+..++.++...|+ +++|...++++++.. -.|+ ..+
T Consensus 150 ----~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (272)
T 3u4t_A 150 ----QAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEA 223 (272)
T ss_dssp ----HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 2444556999999999998874 34 57777888888888888 888999988887431 1233 156
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhc
Q 004244 692 IIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHK 736 (766)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 736 (766)
+..++..+...|++++|..+++++++.+ |.+...+..+......
T Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 224 NEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhhhhcc
Confidence 7778888899999999999999999988 5666666655554443
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=4.2e-12 Score=126.77 Aligned_cols=224 Identities=13% Similarity=-0.009 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004244 498 DTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCT----EGDIPQALRLHDEMIQKGFLPDVVTYS 573 (766)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~ 573 (766)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .|++++|.+.+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455555556666666666666666666522 34455556666666 666666666666666553 455555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhh----cCCHHHHHHHHHHH
Q 004244 574 VLINGLNK----QARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCM----KGLMNEADRVFELM 645 (766)
Q Consensus 574 ~li~~~~~----~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 645 (766)
.+...|.. .+++++|++.|++..+.+ +...+..+. ..|.. .|++++|++.|++.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg---------------~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLG---------------GIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH---------------HHHHHCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHH---------------HHHHcCCCcccCHHHHHHHHHHH
Confidence 56666666 666666666666665542 333444433 44555 66666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 004244 646 LQRNHMPNEAVYDIIIHGHSK----VGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHT----AGMNEELSQVIENILR 717 (766)
Q Consensus 646 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 717 (766)
.+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+...+.. .+++++|..+++++++
T Consensus 141 ~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 141 CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 6543 44455555555555 566666666666665442 23445555666666 6666666666666666
Q ss_pred cCCCChHHHHHHHHHHHhc----CCChhHHHHHHHHHHHCC
Q 004244 718 SCRLSDAELAKVLVEINHK----EGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 718 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 754 (766)
.++ ...+..++.+|.+ .|++++|.+.+++..+.|
T Consensus 215 ~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 215 LEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 542 4445556666665 666666666666655554
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.4e-13 Score=137.54 Aligned_cols=245 Identities=11% Similarity=-0.050 Sum_probs=150.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004244 476 RSQELDKAFDTKREMVEKGVL---PDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQ 552 (766)
Q Consensus 476 ~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 552 (766)
..|++++|+..++++.+.... .+..++..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 345666666666666654221 134556666666777777777777777766653 4456667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhc
Q 004244 553 ALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMK 632 (766)
Q Consensus 553 A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~ 632 (766)
|.+.++++++.. +.+...+..+...+...|++++|.+.++++... .|+.......+ ..+...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~---------------~~~~~~ 157 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWL---------------YLAEQK 157 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHH---------------HHHHHh
Confidence 777777776642 334566677777777777777777777777663 34433333333 333455
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHH
Q 004244 633 GLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-----TVTIIVLVKALHTAGMNEE 707 (766)
Q Consensus 633 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~ 707 (766)
|++++|...+++..... +++...+ .++..+...++.++|++.++++.+. .|+ ...+..++..+...|++++
T Consensus 158 ~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 158 LDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp HCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHH
Confidence 77777777776666532 2233333 3555666677777777777776532 221 3566677777778888888
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHH
Q 004244 708 LSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVL 747 (766)
Q Consensus 708 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 747 (766)
|...++++++.++ .+.. ....++...|++++|++.+
T Consensus 234 A~~~~~~al~~~p-~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 234 ATALFKLAVANNV-HNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCC-TTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhCCc-hhHH---HHHHHHHHHHHHHhhHHHH
Confidence 8888888877763 2222 2244566667777776654
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=1.9e-13 Score=131.17 Aligned_cols=198 Identities=15% Similarity=0.070 Sum_probs=143.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 497 PDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLI 576 (766)
Q Consensus 497 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li 576 (766)
++...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|+..+++.++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 355566677777777777777777777777664 5566677777777777788888888777777652 44566777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHH
Q 004244 577 NGLNKQ-----------ARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFEL 644 (766)
Q Consensus 577 ~~~~~~-----------g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (766)
..+... |++++|+..+++.++. .|+ ...+..+. ..+...|++++|+..|++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg---------------~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRG---------------LVYALLGERDKAEASLKQ 143 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH---------------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHH---------------HHHHHcCChHHHHHHHHH
Confidence 777777 9999999999999884 454 44444444 789999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 645 MLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENIL 716 (766)
Q Consensus 645 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (766)
+++.. .+...+..++.+|...|++++|+..++++++.. +.+...+..++..+...|++++|+..++++.
T Consensus 144 al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 144 ALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99876 688999999999999999999999999999653 3345788889999999999999999998765
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=8.2e-13 Score=131.82 Aligned_cols=236 Identities=11% Similarity=0.019 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 004244 500 ITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPD--VVTYSVLIN 577 (766)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~li~ 577 (766)
..+......+...|++++|+..++++.+.. +.+...+..+...|...|++++|++.+++..+..-.++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345567778999999999999999999875 44566888999999999999999999999998432222 345888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHH
Q 004244 578 GLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAV 656 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 656 (766)
.+...|++++|.+.+++.++.. +.+...+..+. ..|...|++++|+..++++.+. .| +...
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~---------------~~~~~~~~~~~A~~~~~~al~~--~~~~~~~ 144 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIG---------------SYFYNKGNFPLAIQYMEKQIRP--TTTDPKV 144 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH---------------HHHHHTTCHHHHHHHHGGGCCS--SCCCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHH---------------HHHHHccCHHHHHHHHHHHhhc--CCCcHHH
Confidence 9999999999999999998842 22344555555 8899999999999999999875 34 7788
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC---CCC----hHHH
Q 004244 657 YDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGM---NEELSQVIENILRSC---RLS----DAEL 726 (766)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~----~~~~ 726 (766)
|..++..+...+++++|++.++++++.. +.+...+..++..+...|+ .++|...++++++.. +.+ ...+
T Consensus 145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (272)
T 3u4t_A 145 FYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEA 223 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 8888834445569999999999999653 3335777888888888898 889999999998763 221 1367
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 727 AKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
|..++..|...|++++|.+.+++..+...
T Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 224 NEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 88899999999999999999999987653
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=1.3e-10 Score=129.11 Aligned_cols=445 Identities=9% Similarity=0.056 Sum_probs=286.4
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHH
Q 004244 270 IDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGN---LHQALVL 346 (766)
Q Consensus 270 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~ 346 (766)
..+....|++....+ +-|..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 334444555555544 347888888888888888888888888888875 33456677777777777888 8888888
Q ss_pred HHHHHHCC-CCCChHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHC-CC-CCC-HhHHHHHHHHHH---------
Q 004244 347 HAEMVRNG-LSPNVVTYTSLINSMCKSGNL--------NRAMEFFDQMHVR-EL-RPN-EKTYTTLINGFS--------- 405 (766)
Q Consensus 347 ~~~~~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~-~~-~~~-~~~~~~li~~~~--------- 405 (766)
|++.+... .+|++..|...+....+.++. +...++|+..... |. .++ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 88888753 137778888877766665543 3344667665543 54 443 456666665443
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 004244 406 QHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFD 485 (766)
Q Consensus 406 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 485 (766)
..++++.+..+|++++......-..+|......--..+. ..+..++.+ ...+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHH
Confidence 233466777788777753111112233222111111010 011111111 0112333444
Q ss_pred HHHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCC
Q 004244 486 TKREMVEK--GVL---------------P-----D---TITYSSLIHGLCEQR-------RITEACELFQEMLSRGMSPD 533 (766)
Q Consensus 486 ~~~~m~~~--~~~---------------p-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~ 533 (766)
.+.++... ++. | + ...|...+.---..+ ..+.+..+|++.+.. ++-.
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCC
Confidence 44332211 110 1 0 134555554322222 134456788888876 3557
Q ss_pred HHHHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCc
Q 004244 534 EFTYTTLINAYCTEGDIPQAL-RLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDE---------SVPS 603 (766)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~---------~~p~ 603 (766)
...|...+..+...|+.++|. +++++.+.. ++.+...|..++....+.|++++|.++|++++... ..|+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 788888888888899999997 999999875 56677778888888999999999999999988631 0131
Q ss_pred ------------HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CCh
Q 004244 604 ------------DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKV-GNV 670 (766)
Q Consensus 604 ------------~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 670 (766)
...|...+ ....+.|..+.|..+|.++.+.-.......|...+..-.+. ++.
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~---------------~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYM---------------NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---------------HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred chhhhhhhccchHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 11233333 66667899999999999998751111334444434333444 459
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHhcCCChhHHHHHHH
Q 004244 671 QKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRL--SDAELAKVLVEINHKEGNMDAVLNVLT 748 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 748 (766)
+.|.++|+..++. ++-+...|..++......|+.+.|..+|++++...++ .....|..+++.-.+.|+.+.+.++.+
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999875 3445567778888888999999999999999998743 346788888888899999999999999
Q ss_pred HHHHCCCC
Q 004244 749 EMAKDGLL 756 (766)
Q Consensus 749 ~m~~~~~~ 756 (766)
++.+.-..
T Consensus 566 R~~~~~P~ 573 (679)
T 4e6h_A 566 RFFEKFPE 573 (679)
T ss_dssp HHHHHSTT
T ss_pred HHHHhCCC
Confidence 99887654
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=8.5e-13 Score=137.29 Aligned_cols=248 Identities=10% Similarity=0.051 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 464 VVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRR-ITEACELFQEMLSRGMSPDEFTYTTLIN 542 (766)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 542 (766)
...|..+...+.+.|++++|+..+++++..... +...|..+...+...|+ +++|+..++++++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 345666677777778888888888887776543 66777778888888886 888888888888764 556777888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHHhHHHHhhhhchhhhhh
Q 004244 543 AYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVP-SDVIYNTLIENCTNIEFQN 621 (766)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~ 621 (766)
++...|++++|+..++++++.. +-+...|..+..++.+.|++++|+..++++++. .| +...|+.+.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg---------- 241 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRY---------- 241 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHH----------
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHH----------
Confidence 8888888888888888888752 456778888888888888888888888888874 33 344555555
Q ss_pred HHHHHhhhhh-cCCHHHH-----HHHHHHHHhCCCCC-CHHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCCHHHH
Q 004244 622 VAALLKGFCM-KGLMNEA-----DRVFELMLQRNHMP-NEAVYDIIIHGHSKVG--NVQKAYDLYKKMVRSGFVPHTVTI 692 (766)
Q Consensus 622 ~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~ 692 (766)
..+.. .|..++| +..++++++. .| +...|+.+..++.+.| ++++|++.+.++ + ..+.+...+
T Consensus 242 -----~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al 312 (382)
T 2h6f_A 242 -----FVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLI 312 (382)
T ss_dssp -----HHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHH
T ss_pred -----HHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHH
Confidence 55666 5554666 5788888874 45 6788888898898888 689999998887 2 223345777
Q ss_pred HHHHHHHHhcC--------C-hHHHHHHHHHH-HHcCCCChHHHHHHHHHHHhc
Q 004244 693 IVLVKALHTAG--------M-NEELSQVIENI-LRSCRLSDAELAKVLVEINHK 736 (766)
Q Consensus 693 ~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 736 (766)
..++..+.+.| + .++|+.+++++ .+.+ |.....|..++..+..
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 78888888764 2 58999999999 7777 5667778777766553
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=1.6e-12 Score=128.05 Aligned_cols=202 Identities=15% Similarity=0.043 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004244 499 TITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLING 578 (766)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 578 (766)
...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4566777777777788888888888777653 4456677777777777888888888887777652 3456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004244 579 LNKQARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVY 657 (766)
Q Consensus 579 ~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 657 (766)
+...|++++|.+.++++...+..|+ ...+..+. ..+...|++++|...++++.+.. +.+...+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la---------------~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 178 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG---------------LVSLQMKKPAQAKEYFEKSLRLN-RNQPSVA 178 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHhcC-cccHHHH
Confidence 7777777777777777766323343 23333333 66777777777777777777642 1256667
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 658 DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
..++..+...|++++|.+.++++.+.. +.+...+..++..+...|+.++|..+++++++..
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 777777777777777777777776432 2344566666777777777777777777777765
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=5.8e-13 Score=130.32 Aligned_cols=213 Identities=11% Similarity=0.052 Sum_probs=135.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 498 DTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLIN 577 (766)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 577 (766)
....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34455566666777777777777777776653 4456667777777777777777777777777652 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004244 578 GLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVY 657 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 657 (766)
.+...|++++|.+.++++.+.. +.+...+..+. ..+...|++++|...++++.+.. +.+...+
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a---------------~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 162 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLG---------------TVLVKLEQPKLALPYLQRAVELN-ENDTEAR 162 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHH---------------HHHHHTSCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH---------------HHHHHhccHHHHHHHHHHHHHhC-CccHHHH
Confidence 7777777888877777776642 22334444444 67778888888888888877642 2267777
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004244 658 DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLV 731 (766)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 731 (766)
..++..+.+.|++++|++.++++.+.. +.+..++..++..+...|+.++|...++++++.. |.+...+..+.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 234 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHH
Confidence 888888888888888888888887543 3345677788888888888888888888888877 44455554443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=3.5e-12 Score=125.61 Aligned_cols=200 Identities=11% Similarity=0.025 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhh
Q 004244 535 FTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENC 614 (766)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~ 614 (766)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la--- 112 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG--- 112 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH---
Confidence 344555555555566666666665555431 3344555555555555666666666665555431 11233333333
Q ss_pred chhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 004244 615 TNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTII 693 (766)
Q Consensus 615 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 693 (766)
..|...|++++|.+.++++.+.+..| +...+..++..+...|++++|++.++++++.. +.+...+.
T Consensus 113 ------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 179 (252)
T 2ho1_A 113 ------------GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVAL 179 (252)
T ss_dssp ------------HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred ------------HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHH
Confidence 45555566666666665555422223 34455555555555666666666665555432 22344555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
.++..+...|++++|..+++++++.. +.+...+..++..+...|++++|.+.++++.+.
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55555556666666666666655554 334445555555555566666666665555544
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=5.7e-13 Score=133.16 Aligned_cols=247 Identities=12% Similarity=-0.035 Sum_probs=158.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004244 441 TGGRVEDAVGVLHGMARKGLA---PDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITE 517 (766)
Q Consensus 441 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 517 (766)
..|++++|+..++.+.+.... .+..++..+...|...|++++|...|+++.+.... +..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 345666666666666654221 13455666667777777777777777777665432 56677777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004244 518 ACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFY 597 (766)
Q Consensus 518 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 597 (766)
|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+. .|+..........+...|++++|...+.+...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777777653 445667777777777788888888888777764 33333333344444566888888888877665
Q ss_pred CCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHhccCChHHHH
Q 004244 598 DESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHM--P-NEAVYDIIIHGHSKVGNVQKAY 674 (766)
Q Consensus 598 ~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~ 674 (766)
. .+++...+. +. ..+...++.++|...++++.+.... | +..+|..++..|.+.|++++|.
T Consensus 173 ~-~~~~~~~~~-~~---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 173 K-SDKEQWGWN-IV---------------EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp H-SCCCSTHHH-HH---------------HHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred c-CCcchHHHH-HH---------------HHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 4 222322222 33 5566777778888888877653211 1 1467788888888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004244 675 DLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVI 712 (766)
Q Consensus 675 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 712 (766)
+.++++++. .|+. +.....++...|++++|++.+
T Consensus 236 ~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 236 ALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 999988843 4543 222355667778888877765
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=7.1e-12 Score=120.73 Aligned_cols=204 Identities=11% Similarity=0.015 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 498 DTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLIN 577 (766)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 577 (766)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+. .+.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHH
Confidence 34556666666777777777777777766653 445666667777777777777777777777654 2345666777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004244 578 GLNKQ-ARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEA 655 (766)
Q Consensus 578 ~~~~~-g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 655 (766)
.+... |++++|.+.+++++..+..|+ ...+..+. ..+...|++++|+..++++.+.. +.+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 148 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG---------------ICSAKQGQFGLAEAYLKRSLAAQ-PQFPP 148 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHhC-CCCch
Confidence 77777 777777777777766322333 23333333 66777777777777777777642 12566
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 656 VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
.+..++..+.+.|++++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+..
T Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 7777777777888888888888777754211344556666666777778888877777777665
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=3.2e-12 Score=123.15 Aligned_cols=206 Identities=14% Similarity=0.022 Sum_probs=173.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 004244 531 SPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTL 610 (766)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l 610 (766)
+.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++.... +.+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKS-DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 344667888999999999999999999999976 35568899999999999999999999999998752 2344555555
Q ss_pred hhhhchhhhhhHHHHHhhhhhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 004244 611 IENCTNIEFQNVAALLKGFCMK-GLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH 688 (766)
Q Consensus 611 l~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 688 (766)
. ..+... |++++|...++++.+.+..| +...+..++.++...|++++|++.++++.+.. +.+
T Consensus 83 ~---------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 146 (225)
T 2vq2_A 83 G---------------WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQF 146 (225)
T ss_dssp H---------------HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred H---------------HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 5 788999 99999999999999833334 46788999999999999999999999998653 334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 689 TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 689 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
...+..++..+...|++++|..+++++++..+..+...+..++..+...|+.++|..+++.+.+..
T Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 678889999999999999999999999998742667778888899999999999999999987654
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=3.2e-10 Score=125.80 Aligned_cols=441 Identities=10% Similarity=0.025 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---hhhH
Q 004244 162 IDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGD---LEMG 238 (766)
Q Consensus 162 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A 238 (766)
..+-+..|+.....+ .-|...|..++..+.+.+. ++.+..+|+++... +|.+...|...+..-.+.|+ ++.+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~---~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQ---WKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 445555555554444 2466677777777766552 36777777777765 45666667777776667676 7777
Q ss_pred HHHHHHHHhCC-CCcCHHHHHHHHHHHHHcCCh----hH----HHHHHHHHhh-CCC-CCC-HHHHHHHHHHHH------
Q 004244 239 LRFFSEMEKNN-CLANVVTYNTLIDGYCKLGRI----DD----AFKLLRDMGL-KGI-EPN-LISYNVIINGLC------ 300 (766)
Q Consensus 239 ~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~----~~----A~~l~~~m~~-~g~-~p~-~~~~~~li~~~~------ 300 (766)
.++|++..... .+|++..|...+....+.++. ++ ..++|+.... .|. .++ ...|...+....
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 77777777653 136677777766665555543 22 3355555432 244 333 355665554432
Q ss_pred ---HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 004244 301 ---KEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNR 377 (766)
Q Consensus 301 ---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 377 (766)
..++++.+..+|++........-..+|......--..+. ..+..++.+ ...+++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~ 260 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHH
Confidence 223455666666666642111111222211111000010 011111111 0112333
Q ss_pred HHHHHHHHHHC--CC----C-----------C--C------HhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCC
Q 004244 378 AMEFFDQMHVR--EL----R-----------P--N------EKTYTTLINGFSQHG-------FLDEAYRLLNEMTKNGF 425 (766)
Q Consensus 378 A~~~~~~m~~~--~~----~-----------~--~------~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~ 425 (766)
|...+.++... ++ + | + ...|...+.---..+ ..+.+..+|++.... +
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~ 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence 44444433211 11 0 0 0 123444443322222 123345667776664 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---------C
Q 004244 426 MPSIVTYNALIKGHCTGGRVEDAV-GVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKG---------V 495 (766)
Q Consensus 426 ~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~ 495 (766)
+-+...|...+..+...|+.++|. .+|+..... ++.+...|-..+....+.|++++|.++|+++.... .
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 446667777777777778877885 888887764 34466667777777778888888888888776531 0
Q ss_pred CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHH
Q 004244 496 LP------------DTITYSSLIHGLCEQRRITEACELFQEMLSR-GMSPDEFTYTTLINAYCTE-GDIPQALRLHDEMI 561 (766)
Q Consensus 496 ~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 561 (766)
.| ....|...+....+.|..+.|..+|.++.+. + ......|...+..-.+. ++.+.|.++|+..+
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 12 1235666666666777788888888887765 2 22233333333322333 44788888888777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHH
Q 004244 562 QKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVP--SDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEAD 639 (766)
Q Consensus 562 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 639 (766)
+. ++.+...|...++.....|+.+.|..+|++.+.....+ ....|...+ ..-...|+.+.+.
T Consensus 498 k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~---------------~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 498 KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI---------------FFESKVGSLNSVR 561 (679)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH---------------HHHHHTCCSHHHH
T ss_pred HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HHHHHcCCHHHHH
Confidence 65 45566666677777777788888888888877642211 223444444 5556678888888
Q ss_pred HHHHHHHhC
Q 004244 640 RVFELMLQR 648 (766)
Q Consensus 640 ~~~~~~~~~ 648 (766)
++.+++.+.
T Consensus 562 ~v~~R~~~~ 570 (679)
T 4e6h_A 562 TLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887764
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=1.2e-12 Score=136.23 Aligned_cols=231 Identities=12% Similarity=0.088 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 499 TITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGD-IPQALRLHDEMIQKGFLPDVVTYSVLIN 577 (766)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~li~ 577 (766)
...|..+...+.+.|++++|+..++++++.. +-+...|..+...+...|+ +++|+..++++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567788888999999999999999999875 5678889999999999997 999999999999863 557889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-cHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHH
Q 004244 578 GLNKQARTMEAKKLLLKLFYDESVP-SDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEA 655 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 655 (766)
++...|++++|+..|++++.. .| +...|..+. .++...|++++|+..++++++. .| +..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg---------------~~~~~~g~~~eAl~~~~~al~l--~P~~~~ 235 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQ---------------WVIQEFKLWDNELQYVDQLLKE--DVRNNS 235 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHH---------------HHHHHHTCCTTHHHHHHHHHHH--CTTCHH
T ss_pred HHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHH---------------HHHHHcCChHHHHHHHHHHHHh--CCCCHH
Confidence 999999999999999999984 44 455566655 7888999999999999999985 35 789
Q ss_pred HHHHHHHHHhc-cCChHHH-----HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCChHHH
Q 004244 656 VYDIIIHGHSK-VGNVQKA-----YDLYKKMVRSGFVPH-TVTIIVLVKALHTAG--MNEELSQVIENILRSCRLSDAEL 726 (766)
Q Consensus 656 ~~~~l~~~~~~-~g~~~~A-----~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~ 726 (766)
.|+.++.++.+ .|..++| ++.++++++. .|+ ...|..+...+...| ++++|...++++ +.+ +.+..+
T Consensus 236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~a 311 (382)
T 2h6f_A 236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYL 311 (382)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHH
Confidence 99999999999 6666888 5889998864 454 478888888888888 689999999998 555 667888
Q ss_pred HHHHHHHHhcCC---------ChhHHHHHHHHH-HHCC
Q 004244 727 AKVLVEINHKEG---------NMDAVLNVLTEM-AKDG 754 (766)
Q Consensus 727 ~~~l~~~~~~~g---------~~~~A~~~~~~m-~~~~ 754 (766)
+..++++|.+.| ..++|.++++++ .+.+
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 899999999875 358999999998 5554
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=5.6e-13 Score=142.07 Aligned_cols=269 Identities=12% Similarity=0.035 Sum_probs=174.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 004244 469 TIISGFSRSQELDKAFDTKREMVEKGVLPDT----ITYSSLIHGLCEQRRITEACELFQEMLSR----GM-SPDEFTYTT 539 (766)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ 539 (766)
.+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...+++..+. +- +....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3344455555555555555555554222 22 24555555555666666666666555432 10 112345556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHh
Q 004244 540 LINAYCTEGDIPQALRLHDEMIQK----GF-LPDVVTYSVLINGLNKQAR-----------------TMEAKKLLLKLFY 597 (766)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~~~~ 597 (766)
+...|...|++++|...+++..+. +- +....++..+...+...|+ +++|.+.+++.+.
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666677777777766665532 10 1123456666777777777 7777777776643
Q ss_pred C----CCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhcc
Q 004244 598 D----ESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHM-PN----EAVYDIIIHGHSKV 667 (766)
Q Consensus 598 ~----~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~ 667 (766)
. +..+. ...+..+. ..|...|++++|+..+++..+.... ++ ..++..++..|...
T Consensus 212 ~~~~~~~~~~~~~~~~~la---------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLG---------------NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL 276 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHH---------------HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC
Confidence 2 11111 11223333 7899999999999999998752110 12 33788899999999
Q ss_pred CChHHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCChHHHHHHHHHHHhcC
Q 004244 668 GNVQKAYDLYKKMVRSG----FV-PHTVTIIVLVKALHTAGMNEELSQVIENILRSC-----RLSDAELAKVLVEINHKE 737 (766)
Q Consensus 668 g~~~~A~~~~~~m~~~~----~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 737 (766)
|++++|++.++++++.. .. ....++..++..+...|++++|..+++++++.. .......+..++.+|.+.
T Consensus 277 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999987421 11 113677789999999999999999999998762 122356788899999999
Q ss_pred CChhHHHHHHHHHHHC
Q 004244 738 GNMDAVLNVLTEMAKD 753 (766)
Q Consensus 738 g~~~~A~~~~~~m~~~ 753 (766)
|++++|.+.+++..+.
T Consensus 357 g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 357 GGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999999987654
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=1.3e-12 Score=127.90 Aligned_cols=204 Identities=16% Similarity=0.098 Sum_probs=158.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHh
Q 004244 532 PDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLI 611 (766)
Q Consensus 532 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll 611 (766)
.....|..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++++... +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34556778888899999999999999999986 35578899999999999999999999999998752 23445555555
Q ss_pred hhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHH
Q 004244 612 ENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVT 691 (766)
Q Consensus 612 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 691 (766)
..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|++.++++.+.. +.+...
T Consensus 99 ---------------~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 161 (243)
T 2q7f_A 99 ---------------NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEA 161 (243)
T ss_dssp ---------------HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ---------------HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHH
Confidence 78999999999999999999753 2378889999999999999999999999998653 345678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 692 IIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
+..++..+...|++++|...++++++.. +.+...+..++.++...|++++|.+.++++.+...
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 8899999999999999999999999987 56688899999999999999999999999887653
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=5.6e-13 Score=141.60 Aligned_cols=260 Identities=15% Similarity=0.071 Sum_probs=160.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHH
Q 004244 467 YSTIISGFSRSQELDKAFDTKREMVEK----GVLP-DTITYSSLIHGLCEQRRITEACELFQEMLSRGM-SPD----EFT 536 (766)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~ 536 (766)
+..+...|...|++++|...+++.... +..| ...++..+...+...|++++|...+++..+... .++ ..+
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 444444444444444444444443221 1011 123444555555566666666666555543200 011 235
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 004244 537 YTTLINAYCTEGD--------------------IPQALRLHDEMIQK----GFLP-DVVTYSVLINGLNKQARTMEAKKL 591 (766)
Q Consensus 537 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l 591 (766)
+..+...|...|+ +++|.+.+++..+. +..+ ...++..+...+...|++++|.+.
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5666666677777 77777777665432 1111 134667777778888888888888
Q ss_pred HHHHHhCC-CCCcH----HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 004244 592 LLKLFYDE-SVPSD----VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQR----NHMP-NEAVYDIII 661 (766)
Q Consensus 592 ~~~~~~~~-~~p~~----~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~ 661 (766)
+++.+... ..++. ..+..+. ..|...|++++|...+++..+. +..+ ...++..++
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la---------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLG---------------NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHH---------------HHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 88876431 01111 1233333 7788999999999999887742 1111 156788899
Q ss_pred HHHhccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCChHHHHHHHH
Q 004244 662 HGHSKVGNVQKAYDLYKKMVRS----GFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSC-----RLSDAELAKVLV 731 (766)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~ 731 (766)
..|...|++++|.+.++++.+. +..+. ..++..++..+...|++++|..+++++++.. .+....++..++
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 354 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLS 354 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 9999999999999999998742 11111 3567788999999999999999999988762 122356777888
Q ss_pred HHHhcCCChh
Q 004244 732 EINHKEGNMD 741 (766)
Q Consensus 732 ~~~~~~g~~~ 741 (766)
..+...|+..
T Consensus 355 ~~~~~~g~~~ 364 (406)
T 3sf4_A 355 DLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHhhHhH
Confidence 8888888663
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=1.8e-12 Score=133.55 Aligned_cols=268 Identities=15% Similarity=0.075 Sum_probs=170.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHH
Q 004244 471 ISGFSRSQELDKAFDTKREMVEKGVLPD----TITYSSLIHGLCEQRRITEACELFQEMLSR----GMS-PDEFTYTTLI 541 (766)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~l~ 541 (766)
...+...|++++|...++++.+.... + ...+..+...+...|++++|...+++..+. +.. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34455555555555555555544221 2 234445555555566666666655554432 101 1133455666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 004244 542 NAYCTEGDIPQALRLHDEMIQKGF-LPD----VVTYSVLINGLNKQAR--------------------TMEAKKLLLKLF 596 (766)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~~~ 596 (766)
..+...|++++|...+++..+..- .++ ..++..+...+...|+ +++|.+.+++.+
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 666667777777766666553200 111 2356666666777777 777777776654
Q ss_pred hC----CCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHhc
Q 004244 597 YD----ESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRN----HMP-NEAVYDIIIHGHSK 666 (766)
Q Consensus 597 ~~----~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~ 666 (766)
.. +..+. ...+..+. ..+...|++++|...+++..+.. ..+ ...++..++..+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLG---------------NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHH---------------HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH---------------HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 32 11111 11222222 78889999999999999887421 111 23478889999999
Q ss_pred cCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCChHHHHHHHHHHHhc
Q 004244 667 VGNVQKAYDLYKKMVRS----GFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSC-----RLSDAELAKVLVEINHK 736 (766)
Q Consensus 667 ~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 736 (766)
.|++++|.+.+++.++. +..+. ..++..++..+...|++++|..+++++++.. ......++..++.+|.+
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 315 (338)
T 3ro2_A 236 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 315 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999998742 11111 3567788999999999999999999998762 11225578889999999
Q ss_pred CCChhHHHHHHHHHHHCC
Q 004244 737 EGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 737 ~g~~~~A~~~~~~m~~~~ 754 (766)
.|++++|.+.+++..+..
