BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004249
(765 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQ 218
+ WK + +QGD A+ +A++ DPN+ ++L + Y + G++Q+A + Y++
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 219 MVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255
++L P N +A Y K G + ++ EDY K
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAI---EDYQK 102
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 138 LGNTAKAMGCYWLAACYKQK-------DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP 190
LGN G Y A Y QK ++S W + +QGD A+ +A++ DP
Sbjct: 15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Query: 191 NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241
N+ K + + Y + G++Q+A + Y++ ++L P N +A + QK G
Sbjct: 75 NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%)
Query: 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231
QGD A+ +A++ DPN+ + ++L + Y + G++ A + Y++ ++L P N EA
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY 81
Query: 232 MGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
Y K G + +++ + L+ P A+
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 138 LGNTAKAMGCYWLAACYKQK-------DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP 190
LGN G Y A Y QK ++ W + +QGD A+ +A++ DP
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 191 NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241
N+ + ++L + Y + G++ A + Y++ ++L P N EA + QK G
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 189 DP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSV 247
DP N + ++L + Y + G++ A + Y++ ++L P N EA Y K G + ++
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 248 DILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE 287
+ + L+ P A+ L + + YD +++ +
Sbjct: 64 EYYQKALELDPNNAE--AWYNLGNAYYKQGDYDEAIEYYQ 101
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 21/82 (25%)
Query: 674 LRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSD 733
L L N+ EA YN+ AY+ G A YY+K L + P++ E W
Sbjct: 36 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------DPNNAEAW------ 80
Query: 734 LRREAAYNLHLIYKKSGAVDLA 755
YNL Y K G D A
Sbjct: 81 ------YNLGNAYYKQGDYDEA 96
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 21/77 (27%)
Query: 679 NSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREA 738
NS EA YN+ AY+ G A YY+K L + P++ E W
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------DPNNAEAW----------- 46
Query: 739 AYNLHLIYKKSGAVDLA 755
YNL Y K G D A
Sbjct: 47 -YNLGNAYYKQGDYDEA 62
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 610 GHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAF 669
G+ + + +A Y +A +L P N +G A K + + +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY----------KQGDYDEAIEY 65
Query: 670 LYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAM 710
L L N+ EA YN+ AY+ G A YY+K L +
Sbjct: 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY 154
LG+A +Y G Y+EAI + + L+ +++ LG + G+ +A+ Y A
Sbjct: 7 LGNA--YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64
Query: 155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD 214
+ + W + +QGD A+ +A++ DP + ++L + Y + G++ A +
Sbjct: 65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Query: 215 VYRQMVQLCP 224
Y++ ++L P
Sbjct: 125 YYQKALELDP 134
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231
QGD A+ +A++ DP + ++L + Y + G++ A + Y++ ++L P + EA
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73
Query: 232 MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE 287
Y K G + +++ + L+ P A+ L + + YD +++ +
Sbjct: 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGDYDEAIEYYQ 127
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 138 LGNTAKAMGCYWLAACYKQK-------DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP 190
LGN G Y A Y QK + W + +QGD A+ +A++ DP
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 191 NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDIL 250
+ ++L + Y + G++ A + Y++ ++L P + EA Y K G + +++
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 251 EDYLKGHP 258
+ L+ P
Sbjct: 127 QKALELDP 134
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 51/147 (34%), Gaps = 33/147 (22%)
Query: 610 GHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAF 669
G+ + + +A Y +A +L P + +G A K + + +
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY----------KQGDYDEAIEY 57
