Query 004246
Match_columns 766
No_of_seqs 182 out of 324
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 18:58:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 7.9E-40 2.7E-44 291.4 -0.3 90 142-231 3-92 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 1.4E-38 4.8E-43 280.6 -0.8 83 146-228 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 99.9 1.8E-29 6.2E-34 208.9 1.4 59 146-204 2-60 (60)
4 1uad_C RSEC5, exocyst complex 66.0 15 0.0005 32.5 6.9 39 547-587 7-46 (99)
5 2cxk_A Camta1, calmodulin bind 53.3 39 0.0013 29.9 7.4 47 546-593 5-51 (95)
6 4hw6_A Hypothetical protein, I 47.9 38 0.0013 36.4 7.8 44 545-590 16-60 (433)
7 3hrp_A Uncharacterized protein 35.3 90 0.0031 32.9 8.1 40 545-586 14-54 (409)
8 3tc9_A Hypothetical hydrolase; 34.0 92 0.0031 33.2 8.0 67 548-632 18-86 (430)
9 1pby_A Quinohemoprotein amine 20.6 86 0.003 35.4 4.8 31 545-575 273-303 (489)
10 2dmb_A Filamin-B; beta-sandwic 18.0 4.4E+02 0.015 23.7 8.3 88 545-648 11-105 (124)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=7.9e-40 Score=291.44 Aligned_cols=90 Identities=63% Similarity=1.075 Sum_probs=80.4
Q ss_pred CCCCCCCceeccCCchhhccCchhhcccccchhhcCcceeeeCCchhhhhhhhccCccCccccCCcchHHHHHhhHhhhh
Q 004246 142 GGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRR 221 (766)
Q Consensus 142 ~~~~~~~~CqV~gC~~dL~~~k~Y~rR~rvCe~H~kA~~v~~~G~~~RFCQQC~rFH~L~eFd~~krSCr~~L~~hn~RR 221 (766)
+++++.++|||+||++||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||+||++||+||
T Consensus 3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR 82 (94)
T 1ul4_A 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 82 (94)
T ss_dssp -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCC
Q 004246 222 RKTNPDAVAN 231 (766)
Q Consensus 222 Rk~~~~~~~~ 231 (766)
||+++++...
T Consensus 83 Rk~~~~~~~~ 92 (94)
T 1ul4_A 83 RKSSGESGPS 92 (94)
T ss_dssp CSCCCC----
T ss_pred ccCCCCcCCC
Confidence 9999987643
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.4e-38 Score=280.60 Aligned_cols=83 Identities=52% Similarity=0.962 Sum_probs=79.4
Q ss_pred CCCceeccCCchhhccCchhhcccccchhhcCcceeeeCCchhhhhhhhccCccCccccCCcchHHHHHhhHhhhhccCC
Q 004246 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTN 225 (766)
Q Consensus 146 ~~~~CqV~gC~~dL~~~k~Y~rR~rvCe~H~kA~~v~~~G~~~RFCQQC~rFH~L~eFd~~krSCr~~L~~hn~RRRk~~ 225 (766)
+.++||||||++||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||+||++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 004246 226 PDA 228 (766)
Q Consensus 226 ~~~ 228 (766)
++.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 765
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.95 E-value=1.8e-29 Score=208.91 Aligned_cols=59 Identities=78% Similarity=1.372 Sum_probs=57.1
Q ss_pred CCCceeccCCchhhccCchhhcccccchhhcCcceeeeCCchhhhhhhhccCccCcccc
Q 004246 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204 (766)
Q Consensus 146 ~~~~CqV~gC~~dL~~~k~Y~rR~rvCe~H~kA~~v~~~G~~~RFCQQC~rFH~L~eFd 204 (766)
+.++|||+||++||+.+|+|||||||||.|+||++|+++|.++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=66.00 E-value=15 Score=32.55 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=32.9
Q ss_pred CceeeEeeeeeEecCCceEEEEEeeccCCCCceE-EEEEcCc
Q 004246 547 YSKILSVKPIAVPASERAQFFVKGINLGRSATRL-LCAVEGK 587 (766)
Q Consensus 547 ~p~I~~V~PlAv~ag~~~~~~v~G~NL~~p~tRl-Lcs~~Gk 587 (766)
.|+|..++|..-+-| +.+.++|.||......+ .+.+.|.
