Query 004249
Match_columns 765
No_of_seqs 1250 out of 4826
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 20:09:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2076 RNA polymerase III tra 100.0 2.7E-67 5.9E-72 536.5 67.7 677 75-765 123-895 (895)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 6.2E-51 1.3E-55 480.0 69.3 639 50-764 229-899 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-49 6.7E-54 465.5 73.0 646 52-764 94-764 (899)
4 PRK11447 cellulose synthase su 100.0 3.9E-45 8.3E-50 427.9 67.1 625 90-764 27-739 (1157)
5 KOG4626 O-linked N-acetylgluco 100.0 3.3E-47 7.1E-52 371.6 34.4 453 94-581 51-503 (966)
6 KOG4626 O-linked N-acetylgluco 100.0 1.6E-44 3.5E-49 352.7 33.9 434 54-526 54-487 (966)
7 PRK11447 cellulose synthase su 100.0 2.2E-40 4.7E-45 388.0 64.5 583 92-710 63-740 (1157)
8 KOG2002 TPR-containing nuclear 100.0 1.9E-40 4.2E-45 342.0 53.0 607 106-763 109-743 (1018)
9 KOG2002 TPR-containing nuclear 100.0 2.1E-39 4.4E-44 334.5 52.7 567 87-695 160-764 (1018)
10 PRK09782 bacteriophage N4 rece 100.0 1.2E-37 2.5E-42 346.7 63.9 596 90-764 43-705 (987)
11 PRK09782 bacteriophage N4 rece 100.0 5.3E-35 1.2E-39 325.5 58.7 621 54-764 50-739 (987)
12 TIGR00990 3a0801s09 mitochondr 100.0 3.3E-34 7E-39 315.9 50.9 440 92-569 128-577 (615)
13 TIGR00990 3a0801s09 mitochondr 100.0 3.6E-34 7.7E-39 315.6 49.6 444 125-638 127-577 (615)
14 PRK15174 Vi polysaccharide exp 100.0 1.2E-29 2.6E-34 277.9 45.3 337 94-439 45-385 (656)
15 PRK10049 pgaA outer membrane p 100.0 8.6E-30 1.9E-34 285.4 44.1 436 84-572 10-465 (765)
16 PRK10049 pgaA outer membrane p 100.0 1.9E-29 4.1E-34 282.7 45.4 370 91-480 49-455 (765)
17 PLN03077 Protein ECB2; Provisi 100.0 8.8E-28 1.9E-32 275.8 58.2 620 50-761 53-716 (857)
18 PRK15174 Vi polysaccharide exp 100.0 5.3E-29 1.1E-33 272.8 44.9 385 99-525 13-404 (656)
19 KOG0495 HAT repeat protein [RN 100.0 4.8E-25 1E-29 218.3 56.7 554 105-713 265-883 (913)
20 PRK14574 hmsH outer membrane p 100.0 1E-26 2.2E-31 254.1 47.5 461 90-572 33-522 (822)
21 KOG0547 Translocase of outer m 100.0 2.9E-27 6.2E-32 226.6 34.4 413 91-525 115-567 (606)
22 KOG0547 Translocase of outer m 100.0 2.3E-27 4.9E-32 227.3 33.1 409 126-564 116-567 (606)
23 KOG2076 RNA polymerase III tra 100.0 5.9E-25 1.3E-29 226.8 52.7 607 126-765 140-849 (895)
24 PLN03077 Protein ECB2; Provisi 100.0 5E-25 1.1E-29 253.1 56.6 584 95-763 55-684 (857)
25 KOG2003 TPR repeat-containing 100.0 6.7E-26 1.5E-30 214.8 31.7 501 48-584 147-710 (840)
26 KOG0495 HAT repeat protein [RN 100.0 5.6E-23 1.2E-27 203.8 52.1 548 138-764 264-879 (913)
27 KOG1126 DNA-binding cell divis 100.0 2.2E-26 4.8E-31 230.3 25.8 309 90-407 318-626 (638)
28 PLN03218 maturation of RBCL 1; 100.0 1.7E-22 3.7E-27 227.5 58.5 403 99-526 378-785 (1060)
29 PRK14574 hmsH outer membrane p 99.9 1.6E-23 3.5E-28 229.2 47.0 478 118-640 27-521 (822)
30 PLN03081 pentatricopeptide (PP 99.9 8.2E-24 1.8E-28 237.1 44.3 446 98-583 94-543 (697)
31 PLN03081 pentatricopeptide (PP 99.9 3E-23 6.6E-28 232.5 48.5 466 126-632 88-557 (697)
32 KOG1155 Anaphase-promoting com 99.9 2.9E-23 6.3E-28 198.1 37.0 372 123-524 162-536 (559)
33 PLN03218 maturation of RBCL 1; 99.9 1.1E-21 2.5E-26 220.9 56.1 366 99-482 414-784 (1060)
34 PRK11788 tetratricopeptide rep 99.9 1.4E-23 3E-28 220.5 36.0 275 88-372 32-316 (389)
35 KOG1173 Anaphase-promoting com 99.9 6.4E-23 1.4E-27 201.0 37.2 451 99-578 24-533 (611)
36 PRK11788 tetratricopeptide rep 99.9 1.4E-23 3.1E-28 220.4 35.5 304 124-434 34-346 (389)
37 KOG1127 TPR repeat-containing 99.9 6E-23 1.3E-27 212.8 38.4 436 103-557 470-1030(1238)
38 KOG1126 DNA-binding cell divis 99.9 1.8E-24 4E-29 216.7 25.4 304 127-439 319-624 (638)
39 KOG1155 Anaphase-promoting com 99.9 1.8E-22 3.9E-27 192.8 36.2 369 90-479 163-534 (559)
40 KOG2003 TPR repeat-containing 99.9 6.4E-23 1.4E-27 194.7 32.9 509 90-641 148-698 (840)
41 KOG0548 Molecular co-chaperone 99.9 6.5E-23 1.4E-27 200.4 33.3 431 93-567 4-492 (539)
42 KOG1127 TPR repeat-containing 99.9 1.3E-21 2.8E-26 203.1 42.0 584 94-763 402-1102(1238)
43 KOG1156 N-terminal acetyltrans 99.9 1.4E-19 2.9E-24 180.7 53.7 578 87-714 3-692 (700)
44 KOG1173 Anaphase-promoting com 99.9 1.1E-21 2.4E-26 192.5 37.4 474 133-649 24-535 (611)
45 KOG0624 dsRNA-activated protei 99.9 6.5E-22 1.4E-26 181.5 29.8 316 88-412 35-381 (504)
46 KOG4162 Predicted calmodulin-b 99.9 6.5E-20 1.4E-24 186.6 46.5 512 167-714 182-787 (799)
47 KOG0548 Molecular co-chaperone 99.9 4.9E-21 1.1E-25 187.4 33.3 405 129-580 6-472 (539)
48 KOG0624 dsRNA-activated protei 99.9 1.5E-20 3.3E-25 172.6 30.4 325 157-526 36-372 (504)
49 KOG4162 Predicted calmodulin-b 99.9 1.4E-18 3E-23 177.1 41.7 428 158-640 322-791 (799)
50 KOG1915 Cell cycle control pro 99.9 4.8E-17 1E-21 156.2 49.6 457 90-579 72-551 (677)
51 KOG1174 Anaphase-promoting com 99.9 2.1E-18 4.6E-23 162.6 37.7 449 90-578 42-515 (564)
52 PF13429 TPR_15: Tetratricopep 99.9 4.9E-22 1.1E-26 197.0 14.1 263 163-434 12-276 (280)
53 KOG1174 Anaphase-promoting com 99.9 5.6E-18 1.2E-22 159.8 38.5 413 189-639 93-507 (564)
54 PF13429 TPR_15: Tetratricopep 99.9 8.5E-22 1.8E-26 195.3 12.8 260 96-400 13-276 (280)
55 TIGR00540 hemY_coli hemY prote 99.9 9.7E-19 2.1E-23 182.3 36.1 299 93-399 86-397 (409)
56 PRK12370 invasion protein regu 99.9 1.4E-19 3E-24 195.8 30.5 271 120-402 251-536 (553)
57 TIGR00540 hemY_coli hemY prote 99.9 5.6E-19 1.2E-23 184.1 32.0 305 126-434 85-398 (409)
58 KOG1156 N-terminal acetyltrans 99.9 9E-18 1.9E-22 167.8 38.6 273 126-404 8-286 (700)
59 PRK12370 invasion protein regu 99.9 7.4E-19 1.6E-23 190.1 32.0 251 173-434 275-534 (553)
60 KOG1129 TPR repeat-containing 99.9 5.8E-20 1.3E-24 167.7 19.0 274 133-415 187-472 (478)
61 KOG1129 TPR repeat-containing 99.8 1.4E-19 3.1E-24 165.1 20.4 280 92-380 182-471 (478)
62 PRK10747 putative protoheme IX 99.8 8E-18 1.7E-22 174.3 35.7 293 94-400 87-389 (398)
63 KOG1915 Cell cycle control pro 99.8 9.2E-16 2E-20 147.5 46.4 475 112-645 60-548 (677)
64 KOG3785 Uncharacterized conser 99.8 9.7E-17 2.1E-21 148.4 37.0 401 100-527 31-493 (557)
65 PRK11189 lipoprotein NlpI; Pro 99.8 4.1E-18 8.9E-23 168.7 28.3 151 105-256 40-194 (296)
66 PRK10747 putative protoheme IX 99.8 1.3E-17 2.7E-22 172.8 32.5 301 126-435 85-390 (398)
67 KOG1125 TPR repeat-containing 99.8 6.5E-19 1.4E-23 174.2 19.5 256 94-355 288-561 (579)
68 COG3063 PilF Tfp pilus assembl 99.8 1.5E-17 3.2E-22 145.6 24.6 208 194-408 36-243 (250)
69 COG3063 PilF Tfp pilus assembl 99.8 2.2E-17 4.7E-22 144.6 24.3 203 90-294 34-238 (250)
70 KOG2376 Signal recognition par 99.8 1.9E-15 4.1E-20 149.8 40.7 470 92-583 13-507 (652)
71 PRK11189 lipoprotein NlpI; Pro 99.8 2.4E-17 5.2E-22 163.2 27.7 241 137-418 38-283 (296)
72 TIGR02521 type_IV_pilW type IV 99.8 4E-17 8.6E-22 158.6 27.4 203 88-292 28-232 (234)
73 KOG1125 TPR repeat-containing 99.8 9.2E-18 2E-22 166.1 21.8 262 163-429 289-565 (579)
74 COG2956 Predicted N-acetylgluc 99.8 1.4E-15 3E-20 139.5 31.4 267 95-371 39-315 (389)
75 KOG0550 Molecular chaperone (D 99.8 1.9E-17 4.1E-22 156.6 19.7 295 90-415 48-363 (486)
76 KOG2376 Signal recognition par 99.8 1.5E-14 3.2E-19 143.6 39.7 457 127-648 14-503 (652)
77 TIGR02521 type_IV_pilW type IV 99.8 1.7E-16 3.8E-21 154.1 25.8 197 125-327 31-229 (234)
78 PLN02789 farnesyltranstransfer 99.7 1.3E-15 2.7E-20 149.8 28.3 207 101-313 47-267 (320)
79 COG2956 Predicted N-acetylgluc 99.7 2.4E-15 5.2E-20 138.0 27.7 267 130-404 40-314 (389)
80 KOG3785 Uncharacterized conser 99.7 1.1E-14 2.5E-19 134.9 31.8 423 136-636 33-494 (557)
81 KOG2047 mRNA splicing factor [ 99.7 2.9E-12 6.4E-17 128.4 50.3 523 107-652 84-671 (835)
82 PF12569 NARP1: NMDA receptor- 99.7 5.3E-14 1.2E-18 146.3 39.2 140 336-480 194-333 (517)
83 cd05804 StaR_like StaR_like; a 99.7 5.1E-15 1.1E-19 153.3 31.9 197 93-290 8-213 (355)
84 KOG2047 mRNA splicing factor [ 99.7 1.6E-12 3.4E-17 130.3 45.5 506 98-634 109-689 (835)
85 cd05804 StaR_like StaR_like; a 99.7 2.3E-14 5.1E-19 148.4 34.8 314 121-437 2-338 (355)
86 KOG0550 Molecular chaperone (D 99.7 6.7E-16 1.4E-20 146.3 20.3 286 128-438 52-353 (486)
87 PLN02789 farnesyltranstransfer 99.7 3.8E-15 8.3E-20 146.4 26.3 220 104-347 33-266 (320)
88 KOG1840 Kinesin light chain [C 99.7 3.1E-15 6.8E-20 153.1 24.4 246 120-365 194-479 (508)
89 KOG1840 Kinesin light chain [C 99.7 3.4E-15 7.4E-20 152.9 24.1 251 151-401 191-479 (508)
90 PF12569 NARP1: NMDA receptor- 99.7 7.4E-13 1.6E-17 137.8 41.0 313 159-526 4-336 (517)
91 KOG4340 Uncharacterized conser 99.7 4.8E-13 1E-17 121.4 30.0 427 100-567 19-447 (459)
92 TIGR03302 OM_YfiO outer membra 99.6 2.1E-14 4.5E-19 138.7 21.0 187 89-292 31-232 (235)
93 COG3071 HemY Uncharacterized e 99.6 6.5E-12 1.4E-16 119.7 35.0 296 92-400 85-389 (400)
94 TIGR03302 OM_YfiO outer membra 99.6 6.7E-14 1.4E-18 135.2 21.1 190 122-331 30-233 (235)
95 PRK15359 type III secretion sy 99.6 2E-14 4.4E-19 124.9 15.1 125 112-239 14-138 (144)
96 KOG4340 Uncharacterized conser 99.6 2.5E-12 5.5E-17 116.8 28.2 384 90-526 43-445 (459)
97 KOG1130 Predicted G-alpha GTPa 99.6 1.1E-13 2.3E-18 131.1 17.8 321 90-424 16-373 (639)
98 PRK15359 type III secretion sy 99.6 9.1E-14 2E-18 120.9 15.2 127 145-276 13-139 (144)
99 COG3071 HemY Uncharacterized e 99.6 2.2E-11 4.7E-16 116.2 32.1 297 129-433 88-388 (400)
100 PRK10370 formate-dependent nit 99.5 6.9E-13 1.5E-17 121.8 20.2 156 96-262 21-179 (198)
101 COG5010 TadD Flp pilus assembl 99.5 2.5E-12 5.3E-17 116.1 20.2 182 106-290 48-229 (257)
102 PRK10370 formate-dependent nit 99.5 7.8E-13 1.7E-17 121.5 17.3 126 104-229 52-180 (198)
103 PRK14720 transcript cleavage f 99.5 5.1E-12 1.1E-16 137.3 25.3 149 89-255 29-177 (906)
104 PRK04841 transcriptional regul 99.5 3.8E-10 8.2E-15 132.5 42.0 388 126-525 342-761 (903)
105 COG5010 TadD Flp pilus assembl 99.5 7.6E-12 1.6E-16 113.0 21.0 181 141-328 49-229 (257)
106 KOG3060 Uncharacterized conser 99.5 1.8E-11 3.9E-16 109.2 22.1 175 88-262 48-226 (289)
107 PRK04841 transcriptional regul 99.5 1.4E-10 3.1E-15 135.9 36.4 379 48-438 341-763 (903)
108 PRK14720 transcript cleavage f 99.5 1.3E-11 2.8E-16 134.2 24.1 242 120-383 26-268 (906)
109 PRK15179 Vi polysaccharide bio 99.4 1E-11 2.3E-16 134.4 21.9 156 106-261 67-222 (694)
110 KOG3060 Uncharacterized conser 99.4 9.3E-11 2E-15 104.7 23.4 198 105-308 26-232 (289)
111 TIGR02552 LcrH_SycD type III s 99.4 4.7E-12 1E-16 110.3 14.7 115 113-227 5-119 (135)
112 TIGR02552 LcrH_SycD type III s 99.4 1.2E-11 2.6E-16 107.7 16.5 117 146-262 4-120 (135)
113 KOG1128 Uncharacterized conser 99.4 2.3E-10 4.9E-15 117.3 26.2 292 124-437 397-703 (777)