T Consensus 316 ~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 316 LGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTCHHHHHHHHHHHHHC-
T ss_pred cCChHHHHHHHHHHHHHH
Confidence 999999999999987754
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=3.2e-12 Score=136.16 Aligned_cols=205 Identities=14% Similarity=0.044 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 004244 500 ITYSSLIHGLCEQRRITEACELFQEMLSR----G-MSPDEFTYTTLINAYCTEGD-----------------IPQALRLH 557 (766)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 557 (766)
.++..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 34445555555556666665555555432 1 01123355666666667777 77777766
Q ss_pred HHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcH----HhHHHHhhhhchhhhhhHHHHHh
Q 004244 558 DEMIQK----GF-LPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDES-VPSD----VIYNTLIENCTNIEFQNVAALLK 627 (766)
Q Consensus 558 ~~~~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~p~~----~~~~~ll~~~~~~~~~~~~~l~~ 627 (766)
++..+. +. .....++..+...+...|++++|.+.+++.+.... .++. ..+..+. .
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la---------------~ 271 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLG---------------N 271 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH---------------H
Confidence 665432 11 11234666777778888888888888888765310 0111 1223333 7
Q ss_pred hhhhcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 004244 628 GFCMKGLMNEADRVFELMLQRN----HMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS----GFVPH-TVTIIVLVK 697 (766)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~ 697 (766)
.|...|++++|...+++..+.. ..+ ...++..++..|...|++++|.+.++++++. +..+. ..++..++.
T Consensus 272 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 351 (411)
T 4a1s_A 272 SHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGN 351 (411)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 8889999999999998887521 111 2567888999999999999999999998742 11111 257778899
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 004244 698 ALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
.+...|++++|..+++++++..
T Consensus 352 ~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 352 AHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=3.4e-12 Score=135.56 Aligned_cols=276 Identities=14% Similarity=0.069 Sum_probs=208.3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-
Q 004244 462 PDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPD----TITYSSLIHGLCEQRRITEACELFQEMLSR----GMSP- 532 (766)
Q Consensus 462 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p- 532 (766)
.....+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++.... +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 45566677778888999999999999998886432 3 356888889999999999999999987653 2122
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHH
Q 004244 533 DEFTYTTLINAYCTEGDIPQALRLHDEMIQKGF-LPD----VVTYSVLINGLNKQAR--------------------TME 587 (766)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~ 587 (766)
...++..+...|...|++++|...+++..+..- .++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245778888999999999999999998875310 012 4478888888999999 999
Q ss_pred HHHHHHHHHhC----CCCCcH-HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCC-CCC----HHHH
Q 004244 588 AKKLLLKLFYD----ESVPSD-VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNH-MPN----EAVY 657 (766)
Q Consensus 588 A~~l~~~~~~~----~~~p~~-~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~ 657 (766)
|.+.+++.+.. +..|.. ..+..+. ..|...|++++|+..+++..+... .++ ..++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la---------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 230 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLG---------------NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 230 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHH---------------HHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 99999887642 111111 1223333 788999999999999998874210 112 3478
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CChHHHH
Q 004244 658 DIIIHGHSKVGNVQKAYDLYKKMVRS----GFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSCR-----LSDAELA 727 (766)
Q Consensus 658 ~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~ 727 (766)
..++..|...|++++|++.++++++. +..+. ..++..++..+...|++++|..+++++++... +....++
T Consensus 231 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 310 (406)
T 3sf4_A 231 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 88999999999999999999998742 11111 35777889999999999999999999987621 1125678
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 728 KVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 728 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
..++.+|...|++++|.+.+++..+.
T Consensus 311 ~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 311 WSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999886543
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=2.6e-12 Score=138.99 Aligned_cols=211 Identities=11% Similarity=-0.004 Sum_probs=177.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004244 514 RITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDI-PQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLL 592 (766)
Q Consensus 514 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 592 (766)
+++++...+++..... +.+...+..+...+...|++ ++|++.+++.++.. +.+...|..+...|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566777777766553 45777888888889999999 99999999988762 445788999999999999999999999
Q ss_pred HHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhc---------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 004244 593 LKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMK---------GLMNEADRVFELMLQRNHMP-NEAVYDIIIH 662 (766)
Q Consensus 593 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 662 (766)
++.++. .|+...+..+. ..+... |++++|+..++++.+. .| +...|..++.
T Consensus 161 ~~al~~--~p~~~~~~~lg---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 221 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLS---------------MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGN 221 (474)
T ss_dssp HHHHTT--CCCHHHHHHHH---------------HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhh--CCCHHHHHHHH---------------HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 999884 56655555555 777888 9999999999999985 35 7889999999
Q ss_pred HHhcc--------CChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHH
Q 004244 663 GHSKV--------GNVQKAYDLYKKMVRSGFVP----HTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVL 730 (766)
Q Consensus 663 ~~~~~--------g~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 730 (766)
+|... |++++|++.|+++++. .| +...|..++..+...|++++|...++++++.+ |.+...+..+
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l 298 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQRE 298 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 99998 9999999999999965 35 66889999999999999999999999999998 6678888999
Q ss_pred HHHHhcCCChhHHHHHHH
Q 004244 731 VEINHKEGNMDAVLNVLT 748 (766)
Q Consensus 731 ~~~~~~~g~~~~A~~~~~ 748 (766)
+.++...|++++|.+.+.
T Consensus 299 ~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999986543
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=1.9e-11 Score=128.81 Aligned_cols=232 Identities=11% Similarity=0.020 Sum_probs=170.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC----CCHHHHH
Q 004244 505 LIHGLCEQRRITEACELFQEMLSR----GMSP-DEFTYTTLINAYCTEGDIPQALRLHDEMIQK--GFL----PDVVTYS 573 (766)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~----p~~~~~~ 573 (766)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+. ... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677888999999998888764 1111 2356788888888999999999998887753 111 1235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcH----HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhC
Q 004244 574 VLINGLNKQARTMEAKKLLLKLFYDES-VPSD----VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQR 648 (766)
Q Consensus 574 ~li~~~~~~g~~~~A~~l~~~~~~~~~-~p~~----~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (766)
.+...|...|++++|.+.+++.+.... .++. .++..+. ..|...|++++|++.+++..+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg---------------~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIG---------------LCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHHHH
Confidence 888889999999999999988875310 1111 1333333 7899999999999999998861
Q ss_pred ----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHH
Q 004244 649 ----NHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGF---VPH-TVTIIVLVKALHTAGM---NEELSQVIENIL 716 (766)
Q Consensus 649 ----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 716 (766)
+..| ...++..++..|.+.|++++|.+.+++.++... .|. ...+..+...+...|+ .++|..++++.
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~- 332 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK- 332 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-
Confidence 2323 567789999999999999999999999874210 122 2335667788888898 78888888776
Q ss_pred HcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 717 RSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 717 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
...+.....+..++..|...|++++|.+.+++..+.
T Consensus 333 -~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 333 -MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 222344667889999999999999999999987654
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=8.9e-11 Score=119.35 Aligned_cols=238 Identities=11% Similarity=0.070 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHHcc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHH
Q 004244 463 DVVSYSTIISGFSRS----QEL----DKAFDTKREMVEKGVLPDTITYSSLIHGLCE-------QRRI-------TEACE 520 (766)
Q Consensus 463 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~-------~~A~~ 520 (766)
+...|...+..-.+. ++. ++|...|++.+.... -+...|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345666666654443 233 678888888887643 367778777777653 4775 88888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004244 521 LFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPD-VV-TYSVLINGLNKQARTMEAKKLLLKLFYD 598 (766)
Q Consensus 521 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~l~~~~~~~ 598 (766)
+|++.++.-.+.+...|..++..+.+.|++++|.++|+++++. .|+ .. .|..++..+.+.|++++|..+|++.++.
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887311445667888888888888999999999888874 343 33 7888888888888889998888888875
Q ss_pred CCCCcHHhHHHHhhhhchhhhhhHHHHHhh-hhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 004244 599 ESVPSDVIYNTLIENCTNIEFQNVAALLKG-FCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLY 677 (766)
Q Consensus 599 ~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 677 (766)
.. ++...|.... .. +...|+.++|..+|++.++.. +.+...|..++..+.+.|++++|+.+|
T Consensus 164 ~p-~~~~~~~~~a---------------~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~ 226 (308)
T 2ond_A 164 AR-TRHHVYVTAA---------------LMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp TT-CCTHHHHHHH---------------HHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CC-CCHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 22 2233332221 12 223688888888888888642 226778888888888888888888888
Q ss_pred HHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 004244 678 KKMVRSG-FVPH--TVTIIVLVKALHTAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 678 ~~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (766)
+++++.. +.|+ ...|..++..+...|+.++|..+++++++..|
T Consensus 227 ~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 227 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 8888752 3553 46777788888888888888888888888764
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=2.3e-12 Score=131.25 Aligned_cols=239 Identities=15% Similarity=0.077 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 004244 499 TITYSSLIHGLCEQRRITEACELFQEMLSR-------GMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK------GF 565 (766)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~ 565 (766)
..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++..+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345556666666666666666666666552 11223445666677777777777777777766643 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCcH-HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHH
Q 004244 566 -LPDVVTYSVLINGLNKQARTMEAKKLLLKLFYD------ESVPSD-VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNE 637 (766)
Q Consensus 566 -~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------~~~p~~-~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~ 637 (766)
+.....+..+...+...|++++|.+.+++++.. +..|+. ..+..+. ..+...|++++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la---------------~~~~~~~~~~~ 171 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA---------------LLCQNQGKYEE 171 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------------HHHHTTTCHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH---------------HHHHHcCCHHH
Confidence 223456777777888888888888888887653 122222 2233333 78999999999
Q ss_pred HHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc-------CCCCCH-------HHHHHHH
Q 004244 638 ADRVFELMLQR------NHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS-------GFVPHT-------VTIIVLV 696 (766)
Q Consensus 638 A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~-------~~~~~l~ 696 (766)
|++.++++.+. +..| ...++..++.+|...|++++|.+.++++++. ...+.. ..+....
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 99999998863 2233 4567889999999999999999999998853 111221 2222333
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 697 KALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
..+...+.+.+|...++++.... +....++..++.+|.+.|++++|.+++++..+.
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44445677777888888888765 567888999999999999999999999987754
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=2.1e-10 Score=116.50 Aligned_cols=216 Identities=8% Similarity=0.004 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCH-------HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 004244 446 EDAVGVLHGMARKGLAPDVVSYSTIISGFSR-------SQEL-------DKAFDTKREMVEK-GVLPDTITYSSLIHGLC 510 (766)
Q Consensus 446 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~ 510 (766)
++|..+|+++....+ .+...|..++..+.. .|++ ++|..+|++.++. .. -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 455566666655422 255555555555442 3553 5666666666552 21 14445666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 004244 511 EQRRITEACELFQEMLSRGMSPD-EF-TYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLN-KQARTME 587 (766)
Q Consensus 511 ~~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~-~~g~~~~ 587 (766)
..|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|++.++.. +++...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666653 222 22 55566666666666666666666666542 223333332222211 2466666
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHH
Q 004244 588 AKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRN-HMP--NEAVYDIIIHGH 664 (766)
Q Consensus 588 A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~ 664 (766)
|..+|++.++. .+.+...|..++ ..+.+.|++++|..+|+++.+.. ++| ....|..++..+
T Consensus 188 A~~~~~~al~~-~p~~~~~~~~~~---------------~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 188 AFKIFELGLKK-YGDIPEYVLAYI---------------DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHH---------------HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 66666666553 111233343333 55555666666666666666542 233 344555566666
Q ss_pred hccCChHHHHHHHHHHHH
Q 004244 665 SKVGNVQKAYDLYKKMVR 682 (766)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~ 682 (766)
.+.|+.++|..+++++.+
T Consensus 252 ~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666654
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=6.9e-12 Score=129.07 Aligned_cols=239 Identities=15% Similarity=0.076 Sum_probs=147.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 004244 466 SYSTIISGFSRSQELDKAFDTKREMVEK----GVL-PDTITYSSLIHGLCEQRRITEACELFQEMLSRGM-SPD----EF 535 (766)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~ 535 (766)
.+..+...|...|++++|.+.+++..+. +.. ....++..+...+...|++++|...+++..+... .++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444444444444444444444443321 101 1133455555566666666666666665543210 011 22
Q ss_pred HHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 004244 536 TYTTLINAYCTEGD--------------------IPQALRLHDEMIQK----GFL-PDVVTYSVLINGLNKQARTMEAKK 590 (766)
Q Consensus 536 ~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~ 590 (766)
++..+...+...|+ +++|.+.+++..+. +.. .....+..+...+...|++++|.+
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55566666667777 77777777665432 111 123466677777888888888888
Q ss_pred HHHHHHhCCC-CCc----HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHH
Q 004244 591 LLLKLFYDES-VPS----DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQR----NHMP-NEAVYDII 660 (766)
Q Consensus 591 l~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l 660 (766)
.+++...... .++ ...+..+. ..+...|++++|...+++..+. +..+ ...++..+
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~---------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 269 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLG---------------NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH---------------HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 8888764210 011 11222322 7888999999999999988742 1111 15677889
Q ss_pred HHHHhccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 661 IHGHSKVGNVQKAYDLYKKMVRS----GFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
+..+...|++++|.+.++++++. +..+. ..++..++..+...|++++|..+++++++..
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99999999999999999998742 11111 2567789999999999999999999999874
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=4.8e-11 Score=111.01 Aligned_cols=168 Identities=17% Similarity=0.108 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhh
Q 004244 533 DEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIE 612 (766)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~ 612 (766)
+...|..+...|.+.|++++|++.|++.++.. +-+...+..+...+.+.|++++|...+.+..... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~- 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG- 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH-
Confidence 45556666666666666666666666666542 3355566666666666666666666666665531 11222222222
Q ss_pred hhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHH
Q 004244 613 NCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTI 692 (766)
Q Consensus 613 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 692 (766)
..+...++++.|...+.+..+.. +.+...+..++.+|.+.|++++|++.|+++++.. +.+..+|
T Consensus 81 --------------~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~ 144 (184)
T 3vtx_A 81 --------------SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAY 144 (184)
T ss_dssp --------------HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred --------------HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHH
Confidence 45556666666666666665532 1145556666666666666666666666665432 2233555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 693 IVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
..++.++.+.|++++|+..++++++.+
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 566666666666666666666666654
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=6.6e-11 Score=124.60 Aligned_cols=163 Identities=10% Similarity=-0.022 Sum_probs=115.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 004244 435 LIKGHCTGGRVEDAVGVLHGMARK----GLAP-DVVSYSTIISGFSRSQELDKAFDTKREMVEKG--V----LPDTITYS 503 (766)
Q Consensus 435 ll~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~----~p~~~~~~ 503 (766)
....+...|++++|...++...+. +..+ ...++..+...|...|++++|...+++..+.- . .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556677777777777776653 1111 23566777777777888888877777766431 1 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 004244 504 SLIHGLCEQRRITEACELFQEMLSRGM-SPD----EFTYTTLINAYCTEGDIPQALRLHDEMIQK----GF-LPDVVTYS 573 (766)
Q Consensus 504 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~~~~~~ 573 (766)
.+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888889999999998888775310 111 246788889999999999999999988862 23 33456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 004244 574 VLINGLNKQARTMEAKKLLLKLFY 597 (766)
Q Consensus 574 ~li~~~~~~g~~~~A~~l~~~~~~ 597 (766)
.+...+.+.|++++|.+.+++.+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999999988765
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=2e-10 Score=106.70 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 428 SIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIH 507 (766)
Q Consensus 428 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 507 (766)
+..+|..+...|...|++++|+..|++..+..+. +..++..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 4556666677777777777777777776665433 5666777777777777777777777776665433 5556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004244 508 GLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTME 587 (766)
Q Consensus 508 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 587 (766)
.+...++++.|...+.+..... +.+...+..+...|.+.|++++|++.+++.++.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777776653 4456667777777777777777777777777652 4456677777777777788888
Q ss_pred HHHHHHHHHhCCCCCcHH
Q 004244 588 AKKLLLKLFYDESVPSDV 605 (766)
Q Consensus 588 A~~l~~~~~~~~~~p~~~ 605 (766)
|++.|++.++ ..|+..
T Consensus 160 A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHh--CCccCH
Confidence 8887777776 345543
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=5.5e-11 Score=128.54 Aligned_cols=214 Identities=10% Similarity=0.006 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004244 480 LDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRI-TEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHD 558 (766)
Q Consensus 480 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (766)
+++++..+++..... ..+...+..+...+...|++ ++|++.|++.++.. +.+...|..+...|.+.|++++|.+.++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666555432 23677777788888888888 88888888887764 4457788888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhh
Q 004244 559 EMIQKGFLPDVVTYSVLINGLNKQ---------ARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKG 628 (766)
Q Consensus 559 ~~~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~ 628 (766)
+.++. .|+...+..+...+... |++++|++.+++.++. .|+ ...|..+. ..
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg---------------~~ 222 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILG---------------NA 222 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH---------------HH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHH---------------HH
Confidence 88875 46778888888888888 9999999999998874 343 45555555 66
Q ss_pred hhhc--------CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004244 629 FCMK--------GLMNEADRVFELMLQRNHM--PNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKA 698 (766)
Q Consensus 629 ~~~~--------g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 698 (766)
|... |++++|+..|+++.+.... .+...|..++.+|...|++++|++.|+++++.. +.+...+..+...
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~ 301 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 7777 8899999999999985320 278899999999999999999999999998653 2344678889999
Q ss_pred HHhcCChHHHHHHHHHH
Q 004244 699 LHTAGMNEELSQVIENI 715 (766)
Q Consensus 699 ~~~~g~~~~A~~~~~~~ 715 (766)
+...|+.++|+..++++
T Consensus 302 ~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999998766544
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=1.7e-11 Score=124.65 Aligned_cols=239 Identities=14% Similarity=0.103 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 004244 464 VVSYSTIISGFSRSQELDKAFDTKREMVEK-------GVLPDTITYSSLIHGLCEQRRITEACELFQEMLSR------GM 530 (766)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~ 530 (766)
..++..+...|...|++++|...++++.+. .......++..+...+...|++++|...++++... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345555666666666666666666665542 12223445666666777777777777777766643 11
Q ss_pred -CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 004244 531 -SPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK------GF-LPDVVTYSVLINGLNKQARTMEAKKLLLKLFYD---- 598 (766)
Q Consensus 531 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---- 598 (766)
+....++..+...|...|++++|.+.++++.+. +. +.....+..+...+...|++++|.+.+++++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 223456777777888888888888888877753 11 223456777888888999999999999888763
Q ss_pred --CCCCcHH-hHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhC-------CCCCC-------HHHHHHHH
Q 004244 599 --ESVPSDV-IYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQR-------NHMPN-------EAVYDIII 661 (766)
Q Consensus 599 --~~~p~~~-~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~ 661 (766)
+..|... .+..+. ..|...|++++|.+.++++.+. ...+. ...+..+.
T Consensus 187 ~~~~~~~~~~~~~~la---------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLA---------------SCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp SCTTCHHHHHHHHHHH---------------HHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred hCCCCHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 1133322 233333 8899999999999999998852 11121 11223333
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 662 HGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
..+...+.+.+|...+++.... .|+ ..++..++..+...|++++|..+++++++..
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp ------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 4445566677777788777642 333 4778899999999999999999999998764
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=3.7e-10 Score=118.54 Aligned_cols=230 Identities=11% Similarity=-0.005 Sum_probs=151.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC---CC-CHHHHH
Q 004244 505 LIHGLCEQRRITEACELFQEMLSRGM-SPD----EFTYTTLINAYCTEGDIPQALRLHDEMIQK--GF---LP-DVVTYS 573 (766)
Q Consensus 505 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~---~p-~~~~~~ 573 (766)
....+...|++++|...+++..+... .++ ..++..+...|...|+++.|...+++..+. .. .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677888888888887765310 122 345677777788888888888888777642 11 11 234666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcH----HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh-
Q 004244 574 VLINGLNKQARTMEAKKLLLKLFYDES-VPSD----VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ- 647 (766)
Q Consensus 574 ~li~~~~~~g~~~~A~~l~~~~~~~~~-~p~~----~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 647 (766)
.+...+...|++++|.+.+++.+.... .++. .++..+. ..|...|++++|+..+++..+
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg---------------~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA---------------NSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHHHH
Confidence 777788888888888888887765210 0111 1222233 778888888888888888776
Q ss_pred ----CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC---CCCH-HHHHHHHHHHHhcCC---hHHHHHHHHHHH
Q 004244 648 ----RNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGF---VPHT-VTIIVLVKALHTAGM---NEELSQVIENIL 716 (766)
Q Consensus 648 ----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 716 (766)
.. +....++..++..+.+.|++++|.+.+++.++... .|.. ..+..+...+...|+ .++|+.++++.
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~- 329 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK- 329 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-
Confidence 32 22366778888888899999999999988875321 1222 344455555666777 77777777762
Q ss_pred HcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 717 RSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 717 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
...+.....+..++..|.+.|++++|.+.+++..+
T Consensus 330 -~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 330 -NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12233455677888899999999999888887654
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=1.2e-10 Score=131.05 Aligned_cols=162 Identities=15% Similarity=0.085 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh
Q 004244 569 VVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ 647 (766)
Q Consensus 569 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (766)
..+|+.+...+.+.|++++|++.|++.++. .|+ ...+..+. ..|.+.|++++|++.|+++++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg---------------~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLA---------------SVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHH
Confidence 345555566666666666666666665552 333 23333333 556666666666666666665
Q ss_pred CCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHH
Q 004244 648 RNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAE 725 (766)
Q Consensus 648 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 725 (766)
. .| +..+|..++.+|.+.|++++|++.|+++++. .|+ ...|..++.++...|++++|+..++++++.+ |.+..
T Consensus 72 l--~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~ 146 (723)
T 4gyw_A 72 I--SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPD 146 (723)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 3 24 4556666666666666666666666666643 233 3556666666666666666666666666665 45556
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 726 LAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
.+..++.+|...|++++|.+.++++.+
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666666666655443
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=4.7e-10 Score=103.98 Aligned_cols=166 Identities=15% Similarity=0.075 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCC
Q 004244 570 VTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRN 649 (766)
Q Consensus 570 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (766)
..+..+...+...|++++|.+.++++.... +.+...+..+. ..+...|++++|...++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~---------------~~~~~~~~~~~A~~~~~~~~~~~ 72 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLG---------------IAYVKTGAVDRGTELLERSLADA 72 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHhcC
Confidence 345555666667777777777777665531 22333444444 66677777777777777777642
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHH
Q 004244 650 HMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKV 729 (766)
Q Consensus 650 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 729 (766)
+.+...+..++..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|..+++++++.. +.+...+..
T Consensus 73 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 149 (186)
T 3as5_A 73 -PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRA 149 (186)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHH
Confidence 2256677777777777888888888887777542 3445667777777788888888888888887776 455677777
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 730 LVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 730 l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
++.++...|++++|.+.++++.+..
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8888888888888888887776654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=1.9e-09 Score=112.83 Aligned_cols=271 Identities=11% Similarity=0.033 Sum_probs=173.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 004244 438 GHCTGGRVEDAVGVLHGMARKGLAPDV----VSYSTIISGFSRSQELDKAFDTKREMVEKGV-LPD----TITYSSLIHG 508 (766)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~ 508 (766)
.+...|++++|...+++........+. .+++.+...+...|++++|...+++...... ..+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344556666666666655554322222 1344555566666777777766666554210 011 1234556667
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHH
Q 004244 509 LCEQRRITEACELFQEMLSR----GMS--P-DEFTYTTLINAYCTEGDIPQALRLHDEMIQKGF----LPDVVTYSVLIN 577 (766)
Q Consensus 509 ~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----~p~~~~~~~li~ 577 (766)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.....- .....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 77888888888888877652 211 2 234556677788888999999988888775311 112356777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC---C
Q 004244 578 GLNKQARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP---N 653 (766)
Q Consensus 578 ~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~ 653 (766)
.+...|++++|...+++.......++ ...+..... ...+..+...|++++|...+++.......+ .
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN----------KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH----------HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH----------HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 88899999999999988765311111 111211100 011144778999999999999987643221 1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 654 EAVYDIIIHGHSKVGNVQKAYDLYKKMVRS----GFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
...+..+...+...|++++|.+.++++.+. |..++. ..+..+..++...|+.++|...+++++..
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 335677888999999999999999988632 222233 36667788899999999999999998865
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=1.5e-09 Score=113.77 Aligned_cols=270 Identities=15% Similarity=0.045 Sum_probs=192.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHH
Q 004244 468 STIISGFSRSQELDKAFDTKREMVEKGVLPDTI----TYSSLIHGLCEQRRITEACELFQEMLSRGM-SPDE----FTYT 538 (766)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~~ 538 (766)
......+...|++++|...+++........+.. ++..+...+...|++++|...+++...... .++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344456778999999999999988764333332 456677788899999999999998875310 1122 2356
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--Cc--HHhH
Q 004244 539 TLINAYCTEGDIPQALRLHDEMIQK----GFL--P-DVVTYSVLINGLNKQARTMEAKKLLLKLFYDESV--PS--DVIY 607 (766)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--p~--~~~~ 607 (766)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.+..... +. ...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7788899999999999999988753 222 2 2345667888899999999999999998764221 11 1223
Q ss_pred HHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHH-----HHHHHHhccCChHHHHHHHHHHH
Q 004244 608 NTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYD-----IIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 608 ~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
..+. ..+...|++++|...+++.......+ ....+. ..+..+...|++++|...+++..
T Consensus 178 ~~la---------------~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 178 AMLI---------------QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp HHHH---------------HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHH---------------HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 3333 77889999999999999887531111 111221 23345779999999999999987
Q ss_pred HcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCh-HHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 682 RSGFVPH---TVTIIVLVKALHTAGMNEELSQVIENILRSCR----LSD-AELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 682 ~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
.....+. ...+..++..+...|++++|...+++++.... +.+ ...+..++.++...|+.++|...+++...
T Consensus 243 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4321111 23466788899999999999999999876521 112 34677888999999999999999988654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=1.2e-09 Score=114.50 Aligned_cols=90 Identities=8% Similarity=-0.045 Sum_probs=44.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC-CC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---C-CCHhHHHHHH
Q 004244 333 GYCKEGNLHQALVLHAEMVRNGL-SP----NVVTYTSLINSMCKSGNLNRAMEFFDQMHVRE--L---R-PNEKTYTTLI 401 (766)
Q Consensus 333 ~~~~~g~~~~A~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~---~-~~~~~~~~li 401 (766)
.+...|++++|...+++..+... .+ ...++..+...|...|++++|...+++..+.. . . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34456666666666666554210 01 13345555556666666666666555544320 0 0 0133444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004244 402 NGFSQHGFLDEAYRLLNEMTK 422 (766)
Q Consensus 402 ~~~~~~g~~~~A~~l~~~m~~ 422 (766)
..|...|++++|.+.+++..+
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~ 210 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALE 210 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 555555555555555555443
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=1.5e-09 Score=104.75 Aligned_cols=216 Identities=11% Similarity=0.017 Sum_probs=144.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 497 PDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLI 576 (766)
Q Consensus 497 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li 576 (766)
.|+..+......+...|++++|+..|++.++...+++...+..+..++...|++++|++.+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677777888888888888888888888876533677777778888888888888888888888752 33556777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCC---
Q 004244 577 NGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPN--- 653 (766)
Q Consensus 577 ~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--- 653 (766)
..+...|++++|.+.+++.++. .|+...+...+ ...+..+-..+...|++++|++.|+++++. .|+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 152 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLY-------AIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWK 152 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHH-------HHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCccc
Confidence 8888888888888888888773 44433222211 012234445667788888888888888774 354
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 004244 654 EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEI 733 (766)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 733 (766)
...|..++.+|...| ...++++...+ ..+...+... .....+.+++|+.+++++++.. |.+..+...+..+
T Consensus 153 ~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~i 223 (228)
T 4i17_A 153 TDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence 456667777775443 34445554332 2233333322 2334566799999999999987 4555555545443
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=7.2e-10 Score=107.02 Aligned_cols=195 Identities=14% Similarity=0.028 Sum_probs=142.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-HhHHHH
Q 004244 532 PDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSD-VIYNTL 610 (766)
Q Consensus 532 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~-~~~~~l 610 (766)
.|+..+......+...|++++|...|++.++..-+++...+..+..++...|++++|++.+++.++. .|+. ..+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 4567788888888999999999999999887643367777777888888999999999999998874 4543 344444
Q ss_pred hhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CH-------HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 004244 611 IENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NE-------AVYDIIIHGHSKVGNVQKAYDLYKKMVR 682 (766)
Q Consensus 611 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 682 (766)
. ..|...|++++|+..+++..+. .| +. ..|..++..+...|++++|++.++++++
T Consensus 83 ~---------------~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 83 S---------------AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp H---------------HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred H---------------HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 4 7888899999999999998874 34 45 4577888888889999999999999884
Q ss_pred cCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 683 SGFVPH---TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 683 ~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
..|+ ...+..++..+...| ...++++..... .+...+... .....|.+++|...+++..+...
T Consensus 146 --~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 146 --VTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred --cCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 3565 366667777775543 445566665542 223333222 23345668999999999887653
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=5e-10 Score=111.85 Aligned_cols=194 Identities=14% Similarity=0.133 Sum_probs=144.6
Q ss_pred HhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCc-HHhHHHH
Q 004244 545 CTEGDIPQALRLHDEMIQK-------GFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYD------ESVPS-DVIYNTL 610 (766)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------~~~p~-~~~~~~l 610 (766)
...|++++|+.++++.++. ..+....++..+...+...|++++|...+++++.. +..|. ...+..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666655542 11223567777888888888888888888887753 12222 2233333
Q ss_pred hhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 004244 611 IENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQR------NHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS 683 (766)
Q Consensus 611 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 683 (766)
. ..|...|++++|++.++++.+. ...| ...++..++..|...|++++|++.++++++.
T Consensus 92 ~---------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 92 A---------------VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp H---------------HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred H---------------HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 8899999999999999998863 1123 4677889999999999999999999998854
Q ss_pred ------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------------------------------------
Q 004244 684 ------GFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRS-------------------------------------- 718 (766)
Q Consensus 684 ------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------------------- 718 (766)
+..|+ ..++..++..+...|++++|..+++++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 11333 367888999999999999999999999875
Q ss_pred ----------CCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 719 ----------CRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 719 ----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
..+.....+..++.+|...|++++|.+++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22334667889999999999999999999988764
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=1.4e-09 Score=100.66 Aligned_cols=165 Identities=15% Similarity=0.006 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhc
Q 004244 536 TYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCT 615 (766)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~ 615 (766)
.+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.... +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a---- 83 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLG---- 83 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH----
Confidence 3444445555555555555555555433 12344555555555555666666666655555431 12233333333
Q ss_pred hhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004244 616 NIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVL 695 (766)
Q Consensus 616 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 695 (766)
..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..+
T Consensus 84 -----------~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 150 (186)
T 3as5_A 84 -----------LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAI 150 (186)
T ss_dssp -----------HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -----------HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHH
Confidence 55566666666666666666532 2255666666666777777777777777766542 2334566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC
Q 004244 696 VKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
+..+...|++++|..+++++++..