T Consensus 7 ~P~It~i~P~~Gp~G--T~vTI~G~nlg~~~sdv~~V~vgg~ 46 (99)
T 1uad_C 7 PPLVTGISPNEGIPW--TKVTIRGENLGTGPTDLIGLTICGH 46 (99)
T ss_dssp CCEEEEEESSEESTT--CEEEEEEECSCSSGGGEEEEEETTE
T ss_pred CCEEEEEECCCcCCC--CEEEEEEEeCCCCcccceEEEECCE
Confidence 579999999988665 99999999998886666 5888884
No 5
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=53.33 E-value=39 Score=29.86 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=38.8
Q ss_pred CCceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCceeeeec
Q 004246 546 NYSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEA 593 (766)
Q Consensus 546 ~~p~I~~V~PlAv~ag~~~~~~v~G~NL~~p~tRlLcs~~GkYL~~e~ 593 (766)
..-+|..++|-+-..+..+.+.|.|.+|... .++.|.|.+.-..+|.
T Consensus 5 ~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~g-s~~~~~fG~~~vpa~~ 51 (95)
T 2cxk_A 5 SSGMVTDYSPEWSYPEGGVKVLITGPWQEAS-NNYSCLFDQISVPASL 51 (95)
T ss_dssp CCSCCCEEECSEECTTCCCEEEEESSCCCCS-SCEEEEETTEEEECEE
T ss_pred CcEEEEEECCCcccCCCCEEEEEEeECCCCC-ccEEEEECCEEEeEEE
Confidence 3447999999999999999999999999754 5899999886554544
No 6
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=47.91 E-value=38 Score=36.38 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=36.5
Q ss_pred CCCc-eeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCceee
Q 004246 545 NNYS-KILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMV 590 (766)
Q Consensus 545 ~~~p-~I~~V~PlAv~ag~~~~~~v~G~NL~~p~tRlLcs~~GkYL~ 590 (766)
|+.| +|..+.|..- +..+++++.|.|+......+.|.|.|+-..
T Consensus 16 ~~~p~~i~~~~P~~g--~~~~~~~i~G~nfg~~~~~~~v~~~~~~a~ 60 (433)
T 4hw6_A 16 PKEEIVVEKFLPTEG--RKGTRVVVYGRNFGNDVSKVKVTIGGYPAK 60 (433)
T ss_dssp TTSCCEEEEEESSEE--CTTCEEEEEEECCCSCGGGEEEEETTEEEE
T ss_pred CCCCCEEEEECCCCC--CCCCEEEEEeECCCCCcceeEEEECCEEEE
Confidence 4455 9999999984 567789999999998888999999995544
No 7
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=35.34 E-value=90 Score=32.90 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=34.6
Q ss_pred CCCc-eeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcC
Q 004246 545 NNYS-KILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEG 586 (766)
Q Consensus 545 ~~~p-~I~~V~PlAv~ag~~~~~~v~G~NL~~p~tRlLcs~~G 586 (766)
++.| +|..+.|.. ++..+++++.|.|+......+.|.|.|
T Consensus 14 ~~~~~~~~~~~p~~--g~~~~~~~i~g~nfg~~~~~~~v~~~~ 54 (409)
T 3hrp_A 14 PNQPVTVESFMPVE--GKLREKVIVKGSNFGTDKSKVKVYFVD 54 (409)
T ss_dssp TTSCCEEEEEECSE--ECTTCEEEEEEECCCSCGGGEEEEEEC
T ss_pred CCCCcEEEEEcCCC--CCCCcEEEEEeEcCCCCccceEEEECC
Confidence 3444 999999996 456789999999999998999999999
No 8
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=33.97 E-value=92 Score=33.24 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=47.1
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeccCCCCceEEEEEcCceeeeecccccccCccCccccccceEEeeccCCCCCCCce-
Q 004246 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRG- 626 (766)
Q Consensus 548 p~I~~V~PlAv~ag~~~~~~v~G~NL~~p~tRlLcs~~GkYL~~e~~~~~~~g~~~~~~~dei~~l~~~~~~P~~~Gr~- 626 (766)
|.|..+.|..-. ..+++++.|.|+......+-|.+.|+--.. .. .. .+.|. |.+|...|.+
T Consensus 18 ~~i~~~~P~~g~--~~~~~~i~G~nfg~~~~~~~v~~~~~~~~v--~~--~~-------~~~i~-----~~vp~~~~~g~ 79 (430)
T 3tc9_A 18 VVISEFSPKEGG--LGTRMLLYGENFGSDISKIKVTIGGQDSKV--VG--AK-------GKSLY-----CVVPAKAYDGD 79 (430)
T ss_dssp CEEEEEECSEEC--TTCEEEEEEECCCSCGGGEEEEETTEEECE--EE--EC-------SSEEE-----EECCTTCTTCC
T ss_pred CEEEEEcCCCCC--CCCEEEEEEEcCCCCccceEEEECCEEEEE--EE--EC-------CCEEE-----EEeCCCCCCcc
Confidence 499999999875 567899999999988789999999944332 21 11 33444 4588777644
Q ss_pred -EEEEec
Q 004246 627 -FIEIED 632 (766)
Q Consensus 627 -FIEVE~ 632 (766)
-|.|+.