114 PRK15179 Vi polysaccharide bio 99.4 5.4E-11 1.2E-15 129.0 23.1 150 144-295 71-220 (694)
115 KOG0553 TPR repeat-containing 99.4 8.2E-12 1.8E-16 115.0 13.8 120 91-210 81-200 (304)
116 KOG1128 Uncharacterized conser 99.4 2.1E-11 4.5E-16 124.8 17.8 224 85-329 392-615 (777)
117 KOG1130 Predicted G-alpha GTPa 99.4 6.9E-12 1.5E-16 119.1 12.1 290 130-435 22-344 (639)
118 COG4783 Putative Zn-dependent 99.3 5.1E-10 1.1E-14 110.1 24.0 153 122-293 303-455 (484)
119 PRK15363 pathogenicity island 99.3 6.9E-11 1.5E-15 99.8 15.6 102 122-223 32-133 (157)
120 PRK15363 pathogenicity island 99.3 6E-11 1.3E-15 100.1 14.1 102 88-189 32-133 (157)
121 PF04733 Coatomer_E: Coatomer 99.3 2.8E-11 6.1E-16 117.7 13.8 163 230-406 105-270 (290)
122 PF04733 Coatomer_E: Coatomer 99.3 2.6E-11 5.7E-16 118.0 13.5 256 168-439 10-269 (290)
123 KOG0553 TPR repeat-containing 99.3 4.2E-11 9.1E-16 110.3 13.3 119 126-244 82-200 (304)
124 KOG3617 WD40 and TPR repeat-co 99.3 1.6E-08 3.4E-13 104.8 32.9 172 96-292 805-996 (1416)
125 COG4783 Putative Zn-dependent 99.2 2.9E-09 6.3E-14 104.9 24.0 127 156-284 303-429 (484)
126 PRK10866 outer membrane biogen 99.2 2E-09 4.3E-14 102.3 22.0 183 90-289 31-238 (243)
127 PLN03088 SGT1, suppressor of 99.2 2.1E-10 4.5E-15 116.4 15.9 113 94-206 5-117 (356)
128 KOG2053 Mitochondrial inherita 99.2 2E-06 4.3E-11 91.1 43.5 227 101-331 19-256 (932)
129 PF13525 YfiO: Outer membrane 99.2 1.5E-09 3.3E-14 100.8 18.8 175 90-281 4-196 (203)
130 KOG3617 WD40 and TPR repeat-co 99.2 6.1E-07 1.3E-11 93.4 37.6 369 137-562 740-1173(1416)
131 PRK10866 outer membrane biogen 99.2 7.8E-09 1.7E-13 98.3 21.8 185 124-328 31-239 (243)
132 PLN03088 SGT1, suppressor of 99.1 1E-09 2.2E-14 111.4 16.1 113 128-240 5-117 (356)
133 KOG2053 Mitochondrial inherita 99.1 9.3E-06 2E-10 86.3 43.8 239 136-405 20-259 (932)
134 COG4235 Cytochrome c biogenesi 99.1 2.4E-09 5.2E-14 99.9 15.8 123 141-263 138-263 (287)
135 KOG3616 Selective LIM binding 99.1 2.8E-05 6E-10 80.4 44.3 135 132-286 713-847 (1636)
136 COG4235 Cytochrome c biogenesi 99.1 7.8E-09 1.7E-13 96.6 17.2 120 107-226 138-260 (287)
137 KOG2300 Uncharacterized conser 99.1 2.1E-05 4.6E-10 77.6 40.7 448 89-549 5-540 (629)
138 PF13525 YfiO: Outer membrane 99.1 6.3E-08 1.4E-12 90.1 23.0 175 193-391 5-197 (203)
139 PF09976 TPR_21: Tetratricopep 99.1 1E-08 2.2E-13 89.9 16.6 129 91-220 11-145 (145)
140 TIGR02795 tol_pal_ybgF tol-pal 99.0 5.6E-09 1.2E-13 88.6 13.9 96 96-191 7-108 (119)
141 TIGR02795 tol_pal_ybgF tol-pal 99.0 4.6E-09 9.9E-14 89.2 13.1 107 125-231 2-114 (119)
142 PRK10153 DNA-binding transcrip 99.0 1.3E-08 2.8E-13 107.4 19.1 145 118-263 330-489 (517)
143 KOG1941 Acetylcholine receptor 99.0 1.3E-07 2.8E-12 89.2 22.8 308 94-431 9-356 (518)
144 KOG1941 Acetylcholine receptor 99.0 1.2E-07 2.6E-12 89.3 22.5 243 126-401 84-360 (518)
145 KOG1070 rRNA processing protei 99.0 1.7E-07 3.6E-12 103.2 25.7 240 139-384 1438-1682(1710)
146 COG4785 NlpI Lipoprotein NlpI, 99.0 3.1E-08 6.7E-13 86.4 16.1 127 125-252 65-191 (297)
147 PRK11906 transcriptional regul 99.0 5.9E-08 1.3E-12 96.6 19.6 120 143-262 276-407 (458)
148 CHL00033 ycf3 photosystem I as 99.0 1.4E-08 3.1E-13 91.7 14.4 105 103-207 11-120 (168)
149 PRK11906 transcriptional regul 99.0 4.5E-08 9.8E-13 97.4 18.5 159 163-327 259-433 (458)
150 PRK02603 photosystem I assembl 99.0 3.6E-08 7.7E-13 89.4 16.6 93 125-217 35-130 (172)
151 cd00189 TPR Tetratricopeptide 98.9 1.1E-08 2.4E-13 83.0 11.7 94 129-222 4-97 (100)
152 PF12895 Apc3: Anaphase-promot 98.9 2.8E-09 6.1E-14 83.2 7.5 81 104-185 2-84 (84)
153 PRK15331 chaperone protein Sic 98.9 4.6E-08 9.9E-13 83.2 15.0 105 88-193 34-138 (165)
154 PRK02603 photosystem I assembl 98.9 1.8E-08 4E-13 91.3 13.7 119 88-226 32-153 (172)
155 KOG2471 TPR repeat-containing 98.9 9.8E-07 2.1E-11 86.7 25.8 147 200-347 213-380 (696)
156 KOG1070 rRNA processing protei 98.9 2.2E-07 4.8E-12 102.2 23.7 222 210-439 1441-1667(1710)
157 PF13414 TPR_11: TPR repeat; P 98.9 3.4E-09 7.3E-14 79.3 7.1 63 127-189 5-68 (69)
158 CHL00033 ycf3 photosystem I as 98.9 2.5E-08 5.3E-13 90.2 14.1 122 139-260 13-153 (168)
159 PF09976 TPR_21: Tetratricopep 98.9 6.9E-08 1.5E-12 84.6 16.2 116 137-253 23-144 (145)
160 cd00189 TPR Tetratricopeptide 98.9 2.1E-08 4.5E-13 81.4 12.2 98 161-258 2-99 (100)
161 PRK10153 DNA-binding transcrip 98.9 8.4E-08 1.8E-12 101.4 19.6 137 153-292 331-482 (517)
162 KOG3081 Vesicle coat complex C 98.9 5.7E-07 1.2E-11 81.6 21.7 158 268-439 113-275 (299)
163 PF14938 SNAP: Soluble NSF att 98.9 1.1E-07 2.4E-12 93.7 19.1 20 132-151 42-61 (282)
164 PF13414 TPR_11: TPR repeat; P 98.9 6.5E-09 1.4E-13 77.8 8.0 66 159-224 3-69 (69)
165 COG4785 NlpI Lipoprotein NlpI, 98.9 1.8E-07 3.9E-12 81.7 17.6 197 90-292 64-266 (297)
166 KOG1914 mRNA cleavage and poly 98.9 5.8E-05 1.2E-09 75.8 36.8 422 115-565 10-503 (656)
167 PF13432 TPR_16: Tetratricopep 98.9 4E-09 8.7E-14 77.7 6.3 62 97-158 3-64 (65)
168 KOG3616 Selective LIM binding 98.9 8.5E-05 1.8E-09 77.0 38.3 48 101-149 454-501 (1636)
169 KOG0543 FKBP-type peptidyl-pro 98.9 7.7E-08 1.7E-12 93.2 15.9 99 160-258 258-357 (397)
170 COG4105 ComL DNA uptake lipopr 98.9 1E-06 2.2E-11 80.7 22.2 161 90-250 33-227 (254)
171 PF14938 SNAP: Soluble NSF att 98.9 6.2E-08 1.3E-12 95.5 15.7 211 140-365 30-266 (282)
172 PRK15331 chaperone protein Sic 98.9 3.6E-08 7.8E-13 83.8 11.8 108 120-228 32-139 (165)
173 PRK10803 tol-pal system protei 98.9 6.1E-08 1.3E-12 92.7 14.8 105 91-195 142-253 (263)
174 PF13432 TPR_16: Tetratricopep 98.9 1.3E-08 2.7E-13 75.1 7.9 62 131-192 3-64 (65)
175 PF12895 Apc3: Anaphase-promot 98.8 7.4E-09 1.6E-13 80.8 6.7 79 139-218 3-83 (84)
176 KOG3081 Vesicle coat complex C 98.8 1.1E-06 2.5E-11 79.8 20.9 244 99-392 16-261 (299)
177 COG3898 Uncharacterized membra 98.8 8.8E-06 1.9E-10 78.0 27.8 294 92-401 85-392 (531)
178 COG3898 Uncharacterized membra 98.8 3.9E-05 8.4E-10 73.7 31.7 293 130-436 89-393 (531)
179 KOG4648 Uncharacterized conser 98.8 2E-08 4.3E-13 93.7 9.4 99 97-195 103-201 (536)
180 COG0457 NrfG FOG: TPR repeat [ 98.8 2.9E-05 6.3E-10 75.8 32.7 154 139-292 37-196 (291)
181 KOG2300 Uncharacterized conser 98.8 0.00023 5.1E-09 70.5 37.9 459 126-644 8-529 (629)
182 PRK10803 tol-pal system protei 98.8 2.5E-07 5.5E-12 88.5 15.8 89 172-260 156-250 (263)
183 COG0457 NrfG FOG: TPR repeat [ 98.8 3.5E-05 7.5E-10 75.2 32.0 227 172-404 36-268 (291)
184 KOG0543 FKBP-type peptidyl-pro 98.8 1.6E-07 3.5E-12 91.1 14.2 97 194-292 258-355 (397)
185 PF12688 TPR_5: Tetratrico pep 98.7 3.6E-07 7.7E-12 75.2 13.6 95 126-220 2-102 (120)
186 KOG1914 mRNA cleavage and poly 98.7 0.00043 9.2E-09 69.8 37.5 397 149-598 10-464 (656)
187 KOG2471 TPR repeat-containing 98.7 5.1E-06 1.1E-10 81.8 23.4 338 95-434 210-683 (696)
188 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 4.5E-07 9.7E-12 91.3 16.1 114 136-252 180-293 (395)
189 COG4105 ComL DNA uptake lipopr 98.7 3.3E-06 7.2E-11 77.4 20.1 195 494-759 33-227 (254)
190 PF14559 TPR_19: Tetratricopep 98.7 4.9E-08 1.1E-12 72.8 7.0 66 102-167 2-67 (68)
191 KOG4648 Uncharacterized conser 98.7 8.8E-09 1.9E-13 96.0 3.2 245 128-415 100-344 (536)
192 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 5.3E-07 1.1E-11 90.8 15.9 121 99-222 177-297 (395)
193 PF13512 TPR_18: Tetratricopep 98.7 5.8E-07 1.3E-11 74.9 12.9 84 91-174 10-99 (142)
194 COG1729 Uncharacterized protei 98.7 5.5E-07 1.2E-11 83.4 13.9 107 92-198 142-254 (262)
195 KOG4234 TPR repeat-containing 98.6 1.1E-06 2.5E-11 75.8 13.1 106 130-235 100-210 (271)
196 PF12688 TPR_5: Tetratrico pep 98.6 1.3E-06 2.9E-11 71.8 13.1 96 160-255 2-103 (120)
197 PF14559 TPR_19: Tetratricopep 98.6 1.8E-07 3.9E-12 69.7 7.0 57 172-228 4-60 (68)
198 COG4700 Uncharacterized protei 98.6 8.9E-06 1.9E-10 69.6 17.4 156 272-433 65-220 (251)
199 KOG2796 Uncharacterized conser 98.5 3.9E-05 8.5E-10 69.6 21.6 137 303-439 179-319 (366)
200 PF13371 TPR_9: Tetratricopept 98.5 6.6E-07 1.4E-11 67.7 8.6 62 168-229 4-65 (73)
201 COG1729 Uncharacterized protei 98.5 3.2E-06 6.9E-11 78.4 14.5 103 128-230 144-252 (262)
202 COG4700 Uncharacterized protei 98.5 1.9E-05 4.2E-10 67.6 17.9 149 140-292 71-222 (251)
203 PF13371 TPR_9: Tetratricopept 98.5 7.4E-07 1.6E-11 67.5 8.6 67 99-165 3-69 (73)
204 KOG1258 mRNA processing protei 98.5 0.0015 3.3E-08 67.3 34.0 213 346-580 265-487 (577)
205 PF13512 TPR_18: Tetratricopep 98.5 5.3E-06 1.2E-10 69.2 13.3 82 126-207 11-98 (142)
206 PF10345 Cohesin_load: Cohesin 98.4 0.006 1.3E-07 67.5 43.2 439 108-562 38-605 (608)
207 KOG4507 Uncharacterized conser 98.4 1.6E-05 3.5E-10 80.1 17.0 112 115-226 203-316 (886)
208 PF06552 TOM20_plant: Plant sp 98.4 2.4E-06 5.1E-11 73.5 9.8 96 619-714 7-113 (186)
209 PF13424 TPR_12: Tetratricopep 98.4 3.9E-07 8.5E-12 70.0 4.5 71 681-765 5-75 (78)
210 KOG4234 TPR repeat-containing 98.4 5.4E-06 1.2E-10 71.7 11.6 109 93-201 97-210 (271)
211 KOG1258 mRNA processing protei 98.4 0.0047 1E-07 63.9 38.4 381 108-508 62-488 (577)
212 KOG0985 Vesicle coat protein c 98.3 0.0099 2.1E-07 64.8 41.1 364 88-515 983-1374(1666)
213 KOG4555 TPR repeat-containing 98.3 3.6E-05 7.8E-10 61.7 13.3 97 94-190 46-146 (175)
214 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.4E-05 3.1E-10 79.9 13.2 68 121-188 71-141 (453)
215 KOG2796 Uncharacterized conser 98.3 0.0014 3.1E-08 59.8 24.4 190 197-406 126-320 (366)
216 KOG4642 Chaperone-dependent E3 98.2 1.6E-05 3.4E-10 71.1 11.3 102 87-188 6-107 (284)
217 KOG4507 Uncharacterized conser 98.2 0.00015 3.2E-09 73.4 19.0 116 147-262 201-318 (886)
218 KOG2610 Uncharacterized conser 98.2 0.00052 1.1E-08 64.8 20.6 154 99-252 111-272 (491)
219 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 9.5E-06 2.1E-10 81.1 9.9 69 154-222 70-141 (453)
220 KOG4555 TPR repeat-containing 98.2 7.7E-05 1.7E-09 59.8 12.6 97 129-225 47-147 (175)
221 KOG1586 Protein required for f 98.1 0.0017 3.6E-08 58.4 21.3 184 89-273 31-241 (288)
222 KOG1586 Protein required for f 98.1 0.001 2.2E-08 59.7 19.9 124 208-331 88-225 (288)
223 PF06552 TOM20_plant: Plant sp 98.1 3.4E-05 7.4E-10 66.5 10.0 53 176-228 52-115 (186)
224 PF04184 ST7: ST7 protein; In 98.1 0.001 2.2E-08 66.9 21.7 61 229-289 261-321 (539)
225 KOG1585 Protein required for f 98.1 0.0014 3E-08 59.3 20.0 233 280-557 10-250 (308)
226 KOG1585 Protein required for f 98.0 0.00091 2E-08 60.4 18.4 123 130-252 36-175 (308)
227 PF13424 TPR_12: Tetratricopep 98.0 6.1E-06 1.3E-10 63.3 4.4 23 197-219 50-72 (78)
228 COG3118 Thioredoxin domain-con 98.0 0.00064 1.4E-08 63.8 17.8 160 90-250 133-295 (304)
229 PF05843 Suf: Suppressor of fo 98.0 0.00017 3.7E-09 70.7 14.4 134 161-294 3-138 (280)