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 667777777777777777766654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=1.7e-09 Score=121.55 Aligned_cols=163 Identities=16% Similarity=0.138 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhh
Q 004244 534 EFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPS-DVIYNTLIE 612 (766)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~ 612 (766)
..+|+.|...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++.++. .|+ ...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg- 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG- 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH-
Confidence 3455556666666666666666666665541 233455566666666666666666666666552 333 33334333
Q ss_pred hhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HH
Q 004244 613 NCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TV 690 (766)
Q Consensus 613 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 690 (766)
..|...|++++|++.|++.++. .| +..+|+.++.+|.+.|++++|++.|+++++. .|+ ..
T Consensus 85 --------------~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~ 146 (723)
T 4gyw_A 85 --------------NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPD 146 (723)
T ss_dssp --------------HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHH
T ss_pred --------------HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 5566666666666666666653 34 4566666666666666677776666666643 343 35
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 691 TIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
.+..++..+...|++++|.+.++++++.
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 5666666666667766666666666554
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=1.8e-09 Score=107.83 Aligned_cols=170 Identities=18% Similarity=0.118 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC
Q 004244 534 EFTYTTLINAYCTEGDIPQALRLHDEMIQK------GF-LPDVVTYSVLINGLNKQARTMEAKKLLLKLFYD------ES 600 (766)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------~~ 600 (766)
..++..+...|...|++++|...++++.+. +. +....++..+...+...|++++|.+.+++.+.. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456667777777777887777777777643 11 223456777788888888888888888887653 11
Q ss_pred CCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCChHH
Q 004244 601 VPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQR------NHMP-NEAVYDIIIHGHSKVGNVQK 672 (766)
Q Consensus 601 ~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~ 672 (766)
.|+ ...+..+. ..|...|++++|...++++.+. +..| ...++..++.+|...|++++
T Consensus 123 ~~~~~~~~~~la---------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 123 HPDVAKQLNNLA---------------LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp CHHHHHHHHHHH---------------HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ChHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 222 22333333 7899999999999999998863 1133 45678899999999999999
Q ss_pred HHHHHHHHHHcC-----------------------------------------------CCCC-HHHHHHHHHHHHhcCC
Q 004244 673 AYDLYKKMVRSG-----------------------------------------------FVPH-TVTIIVLVKALHTAGM 704 (766)
Q Consensus 673 A~~~~~~m~~~~-----------------------------------------------~~p~-~~~~~~l~~~~~~~g~ 704 (766)
|++.++++++.. ..|+ ..++..++..+...|+
T Consensus 188 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 188 AETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 999999987530 1122 2567789999999999
Q ss_pred hHHHHHHHHHHHHc
Q 004244 705 NEELSQVIENILRS 718 (766)
Q Consensus 705 ~~~A~~~~~~~~~~ 718 (766)
+++|..+++++++.
T Consensus 268 ~~~A~~~~~~al~~ 281 (283)
T 3edt_B 268 LEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=2.5e-09 Score=107.50 Aligned_cols=195 Identities=10% Similarity=-0.010 Sum_probs=125.0
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCc--HHhHHHHhh
Q 004244 543 AYCTEGDIPQALRLHDEMIQK----GFLPD-VVTYSVLINGLNKQARTMEAKKLLLKLFYDES---VPS--DVIYNTLIE 612 (766)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~---~p~--~~~~~~ll~ 612 (766)
.|...|++++|...+.+..+. |.+++ ..+|..+...|.+.|++++|+..+++.+.... .+. ..++..+.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg- 124 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG- 124 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 344556666666655555432 21111 34556666666666666666666666554200 000 12233333
Q ss_pred hhchhhhhhHHHHHhhhhhc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 004244 613 NCTNIEFQNVAALLKGFCMK-GLMNEADRVFELMLQRNHM-PN----EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFV 686 (766)
Q Consensus 613 ~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 686 (766)
..|... |++++|+..|++.++.... .+ ..++..++..+.+.|++++|++.++++.+....
T Consensus 125 --------------~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 125 --------------EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp --------------HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred --------------HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 778886 9999999999998863110 01 456889999999999999999999999965322
Q ss_pred CCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHh--cCCChhHHHHHHHHHHH
Q 004244 687 PHT------VTIIVLVKALHTAGMNEELSQVIENILRSCRLSD----AELAKVLVEINH--KEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 687 p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 752 (766)
... ..+..++.++...|++++|+..++++++..+... ...+..++..+. ..+++++|++.++++..
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 211 1567788889999999999999999998763321 223445566664 56788999888876543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=4.2e-09 Score=105.87 Aligned_cols=194 Identities=12% Similarity=0.031 Sum_probs=125.0
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHH
Q 004244 509 LCEQRRITEACELFQEMLSR----GMSPD-EFTYTTLINAYCTEGDIPQALRLHDEMIQK----GFLP-DVVTYSVLING 578 (766)
Q Consensus 509 ~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~li~~ 578 (766)
|...|++++|...|++..+. |-+++ ..+|+.+...|.+.|++++|+..+++.++. |-.. ...++..+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556666666666555432 21111 345666666677777777777776666542 1100 13467778888
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCC-Cc----HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC
Q 004244 579 LNKQ-ARTMEAKKLLLKLFYDESV-PS----DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP 652 (766)
Q Consensus 579 ~~~~-g~~~~A~~l~~~~~~~~~~-p~----~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 652 (766)
|... |++++|++.|++.+..... .+ ..++..+. ..+...|++++|+..|+++.+.....
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg---------------~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA---------------DLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH---------------HHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 8886 9999999999988763110 01 12334444 88999999999999999999854322
Q ss_pred CH------HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 004244 653 NE------AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTV------TIIVLVKALH--TAGMNEELSQVIENILRS 718 (766)
Q Consensus 653 ~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 718 (766)
.. ..|..++.++...|++++|+..+++.++ +.|+.. .+..++..+. ..+++++|+..++++...
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 21 1577888899999999999999999873 345431 2344555554 457789999998888776
Q ss_pred C
Q 004244 719 C 719 (766)
Q Consensus 719 ~ 719 (766)
+
T Consensus 270 ~ 270 (292)
T 1qqe_A 270 D 270 (292)
T ss_dssp C
T ss_pred H
Confidence 5
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=6.1e-08 Score=95.35 Aligned_cols=245 Identities=9% Similarity=0.043 Sum_probs=151.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004244 437 KGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRIT 516 (766)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 516 (766)
+-..-.|++..++.-. .+...........-+.++|...|+++.. ....|....+..+... ...+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT---
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc---
Confidence 4444568888887733 2222222223333344667666665531 1223444344444433 3322
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 517 EACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGF-LPDVVTYSVLINGLNKQARTMEAKKLLLKL 595 (766)
Q Consensus 517 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 595 (766)
|+..+++..+.+ .++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677777777655 55566666777888888888888888888776542 135667777788888888888888888888
Q ss_pred HhCCCCCc-----HHhHHHHhhhhchhhhhhHHHHHhh--hhhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 004244 596 FYDESVPS-----DVIYNTLIENCTNIEFQNVAALLKG--FCMKG--LMNEADRVFELMLQRNHMPNEAVYDIIIHGHSK 666 (766)
Q Consensus 596 ~~~~~~p~-----~~~~~~ll~~~~~~~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 666 (766)
.+ ..|| ..+...+. .+ ....| +..+|..+|+++.+. .|+..+-..+..++.+
T Consensus 163 ~~--~~~d~~~~~d~~l~~La---------------ea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~ 223 (310)
T 3mv2_B 163 TN--AIEDTVSGDNEMILNLA---------------ESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQ 223 (310)
T ss_dssp HH--HSCHHHHHHHHHHHHHH---------------HHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHH
T ss_pred Hh--cCccccccchHHHHHHH---------------HHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHH
Confidence 76 4562 33333333 33 33334 888888888888764 2442333334447788
Q ss_pred cCChHHHHHHHHHHHHc-----CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 004244 667 VGNVQKAYDLYKKMVRS-----GF---VP-HTVTIIVLVKALHTAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 667 ~g~~~~A~~~~~~m~~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (766)
.|++++|.+.++.+.+. .. .| |..++..++......|+ +|.++++++.+..|
T Consensus 224 ~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 224 QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 88888888888876532 00 13 34566566666666676 78888888888873
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=7.6e-08 Score=94.67 Aligned_cols=251 Identities=11% Similarity=0.051 Sum_probs=161.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 004244 401 INGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQEL 480 (766)
Q Consensus 401 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 480 (766)
++-..-.|.+..++.- ..+...........-+.++|...|+.... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 3455668999988873 33322122233334455778888876642 12334544555444443 322
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004244 481 DKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGM-SPDEFTYTTLINAYCTEGDIPQALRLHDE 559 (766)
Q Consensus 481 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (766)
|+..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 788888887765 45666667888899999999999999999877653 24567788899999999999999999999
Q ss_pred HHHCCCCC-----CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhc
Q 004244 560 MIQKGFLP-----DVVTYSVLINGLNK--QARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMK 632 (766)
Q Consensus 560 ~~~~g~~p-----~~~~~~~li~~~~~--~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~ 632 (766)
|.+. .| +..+...++.++.. .|.- ........|.-+...+.. ......|+.++.+.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~-------------~~q~A~~~f~El~~~~p~--~~~~~lLln~~~~~ 224 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKE-------------TATSNFYYYEELSQTFPT--WKTQLGLLNLHLQQ 224 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCS-------------TTTHHHHHHHHHHTTSCS--HHHHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCc-------------cHHHHHHHHHHHHHhCCC--cccHHHHHHHHHHc
Confidence 9875 55 24555555555322 2220 122223344444432221 12233445688999
Q ss_pred CCHHHHHHHHHHHHhC-----CC---CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHH
Q 004244 633 GLMNEADRVFELMLQR-----NH---MP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTV 690 (766)
Q Consensus 633 g~~~~A~~~~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 690 (766)
|++++|.+.++.+.+. .. .| ++.++..++......|+ +|.++++++.+. .|+..
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 9999999999977642 11 24 66777556655666676 899999999864 56654
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=2.7e-09 Score=95.14 Aligned_cols=143 Identities=10% Similarity=0.009 Sum_probs=110.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH-hHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-
Q 004244 575 LINGLNKQARTMEAKKLLLKLFYDESVPSDV-IYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP- 652 (766)
Q Consensus 575 li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 652 (766)
|...+...|++++|+..+.+.... .|+.. .+..+. ..|...|++++|++.|++.++. .|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la---------------~~y~~~~~~~~A~~~~~~al~~--~p~ 63 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFA---------------KLYYEAKEYDLAKKYICTYINV--QER 63 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHH---------------HHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 344556678889999998888652 34332 223333 7889999999999999999984 45
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHH-HHHHHHHcCCCChHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQ-VIENILRSCRLSDAELAKVL 730 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l 730 (766)
+..+|..++.+|.+.|++++|+..|+++++. .|+ ...+..++..+.+.|+.++|.. +++++++.+ |.++.+|...
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~ 140 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLK 140 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 7889999999999999999999999999865 454 5788889999999999877665 569999988 6778888888
Q ss_pred HHHHhcCCC
Q 004244 731 VEINHKEGN 739 (766)
Q Consensus 731 ~~~~~~~g~ 739 (766)
...+...|+
T Consensus 141 ~~ll~~~G~ 149 (150)
T 4ga2_A 141 EQLLDCEGE 149 (150)
T ss_dssp HHHHHTCCC
T ss_pred HHHHHHhCc
Confidence 888888775
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.98 E-value=8.5e-07 Score=95.56 Aligned_cols=118 Identities=9% Similarity=0.069 Sum_probs=86.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVG-NVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
....+.+..+.|..+|+++ .. ...+...|...+..-...+ +.+.|..+|+..++.. +-++..|...++.....|+.
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH
Confidence 5555677899999999999 32 2234455543333333334 6999999999998652 22345566778888899999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 706 EELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
+.|..+++++. .....|...++.-...|+.+.+.++++++..
T Consensus 371 ~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999982 3577888888877888999999998888764
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=2.3e-08 Score=86.66 Aligned_cols=125 Identities=16% Similarity=0.138 Sum_probs=110.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 706 (766)
..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.+ +.+...+..++..+...|+++
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHH
Confidence 78889999999999999998753 2367888899999999999999999999998654 345678888999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 707 ELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 707 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
+|..+++++++.. +.+...+..++.++.+.|++++|.+.++++.+.+
T Consensus 87 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 87 EAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999987 5567788899999999999999999999988764
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=1.8e-08 Score=99.39 Aligned_cols=192 Identities=10% Similarity=0.058 Sum_probs=133.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCc-HHh
Q 004244 532 PDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPD---VVTYSVLINGLNKQARTMEAKKLLLKLFYDES-VPS-DVI 606 (766)
Q Consensus 532 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~p~-~~~ 606 (766)
.+...+..+...+.+.|++++|...|+++++.. +.+ ...+..+..++.+.|++++|+..|++.+.... .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345556666777777888888888888877652 223 56677777778888888888888888876421 112 122
Q ss_pred HHHHhhhhchhhhhhHHHHHhhhhh--------cCCHHHHHHHHHHHHhCCCCC-CHHHH-----------------HHH
Q 004244 607 YNTLIENCTNIEFQNVAALLKGFCM--------KGLMNEADRVFELMLQRNHMP-NEAVY-----------------DII 660 (766)
Q Consensus 607 ~~~ll~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p-~~~~~-----------------~~l 660 (766)
+..+. .++.. .|++++|+..|+++++.. | +.... ..+
T Consensus 92 ~~~lg---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~l 154 (261)
T 3qky_A 92 EYERA---------------MCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEA 154 (261)
T ss_dssp HHHHH---------------HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---------------HHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 56666 899999999999999743 4 33333 556
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCh--H
Q 004244 661 IHGHSKVGNVQKAYDLYKKMVRSGFVPH----TVTIIVLVKALHTA----------GMNEELSQVIENILRSCRLSD--A 724 (766)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--~ 724 (766)
+..|.+.|++++|+..|+++++.. |+ ...+..++.++... |++++|+..++++++..|... .
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 888999999999999999998652 33 35677788888866 888999999999999874432 3
Q ss_pred HHHHHHHHHHhcCCChhHH
Q 004244 725 ELAKVLVEINHKEGNMDAV 743 (766)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A 743 (766)
.....+..++.+.|+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 4455566666665555443
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.96 E-value=7.3e-07 Score=96.06 Aligned_cols=355 Identities=11% Similarity=0.015 Sum_probs=198.6
Q ss_pred CChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC-hhHHHHHHHHHhhC-CCCC-CHHHHHHHHHHHH----HcCCh
Q 004244 233 GDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGR-IDDAFKLLRDMGLK-GIEP-NLISYNVIINGLC----KEGRL 305 (766)
Q Consensus 233 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~~p-~~~~~~~li~~~~----~~g~~ 305 (766)
|+++.+..+|++.... .|++..|...+....+.++ .+....+|+..... |..| +...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7888888888888774 4688888888777776663 34556667665442 3322 5566766665543 24567
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004244 306 KETKGILNEISRKGLVPDEVTYNTLLNGYCK---EGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFF 382 (766)
Q Consensus 306 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 382 (766)
+.+.++|++....... +. ..+...|.. ......+..+..+. .+.+..|..++
T Consensus 106 ~~vR~iy~rAL~~P~~-~~---~~lw~~Y~~fE~~~~~~~~~~~~~~~---------------------~~~y~~ar~~y 160 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMG-SL---SELWKDFENFELELNKITGKKIVGDT---------------------LPIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHTSCCT-TH---HHHHHHHHHHHHHHCHHHHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhh-hH---HHHHHHHHHHHHHhccccHHHHHHHH---------------------hHHHHHHHHHH
Confidence 7788888888763211 11 122222211 11112222222111 11233334444
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 383 DQMHVRELRPNEKTYTTLINGFSQHG--F-----LDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGM 455 (766)
Q Consensus 383 ~~m~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 455 (766)
+++...-...+...|...++--...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++.
T Consensus 161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33332100012334444444322211 0 234566777777643 445666777777777778888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004244 456 ARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKG---------V---LPDTITYSSLIHGLCEQRRITEACELFQ 523 (766)
Q Consensus 456 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~---~p~~~~~~~li~~~~~~g~~~~A~~~~~ 523 (766)
... +.+...|.. |....+.++. ++.+.+.- . ......|...+....+.+..+.|..+|+
T Consensus 240 i~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~ 310 (493)
T 2uy1_A 240 IEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI 310 (493)
T ss_dssp HHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 776 223322222 1111111111 22221110 0 0112456666776767788999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004244 524 EMLSRGMSPDEFTYTTLINAYCT-EGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVP 602 (766)
Q Consensus 524 ~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p 602 (766)
+. ... ..+...|......-.. .++.+.|..+|+...+. ++.+...|...++...+.|+.+.|..+|+++. .
T Consensus 311 ~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k 382 (493)
T 2uy1_A 311 EL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----K 382 (493)
T ss_dssp HH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----C
T ss_pred Hh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----H
Confidence 99 322 2344444432222222 34699999999999875 33345667778888888999999999999973 2
Q ss_pred cHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh
Q 004244 603 SDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ 647 (766)
Q Consensus 603 ~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (766)
....|...+ +.-...|+.+.+.+++++..+
T Consensus 383 ~~~lw~~~~---------------~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 383 TSRMWDSMI---------------EYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp BHHHHHHHH---------------HHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HHHHHCCCHHHHHHHHHHHHH
Confidence 445566555 555667999999998887763
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=4.9e-08 Score=93.80 Aligned_cols=190 Identities=12% Similarity=0.000 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH----hH
Q 004244 534 EFTYTTLINAYCTEGDIPQALRLHDEMIQKGF-LP-DVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDV----IY 607 (766)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~----~~ 607 (766)
...+..+...+.+.|++++|+..|+++++... .| ....+..+..++.+.|++++|+..|+++++. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455666778888888888888888886421 11 1356777788888888888888888888764 33321 12
Q ss_pred HHHhhhhchhhhhhHHHHHhhhhh------------------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccC
Q 004244 608 NTLIENCTNIEFQNVAALLKGFCM------------------KGLMNEADRVFELMLQRNHMPN-EAVYDIIIHGHSKVG 668 (766)
Q Consensus 608 ~~ll~~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 668 (766)
..+. .++.. .|++++|+..|+++++.. |+ ...+......
T Consensus 82 ~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----- 139 (225)
T 2yhc_A 82 YMRG---------------LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----- 139 (225)
T ss_dssp HHHH---------------HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH-----
T ss_pred HHHH---------------HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH-----
Confidence 1111 33332 344555555555555421 21 1111111000
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCh--HHHHHHHHHHHhcCCChhHHHHH
Q 004244 669 NVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSD--AELAKVLVEINHKEGNMDAVLNV 746 (766)
Q Consensus 669 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 746 (766)
..+...+ ......++..+.+.|++++|+..++++++..|... ...+..++.+|.+.|++++|.+.
T Consensus 140 -----~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 140 -----VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0000000 01113567788899999999999999999874433 36788999999999999999999
Q ss_pred HHHHHHCCCCCCCC
Q 004244 747 LTEMAKDGLLPNSG 760 (766)
Q Consensus 747 ~~~m~~~~~~~~~~ 760 (766)
++++...+..-...
T Consensus 207 ~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 207 AKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHCCSCCCCC
T ss_pred HHHHHhhCCCchhh
Confidence 99999887655443
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.2e-07 Score=89.96 Aligned_cols=176 Identities=11% Similarity=-0.001 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 004244 517 EACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQA----RTMEAKKLL 592 (766)
Q Consensus 517 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~l~ 592 (766)
+|.+.|++..+.| +...+..|...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 44455555555555666666666666655543 44444445555544 4 555555555
Q ss_pred HHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhc-
Q 004244 593 LKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCM----KGLMNEADRVFELMLQRNHM-PNEAVYDIIIHGHSK- 666 (766)
Q Consensus 593 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~- 666 (766)
++..+.| +...+..+. ..|.. .+++++|++.|++..+.|.. .++..+..|...|..
T Consensus 77 ~~A~~~g---~~~a~~~Lg---------------~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLA---------------RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHHHTT---CHHHHHHHH---------------HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCC---CHHHHHHHH---------------HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 5554432 222222222 23333 45555555555555554311 014444555555554
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcC
Q 004244 667 ---VGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTA-G-----MNEELSQVIENILRSC 719 (766)
Q Consensus 667 ---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 719 (766)
.+++++|+++|++..+. ..+...+..|...|... | +.++|..+++++.+.+
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44555555555555543 12223344444444332 2 4555555555555544
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=4e-08 Score=96.90 Aligned_cols=171 Identities=8% Similarity=-0.027 Sum_probs=136.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHH
Q 004244 566 LPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPS----DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRV 641 (766)
Q Consensus 566 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 641 (766)
+.+...+..+...+.+.|++++|+..|++++.. .|+ ...+..+. .+|...|++++|+..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg---------------~~~~~~~~~~~A~~~ 74 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLA---------------RAYYQNKEYLLAASE 74 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHH---------------HHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHH---------------HHHHHhCcHHHHHHH
Confidence 345677777888899999999999999999885 343 33344444 789999999999999
Q ss_pred HHHHHhCCC-CC-CHHHHHHHHHHHhc--------cCChHHHHHHHHHHHHcCCCCCH-HHH-----------------H
Q 004244 642 FELMLQRNH-MP-NEAVYDIIIHGHSK--------VGNVQKAYDLYKKMVRSGFVPHT-VTI-----------------I 693 (766)
Q Consensus 642 ~~~~~~~~~-~p-~~~~~~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~~~-----------------~ 693 (766)
|+++++... .| ....+..++.++.. .|++++|++.|+++++. .|+. ... .
T Consensus 75 ~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~ 152 (261)
T 3qky_A 75 YERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQY 152 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999997532 12 25567788888988 99999999999999865 3432 223 5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHhcC----------CChhHHHHHHHHHHHCCC
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSCRLS--DAELAKVLVEINHKE----------GNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~ 755 (766)
.++..+...|++++|+..++++++..+.. ....+..++.+|... |++++|...++++.+...
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 66888999999999999999999987433 467888899999876 899999999999887653
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=8.4e-09 Score=116.64 Aligned_cols=171 Identities=11% Similarity=-0.037 Sum_probs=92.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 510 CEQRRITEACELFQEML--------SRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNK 581 (766)
Q Consensus 510 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~ 581 (766)
...|++++|++.+++.. +.. +.+...+..+...+.+.|++++|++.++++++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666666666666665 322 3344555566666666666666666666666541 3345556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 004244 582 QARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDI 659 (766)
Q Consensus 582 ~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 659 (766)
.|++++|.+.|++.++. .|+ ...+..+. ..+.+.|++++ ++.|+++++. .| +...|..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg---------------~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~ 539 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALA---------------ATAELAGNTDE-HKFYQTVWST--NDGVISAAFG 539 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHH---------------HHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHH---------------HHHHHcCChHH-HHHHHHHHHh--CCchHHHHHH
Confidence 66666666666666552 232 22333333 45555666666 6666666553 23 4555566
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCC
Q 004244 660 IIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGM 704 (766)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~ 704 (766)
++.++.+.|++++|++.|+++++ ..|+. ..+..++.++...|+
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 66666666666666666666552 23443 444445555444444
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=2.2e-07 Score=88.14 Aligned_cols=177 Identities=10% Similarity=-0.014 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhh
Q 004244 552 QALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCM 631 (766)
Q Consensus 552 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~ 631 (766)
+|.+.|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..+. ..|..
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg---------------~~y~~ 62 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLA---------------QLKIR 62 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHH---------------HHTTS
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHH---------------HHHHc
Confidence 3555666666553 55666666666666777777777777766643 233333333 34444
Q ss_pred cC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh-
Q 004244 632 KG----LMNEADRVFELMLQRNHMPNEAVYDIIIHGHSK----VGNVQKAYDLYKKMVRSGFV-PHTVTIIVLVKALHT- 701 (766)
Q Consensus 632 ~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~- 701 (766)
+ ++++|++.|++..+.| ++..+..|...|.. .+++++|+++|++..+.|.. .+...+..|...+..
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 4 6777777777776643 55666666666665 66777777777776644311 014556666666666
Q ss_pred ---cCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcC-C-----ChhHHHHHHHHHHHCCC
Q 004244 702 ---AGMNEELSQVIENILRSCRLSDAELAKVLVEINHKE-G-----NMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 702 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 755 (766)
.++.++|..+++++.+.+ .+...+..|+.+|... | +.++|.+++++..+.|.
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 666777777777776651 2233455566666532 2 67777777777666653
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=1.1e-07 Score=82.41 Aligned_cols=128 Identities=19% Similarity=0.216 Sum_probs=76.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 467 YSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCT 546 (766)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 546 (766)
+..+...+...|++++|...++++.+.+. .+...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 44455555566666666666666555432 245555556666666666666666666665543 3345556666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004244 547 EGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFY 597 (766)
Q Consensus 547 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 597 (766)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666542 33455666666666666777777666666654
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=5.9e-08 Score=91.87 Aligned_cols=124 Identities=11% Similarity=0.032 Sum_probs=97.6
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGM- 704 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~- 704 (766)
..|...|++++|+..|++.++. .| +...|..++.++...|++++|++.|+++++.. +.+...+..++..+...|+
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 7889999999999999999985 35 78899999999999999999999999999653 3345788888888876654
Q ss_pred -hHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 705 -NEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 705 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
.+.+...++++.. +++....+..++.++...|++++|...+++..+...
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4556666666653 233344566678888889999999999999987654
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=6.6e-08 Score=96.71 Aligned_cols=164 Identities=15% Similarity=0.065 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHH
Q 004244 568 DVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSD-VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELML 646 (766)
Q Consensus 568 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (766)
+...+..+...+...|++++|...|++.+.. .|+. ..+..+. ..+...|++++|...++++.
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la---------------~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLA---------------ETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHH---------------HHHHHTTCHHHHHHHHTTSC
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHH---------------HHHHHCCCHHHHHHHHHhCc
Confidence 3445555556666666666666666666653 3332 2233333 56666666666666666665
Q ss_pred hCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-hH
Q 004244 647 QRNHMPNEAVY-DIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLS-DA 724 (766)
Q Consensus 647 ~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 724 (766)
.. .|+.... ......+.+.++.++|++.++++++.. +.+...+..++..+...|++++|...++++++.++.. +.
T Consensus 179 ~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 179 LQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp GG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred hh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 53 2433322 222223455666666777776666442 2334566666777777777777777777777765322 25
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 725 ELAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 725 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
..+..++..+...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 566667777777777777776666543
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=1.2e-06 Score=87.11 Aligned_cols=232 Identities=8% Similarity=0.012 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CC
Q 004244 479 ELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQR--RITEACELFQEMLSRGMSPDEFTYTTLINAY----CTE---GD 549 (766)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~---g~ 549 (766)
..++|++.++.++..++. +...|+.-...+...| +++++++.++.++... +-+..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 335777777777776543 5566777777777777 8888888888887764 44555555544444 444 67
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHh
Q 004244 550 IPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTM--EAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLK 627 (766)
Q Consensus 550 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~ 627 (766)
+++++++++.+.+. .+-+..+|+--...+.+.|.++ ++++.++++++.. .-|...|+-.. .
T Consensus 126 ~~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~---------------~ 188 (306)
T 3dra_A 126 PYREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRF---------------F 188 (306)
T ss_dssp THHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHH---------------H
Confidence 88888888888875 3557777777666777778777 8888888888752 23444554433 3
Q ss_pred hhhhcCC------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHH-HHHHHHHHHHcC--CCCCHHHHHHHHH
Q 004244 628 GFCMKGL------MNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQK-AYDLYKKMVRSG--FVPHTVTIIVLVK 697 (766)
Q Consensus 628 ~~~~~g~------~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~l~~ 697 (766)
.....|+ ++++++.+++++.. .| |...|+.+...+.+.|+..+ +.++.+++.+.+ -..+...+..++.
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 3334444 88999999999875 35 88899999888888888544 556777665322 1335577888899
Q ss_pred HHHhcCChHHHHHHHHHHHH-cCCCChHHHHHHHHH
Q 004244 698 ALHTAGMNEELSQVIENILR-SCRLSDAELAKVLVE 732 (766)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~ 732 (766)
.+.+.|+.++|+++++++.+ .+ |.....|...+.
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~~~D-pir~~yW~~~~~ 301 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKSKYN-PIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHhccC-hHHHHHHHHHHh
Confidence 99999999999999999987 46 566777765444
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.82 E-value=9.6e-07 Score=87.85 Aligned_cols=223 Identities=7% Similarity=-0.003 Sum_probs=171.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc--
Q 004244 511 EQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEG--DIPQALRLHDEMIQKGFLPDVVTYSVLINGL----NKQ-- 582 (766)
Q Consensus 511 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~----~~~-- 582 (766)
+....++|+++++.++..+ +-+...|+.-...+...| ++++++++++.++... +-+..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 3345579999999999875 556677888888888888 9999999999999863 44555665544444 444
Q ss_pred -CCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHH--HHHHHHHHHHhCCCCCCHHHHHH
Q 004244 583 -ARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMN--EADRVFELMLQRNHMPNEAVYDI 659 (766)
Q Consensus 583 -g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~ 659 (766)
+++++++++++++++. .+.+...|+-.. ..+.+.|+++ ++++.++++++... -|...|+.
T Consensus 123 ~~~~~~EL~~~~~~l~~-~pkny~aW~~R~---------------~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~ 185 (306)
T 3dra_A 123 DFDPYREFDILEAMLSS-DPKNHHVWSYRK---------------WLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSH 185 (306)
T ss_dssp CCCTHHHHHHHHHHHHH-CTTCHHHHHHHH---------------HHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHH---------------HHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 7899999999999985 234555665555 5566677877 99999999998542 28888888
Q ss_pred HHHHHhccCC------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcC--CCChHHHHHHH
Q 004244 660 IIHGHSKVGN------VQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEE-LSQVIENILRSC--RLSDAELAKVL 730 (766)
Q Consensus 660 l~~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l 730 (766)
-...+...|. ++++++.+++++... +-|...|+.+...+.+.|+..+ +..+.+++.+.+ .+.....+..+
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 8888887777 899999999999653 4455888888888888888544 556777776543 24456778889
Q ss_pred HHHHhcCCChhHHHHHHHHHHHC
Q 004244 731 VEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 731 ~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
+++|.+.|+.++|.++++++.++
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHccCCHHHHHHHHHHHHhc
Confidence 99999999999999999998863
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=9.6e-08 Score=95.52 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 004244 531 SPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTL 610 (766)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l 610 (766)
+.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...++++... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL-SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 344556677778888899999999999988876 2456778888888999999999999999888763 4554433333
Q ss_pred hhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CCH
Q 004244 611 IENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFV-PHT 689 (766)
Q Consensus 611 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~ 689 (766)
.. ..+...++.++|+..+++..+.. +.+...+..++..+...|++++|++.++++++.... .+.