T Consensus 80 ~~v~~~~ 86 (430)
T 3tc9_A 80 IKLSILN 86 (430)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 455565
No 9
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=20.56 E-value=86 Score=35.42 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=29.0
Q ss_pred CCCceeeEeeeeeEecCCceEEEEEeeccCC
Q 004246 545 NNYSKILSVKPIAVPASERAQFFVKGINLGR 575 (766)
Q Consensus 545 ~~~p~I~~V~PlAv~ag~~~~~~v~G~NL~~ 575 (766)
...|+|..|.|-++.+|.+++++|-|.||..
T Consensus 273 ~~~~~~~av~P~~l~aG~~~~~~i~G~gL~g 303 (489)
T 1pby_A 273 DAAPQVLAVAPARLKIGEETQLRVAGTGLGS 303 (489)
T ss_dssp TCSSEEEEEESCEEETTCCEEEEEEEESCCS
T ss_pred CCCceEEEeChhhhcCCCceEEEEEeccccc
Confidence 5578999999999999999999999999996
No 10
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=18.03 E-value=4.4e+02 Score=23.74 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=52.0
Q ss_pred CCCceee--EeeeeeEecCCceEEEEEeeccCCCCceEEEEEc---CceeeeecccccccCccCccccccceEEeeccCC
Q 004246 545 NNYSKIL--SVKPIAVPASERAQFFVKGINLGRSATRLLCAVE---GKYMVQEATHELLDDVDGFKELDELQCVNFSCSI 619 (766)
Q Consensus 545 ~~~p~I~--~V~PlAv~ag~~~~~~v~G~NL~~p~tRlLcs~~---GkYL~~e~~~~~~~g~~~~~~~dei~~l~~~~~~ 619 (766)
+..+++. -+.+ ++.+|+++.|.|.-++-... .|-|... |..+..++. + ..|..+.+.|.
T Consensus 11 ask~~v~G~GL~~-~v~vg~~~~F~V~a~daG~~--~l~V~I~~p~g~~v~~~v~----d------~~dGty~V~Y~--- 74 (124)
T 2dmb_A 11 ASKCLATGPGIAS-TVKTGEEVGFVVDAKTAGKG--KVTCTVLTPDGTEAEADVI----E------NEDGTYDIFYT--- 74 (124)
T ss_dssp STTCEEESGGGSS-EEESSSEEEEEEECSSSCSC--CEEEEEECTTSCBCCCEEE----E------CTTSCEEEEEE---
T ss_pred ccceEEECCCccC-ccccCCcEEEEEEEecCCCC--cEEEEEECCCCCEEeeEEE----e------CCCCEEEEEEE---
Confidence 3344443 2444 45689999999998874322 3333332 322222211 1 13455677774
Q ss_pred CCCCCceEEEEecCC--CCCCceeeeecchh
Q 004246 620 PAVTGRGFIEIEDHG--FSSTFFPFIVAEED 648 (766)
Q Consensus 620 P~~~Gr~FIEVE~~G--lss~~fPviVa~~~ 648 (766)
|...|.-.|+|.=+| +.++.|.|-|.+.+
T Consensus 75 p~~~G~y~I~V~~~g~~I~gSPF~v~v~~~~ 105 (124)
T 2dmb_A 75 AAKPGTYVIYVRFGGVDIPNSPFTVMATDGE 105 (124)
T ss_dssp CSSCEEEEEEEEESSCBCTTCSEEEEEECCS
T ss_pred cCCCEEEEEEEEECCEECCCCCeEEEEEcCC
Confidence 445599999998655 77888888887643
Done!