Query: 670 LYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKP 729
L L S EA YN+ AY+ G A YY+K L +
Sbjct: 58 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------- 98
Query: 730 GHSDLRR-EAAYNLHLIYKKSGAVDLA 755
D R EA YNL Y K G D A
Sbjct: 99 ---DPRSAEAWYNLGNAYYKQGDYDEA 122
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%)
Query: 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231
QGD A+ +A++ PN+ + ++L + Y + G++ A + Y++ ++L P N EA
Sbjct: 22 QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWY 81
Query: 232 MGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
Y K G + +++ + L+ +P A+
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 138 LGNTAKAMGCYWLAACYKQK-------DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP 190
LGN G Y A Y QK ++ W + +QGD A+ +A++ P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 191 NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241
N+ + ++L + Y + G++ A + Y++ ++L P N EA + QK G
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 189 DP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSV 247
DP N + ++L + Y + G++ A + Y++ ++L P N EA Y K G + ++
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 248 DILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE 287
+ + L+ +P A+ L + + YD +++ +
Sbjct: 64 EYYQKALELYPNNAE--AWYNLGNAYYKQGDYDEAIEYYQ 101
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 21/82 (25%)
Query: 674 LRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSD 733
L L N+ EA YN+ AY+ G A YY+K L +Y P++ E W
Sbjct: 36 LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY---------PNNAEAW------ 80
Query: 734 LRREAAYNLHLIYKKSGAVDLA 755
YNL Y K G D A
Sbjct: 81 ------YNLGNAYYKQGDYDEA 96
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 21/77 (27%)
Query: 679 NSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREA 738
NS EA YN+ AY+ G A YY+K L +Y P++ E W
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELY---------PNNAEAW----------- 46
Query: 739 AYNLHLIYKKSGAVDLA 755
YNL Y K G D A
Sbjct: 47 -YNLGNAYYKQGDYDEA 62
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 610 GHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAF 669
G+ + + +A Y +A +L P N +G A K + + +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYY----------KQGDYDEAIEY 65
Query: 670 LYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDC 715
L L N+ EA YN+ AY+ G A YY+K L +Y +
Sbjct: 66 YQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNA 111
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231
QGD A+ +A++ DPN+ + ++L + Y + G++ A + Y++ ++L P N EA +
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81
Query: 232 MGAKLYQKSG 241
QK G
Sbjct: 82 NLGNAKQKQG 91
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 189 DP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSV 247
DP N + ++L + Y + G++ A + Y++ ++L P N EA Y K G + ++
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 248 DILEDYLKGHPTEAD 262
+ + L+ P A+
Sbjct: 64 EYYQKALELDPNNAE 78
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 21/77 (27%)
Query: 679 NSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREA 738
NS EA YN+ AY+ G A YY+K L + P++ E W
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------DPNNAEAW----------- 46
Query: 739 AYNLHLIYKKSGAVDLA 755
YNL Y K G D A
Sbjct: 47 -YNLGNAYYKQGDYDEA 62
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 674 LRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAM 710
L L N+ EA YN+ AY+ G A YY+K L +
Sbjct: 36 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 96 GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILG----LVHDALG---NTAKAMGCY 148
D S A +EE + +E +L+E+L S G L +D LG + KA+ +
Sbjct: 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267
Query: 149 WLAACYKQKDSSLWKLIFPWLI--EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206
Y I+ LI ++ D+T + +A+K D N+ + +H + L
Sbjct: 268 PRVNSY----------IYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317
Query: 207 GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVI 266
N+ +A + + +L PENI A L + + + + + + P + V
Sbjct: 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE--VP 375
Query: 267 DLLASMLVQMNAYDRVLKHIELV 289
+ A +L N +D+ LK +L
Sbjct: 376 NFFAEILTDKNDFDKALKQYDLA 398
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEAL 230
EQG A+ A++ P+ +LA+ E G+ A D Y ++LCP + ++L