230 PF04184 ST7: ST7 protein; In 97.9 0.00048 1E-08 69.2 16.8 192 201-410 176-384 (539)
231 PF13428 TPR_14: Tetratricopep 97.9 2.1E-05 4.5E-10 52.0 5.1 40 127-166 3-42 (44)
232 PF13428 TPR_14: Tetratricopep 97.9 2E-05 4.3E-10 52.1 5.1 42 373-414 2-43 (44)
233 PF00515 TPR_1: Tetratricopept 97.9 1E-05 2.3E-10 50.0 3.5 32 682-713 2-33 (34)
234 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.031 6.6E-07 55.6 37.5 473 114-639 31-538 (660)
235 PF05843 Suf: Suppressor of fo 97.9 0.00027 5.9E-09 69.4 14.4 131 129-259 5-139 (280)
236 PF07079 DUF1347: Protein of u 97.9 0.033 7.2E-07 55.5 40.4 443 93-573 8-530 (549)
237 PF13431 TPR_17: Tetratricopep 97.9 1.6E-05 3.4E-10 48.7 3.2 34 703-757 1-34 (34)
238 KOG4642 Chaperone-dependent E3 97.9 4.6E-05 1E-09 68.3 7.2 92 165-256 16-107 (284)
239 KOG2610 Uncharacterized conser 97.8 0.00037 8.1E-09 65.8 13.2 118 134-251 112-233 (491)
240 KOG2041 WD40 repeat protein [G 97.8 0.045 9.8E-07 57.4 28.9 237 158-432 691-936 (1189)
241 KOG1550 Extracellular protein 97.8 0.0087 1.9E-07 65.0 25.8 278 106-401 227-538 (552)
242 KOG0985 Vesicle coat protein c 97.8 0.085 1.8E-06 58.0 43.4 328 123-507 982-1325(1666)
243 PF02259 FAT: FAT domain; Int 97.8 0.014 3E-07 60.4 26.4 292 98-404 5-341 (352)
244 PF07719 TPR_2: Tetratricopept 97.8 3.2E-05 6.9E-10 47.9 3.8 33 681-713 1-33 (34)
245 KOG0376 Serine-threonine phosp 97.8 3.9E-05 8.4E-10 76.5 6.3 108 96-203 9-116 (476)
246 PF10345 Cohesin_load: Cohesin 97.8 0.11 2.4E-06 57.7 45.6 289 141-430 37-428 (608)
247 KOG1550 Extracellular protein 97.7 0.011 2.5E-07 64.2 24.5 277 141-438 228-541 (552)
248 KOG0545 Aryl-hydrocarbon recep 97.7 0.00052 1.1E-08 61.9 11.4 115 91-229 178-300 (329)
249 COG2909 MalT ATP-dependent tra 97.7 0.018 3.9E-07 62.5 24.5 287 265-567 349-651 (894)
250 PF13431 TPR_17: Tetratricopep 97.7 5.5E-05 1.2E-09 46.3 3.5 32 395-426 2-33 (34)
251 PF13281 DUF4071: Domain of un 97.6 0.025 5.5E-07 56.5 23.4 79 126-204 142-228 (374)
252 COG2909 MalT ATP-dependent tra 97.6 0.15 3.3E-06 55.7 30.6 304 125-434 347-687 (894)
253 COG3118 Thioredoxin domain-con 97.6 0.0034 7.3E-08 59.1 16.1 151 126-277 135-286 (304)
254 PF08631 SPO22: Meiosis protei 97.6 0.052 1.1E-06 53.4 25.6 65 194-258 85-152 (278)
255 KOG0530 Protein farnesyltransf 97.6 0.023 5E-07 52.3 20.2 173 101-275 53-233 (318)
256 PF13181 TPR_8: Tetratricopept 97.6 0.0001 2.3E-09 45.5 4.0 32 682-713 2-33 (34)
257 KOG0376 Serine-threonine phosp 97.6 9.7E-05 2.1E-09 73.8 5.6 100 132-231 11-110 (476)
258 KOG0545 Aryl-hydrocarbon recep 97.5 0.0017 3.7E-08 58.7 12.0 70 193-262 230-299 (329)
259 PF10300 DUF3808: Protein of u 97.5 0.0025 5.4E-08 67.4 15.0 117 104-220 246-374 (468)
260 PRK15180 Vi polysaccharide bio 97.5 0.14 2.9E-06 51.6 25.3 126 136-261 300-425 (831)
261 PF08631 SPO22: Meiosis protei 97.5 0.13 2.8E-06 50.6 26.4 124 101-224 3-152 (278)
262 PF13281 DUF4071: Domain of un 97.4 0.023 5.1E-07 56.8 19.9 123 158-283 140-279 (374)
263 PF00515 TPR_1: Tetratricopept 97.4 0.0003 6.6E-09 43.4 4.4 34 372-405 1-34 (34)
264 PF07719 TPR_2: Tetratricopept 97.4 0.00045 9.8E-09 42.6 5.1 34 372-405 1-34 (34)
265 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.18 3.9E-06 50.4 27.9 69 85-153 36-104 (660)
266 PF03704 BTAD: Bacterial trans 97.3 0.0053 1.1E-07 53.8 13.2 118 92-221 7-124 (146)
267 PF13174 TPR_6: Tetratricopept 97.3 0.00036 7.7E-09 42.7 4.1 32 682-713 1-32 (33)
268 PF10300 DUF3808: Protein of u 97.3 0.0071 1.5E-07 64.1 16.0 120 278-402 248-377 (468)
269 PF13176 TPR_7: Tetratricopept 97.3 0.00035 7.6E-09 43.6 3.7 31 683-713 1-31 (36)
270 KOG0890 Protein kinase of the 97.3 0.81 1.8E-05 55.9 38.3 405 96-525 1388-1834(2382)
271 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0023 5.1E-08 60.7 10.4 97 93-189 83-183 (390)
272 COG4649 Uncharacterized protei 97.3 0.04 8.6E-07 47.3 16.5 126 239-364 70-195 (221)
273 COG2976 Uncharacterized protei 97.3 0.021 4.7E-07 50.3 15.4 118 143-261 70-193 (207)
274 PRK11619 lytic murein transgly 97.3 0.47 1E-05 52.4 40.5 412 91-561 33-466 (644)
275 KOG1463 26S proteasome regulat 97.2 0.21 4.6E-06 48.0 24.1 113 449-564 125-239 (411)
276 PF03704 BTAD: Bacterial trans 97.2 0.01 2.2E-07 52.0 13.3 61 194-254 63-123 (146)
277 KOG1308 Hsp70-interacting prot 97.1 0.0007 1.5E-08 64.5 5.2 95 95-189 118-212 (377)
278 PF02259 FAT: FAT domain; Int 97.1 0.1 2.2E-06 53.9 22.1 276 131-419 4-305 (352)
279 KOG0128 RNA-binding protein SA 97.1 0.67 1.5E-05 50.4 30.4 424 105-559 93-559 (881)
280 COG2976 Uncharacterized protei 97.0 0.023 4.9E-07 50.1 13.3 61 339-402 129-189 (207)
281 PF07079 DUF1347: Protein of u 97.0 0.43 9.4E-06 48.0 41.5 41 610-651 469-509 (549)
282 PF08424 NRDE-2: NRDE-2, neces 97.0 0.052 1.1E-06 54.6 17.7 110 112-221 6-130 (321)
283 KOG2396 HAT (Half-A-TPR) repea 97.0 0.54 1.2E-05 48.0 37.5 86 493-583 458-545 (568)
284 KOG0530 Protein farnesyltransf 96.9 0.34 7.3E-06 45.0 21.3 187 104-313 39-233 (318)
285 PF08424 NRDE-2: NRDE-2, neces 96.9 0.067 1.4E-06 53.8 17.8 161 182-365 8-183 (321)
286 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0091 2E-07 56.8 10.5 105 335-439 80-186 (390)
287 COG5159 RPN6 26S proteasome re 96.9 0.39 8.4E-06 45.1 20.4 111 452-565 125-237 (421)
288 PF13181 TPR_8: Tetratricopept 96.8 0.003 6.4E-08 38.8 4.7 32 373-404 2-33 (34)
289 COG4649 Uncharacterized protei 96.8 0.18 3.9E-06 43.5 15.9 143 270-416 65-210 (221)
290 COG0790 FOG: TPR repeat, SEL1 96.8 0.59 1.3E-05 46.7 23.2 168 99-277 49-236 (292)
291 KOG1464 COP9 signalosome, subu 96.7 0.22 4.9E-06 46.1 17.4 192 102-293 38-261 (440)
292 PRK11619 lytic murein transgly 96.7 1.4 3.1E-05 48.8 33.7 366 113-520 84-464 (644)
293 PRK13184 pknD serine/threonine 96.6 1.9 4.1E-05 49.4 33.9 371 95-478 479-922 (932)
294 PF04910 Tcf25: Transcriptiona 96.6 0.091 2E-06 53.4 16.2 166 118-293 33-223 (360)
295 PF04910 Tcf25: Transcriptiona 96.6 0.28 6.2E-06 49.9 19.3 145 186-331 33-223 (360)
296 PF09613 HrpB1_HrpK: Bacterial 96.6 0.05 1.1E-06 46.8 11.5 104 91-196 10-113 (160)
297 KOG1308 Hsp70-interacting prot 96.5 0.0035 7.5E-08 60.0 4.7 93 132-224 121-213 (377)
298 PF04781 DUF627: Protein of un 96.5 0.031 6.8E-07 44.4 9.1 103 97-222 2-107 (111)
299 KOG1464 COP9 signalosome, subu 96.5 0.43 9.2E-06 44.4 17.4 116 305-420 149-286 (440)
300 PF13174 TPR_6: Tetratricopept 96.5 0.0078 1.7E-07 36.6 4.7 33 373-405 1-33 (33)
301 KOG2041 WD40 repeat protein [G 96.4 1.8 3.9E-05 46.1 30.9 194 100-326 672-877 (1189)
302 KOG3824 Huntingtin interacting 96.4 0.014 3.1E-07 54.7 7.8 64 137-200 128-191 (472)
303 COG0790 FOG: TPR repeat, SEL1 96.3 0.4 8.7E-06 47.8 18.8 131 104-241 90-236 (292)
304 COG1747 Uncharacterized N-term 96.3 1.6 3.4E-05 44.8 22.3 98 156-256 63-160 (711)
305 PRK15180 Vi polysaccharide bio 96.2 1.8 3.9E-05 44.0 29.6 128 99-226 297-424 (831)
306 KOG3783 Uncharacterized conser 96.1 0.46 9.9E-06 49.1 17.5 242 490-762 262-517 (546)
307 PF14561 TPR_20: Tetratricopep 96.1 0.1 2.2E-06 40.7 10.3 66 213-278 8-73 (90)
308 KOG1538 Uncharacterized conser 96.0 0.51 1.1E-05 49.5 17.1 181 197-398 636-830 (1081)
309 PF09613 HrpB1_HrpK: Bacterial 96.0 0.16 3.4E-06 43.8 11.5 81 162-242 13-93 (160)
310 PF04781 DUF627: Protein of un 95.9 0.1 2.2E-06 41.6 9.5 90 167-256 4-107 (111)
311 PF13176 TPR_7: Tetratricopept 95.9 0.021 4.6E-07 35.5 4.5 27 375-401 2-28 (36)
312 PF14561 TPR_20: Tetratricopep 95.9 0.11 2.4E-06 40.5 9.4 64 111-174 8-73 (90)
313 PRK13184 pknD serine/threonine 95.8 4.4 9.6E-05 46.6 25.4 326 132-479 482-867 (932)
314 PF12968 DUF3856: Domain of Un 95.8 0.79 1.7E-05 36.8 13.5 96 92-187 10-128 (144)
315 PRK10941 hypothetical protein; 95.7 0.11 2.3E-06 50.1 10.8 65 198-262 186-250 (269)
316 smart00028 TPR Tetratricopepti 95.7 0.016 3.5E-07 34.7 3.7 31 682-712 2-32 (34)
317 TIGR02561 HrpB1_HrpK type III 95.7 0.56 1.2E-05 39.7 13.5 84 93-176 12-95 (153)
318 PF14853 Fis1_TPR_C: Fis1 C-te 95.6 0.05 1.1E-06 37.1 5.8 34 128-161 4-37 (53)
319 KOG1538 Uncharacterized conser 95.5 0.93 2E-05 47.7 17.0 185 268-478 637-830 (1081)
320 KOG3824 Huntingtin interacting 95.5 0.047 1E-06 51.4 7.0 69 168-236 125-193 (472)
321 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.099 2.2E-06 35.6 6.5 34 196-229 4-37 (53)
322 PF10602 RPN7: 26S proteasome 95.3 0.31 6.7E-06 43.9 11.6 104 228-331 37-143 (177)
323 PRK10941 hypothetical protein; 95.2 0.19 4.1E-06 48.4 10.6 78 337-416 182-259 (269)
324 KOG1310 WD40 repeat protein [G 95.0 0.12 2.6E-06 52.7 8.6 109 85-193 368-479 (758)
325 KOG0890 Protein kinase of the 94.9 14 0.00031 46.0 40.0 307 99-414 1428-1797(2382)
326 COG3914 Spy Predicted O-linked 94.8 0.99 2.1E-05 47.2 14.8 126 110-235 50-184 (620)
327 PF04053 Coatomer_WDAD: Coatom 94.8 1.9 4.1E-05 45.3 17.3 160 99-290 269-429 (443)
328 smart00028 TPR Tetratricopepti 94.8 0.059 1.3E-06 32.1 4.1 30 127-156 3-32 (34)
329 PF04053 Coatomer_WDAD: Coatom 94.7 1.2 2.6E-05 46.7 15.7 126 273-429 271-396 (443)
330 KOG1839 Uncharacterized protei 94.7 0.35 7.7E-06 55.4 12.4 165 89-253 930-1125(1236)
331 KOG2396 HAT (Half-A-TPR) repea 94.7 6.1 0.00013 40.8 40.6 89 110-198 90-179 (568)
332 TIGR02561 HrpB1_HrpK type III 94.6 0.42 9.1E-06 40.5 9.4 74 169-242 20-93 (153)
333 COG3914 Spy Predicted O-linked 94.4 2.1 4.5E-05 45.0 16.0 124 139-262 45-177 (620)
334 PF09986 DUF2225: Uncharacteri 94.4 0.7 1.5E-05 43.0 11.7 67 336-402 118-195 (214)
335 COG5159 RPN6 26S proteasome re 94.2 5.1 0.00011 37.9 20.5 299 95-419 7-332 (421)
336 PF12968 DUF3856: Domain of Un 94.2 0.93 2E-05 36.4 10.1 108 418-525 21-130 (144)
337 PF13374 TPR_10: Tetratricopep 94.2 0.076 1.6E-06 34.3 3.7 31 682-712 3-33 (42)
338 PF10602 RPN7: 26S proteasome 94.0 1.4 2.9E-05 39.8 12.6 96 195-290 38-140 (177)
339 KOG3364 Membrane protein invol 93.9 1.2 2.7E-05 36.8 10.5 74 337-411 33-110 (149)
340 COG4976 Predicted methyltransf 93.9 0.093 2E-06 47.4 4.6 57 102-158 6-62 (287)
341 PF11207 DUF2989: Protein of u 93.7 4.4 9.5E-05 36.7 14.7 72 353-426 123-198 (203)
342 KOG4814 Uncharacterized conser 93.7 0.52 1.1E-05 49.5 10.1 95 94-188 357-457 (872)
343 PF09986 DUF2225: Uncharacteri 93.7 0.88 1.9E-05 42.4 10.9 28 265-292 120-147 (214)
344 KOG3364 Membrane protein invol 93.5 2.2 4.8E-05 35.4 11.4 73 159-231 32-109 (149)
345 PF10579 Rapsyn_N: Rapsyn N-te 93.5 0.59 1.3E-05 34.6 7.4 63 91-153 6-71 (80)
346 COG4976 Predicted methyltransf 93.2 0.15 3.3E-06 46.2 4.8 58 169-226 5-62 (287)
347 KOG2422 Uncharacterized conser 93.2 9.5 0.00021 40.2 17.9 48 104-151 251-310 (665)
348 KOG1463 26S proteasome regulat 93.2 9.1 0.0002 37.4 21.4 284 94-404 7-319 (411)
349 PF07721 TPR_4: Tetratricopept 93.0 0.18 3.9E-06 28.5 3.4 25 737-761 2-26 (26)