T Consensus 191 ~~--------------~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 191 AQ--------------IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp HH--------------HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred HH--------------HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 21 34667778888999999988753 227888999999999999999999999999865311 125
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 690 VTIIVLVKALHTAGMNEELSQVIENILR 717 (766)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (766)
..+..++..+...|+.++|...+++.+.
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 6788899999999999999999988775
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=1.4e-08 Score=90.44 Aligned_cols=124 Identities=7% Similarity=-0.133 Sum_probs=105.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
..+...|++++|+..++..... .| +...+..++..|.+.|++++|++.|+++++.. +-+..+|..++.++...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 5677889999999999998763 34 56677889999999999999999999999653 33458899999999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHH-HHHHHHCC
Q 004244 706 EELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNV-LTEMAKDG 754 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~ 754 (766)
++|+..++++++.+ |.+..++..++.+|.+.|++++|.+. +++..+..
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999998 67788999999999999999887765 57777654
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=7.8e-08 Score=106.77 Aligned_cols=154 Identities=13% Similarity=0.040 Sum_probs=112.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 004244 582 QARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDI 659 (766)
Q Consensus 582 ~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 659 (766)
.|++++|.+.+++.++. .|+ ...+..+. ..+...|++++|++.+++..+. .| +...|..
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg---------------~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 62 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLA---------------DAELGMGDTTAGEMAVQRGLAL--HPGHPEAVAR 62 (568)
T ss_dssp ---------------------CCHHHHHHHH---------------HHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 46788888888888764 343 44455554 7888899999999999999885 34 6888899
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcC--
Q 004244 660 IIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKE-- 737 (766)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 737 (766)
++.+|...|++++|++.++++++.. +.+...+..++..+...|++++|...++++++.+ +.+...+..++.++...
T Consensus 63 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 63 LGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998653 3345788889999999999999999999999987 56677888899999999
Q ss_pred -CChhHHHHHHHHHHHCCCC
Q 004244 738 -GNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 738 -g~~~~A~~~~~~m~~~~~~ 756 (766)
|+.++|.+.+++..+.+..
T Consensus 141 ~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCC
T ss_pred cccHHHHHHHHHHHHhcCCc
Confidence 9999999999998876643
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=4.9e-08 Score=89.64 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 004244 673 AYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSCRLS-DAELAKVLVEINHKEGNMDAVLNVLTEM 750 (766)
Q Consensus 673 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 750 (766)
|++.++++++. .|+ ...+..++..+...|++++|+..++++++.+|.+ +...+..++.++...|+.++|...+++.
T Consensus 93 a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 44445544432 222 3444445555555555555555555555554322 2334445555555555555555555443
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=1.7e-07 Score=88.61 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=93.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004244 468 STIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTE 547 (766)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 547 (766)
..+...|.+.|++++|+..|++..+..+. +...+..+...+...|++++|+..|++.++.. +.+..++..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34777888888888888888888877543 67788888888888899999999888888864 55677788888777655
Q ss_pred CC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 004244 548 GD--IPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNT 609 (766)
Q Consensus 548 g~--~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ 609 (766)
|+ .+.+...++.... ..|....+.....++...|++++|+..|++.++ ..|+......
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 53 3444555554432 122223344445556678889999999998887 4666544433
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=7.4e-08 Score=97.50 Aligned_cols=91 Identities=9% Similarity=-0.053 Sum_probs=51.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCCH-HHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQR----NHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS----GFVPHT-VTIIVLV 696 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~ 696 (766)
..|.. |++++|+..|++.++. +..+ ...++..++..|.+.|++++|++.++++++. +..+.. ..+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 45555 6666666666665531 1000 1345666667777777777777777776532 111111 2444555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 004244 697 KALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
..+...|++++|...+++++ ..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TS
T ss_pred HHHHHcCCHHHHHHHHHHHh-CC
Confidence 55666677777777777776 54
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=1.7e-06 Score=86.72 Aligned_cols=163 Identities=13% Similarity=-0.012 Sum_probs=123.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHH----hHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCC
Q 004244 575 LINGLNKQARTMEAKKLLLKLFYDES-VPSDV----IYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRN 649 (766)
Q Consensus 575 li~~~~~~g~~~~A~~l~~~~~~~~~-~p~~~----~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (766)
.+..+...|++++|.+++++...... .|+.. .+..+. ..+...|++++|+..++++.+..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVA---------------AYVLKKVDYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH---------------HHHTTSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHH---------------HHHHcccCHHHHHHHHHHHHHHh
Confidence 35667889999999999999887422 22221 111222 66778889999999999998742
Q ss_pred CC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHHH----c-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 650 HM-PN----EAVYDIIIHGHSKVGNVQKAYDLYKKMVR----S-GFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 650 ~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
.. ++ ..+|+.++..|...|++++|++.++++++ . +..+.. .++..++..+...|++++|+.+++++++.
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22 23 34689999999999999999999999883 1 222222 47788999999999999999999999875
Q ss_pred C-----CCChHHHHHHHHHHHhcCCC-hhHHHHHHHHHHH
Q 004244 719 C-----RLSDAELAKVLVEINHKEGN-MDAVLNVLTEMAK 752 (766)
Q Consensus 719 ~-----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 752 (766)
. ...-..+|..++.+|.+.|+ +++|.+.+++...
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2 12237789999999999995 6999999887653
No 113
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.75 E-value=5.8e-08 Score=109.76 Aligned_cols=184 Identities=10% Similarity=-0.057 Sum_probs=145.8
Q ss_pred HccCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 475 SRSQELDKAFDTKREMV--------EKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCT 546 (766)
Q Consensus 475 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 546 (766)
...|++++|++.+++.. +.. ..+...+..+...+...|++++|+..++++.+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78999999999999998 433 2366788889999999999999999999999875 5678899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHH
Q 004244 547 EGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAAL 625 (766)
Q Consensus 547 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l 625 (766)
.|++++|.+.|++.++.. +.+...|..+..++.+.|++++ ++.|++.++. .|+ ...|..+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg-------------- 541 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLA-------------- 541 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHH--------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHH--------------
Confidence 999999999999999862 4467888899999999999999 9999999874 443 44555555
Q ss_pred HhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHH-HHHHHHHH
Q 004244 626 LKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKA-YDLYKKMV 681 (766)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 681 (766)
..+.+.|++++|++.|+++.+. .| +...|..++.++...|+.+++ .+-++++.
T Consensus 542 -~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 542 -RARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp -HHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred -HHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 7899999999999999999874 46 467788888888877775444 44444443
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.75 E-value=5e-07 Score=86.65 Aligned_cols=202 Identities=15% Similarity=0.109 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HH
Q 004244 498 DTITYSSLIHGLCEQRRITEACELFQEMLSRGMS-PD-EFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDV----VT 571 (766)
Q Consensus 498 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~ 571 (766)
+...+..+...+...|++++|+..|+++.+.... |. ...+..+..+|.+.|++++|+..|+++++. .|+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHH
Confidence 4456667788899999999999999999986311 11 356778899999999999999999999976 2332 24
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCC
Q 004244 572 YSVLINGLNKQARTMEAKKLLLKLFYDE-SVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNH 650 (766)
Q Consensus 572 ~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (766)
+..+..++...|.. .+......+ ..-+..-+...+ ..+..++..+-.......|......+...
T Consensus 81 ~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~--------~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-- 145 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----ALQGFFGVDRSDRDPQQARAAF--------SDFSKLVRGYPNSQYTTDATKRLVFLKDR-- 145 (225)
T ss_dssp HHHHHHHHHHHHC-------------------CCHHHHHHH--------HHHHHHHTTCTTCTTHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhhhh-----hhhhhhccchhhcCcHHHHHHH--------HHHHHHHHHCcCChhHHHHHHHHHHHHHH--
Confidence 44555555444321 111111110 000100111111 11222224444444444554444333321
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 004244 651 MPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT----VTIIVLVKALHTAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 651 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (766)
-......++..|.+.|++++|+..|+++++. .|+. ..+..++.++.+.|+.++|+..++++...++
T Consensus 146 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 --LAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 1223346778899999999999999999865 3432 5678899999999999999999999888764
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.74 E-value=8e-08 Score=88.18 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=114.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhch
Q 004244 537 YTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTN 616 (766)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~ 616 (766)
+..+...+.+.|++++|...+++.++. .+.+...+..+...+...|++++|...+++.... .|+... ..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~-~~~~~~--- 81 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSY-KSLIAK--- 81 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHH-HHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHH-HHHHHH---
Confidence 445566677888888888888877654 2345677777888888888888888888877653 233322 222210
Q ss_pred hhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CHHHHHH
Q 004244 617 IEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVP-HTVTIIV 694 (766)
Q Consensus 617 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ 694 (766)
-.+...+...+|+..+++..+. .| +...+..++.++...|++++|+..++++++....+ +...+..
T Consensus 82 ----------~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~ 149 (176)
T 2r5s_A 82 ----------LELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT 149 (176)
T ss_dssp ----------HHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred ----------HHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence 0111222334578888888874 35 68888899999999999999999999998543222 2457888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 004244 695 LVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
++..+...|+.++|...+++++..
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHH
Confidence 899999999999999999988753
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=6.7e-08 Score=85.58 Aligned_cols=102 Identities=5% Similarity=-0.101 Sum_probs=74.3
Q ss_pred CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHH
Q 004244 651 MP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKV 729 (766)
Q Consensus 651 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 729 (766)
.| +...+..++..+.+.|++++|++.|+++++.. +.+...|..++.++...|++++|+..|+++++.+ |.++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence 34 45566777777777888888888888777542 2345677777777778888888888888888777 556667777
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 730 LVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 730 l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
++.+|.+.|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7888888888888888887776654
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.73 E-value=1.7e-07 Score=104.01 Aligned_cols=152 Identities=12% Similarity=0.030 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHH
Q 004244 548 GDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALL 626 (766)
Q Consensus 548 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~ 626 (766)
|++++|.+.+++..+. .+.+...|..+...+...|++++|.+.+++.++. .|+ ...+..+.
T Consensus 3 g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg--------------- 64 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLG--------------- 64 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHH---------------
T ss_pred ccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH---------------
Confidence 5566666666666544 1334556666666666666666666666666653 232 33333333
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---C
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTA---G 703 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g 703 (766)
..|...|++++|.+.+++..+.. +.+...+..++.+|.+.|++++|++.++++++.. +.+...+..++..+... |
T Consensus 65 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 65 RVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccc
Confidence 56666777777777777766632 1256667777777777777777777777776542 22345666677777777 7
Q ss_pred ChHHHHHHHHHHHHcC
Q 004244 704 MNEELSQVIENILRSC 719 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~~ 719 (766)
+.++|...++++++.+
T Consensus 143 ~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQG 158 (568)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcC
Confidence 7777777777777766
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=2.5e-07 Score=79.27 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=82.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
..|.+.|++++|++.|++.++. .| +..+|..++.+|.+.|++++|++.++++++.. +.+...|..++.++...|++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCH
Confidence 6788889999999999888874 34 77888888888889999999999998888653 33457788888888889999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 004244 706 EELSQVIENILRSCRLSDAELAKVLVEI 733 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 733 (766)
++|+..++++++.+ |.+..++..|..+
T Consensus 98 ~~A~~~~~~al~l~-P~~~~a~~~l~~~ 124 (126)
T 4gco_A 98 SKAQRAYEDALQVD-PSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHh
Confidence 99999999998887 5566666666554
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=1.3e-07 Score=81.08 Aligned_cols=104 Identities=8% Similarity=-0.118 Sum_probs=91.9
Q ss_pred CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHH
Q 004244 650 HMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAK 728 (766)
Q Consensus 650 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 728 (766)
+.| ....+...+..|.+.|++++|++.|+++++.. +.+...|..++.++...|++++|+..++++++.+ |.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 456 35678889999999999999999999999653 3456888999999999999999999999999998 67788899
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 729 VLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 729 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
.++.+|...|++++|.+.+++..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 999999999999999999999887643
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=1.2e-07 Score=95.85 Aligned_cols=124 Identities=14% Similarity=-0.042 Sum_probs=95.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHhC---CCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC---CCC--HHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQR---NHMP--NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGF---VPH--TVTIIVLV 696 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~ 696 (766)
..|...|++++|+..|++.++. .-.| ...++..+...|.. |++++|++.++++++... .+. ..++..++
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 6777888888888888877642 1112 24577888999988 999999999999874210 111 36778899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-----hHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 697 KALHTAGMNEELSQVIENILRSCRLS-----DAELAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
..+...|++++|+.+++++++..+.. ....+..++.++...|++++|...+++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999999863111 13467778888899999999999999988
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=4.6e-07 Score=85.92 Aligned_cols=124 Identities=10% Similarity=-0.059 Sum_probs=108.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 706 (766)
..+...|++++|+..|+++. .|+...|..++.+|...|++++|++.++++++.. +.+...+..++..+...|+++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 67889999999999998874 4688899999999999999999999999998653 345678889999999999999
Q ss_pred HHHHHHHHHHHcCCC---------------ChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 707 ELSQVIENILRSCRL---------------SDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 707 ~A~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
+|+..++++++..+. .....+..++.++.+.|++++|.+.+++..+...
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999997532 2347889999999999999999999999988764
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=9.3e-08 Score=84.74 Aligned_cols=96 Identities=7% Similarity=-0.007 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004244 655 AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEIN 734 (766)
Q Consensus 655 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 734 (766)
..+..++..+.+.|++++|++.|++++... +.+...|..++.++...|++++|+..++++++.+ |.+...+..++.+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 334444444445555555555555444321 1233444444444445555555555555554444 33334444445555
Q ss_pred hcCCChhHHHHHHHHHHH
Q 004244 735 HKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 735 ~~~g~~~~A~~~~~~m~~ 752 (766)
...|++++|.+.+++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555444433
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=1.3e-06 Score=82.70 Aligned_cols=128 Identities=9% Similarity=-0.096 Sum_probs=74.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC
Q 004244 573 SVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP 652 (766)
Q Consensus 573 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 652 (766)
..+...+...|++++|.+.|++.+ .|+...+..+. ..|...|++++|+..+++..+.. +.
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg---------------~~~~~~g~~~~A~~~~~~al~~~-~~ 69 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIG---------------CMYTILKNMTEAEKAFTRSINRD-KH 69 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 334445556666666666666552 33444444444 55666666666666666666532 12
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC--------------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSG--------------FVPH-TVTIIVLVKALHTAGMNEELSQVIENILR 717 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (766)
+...|..++.+|...|++++|++.++++++.. ..|+ ...+..++.++...|++++|...++++++
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55566666666666666666666666666432 1111 14556666667777777777777777776
Q ss_pred cCC
Q 004244 718 SCR 720 (766)
Q Consensus 718 ~~~ 720 (766)
..+
T Consensus 150 ~~p 152 (213)
T 1hh8_A 150 MKS 152 (213)
T ss_dssp TCC
T ss_pred cCc
Confidence 653
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=8.4e-06 Score=81.64 Aligned_cols=164 Identities=10% Similarity=0.030 Sum_probs=119.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcH----HhHHH
Q 004244 540 LINAYCTEGDIPQALRLHDEMIQKG-FLPDV----VTYSVLINGLNKQARTMEAKKLLLKLFYDESV-PSD----VIYNT 609 (766)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-p~~----~~~~~ 609 (766)
.+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|+..+++.+..... ++. ..++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566788899999999998887642 12221 12334666667788999999999998874222 221 13444
Q ss_pred HhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 004244 610 LIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ----R-NHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS 683 (766)
Q Consensus 610 ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 683 (766)
+. ..|...|++++|+..|+++.+ . +..+ ...+|..++..|.+.|++++|++.++++++.
T Consensus 161 lg---------------~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 161 IA---------------NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HH---------------HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH---------------HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44 788999999999999998873 1 1222 2447889999999999999999999998742
Q ss_pred ----CCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc
Q 004244 684 ----GFVPH-TVTIIVLVKALHTAGM-NEELSQVIENILRS 718 (766)
Q Consensus 684 ----~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 718 (766)
+..+. ..++..++.++.+.|+ +++|...+++++..
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 22222 4678889999999995 69999999998864
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=1.5e-06 Score=84.22 Aligned_cols=199 Identities=8% Similarity=-0.095 Sum_probs=136.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCC---------------
Q 004244 511 EQRRITEACELFQEMLSRGMSPDEFTYTTL-------INAYCTEGDIPQALRLHDEMIQKGFLPD--------------- 568 (766)
Q Consensus 511 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------------- 568 (766)
..++..+|.+.|.++.... +-....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677777777777777764 4445566666 3445555555555554444443 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHH
Q 004244 569 -------VVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRV 641 (766)
Q Consensus 569 -------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 641 (766)
...+..+...+...|++++|.++|+.+... .|+......+. ..+.+.|++++|+..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a---------------~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKA---------------VVYGAAERWTDVIDQ 157 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHH---------------HHHHHTTCHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHH---------------HHHHHcCCHHHHHHH
Confidence 233445677788899999999999888763 35544332222 578899999999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 642 FELMLQRNHMPN--EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH--TVTIIVLVKALHTAGMNEELSQVIENILR 717 (766)
Q Consensus 642 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (766)
|+...... .|. ...+..+..++.+.|++++|+..|++.......|. ...+...+.++.+.|+.++|...|++++.
T Consensus 158 l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 158 VKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98665531 121 34677889999999999999999999874332254 34677788889999999999999999999
Q ss_pred cCCCChHHHHHHHHH
Q 004244 718 SCRLSDAELAKVLVE 732 (766)
Q Consensus 718 ~~~~~~~~~~~~l~~ 732 (766)
.+|. ..++..|.+
T Consensus 237 ~~P~--~~~~~aL~~ 249 (282)
T 4f3v_A 237 THPE--PKVAAALKD 249 (282)
T ss_dssp HSCC--HHHHHHHHC
T ss_pred cCCc--HHHHHHHhC
Confidence 9843 666655543
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=3.6e-06 Score=84.38 Aligned_cols=171 Identities=13% Similarity=-0.013 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCC
Q 004244 571 TYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNH 650 (766)
Q Consensus 571 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (766)
.+...+..+...|++++|.+.+.+.++.... .......+. ....+...+...|++++|+..+++..+...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQ---------WQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHH---------HHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3444566677888888888888877764222 111100000 001112567788899999999998875321
Q ss_pred ---CCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 651 ---MPN--EAVYDIIIHGHSKVGNVQKAYDLYKKMVRS-GFVPH-----TVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 651 ---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
.+. ..+|+.++..|...|++++|++.++++++. ...|+ ..++..++..+...|++++|..+++++++..
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 122 457889999999999999999999998721 01122 1577889999999999999999999988653
Q ss_pred C-----CChHHHHHHHHHHHhcCCChhHH-HHHHHHHH
Q 004244 720 R-----LSDAELAKVLVEINHKEGNMDAV-LNVLTEMA 751 (766)
Q Consensus 720 ~-----~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 751 (766)
. .....+|..++.+|.+.|++++| ...+++..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1 11367889999999999999999 77677654
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=1.3e-06 Score=78.69 Aligned_cols=122 Identities=7% Similarity=-0.050 Sum_probs=102.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 706 (766)
..+...|++++|...|++..+.. +.+..++..++.++...|++++|++.+++.++.. +.+...+..++..+...|+++
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~ 98 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 98 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHH
Confidence 77889999999999999999753 2378889999999999999999999999998653 345678889999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHH--HHHHHHhcCCChhHHHHHHHHHH
Q 004244 707 ELSQVIENILRSCRLSDAELAK--VLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 707 ~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
+|...++++++.. +.+...+. .++..+.+.|++++|.+.+.+..
T Consensus 99 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 99 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999987 44455553 44455888999999999987754
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=6.2e-07 Score=86.99 Aligned_cols=205 Identities=11% Similarity=-0.064 Sum_probs=145.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH-hhhhchh
Q 004244 546 TEGDIPQALRLHDEMIQKGFLPDVVTYSVL-------INGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTL-IENCTNI 617 (766)
Q Consensus 546 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l-------i~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l-l~~~~~~ 617 (766)
..++.+.|.+.|.++.+.. +-....|..+ ...+...++..+++..+.+.+. +.|+......- .+-++.+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 6899999999999999862 4456788777 4666666666777766666654 34443221111 0000000
Q ss_pred hh------hhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--H
Q 004244 618 EF------QNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH--T 689 (766)
Q Consensus 618 ~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~ 689 (766)
++ +........+...|++++|.++|+.+...+ |+......+...+.+.|+|++|+..|++..... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 00 111223367888999999999999988743 644366677778999999999999998665321 121 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 004244 690 VTIIVLVKALHTAGMNEELSQVIENILRSCR-LS-DAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 756 (766)
..+..+..++...|++++|+..++++..... |. .......++.++.+.|+.++|...|+++.+.+..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 4677889999999999999999999986432 22 5567788999999999999999999999887653
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=7.5e-07 Score=83.60 Aligned_cols=157 Identities=12% Similarity=-0.008 Sum_probs=97.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh----CCCCC-CH
Q 004244 580 NKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ----RNHMP-NE 654 (766)
Q Consensus 580 ~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~ 654 (766)
...|++++|.+.++.+... .......+..+. ..+...|++++|...+++..+ .+..| ..
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~---------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 66 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLG---------------YVYAFMDRFDEARASFQALQQQAQKSGDHTAEH 66 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHH---------------HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3567777777744444321 112233333333 677778888888888877764 22222 34
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-CC--h
Q 004244 655 AVYDIIIHGHSKVGNVQKAYDLYKKMVRS----GFVP--HTVTIIVLVKALHTAGMNEELSQVIENILRSC--R-LS--D 723 (766)
Q Consensus 655 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~--~ 723 (766)
.++..+...+...|++++|.+.+++.++. +-.| ....+..++..+...|++++|...++++++.. . .+ .
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 56777778888888888888888876632 1111 12456677777888888888888888877541 1 11 1
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 724 AELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 724 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
...+..++.++...|++++|.+.+++..+
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33456777888888888888887776554
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=5.7e-07 Score=79.55 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=77.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
..+...|++++|+..|+++++. .| +...|..++.+|...|++++|++.|+++++.. +.+...|..++.++...|++
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 6788899999999999999884 35 78889999999999999999999999998653 23457888899999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 004244 706 EELSQVIENILRSCR 720 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~ 720 (766)
++|+..|+++++..+
T Consensus 121 ~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 121 LKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999999873
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=4.1e-07 Score=83.40 Aligned_cols=127 Identities=8% Similarity=0.038 Sum_probs=104.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKA-LHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~ 705 (766)
..+...|++++|+..+++..+.. +.+...|..++..|...|++++|++.++++++.. +.+...+..++.. +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 44667899999999999988753 2378899999999999999999999999998653 3355777888888 7789998
Q ss_pred --HHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 004244 706 --EELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 706 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 756 (766)
++|...++++++.+ |.+...+..++.+|...|++++|...++++.+....
T Consensus 96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 99999999999997 566788889999999999999999999999887654
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=1.6e-06 Score=74.69 Aligned_cols=110 Identities=15% Similarity=0.026 Sum_probs=93.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 706 (766)
..+...|++++|+..++++.+.. +.+...+..++.++...|++++|++.++++++.. +.+...+..++..+...|+++
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~ 101 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYT 101 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHH
Confidence 78889999999999999999753 2278889999999999999999999999998653 345678888999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Q 004244 707 ELSQVIENILRSCRLSDAELAKVLVEINHKEGN 739 (766)
Q Consensus 707 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 739 (766)
+|...++++++.. +.+...+..++.++...|+
T Consensus 102 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 102 KAMDVYQKALDLD-SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcC
Confidence 9999999999987 5566777788888876664
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=3.6e-07 Score=90.97 Aligned_cols=192 Identities=10% Similarity=-0.048 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhh
Q 004244 535 FTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPS-DVIYNTLIEN 613 (766)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~ 613 (766)
..+..+...+.+.|++++|...+++.++. .+.+...|..+..++.+.|++++|...+++.++. .|+ ...+..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg-- 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG-- 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH--
Confidence 34444555555555555555555555543 1224455555555555555555555555555542 222 22222222
Q ss_pred hchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHH
Q 004244 614 CTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTI 692 (766)
Q Consensus 614 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 692 (766)
.+|...|++++|+..|+++.+.. | +...+...+....+ ..++.. +..........+....
T Consensus 80 -------------~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~ 140 (281)
T 2c2l_A 80 -------------QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELH 140 (281)
T ss_dssp -------------HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHH
T ss_pred -------------HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHH
Confidence 45555566666666655555421 2 10011111111111 011111 1112222233333333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcC-CChhHHHHHHHHHHHC
Q 004244 693 IVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKE-GNMDAVLNVLTEMAKD 753 (766)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 753 (766)
..+... ..|+.++|++.++++++.+ +.+......+...+.+. +.+++|.++|.++.+.
T Consensus 141 ~~l~~l--~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 141 SYLTRL--IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHH--HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHH--HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 333222 2577777777777777665 44444445555555544 5667777777766553
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.53 E-value=9.9e-07 Score=73.30 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--hHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLS--DAELAKVL 730 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 730 (766)
+...+..++..+...|++++|+..++++++.. +.+...+..++..+...|++++|...++++++.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45667788888999999999999999988653 3455778888999999999999999999999887 55 67888899
Q ss_pred HHHHhcC-CChhHHHHHHHHHHHCCCCC
Q 004244 731 VEINHKE-GNMDAVLNVLTEMAKDGLLP 757 (766)
Q Consensus 731 ~~~~~~~-g~~~~A~~~~~~m~~~~~~~ 757 (766)
+.++... |++++|.+.+++..+.+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999999 99999999999988877644
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=2.4e-06 Score=72.46 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=90.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 706 (766)
..+...|++++|.+.++++.+.. +.+..++..++..+...|++++|+..++++.+.. +.+..++..++..+...|+++
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 94 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYD 94 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHH
Confidence 78889999999999999998753 2367888899999999999999999999998653 345678888999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHhcCC
Q 004244 707 ELSQVIENILRSCRLSDAELAKVLVEINHKEG 738 (766)
Q Consensus 707 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 738 (766)
+|..+++++++.. |.+...+..++.++...|
T Consensus 95 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 95 EAIEYYQKALELD-PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcc
Confidence 9999999999987 556667777777765543
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=2.2e-06 Score=73.49 Aligned_cols=111 Identities=13% Similarity=-0.010 Sum_probs=95.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 706 (766)
..+...|++++|+..++++.+.. +.+...+..++.++...|++++|++.++++.+.. +.+...+..++..+...|+++
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 97 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHV 97 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHH
Confidence 78889999999999999998753 2378889999999999999999999999998653 344678888999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Q 004244 707 ELSQVIENILRSCRLSDAELAKVLVEINHKEGNM 740 (766)
Q Consensus 707 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 740 (766)
+|...++++++.. |.+...+..++.++.+.|++
T Consensus 98 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 98 EAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999997 56677888899998888775
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=1.2e-06 Score=89.71 Aligned_cols=124 Identities=10% Similarity=-0.000 Sum_probs=105.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPN--------------EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTI 692 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 692 (766)
..+.+.|++++|+..|++.++...... ..+|..++.+|.+.|++++|++.++++++.. +.+...+
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~ 233 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGL 233 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 788999999999999999998432211 5889999999999999999999999999653 3456888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHH-HHHHHHHHH
Q 004244 693 IVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAV-LNVLTEMAK 752 (766)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 752 (766)
..++.++...|++++|+..++++++.. |.+..++..++.++.+.|+.++| .+++++|.+
T Consensus 234 ~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 234 SRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998 56778889999999999999999 445565543
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.48 E-value=2.1e-05 Score=78.71 Aligned_cols=166 Identities=11% Similarity=0.071 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--
Q 004244 500 ITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDE------FTYTTLINAYCTEGDIPQALRLHDEMIQKGF---LPD-- 568 (766)
Q Consensus 500 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~-- 568 (766)
..+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34455666778888899998888887775322 22 2234456667788899999999998885421 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCc-H----HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHH
Q 004244 569 VVTYSVLINGLNKQARTMEAKKLLLKLFYD-ESVPS-D----VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVF 642 (766)
Q Consensus 569 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~p~-~----~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 642 (766)
..+|+.+...|...|++++|...+++.+.. ...|+ . .++..+. ..|...|++++|+..+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg---------------~~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA---------------KALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH---------------HHHHHHhhHHHHHHHH
Confidence 457888899999999999999999988731 01111 1 2333333 6677777777777777
Q ss_pred HHHHhCC----CCC-CHHHHHHHHHHHhccCChHHH-HHHHHHHH
Q 004244 643 ELMLQRN----HMP-NEAVYDIIIHGHSKVGNVQKA-YDLYKKMV 681 (766)
Q Consensus 643 ~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 681 (766)
++..+.. ... -..+|..++.+|.+.|++++| ...++++.
T Consensus 220 ~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7665421 111 145566666667777777776 55566554
No 139
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.48 E-value=1.3e-06 Score=76.74 Aligned_cols=92 Identities=9% Similarity=-0.015 Sum_probs=47.8
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004244 625 LLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAG 703 (766)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 703 (766)
+...+...|++++|+..|+++... .| +...|..++.+|.+.|++++|+..|+++++.. +.+...+..++.++...|
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 334455555555555555555542 22 44555555555555555555555555555432 222344445555555555
Q ss_pred ChHHHHHHHHHHHHcC
Q 004244 704 MNEELSQVIENILRSC 719 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~~ 719 (766)
++++|...++++++..
T Consensus 101 ~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 101 DLDGAESGFYSARALA 116 (142)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 5555555555555543
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.7e-06 Score=73.99 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=57.6
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004244 624 ALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAG 703 (766)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 703 (766)
.+...+...|++++|+..|++.++.. +.+...|..++.++.+.|++++|++.++++++.. +.+...+..++.++...|
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHh
Confidence 34455666666666766666666532 1155666666666666666666666666666432 223455666666666666
Q ss_pred ChHHHHHHHHHHHHcC
Q 004244 704 MNEELSQVIENILRSC 719 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~~ 719 (766)
++++|+..++++++.+
T Consensus 87 ~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 87 EYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666666654
No 141
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.45 E-value=6.6e-05 Score=75.36 Aligned_cols=234 Identities=7% Similarity=-0.020 Sum_probs=148.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-ChHHH
Q 004244 477 SQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQR-RITEACELFQEMLSRGMSPDEFTYTTLINAYCTE-G-DIPQA 553 (766)
Q Consensus 477 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g-~~~~A 553 (766)
.+..++|++++++++..+.. +..+|+.--..+...| .+++++..++.++... +-+..+|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 33445677777777776544 5566666666666666 4788888888887764 55666676666666665 6 77788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHH
Q 004244 554 LRLHDEMIQKGFLPDVVTYSVLINGLNKQARTM--------EAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAAL 625 (766)
Q Consensus 554 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l 625 (766)
+++++.+++. .+-+...|+--...+.+.|.++ ++++.++++++.. .-|...|+-..