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308
Query: 231 KMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKH 285
A + ++ G IE +V + L+ P A LAS+L Q L H
Sbjct: 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEALMH 361
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%)
Query: 103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW 162
A G E A+ ++ +L LG + ALG +A CY A + + W
Sbjct: 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL 222
+ QG+ A+ +AV DPN +L ++ E F RA Y + + L
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
Query: 223 CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHP 258
P + A +Y + G I+ ++D ++ P
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
L E+G A C + A++ P +LA++ E GN + A +YR+ +++ PE
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340
Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
A A + Q+ G+++ ++ ++ ++ PT AD
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 98 ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY--WLAACYK 155
A ++Y G + AI I L+ P++Y L G+ A+A CY L C
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 156 QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV 215
DS + EQG+ A+ +A++ P +LAS+ + G Q A
Sbjct: 304 HADS--LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361
Query: 216 YRQMVQLCPENIEAL-KMGAKL 236
Y++ +++ P +A MG L
Sbjct: 362 YKEAIRISPTFADAYSNMGNTL 383
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 69/343 (20%), Positives = 134/343 (39%), Gaps = 37/343 (10%)
Query: 98 ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
+S+H+ R + + I+ L +Y LG V+ G +A+ Y A K
Sbjct: 40 SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
+ + L+ GD A+ A++ +P+ + ++ L +L LG + A Y
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159
Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277
+ ++ P A ++ G+I ++ E + P D + L ++L +
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN--LGNVLKEAR 217
Query: 278 AYDR-VLKHIELVDL-------------VYYSGKELLLALKIKAGICHIQLGNTDKAEIL 323
+DR V ++ + L VYY + LA+ +T + I
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI------------DTYRRAIE 265
Query: 324 LTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSL 383
L + + A ++ E + + + Y+TAL+ H D +L A
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-------CPTHADSLNNL--ANIKR 316
Query: 384 ALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAI 426
E+++ + KAL++ + A LAS+L + K +EA+
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 34/186 (18%)
Query: 102 YALGRYEEAISVLHEVIRLEEELPNSYH-------ILGLVHDALGN-------TAKAMGC 147
YALGRY+ A+++ ++ + P + + LGLV+ AL N T + +G
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75
Query: 148 YWL-----AACYKQ-KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201
Y + A Y+Q +D K G A+S L +A + +P L
Sbjct: 76 YMVLSEAYVALYRQAEDRERGK---------GYLEQALSVLKDAERVNPRYAPLHLQRGL 126
Query: 202 LYVELGNFQRAADVYRQMVQL--CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT 259
+Y LG +A +Q + L PE AL A+LY G+++ ++ L+ P
Sbjct: 127 VYALLGERDKAEASLKQALALEDTPEIRSAL---AELYLSMGRLDEALAQYAKALEQAPK 183
Query: 260 EADFGV 265
+ D V
Sbjct: 184 DLDLRV 189
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
Length = 354
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN---FQRAADVYRQMVQLCPENIEA 229
D TW L EAV+A N +K++L LY + N ++ +A++Y+Q+ Q+C ++I+A
Sbjct: 11 DETWQK--LKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKA 67
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN---FQRAADVYRQMVQLCPENIEA 229
D TW L EAV+A N +K++L LY + N ++ +A++Y+Q+ Q+C ++I+A
Sbjct: 27 DETWQK--LKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKA 83
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN---FQRAADVYRQMVQLCPENIEA 229
D TW L EAV+A N +K++L LY + N ++ +A++Y+Q+ Q+C ++I+A
Sbjct: 42 DETWQK--LKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKA 98
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI-- 227
++GD AM +EA+K +P D KL + A+ Y +L FQ A + +QL P I
Sbjct: 27 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86
Query: 228 --------EALKMGAK---LYQKSGQIESSV 247
EA+K K +YQK+ ++SS
Sbjct: 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117
>pdb|1ZBP|A Chain A, X-Ray Crystal Structure Of Protein Vpa1032 From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr44
Length = 273
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE 225
+ +G A+ L EA+KA P D L+ L G+F+RA + Q ++L PE