350 KOG3783 Uncharacterized conser 93.0 14 0.00029 38.9 21.7 247 210-479 250-518 (546)
351 PF13374 TPR_10: Tetratricopep 92.9 0.12 2.7E-06 33.2 3.0 29 736-764 2-30 (42)
352 KOG1839 Uncharacterized protei 92.7 1.7 3.8E-05 50.2 13.1 166 127-292 934-1128(1236)
353 PF07721 TPR_4: Tetratricopept 92.6 0.14 3.1E-06 28.9 2.6 25 681-705 1-25 (26)
354 PF15015 NYD-SP12_N: Spermatog 92.5 0.99 2.1E-05 45.0 9.7 116 86-217 167-286 (569)
355 COG5191 Uncharacterized conser 92.4 0.29 6.4E-06 46.4 5.7 76 155-230 103-179 (435)
356 KOG1310 WD40 repeat protein [G 92.1 0.58 1.3E-05 48.0 7.8 88 174-261 389-479 (758)
357 KOG2422 Uncharacterized conser 92.1 15 0.00032 38.8 17.6 117 172-289 251-404 (665)
358 PF04190 DUF410: Protein of un 91.9 13 0.00028 36.1 17.8 25 226-250 89-113 (260)
359 PF10516 SHNi-TPR: SHNi-TPR; 91.7 0.37 8.1E-06 30.1 3.8 32 682-713 2-33 (38)
360 TIGR03504 FimV_Cterm FimV C-te 91.4 0.29 6.2E-06 31.8 3.2 25 739-763 2-26 (44)
361 PF11207 DUF2989: Protein of u 91.4 2.4 5.3E-05 38.3 10.1 79 314-393 119-199 (203)
362 COG5191 Uncharacterized conser 91.4 0.53 1.1E-05 44.8 6.1 82 181-262 95-177 (435)
363 KOG3807 Predicted membrane pro 90.6 17 0.00038 35.3 20.4 49 171-221 196-244 (556)
364 PF12862 Apc5: Anaphase-promot 90.5 2.9 6.3E-05 33.0 9.0 27 266-292 44-70 (94)
365 COG2912 Uncharacterized conser 90.2 3.2 7E-05 39.4 10.3 62 168-229 190-251 (269)
366 KOG2581 26S proteasome regulat 90.2 22 0.00048 35.8 19.5 125 302-426 170-307 (493)
367 TIGR03504 FimV_Cterm FimV C-te 90.2 0.53 1.1E-05 30.6 3.6 27 684-710 2-28 (44)
368 KOG3807 Predicted membrane pro 90.0 20 0.00043 34.9 16.2 148 130-290 189-338 (556)
369 PRK12798 chemotaxis protein; R 89.8 25 0.00055 35.9 19.5 231 308-560 87-321 (421)
370 COG3629 DnrI DNA-binding trans 89.6 6.5 0.00014 38.0 12.0 64 159-222 153-216 (280)
371 KOG2114 Vacuolar assembly/sort 89.6 35 0.00076 38.0 18.3 249 133-407 342-596 (933)
372 COG1747 Uncharacterized N-term 89.4 30 0.00065 36.1 25.4 209 132-365 73-288 (711)
373 KOG0128 RNA-binding protein SA 89.4 40 0.00086 37.6 31.5 119 137-256 91-219 (881)
374 PF12862 Apc5: Anaphase-promot 89.1 3.1 6.8E-05 32.8 8.2 33 229-261 43-75 (94)
375 KOG2114 Vacuolar assembly/sort 88.8 44 0.00095 37.3 19.8 26 544-569 571-596 (933)
376 PF07720 TPR_3: Tetratricopept 88.6 0.97 2.1E-05 27.9 3.8 32 682-713 2-35 (36)
377 KOG2062 26S proteasome regulat 88.5 43 0.00093 36.8 29.8 60 506-568 368-429 (929)
378 COG3629 DnrI DNA-binding trans 88.4 2.6 5.6E-05 40.7 8.4 59 195-253 155-213 (280)
379 PRK12798 chemotaxis protein; R 88.3 33 0.00071 35.1 24.4 214 159-375 112-334 (421)
380 PF15015 NYD-SP12_N: Spermatog 88.0 7.9 0.00017 39.0 11.4 87 196-285 231-320 (569)
381 COG2912 Uncharacterized conser 88.0 2 4.3E-05 40.8 7.2 75 128-202 184-258 (269)
382 PF10579 Rapsyn_N: Rapsyn N-te 87.9 5.6 0.00012 29.6 7.9 60 233-292 12-72 (80)
383 KOG0529 Protein geranylgeranyl 87.6 25 0.00054 35.7 14.6 167 96-262 33-230 (421)
384 smart00386 HAT HAT (Half-A-TPR 86.7 1.4 3.1E-05 26.1 3.9 31 548-578 1-31 (33)
385 PF07720 TPR_3: Tetratricopept 86.6 2.8 6E-05 25.9 5.0 32 373-404 2-35 (36)
386 KOG2062 26S proteasome regulat 85.9 60 0.0013 35.7 20.0 300 103-416 369-689 (929)
387 PF09670 Cas_Cas02710: CRISPR- 85.8 13 0.00028 38.4 12.5 62 93-154 133-198 (379)
388 PF10516 SHNi-TPR: SHNi-TPR; 85.6 1.7 3.7E-05 27.2 3.7 29 373-401 2-30 (38)
389 PF13041 PPR_2: PPR repeat fam 84.7 4 8.6E-05 27.4 5.7 29 338-366 5-33 (50)
390 PF13041 PPR_2: PPR repeat fam 84.4 4.2 9.2E-05 27.3 5.7 42 303-344 5-46 (50)
391 COG5187 RPN7 26S proteasome re 81.8 51 0.0011 31.7 13.4 104 227-331 115-222 (412)
392 PF12854 PPR_1: PPR repeat 81.6 3 6.5E-05 25.3 3.6 28 89-116 5-32 (34)
393 COG4455 ImpE Protein of avirul 81.4 9.8 0.00021 34.8 8.0 61 99-159 9-69 (273)
394 KOG0529 Protein geranylgeranyl 81.3 67 0.0015 32.8 14.7 144 549-693 90-241 (421)
395 PF11817 Foie-gras_1: Foie gra 81.2 53 0.0012 31.6 14.2 59 267-325 182-242 (247)
396 PF12739 TRAPPC-Trs85: ER-Golg 80.7 67 0.0014 33.8 15.6 24 342-365 376-399 (414)
397 KOG2063 Vacuolar assembly/sort 80.6 1.1E+02 0.0025 35.1 17.7 55 98-152 314-373 (877)
398 PF12854 PPR_1: PPR repeat 80.3 4.2 9.1E-05 24.7 4.0 21 230-250 10-30 (34)
399 KOG2581 26S proteasome regulat 79.9 74 0.0016 32.4 21.5 155 453-638 127-282 (493)
400 PF14863 Alkyl_sulf_dimr: Alky 79.7 6.2 0.00013 33.8 6.1 49 92-140 71-119 (141)
401 COG3947 Response regulator con 78.6 8.6 0.00019 36.8 7.1 59 162-220 282-340 (361)
402 smart00386 HAT HAT (Half-A-TPR 78.3 5.8 0.00013 23.3 4.3 30 386-415 1-30 (33)
403 COG4455 ImpE Protein of avirul 78.2 19 0.00041 33.0 8.8 58 203-260 11-68 (273)
404 PF10255 Paf67: RNA polymerase 77.4 38 0.00081 35.0 11.9 59 305-363 126-191 (404)
405 COG3947 Response regulator con 77.0 12 0.00027 35.8 7.6 62 194-255 280-341 (361)
406 PF10373 EST1_DNA_bind: Est1 D 76.8 7.7 0.00017 38.2 7.1 41 180-220 3-43 (278)
407 PF10373 EST1_DNA_bind: Est1 D 76.7 12 0.00026 36.9 8.4 62 110-171 1-62 (278)
408 KOG2063 Vacuolar assembly/sort 76.5 1.3E+02 0.0029 34.6 16.7 193 497-712 506-715 (877)
409 KOG4014 Uncharacterized conser 75.5 59 0.0013 29.0 14.9 187 86-292 31-233 (248)
410 smart00299 CLH Clathrin heavy 74.6 54 0.0012 28.0 16.0 33 206-238 20-52 (140)
411 KOG0276 Vesicle coat complex C 73.1 71 0.0015 34.3 12.5 100 100-221 595-694 (794)
412 KOG0686 COP9 signalosome, subu 72.9 40 0.00088 34.1 10.3 64 229-292 152-216 (466)
413 PF00244 14-3-3: 14-3-3 protei 72.8 89 0.0019 29.8 13.6 52 511-562 142-197 (236)
414 KOG0276 Vesicle coat complex C 72.8 56 0.0012 35.0 11.7 126 99-253 622-747 (794)
415 TIGR00756 PPR pentatricopeptid 72.5 8.4 0.00018 22.9 4.0 26 340-365 4-29 (35)
416 KOG4014 Uncharacterized conser 71.7 74 0.0016 28.4 15.7 134 105-256 87-233 (248)
417 KOG0546 HSP90 co-chaperone CPR 71.0 8.3 0.00018 38.0 5.2 126 97-237 228-353 (372)
418 PF09670 Cas_Cas02710: CRISPR- 70.9 56 0.0012 33.8 11.7 60 129-188 135-198 (379)
419 PF10255 Paf67: RNA polymerase 70.1 47 0.001 34.3 10.6 59 162-221 125-192 (404)
420 KOG1920 IkappaB kinase complex 69.6 2.4E+02 0.0052 33.4 23.1 50 374-431 941-990 (1265)
421 PF06957 COPI_C: Coatomer (COP 69.4 64 0.0014 33.5 11.4 71 457-527 123-236 (422)
422 PF12739 TRAPPC-Trs85: ER-Golg 69.0 1.6E+02 0.0034 31.1 15.7 26 96-121 213-238 (414)
423 smart00299 CLH Clathrin heavy 68.8 74 0.0016 27.2 14.8 51 234-287 14-64 (140)
424 PF11817 Foie-gras_1: Foie gra 68.2 1.2E+02 0.0025 29.3 18.9 68 681-763 178-245 (247)
425 PF10952 DUF2753: Protein of u 68.2 21 0.00045 29.2 6.0 73 683-761 3-75 (140)
426 PF01535 PPR: PPR repeat; Int 68.1 8.8 0.00019 22.2 3.2 26 266-291 3-28 (31)
427 PF09797 NatB_MDM20: N-acetylt 67.7 37 0.0008 35.1 9.8 43 107-149 199-241 (365)
428 KOG2280 Vacuolar assembly/sort 67.7 2.1E+02 0.0045 32.0 24.6 105 310-433 693-797 (829)
429 PF13812 PPR_3: Pentatricopept 67.3 14 0.0003 21.9 4.1 26 339-364 4-29 (34)
430 KOG4279 Serine/threonine prote 66.7 28 0.0006 38.1 8.3 105 335-439 200-320 (1226)
431 KOG0687 26S proteasome regulat 65.4 1.5E+02 0.0032 29.4 13.1 104 227-331 104-211 (393)
432 KOG4521 Nuclear pore complex, 65.2 2.5E+02 0.0055 33.1 15.4 173 228-403 921-1134(1480)
433 COG4941 Predicted RNA polymera 64.6 1.6E+02 0.0034 29.4 15.9 133 277-414 270-407 (415)
434 PF01535 PPR: PPR repeat; Int 64.4 11 0.00024 21.7 3.2 24 231-254 4-27 (31)
435 PF04097 Nic96: Nup93/Nic96; 64.4 2.4E+02 0.0053 31.6 18.4 19 415-433 514-532 (613)
436 PF13226 DUF4034: Domain of un 63.7 98 0.0021 30.1 10.8 136 97-244 6-150 (277)
437 KOG0546 HSP90 co-chaperone CPR 62.9 13 0.00027 36.8 4.7 117 131-262 228-344 (372)
438 smart00101 14_3_3 14-3-3 homol 62.8 1.5E+02 0.0031 28.4 17.5 49 279-327 144-197 (244)
439 PF00244 14-3-3: 14-3-3 protei 61.6 1.5E+02 0.0033 28.2 15.2 16 384-399 181-196 (236)
440 COG5536 BET4 Protein prenyltra 60.7 1.6E+02 0.0036 28.4 12.1 167 96-262 36-228 (328)
441 TIGR00756 PPR pentatricopeptid 60.3 18 0.00038 21.4 3.7 27 266-292 3-29 (35)
442 PF14863 Alkyl_sulf_dimr: Alky 60.2 33 0.00071 29.4 6.3 48 373-420 71-118 (141)
443 PF04190 DUF410: Protein of un 59.9 1.7E+02 0.0037 28.4 20.8 137 261-420 88-242 (260)
444 KOG0686 COP9 signalosome, subu 59.7 2.1E+02 0.0046 29.3 12.7 63 265-328 152-214 (466)
445 KOG2066 Vacuolar assembly/sort 59.4 1.2E+02 0.0025 33.9 11.4 169 416-632 366-534 (846)
446 KOG4279 Serine/threonine prote 59.1 96 0.0021 34.3 10.5 120 298-421 198-335 (1226)
447 KOG4521 Nuclear pore complex, 57.8 3.9E+02 0.0084 31.7 16.8 30 125-154 920-949 (1480)
448 TIGR02710 CRISPR-associated pr 57.3 2.4E+02 0.0051 29.1 14.3 56 95-150 134-196 (380)
449 PF08311 Mad3_BUB1_I: Mad3/BUB 56.5 1.2E+02 0.0026 25.5 14.1 46 354-399 81-126 (126)
450 PF07219 HemY_N: HemY protein 56.5 55 0.0012 26.6 6.9 49 92-140 60-108 (108)
451 KOG2561 Adaptor protein NUB1, 56.3 67 0.0014 32.9 8.4 42 607-648 271-316 (568)
452 PF04840 Vps16_C: Vps16, C-ter 56.2 2.3E+02 0.0049 28.6 27.9 104 311-434 187-290 (319)
453 TIGR03362 VI_chp_7 type VI sec 55.5 2.2E+02 0.0048 28.3 15.1 160 86-256 97-279 (301)
454 PF10037 MRP-S27: Mitochondria 55.4 2.2E+02 0.0047 30.0 12.4 58 341-399 108-165 (429)
455 PF04090 RNA_pol_I_TF: RNA pol 54.2 1.8E+02 0.0038 26.7 12.1 35 352-386 158-192 (199)
456 PF04097 Nic96: Nup93/Nic96; 54.2 3.6E+02 0.0078 30.3 23.0 138 282-427 239-384 (613)
457 PF13226 DUF4034: Domain of un 53.5 1.6E+02 0.0035 28.7 10.4 137 133-284 8-154 (277)
458 PF08311 Mad3_BUB1_I: Mad3/BUB 53.5 1.4E+02 0.0029 25.2 13.9 115 246-362 4-125 (126)
459 PF04090 RNA_pol_I_TF: RNA pol 53.4 1.8E+02 0.004 26.7 11.1 28 129-156 45-72 (199)
460 PF08238 Sel1: Sel1 repeat; I 51.9 30 0.00065 21.3 3.8 29 682-710 2-37 (39)
461 smart00671 SEL1 Sel1-like repe 50.5 27 0.00058 21.0 3.3 29 682-710 2-34 (36)
462 cd02682 MIT_AAA_Arch MIT: doma 49.4 45 0.00097 24.8 4.6 29 90-118 5-33 (75)
463 TIGR03362 VI_chp_7 type VI sec 49.2 2.8E+02 0.0061 27.6 16.1 37 171-207 111-147 (301)
464 PF04348 LppC: LppC putative l 48.7 5.8 0.00013 43.1 0.0 21 543-563 323-343 (536)
465 PF04348 LppC: LppC putative l 48.6 5.8 0.00013 43.1 0.0 99 88-186 21-125 (536)
466 PRK15490 Vi polysaccharide bio 47.9 73 0.0016 34.6 7.8 80 660-762 21-100 (578)
467 PF02184 HAT: HAT (Half-A-TPR) 46.1 47 0.001 19.9 3.4 27 549-576 2-28 (32)
468 cd02683 MIT_1 MIT: domain cont 45.5 58 0.0012 24.5 4.9 30 90-119 5-34 (77)
469 PF11846 DUF3366: Domain of un 44.8 72 0.0016 29.3 6.6 47 177-224 129-175 (193)
470 COG3014 Uncharacterized protei 43.8 3.5E+02 0.0075 27.1 13.2 191 391-644 40-254 (449)
471 PF09205 DUF1955: Domain of un 43.7 2E+02 0.0044 24.3 15.0 31 92-122 3-33 (161)
472 cd02680 MIT_calpain7_2 MIT: do 42.9 42 0.0009 25.0 3.7 26 94-119 9-34 (75)