T Consensus 145 L~~~~k~L~~-dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~-------------- 208 (349)
T 3q7a_A 145 IEYIHGSLLP-DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRW-------------- 208 (349)
T ss_dssp HHHHHHHTSS-CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH--------------
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHH--------------
Confidence 8888888765 2446666665555555555555 8899999988752 23555555544
Q ss_pred HhhhhhcCC-------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCh--------------------HHHHHHH
Q 004244 626 LKGFCMKGL-------MNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNV--------------------QKAYDLY 677 (766)
Q Consensus 626 ~~~~~~~g~-------~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~ 677 (766)
..+.+.++ ++++++.+++++.. .| |...|+.+-..+.+.|+. .+..++.
T Consensus 209 -~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (349)
T 3q7a_A 209 -YLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFG 285 (349)
T ss_dssp -HHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------
T ss_pred -HHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHH
Confidence 34444454 68899999998874 35 788888877777766654 2223333
Q ss_pred HHHHHcC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004244 678 KKMVRSG-----FVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLV 731 (766)
Q Consensus 678 ~~m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 731 (766)
.++...+ ..+....+..+++.+...|+.++|.++++.+.+.--|.....|...+
T Consensus 286 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 286 FPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 3332211 12455667778888888888888888888887542144455554433
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.45 E-value=8.1e-05 Score=74.74 Aligned_cols=231 Identities=11% Similarity=0.030 Sum_probs=139.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 004244 443 GRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQ-ELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQ-R-RITEAC 519 (766)
Q Consensus 443 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~~~A~ 519 (766)
+..++|+++++.++..++. +..+|+.--..+...| .++++++.++.+.....+ +..+|+.-...+... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445666666666665443 5555666555555566 477777777777766544 566666655555555 5 667777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------
Q 004244 520 ELFQEMLSRGMSPDEFTYTTLINAYCTEGDIP--------QALRLHDEMIQKGFLPDVVTYSVLINGLNKQAR------- 584 (766)
Q Consensus 520 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~------- 584 (766)
++++.+++.. +-|..+|+--...+.+.|.++ ++++.++++++.. +-|...|+.-...+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 7777777654 445666655555555555555 7888888887753 4566777777777766665
Q ss_pred HHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCH--------------------HHHHHHHHH
Q 004244 585 TMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLM--------------------NEADRVFEL 644 (766)
Q Consensus 585 ~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~ 644 (766)
++++++.+++++.. .+-|...|+-+- ..+.+.|+. .+..+....
T Consensus 224 ~~eELe~~~~aI~~-~P~n~SaW~Ylr---------------~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (349)
T 3q7a_A 224 LQDELIYILKSIHL-IPHNVSAWNYLR---------------GFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFP 287 (349)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHH---------------HHHHHTTCCSGGGHHHHGGGTC--------------CC
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHH---------------HHHHhcCCCcccccccccccccccccccchhHHHHHHH
Confidence 67888888888764 223444454433 222333322 222233333
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHH
Q 004244 645 MLQRN-----HMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIV 694 (766)
Q Consensus 645 ~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ 694 (766)
+...+ ..++...+..+++.|.+.|+.++|.++++.+.++ ..|-. ..|..
T Consensus 288 ~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~ 342 (349)
T 3q7a_A 288 MPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEF 342 (349)
T ss_dssp CCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHH
T ss_pred HHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHH
Confidence 33221 1357888899999999999999999999998754 33433 44443
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.43 E-value=8.8e-05 Score=74.12 Aligned_cols=199 Identities=10% Similarity=-0.023 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 004244 515 ITEACELFQEMLSRGMSPDEFTYTTLINAYCTEG--DIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQAR-TMEAKKL 591 (766)
Q Consensus 515 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l 591 (766)
+++++.+++.++... +-+..+|+.-...+.+.| .+++++.+++.+.+. .+-+...|+--...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 466666777666653 445666666666666666 367777777777765 24456666655555566666 4777777
Q ss_pred HHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhh-----------hhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 004244 592 LLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGF-----------CMKGLMNEADRVFELMLQRNHMP-NEAVYDI 659 (766)
Q Consensus 592 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~-----------~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 659 (766)
++++++.. +-|...|+-.... +... ...+.++++++.+.+.+.. .| |..+|+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~l------------l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y 232 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCL------------LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFY 232 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHH------------HHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHH------------HHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 77777642 2233344333310 0111 0114578999999999974 35 7888887
Q ss_pred HHHHHhcc-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHhcCChHHHHHHHHHHHHcCCCCh
Q 004244 660 IIHGHSKV-----------GNVQKAYDLYKKMVRSGFVPHTVTIIVLVK-----ALHTAGMNEELSQVIENILRSCRLSD 723 (766)
Q Consensus 660 l~~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~ 723 (766)
+-..+.+. +.++++++.++++++. .||. .|..+.. +....|..++...+++++.+.+ |..
T Consensus 233 ~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r 308 (331)
T 3dss_A 233 HRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMR 308 (331)
T ss_dssp HHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGG
T ss_pred HHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cch
Confidence 66666655 4578999999999954 5776 3432222 2224678889999999999998 566
Q ss_pred HHHHHHHHHHH
Q 004244 724 AELAKVLVEIN 734 (766)
Q Consensus 724 ~~~~~~l~~~~ 734 (766)
...|..+...+
T Consensus 309 ~~~y~d~~~~~ 319 (331)
T 3dss_A 309 AAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 77776655433
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=1.3e-06 Score=74.92 Aligned_cols=93 Identities=12% Similarity=0.034 Sum_probs=47.9
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCC----HHHHHHHHH
Q 004244 625 LLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSG--FVPH----TVTIIVLVK 697 (766)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~l~~ 697 (766)
|-..+.+.|++++|++.|++.++. .| +...|..++.+|.+.|++++|++.++++++.. ..++ ..+|..++.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 334555556666666666555552 23 45555555555666666666666555554321 0111 123444555
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 004244 698 ALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
++...|++++|+..++++++..
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHhhC
Confidence 5555555555555555555543
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.42 E-value=3.5e-07 Score=85.69 Aligned_cols=126 Identities=15% Similarity=0.010 Sum_probs=92.2
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPN----------------EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTV 690 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 690 (766)
..+...|++++|+..|++..+.... + ...|..++.+|.+.|++++|+..++++++.. +.+..
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 123 (198)
T 2fbn_A 46 NEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVK 123 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHH
Confidence 5666777777777777777763211 2 2678889999999999999999999998653 34557
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHH-HHHHHHHHCCC
Q 004244 691 TIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVL-NVLTEMAKDGL 755 (766)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~~ 755 (766)
.+..++.++...|++++|+..++++++.. |.+..++..+..++...|+.+++. ..+..|...|.
T Consensus 124 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 124 ALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88899999999999999999999999997 566788888999999888888887 55666665554
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=2.6e-06 Score=79.81 Aligned_cols=157 Identities=14% Similarity=-0.055 Sum_probs=97.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc-HHhHHHHhhhhchhhhh
Q 004244 546 TEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYD----ESVPS-DVIYNTLIENCTNIEFQ 620 (766)
Q Consensus 546 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~ 620 (766)
..|++++|.+.++.+... .......+..+...+...|++++|...+++.+.. +..|. ...+..+.
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~--------- 73 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG--------- 73 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---------
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH---------
Confidence 456666666644333321 1123455566666666666777666666665541 11111 11222222
Q ss_pred hHHHHHhhhhhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC---CCCC--H
Q 004244 621 NVAALLKGFCMKGLMNEADRVFELMLQR----NHMP--NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSG---FVPH--T 689 (766)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~ 689 (766)
..+...|++++|...+++..+. +..| ....+..++..+...|++++|.+.+++.++.. -.+. .
T Consensus 74 ------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 74 ------MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp ------HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 6777888888888888776642 2122 24457888899999999999999999887321 1122 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 690 VTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
.++..++..+...|++++|...++++++.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34577888999999999999999998865
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.38 E-value=5.4e-06 Score=71.91 Aligned_cols=99 Identities=8% Similarity=-0.115 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVE 732 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 732 (766)
+...|..++..+...|++++|+..|+++++.. +.+...+..++..+...|++++|...++++++.+ |.+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44555555555556666666666665555432 2233455555555555666666666666665554 344555555566
Q ss_pred HHhcCCChhHHHHHHHHHHHC
Q 004244 733 INHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 733 ~~~~~g~~~~A~~~~~~m~~~ 753 (766)
++...|++++|.+.+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 666666666666555555443
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.38 E-value=1.7e-06 Score=76.42 Aligned_cols=91 Identities=11% Similarity=0.002 Sum_probs=80.6
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
..+...|++++|+..|+++.+. .| +...|..++.+|...|++++|++.|+++++.. +.+...+..++.++...|++
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 7888999999999999999974 35 78899999999999999999999999998653 33457888899999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 004244 706 EELSQVIENILRSCR 720 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~ 720 (766)
++|+..++++++..+
T Consensus 106 ~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 106 AEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc
Confidence 999999999998863
No 149
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.37 E-value=1.2e-05 Score=72.32 Aligned_cols=129 Identities=12% Similarity=-0.015 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 465 VSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAY 544 (766)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 544 (766)
..+..+...+...|++++|...+++....... +...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44555666677777777777777777665432 56667777777777778888877777777654 44566777777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 004244 545 CTEGDIPQALRLHDEMIQKGFLPDVVTYSV--LINGLNKQARTMEAKKLLLKLF 596 (766)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~--li~~~~~~g~~~~A~~l~~~~~ 596 (766)
...|++++|...+++..+.. +.+...+.. .+..+...|++++|.+.+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 78888888888887777652 334444433 3333666788888887777654
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.36 E-value=7.1e-06 Score=70.07 Aligned_cols=100 Identities=8% Similarity=-0.074 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVE 732 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 732 (766)
+...|...+..+.+.|++++|++.|+++++.. +.+...|..++.++...|++++|+..++++++.+ |.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 35567888999999999999999999999653 3456889999999999999999999999999998 667888999999
Q ss_pred HHhcCCChhHHHHHHHHHHHCC
Q 004244 733 INHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 733 ~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
++...|++++|.+.+++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999987754
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=4.1e-06 Score=75.53 Aligned_cols=98 Identities=11% Similarity=-0.038 Sum_probs=82.4
Q ss_pred hhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004244 620 QNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKA 698 (766)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 698 (766)
..+..+...+...|++++|+..|++.++. .| +...|..++.+|.+.|++++|++.++++++.. +.+...|..++.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34556667888999999999999999874 34 78889999999999999999999999998653 3345788889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCC
Q 004244 699 LHTAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~~~ 720 (766)
+...|++++|+..++++++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999999998873
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=2.5e-06 Score=72.35 Aligned_cols=96 Identities=11% Similarity=-0.048 Sum_probs=70.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhc
Q 004244 657 YDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHK 736 (766)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 736 (766)
+..++..+.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..++++++.+ |.+...+..++.+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4456667778888888888888877542 2345677777888888888888888888888877 4556677778888888
Q ss_pred CCChhHHHHHHHHHHHCC
Q 004244 737 EGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 737 ~g~~~~A~~~~~~m~~~~ 754 (766)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 888888888888776654
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=7.6e-06 Score=68.49 Aligned_cols=109 Identities=18% Similarity=0.105 Sum_probs=73.8
Q ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004244 622 VAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHT 701 (766)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 701 (766)
+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|.+.++++.+.. +.+...+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3445566777788888888887777642 1266677777777777888888888887777542 2345667777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 004244 702 AGMNEELSQVIENILRSCRLSDAELAKVLVEI 733 (766)
Q Consensus 702 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 733 (766)
.|++++|...++++++.+ |.+...+..+..+
T Consensus 85 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 888888888888877776 3445555444443
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.32 E-value=3.1e-06 Score=84.10 Aligned_cols=194 Identities=12% Similarity=0.007 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004244 429 IVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHG 508 (766)
Q Consensus 429 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 508 (766)
...+..+...+.+.|++++|...++...+.... +...|..+...|.+.|++++|...+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344555555666666666666666666654322 5566666666666666777776666666655322 45566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004244 509 LCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEA 588 (766)
Q Consensus 509 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 588 (766)
+...|++++|...|++..+.+ +.+...+...+....+. .++.. +........+.+......+... ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 777777777777776665532 10100111111111111 11111 1112222233344433333222 25777777
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhc-CCHHHHHHHHHHHHh
Q 004244 589 KKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMK-GLMNEADRVFELMLQ 647 (766)
Q Consensus 589 ~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 647 (766)
++.+++..+ ..|+.......+. ..+... +.+++|.++|.++.+
T Consensus 155 ~~~~~~al~--~~p~~~~~~~~l~--------------~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHE--GHEDDGHIRAQQA--------------CIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGT--TTSCHHHHTHHHH--------------HHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhc--cccchhhhhhHHH--------------HHHHHHHHHHHHHHHHHHhhhc
Confidence 777777665 3454433322221 223333 556777777776654
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=2.2e-05 Score=66.38 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 465 VSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAY 544 (766)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 544 (766)
..+..+...+...|++++|.+.++++..... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3444444445555555555555555444321 134444455555555555555555555554432 33444455555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 004244 545 CTEGDIPQALRLHDEMIQ 562 (766)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~ 562 (766)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555544
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=1.8e-05 Score=66.16 Aligned_cols=101 Identities=10% Similarity=-0.066 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVE 732 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 732 (766)
....+..++..+...|++++|++.++++.+.. +.+...+..++..+...|++++|...++++++.. +.+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45667888999999999999999999998653 3456788889999999999999999999999997 567888899999
Q ss_pred HHhcCCChhHHHHHHHHHHHCCC
Q 004244 733 INHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 733 ~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
++...|++++|.+.+++..+.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCC
Confidence 99999999999999999887654
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.4e-05 Score=82.09 Aligned_cols=167 Identities=11% Similarity=0.032 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCcHHh---HHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh
Q 004244 572 YSVLINGLNKQARTMEAKKLLLKLFYD-ESVPSDVI---YNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ 647 (766)
Q Consensus 572 ~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~p~~~~---~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (766)
+..++..|...|++++|.+.+.++... +..++..+ ....++ ..+...|+.++|..+++....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~a~~~~~~~~~ 123 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIE--------------KFEQVPDSLDDQIFVCEKSIE 123 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHH--------------HHCSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH--------------HHHhCCCCHHHHHHHHHHHHH
Confidence 455666777777777777777666542 01111111 111111 445567888888888877653
Q ss_pred ----CCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004244 648 ----RNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS--GF--VPH-TVTIIVLVKALHTAGMNEELSQVIENILR 717 (766)
Q Consensus 648 ----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (766)
.+..+ -..++..++..|...|++++|..+++++... +. .+. ..++..++..|...|++++|..++++++.
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 124 FAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22223 2456778888899999999999998887632 21 122 25677888888899999999999988875
Q ss_pred cC---CCC---hHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 718 SC---RLS---DAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 718 ~~---~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
.. ..+ ....+..++..+...|++++|...+.+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 204 AANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 41 112 145567777888888999999887766543
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=2.4e-05 Score=68.70 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=83.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPN----EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTA 702 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 702 (766)
..+...|++++|+..|++..+. .|+ ...|..++.+|...|++++|++.++++++.. +.+...+..++.++...
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 112 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKL 112 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHc
Confidence 7788899999999999998874 455 6778888888999999999999999988642 33457778888889999
Q ss_pred CChHHHHHHHHHHHHcCCCChHHHHHHHHHHHh
Q 004244 703 GMNEELSQVIENILRSCRLSDAELAKVLVEINH 735 (766)
Q Consensus 703 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 735 (766)
|++++|...++++++.. |.+...+..+.....
T Consensus 113 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 113 GRLDQAVLDLQRCVSLE-PKNKVFQEALRNISG 144 (148)
T ss_dssp TCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHh
Confidence 99999999999999887 455566655555543
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=6.6e-06 Score=70.39 Aligned_cols=101 Identities=11% Similarity=-0.022 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------hHHHH
Q 004244 654 EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLS------DAELA 727 (766)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~ 727 (766)
...+..++..+.+.|++++|++.|+++++.. +-+...|..++.++...|++++|+..++++++.++.. -..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4567789999999999999999999999653 3345788899999999999999999999999875322 14578
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 728 KVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 728 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
..++.++...|++++|++.+++......
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 8999999999999999999999877543
No 160
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.26 E-value=2.2e-05 Score=67.36 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004244 431 TYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLC 510 (766)
Q Consensus 431 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 510 (766)
.+..+...+...|++++|...++...+.... +...+..+...|...|++++|...+++..+.... +...+..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHH
Confidence 3444444444444444444444444443211 3444444444444455555555555444443211 3344444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004244 511 EQRRITEACELFQEMLS 527 (766)
Q Consensus 511 ~~g~~~~A~~~~~~m~~ 527 (766)
..|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555544444
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=0.00063 Score=67.93 Aligned_cols=149 Identities=9% Similarity=-0.024 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 004244 445 VEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQ--ELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRR-ITEACEL 521 (766)
Q Consensus 445 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~ 521 (766)
+++++.+++.+....++ +..+|+.-...+.+.+ .+++++.+++++.+.... |..+|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45566666666655433 5566665555555555 366777777777666544 66666666555666666 4677777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 004244 522 FQEMLSRGMSPDEFTYTTLINAYCTE--------------GDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQ----- 582 (766)
Q Consensus 522 ~~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~----- 582 (766)
++.+++.. +-|...|+.....+.+. +.++++++.+...+.. .+-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhccCccc
Confidence 77776654 44555665555444433 3466677777777654 244555665444333333
Q ss_pred ------CCHHHHHHHHHHHHh
Q 004244 583 ------ARTMEAKKLLLKLFY 597 (766)
Q Consensus 583 ------g~~~~A~~l~~~~~~ 597 (766)
+.++++++.++++++
T Consensus 246 ~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh
Confidence 234455555555554
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.25 E-value=5.6e-06 Score=72.54 Aligned_cols=100 Identities=9% Similarity=0.028 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVE 732 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 732 (766)
+...+..++..+.+.|++++|++.|++++... +.+...|..++.++...|++++|+..++++++.+ |.+...+..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 45667778889999999999999999998653 3456788899999999999999999999999998 667788889999
Q ss_pred HHhcCCChhHHHHHHHHHHHCC
Q 004244 733 INHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 733 ~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
+|...|++++|.+.+++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999987654
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.25 E-value=8.5e-06 Score=71.17 Aligned_cols=93 Identities=10% Similarity=-0.021 Sum_probs=60.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 004244 657 YDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-------------TVTIIVLVKALHTAGMNEELSQVIENILRS----- 718 (766)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 718 (766)
+...+..+.+.|++++|++.|+++++. .|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344555566666666666666666532 222 126666777777777777777777777776
Q ss_pred --CCCChHHHH----HHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 719 --CRLSDAELA----KVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 719 --~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
+ |.+...| ...+.++...|++++|+..|++..+
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6 4566666 7777777777777777777776654
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=2.7e-05 Score=66.42 Aligned_cols=60 Identities=7% Similarity=0.016 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 501 TYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMI 561 (766)
Q Consensus 501 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 561 (766)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333333333444444444444333321 2223333333344444444444444444433
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=2.5e-05 Score=70.30 Aligned_cols=101 Identities=10% Similarity=-0.018 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVE 732 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 732 (766)
+...|..++..+.+.|++++|++.|+++++.. +.+...|..++.++...|++++|+..++++++.+ +.+...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56778889999999999999999999999653 3356888899999999999999999999999998 667889999999
Q ss_pred HHhcCCChhHHHHHHHHHHHCCC
Q 004244 733 INHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 733 ~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
+|...|++++|.+.+++..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999887653
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.6e-05 Score=69.87 Aligned_cols=100 Identities=10% Similarity=-0.064 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH----TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAK 728 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 728 (766)
+...+..++..+...|++++|++.++++++. .|+ ...+..++..+...|++++|+..++++++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 6788889999999999999999999999954 566 5778889999999999999999999999987 56688889
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 729 VLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 729 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
.++.++...|++++|.+.+++..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999887643
No 167
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.23 E-value=6.3e-06 Score=75.36 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=76.2
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 004244 475 SRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINA-YCTEGDI--P 551 (766)
Q Consensus 475 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 551 (766)
...|++++|...+++...... .+...|..+...+...|++++|...|++..+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 345666666666666665532 255666666777777777777777777766653 3455566666666 6667776 7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004244 552 QALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYD 598 (766)
Q Consensus 552 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 598 (766)
+|...++++++.. +.+...+..+...+...|++++|...+++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777776652 334566666777777777777777777777663
No 168
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.19 E-value=3.1e-05 Score=79.11 Aligned_cols=130 Identities=14% Similarity=0.062 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004244 465 VSYSTIISGFSRSQELDKAFDTKREMVEKGVLPD--------------TITYSSLIHGLCEQRRITEACELFQEMLSRGM 530 (766)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 530 (766)
..+..+...|.+.|++++|+..|++......... ...|..+..++.+.|++++|+..+++.++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444444555555555555555555554432211 4667777777778888888888888777764
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 004244 531 SPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEA-KKLLLKLF 596 (766)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A-~~l~~~~~ 596 (766)
+.+...+..+..+|...|++++|+..|++.++. .+.+...+..+..++.+.|+.++| ...+.+|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778888888888888888887765 244566777777777777777777 44555554
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=1.4e-05 Score=69.19 Aligned_cols=91 Identities=10% Similarity=0.007 Sum_probs=80.6
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 706 (766)
..+...|++++|+..|++.++.. +.+...|..++.++...|++++|+..++++++.. +.+...+..++.++...|+++
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 94 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYD 94 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHH
Confidence 78899999999999999999853 2268899999999999999999999999999653 335678889999999999999
Q ss_pred HHHHHHHHHHHcC
Q 004244 707 ELSQVIENILRSC 719 (766)
Q Consensus 707 ~A~~~~~~~~~~~ 719 (766)
+|+..++++++..
T Consensus 95 ~A~~~~~~a~~~~ 107 (137)
T 3q49_B 95 EAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
Confidence 9999999999875
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=3.5e-06 Score=90.60 Aligned_cols=118 Identities=8% Similarity=-0.024 Sum_probs=98.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
..+...|++++|++.++++++. .| +..+|..++.+|.+.|++++|++.++++++.. +.+...+..++.++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 6778899999999999999985 35 68899999999999999999999999999753 33457888999999999999
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHH--HhcCCChhHHHHHHH
Q 004244 706 EELSQVIENILRSCRLSDAELAKVLVEI--NHKEGNMDAVLNVLT 748 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 748 (766)
++|...++++++.. |.+...+..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999987 4555566667766 888999999999988
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=2e-05 Score=67.32 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=69.6
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 004244 625 LLKGFCMKGLMNEADRVFELMLQRNHMPNE---AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH----TVTIIVLVK 697 (766)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~ 697 (766)
+...+...|++++|+..|+++.+.... +. ..+..++.++.+.|++++|++.++++++.. |+ ...+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 445677888888888888888864311 23 467778888888888888888888887643 33 456777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 004244 698 ALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
++...|++++|...++++++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888888876
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=1.2e-05 Score=68.70 Aligned_cols=111 Identities=11% Similarity=0.043 Sum_probs=83.1
Q ss_pred hHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 004244 621 NVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGF--VPH----TVTIIV 694 (766)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~ 694 (766)
.+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|+..++++++... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34456677888999999999999888753 23677888888889999999999999998875421 122 567778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004244 695 LVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEIN 734 (766)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 734 (766)
++..+...|++++|...++++++..+ +......+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Confidence 88888899999999999999988763 455555454443
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.1e-05 Score=72.12 Aligned_cols=127 Identities=14% Similarity=0.061 Sum_probs=99.2
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHM-PN----EAVYDIIIHGHSKVGNVQKAYDLYKKMVRS----GFVPH-TVTIIVLV 696 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~ 696 (766)
..+...|++++|+..+++..+.... ++ ..++..++..+...|++++|.+.++++++. +..+. ...+..++
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 96 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 96 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 7888999999999999988753111 12 247788999999999999999999998742 11111 35677888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC-----CCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 004244 697 KALHTAGMNEELSQVIENILRSC-----RLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 753 (766)
..+...|++++|..+++++++.. .+.....+..++..+...|++++|.+.+++..+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 97 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999988652 1123566788999999999999999999887653
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.11 E-value=1.4e-05 Score=67.61 Aligned_cols=91 Identities=12% Similarity=-0.005 Sum_probs=78.5
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN 705 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 705 (766)
..+.+.|++++|+..|+++++. .| +...|..++.++...|++++|+..++++++.. +-+...+..++.++...|++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 6788999999999999999984 35 78899999999999999999999999999653 23457888999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 004244 706 EELSQVIENILRSCR 720 (766)
Q Consensus 706 ~~A~~~~~~~~~~~~ 720 (766)
++|+..++++++.++
T Consensus 102 ~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 102 NAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999998763
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=1.9e-05 Score=70.94 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=86.3
Q ss_pred hHHHHHhhhhhcCCHHHHHHHHHHHHhC--------CC--------CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 004244 621 NVAALLKGFCMKGLMNEADRVFELMLQR--------NH--------MP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS 683 (766)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 683 (766)
.+...-..+.+.|++++|+..|.+.++. .. .| +...|..++.+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3445567788999999999999998863 00 12 3467888899999999999999999999865
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChH-HHHHHHHHHHh
Q 004244 684 GFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDA-ELAKVLVEINH 735 (766)
Q Consensus 684 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 735 (766)
. +.+...|..++.++...|++++|+..++++++.+| .+. .+...+..+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP-AAASVVAREMKIVTE 143 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 3 33457888899999999999999999999999984 444 55555544443
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.08 E-value=3e-05 Score=64.04 Aligned_cols=93 Identities=13% Similarity=0.012 Sum_probs=81.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc-C
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVP--HTVTIIVLVKALHTA-G 703 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~-g 703 (766)
..+...|++++|+..++++.+.. +.+...|..++.++...|++++|++.++++++.. +. +...+..++..+... |
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~ 91 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEG 91 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSS
T ss_pred HHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhC
Confidence 77889999999999999999753 2378889999999999999999999999999653 23 468888999999999 9
Q ss_pred ChHHHHHHHHHHHHcCCC
Q 004244 704 MNEELSQVIENILRSCRL 721 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~~~~ 721 (766)
++++|.+.+++++...+.
T Consensus 92 ~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 92 KEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp CSHHHHHHHHHHGGGCCC
T ss_pred CHHHHHHHHHHHhhcccC
Confidence 999999999999998744
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.08 E-value=1.9e-05 Score=84.55 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=100.6
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-C---------------HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-N---------------EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTV 690 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 690 (766)
..+.+.|++++|+..|+++++. .| + ...|..+..+|.+.|++++|+..++++++.. +.+..
T Consensus 276 ~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 352 (457)
T 1kt0_A 276 TVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEK 352 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHH
Confidence 7888999999999999999974 23 3 5889999999999999999999999999653 33567
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHH-HHHHHHHC
Q 004244 691 TIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLN-VLTEMAKD 753 (766)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~~ 753 (766)
.|..++.++...|++++|+..|+++++.. |.+..++..+..++.+.|+.++|.+ .+++|..+
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999999999998 6677888999999999999988864 34444433
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=6.5e-06 Score=69.25 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=70.4
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 004244 631 MKGLMNEADRVFELMLQRNH-MP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEEL 708 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 708 (766)
..|++++|+..|+++++.+. .| +..+|..++.+|...|++++|++.++++++.. +-+...+..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35888999999999998531 24 56788899999999999999999999998653 33457788899999999999999
Q ss_pred HHHHHHHHHcCC
Q 004244 709 SQVIENILRSCR 720 (766)
Q Consensus 709 ~~~~~~~~~~~~ 720 (766)
+..++++++..+
T Consensus 81 ~~~~~~al~~~p 92 (117)
T 3k9i_A 81 VELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC
Confidence 999999998863
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=5.8e-06 Score=69.55 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=72.3
Q ss_pred ccCChHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHH
Q 004244 666 KVGNVQKAYDLYKKMVRSGF-VPH-TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAV 743 (766)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 743 (766)
..|++++|++.|+++++.+. .|+ ...+..++..+...|++++|+..++++++.. |.+...+..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999996431 243 3778899999999999999999999999998 56688899999999999999999
Q ss_pred HHHHHHHHHCC
Q 004244 744 LNVLTEMAKDG 754 (766)
Q Consensus 744 ~~~~~~m~~~~ 754 (766)
.+.+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999987754
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=6.5e-05 Score=64.07 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=81.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCh---HHHHHH
Q 004244 657 YDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT----VTIIVLVKALHTAGMNEELSQVIENILRSCRLSD---AELAKV 729 (766)
Q Consensus 657 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 729 (766)
+..++..+...|++++|++.++++++.. |+. ..+..++.++...|++++|+..++++++.. |.+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 4456778889999999999999998653 333 477889999999999999999999999987 344 777889
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 730 LVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 730 l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
++.++...|++++|.+.++++.+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999988765
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.04 E-value=1.2e-05 Score=82.29 Aligned_cols=128 Identities=10% Similarity=0.057 Sum_probs=76.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEA------------------VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH 688 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 688 (766)
..+.+.|++++|+..|++.++. .|+.. .|..+..+|.+.|++++|+..++++++.. +.+
T Consensus 187 ~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 263 (338)
T 2if4_A 187 NSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKN 263 (338)
T ss_dssp HHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 7788999999999999998873 35433 78889999999999999999999998653 335
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHH-HhcCCChhHHHHHHHHHHHCCCCCC
Q 004244 689 TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEI-NHKEGNMDAVLNVLTEMAKDGLLPN 758 (766)
Q Consensus 689 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~~~ 758 (766)
...|..++.++...|++++|+..++++++.. |.+..++..+..+ ....+..+++.+++++|........