Sbjct: 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLXQSIKLFPE 63
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 88 CPEIRRMLGD-ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMG 146
CP L + A++ G EEA+ + + + + E ++ L V G +A+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 147 CYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206
Y A + + + L E D A+ C + A++ +P +LAS++ +
Sbjct: 65 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124
Query: 207 GNFQRAADVYRQMVQLCPENIEA 229
GN A YR ++L P+ +A
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDA 147
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%)
Query: 198 HLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGH 257
+LA++ E GN + A +YR+ +++ PE A A + Q+ G+++ ++ ++ ++
Sbjct: 14 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73
Query: 258 PTEAD 262
PT AD
Sbjct: 74 PTFAD 78
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%)
Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
L +QG A+ EA++ P ++ + E+ + Q A Y + +Q+ P +
Sbjct: 53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112
Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
A A +++ SG I ++ LK P D
Sbjct: 113 AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 58 FGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEV 117
GS +RS+ ++Y + + P +K + + A L+Y Y+ A +
Sbjct: 3 LGSMRRSKADVERYIASVQGSTPSPRQKSI-----KGFYFAKLYYEAKEYDLAKKYICTY 57
Query: 118 IRLEEELPNSYHILGLVHDALGNTAKAMGCY 148
I ++E P ++ LGL+++ NT KA+ CY
Sbjct: 58 INVQERDPKAHRFLGLLYELEENTDKAVECY 88
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHL-ASLYVELGNFQRAADVYRQMVQLCPEN- 226
LI QGD A+ L E ++ +P ++L + Y +LG++Q+A + Y+ ++L P++
Sbjct: 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69
Query: 227 -IEALKM 232
++A KM
Sbjct: 70 ALQARKM 76
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE 225
G+ A+ C SEA+K DP++ L + ++ Y + G++Q+A + + V L P+
Sbjct: 18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 58 FGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGD--ASLHYALGRYEEAISVLH 115
GS +RS+ ++Y + + P P + M G A L+Y Y+ A +
Sbjct: 3 LGSMRRSKADVERYIASVQGSTPS-------PRQKSMKGFYFAKLYYEAKEYDLAKKYIC 55
Query: 116 EVIRLEEELPNSYHILGLVHDALGNTAKAMGCY 148
I ++E P ++ LGL+++ NT KA+ CY
Sbjct: 56 TYINVQERDPKAHRFLGLLYELEENTDKAVECY 88
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%)
Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
L+ G A+S AV DP+++ + A++++ +G + A +++QL +
Sbjct: 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95
Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTE 260
A L K G+++ + D + LK +P+E
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 147 CYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206
C W D+ L +L I++G+ A+S L A K ++ + + +++LY +L
Sbjct: 173 CVW--------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224
Query: 207 GNFQRAADVYRQMVQL------CPENIEALKMGAKLYQ------KSGQIESSVDILEDYL 254
G+ + + R+ ++L C + + +K KL + + G+ + E +
Sbjct: 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284
Query: 255 KGHPTEADFGV 265
K P+ A++ V
Sbjct: 285 KTEPSIAEYTV 295
>pdb|3ULQ|A Chain A, Crystal Structure Of The Anti-Activator Rapf Complexed
With The Response Regulator Coma Dna Binding Domain
Length = 383
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 23/138 (16%)
Query: 105 GRYEEAISVLHEVIRLEEE------LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD 158
+YE+AI I + EE LP +Y ++ +H LG KA + Y QK
Sbjct: 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297
Query: 159 SSLWKL----IFPWLIEQGDTTWAMSCL-----SEAVKADPNDFKLKFHLASLYVELGNF 209
+ L L G A+ S+ + AD DF + +A Y E NF
Sbjct: 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID--VAKYYHERKNF 355
Query: 210 QRAADVY------RQMVQ 221
Q+A+ + RQ++Q
Sbjct: 356 QKASAYFLKVEQVRQLIQ 373
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%)
Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
L+ G A+S AV DP+++ + A++++ G + A +++QL +
Sbjct: 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTA 95
Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTE 260
A L K G+++ + D + LK +P+E
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229
+++GD A+ AV+ DP + +L + E A R+ ++L P+N A
Sbjct: 12 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 71
Query: 230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289
L A + + +IL D+L+ P A + + R+L + L