473 PF10037 MRP-S27: Mitochondria 42.7 3E+02 0.0066 29.0 11.1 104 267-372 70-173 (429)
474 KOG4151 Myosin assembly protei 42.5 79 0.0017 35.2 7.1 110 92-201 54-169 (748)
475 KOG0889 Histone acetyltransfer 41.9 1.1E+03 0.024 32.4 23.7 448 96-571 2487-2962(3550)
476 PF01851 PC_rep: Proteasome/cy 41.7 31 0.00068 21.1 2.4 26 738-764 2-27 (35)
477 KOG2561 Adaptor protein NUB1, 41.7 4.2E+02 0.009 27.6 11.3 27 266-292 270-296 (568)
478 cd02681 MIT_calpain7_1 MIT: do 41.5 68 0.0015 24.0 4.6 30 90-119 5-34 (76)
479 PHA02537 M terminase endonucle 40.6 2.3E+02 0.005 26.8 9.0 22 615-636 190-211 (230)
480 PF04212 MIT: MIT (microtubule 40.6 45 0.00097 24.3 3.7 28 684-711 8-35 (69)
481 smart00101 14_3_3 14-3-3 homol 40.4 3.4E+02 0.0074 26.0 16.4 57 375-431 4-64 (244)
482 PF11846 DUF3366: Domain of un 39.1 1E+02 0.0022 28.2 6.7 49 353-404 128-176 (193)
483 PF04212 MIT: MIT (microtubule 38.9 94 0.002 22.6 5.1 27 93-119 7-33 (69)
484 COG5187 RPN7 26S proteasome re 38.6 3.8E+02 0.0083 26.1 15.4 102 193-294 115-223 (412)
485 PF06957 COPI_C: Coatomer (COP 38.6 4.9E+02 0.011 27.3 12.0 115 454-569 206-335 (422)
486 PHA02537 M terminase endonucle 38.3 51 0.0011 31.0 4.4 22 205-226 190-211 (230)
487 PF12921 ATP13: Mitochondrial 37.7 2.5E+02 0.0054 23.6 10.1 48 259-308 48-95 (126)
488 COG4941 Predicted RNA polymera 36.9 4.5E+02 0.0097 26.4 15.7 133 505-643 266-405 (415)
489 KOG0687 26S proteasome regulat 36.0 4.6E+02 0.0099 26.2 13.3 27 194-220 105-131 (393)
490 PRK15490 Vi polysaccharide bio 34.9 2.8E+02 0.0061 30.4 9.7 51 165-217 48-98 (578)
491 cd02680 MIT_calpain7_2 MIT: do 34.8 89 0.0019 23.3 4.3 34 106-154 2-35 (75)
492 PF14929 TAF1_subA: TAF RNA Po 34.7 6.5E+02 0.014 27.6 12.5 139 141-292 300-441 (547)
493 PF00637 Clathrin: Region in C 34.7 7.4 0.00016 33.6 -1.5 52 383-434 18-70 (143)
494 KOG1920 IkappaB kinase complex 34.7 8.8E+02 0.019 29.1 29.0 23 95-117 681-703 (1265)
495 PF07163 Pex26: Pex26 protein; 34.3 4.5E+02 0.0098 25.6 15.0 28 266-293 38-65 (309)
496 cd02679 MIT_spastin MIT: domai 34.2 51 0.0011 24.9 3.0 28 685-712 12-39 (79)
497 cd02682 MIT_AAA_Arch MIT: doma 34.0 98 0.0021 23.1 4.4 31 610-640 20-50 (75)
498 smart00777 Mad3_BUB1_I Mad3/BU 33.6 1.9E+02 0.004 24.3 6.5 42 355-396 82-123 (125)
499 PF07219 HemY_N: HemY protein 33.5 1.6E+02 0.0034 23.9 6.1 46 128-173 62-107 (108)
500 TIGR02710 CRISPR-associated pr 33.5 5.6E+02 0.012 26.5 12.3 54 165-218 136-196 (380)
No 1
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=2.7e-67 Score=536.48 Aligned_cols=677 Identities=32% Similarity=0.482 Sum_probs=574.9
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004249 75 KKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY 154 (765)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 154 (765)
+++++...+.+.++|++..++++|+.++..|++++|..++.++++.+|.++.+|+.||.+|..+|+.++++.++-.|..+
T Consensus 123 ~k~~~~~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 123 KKRGRRSRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred CccCCCCCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 45555666778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HHH
Q 004249 155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-----IEA 229 (765)
Q Consensus 155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~ 229 (765)
+|.+.+.|..++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|.. ...
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999933 223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------
Q 004249 230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDL------------------ 291 (765)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------ 291 (765)
....+..+...++-+.|++.++.++....+......++.++.++.....++.|...+.....
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 44557888888888999999999998554444444678999999999999999999887766
Q ss_pred ----HhcCCCCcc--HHH-HHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHh
Q 004249 292 ----VYYSGKELL--LAL-KIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA 364 (765)
Q Consensus 292 ----~~~~~~~~~--~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 364 (765)
..+.+...+ ..+ +..++.+.++.++..+++..+...-...+..+++.+..++.++...|++.+|+.+|..+..
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 111111122 222 3444444455555555555554432223567788999999999999999999999999988
Q ss_pred ccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCccc
Q 004249 365 NAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDK 444 (765)
Q Consensus 365 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 444 (765)
.. .-++..+|+.+|.||..+|.+++|+++|++++...|++.+++..|+.++.++|++++|.+.+++....++.. ..
T Consensus 443 ~~-~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~---~e 518 (895)
T KOG2076|consen 443 RE-GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN---AE 518 (895)
T ss_pred Cc-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc---hh
Confidence 74 345578999999999999999999999999999999999999999999999999999999999988655432 12
Q ss_pred chhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccc---------------------------------------
Q 004249 445 THAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQ--------------------------------------- 485 (765)
Q Consensus 445 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l--------------------------------------- 485 (765)
...|+.+.++...++.++.+.|+.++.++....++......
T Consensus 519 ~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 598 (895)
T KOG2076|consen 519 ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATD 598 (895)
T ss_pred hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCc
Confidence 34577788899999999999999999998887776533220
Q ss_pred ------------------ccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCch-HHHHHHHHhhcccc
Q 004249 486 ------------------EETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVE-KEELYFLGAQIPCN 546 (765)
Q Consensus 486 ------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~~~ 546 (765)
-..+.-.++++.+..+..++.+.+++++|..++..++.....-.+.. ...+..++..+.+.
T Consensus 599 ~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~ 678 (895)
T KOG2076|consen 599 DNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLY 678 (895)
T ss_pred hHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHh
Confidence 00114456778999999999999999999999999998765432333 44777888889999
Q ss_pred cCChhhHHHHHHHHHHh-----CCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC-CCchhhhhhhhhhhhhHH
Q 004249 547 TTDPKLWFDGVRFMVKL-----HPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDF-VPPIIISGHQFTMISHHQ 620 (765)
Q Consensus 547 ~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~~g~~~~~~~~~~ 620 (765)
.+++..|.++++.++.. +|..+..|+....++...++. ....+++.++...+|++ ++...+.|+.++..+.|.
T Consensus 679 ~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~-v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~ 757 (895)
T KOG2076|consen 679 ARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQR-VCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFK 757 (895)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCccCCcceeeeechhHhhccchH
Confidence 99999999999999998 888889999766666666665 35567777777777777 777799999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCC--CchHHHhHHHHHHHhchHH
Q 004249 621 DAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAEN--SQEALYNIARAYHHVGLVS 698 (765)
Q Consensus 621 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~ 698 (765)
.|+.+|.+++..+|++|++++++|.+++++++++...+||.+|.||++|+++|.+++.. .+|+.||+|++||+.|..+
T Consensus 758 ~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~ 837 (895)
T KOG2076|consen 758 HALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVH 837 (895)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHH
Confidence 99999999999999999999999999999999999999999999999999999888765 9999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 004249 699 LAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF 765 (765)
Q Consensus 699 ~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l~~ 765 (765)
.|+.+|+|||+++|.....|. -.+.+++.+|+|||.+||..+||.++|+.+++|||+|
T Consensus 838 LA~~YYekvL~~~p~~~~~~~---------~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl~~ 895 (895)
T KOG2076|consen 838 LAVSYYEKVLEVSPKDVTDPK---------EDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYLVF 895 (895)
T ss_pred HHHHHHHHHhCCCcccccccc---------CCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhccC
Confidence 999999999999985421111 1478899999999999999999999999999999997
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.2e-51 Score=479.95 Aligned_cols=639 Identities=18% Similarity=0.150 Sum_probs=434.5
Q ss_pred HHHHHHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHH
Q 004249 50 RFEAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYH 129 (765)
Q Consensus 50 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 129 (765)
.+..++..+...|+++++...+..+... .+.++ ...+..|.+++..|++++|+..|++++..+|....++.
T Consensus 229 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 299 (899)
T TIGR02917 229 VLLALATILIEAGEFEEAEKHADALLKK-------APNSP--LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALL 299 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCc--hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHH
Confidence 3444566666667777666544111110 11111 23344556666677777777777777777776666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q 004249 130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNF 209 (765)
Q Consensus 130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 209 (765)
.+|.++...|++++|+..+.+++...|.+..++..++.++...|++++|+..+++++...|.++..+..+|.++...|++
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCH
Confidence 66777777777777777777777666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH--------------------------
Q 004249 210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF-------------------------- 263 (765)
Q Consensus 210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------------------------- 263 (765)
++|+..|+++++..|++..++..+|.++...|++++|+..+++++...|.....
T Consensus 380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666665544331
Q ss_pred ------HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH
Q 004249 264 ------GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE 337 (765)
Q Consensus 264 ------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 337 (765)
..+..+|.++...|++++|+..|++++.. .|....++..++.++...|++++|...+++++... |.+..