T Consensus 264 ~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 264 PKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 6788999999999999999999999999887 5566777777766 4456778888899999887665443
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=2.7e-05 Score=69.85 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=77.7
Q ss_pred HHhccCChHHHHHHHHHHHHc-------CC---------CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHH
Q 004244 663 GHSKVGNVQKAYDLYKKMVRS-------GF---------VPH-TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAE 725 (766)
Q Consensus 663 ~~~~~g~~~~A~~~~~~m~~~-------~~---------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 725 (766)
.+.+.|++++|+..|.+.++. .- .|. ...|..++.++.+.|++++|+..++++++.+ |.+..
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 98 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEK 98 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchH
Confidence 356889999999999998854 00 122 3678889999999999999999999999998 67788
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 726 LAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
.|..++.+|...|++++|...+++..+...
T Consensus 99 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 99 ALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999877643
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=3.7e-05 Score=65.58 Aligned_cols=101 Identities=12% Similarity=0.059 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--h----HHHH
Q 004244 654 EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLS--D----AELA 727 (766)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 727 (766)
...|..++..+...|++++|+..++++++.. +.+...+..++..+...|++++|..+++++++..+.. + ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567888999999999999999999998653 3456788889999999999999999999999885321 1 7788
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 728 KVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 728 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
..++.++...|++++|.+.+++..+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999888653
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00025 Score=75.22 Aligned_cols=55 Identities=13% Similarity=-0.002 Sum_probs=24.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQR--NH--MP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~--~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
..|...|++++|..+++++... +. .+ ...+|..++..|...|++++|..++++..
T Consensus 143 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 143 TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4444555555555555444321 01 11 12344445555555555555555555443
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=4.8e-05 Score=67.68 Aligned_cols=133 Identities=13% Similarity=0.039 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcH----HhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHH
Q 004244 571 TYSVLINGLNKQARTMEAKKLLLKLFYDES-VPSD----VIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELM 645 (766)
Q Consensus 571 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~p~~----~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (766)
++..+...+...|++++|.+.+++.+.... .++. ..+..+. ..+...|++++|...+++.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~---------------~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLG---------------NAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHH
Confidence 455556666667777777777666654210 0111 1222222 6788888999998888887
Q ss_pred HhC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 646 LQR----NHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRS----GFVPH-TVTIIVLVKALHTAGMNEELSQVIENI 715 (766)
Q Consensus 646 ~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (766)
.+. +..+ ...++..++..+...|++++|.+.+++.++. +..+. ..++..++..+...|++++|...++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 642 1111 1456788889999999999999999998742 21111 256778889999999999999999998
Q ss_pred HHc
Q 004244 716 LRS 718 (766)
Q Consensus 716 ~~~ 718 (766)
++.
T Consensus 156 ~~~ 158 (164)
T 3ro3_A 156 LEI 158 (164)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 186
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.00 E-value=8.8e-05 Score=64.30 Aligned_cols=118 Identities=12% Similarity=-0.033 Sum_probs=98.5
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 004244 628 GFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHT----AG 703 (766)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g 703 (766)
+..-.+++++|++.|++..+.| .|+.. +...|...+.+++|++.|++..+.| +...+..+...|.. .+
T Consensus 4 G~g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CcCCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCc
Confidence 3344568899999999999987 33433 7788888888999999999998765 56777888888887 89
Q ss_pred ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhc----CCChhHHHHHHHHHHHCCCC
Q 004244 704 MNEELSQVIENILRSCRLSDAELAKVLVEINHK----EGNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 756 (766)
+.++|..+++++.+.+ ++..+..|+..|.. .++.++|.+++++..+.|..
T Consensus 76 d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 76 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 9999999999999875 46677889999998 89999999999999988753
No 187
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.98 E-value=0.00011 Score=68.39 Aligned_cols=129 Identities=11% Similarity=-0.001 Sum_probs=77.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004244 466 SYSTIISGFSRSQELDKAFDTKREMVEKGVL-P--------------DTITYSSLIHGLCEQRRITEACELFQEMLSRGM 530 (766)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 530 (766)
.+..+...+.+.|++++|+..|++....... | ....+..+..++...|++++|+..+++.++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444445555555555555555555543211 0 02566677777778888888888888777764
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 004244 531 SPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAK-KLLLKLF 596 (766)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~l~~~~~ 596 (766)
+.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++...++.+++. ..+..+.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777778888888888888888777652 345566666666666666666555 4444443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=4.3e-05 Score=78.93 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=99.5
Q ss_pred hhhhhcCCHHHHHHHHHHHHhC--------------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-HH
Q 004244 627 KGFCMKGLMNEADRVFELMLQR--------------NHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-TV 690 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~--------------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 690 (766)
..+.+.|++++|++.|+++++. ...| +..+|..+..+|.+.|++++|++.++++++. .|+ ..
T Consensus 231 ~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 308 (370)
T 1ihg_A 231 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTK 308 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHH
Confidence 7888999999999999998861 0223 5678899999999999999999999999954 454 57
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHH
Q 004244 691 TIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNV 746 (766)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 746 (766)
.+..++.++...|++++|+..++++++.. |.+..++..+..++...|+.+++.+.
T Consensus 309 a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 309 ALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999998 56778888899999888888877654
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.95 E-value=3.5e-05 Score=82.17 Aligned_cols=128 Identities=12% Similarity=0.005 Sum_probs=100.6
Q ss_pred hhhhhcCCHHHHHHHHHHHHh---CCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHH-----cC-CCCCH-HHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQ---RNHMP----NEAVYDIIIHGHSKVGNVQKAYDLYKKMVR-----SG-FVPHT-VTI 692 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~---~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~~-~~~ 692 (766)
..+..+|++++|+.++++.++ .-+-| ...+++.|+.+|...|++++|..+++++++ .| -.|+. .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 446678999999999998874 21222 246789999999999999999999999763 22 12333 678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc-----CCC--ChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 693 IVLVKALHTAGMNEELSQVIENILRS-----CRL--SDAELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
+.|+..|...|++++|..+++++++. |+. ........+..++.+.|.+++|..+++++.+.-
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998864 422 235566788899999999999999999987643
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=7.7e-06 Score=67.82 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCh------HHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSD------AEL 726 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 726 (766)
+...|..++..+...|++++|++.++++++.. +.+...+..++.++...|++++|+..++++++.. |.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 45677888899999999999999999988653 3456788889999999999999999999999987 344 666
Q ss_pred HHHHHHHHhcCCChhHHHHHHHH
Q 004244 727 AKVLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~ 749 (766)
+..++.++...|+.++|.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 77888888888888877665544
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.90 E-value=4.1e-05 Score=66.83 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=78.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhccCChHHHHHHHHHHHHc-----CCCCC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPN-------------EAVYDIIIHGHSKVGNVQKAYDLYKKMVRS-----GFVPH 688 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p~ 688 (766)
..+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..+++.++. .+.|+
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 6788899999999999999974 343 238999999999999999999999999863 12576
Q ss_pred H-HHH----HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 689 T-VTI----IVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 689 ~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
. ..| ...+.++...|++++|+..|+++++..
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 5 678 889999999999999999999999885
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.90 E-value=0.00033 Score=76.60 Aligned_cols=174 Identities=7% Similarity=-0.066 Sum_probs=131.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhh
Q 004244 549 DIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQAR----------TMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIE 618 (766)
Q Consensus 549 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~ 618 (766)
..++|++.+++++... +-+...|+.--..+...|+ ++++++.++++++. .+.+...|..-.
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-~pK~y~aW~hR~------- 114 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRC------- 114 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHH-------
Confidence 3456788888888752 3345566655555555666 89999999999885 233455666555
Q ss_pred hhhHHHHHhhhhhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004244 619 FQNVAALLKGFCMKG--LMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVG-NVQKAYDLYKKMVRSGFVPHTVTIIVL 695 (766)
Q Consensus 619 ~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l 695 (766)
..+.+.| +++++++.++++.+... -+..+|+.-..++.+.| .++++++.++++++.. +-|...|...
T Consensus 115 --------w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r 184 (567)
T 1dce_A 115 --------WLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 184 (567)
T ss_dssp --------HHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHH
T ss_pred --------HHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHH
Confidence 5667778 77999999999998532 28889998888888889 8999999999998543 3345778777
Q ss_pred HHHHHhc--------------CChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhH
Q 004244 696 VKALHTA--------------GMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDA 742 (766)
Q Consensus 696 ~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 742 (766)
...+.+. +.+++|++++++++..+ |.+..+|..+...+.+.|+.++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 7666653 56799999999999998 6778889999999998887554
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.86 E-value=7.2e-05 Score=80.31 Aligned_cols=118 Identities=13% Similarity=-0.008 Sum_probs=89.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-C
Q 004244 576 INGLNKQARTMEAKKLLLKLFYDESVPS-DVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMP-N 653 (766)
Q Consensus 576 i~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~ 653 (766)
...+.+.|++++|.+.+++.++. .|+ ...+..+. ..|.+.|++++|++.++++.+. .| +
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg---------------~~~~~~g~~~~A~~~~~~al~l--~p~~ 73 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRS---------------LAYLRTECYGYALGDATRAIEL--DKKY 73 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHS--CTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHH---------------HHHHHhcCHHHHHHHHHHHHHh--CCCC
Confidence 34456789999999999998874 444 45555555 7899999999999999999985 35 7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 004244 654 EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKA--LHTAGMNEELSQVIE 713 (766)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 713 (766)
..+|..++.+|.+.|++++|++.++++++.. +.+...+..+..+ +.+.|++++|+..++
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8889999999999999999999999998653 2233455555555 888899999999998
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=0.00021 Score=56.32 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVE 732 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 732 (766)
+...+..+...+...|++++|++.+++.++.. +.+...+..++..+...|++++|...++++++.+ |.+...+..++.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45677888889999999999999999998653 3355778889999999999999999999999987 566777778888
Q ss_pred HHhcCC
Q 004244 733 INHKEG 738 (766)
Q Consensus 733 ~~~~~g 738 (766)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776544
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.73 E-value=7.3e-05 Score=76.31 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=49.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHH-HHhcC
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-VTIIVLVKA-LHTAG 703 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~-~~~~g 703 (766)
.+|.+.|++++|+..++++++. .| +...|..++.+|...|++++|++.|+++++ +.|+. ..+..+... ....+
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHH
Confidence 7889999999999999999984 35 788999999999999999999999999874 35554 445555544 33456
Q ss_pred ChHHHHHHHHHHHHcCC
Q 004244 704 MNEELSQVIENILRSCR 720 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~~~ 720 (766)
..+++...+++++...+
T Consensus 314 ~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 314 LYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHhhCCCC
Confidence 77888999999988763
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.68 E-value=0.00018 Score=59.97 Aligned_cols=82 Identities=16% Similarity=0.062 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004244 636 NEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENI 715 (766)
Q Consensus 636 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (766)
++|+..|+++.+.. +.+...+..++..|...|++++|++.++++++.. +.+...|..++.++...|++++|...++++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35788888888753 2278889999999999999999999999998653 334578888999999999999999999999
Q ss_pred HHcC
Q 004244 716 LRSC 719 (766)
Q Consensus 716 ~~~~ 719 (766)
++..
T Consensus 80 l~~~ 83 (115)
T 2kat_A 80 LAAA 83 (115)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.64 E-value=0.00053 Score=73.17 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004244 499 TITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLING 578 (766)
Q Consensus 499 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 578 (766)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++.++.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4566667777777777777777777777664 4456677777777777777877777777777652 2344566666666
Q ss_pred HHhcCCHHHHHH-HHHHHH
Q 004244 579 LNKQARTMEAKK-LLLKLF 596 (766)
Q Consensus 579 ~~~~g~~~~A~~-l~~~~~ 596 (766)
+.+.|+.++|.+ ++.+|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 767777666653 344443
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.60 E-value=0.00054 Score=70.68 Aligned_cols=140 Identities=10% Similarity=-0.061 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004244 429 IVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHG 508 (766)
Q Consensus 429 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 508 (766)
...+..+...+.+.|++++|+..|++..+.- +.. ......+++. ... ..+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HHH-HHHHHHHHHHHHH
Confidence 4456667777777788888877777766520 000 0000011110 010 1134566777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004244 509 LCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEA 588 (766)
Q Consensus 509 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A 588 (766)
|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|++.+++..+.. +.+...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888777764 4456677777777888888888888888777652 33555666666666666666555
Q ss_pred HH
Q 004244 589 KK 590 (766)
Q Consensus 589 ~~ 590 (766)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.60 E-value=0.00018 Score=59.90 Aligned_cols=81 Identities=11% Similarity=-0.003 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 004244 671 QKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEM 750 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 750 (766)
++|++.++++++.. +.+...+..++..+...|++++|+..++++++.+ |.+...|..++.+|...|++++|...+++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35777888887532 2345778888888999999999999999999887 566778888999999999999999998887
Q ss_pred HHC
Q 004244 751 AKD 753 (766)
Q Consensus 751 ~~~ 753 (766)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.49 E-value=0.00057 Score=72.79 Aligned_cols=123 Identities=12% Similarity=0.061 Sum_probs=65.1
Q ss_pred HHhcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCcH-HhHHH
Q 004244 544 YCTEGDIPQALRLHDEMIQK---GFLP----DVVTYSVLINGLNKQARTMEAKKLLLKLFYD-----E-SVPSD-VIYNT 609 (766)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~~~---g~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~-~~p~~-~~~~~ 609 (766)
+..+|++++|+.++++.++. -+.| -..+++.|...|...|++++|..++++.+.- | ..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655532 1111 2346677777777778888777777766531 1 11111 11222
Q ss_pred HhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 610 LIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQ-----RNHM-P-NEAVYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 610 ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
+. ..|...|++++|+.++++..+ .|.. | ...+.+.+..++.+.|.+++|..++.++.
T Consensus 399 La---------------~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AG---------------LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---------------HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 566666777776666666542 2321 1 12233445555555566666666665554
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.48 E-value=0.0043 Score=53.44 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=6.0
Q ss_pred CChHHHHHHHHHHHH
Q 004244 548 GDIPQALRLHDEMIQ 562 (766)
Q Consensus 548 g~~~~A~~~~~~~~~ 562 (766)
++.++|.+.+++..+
T Consensus 111 ~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 111 KNEKQAVKTFEKACR 125 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 334444444443333
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=0.00014 Score=63.33 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=69.1
Q ss_pred hhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCh----------HHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 004244 629 FCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNV----------QKAYDLYKKMVRSGFVPH-TVTIIVLV 696 (766)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~m~~~~~~p~-~~~~~~l~ 696 (766)
..+.+.+++|++.+++.++. .| +...|..+..++.+.+++ ++|+..|+++++. .|+ ...|..++
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG 87 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 45677889999999999874 35 788888888888888765 4888888888854 454 46788888
Q ss_pred HHHHhcC-----------ChHHHHHHHHHHHHcCC
Q 004244 697 KALHTAG-----------MNEELSQVIENILRSCR 720 (766)
Q Consensus 697 ~~~~~~g-----------~~~~A~~~~~~~~~~~~ 720 (766)
.+|...| ++++|+.+|+++++.+|
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 8888764 78888888888888873
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.46 E-value=0.0059 Score=66.68 Aligned_cols=173 Identities=9% Similarity=-0.016 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-
Q 004244 410 LDEAYRLLNEMTKNGFMPSIVTYNALIKGHCTGGR----------VEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQ- 478 (766)
Q Consensus 410 ~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 478 (766)
.++|++.++++.... +.+..+|+.--..+...|+ ++++...++.+.+...+ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 456677777776653 2234445544444444455 78888888888877655 7778887777777888
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 004244 479 -ELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQR-RITEACELFQEMLSRGMSPDEFTYTTLINAYCTE--------- 547 (766)
Q Consensus 479 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------- 547 (766)
+++++++.++++.+.... |..+|+.-...+.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 678888888888887655 7788888777777888 8888888888888775 55777777776666653
Q ss_pred -----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004244 548 -----GDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTME 587 (766)
Q Consensus 548 -----g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 587 (766)
+.++++++.+++.+... +-|...|..+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788999998888752 5567788877777777776444
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.43 E-value=0.00028 Score=61.39 Aligned_cols=89 Identities=9% Similarity=-0.028 Sum_probs=74.7
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004244 665 SKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN----------EELSQVIENILRSCRLSDAELAKVLVEIN 734 (766)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 734 (766)
.+.+.+++|++.+++.++.. +.+...|..+..++...|++ ++|+..|+++++.+ |....+|+.++.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 45677899999999999653 34568888888888888765 59999999999998 67788899999999
Q ss_pred hcCC-----------ChhHHHHHHHHHHHCCC
Q 004244 735 HKEG-----------NMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 735 ~~~g-----------~~~~A~~~~~~m~~~~~ 755 (766)
...| ++++|++.|++..+.+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 9875 89999999999888654
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.42 E-value=0.00055 Score=55.25 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
+...+..++.+|.+.|++++|++.|+++++.. +.+...|..++.++...|++++|+..++++++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 67888999999999999999999999998653 2345788899999999999999999999998764
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00019 Score=59.03 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=66.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHH
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-------TVTIIVLVKAL 699 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~~~l~~~~ 699 (766)
..+...|++++|++.|++.++.. +.+...|..++.++.+.|++++|++.++++++. .|+ ...+..+..++
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 88 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQYRLELAQ 88 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHHHHHHHH
Confidence 78889999999999999999853 227888999999999999999999999999953 555 44556666777
Q ss_pred HhcCChHHHHHHHH
Q 004244 700 HTAGMNEELSQVIE 713 (766)
Q Consensus 700 ~~~g~~~~A~~~~~ 713 (766)
...|+.++|+..++
T Consensus 89 ~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 89 GAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHCCCCCSSSSS
T ss_pred HHHHhHhhhHhHHH
Confidence 77777666655443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.25 E-value=0.001 Score=53.63 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=28.3
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 004244 625 LLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMV 681 (766)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 681 (766)
+...|...|++++|+..|+++++.. | +...|..++.+|...|++++|++.+++.+
T Consensus 13 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 13 LAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555432 2 34445555555555555555555555544
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.20 E-value=0.0012 Score=69.13 Aligned_cols=89 Identities=7% Similarity=-0.054 Sum_probs=63.8
Q ss_pred hhcCCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHH-----cC-CCCCH-HHHHHH
Q 004244 630 CMKGLMNEADRVFELMLQ---RNHMPN----EAVYDIIIHGHSKVGNVQKAYDLYKKMVR-----SG-FVPHT-VTIIVL 695 (766)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~~-~~~~~l 695 (766)
...|++++|+.++++.++ .-+-|+ ..+++.++.+|...|++++|+.+++++++ .| -.|+. .+++.|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 356788888888887764 212232 45678888888888888888888888762 22 12333 567788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 004244 696 VKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
+..|...|++++|..+++++++.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 88888888888888888888876
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.18 E-value=0.0025 Score=50.29 Aligned_cols=65 Identities=8% Similarity=-0.022 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 653 NEAVYDIIIHGHSKVGN---VQKAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
++..+..++.++...++ .++|..+++++++. .|+ ......++..+...|++++|+.+++++++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44444444444432222 35555555555532 222 2344444455555555555555555555544
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.04 E-value=0.00099 Score=53.42 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004244 660 IIHGHSKVGNVQKAYDLYKKMVRSGFVPHTV-TIIVLVKALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
.+..+.+.|++++|++.++++++.. +.+.. .+..++.++...|++++|+..++++++.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445556666666666666666432 22234 56666666666677777777777766665
No 211
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.03 E-value=0.0053 Score=47.85 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=23.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004244 468 STIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLS 527 (766)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 527 (766)
..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333344444444444444444333211 233333344444444444444444444433
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.00 E-value=0.0039 Score=65.31 Aligned_cols=95 Identities=9% Similarity=0.028 Sum_probs=58.0
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHH-----cC-CCCCH-
Q 004244 624 ALLKGFCMKGLMNEADRVFELMLQR---NHMPN----EAVYDIIIHGHSKVGNVQKAYDLYKKMVR-----SG-FVPHT- 689 (766)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~~- 689 (766)
..+..+...|++++|+.++++.++. -+.|+ ..+++.++.+|...|+|++|+.+++++++ .| ..|+.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3345556667777777777766642 11221 34566677777777777777777776652 12 11222
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 690 VTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
.+++.|+..|...|++++|..+++++++.
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 55666777777777777777777777766
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.85 E-value=0.01 Score=62.04 Aligned_cols=92 Identities=9% Similarity=0.006 Sum_probs=73.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC--CChHHH
Q 004244 661 IHGHSKVGNVQKAYDLYKKMVRS---GFVPHT----VTIIVLVKALHTAGMNEELSQVIENILRS-----CR--LSDAEL 726 (766)
Q Consensus 661 ~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~ 726 (766)
+..+.+.|++++|+++++++++. -+.|+. .+++.++.+|...|++++|..+++++++. ++ |.....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466789999999999999843 122332 67888999999999999999999998854 31 223567
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 727 AKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 727 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
++.|+..|..+|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999999999988654
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.82 E-value=0.012 Score=58.83 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 004244 652 PNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 652 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (766)
.++.+|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|+.++|...+++++..+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 478889888888888899999999999999764 7877888889999999999999999999999984
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.81 E-value=0.0033 Score=65.75 Aligned_cols=85 Identities=12% Similarity=-0.046 Sum_probs=68.8
Q ss_pred CChHHHHHHHHHHHH---cCCCCC---H-HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC--CChHHHHHHHHHH
Q 004244 668 GNVQKAYDLYKKMVR---SGFVPH---T-VTIIVLVKALHTAGMNEELSQVIENILRS-----CR--LSDAELAKVLVEI 733 (766)
Q Consensus 668 g~~~~A~~~~~~m~~---~~~~p~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~~~l~~~ 733 (766)
|++++|+.++++.++ .-+.|+ . .+++.++.+|...|++++|..+++++++. |+ |.....++.|+..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 689999999998764 222333 3 67889999999999999999999998854 32 2246678999999
Q ss_pred HhcCCChhHHHHHHHHHHH
Q 004244 734 NHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 734 ~~~~g~~~~A~~~~~~m~~ 752 (766)
|..+|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.66 E-value=0.14 Score=49.04 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhcc-----CChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhc-
Q 004244 634 LMNEADRVFELMLQRNHMPN---EAVYDIIIHGHSKV-----GNVQKAYDLYKKMVRSGFVPH--TVTIIVLVKALHTA- 702 (766)
Q Consensus 634 ~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~- 702 (766)
....|..++++.++ +.|+ -..|..++..|.+. |+.++|.++|+++++. .|+ ..++..++..++..
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhc
Confidence 45778888888888 4575 56788899889884 9999999999999865 453 56677788888874
Q ss_pred CChHHHHHHHHHHHHcCCC
Q 004244 703 GMNEELSQVIENILRSCRL 721 (766)
Q Consensus 703 g~~~~A~~~~~~~~~~~~~ 721 (766)
|+.++|..++++++...+.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 9999999999999998654
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.60 E-value=0.0094 Score=51.18 Aligned_cols=89 Identities=8% Similarity=0.029 Sum_probs=73.3
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCC
Q 004244 630 CMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVG---NVQKAYDLYKKMVRSGFVP--HTVTIIVLVKALHTAGM 704 (766)
Q Consensus 630 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~ 704 (766)
...+....+.+.|.+..+.|. ++..+...+..++++++ +.++++.++++..+.. .| +...+..++-++.+.|+
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccC
Confidence 344567788888888877654 68888889999999988 5679999999998764 35 34677778889999999
Q ss_pred hHHHHHHHHHHHHcCC
Q 004244 705 NEELSQVIENILRSCR 720 (766)
Q Consensus 705 ~~~A~~~~~~~~~~~~ 720 (766)
+++|.++++++++..|
T Consensus 87 Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999999984
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.55 E-value=0.027 Score=48.31 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcC-CCChHHHHHHHHHHHhcCCChhHHH
Q 004244 669 NVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAG---MNEELSQVIENILRSC-RLSDAELAKVLVEINHKEGNMDAVL 744 (766)
Q Consensus 669 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 744 (766)
....+.+.|.+..+.+ .++..+...+++++.+++ +.++++.+++.+++.+ +......+..|+-++.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3456677777776655 477888888899999888 6668999999998886 2245677778888899999999999
Q ss_pred HHHHHHHHCCC
Q 004244 745 NVLTEMAKDGL 755 (766)
Q Consensus 745 ~~~~~m~~~~~ 755 (766)
++++++.+..+
T Consensus 92 ~y~~~lL~ieP 102 (152)
T 1pc2_A 92 KYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCC
Confidence 99888877643
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.51 E-value=0.075 Score=53.23 Aligned_cols=120 Identities=10% Similarity=-0.044 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhc---cC-ChHHH----HHHHHHHHHc-CCCCCHHHHHHHHHHHHhcC
Q 004244 634 LMNEADRVFELMLQRNHMPN-EAVYDIIIHGHSK---VG-NVQKA----YDLYKKMVRS-GFVPHTVTIIVLVKALHTAG 703 (766)
Q Consensus 634 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~~~~A----~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g 703 (766)
...+|+.+|+++++. .|+ ...|..+..+|.. .+ ..... ...++..... ..+.+..++..+...+...|
T Consensus 214 ~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 214 SLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence 357788888888873 463 4455444444431 11 11111 1112221111 12445677777777777789
Q ss_pred ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC
Q 004244 704 MNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLP 757 (766)
Q Consensus 704 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 757 (766)
++++|+..+++++..+ ++...|..++..+.-.|++++|.+.+++....+..+
T Consensus 292 d~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 292 KTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999997 456777889999999999999999999988776543
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.34 E-value=0.01 Score=47.24 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCChHH-HHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 694 VLVKALHTAGMNEELSQVIENILRSCRLSDAE-LAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
..+..+...|++++|+..++++++.. |.+.. .+..++.+|...|++++|.+.+++..+.+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 35667889999999999999999998 56677 899999999999999999999999887754
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.31 E-value=0.16 Score=58.37 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=24.5
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 475 SRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEM 525 (766)
Q Consensus 475 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 525 (766)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4455555555553322 24455666666666666666666665554
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.30 E-value=0.13 Score=59.05 Aligned_cols=192 Identities=11% Similarity=0.020 Sum_probs=108.7
Q ss_pred HHHccCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004244 473 GFSRSQELDKAFD-TKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIP 551 (766)
Q Consensus 473 ~~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (766)
.....+++++|.+ ++..+ ++......++..+.+.|..++|.++.+.- . .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCHH
Confidence 3445778888766 44211 11223366777778888888887665321 1 1123345678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhh
Q 004244 552 QALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCM 631 (766)
Q Consensus 552 ~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~ 631 (766)
+|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+. ..|..
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~---------------~l~~~ 719 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLF---------------LLHSS 719 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHH---------------HHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhH---------------HHHHH
Confidence 888875432 4678888888888888888888888877632 12222 34444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 004244 632 KGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQV 711 (766)
Q Consensus 632 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 711 (766)
.|+.+...++.+.....| + ++....++.+.|++++|++++. +.+++++|..+
T Consensus 720 ~~~~~~~~~~~~~a~~~~---~---~~~A~~~~~~~g~~~~a~~~~~----------------------~~~~~~~A~~l 771 (814)
T 3mkq_A 720 FNNKEGLVTLAKDAETTG---K---FNLAFNAYWIAGDIQGAKDLLI----------------------KSQRFSEAAFL 771 (814)
T ss_dssp TTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHH----------------------HTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC---c---hHHHHHHHHHcCCHHHHHHHHH----------------------HcCChHHHHHH
Confidence 666665555544444432 1 2233334445555555555544 44566666665
Q ss_pred HHHHHHcCCCC--hHHHHHHHHHHHhcCCChhHH
Q 004244 712 IENILRSCRLS--DAELAKVLVEINHKEGNMDAV 743 (766)
Q Consensus 712 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 743 (766)
.++ .++.. -..+.......+...|+.+.|
T Consensus 772 A~~---~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 772 GST---YGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHH---TTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHH---hCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 443 33222 224444555666667765433
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.15 E-value=0.048 Score=43.91 Aligned_cols=74 Identities=7% Similarity=-0.077 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSG------FVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAEL 726 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 726 (766)
+..-+..++..+.+.|+++.|...++++++.- -.+....+..++.++.+.|++++|..+++++++..| .+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P-~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHH
Confidence 44556678888889999999999988877431 123446778888999999999999999999998874 44444
Q ss_pred H
Q 004244 727 A 727 (766)
Q Consensus 727 ~ 727 (766)
.