Sbjct: 72 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL-LS 130
Query: 290 DLVYYSGKELLLA 302
D ++ KEL LA
Sbjct: 131 DSLFLEVKELFLA 143
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 22/155 (14%)
Query: 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSE 184
P+ LG++ + G KA+ C+ A + D LW + L + A++
Sbjct: 154 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 213
Query: 185 AVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244
A++ P + +++L + LG + A + + +EAL M K G+
Sbjct: 214 ALELQPGYIRSRYNLGISCINLGAHREAVEHF----------LEALNMQRKSRGPRGE-- 261
Query: 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY 279
G +E + + L SML Q +AY
Sbjct: 262 ----------GGAMSENIWSTLRLALSMLGQSDAY 286
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229
+++GD A+ AV+ DP + +L + E A R+ ++L P+N A
Sbjct: 26 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 85
Query: 230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289
L A + + +IL D+L+ P A + + R+L + L
Sbjct: 86 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL-LS 144
Query: 290 DLVYYSGKELLLA 302
D ++ KEL LA
Sbjct: 145 DSLFLEVKELFLA 157
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 22/155 (14%)
Query: 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSE 184
P+ LG++ + G KA+ C+ A + D LW + L + A++
Sbjct: 168 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 227
Query: 185 AVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244
A++ P + +++L + LG + A + + +EAL M K G+
Sbjct: 228 ALELQPGYIRSRYNLGISCINLGAHREAVEHF----------LEALNMQRKSRGPRGE-- 275
Query: 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY 279
G +E + + L SML Q +AY
Sbjct: 276 ----------GGAMSENIWSTLRLALSMLGQSDAY 300
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229
+++GD A+ AV+ DP + +L + E A R+ ++L P+N A
Sbjct: 35 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 94
Query: 230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289
L A + + +IL D+L+ P A + + R+L + L
Sbjct: 95 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL-LS 153
Query: 290 DLVYYSGKELLLA 302
D ++ KEL LA
Sbjct: 154 DSLFLEVKELFLA 166
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 22/155 (14%)
Query: 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSE 184
P+ LG++ + G KA+ C+ A + D LW + L + A++
Sbjct: 177 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 236
Query: 185 AVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244
A++ P + +++L + LG + A + + +EAL M K G+
Sbjct: 237 ALELQPGYIRSRYNLGISCINLGAHREAVEHF----------LEALNMQRKSRGPRGE-- 284
Query: 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY 279
G +E + + L SML Q +AY
Sbjct: 285 ----------GGAMSENIWSTLRLALSMLGQSDAY 309
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229
+++GD A+ AV+ DP + +L + E A R+ ++L P+N A
Sbjct: 75 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 134
Query: 230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289
L A + + +IL D+L+ P A + + R+L + L
Sbjct: 135 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL-LS 193
Query: 290 DLVYYSGKELLLA 302
D ++ KEL LA
Sbjct: 194 DSLFLEVKELFLA 206
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 22/155 (14%)
Query: 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSE 184
P+ LG++ + G KA+ C+ A + D LW + L + A++
Sbjct: 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276
Query: 185 AVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244
A++ P + +++L + LG + A + + +EAL M K G+
Sbjct: 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHF----------LEALNMQRKSRGPRGE-- 324
Query: 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY 279
G +E + + L SML Q +AY
Sbjct: 325 ----------GGAMSENIWSTLRLALSMLGQSDAY 349
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 98 ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY 148
S ++ + + AI L I L ++Y+ LGLV+D++G KA+ Y
Sbjct: 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAY 130
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM 232
G + A+ L + AD D ++ HL YV+ G R ++ + + P+NI+ +
Sbjct: 22 GRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVATV 81
Query: 233 GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL 288
Y + + + +V +L + +P +F V L L + +D + ++
Sbjct: 82 LGLTYVQVQKYDLAVPLLVKVAEANPV--NFNVRFRLGVALDNLGRFDEAIDSFKI 135
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 2/148 (1%)
Query: 101 HYALGRYEEAISVLHEVIRLEE-ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159