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 534 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI----EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLR 534 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHH
Confidence 13444555555555555555555555544 34444445555555555555555555555554443 44445
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004249 338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLL 417 (765)
Q Consensus 338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 417 (765)
++..++.++...|++++|+.++++++.. .|.+...+..++.++...|++++|+..+++++...|.++.++..++.++.
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5555555555555555555555555554 45555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHH
Q 004249 418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLL 497 (765)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~ 497 (765)
..|++++|+..++++++..|.. +.++..++.++...|++++|+..+.+++. ..|++...
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~ 671 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDS------------ALALLLLADAYAVMKNYAKAITSLKRALE---------LKPDNTEA 671 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------cCCCCHHH
Confidence 5555555555555555544443 34455566666666666666666666554 45566666
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHH
Q 004249 498 IIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKL 577 (765)
Q Consensus 498 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 577 (765)
+..++.++...|++++|..+++.+.... |.++.....++. ++...|++++|+..|++++...|++ ..+..++.+
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~ 745 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH----PKAALGFELEGD-LYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC----cCChHHHHHHHH-HHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHH
Confidence 6666666666666666666666666655 445555555555 8889999999999999999999988 556667777
Q ss_pred HhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccC
Q 004249 578 VSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQ 657 (765)
Q Consensus 578 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 657 (765)
+...|+. ..+...+.+.+...|+++..+..+|.++...|++++|+..|.++++..|+++.+...+|+++...+.
T Consensus 746 ~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----- 819 (899)
T TIGR02917 746 LLASGNT-AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----- 819 (899)
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-----
Confidence 7666654 6788888999999999999999999999999999999999999999999999999999998875442
Q ss_pred chhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHH
Q 004249 658 NKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRRE 737 (765)
Q Consensus 658 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 737 (765)
.+|+..+++...+.|+++.+++++|.++...|++++|+.+|+++++.+|.+ ++
T Consensus 820 ------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~---------------------~~ 872 (899)
T TIGR02917 820 ------PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA---------------------AA 872 (899)
T ss_pred ------HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------------hH
Confidence 348899999999999999999999999999999999999999999998843 78
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 004249 738 AAYNLHLIYKKSGAVDLARQVLRDHCT 764 (765)
Q Consensus 738 a~~nl~~iy~~~g~~~~A~~~l~k~l~ 764 (765)
+.++++.+|.+.|+++.|++++++.+.
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999999999999999999999873
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-49 Score=465.55 Aligned_cols=646 Identities=13% Similarity=0.094 Sum_probs=465.6
Q ss_pred HHHHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHH
Q 004249 52 EAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHIL 131 (765)
Q Consensus 52 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 131 (765)
..++..+...|++.++...+ ........+.....+...|..+...|++++|+..|++++..+|+++.++..+
T Consensus 94 ~~~a~~~~~~g~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 165 (899)
T TIGR02917 94 PLLARAYLLQGKFQQVLDEL--------PGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGL 165 (899)
T ss_pred HHHHHHHHHCCCHHHHHHhh--------cccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 33555566666666665544 1111112233445566778889999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249 132 GLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR 211 (765)
Q Consensus 132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 211 (765)
|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|++++..+|.++.++..++.++...|++++
T Consensus 166 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~ 245 (899)
T TIGR02917 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE 245 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249 212 AADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDL 291 (765)
Q Consensus 212 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 291 (765)
|...++++++..|+++.+++..|.++...|++++|+..++++++..|+... .+..+|.++...|++++|+..+.+++.
T Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~ 323 (899)
T TIGR02917 246 AEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLP--ALLLAGASEYQLGNLEQAYQYLNQILK 323 (899)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999988888888899999999999999999999998888765 566888888899999999999998888
Q ss_pred HhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC
Q 004249 292 VYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND 371 (765)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 371 (765)
. .|........++.++...|++++|+..+..++... +.++..+..+|.++...|++++|+.+|++++.. .|++
T Consensus 324 ~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 396 (899)
T TIGR02917 324 Y----APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPEN 396 (899)
T ss_pred h----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 7 55566677777888888888888888888876655 666777888888888888888888888888877 7777
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhh
Q 004249 372 GCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLN 451 (765)
Q Consensus 372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (765)
+.++..+|.++...|++++|+..++++++..|........++..+...|++++|+..+++.....|..
T Consensus 397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 464 (899)
T TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN------------ 464 (899)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------
Confidence 88888888888888888888888877777776666555556666666666666666665555444433
Q ss_pred hHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccc-------------------------ccccChhhHHHHHHHHHHHHH
Q 004249 452 IRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQ-------------------------EETFNHEEHRLLIIDLCKTLA 506 (765)
Q Consensus 452 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l-------------------------~~~~~~~~~~~~~~~l~~~~~ 506 (765)
+.++..+|.++...|++++|+..+.+++...... ..+-..|.+..++..++.++.
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 2344445555555555555555554444300000 000033444555555555555
Q ss_pred hhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhh
Q 004249 507 SLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFS 586 (765)
Q Consensus 507 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 586 (765)
..|++++|..++++++... |.+......++. ++...|++++|+..+++++...|.++..|..++.++...++. +
T Consensus 545 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 618 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELN----PQEIEPALALAQ-YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL-N 618 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC----ccchhHHHHHHH-HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-H
Confidence 5555555555555555544 333333333333 555566666666666666666666666666666655554443 4
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHH
Q 004249 587 KHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQG 666 (765)
Q Consensus 587 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a 666 (765)
.+...+.+.++..|.++..+..+|.++...|++++|+..|.++++.+|+++.....++.++...+ ...+|
T Consensus 619 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~A 688 (899)
T TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK----------RTESA 688 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----------CHHHH
Confidence 55555666666666666666666666666666666666666666666666666555555554332 23566
Q ss_pred HHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHH
Q 004249 667 LAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIY 746 (765)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy 746 (765)
+.++....+..|.++.++..+|.++...|++++|+..|++++...|+ ..+.++++.+|
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----------------------~~~~~~l~~~~ 746 (899)
T TIGR02917 689 KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS----------------------SQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----------------------chHHHHHHHHH
Confidence 77777777777778888888888888888888888888888888763 15678899999
Q ss_pred HhcCCHHHHHHHHHhhcC
Q 004249 747 KKSGAVDLARQVLRDHCT 764 (765)
Q Consensus 747 ~~~g~~~~A~~~l~k~l~ 764 (765)
...|++++|.+.+++++.
T Consensus 747 ~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999988763
No 4
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.9e-45 Score=427.88 Aligned_cols=625 Identities=13% Similarity=0.064 Sum_probs=498.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH-------
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW------- 162 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~------- 162 (765)
....++.++......++.+.|.+.+++++.++|+++.++..++.++...|+.++|.+.++++++++|+++.++
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 4566899999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ---------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004249 163 ---------KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKL-KFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM 232 (765)
Q Consensus 163 ---------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 232 (765)
..+|.++...|++++|+..|++++..+|.+... ...+..+....|++++|+..|+++++.+|+++.++..
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~ 186 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNT 186 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 556778999999999999999999998887643 2223333344699999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC----------------
Q 004249 233 GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG---------------- 296 (765)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------- 296 (765)
+|.++...|++++|+..+++++...+.... ............+....++..+...+..++..
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~--aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDA--AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHH--HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 999999999999999999999875443221 10011111111222333333333333332111
Q ss_pred CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH---
Q 004249 297 KELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC--- 373 (765)
Q Consensus 297 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--- 373 (765)
...+.......|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+.+|++++.. .|++..
T Consensus 265 ~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~--~p~~~~~~~ 341 (1157)
T PRK11447 265 LADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALAL--DPHSSNRDK 341 (1157)
T ss_pred ccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCccchhH
Confidence 11222222355888999999999999999999877 888999999999999999999999999999998 676532
Q ss_pred -----------HHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCc
Q 004249 374 -----------LHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNS 442 (765)
Q Consensus 374 -----------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 442 (765)
....+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|++.|++++..+|..
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~--- 418 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN--- 418 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---
Confidence 223558889999999999999999999999999999999999999999999999999999998887
Q ss_pred ccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcc-cccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 004249 443 DKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSH-QEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLI 521 (765)
Q Consensus 443 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 521 (765)
..++..++.++.. ++.++|+..+..+...... ... ....-....+..+|.++...|++++|+..|+++
T Consensus 419 ---------~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~~~~~~-~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A 487 (1157)
T PRK11447 419 ---------TNAVRGLANLYRQ-QSPEKALAFIASLSASQRRSIDD-IERSLQNDRLAQQAEALENQGKWAQAAELQRQR 487 (1157)
T ss_pred ---------HHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHHHHHH-HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4667778888754 5688888776543321000 000 000111345677899999999999999999999
Q ss_pred HHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHH---------
Q 004249 522 LKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLL--------- 592 (765)
Q Consensus 522 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~--------- 592 (765)
+++. |+++...+.++. ++...|++++|+..+++++..+|+++..+..++.++...++. ..+...+
T Consensus 488 l~~~----P~~~~~~~~LA~-~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~-~~Al~~l~~l~~~~~~ 561 (1157)
T PRK11447 488 LALD----PGSVWLTYRLAQ-DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRD-RAALAHLNTLPRAQWN 561 (1157)
T ss_pred HHhC----CCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHhCCchhcC
Confidence 9998 777877777777 999999999999999999999999998877665544332221 1111111
Q ss_pred -------------------------------HHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHH
Q 004249 593 -------------------------------RNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINL 641 (765)
Q Consensus 593 -------------------------------~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 641 (765)
...+...|.++..+..+|.++...|++++|+..|.++++.+|+++.+.+
T Consensus 562 ~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~ 641 (1157)
T PRK11447 562 SNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL 641 (1157)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 1234468899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCC
Q 004249 642 CVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFP 721 (765)
Q Consensus 642 ~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~ 721 (765)
.++.++...+. ..+|+..+.+.....|++..++..+|+++...|++++|+..|+++++..|++.
T Consensus 642 ~la~~~~~~g~----------~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~------ 705 (1157)
T PRK11447 642 GLIEVDIAQGD----------LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP------ 705 (1157)
T ss_pred HHHHHHHHCCC----------HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC------
Confidence 99998876542 45788888888888999999999999999999999999999999999887431
Q ss_pred CCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 004249 722 DHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCT 764 (765)
Q Consensus 722 ~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l~ 764 (765)
...-.+.+...+|.+|...|++++|+..+++++.
T Consensus 706 ---------~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 706 ---------PSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ---------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1111345667789999999999999999999873
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-47 Score=371.55 Aligned_cols=453 Identities=17% Similarity=0.130 Sum_probs=435.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249 94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173 (765)
Q Consensus 94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 173 (765)
.+..|...++.|+|.+|++....+...+|.+.+....++.++++..+++.....-..+++..|...+++.++|.++...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY 253 (765)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 253 (765)
++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++...|+..+|..+|.++
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCC
Q 004249 254 LKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVS 333 (765)
Q Consensus 254 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 333 (765)
++..|.... +|.++|.++...|+...|+..|++++++ +|....+++++|.+|...+.++.|+.+|.+++... |
T Consensus 211 i~~qp~fAi--awsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 211 IETQPCFAI--AWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HhhCCceee--eehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 999998876 7889999999999999999999999999 89999999999999999999999999999998776 8
Q ss_pred ChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004249 334 DHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA 413 (765)
Q Consensus 334 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 413 (765)
.+..++.++|.+|..+|..+-|+..|++++++ .|+.+.++.++|.++...|+..+|..+|.+++.+.|..+++...||
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249 414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE 493 (765)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 493 (765)
.++.++|++++|..+|.++++..|.- ..+...+|.+|.++|++++|+..|..++. ..|.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~p~~------------aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---------I~P~ 420 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVFPEF------------AAAHNNLASIYKQQGNLDDAIMCYKEALR---------IKPT 420 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhChhh------------hhhhhhHHHHHHhcccHHHHHHHHHHHHh---------cCch
Confidence 99999999999999999999998887 67889999999999999999999999997 8899
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHH
Q 004249 494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNR 573 (765)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 573 (765)
-.+++.++|.+|..+|+.+.|+..|.+++..+ |.-..+...++. ++...|+..+|+..|+.++++.|+.+.++.+
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n----Pt~AeAhsNLas-i~kDsGni~~AI~sY~~aLklkPDfpdA~cN 495 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN----PTFAEAHSNLAS-IYKDSGNIPEAIQSYRTALKLKPDFPDAYCN 495 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC----cHHHHHHhhHHH-HhhccCCcHHHHHHHHHHHccCCCCchhhhH
Confidence 99999999999999999999999999999999 777777777777 9999999999999999999999999999998
Q ss_pred HHHHHhhh
Q 004249 574 YYKLVSRF 581 (765)
Q Consensus 574 ~~~~~~~~ 581 (765)
+...+.-.
T Consensus 496 llh~lq~v 503 (966)
T KOG4626|consen 496 LLHCLQIV 503 (966)
T ss_pred HHHHHHHH
Confidence 87776543
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-44 Score=352.74 Aligned_cols=434 Identities=16% Similarity=0.150 Sum_probs=405.5
Q ss_pred HHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHH
Q 004249 54 IIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGL 133 (765)
Q Consensus 54 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 133 (765)
++--..+.|+++++.+.-.-+ -...+.+...++..+..+++..+++.....-..+++.+|...+++..+|.
T Consensus 54 lah~~yq~gd~~~a~~h~nmv---------~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMV---------GQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLAN 124 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHh---------hccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence 445566788888877543111 11112222334444577899999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q 004249 134 VHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAA 213 (765)
Q Consensus 134 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 213 (765)
++...|+++.|+..|+.+++++|+..++|.++|.++...|+.+.|..+|..+++++|....+...+|.++...|+..+|.
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 004249 214 DVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVY 293 (765)
Q Consensus 214 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 293 (765)
.+|.++++..|....+|.+||.++..+|+...|+..|++++.++|...+ +|.++|.+|...+.++.|+..|.+++..
T Consensus 205 ~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d--AYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 205 ACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD--AYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH--HHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 9999999999999999999999999999999999999999999999988 7889999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH
Q 004249 294 YSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC 373 (765)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 373 (765)
.|....++.++|.+|..+|..+-|+..|++++... |..++++.++|..+...|+..+|..+|.+++.+ .|+.++
T Consensus 282 ---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~had 355 (966)
T KOG4626|consen 282 ---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHAD 355 (966)
T ss_pred ---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHH
Confidence 88899999999999999999999999999999877 899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhH
Q 004249 374 LHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIR 453 (765)
Q Consensus 374 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (765)
+..+||.+|..+|.+++|...|.++++..|+...++..||.+|.++|++++|+..|++++.+.|.. ..