T Consensus 83 ~ 83 (104)
T 2v5f_A 83 N 83 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.10 E-value=0.044 Score=46.26 Aligned_cols=103 Identities=13% Similarity=0.168 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHhccCCh------HHHHHHHHHHHHcCCCCCH-HHHHHHH------HHHHhcCChHHHHHHHHHHHHcC
Q 004244 653 NEAVYDIIIHGHSKVGNV------QKAYDLYKKMVRSGFVPHT-VTIIVLV------KALHTAGMNEELSQVIENILRSC 719 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~m~~~~~~p~~-~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~ 719 (766)
|..+|-..+....+.|+. ++.++.|+++... ++|+. ..|...+ ..+...++.++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 677777777777777877 7778888887753 45543 1111111 11234478888888888887763
Q ss_pred CCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC
Q 004244 720 RLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLLP 757 (766)
Q Consensus 720 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 757 (766)
..-+.+|...+..-.++|+...|.+++.+....+.+|
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3337778777888888888888888888888877665
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.08 E-value=0.027 Score=53.98 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcC-CCh
Q 004244 670 VQKAYDLYKKMVRSGFVPH---TVTIIVLVKALHTA-----GMNEELSQVIENILRSCRLSDAELAKVLVEINHKE-GNM 740 (766)
Q Consensus 670 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 740 (766)
..+|...++++++. .|+ ...|..++..|... |+.++|.+.|+++++.++..+..++...++.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46788888888854 566 46788888888884 99999999999999998555588888899999985 999
Q ss_pred hHHHHHHHHHHHCCCCCCCCC
Q 004244 741 DAVLNVLTEMAKDGLLPNSGR 761 (766)
Q Consensus 741 ~~A~~~~~~m~~~~~~~~~~~ 761 (766)
++|.+.+++..+.....+|++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHHHcCCCCCCCCh
Confidence 999999999999888854543
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.96 E-value=0.048 Score=42.80 Aligned_cols=70 Identities=7% Similarity=0.029 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 004244 686 VPHTVTIIVLVKALHTAGM---NEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGLL 756 (766)
Q Consensus 686 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 756 (766)
+.|...+..++.++...++ .++|...++++++.+ |.+......++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456777777877765544 688999999999888 677888888888888899999999999988887765
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.84 E-value=0.054 Score=43.61 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 688 HTVTIIVLVKALHTAGMNEELSQVIENILRSC------RLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
+..-+..++..+...|+++.|+.+++++++.. ......++..|+.++.+.|++++|...++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44556788999999999999999999999862 13467889999999999999999999999987654
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.70 E-value=3.8 Score=46.40 Aligned_cols=280 Identities=13% Similarity=0.053 Sum_probs=154.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 004244 438 GHCTGGRVEDAVGVLHGMARKG--LAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGV-------LPDTITYSSLIHG 508 (766)
Q Consensus 438 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~li~~ 508 (766)
+....|+.++++.++......+ -.+....-..+.-+....|..+++...+.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4567788888888776655421 122234444455566677766678887777655321 0112222333334
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcC
Q 004244 509 LCEQRR-ITEACELFQEMLSRGMSPDEF--TYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLING--LNKQA 583 (766)
Q Consensus 509 ~~~~g~-~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~--~~~~g 583 (766)
+...|. -+++.+.+..++... .+... .--+|...++-.|+-+....++..+.+.. +......++-+ +...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 443443 246666666666543 11111 11233344557788887888888777642 33333444444 44678
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004244 584 RTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHG 663 (766)
Q Consensus 584 ~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 663 (766)
+.+.+..+++.+... .....-|...+ ++.-+|+..|+.....+++..+.+.. ..+..-...+.-+
T Consensus 539 ~~e~~~~li~~L~~~--~dp~vRygaa~------------alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLG 603 (963)
T 4ady_A 539 RQELADDLITKMLAS--DESLLRYGGAF------------TIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALG 603 (963)
T ss_dssp CGGGGHHHHHHHHHC--SCHHHHHHHHH------------HHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhC--CCHHHHHHHHH------------HHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHH
Confidence 888888888887653 22222333222 22267889999888888998888641 2233333333334
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCC
Q 004244 664 HSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN-EELSQVIENILRSCRLSDAELAKVLVEINHKEG 738 (766)
Q Consensus 664 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 738 (766)
+...|+.+.+..+++.+.+.+ .|....-..++-+....|+. .+|+..+.++.... .+.+......+-+..-.|
T Consensus 604 lI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 604 FVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP-VDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTT
T ss_pred hhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC-CHHHHHHHHHHHHHHhcC
Confidence 445677666677776665443 45444444555555556654 67888888887532 333333333344444444
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.10 E-value=0.15 Score=42.09 Aligned_cols=88 Identities=7% Similarity=-0.013 Sum_probs=67.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChH
Q 004244 632 KGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQK---AYDLYKKMVRSGFVP--HTVTIIVLVKALHTAGMNE 706 (766)
Q Consensus 632 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~ 706 (766)
......+.+.|.+....|. |+..+-..+.+++.++.+..+ ++.++++..+.+ .| .......++-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3445566666766665443 678888888999999988765 999999988653 24 2356667888999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 004244 707 ELSQVIENILRSCRL 721 (766)
Q Consensus 707 ~A~~~~~~~~~~~~~ 721 (766)
+|..+++.+++..|.
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999843
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.66 E-value=0.087 Score=45.53 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=54.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcC-CCCC-----H--HHHHHHHHHHHhcCChHHHHHHHHHHHHc------------
Q 004244 659 IIIHGHSKVGNVQKAYDLYKKMVRSG-FVPH-----T--VTIIVLVKALHTAGMNEELSQVIENILRS------------ 718 (766)
Q Consensus 659 ~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~-----~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------ 718 (766)
.-+..+...|.++.|+-+.+.++... ..|+ . .++..++++++..|++.+|...|+++++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33444555555555555555433110 1111 1 23444555555555555555555554322
Q ss_pred ------------CCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 719 ------------CRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 719 ------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
....+.++-..++.+|.+.|++++|+.+++.+..+.
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 112345666779999999999999999988765443
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.95 Score=39.84 Aligned_cols=97 Identities=12% Similarity=0.228 Sum_probs=44.8
Q ss_pred HcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004244 266 KLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALV 345 (766)
Q Consensus 266 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 345 (766)
..|+++.|.++.+++ -+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 445555555555444 1344555555555555555555555555432 2333333444455444444
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004244 346 LHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFD 383 (766)
Q Consensus 346 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 383 (766)
+-+.....| -++.-...+.-.|+++++.++|.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 333333322 12333333444455555555553
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.31 E-value=1.9 Score=35.59 Aligned_cols=63 Identities=22% Similarity=0.138 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004244 502 YSSLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGF 565 (766)
Q Consensus 502 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 565 (766)
....++.+...|+-++-.+++..+... .+|++.....+.++|.+.|+..+|.+++.+..++|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444455555555555555554332 244555555555555555555555555555555543
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.18 E-value=0.19 Score=41.40 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=67.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhHH
Q 004244 668 GNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEE---LSQVIENILRSCRL-SDAELAKVLVEINHKEGNMDAV 743 (766)
Q Consensus 668 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 743 (766)
.....+.+.|.+....| .|+..+-..+++++.++.+.++ ++.+++.+.+.+.| ..-.....|+-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 33455666677666555 4788888889999999988766 99999998887622 3456677899999999999999
Q ss_pred HHHHHHHHHCCC
Q 004244 744 LNVLTEMAKDGL 755 (766)
Q Consensus 744 ~~~~~~m~~~~~ 755 (766)
.+.++.+.+..+
T Consensus 94 ~~~~~~lL~~eP 105 (126)
T 1nzn_A 94 LKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 999999887643
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.23 Score=55.17 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=82.5
Q ss_pred hhhhhcCC-HHHHHHHHHHHHhCCCCCCHHH-H-HHHHHHHhccCC-hHHHHHHHHHHHHc------CCCCCHH------
Q 004244 627 KGFCMKGL-MNEADRVFELMLQRNHMPNEAV-Y-DIIIHGHSKVGN-VQKAYDLYKKMVRS------GFVPHTV------ 690 (766)
Q Consensus 627 ~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~-~-~~l~~~~~~~g~-~~~A~~~~~~m~~~------~~~p~~~------ 690 (766)
..+...|+ .+.|+.+++++.+.. |...+ + ..++..+.+.++ --+|+.++.+.++. ...+...
T Consensus 256 ~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 256 SFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 45555666 588999999998753 53333 2 233333333332 23566666665421 1122110
Q ss_pred -----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004244 691 -----TIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMA 751 (766)
Q Consensus 691 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 751 (766)
....=++-|...|+++-|..+.++++... |.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111445667899999999999999997 7889999999999999999999999988874
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.84 E-value=2.4 Score=35.02 Aligned_cols=84 Identities=6% Similarity=0.029 Sum_probs=55.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004244 631 MKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQ 710 (766)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 710 (766)
.+|++......+-.+- .+....+..++.+..+|+-++-.+++..++. +-+|++.....++.+|.+.|+..+|.+
T Consensus 73 ~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 4566666666654432 2444556667777777777777777777543 235667777777777778888877777
Q ss_pred HHHHHHHcCC
Q 004244 711 VIENILRSCR 720 (766)
Q Consensus 711 ~~~~~~~~~~ 720 (766)
++.++-+.|.
T Consensus 147 Ll~~AC~kG~ 156 (172)
T 1wy6_A 147 LLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhhh
Confidence 7777777763
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.41 E-value=2.7 Score=36.95 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=68.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 004244 227 RGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLK 306 (766)
Q Consensus 227 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 306 (766)
....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445678888888887765 2567788888888888888888888877642 334444555667776
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004244 307 ETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAE 349 (766)
Q Consensus 307 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 349 (766)
.-.++-+.....| -++.....+.-.|+++++.+++.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665555554443 144455556667888888877754
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.33 E-value=0.0015 Score=66.57 Aligned_cols=448 Identities=13% Similarity=0.086 Sum_probs=246.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHH
Q 004244 145 SSAVIDLVVKSYSHLNMIDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNV 224 (766)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 224 (766)
.+.+|+.|.++..+.|++.+|++.|=+ .-|+..|..++.+..+.|.. ++-.+.+.-.++. .-+...=+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~---edLv~yL~MaRk~--~ke~~IDte 121 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNW---EELVKYLQMARKK--ARESYVETE 121 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCC---TTHHHHHHTTSTT--CCSTTTTHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCH---HHHHHHHHHHHHH--hcccccHHH
Confidence 567899999999999999998876632 24777788888888888843 5555555444433 233444467
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 004244 225 LIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGR 304 (766)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 304 (766)
|+-+|.+.+++.+-.+++ -.||+.-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|+
T Consensus 122 Li~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~ 185 (624)
T 3lvg_A 122 LIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGE 185 (624)
T ss_dssp HHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSG
T ss_pred HHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHH
Confidence 888888888876533322 236666677788888888888888877765532 3445555667788
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004244 305 LKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQ 384 (766)
Q Consensus 305 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 384 (766)
+.+|.+.-++. -++.||-.+-.+|...+++.-|...--.++-. + .....++..|-..|.+++-+.+++.
T Consensus 186 yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 186 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp GGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77776543322 35668888888999999888776655444432 1 1223466778888999999998888
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004244 385 MHVRELRPNEKTYTTLINGFSQHGFLDEAYRLLNEMTKN-GFMPSI-------VTYNALIKGHCTGGRVEDAVGVLHGMA 456 (766)
Q Consensus 385 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~ 456 (766)
-... -+.....|+-|.-.|++- +.++..+.++..-.+ ++ |.. ..|.-++-.|++-.+++.|... |.
T Consensus 255 glgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi-pKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi 328 (624)
T 3lvg_A 255 ALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI-PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MM 328 (624)
T ss_dssp HTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC-TTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TT
T ss_pred HhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH-HHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HH
Confidence 7643 234667777777777765 344444444433221 11 111 1233444444444444433221 11
Q ss_pred HC-------C-------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004244 457 RK-------G-------LAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRRITEACELF 522 (766)
Q Consensus 457 ~~-------~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 522 (766)
++ + -..+...|-.-|..|....- ..--+++.-+..+ +.+. ..++.+.+.|+..-....+
T Consensus 329 ~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P-~lL~DLL~vL~pr-lDh~-----RvV~~~~k~~~LpLIkpYL 401 (624)
T 3lvg_A 329 NHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP-LLLNDLLMVLSPR-LDHT-----RAVNYFSKVKQLPLVKPYL 401 (624)
T ss_dssp SCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCC-TTSHHHHHHHCTT-CCST-----TTHHHHHTTTCGGGGTGGG
T ss_pred hCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhCh-HHHHHHHHhcccc-CChH-----HHHHHHHhcCCchhhHHHH
Confidence 10 0 01123333333333332211 0001111111000 0000 1122223333333322222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH------------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004244 523 QEMLSRGMSPDEFTYTTLINAYCTEGDIPQALR------------LHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKK 590 (766)
Q Consensus 523 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~------------~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 590 (766)
...+. .-+...=.++-+.|....+++.-+. +-+++.++ +-...-......|.++++|++++.
T Consensus 402 ~~Vq~---~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~ 475 (624)
T 3lvg_A 402 RSVQN---HNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVE 475 (624)
T ss_dssp TSCCC---SCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSS
T ss_pred HHHHH---hhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHH
Confidence 22211 1123333455556666666654332 22233322 222333344455677888888776
Q ss_pred HHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 004244 591 LLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNV 670 (766)
Q Consensus 591 l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 670 (766)
+.++= + .|.-.+ ......|+.+-|.++++-..+.| +...|.+.+..|...=++
T Consensus 476 l~KkD---k------lykDAi---------------etAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrp 528 (624)
T 3lvg_A 476 LCKKD---S------LYKDAM---------------QYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRP 528 (624)
T ss_dssp CSSTT---C------CTTGGG---------------TTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSC
T ss_pred HHHhc---c------cHHHHH---------------HHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccCh
Confidence 54321 1 222223 55667788888888888887755 455666777777777777
Q ss_pred HHHHHH
Q 004244 671 QKAYDL 676 (766)
Q Consensus 671 ~~A~~~ 676 (766)
+-++++
T Consensus 529 DvVlEl 534 (624)
T 3lvg_A 529 DVVLET 534 (624)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.28 E-value=2.7 Score=34.74 Aligned_cols=74 Identities=8% Similarity=0.019 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004244 649 NHMPNEAVYDIIIHGHSKVGNV---QKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLS 722 (766)
Q Consensus 649 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 722 (766)
+..|+..+--.+.+++.++.+. .+++.+++++.+.+..-....+-.++-++.+.|++++|.++.+.+++..|.+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 4457888877888888888765 5789999998876521234677788889999999999999999999998443
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.61 E-value=0.0025 Score=64.99 Aligned_cols=118 Identities=15% Similarity=0.165 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 004244 219 VYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIING 298 (766)
Q Consensus 219 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 298 (766)
...|..|..+..+.+++.+|++.| ++. .|...|..+|....+.|.+++-.+.+.-..+.. .+...=+.++-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 446788888888888888876544 222 266678888888888899888888776555442 244455678888
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 299 LCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMV 351 (766)
Q Consensus 299 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 351 (766)
|++.+++.+-.+++ -.||..-...+.+-|...|.++.|.-+|..+.
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is 171 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 171 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 88888876644332 12666667778888888898888888876553
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.55 E-value=8.1 Score=40.22 Aligned_cols=192 Identities=13% Similarity=0.069 Sum_probs=119.6
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 004244 512 QRRITEACELFQEMLSR-----GMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK-GFLPDVVTYSVLINGLNKQART 585 (766)
Q Consensus 512 ~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~~ 585 (766)
.|++++|++.+-.+.+. +..........++..|...|+++...+.+..+.++ |..+ .....++..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~------- 99 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQK------- 99 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHH-------
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHH-------
Confidence 37889998888776642 33445667888999999999999988887766644 3222 222233322
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhh----------hhhHHHHHhhhhhcCCHHHHHHHHHHHHh--CCCCCC
Q 004244 586 MEAKKLLLKLFYDESVPSDVIYNTLIENCTNIE----------FQNVAALLKGFCMKGLMNEADRVFELMLQ--RNHMPN 653 (766)
Q Consensus 586 ~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~ 653 (766)
+...+... ..++..+...++....... ......|...|...|++.+|..++..+.. .|..+.
T Consensus 100 --~~~~l~~~----~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~ 173 (445)
T 4b4t_P 100 --VMEYLKSS----KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM 173 (445)
T ss_dssp --HHHHHHHH----CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH
T ss_pred --HHHHHhcC----CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH
Confidence 22333332 2234444444443322211 11234677888888999999998888763 332221
Q ss_pred ---HHHHHHHHHHHhccCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 654 ---EAVYDIIIHGHSKVGNVQKAYDLYKKMVR----SGFVPHT--VTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 654 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
...+...++.|...+++.+|..+++++.. ....|+. ..+...+..+...+++.+|-..|..+...
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34566777888888999998888888642 2222222 34445666777788888888887777665
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.48 E-value=1.3 Score=37.41 Aligned_cols=31 Identities=10% Similarity=-0.068 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhcCCh------hhHHHHHHHHHh
Q 004244 217 PNVYTYNVLIRGFCGVGDL------EMGLRFFSEMEK 247 (766)
Q Consensus 217 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~ 247 (766)
-|..+|-..+..+-+.|+. ++.+++|++...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 3455555555555555665 555566666554
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.45 E-value=3.9 Score=34.27 Aligned_cols=73 Identities=8% Similarity=0.018 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004244 650 HMPNEAVYDIIIHGHSKVGNV---QKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLS 722 (766)
Q Consensus 650 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 722 (766)
..|+..+-..+.+++.++.+. .+++.+++.+...+..-.....-.++-++.+.|++++|.++.+.+++..|.+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 357888878888999988765 5789999998875422234666678889999999999999999999998433
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.15 E-value=4.9 Score=33.65 Aligned_cols=70 Identities=9% Similarity=-0.036 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 004244 686 VPHTVTIIVLVKALHTAGMN---EELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDGL 755 (766)
Q Consensus 686 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 755 (766)
.|+..+-..+++++.++.+. .+++.+++.+.+.++...-.....|+-++.+.|++++|.++.+.+.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 57778888899999988765 57899999999987556677778899999999999999999998887643
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.40 E-value=3 Score=34.48 Aligned_cols=71 Identities=10% Similarity=-0.012 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 004244 684 GFVPHTVTIIVLVKALHTAGMN---EELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAKDG 754 (766)
Q Consensus 684 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 754 (766)
+-.|+..+-..+++++.++.+. .+++.+++.+.+.++...-..+..|+-++.+.|++++|.++.+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 3467778888899999988765 5789999999988754567778889999999999999999999988764
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.08 E-value=4.4 Score=41.37 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=55.1
Q ss_pred HHHHhhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHH-----HcCCCCCHHHHH
Q 004244 623 AALLKGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMV-----RSGFVPHTVTII 693 (766)
Q Consensus 623 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~ 693 (766)
..++..+...|+.++|+..+..+... .| +...|..++.+|.+.|+..+|++.|+++. +.|+.|...+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34457788899999999998888864 35 78889999999999999999999988864 358888876543
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.80 E-value=8.7 Score=38.97 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=25.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004244 660 IIHGHSKVGNVQKAYDLYKKMVRSGFVPHT-----VTIIVLVKALHTAGMNEELSQVIENIL 716 (766)
Q Consensus 660 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (766)
++..|...|++.+|.+++.++.+.--..|. ..+..-+..+...|+..++...+.++.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444555555555555555554421001111 233333444455555555555555544
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.85 E-value=36 Score=38.66 Aligned_cols=313 Identities=12% Similarity=0.071 Sum_probs=163.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHH
Q 004244 401 INGFSQHGFLDEAYRLLNEMTKNGFMPSI--VTYNALIKGHCTGGRVEDAVGVLHGMARKGL-------APDVVSYSTII 471 (766)
Q Consensus 401 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li 471 (766)
.-|....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++.......- .+....-.++.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 44567788888888888776542111222 2333344455566666677777776655311 11122333444
Q ss_pred HHHHccCC-HHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004244 472 SGFSRSQE-LDKAFDTKREMVEKGVLPDTIT--YS--SLIHGLCEQRRITEACELFQEMLSRGMSPDEFTYTTLINAYCT 546 (766)
Q Consensus 472 ~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~--~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 546 (766)
-+..-.|. -+++.+.+..+.... +... .. +|.-.++-.|+.+....++..+.+.. ..+..-.-.+.-++..
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhh
Confidence 44444443 245666666666542 2221 22 23333456688888888888777642 2222222333344557
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHH
Q 004244 547 EGDIPQALRLHDEMIQKGFLPDVVTYS--VLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAA 624 (766)
Q Consensus 547 ~g~~~~A~~~~~~~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 624 (766)
.|+.+.+..+.+.+... ..|....-. ++.-+|+..|+.....+++..+... .. +.+--.++++
T Consensus 537 ~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~-d~VRraAVia------------ 601 (963)
T 4ady_A 537 YGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SN-DDVRRAAVIA------------ 601 (963)
T ss_dssp TTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SC-HHHHHHHHHH------------
T ss_pred CCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-Cc-HHHHHHHHHH------------
Confidence 78999888888888764 122222222 2334567788887777788888764 12 2222222221
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHh
Q 004244 625 LLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNV-QKAYDLYKKMVRSGFVPHTVTIIVL--VKALHT 701 (766)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l--~~~~~~ 701 (766)
-+....|+.+.+.++++.+.+.+ .|....-..+.-+..-.|+. .+|++.+..+.. .+|..+-... .-+...
T Consensus 602 --LGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 602 --LGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp --HHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred --HHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 34445566666677776666543 34443333444444445554 688889998873 4555433322 333344
Q ss_pred cCChHH----HHHHHH---HHHHc-CCCChHHHHHHHHHHHhcCC
Q 004244 702 AGMNEE----LSQVIE---NILRS-CRLSDAELAKVLVEINHKEG 738 (766)
Q Consensus 702 ~g~~~~----A~~~~~---~~~~~-~~~~~~~~~~~l~~~~~~~g 738 (766)
.|..+. ...+.+ +.... ...+....-..++.++...|
T Consensus 676 ~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 676 IQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp TTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred cCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 443332 333333 33322 21233444556666665554
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.57 E-value=9.5 Score=45.37 Aligned_cols=124 Identities=12% Similarity=0.108 Sum_probs=81.7
Q ss_pred HhhhhhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004244 626 LKGFCMKGLMNEADRVFELMLQRNHMPN----EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHT 701 (766)
Q Consensus 626 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 701 (766)
+..+.+.|.++.++++-+..++.....+ ...|..+..++.+.|++++|...+-.+.+... -......|+..+|.
T Consensus 906 ~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce 983 (1139)
T 4fhn_B 906 SKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTK 983 (1139)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHh
Confidence 3778888999999998887775322212 22578889999999999999999988875433 34667778888887
Q ss_pred cCChHHH------------HHHHHH-HHHc-CCCChHHHHHHHHHHHhcCCChhHHHHHH-HHHH
Q 004244 702 AGMNEEL------------SQVIEN-ILRS-CRLSDAELAKVLVEINHKEGNMDAVLNVL-TEMA 751 (766)
Q Consensus 702 ~g~~~~A------------~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~m~ 751 (766)
.|..++- ..++.. +... .+...+..|..|...+...|++..|..++ +++.
T Consensus 984 ~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 984 QGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 7665543 222222 2111 11222345677777777888888776654 4443
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.16 E-value=4.8 Score=44.69 Aligned_cols=134 Identities=11% Similarity=0.071 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhC------CCCC
Q 004244 145 SSAVIDLVVKSYSHLNM-IDKAVNIVNLAKVHGFMPGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKS------RVSP 217 (766)
Q Consensus 145 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~------g~~~ 217 (766)
+..+.+.|++.+.-.|+ ++.|+.+|+.+.......+.....+++..+.+.+. . --+|.++..+..+. ..++
T Consensus 247 ~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~-~-Ev~av~ll~~~l~~~~~~~~~l~~ 324 (754)
T 4gns_B 247 NNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIET-K-ELDMITILNETLDPLLSLLNDLPP 324 (754)
T ss_dssp SSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGG-G-HHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhh-h-hHHHHHHHHHHHHHhhhhhhhhcc
Confidence 44566777777777776 58899999988775422222222333433333331 1 13455555544321 1111
Q ss_pred -CHH----------HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 004244 218 -NVY----------TYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMG 281 (766)
Q Consensus 218 -~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 281 (766)
+.. ....-.+-|...|+++-|+++-++....- +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 325 ~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 325 RDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111 11122334556788888888888887752 3457788888888888888888888888774
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.97 E-value=27 Score=36.18 Aligned_cols=257 Identities=12% Similarity=0.128 Sum_probs=136.2
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCh
Q 004244 477 SQELDKAFDTKREMVEK-----GVLPDTITYSSLIHGLCEQRRITEACELFQEMLSR-GMSPDEFTYTTLINAYCTEGDI 550 (766)
Q Consensus 477 ~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~ 550 (766)
.|+++.|++.+..+.+. +..........++..|...|+++...+.+..+... |.. ......+++.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~------- 99 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQK------- 99 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHH-------
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHH-------
Confidence 47888998887766643 23445667888899999999999988877766543 321 2222233322
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCH----HHH--HHHHHHHHhC-CCCCcHH-hHHHHhhhhchh---
Q 004244 551 PQALRLHDEMIQKGFLPDVVTYSVLINGLN--KQART----MEA--KKLLLKLFYD-ESVPSDV-IYNTLIENCTNI--- 617 (766)
Q Consensus 551 ~~A~~~~~~~~~~g~~p~~~~~~~li~~~~--~~g~~----~~A--~~l~~~~~~~-~~~p~~~-~~~~ll~~~~~~--- 617 (766)
+...+.... .++..+...++..+. ..|+. +.| ...+.++... |-..... ....+...+...
T Consensus 100 --~~~~l~~~~----~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~ 173 (445)
T 4b4t_P 100 --VMEYLKSSK----SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM 173 (445)
T ss_dssp --HHHHHHHHC----TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH
T ss_pred --HHHHHhcCC----chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH
Confidence 222332221 234555555555442 23331 222 1222222221 2111110 111111111110
Q ss_pred --hhhhHHHHHhhhhhcCCHHHHHHHHHHHH----hCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCC
Q 004244 618 --EFQNVAALLKGFCMKGLMNEADRVFELML----QRNHMPN--EAVYDIIIHGHSKVGNVQKAYDLYKKMVRSG-FVPH 688 (766)
Q Consensus 618 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~ 688 (766)
....+...+..|...+++..|..++.++. .....|+ ...|...+..+...+++.+|...|.++.+.. ..-|
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d 253 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD 253 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC
Confidence 12334456688899999999999998874 2222222 3456777888889999999999988886421 1223
Q ss_pred HHHHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcC--CChhHHHHHHH
Q 004244 689 TVTII----VLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKE--GNMDAVLNVLT 748 (766)
Q Consensus 689 ~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 748 (766)
...+. .++....-.+....-.....+........+...+..+..+|... .+|+.+.+.+.
T Consensus 254 ~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 254 EAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 32222 22233334444444444554444444334556677777777643 45565555544
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.23 E-value=14 Score=43.83 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004244 359 VVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPN----EKTYTTLINGFSQHGFLDEAYRLLNEMTKNGFMPSIVTYNA 434 (766)
Q Consensus 359 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ 434 (766)
..-|..++..+.+.|.++.+.++-+..++.....+ ...|..+...+...|++++|...+-.+..... -......
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 34567777777788888888777766655422212 12467778888888888888888877766533 2345666
Q ss_pred HHHHHHhcCCHHH
Q 004244 435 LIKGHCTGGRVED 447 (766)
Q Consensus 435 ll~~~~~~g~~~~ 447 (766)
|+..+|..|..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 6666666665544
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.88 E-value=38 Score=36.71 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004244 633 GLMNEADRVFELMLQRN-HMPNE--AVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELS 709 (766)
Q Consensus 633 g~~~~A~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 709 (766)
.+.+.|...+....+.. ..+.. ..+..++......+...++...+.+.... .++.......+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 37889999998886432 22211 12233333444455456677777765533 233333333334445679999999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004244 710 QVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
.+++++-... ........-++.++.+.|+.++|..+|.++.+
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9998876543 22233334477888889999999999988764
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.34 E-value=26 Score=34.14 Aligned_cols=80 Identities=10% Similarity=-0.097 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCChHHHH-H
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTA---GMNEELSQVIENILRSCRLSDAELA-K 728 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~-~ 728 (766)
++.....++..|.+.|++.+|...|-. |-.-|...+..++.-.... |...+ ...+ .
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e----------------~dlf~~ 192 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDST----------------VAEFFS 192 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHH----------------HHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcch----------------HHHHHH
Confidence 778888899999999999998886652 3212344444443333332 33332 2222 2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHH
Q 004244 729 VLVEINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 729 ~l~~~~~~~g~~~~A~~~~~~m~~ 752 (766)
..+-.|.-.|+...|.++++...+
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333345567788888877776554
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.89 E-value=28 Score=34.16 Aligned_cols=80 Identities=10% Similarity=-0.029 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHH-HHHHH
Q 004244 653 NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAEL-AKVLV 731 (766)
Q Consensus 653 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~ 731 (766)
|+.....++..|.+.+++.+|...|- . |-.+....+..++.-+...+. +.+... ....+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~----------------~~e~dlfiaRaV 194 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDE----------------SHTAPLYCARAV 194 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSC----------------GGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcC----------------CccHHHHHHHHH
Confidence 77778889999999999999888773 2 444444555544443333332 222222 23444
Q ss_pred HHHhcCCChhHHHHHHHHHHH
Q 004244 732 EINHKEGNMDAVLNVLTEMAK 752 (766)
Q Consensus 732 ~~~~~~g~~~~A~~~~~~m~~ 752 (766)
-.|.-.|+...|.++++...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 556668888888887766554
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.82 E-value=2 Score=44.00 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=26.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004244 695 LVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEINHKEGNMDAVLNVLTE 749 (766)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (766)
++..+...|+.++|+..++.++..+ |-+...|..++.+|.+.|+..+|++.|++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444555555555555555444 33344445555555555555555555444
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.72 E-value=3.7 Score=35.49 Aligned_cols=106 Identities=9% Similarity=0.137 Sum_probs=71.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHhccCChHHHHHHHHHHHHc--CC-----------
Q 004244 627 KGFCMKGLMNEADRVFELMLQRN-HMPN-------EAVYDIIIHGHSKVGNVQKAYDLYKKMVRS--GF----------- 685 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~----------- 685 (766)
..+...|.++.|+-+.+.+.... .+|+ ..++..+++++...|++.+|...|+++++. .+
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 56677889999988888765311 1233 235677889999999999999999996521 11
Q ss_pred -----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004244 686 -----------VPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAELAKVLVEIN 734 (766)
Q Consensus 686 -----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 734 (766)
.++.+.-..+..++.+.|+.++|+..++.+-.+. -...+-..|++.|
T Consensus 108 ~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakLy 165 (167)
T 3ffl_A 108 NSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANLY 165 (167)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHHC
T ss_pred ccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHHh
Confidence 1112333457888899999999999988865442 2344444555544
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.88 E-value=43 Score=32.55 Aligned_cols=26 Identities=19% Similarity=-0.116 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH
Q 004244 463 DVVSYSTIISGFSRSQELDKAFDTKR 488 (766)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~ 488 (766)
++.....+...|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56666777777777777777766543
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.53 E-value=7.9 Score=30.05 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004244 515 ITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQK 563 (766)
Q Consensus 515 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 563 (766)
.=+..+-++.+...++.|++....+.+.+|-+.+++..|.++++....+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445555555555566666666666666666666666666666666543
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.46 E-value=6 Score=41.06 Aligned_cols=56 Identities=11% Similarity=-0.011 Sum_probs=25.5
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHH
Q 004244 625 LLKGFCMKGLMNEADRVFELMLQRNHMP--NEAVYDIIIHGHSKVGNVQKAYDLYKKM 680 (766)
Q Consensus 625 l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 680 (766)
+...|.+.|++++|.+.+.++.+....+ -...+..+++.+...++|..+...++++
T Consensus 137 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 137 LGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344455555555555555544321111 2333444444455555555555555444
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.77 E-value=12 Score=29.00 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004244 306 KETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLIN 367 (766)
Q Consensus 306 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 367 (766)
-+..+-++.+....+.|++.+..+.+.+|-+.+++..|.++++-+.... .....+|..++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3555666666666777777777777777777777777777777766542 223344555443
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.60 E-value=22 Score=27.43 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=23.7
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 004244 229 FCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLK 283 (766)
Q Consensus 229 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 283 (766)
+...|++++|..+.+.+ +.||...|-+|-.. +.|.-+++...+.++...
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 44555555555544333 24555555544332 445555555555444443
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.18 E-value=92 Score=33.74 Aligned_cols=136 Identities=9% Similarity=0.050 Sum_probs=66.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 004244 334 YCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGFLDEA 413 (766)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 413 (766)
..+.|+++.+..+...+...-+ .....|..|.... .....++...++++-... +.....-+..+..+.+.+++...