H GRY EA+ +L +V + ++ + H LG+ + G + + +
Sbjct: 18 HAKAGRYSEAVVMLEQVYDADAFDVEVALH-LGIAYVKTGAVDRGTELLERSIADAPDNI 76
Query: 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQM 219
+ ++ ++ A+ L + +A+P +F ++F L LG F A D ++
Sbjct: 77 KVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIA 136
Query: 220 VQLCPENIEALKMGAKLYQKSGQIESSV 247
+ L P + + A Y++ G E ++
Sbjct: 137 LGLRPNEGKVHRAIAYSYEQMGSHEEAL 164
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 22/155 (14%)
Query: 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSE 184
P+ LG++ + G KA+ C+ A + D LW + L + A++
Sbjct: 177 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 236
Query: 185 AVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244
A++ P + +++L + LG + A + + +EAL M K G+
Sbjct: 237 ALELQPGYIRSRYNLGISCINLGAHREAVEHF----------LEALNMQRKSRGPRGE-- 284
Query: 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY 279
G +E + + L SML Q +AY
Sbjct: 285 ----------GGAMSENIWSTLRLALSMLGQSDAY 309
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229
+++GD A+ AV+ DP + +L + E A R+ ++L P+N A
Sbjct: 35 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 94
Query: 230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289
L A + + + L D+L+ P A + + R+L + L
Sbjct: 95 LMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL-LS 153
Query: 290 DLVYYSGKELLLA 302
D ++ KEL LA
Sbjct: 154 DSLFLEVKELFLA 166
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP 224
QGD A+ +A++ DP + ++L + Y + G++ A + Y++ ++L P
Sbjct: 16 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229
++GD AM +EAVK DP + L + A+ +L FQRA D ++L + I+
Sbjct: 24 FKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83
Query: 230 LKMGAKLYQKSGQIESSVDILEDYLKGHPT--EADFGVIDLL 269
A + + ED L+ P+ EA GV + L
Sbjct: 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125
>pdb|3QKY|A Chain A, Crystal Structure Of Rhodothermus Marinus Bamd
Length = 261
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 657 QNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCI 716
Q K+ + ++ R E + +A + +ARAY+ LAAS YE+ + +YQ D
Sbjct: 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87
Query: 717 IP 718
+P
Sbjct: 88 VP 89
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229
+++GD + + A+ DP D + L E N Q A ++ ++L P N++A
Sbjct: 76 LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135
Query: 230 LKMGAKLYQKSGQIESSVDILEDYLKGHP 258
L A Y + + + + L++++K +P
Sbjct: 136 LMALAVSYTNTSHQQDACEALKNWIKQNP 164
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 176 TWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE 225
+ A++ E V+ DP+ +HL LY L A D Y Q +++ E
Sbjct: 23 SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 72
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 176 TWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE 225
+ A++ E V+ DP+ +HL LY L A D Y Q +++ E
Sbjct: 24 SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY 237
A+ L + +A+P +F ++F L LG F A D ++ + L P + + A Y
Sbjct: 95 AVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154
Query: 238 QKSGQIESSV 247
++ G+ E ++
Sbjct: 155 EQMGRHEEAL 164
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM 232
G + A+ L + AD D + HL YV+ G R ++ + + P+N++ +
Sbjct: 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81
Query: 233 GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL 288
Y + + + +V +L + +P +F V L L + +D + ++
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPI--NFNVRFRLGVALKNLGRFDEAIDSFKI 135
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 189 DPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
DPN K K +LAS Y++ G F++A +Y++++
Sbjct: 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY 237
A+ L + +A+P +F ++F L LG F A D ++ + L P + + A Y
Sbjct: 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154
Query: 238 QKSGQIESSV 247
++ G+ E ++
Sbjct: 155 EQMGRHEEAL 164
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM 232
G + A+ L + AD D + HL YV+ G R ++ + + P+N++ +
Sbjct: 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81
Query: 233 GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL 288
Y + + + +V +L + +P +F V L L + +D + ++
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPI--NFNVRFRLGVALDNLGRFDEAIDSFKI 135
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 58 FGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEV 117