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f------------Ad 423 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF------------AD 423 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH------------HH
Confidence 999999999999999999999999999999999999999999999999999999999999999987 78
Q ss_pred HHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249 454 IKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGY 526 (765)
Q Consensus 454 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 526 (765)
++..+|..|..+|+.+.|++.+.+++. .+|.-.+++.+||.+|...|+..+|+..|+.++++.|
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~---------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQ---------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHh---------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 899999999999999999999999997 8899999999999999999999999999999999993
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.2e-40 Score=387.96 Aligned_cols=583 Identities=13% Similarity=0.051 Sum_probs=464.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHH----------------HHHHHHHHHcCCHHHHHHHHHHHhccC
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSY----------------HILGLVHDALGNTAKAMGCYWLAACYK 155 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~a~~~~ 155 (765)
..+...+.++...|++++|...++++++.+|+++.++ ..+|.++...|++++|+..|++++..+
T Consensus 63 ~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~ 142 (1157)
T PRK11447 63 DVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA 142 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC
Confidence 3456677889999999999999999999999998753 566778999999999999999999998
Q ss_pred CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249 156 QKDSSL-WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA 234 (765)
Q Consensus 156 p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 234 (765)
|.+... ...+..+....|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...+....+.....
T Consensus 143 p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~ 222 (1157)
T PRK11447 143 PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWY 222 (1157)
T ss_pred CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 887642 2233334445699999999999999999999999999999999999999999999999876544322211111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCH------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Q 004249 235 KLYQKSGQIESSVDILEDYLKGHPTEADF------------------GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG 296 (765)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 296 (765)
......+....++..+...+...|+.... .....+|.++...|++++|+..|++++..
T Consensus 223 ~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~---- 298 (1157)
T PRK11447 223 GQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA---- 298 (1157)
T ss_pred HHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 11122233444444444444444433210 01235688999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH--------------HHHHHHHHHHccccHHHHHHHHHHH
Q 004249 297 KELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE--------------SINEIADLFKNRELYSTALKYYHML 362 (765)
Q Consensus 297 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~~ 362 (765)
.|....++..+|.++...|++++|+..|++++... |.+.. ....+|.++...|++++|+..|+++
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALD-PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77788999999999999999999999999998766 33221 2234578889999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCc
Q 004249 363 EANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNS 442 (765)
Q Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 442 (765)
+.. .|+++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++. .++.++|+.+++......+....
T Consensus 378 l~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~- 453 (1157)
T PRK11447 378 RQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID- 453 (1157)
T ss_pred HHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH-
Confidence 999 89999999999999999999999999999999999999999999999985 46789999998776543322100
Q ss_pred ccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 004249 443 DKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLIL 522 (765)
Q Consensus 443 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 522 (765)
..........+..+|.++...|++++|+..+.+++. .+|+++.++..+|.++...|++++|+..+++++
T Consensus 454 --~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~---------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 454 --DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA---------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred --HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000011124566789999999999999999999997 788999999999999999999999999999999
Q ss_pred HhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHH----------------------------------------HH
Q 004249 523 KLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFM----------------------------------------VK 562 (765)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~----------------------------------------l~ 562 (765)
... |.++...+..+. ++...+++++|+..++++ ++
T Consensus 523 ~~~----P~~~~~~~a~al-~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 523 QQK----PNDPEQVYAYGL-YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HcC----CCCHHHHHHHHH-HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 887 555555444433 344445554444443321 23
Q ss_pred hCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHH
Q 004249 563 LHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLC 642 (765)
Q Consensus 563 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 642 (765)
..|.++..+..++.++...++. +.+...+.+++...|+++.++..+|.++...|++++|+..|.+++...|+++.+...
T Consensus 598 ~~p~~~~~~~~La~~~~~~g~~-~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~ 676 (1157)
T PRK11447 598 QQPPSTRIDLTLADWAQQRGDY-AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR 676 (1157)
T ss_pred hCCCCchHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 5788888888888888777775 688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCc------hHHHhHHHHHHHhchHHHHHHHHHHHHhh
Q 004249 643 VGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQ------EALYNIARAYHHVGLVSLAASYYEKVLAM 710 (765)
Q Consensus 643 l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~lg~~~~~~g~~~~A~~~y~k~l~~ 710 (765)
+|.++...+ ...+|+..+++.....|+.+ .++..+|+++...|++++|+..|++++..
T Consensus 677 la~~~~~~g----------~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 677 VALAWAALG----------DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred HHHHHHhCC----------CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 998887433 24678888888877655432 46778899999999999999999999973
No 8
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-40 Score=342.04 Aligned_cols=607 Identities=14% Similarity=0.108 Sum_probs=507.0
Q ss_pred CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCH--HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNT--AKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLS 183 (765)
Q Consensus 106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 183 (765)
.+..|..+|..+-.++-.....+...+..+...|.. +.|...|..+++..|++..+++..|.+.+..|+|..|+.+|+
T Consensus 109 ~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk 188 (1018)
T KOG2002|consen 109 LFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYK 188 (1018)
T ss_pred HHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHH
Confidence 456777888888777776666666667777777765 999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Q 004249 184 EAVKADPND-FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ---IESSVDILEDYLKGHPT 259 (765)
Q Consensus 184 ~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~ 259 (765)
+++.++|.. ++....+|.|+..+|+.+.|+..|.++++++|.++.++..||.+-....+ +..++..+.++...+|.
T Consensus 189 ~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~ 268 (1018)
T KOG2002|consen 189 KALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE 268 (1018)
T ss_pred HHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC
Confidence 999999854 57788999999999999999999999999999999999999988776554 67899999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHH
Q 004249 260 EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESI 339 (765)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 339 (765)
+|. ++..++..++..|+|..+..+...++.. ....+.....++.+|.++..+|++++|..+|..++...+....-.+
T Consensus 269 nP~--~l~~LAn~fyfK~dy~~v~~la~~ai~~-t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 269 NPV--ALNHLANHFYFKKDYERVWHLAEHAIKN-TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred CcH--HHHHHHHHHhhcccHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 998 7889999999999999999999999887 2234456677999999999999999999999999887744447789
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249 340 NEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALK----EREKSIIYFYKALQILEDNIDARLTLASL 415 (765)
Q Consensus 340 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 415 (765)
+.+|+.++..|+++.|..+|++++.. .|++.++...+|.+|...+ ..+.|..++.++++..|.+.++|..++.+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999886 57899999999999999999999999999
Q ss_pred HHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccC-h---
Q 004249 416 LLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFN-H--- 491 (765)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~-~--- 491 (765)
+.... ...++..|..+++.-.....+ ..+.+...+|..++..|.+.+|...+..+.....+ +.. +
T Consensus 424 ~e~~d-~~~sL~~~~~A~d~L~~~~~~-------ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~---~~n~de~~ 492 (1018)
T KOG2002|consen 424 LEQTD-PWASLDAYGNALDILESKGKQ-------IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE---VANKDEGK 492 (1018)
T ss_pred HHhcC-hHHHHHHHHHHHHHHHHcCCC-------CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh---hcCccccc
Confidence 97554 444477776665321111000 12477889999999999999999999988753110 000 0
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhh
Q 004249 492 EEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTW 571 (765)
Q Consensus 492 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 571 (765)
..+....+++|.++...++++.|.+.|..++..+ |.-......++. +....++..+|...++.++..+..++.+|
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh----p~YId~ylRl~~-ma~~k~~~~ea~~~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEH----PGYIDAYLRLGC-MARDKNNLYEASLLLKDALNIDSSNPNAR 567 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC----chhHHHHHHhhH-HHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence 1224468899999999999999999999999988 555555555555 66778999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHhcC--CCCCchhhhhhhhhh------------hhhHHHHHHHHHHHHhhCCCCh
Q 004249 572 NRYYKLVSRFEKIFSKHAKLLRNVRAKYR--DFVPPIIISGHQFTM------------ISHHQDAAREYLEAYKLLPENP 637 (765)
Q Consensus 572 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~~g~~~~~------------~~~~~~A~~~~~~a~~~~p~~~ 637 (765)
..++.+.....+. ..+.+-+...+++.. .++..++.+|++++. .+.+.+|+..|.+++..+|.|.
T Consensus 568 sl~G~~~l~k~~~-~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEW-KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHhhhhh-cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 9999666543332 355554544444422 345667899998765 4789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCC
Q 004249 638 LINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCII 717 (765)
Q Consensus 638 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~ 717 (765)
.+.+.+|+++.+.+. +..|..+|.+-++...+...++.|+|+||...|++..||+.|+.++...-+
T Consensus 647 yAANGIgiVLA~kg~----------~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~---- 712 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGR----------FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK---- 712 (1018)
T ss_pred hhccchhhhhhhccC----------chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 999999999876652 457888888888877788899999999999999999999999999998642
Q ss_pred CCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 004249 718 PGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHC 763 (765)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l 763 (765)
.-+.++...||.+++..|.+.+|.+.+.+.+
T Consensus 713 ---------------~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 713 ---------------KNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred ---------------cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1357999999999999999999999988764
No 9
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-39 Score=334.47 Aligned_cols=567 Identities=16% Similarity=0.122 Sum_probs=494.6
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 004249 87 VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL-PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLI 165 (765)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 165 (765)
.++++..++++|.+.+..|+|..|+.+|++++.++|.. ++....+|.|+.++|+.+.|+..|.++++++|.+..++..|
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 35678899999999999999999999999999999965 57889999999999999999999999999999999999999
Q ss_pred HHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 004249 166 FPWLIEQGD---TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN---IEALKMGAKLYQK 239 (765)
Q Consensus 166 a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~ 239 (765)
|.+-....+ +..++..+.++...+|.+|.++..|+..++-.|+|..+..+...++...... .+.++.+|..|..
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 988766554 6789999999999999999999999999999999999999999998866333 4569999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC----
Q 004249 240 SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLG---- 315 (765)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 315 (765)
+|++++|..+|.+++..+|++... .++.+|++++..|+++.|+.+|++++.. .|........+|.+|...+
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l-~~~GlgQm~i~~~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVL-PLVGLGQMYIKRGDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccc-cccchhHHHHHhchHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhhhH
Confidence 999999999999999999998432 4679999999999999999999999999 7888999999999998886
Q ss_pred ChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHHhccHHHHH
Q 004249 316 NTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN---AGVHNDGCLHLKIAECSLALKEREKSI 392 (765)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~ 392 (765)
..+.|..++.+++... |.+.++|..++.++....-+.. +..|..++.+ ...+--++.+.++|..++..|++.+|.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 6788888999988776 8889999999999877655544 8888888743 114456789999999999999999999
Q ss_pred HHHHHHHHH-----cCCC-----HHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHH
Q 004249 393 IYFYKALQI-----LEDN-----IDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIY 462 (765)
Q Consensus 393 ~~~~~al~~-----~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (765)
..|..++.. +++. ....+++++++...++++.|.+.|..++...|.. +..+..++.+.
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y------------Id~ylRl~~ma 540 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY------------IDAYLRLGCMA 540 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh------------HHHHHHhhHHH
Confidence 999999987 1221 2358899999999999999999999999988887 67788888888
Q ss_pred HhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhh
Q 004249 463 KAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQ 542 (765)
Q Consensus 463 ~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 542 (765)
...+...+|...+..++. .+..++.++..+|..+.....+..|.+-|+..++.... ..++..+..+|.
T Consensus 541 ~~k~~~~ea~~~lk~~l~---------~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~--~~D~YsliaLGN- 608 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALN---------IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST--KTDAYSLIALGN- 608 (1018)
T ss_pred HhccCcHHHHHHHHHHHh---------cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc--CCchhHHHHhhH-
Confidence 889999999999998886 66788999999999999999999999988888875532 256666766766
Q ss_pred cccc------------cCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhh
Q 004249 543 IPCN------------TTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISG 610 (765)
Q Consensus 543 ~~~~------------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g 610 (765)
+++. .+.+++|++.|.++|+.+|.|..+-+.++.++...+.. +.+...|.++.+...+....++.+|
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~-~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRF-SEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCc-hHHHHHHHHHHHHHhhCCceeeeHH
Confidence 4443 46678999999999999999999999999998876665 6888999999888888899999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHH
Q 004249 611 HQFTMISHHQDAAREYLEAYKLL--PENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIA 688 (765)
Q Consensus 611 ~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg 688 (765)
++|..+|+|..|++.|+.+++.. .+++.+..+||.+|+..+. ..++...+.++..+.|.+..+.||+|
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~----------~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK----------LQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHhCCccchHHhHHH
Confidence 99999999999999999999754 4568999999999998774 45778888889999999999999999
Q ss_pred HHHHHhc
Q 004249 689 RAYHHVG 695 (765)
Q Consensus 689 ~~~~~~g 695 (765)
-+..+++
T Consensus 758 ~v~kkla 764 (1018)
T KOG2002|consen 758 LVLKKLA 764 (1018)
T ss_pred HHHHHHH
Confidence 9888764
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=346.69 Aligned_cols=596 Identities=10% Similarity=-0.028 Sum_probs=466.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
.+...+..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|.+...+..++.+
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 4556788899999999999999999999999999999999999999999999999999999999999999888888766
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL--------YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 241 (765)
+++.+|+..|++++..+|++.+++..++.. |.+.++..+++. .+.+...|........++.+|..+|
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 666666666665 4444444445556667799999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004249 242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ-MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA 320 (765)
Q Consensus 242 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 320 (765)
++++|+..+.++++..|.+.. .+..++.+|.. +++ +++..+++. . ......++..++..+...|+.++|
T Consensus 197 dw~~Ai~lL~~L~k~~pl~~~--~~~~L~~ay~q~l~~-~~a~al~~~---~----lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 197 QWSQADTLYNEARQQNTLSAA--ERRQWFDVLLAGQLD-DRLLALQSQ---G----IFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhhCH-HHHHHHhch---h----cccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998866 56689999988 477 777777553 2 225778888999999999999999
Q ss_pred HHHHHhhcccC--CCChHH-----------------------------HHHHHHHHHHccccHHHHHHHHHHHHhccCCC
Q 004249 321 EILLTAIHWEN--VSDHAE-----------------------------SINEIADLFKNRELYSTALKYYHMLEANAGVH 369 (765)
Q Consensus 321 ~~~~~~~~~~~--~~~~~~-----------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 369 (765)
...+++.-... .|.+.. ....++..+...++++-+.++ +.. .|
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~ 340 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL----LAT--LP 340 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH----hcC--CC
Confidence 99998853221 122222 222234556667777755433 333 56
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhh
Q 004249 370 NDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWW 449 (765)
Q Consensus 370 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 449 (765)
.++. ...........+.+.+|....+...+..|.+.++...++....+.|+.++|..+|+++.....+. .