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAVTVTNFVRANPTL--PPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhCCCHHHH
Confidence 3456777777776655432211 1111232222211 122344444444432211 11122234445566667777666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 004244 414 YRLLNEMTKNGFMPSIVTYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQE 479 (766)
Q Consensus 414 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 479 (766)
...+.. .+.+...-.....+....|+..+|......+-..|.. .......++..+.+.|.
T Consensus 92 l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 92 LAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTC
T ss_pred HHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCC
Confidence 654432 2334444455666677778877777766666555432 34455556665555443
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.74 E-value=63 Score=31.66 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 004244 531 SPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTL 610 (766)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l 610 (766)
.-|+.....+...|.+.+++.+|...|- .|-.+....+..++.-+...+...+ ++...-.++
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHH
Confidence 3456666777788888888888777662 1333334555444433333332211 222222333
Q ss_pred hhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHH
Q 004244 611 IENCTNIEFQNVAALLKGFCMKGLMNEADRVFELML 646 (766)
Q Consensus 611 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (766)
+ .|.-.++...|..+++...
T Consensus 195 L----------------~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 L----------------PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H----------------HHHHTTCHHHHHHHHHHHH
T ss_pred H----------------HHHHhCCHHHHHHHHHHHH
Confidence 3 4555778888888766554
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.52 E-value=8 Score=36.44 Aligned_cols=113 Identities=18% Similarity=0.241 Sum_probs=74.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHh
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT----VTIIVLVKALHT 701 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~ 701 (766)
....+.|++++|++....-++.. | |...-..++..+|-.|+|++|.+-++.+.+. .|+. ..|..++.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH--
Confidence 45668899999999999888753 5 7888888999999999999999999988754 4554 3344444331
Q ss_pred cCChHHHHHHHHHHHHcC----CCCh-HHHHHHHHHH--HhcCCChhHHHHHHHHHHHC
Q 004244 702 AGMNEELSQVIENILRSC----RLSD-AELAKVLVEI--NHKEGNMDAVLNVLTEMAKD 753 (766)
Q Consensus 702 ~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~ 753 (766)
..=+++..-+ ...+ ..-...++.+ ....|+.++|.++..++.+.
T Consensus 79 --------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 --------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1122222221 1111 2222233333 34579999999999888665
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.37 E-value=22 Score=27.47 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=22.2
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 004244 229 FCGVGDLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLK 283 (766)
Q Consensus 229 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 283 (766)
+...|++++|..+.+.+ +.||...|-+|-. .+.|.-+++...+.++..+
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 44455555554443332 2455555544432 2444445554444444443
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.12 E-value=19 Score=33.89 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=53.2
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChH--HHHHHHHH
Q 004244 662 HGHSKVGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDA--ELAKVLVE 732 (766)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~ 732 (766)
..+.+.|++++|++....-++.. +-|...-..++..+|-.|++++|.+.++.+.+.++.... ..|..++.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence 34668999999999999988753 344455567899999999999999999999999744433 24544443
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.18 E-value=22 Score=27.48 Aligned_cols=78 Identities=12% Similarity=0.051 Sum_probs=47.6
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 004244 234 DLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILN 313 (766)
Q Consensus 234 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 313 (766)
..++|..+-+.+...+. ...+--.-+..+...|+|++|..+.+.+. .||...|-.+-.. +.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 45566666666665543 22222233345667788888887776654 5777777665543 5677777777776
Q ss_pred HHHHCC
Q 004244 314 EISRKG 319 (766)
Q Consensus 314 ~m~~~g 319 (766)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 666655
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=68.43 E-value=41 Score=27.71 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004244 514 RITEACELFQEMLSRGMSPDEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLIN 577 (766)
Q Consensus 514 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 577 (766)
+.=+..+-++.+...++.|++......+.+|-+.+++..|.++++....+ ..+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34455666666667777888888888888888888888888888877754 2333445655553
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.68 E-value=21 Score=27.52 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=45.9
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 004244 234 DLEMGLRFFSEMEKNNCLANVVTYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILN 313 (766)
Q Consensus 234 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 313 (766)
..++|..+-+.+...+. ...+--.-+..+...|+|++|..+.+.+. .||...|-.+-.. +.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 44556666666655542 22222223345567788888777666553 4777777665443 6677777777666
Q ss_pred HHHHCC
Q 004244 314 EISRKG 319 (766)
Q Consensus 314 ~m~~~g 319 (766)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666654
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.89 E-value=27 Score=28.82 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 004244 307 ETKGILNEISRKGLVPDEVTYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLI 366 (766)
Q Consensus 307 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 366 (766)
+..+-++.+....+.|++.+....+.+|-+.+++..|.++++-++.+ +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455555556666677777777777777777777777777666554 222333455444
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.94 E-value=40 Score=30.13 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=44.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCh
Q 004244 667 VGNVQKAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSD 723 (766)
Q Consensus 667 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 723 (766)
.+...++.++|..|..+|+--. ...|...+..+...|++++|..+|+..++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4557789999999988776544 36677888888899999999999999998865553
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.49 E-value=55 Score=33.69 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 537 YTTLINAYCTEGDIPQALRLHDEMIQK--GFLPDVVTYSVLINGLNKQARTMEAKKLLLKL 595 (766)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 595 (766)
...+...|.+.|+++.|.+.+.++... +...-...+-..+..+...+++..+...+.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344555555555555555555555432 11222334444455555555555555555544
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.34 E-value=50 Score=29.53 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 004244 632 KGLMNEADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT 689 (766)
Q Consensus 632 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 689 (766)
+++..++..+|..|...|+-- -+.-|...+..+...|++++|.++|+.-++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 556889999999999877654 5777889999999999999999999999988877844
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=58.96 E-value=1.5e+02 Score=29.78 Aligned_cols=93 Identities=15% Similarity=0.036 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHH-
Q 004244 434 ALIKGHCTGGRVEDAVGVLHGMARK--GLAP---DVVSYSTIISGFSRSQELDKAFDTKREMVEK--GVLPDTITYSSL- 505 (766)
Q Consensus 434 ~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l- 505 (766)
-++..|...|++.+|..++..+.+. .... -...+-.-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3455555666666665555555442 1110 1122333445555666666666555544322 111222221111
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHHH
Q 004244 506 ---IHGLC-EQRRITEACELFQEML 526 (766)
Q Consensus 506 ---i~~~~-~~g~~~~A~~~~~~m~ 526 (766)
.-.+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11234 5666666666655543
No 275
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=58.13 E-value=1.4e+02 Score=28.95 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004244 669 NVQKAYDLYKKMVRSGFVPHT--VTIIVLVKALHTAGMNEELSQVIENILRSCRLS 722 (766)
Q Consensus 669 ~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 722 (766)
+..+.+++-.-+....++|.. -++...+...++.+++..|..+.+++++.++.+
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 345556666666555555544 344566677788888888888888888887543
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.47 E-value=2.2e+02 Score=31.03 Aligned_cols=342 Identities=10% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCChHHHHHHHHHHHHCC--CCCChHHHHH
Q 004244 294 VIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYC-------KEGNLHQALVLHAEMVRNG--LSPNVVTYTS 364 (766)
Q Consensus 294 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ 364 (766)
.+|--+.++|++++|.++.++.... +.--...+...+..|+ ....-++...-|+...+.. ..|=....-.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 235 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYK 235 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC------------------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHH
Q 004244 365 LINSMCKSGNLNRAMEFFDQMHVR---ELRPNEKTYTTLINGFSQHG-----------FLDEAYRLLNEMTKNGFMPSIV 430 (766)
Q Consensus 365 li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~g~~~~~~ 430 (766)
+|..+ +.... .+..+..-|--+=-.+++.+ -+++-.+.+.+.-+.-+.+
T Consensus 236 Iig~c--------------D~~~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~--- 298 (661)
T 2qx5_A 236 LIGRC--------------DLSRKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN--- 298 (661)
T ss_dssp HHHTC--------------CGGGCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT---
T ss_pred HHhcc--------------cccccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh---
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004244 431 TYNALIKGHCTGGRVEDAVGVLHGMARKGLAPDVVSYSTIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLC 510 (766)
Q Consensus 431 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 510 (766)
.....+.-.|+++.|...+... ...+.+++...+.-|.-.+- -..+......-...-+..||..|.
T Consensus 299 ---lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt 364 (661)
T 2qx5_A 299 ---YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYT 364 (661)
T ss_dssp ---CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHH
T ss_pred ---HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHH
Q ss_pred hc---CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHH-----------HHHHHHHHCCCCCCH------
Q 004244 511 EQ---RRITEACELFQEMLSRG-MSPDEFTYTTLINAYCTEGDIPQAL-----------RLHDEMIQKGFLPDV------ 569 (766)
Q Consensus 511 ~~---g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~-----------~~~~~~~~~g~~p~~------ 569 (766)
+. .+..+|.++|-.+-..+ ..........+-......++++.-+ -++++.... +..+.
T Consensus 365 ~~F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~l-i~l~d~~~~~~ 443 (661)
T 2qx5_A 365 KSFRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPL-LHVRDEKEFLH 443 (661)
T ss_dssp TTTTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGG-GTCSCHHHHHH
T ss_pred HHhhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcc-cccccHHHHHH
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcC---------------C
Q 004244 570 VTYSVLINGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKG---------------L 634 (766)
Q Consensus 570 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g---------------~ 634 (766)
........-+...|++++|+.+|.-.-+ ..--....+.+++ .+..... -
T Consensus 444 ~i~~~aA~~ae~~G~~~dAi~LY~La~~--~d~vl~lln~~Ls--------------~~l~~~~~~~~~~~~~~~~~~~l 507 (661)
T 2qx5_A 444 TITEQAARRADEDGRIYDSILLYQLAEE--YDIVITLVNSLLS--------------DTLSASDLDQPLVGPDDNSETNP 507 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTC--HHHHHHHHHHHHH--------------HHHHHSCTTSCSSCSSCCTTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhcC--HHHHHHHHHHHHH--------------HHhcccccccccccccccccccH
Q ss_pred HHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHH-----HhccCChHHHHHHHHHHHHcCCCC
Q 004244 635 MNEADRVFELMLQR-----NHMP-NEAVYDIIIHG-----HSKVGNVQKAYDLYKKMVRSGFVP 687 (766)
Q Consensus 635 ~~~A~~~~~~~~~~-----~~~p-~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~~~~~p 687 (766)
...|.++.+..... .+.+ +..|+..|++. +...|+|++|++.++++ ++-|
T Consensus 508 ~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llP 568 (661)
T 2qx5_A 508 VLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLP 568 (661)
T ss_dssp HHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSC
T ss_pred HHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.96 E-value=1.4e+02 Score=26.52 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 004244 322 PDEVTYNTLLNGYCKEGN 339 (766)
Q Consensus 322 p~~~~~~~li~~~~~~g~ 339 (766)
++..+-...+.++.+.|.
T Consensus 124 ~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 344444444444444443
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.70 E-value=1.2e+02 Score=25.64 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 004244 638 ADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVP 687 (766)
Q Consensus 638 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 687 (766)
+..+|..|...|+-- -+.-|......+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555444332 23444445555555555555555555555444444
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.58 E-value=42 Score=30.75 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=12.2
Q ss_pred HHhcCChhhHHHHHHHHHhCCCC
Q 004244 229 FCGVGDLEMGLRFFSEMEKNNCL 251 (766)
Q Consensus 229 ~~~~g~~~~A~~~~~~m~~~g~~ 251 (766)
.++.|+.+....+++.+.+.|..
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Confidence 44556666555555555544433
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.32 E-value=42 Score=31.62 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=4.9
Q ss_pred HHHHHHHHHCCC
Q 004244 414 YRLLNEMTKNGF 425 (766)
Q Consensus 414 ~~l~~~m~~~g~ 425 (766)
.++++.+.+.|.
T Consensus 199 ~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 199 EAITHLLLDHGA 210 (285)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 334444444443
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.35 E-value=1e+02 Score=26.12 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004244 671 QKAYDLYKKMVRSGFVPH-TVTIIVLVKALHTAGMNEELSQVIENILRSCRLS 722 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 722 (766)
+++.++|..|..+|+--. ...|...+..+...|++++|..+++..++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 447777777776665433 3556666777777788888888887777775444
No 282
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=45.35 E-value=1.8e+02 Score=28.10 Aligned_cols=49 Identities=6% Similarity=0.083 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 004244 672 KAYDLYKKMVRSGFVPHT--VTIIVLVKALHTAGMNEELSQVIENILRSCR 720 (766)
Q Consensus 672 ~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 720 (766)
..+++-.-+....+.|.. -++...+...++.+++..|..+.+++++.++
T Consensus 179 R~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 229 (320)
T 3mkr_B 179 RICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGP 229 (320)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 344555555544555543 3444566777788888888888888888763
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.87 E-value=45 Score=30.52 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=40.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHH
Q 004244 260 LIDGYCKLGRIDDAFKLLRDMGLKGIEPNLIS--YNVIINGLCKEGRLKETKGILNEISRKGLVPDEVT--YNTLLNGYC 335 (766)
Q Consensus 260 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~ 335 (766)
.+...++.|+.+....+++.+...|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 34455667777777777776655554443221 112233344555543 3333444554443211 112334445
Q ss_pred hcCChHHHHHHHHH
Q 004244 336 KEGNLHQALVLHAE 349 (766)
Q Consensus 336 ~~g~~~~A~~~~~~ 349 (766)
..|+.+-...+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 55665554444443
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.77 E-value=1.4e+02 Score=25.57 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCH
Q 004244 637 EADRVFELMLQRNHMP-NEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPHT 689 (766)
Q Consensus 637 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 689 (766)
++..+|..|...|+-- -+..|......+...|++++|.++|+.-++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3566677777665544 4555666666677777777777777777766656643
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.20 E-value=1.3e+02 Score=25.82 Aligned_cols=55 Identities=7% Similarity=0.059 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChHH
Q 004244 671 QKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLSDAE 725 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 725 (766)
+++.++|..|..+|+--.. ..|...+..+-..|++.+|..+|+..++.+-.|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4577888888887765443 567777888888899999999999998887555433
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.88 E-value=28 Score=31.83 Aligned_cols=13 Identities=8% Similarity=-0.322 Sum_probs=5.4
Q ss_pred HhcCCHHHHHHHH
Q 004244 440 CTGGRVEDAVGVL 452 (766)
Q Consensus 440 ~~~g~~~~A~~~~ 452 (766)
++.|+.+-+..++
T Consensus 218 ~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 218 KQRKNVWMINHLQ 230 (240)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCcHHHHHHHH
Confidence 3444444443333
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=40.40 E-value=62 Score=30.40 Aligned_cols=10 Identities=10% Similarity=-0.060 Sum_probs=4.3
Q ss_pred HHHHHcCChh
Q 004244 262 DGYCKLGRID 271 (766)
Q Consensus 262 ~~~~~~g~~~ 271 (766)
...++.|+.+
T Consensus 10 ~~A~~~g~~~ 19 (285)
T 1wdy_A 10 IKAVQNEDVD 19 (285)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHcCCHH
Confidence 3334444443
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.60 E-value=61 Score=30.89 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=9.4
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 004244 366 INSMCKSGNLNRAMEFFDQ 384 (766)
Q Consensus 366 i~~~~~~g~~~~A~~~~~~ 384 (766)
+...+..|+.+-+.-+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3344455665555444444
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.22 E-value=2e+02 Score=28.45 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 004244 292 YNVIINGLCKEGRLKETKGILNEIS 316 (766)
Q Consensus 292 ~~~li~~~~~~g~~~~a~~~~~~m~ 316 (766)
...+|.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 3445555555566666666555543
No 290
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.55 E-value=1.4e+02 Score=29.57 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004244 433 NALIKGHCTGGRVEDAVGVLHGMA 456 (766)
Q Consensus 433 ~~ll~~~~~~g~~~~A~~~~~~~~ 456 (766)
..++.-|...|+.++|.+.++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 344455555556666655555554
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.19 E-value=2e+02 Score=26.51 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=46.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004244 506 IHGLCEQRRITEACELFQEMLSR--GMSP----DEFTYTTLINAYCTEGDIPQALRLHDEMIQKGFLPDVVTYSVLINGL 579 (766)
Q Consensus 506 i~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~ 579 (766)
++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 45566666777776666655431 1121 1111112222222222223333444444 22 45566666777888
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004244 580 NKQARTMEAKKLLLKLF 596 (766)
Q Consensus 580 ~~~g~~~~A~~l~~~~~ 596 (766)
.+.|+.++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 88888888888876654
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.65 E-value=2e+02 Score=26.46 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004244 358 NVVTYTSLINSMCKSGNLNRAMEFFDQM 385 (766)
Q Consensus 358 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 385 (766)
+.......+..+.+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444444555566666666666665443
No 293
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.63 E-value=2.4e+02 Score=24.85 Aligned_cols=169 Identities=10% Similarity=0.001 Sum_probs=88.3
Q ss_pred CCHhhHHHHHHHHHHcCCCCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCcCHHHHH
Q 004244 179 PGVLSYNAILDSVIRSGRNNWVKFAEEVYNEMGKSRVSPNVYTYNVLIRGFCGVGDLEMGLRFFSEMEKNNCLANVVTYN 258 (766)
Q Consensus 179 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 258 (766)
++...-...+.++.+.+. ..+...+.++... +|...-...+.++.+.|+.+ +...+..+.+ .+|..+-.
T Consensus 31 ~~~~vR~~A~~~L~~~~~----~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~ 99 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD----ERAVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQ 99 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC----GGGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----ccHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHH
Confidence 344444444555555552 2344444444432 45555556666666666543 3344444443 24556666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004244 259 TLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEG 338 (766)
Q Consensus 259 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 338 (766)
..+.++.+.|+.+ +...+.++.. .++...-...+.++.+.|.. ++...+.++.+ .++..+-...+.++.+.+
T Consensus 100 ~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 100 SAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 6666777766643 3344444443 25665666666666666654 34444555543 256666666667777766
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004244 339 NLHQALVLHAEMVRNGLSPNVVTYTSLINSMC 370 (766)
Q Consensus 339 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 370 (766)
. .++...+..+.+. ++..+-...+.++.
T Consensus 172 ~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 172 G-ERVRAAMEKLAET---GTGFARKVAVNYLE 199 (211)
T ss_dssp S-HHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 5 3455555555543 34444444444443
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.53 E-value=27 Score=32.67 Aligned_cols=24 Identities=8% Similarity=-0.089 Sum_probs=12.4
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCc
Q 004244 229 FCGVGDLEMGLRFFSEMEKNNCLA 252 (766)
Q Consensus 229 ~~~~g~~~~A~~~~~~m~~~g~~~ 252 (766)
.++.|+.+....+++.+.+.|..+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~ 35 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRL 35 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCc
Confidence 344556665555555555444333
No 295
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.65 E-value=2.5e+02 Score=24.23 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHhhhhchhhhhhHHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004244 576 INGLNKQARTMEAKKLLLKLFYDESVPSDVIYNTLIENCTNIEFQNVAALLKGFCMKGLMNEADRVFELMLQRNHMPNEA 655 (766)
Q Consensus 576 i~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 655 (766)
|.-..+-.+++.+.-+-.-+ .|....|..++. -.+.-.|.+..++-++...-.. +..
T Consensus 9 I~Ks~kY~dYdt~~fLsa~L-----~~~~~eY~lL~~--------------I~LyyngEY~R~Lf~L~~lNT~----Ts~ 65 (242)
T 3kae_A 9 ICKSIRYRDYETAIFLAACL-----LPCKPEYRMLMS--------------IVLYLNGEYTRALFHLHKLNTC----TSK 65 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----C----CTHHHHH--------------HHHHHTTCHHHHHHHHHTCCBH----HHH
T ss_pred HHHHhhcccccHHHHHHHHH-----ccCChHHHhhhh--------------hhhhhcchHhHHHHHHHhcchH----HHH
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004244 656 VYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH-----------------TVTIIVLVKALHTAGMNEELSQVIENILRS 718 (766)
Q Consensus 656 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (766)
-|..| +|-+.+++..|+..++.+++..+.-| ...++.++..|...|+.++|+.++......
T Consensus 66 YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 66 YYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Q ss_pred CCCChHH
Q 004244 719 CRLSDAE 725 (766)
Q Consensus 719 ~~~~~~~ 725 (766)
.+...+.
T Consensus 144 ~~lf~~v 150 (242)
T 3kae_A 144 SFLFSPV 150 (242)
T ss_dssp CCCHHHH
T ss_pred ccccchH
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.31 E-value=40 Score=30.74 Aligned_cols=53 Identities=8% Similarity=-0.054 Sum_probs=23.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004244 365 LINSMCKSGNLNRAMEFFDQMHVRELRPNEKT--YTTLINGFSQHGFLDEAYRLLNEMT 421 (766)
Q Consensus 365 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~ 421 (766)
.+...+..|+.+-+.-++ +.|..++... -.+-+...++.|+.+-+.-+++...
T Consensus 180 ~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence 344455666665444433 3343333211 1123444455666665555554433
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.31 E-value=3.5e+02 Score=26.05 Aligned_cols=68 Identities=24% Similarity=0.357 Sum_probs=42.8
Q ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC--hHHHHHHHHHHHHcCCCCCHH
Q 004244 622 VAALLKGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGN--VQKAYDLYKKMVRSGFVPHTV 690 (766)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 690 (766)
...++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+....++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 346668899999999999999988531000 23344555555555433 355667777777666554443
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.11 E-value=91 Score=29.60 Aligned_cols=155 Identities=6% Similarity=0.021 Sum_probs=71.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCcCHH--HHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH---HHHHHHHHH
Q 004244 225 LIRGFCGVGDLEMGLRFFSEMEKNNCLANVV--TYNTLIDGYCKLGRIDDAFKLLRDMGLKGIEPNLI---SYNVIINGL 299 (766)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~li~~~ 299 (766)
.+...+..|+.+-+.. +.+.|..++.. .-.+.+...+..|+.+-+.-+++. |..++.. -+.+.+...
T Consensus 65 ~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A 136 (285)
T 3kea_A 65 PLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHA 136 (285)
T ss_dssp HHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHH
T ss_pred HHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHH
Confidence 3444556666654433 33445444321 112334455567776655555443 3333322 223444455
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 004244 300 CKEGRLKETKGILNEISRKGLVPDEV-TYNTLLNGYCKEGNLHQALVLHAEMVRNGLSPNVVTYTSLINSMCKSGNLNRA 378 (766)
Q Consensus 300 ~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 378 (766)
+..|+.+- ++.+.+.|..+... .-.+.+...+..|..+-+.-+++.-...... |..-.+..+...+..|+.+
T Consensus 137 ~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~-- 209 (285)
T 3kea_A 137 VMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIE-- 209 (285)
T ss_dssp HHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHH--
T ss_pred HHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHH--
Confidence 56666543 34444444333111 2334455666778877766666554332211 1111222233344555543
Q ss_pred HHHHHHHHHCCCCCCHhH
Q 004244 379 MEFFDQMHVRELRPNEKT 396 (766)
Q Consensus 379 ~~~~~~m~~~~~~~~~~~ 396 (766)
+.+.+.+.|..++...
T Consensus 210 --~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 210 --MLQALFKYDINIYSAN 225 (285)
T ss_dssp --HHHHHTTSCBCSTTTT
T ss_pred --HHHHHHHcCCCCCCCC
Confidence 4444556666655443
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.13 E-value=81 Score=28.70 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004244 671 QKAYDLYKKMVRSGFVPHT-VTIIVLVKALHTAGMNEELSQVIENILRSCRLS 722 (766)
Q Consensus 671 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 722 (766)
+++.++|..|..+|+--.. ..|...+..+...|++++|..+|+..++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3555566666655543332 445555555566666666666666666554333
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.63 E-value=2.3e+02 Score=32.59 Aligned_cols=106 Identities=11% Similarity=0.003 Sum_probs=65.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC------------------
Q 004244 627 KGFCMKGLMNEADRVFELMLQRNHMPNEAVYDIIIHGHSKVGNVQKAYDLYKKMVRSGFVPH------------------ 688 (766)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------------------ 688 (766)
..+...|..+-|.++. .. ++.++..--.++.+|...|++++|.+.|+++- .|+..+
T Consensus 818 ~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 818 EKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCccc
Confidence 5566677777655433 21 22354444567888889999999999998764 122111
Q ss_pred -----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCChH----HHHHHHHHHHhcCC
Q 004244 689 -----TVTIIVLVKALHTAGMNEELSQVIENILRSCRLSDA----ELAKVLVEINHKEG 738 (766)
Q Consensus 689 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 738 (766)
...|..++..+-+.+-++.++.+.+.+++.-.+++. ..|..+.++.+..|
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 124556677777788888888888888865323332 35555555555443
No 301
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.31 E-value=1.4e+02 Score=26.02 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=13.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCC
Q 004244 260 LIDGYCKLGRIDDAFKLLRDMGLKGIEPN 288 (766)
Q Consensus 260 li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 288 (766)
.+...+..|..+.-.++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33344444444444444444555554443
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.84 E-value=1.9e+02 Score=26.29 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004244 341 HQALVLHAEMVRNGLSPN-VVTYTSLINSMCKSGNLNRAMEFFDQMHVRELRP 392 (766)
Q Consensus 341 ~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 392 (766)
+++.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355566666666555432 3445555666666666666666666666554444
No 303
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.65 E-value=1.7e+02 Score=25.07 Aligned_cols=55 Identities=11% Similarity=0.148 Sum_probs=39.5
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HhccCChHHHHHHHHHHHH
Q 004244 628 GFCMKGLMNEADRVFELMLQRNHMP--NEAVYDIIIH-G-----HSKVGNVQKAYDLYKKMVR 682 (766)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~m~~ 682 (766)
.+...|++=+|-++++.+......| +...|..||. . +.+.|++..|..++.+...
T Consensus 41 ~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 41 RLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455689999999999888664445 4556666666 2 3467888888888888764
No 304
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.51 E-value=38 Score=31.66 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=32.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHH-------HHHHHHHHH--HcCChhHHHHHHHHH
Q 004244 260 LIDGYCKLGRIDDAFKLLRDMGLKGIEPNLIS-------YNVIINGLC--KEGRLKETKGILNEI 315 (766)
Q Consensus 260 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-------~~~li~~~~--~~g~~~~a~~~~~~m 315 (766)
.+...++.|+.+....+++.+...|..++... ++.|..+.. +.|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34455677888887778877666655554332 233333321 457766666666554
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.15 E-value=3.6e+02 Score=23.93 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=25.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHcCCCC
Q 004244 667 VGNVQKAYDLYKKMVRSGFVPHTVTIIVLVKALHTAGMN-----EELSQVIENILRSCRLS 722 (766)
Q Consensus 667 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~ 722 (766)
..+.+.|+-.+.+|++.| .|....-+.++-+.-..|.- ..|...++.....|.|.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 345566666666666655 44433333444444444432 23334444444445433
No 306
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.70 E-value=2.7e+02 Score=24.10 Aligned_cols=27 Identities=7% Similarity=0.087 Sum_probs=12.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004244 332 NGYCKEGNLHQALVLHAEMVRNGLSPN 358 (766)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~g~~~~ 358 (766)
...+..|+.+.-.++.+.+++.|..++
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 333444444444444444555554443
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.91 E-value=2.1e+02 Score=23.29 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=12.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 004244 469 TIISGFSRSQELDKAFDTKREMV 491 (766)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~m~ 491 (766)
.++.=|...|+.++|.+.++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34455555556666655555553
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.39 E-value=3.3e+02 Score=22.94 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 004244 364 SLINSMCKSGNLNRAMEFFDQM 385 (766)
Q Consensus 364 ~li~~~~~~g~~~~A~~~~~~m 385 (766)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 309
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.12 E-value=1.8e+02 Score=26.04 Aligned_cols=18 Identities=11% Similarity=0.146 Sum_probs=9.0
Q ss_pred HHHHHcCChhHHHHHHHH
Q 004244 262 DGYCKLGRIDDAFKLLRD 279 (766)
Q Consensus 262 ~~~~~~g~~~~A~~l~~~ 279 (766)
...++.|+.+....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334445555555555543
No 310
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.72 E-value=6.2e+02 Score=25.79 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=14.7
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHH
Q 004244 476 RSQELDKAFDTKREMVEKGVLPDTIT 501 (766)
Q Consensus 476 ~~g~~~~A~~~~~~m~~~~~~p~~~~ 501 (766)
+.++.+.|+..+.+|.+.|..|....
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~ 292 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVA 292 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 34566666666666666655544333
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.36 E-value=5.2e+02 Score=24.78 Aligned_cols=67 Identities=10% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHH
Q 004244 468 STIISGFSRSQELDKAFDTKREMVEKGVLPDTITYSSLIHGLCEQRR--ITEACELFQEMLSRGMSPDEF 535 (766)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 535 (766)
..++.=|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+.+.|+-+...
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 44555666667777777777666422111 12334444444444322 345556666666555443333
No 312
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.21 E-value=1.1e+02 Score=26.64 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=6.1
Q ss_pred HHHHHHHHHCCCCC
Q 004244 414 YRLLNEMTKNGFMP 427 (766)
Q Consensus 414 ~~l~~~m~~~g~~~ 427 (766)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 33444444444433
No 313
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.49 E-value=4.3e+02 Score=23.42 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004244 365 LINSMCKS---GNLNRAMEFFDQMHVRELRPNEKTYTTLINGFSQHGF-----LDEAYRLLNEMTKNGFMPSIVTYNALI 436 (766)
Q Consensus 365 li~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~l~~~m~~~g~~~~~~~~~~ll 436 (766)
+|+++.|+ .+.+.|+-.+-+|++.|..|.-..-..++-+.-..|. ...|...++....-|.+--.......+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004244 437 KGHCTGGRVEDAVGVLHGMAR 457 (766)
Q Consensus 437 ~~~~~~g~~~~A~~~~~~~~~ 457 (766)
-.++..-+-..+...++...+
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.77 E-value=3.4e+02 Score=22.00 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 004244 364 SLINSMCKSGNLNRAMEFFDQM 385 (766)
Q Consensus 364 ~li~~~~~~g~~~~A~~~~~~m 385 (766)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.62 E-value=3.7e+02 Score=22.39 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=26.8
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004244 280 MGLKGIEPNLISYNVIINGLCKEGRLKETKGILNEISRKGLVPDEVTYNTLLNGYCKEG 338 (766)
Q Consensus 280 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 338 (766)
+.+.|+++ ...-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 18 l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444442 22333444444455555566666666655544444444443444444444
Done!