GS +RS+ ++Y + + P +K + A L+ Y+ A +
Sbjct: 3 LGSXRRSKADVERYIASVQGSTPSPRQKSX-----KGFYFAKLYXEAKEYDLAKKYICTY 57
Query: 118 IRLEEELPNSYHILGLVHDALGNTAKAMGCY 148
I ++E P ++ LGL+++ NT KA+ CY
Sbjct: 58 INVQERDPKAHRFLGLLYELEENTDKAVECY 88
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 43/92 (46%)
Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
L+ G A+S AV DP+++ + A++++ G + A +++ L +
Sbjct: 13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTA 72
Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTE 260
A L K G+++ + D + LK +P+E
Sbjct: 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY 237
A+ L + +A+P +F ++F L LG F A D ++ + L P + + A Y
Sbjct: 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154
Query: 238 QKSGQIESSV 247
++ G+ E ++
Sbjct: 155 EQMGRHEEAL 164
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM 232
G + A+ L + AD D + HL YV+ G R ++ + + P+N++ +
Sbjct: 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81
Query: 233 GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL 288
Y + + + +V +L + +P +F V L L + +D + ++
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPI--NFNVRFRLGVALDNLGRFDEAIDSFKI 135
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 189 DPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
DPN K K +LAS Y++ G +Q A +Y++++
Sbjct: 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 189 DPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
DPN K K +LAS Y++ G +Q A +Y++++
Sbjct: 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin
pdb|1BHD|B Chain B, Second Calponin Homology Domain From Utrophin
Length = 118
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 553 WFDGVRFMVKLHPHR--LTTWNRYYKL--VSRFEKIFSK 587
W DG+ F LH H+ L +W++ K+ + R E FSK
Sbjct: 36 WTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSK 74
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 98 ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMG 146
A+ Y G YE AIS L++ + E+ Y ++ +GN +G
Sbjct: 45 AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG 93
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Query: 103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW 162
A Y E ++LH + + + LG++++ N A A + D+ LW
Sbjct: 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW 209
Query: 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD-----VYR 217
+ L A+ + A+ +P ++ +++A Y + + AA +Y
Sbjct: 210 NKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269
Query: 218 QMVQLCP 224
Q+ P
Sbjct: 270 QVGGTTP 276
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Query: 103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW 162
A Y E ++LH + + + LG++++ N A A + D+ LW
Sbjct: 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW 209
Query: 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD-----VYR 217
+ L A+ + A+ +P ++ +++A Y + + AA +Y
Sbjct: 210 NKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269
Query: 218 QMVQLCP 224
Q+ P
Sbjct: 270 QVGGTTP 276
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG 233
D A+ +A + DP + + A++Y E G++ + ++ + +++ EN E +
Sbjct: 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78
Query: 234 AKLYQKSG 241
AK Y + G
Sbjct: 79 AKAYARIG 86
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 182 LSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA-LKMGAKLYQKS 240
+AV +P +H +Y L +++ A + +++ L PEN+ +++ LY++
Sbjct: 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358
Query: 241 GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289
ES E LK PT + V A +L +D +K ++
Sbjct: 359 KFTESEAFFNETKLK-FPTLPE--VPTFFAEILTDRGDFDTAIKQYDIA 404
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG 233
D A+ +A + DP + + A++Y E G++ + ++ + +++ EN E +
Sbjct: 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78
Query: 234 AKLYQKSG 241
AK Y + G
Sbjct: 79 AKAYARIG 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,539,975
Number of Sequences: 62578
Number of extensions: 925932
Number of successful extensions: 2404
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2227
Number of HSP's gapped (non-prelim): 161
length of query: 765
length of database: 14,973,337
effective HSP length: 106
effective length of query: 659
effective length of database: 8,340,069
effective search space: 5496105471
effective search space used: 5496105471
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)