T Consensus 341 ~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-------- 410 (987)
T PRK09782 341 ANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA-R-------- 410 (987)
T ss_pred cchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc-c--------
Confidence 6654 22222233445778888888888888889999999999999999999999999999999863332 0
Q ss_pred hhhHHHHHHHHHHHhcch---hHHHHHh----------------------hHHHHhhhcccccccChhh--HHHHHHHHH
Q 004249 450 LNIRIKIKLCRIYKAKGM---IEGFVDM----------------------LLPLVCESSHQEETFNHEE--HRLLIIDLC 502 (765)
Q Consensus 450 ~~~~~~~~~a~~~~~~~~---~~~A~~~----------------------~~~~~~~~~~l~~~~~~~~--~~~~~~~l~ 502 (765)
....+...++.+|...+. ..+++.. +.... ..+-..|. ++.++..+|
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~al~~~p~~~~~~a~~~LG 484 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV------RLLGDMSPSYDAAAWNRLA 484 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH------HhcccCCCCCCHHHHHHHH
Confidence 011233366666666655 2222211 11111 11115577 889999999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhh
Q 004249 503 KTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFE 582 (765)
Q Consensus 503 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 582 (765)
.++.. +++++|+..+.+++... |+... ...++. ++...|++++|+..|++++...|.+ ..+...+.++...|
T Consensus 485 ~~l~~-~~~~eAi~a~~~Al~~~----Pd~~~-~L~lA~-al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~G 556 (987)
T PRK09782 485 KCYRD-TLPGVALYAWLQAEQRQ----PDAWQ-HRAVAY-QAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAG 556 (987)
T ss_pred HHHHh-CCcHHHHHHHHHHHHhC----CchHH-HHHHHH-HHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCC
Confidence 99987 89999999999999888 44332 222333 5578999999999999988775654 45666676766666
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHH
Q 004249 583 KIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQC 662 (765)
Q Consensus 583 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 662 (765)
+. ..+..++.+.+...|........++......|++++|+..|.++++.+|+ +.+...+|.++...+ .
T Consensus 557 d~-~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG----------~ 624 (987)
T PRK09782 557 NG-AARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH----------N 624 (987)
T ss_pred CH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC----------C
Confidence 55 57888888888888877655555555555669999999999999999996 888888888877554 2
Q ss_pred HHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHH
Q 004249 663 VAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNL 742 (765)
Q Consensus 663 ~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl 742 (765)
..+|+..+.+...+.|++..+++++|.++...|++++|+..|+++++.+|++ +++.+|+
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~---------------------~~a~~nL 683 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD---------------------PALIRQL 683 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------------HHHHHHH
Confidence 5789999999999999999999999999999999999999999999999954 7899999
Q ss_pred HHHHHhcCCHHHHHHHHHhhcC
Q 004249 743 HLIYKKSGAVDLARQVLRDHCT 764 (765)
Q Consensus 743 ~~iy~~~g~~~~A~~~l~k~l~ 764 (765)
|.+|...|+++.|+..+++.+.
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999999864
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=5.3e-35 Score=325.49 Aligned_cols=621 Identities=10% Similarity=-0.019 Sum_probs=470.7
Q ss_pred HHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHH
Q 004249 54 IIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGL 133 (765)
Q Consensus 54 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 133 (765)
.+.....+|+++++...+ .. .....|.++. ..+..+..++..|++++|+..++++++.+|.+...+..++.
T Consensus 50 ~a~~~~~~Gd~~~A~~~l---~~----Al~~dP~n~~--~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~ 120 (987)
T PRK09782 50 KALKAQKNNDEATAIREF---EY----IHQQVPDNIP--LTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAA 120 (987)
T ss_pred HHHHHHhCCCHHHHHHHH---HH----HHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 445555668888777666 11 1122233333 34777889999999999999999999999999888888876
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 134 VHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW--------LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 134 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~--------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
+ +++++|+..|++++..+|++..++..++.. |.+.++..+++. .+.+..+|........++.+|..
T Consensus 121 i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 121 I----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred h----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHH
Confidence 6 999999999999999999999999999998 666655555555 33344344455566777999999
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249 206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK-SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK 284 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~ 284 (765)
+|++++|+..+.++++..|.+......++.+|.. +++ +++..+++..++ .++. ++..++..+...|+.++|..
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~--l~~ala~~yi~~G~~~~A~~ 268 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQ--SRITYATALAYRGEKARLQH 268 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHH--HHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999998 577 888888665333 3333 77799999999999999999
Q ss_pred HHHHHHHHhcCCCCccHHHH-----------------------------HHHHHHHHhcCChhHHHHHHHhhcccCCCCh
Q 004249 285 HIELVDLVYYSGKELLLALK-----------------------------IKAGICHIQLGNTDKAEILLTAIHWENVSDH 335 (765)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~-----------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 335 (765)
.+++....... .+.+.... ..++..+...++++-+..+ ..+ .|.+
T Consensus 269 ~L~~~~~~~~~-~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~ 342 (987)
T PRK09782 269 YLIENKPLFTT-DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL-LAT----LPAN 342 (987)
T ss_pred HHHhCcccccC-CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH-hcC----CCcc
Confidence 99886544221 12222222 2224455666666644443 222 2333
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC---HHHHHHH
Q 004249 336 AESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDN---IDARLTL 412 (765)
Q Consensus 336 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 412 (765)
+. ...........+.+.+|...+..+... .|.+...+..++......|+.++|...|+.+....++. ......+
T Consensus 343 ~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 343 EM-LEERYAVSVATRNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred hH-HHHHHhhccccCchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 32 222222335668888888888888777 79999999999999999999999999999999863222 2344478
Q ss_pred HHHHHHcCC---HHHHHHhcC-------------------------CCCCccccccCcccchhhhhhhHHHHHHHHHHHh
Q 004249 413 ASLLLEDAK---DEEAISLLT-------------------------PPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA 464 (765)
Q Consensus 413 ~~~~~~~g~---~~~A~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (765)
+.+|...+. ...+..+.. .++...|. -....+++.+|.++..
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~----------~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSP----------SYDAAAWNRLAKCYRD 489 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCC----------CCCHHHHHHHHHHHHh
Confidence 999988876 444444422 11111122 0135788999999987
Q ss_pred cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcc
Q 004249 465 KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIP 544 (765)
Q Consensus 465 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 544 (765)
++..+|+..+.+++. ..|++. ....+|.++...|++++|+..|++++... |.+ .....++. ++
T Consensus 490 -~~~~eAi~a~~~Al~---------~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~----p~~-~a~~~la~-al 552 (987)
T PRK09782 490 -TLPGVALYAWLQAEQ---------RQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD----MSN-EDLLAAAN-TA 552 (987)
T ss_pred -CCcHHHHHHHHHHHH---------hCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC----CCc-HHHHHHHH-HH
Confidence 889999998988886 445544 35667777789999999999999987653 332 33445555 88
Q ss_pred cccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHH
Q 004249 545 CNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAR 624 (765)
Q Consensus 545 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 624 (765)
...|++++|..+|+++++..|++......+.......|+ +..+...+.+.+...|+ ...+..+|.++...|++++|+.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr-~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ-PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence 899999999999999999999886555443333322243 36889999999999996 7888999999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHH
Q 004249 625 EYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYY 704 (765)
Q Consensus 625 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y 704 (765)
.|.+++.++|+++.+..++|.++...+ ...+|+..+.+..++.|+++++++++|.++..+|++++|+.+|
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G----------~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSG----------DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999988654 2468899999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 004249 705 EKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCT 764 (765)
Q Consensus 705 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l~ 764 (765)
++++++.|++ ..+.+-.+++.....++..|.+.+.+..+
T Consensus 701 ~~Al~l~P~~---------------------a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 701 RLVIDDIDNQ---------------------ALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHhcCCCC---------------------chhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999964 45566677777777777777777766543
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.3e-34 Score=315.91 Aligned_cols=440 Identities=12% Similarity=0.003 Sum_probs=359.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE 171 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 171 (765)
..+..+|..++..|+|++|+..|++++...|+ +..+..+|.||..+|++++|+..+.++++++|++..++..+|.++..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999999996 78899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE 251 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (765)
+|++++|+..|..+...++.+......+..... ...+...+..+++..|.+...+..++..+. ......+...+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 281 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAGLE 281 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhhhh
Confidence 999999999998887776644433222221111 134556677777888887666666666543 233334444455
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhc
Q 004249 252 DYLKGHPTEADFGVIDLLASMLV---QMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIH 328 (765)
Q Consensus 252 ~~~~~~p~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 328 (765)
...+.++.... .+..++.... ..+.+++|+..|++++... ...+....++..+|.++...|++++|+..+++++
T Consensus 282 ~~~~~~~~~~~--~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 282 DSNELDEETGN--GQLQLGLKSPESKADESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred ccccccccccc--chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555444 3345554432 3478999999999999862 2235666788999999999999999999999998
Q ss_pred ccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHH
Q 004249 329 WENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDA 408 (765)
Q Consensus 329 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (765)
... |.....+..+|.++...|++++|+..|++++.. +|+++.+++.+|.++...|++++|+..|+++++++|++..+
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 876 788999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccc
Q 004249 409 RLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEET 488 (765)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~ 488 (765)
+..+|.++...|++++|+..+++++...|.. +.++..+|.++...|++++|+..|.+++.
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~~------------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~-------- 495 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEA------------PDVYNYYGELLLDQNKFDEAIEKFDTAIE-------- 495 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHccCHHHHHHHHHHHHh--------
Confidence 9999999999999999999999999988876 67888999999999999999999999986
Q ss_pred cChhhHH------HHHHHHHHHHH-hhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHH
Q 004249 489 FNHEEHR------LLIIDLCKTLA-SLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMV 561 (765)
Q Consensus 489 ~~~~~~~------~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 561 (765)
..|.+. ..+...+.++. ..|++++|+.++++++.+. |++...+..++. ++...|++++|+..|++++
T Consensus 496 -l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~----p~~~~a~~~la~-~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 496 -LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID----PECDIAVATMAQ-LLLQQGDVDEALKLFERAA 569 (615)
T ss_pred -cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC----CCcHHHHHHHHH-HHHHccCHHHHHHHHHHHH
Confidence 333221 12223333343 4799999999999999987 666666666666 9999999999999999999
Q ss_pred HhCCCchh
Q 004249 562 KLHPHRLT 569 (765)
Q Consensus 562 ~~~p~~~~ 569 (765)
++.+....
T Consensus 570 ~l~~~~~e 577 (615)
T TIGR00990 570 ELARTEGE 577 (615)
T ss_pred HHhccHHH
Confidence 99876544
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.6e-34 Score=315.59 Aligned_cols=444 Identities=14% Similarity=0.012 Sum_probs=355.8
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (765)
...+..+|..++..|++++|+..|.+++...|+ +..+..+|.+|..+|++++|+..++++++++|++..++..+|.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345778999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK 284 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~ 284 (765)
.+|++++|+..|..+....+.+......+...+.. ..+.......++..|.+.. .+..++..+. ......+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~--~~~~~~~~~~-~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLP--SVTFVGNYLQ-SFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCC--CHHHHHHHHH-HccCCcchh
Confidence 99999999999988877766554322222221111 3455666777777877765 3445555442 222222222
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHH---HhcCChhHHHHHHHhhcccC--CCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249 285 HIELVDLVYYSGKELLLALKIKAGICH---IQLGNTDKAEILLTAIHWEN--VSDHAESINEIADLFKNRELYSTALKYY 359 (765)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 359 (765)
.+...... .+.....+..++... ...+++++|+..|++++... .+....++..+|.++...|++++|+..|
T Consensus 279 ~~~~~~~~----~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 279 GLEDSNEL----DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhccccc----ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23333222 222233334444332 23478999999999998643 3667788999999999999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249 360 HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY 439 (765)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (765)
++++.+ +|..+..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.
T Consensus 355 ~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 355 SKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 999999 899999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 004249 440 VNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIIN 519 (765)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 519 (765)
..++..+|.++...|++++|+..+.+++. ..|.++.++..+|.++...|++++|+..|+
T Consensus 433 ------------~~~~~~la~~~~~~g~~~eA~~~~~~al~---------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 433 ------------IFSHIQLGVTQYKEGSIASSMATFRRCKK---------NFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred ------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------hCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 56788999999999999999999999986 678899999999999999999999999999
Q ss_pred HHHHhccCCCCch--HHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 004249 520 LILKLGYGKFPVE--KEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRA 597 (765)
Q Consensus 520 ~al~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 597 (765)
+++.+.|...+.. ...+...+..++...|++++|...+++++..+|++..+
T Consensus 492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a--------------------------- 544 (615)
T TIGR00990 492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIA--------------------------- 544 (615)
T ss_pred HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH---------------------------
Confidence 9999985422211 12233333323444799999999999999988876433
Q ss_pred hcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChH
Q 004249 598 KYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPL 638 (765)
Q Consensus 598 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 638 (765)
+..+|.++...|++++|+..|++++++.+....
T Consensus 545 --------~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 545 --------VATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred --------HHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 233578888899999999999999999887544
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.2e-29 Score=277.95 Aligned_cols=337 Identities=12% Similarity=-0.001 Sum_probs=314.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249 94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173 (765)
Q Consensus 94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 173 (765)
+..-+..+.+.|++++|+.+++.++...|.++.+++.+|.+....|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 34455778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY 253 (765)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 253 (765)
++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..++++
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARAL 203 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887664 478999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhH----HHHHHHhhcc
Q 004249 254 LKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDK----AEILLTAIHW 329 (765)
Q Consensus 254 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~ 329 (765)
+...|..... ....++.++...|++++|+..+++++.. .|....++..+|.++...|++++ |+..|++++.
T Consensus 204 l~~~~~~~~~-~~~~l~~~l~~~g~~~eA~~~~~~al~~----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 204 LPFFALERQE-SAGLAVDTLCAVGKYQEAIQTGESALAR----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HhcCCCcchh-HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9987644332 3456788999999999999999999998 67788999999999999999986 8999999988
Q ss_pred cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHH
Q 004249 330 ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR 409 (765)
Q Consensus 330 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 409 (765)
.. |+++.++..+|.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..|++++..+|.+...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 77 788999999999999999999999999999999 999999999999999999999999999999999999998878
Q ss_pred HHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249 410 LTLASLLLEDAKDEEAISLLTPPMSLENKY 439 (765)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (765)
..++.++...|++++|+..|++++...|+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 888999999999999999999999988876
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=8.6e-30 Score=285.41 Aligned_cols=436 Identities=13% Similarity=0.031 Sum_probs=313.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 004249 84 KKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWK 163 (765)
Q Consensus 84 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 163 (765)
..++++....-+. .++...|++++|+..+.++...+|....++..+|.++...|++++|+..|++++..+|.++.++.
T Consensus 10 ~~~~~~~~~~d~~--~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWL--QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred ccCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3444444333222 45778999999999999998888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249 164 LIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI 243 (765)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 243 (765)
.++.++...|++++|+..+++++...|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...|..
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCh---
Q 004249 244 ESSVDILEDYLKGHPTEADF---GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNT--- 317 (765)
Q Consensus 244 ~~A~~~~~~~~~~~p~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 317 (765)
++|+..++++.. .|+.... .....+..+....+ ....+++
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~---------------------------------~~~~~r~~~a 212 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPT---------------------------------RSEKERYAIA 212 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccc---------------------------------cChhHHHHHH
Confidence 999998887765 5542110 00001111111000 0011111
Q ss_pred hHHHHHHHhhccc---CCCC---hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHhccHHH
Q 004249 318 DKAEILLTAIHWE---NVSD---HAESINEIADLFKNRELYSTALKYYHMLEANAGVHND-GCLHLKIAECSLALKEREK 390 (765)
Q Consensus 318 ~~A~~~~~~~~~~---~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~ 390 (765)
++|+..++.++.. .+.. ...+.......+...|++++|+..|++++.. .+.. ..+...+|.++...|++++
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~--~~~~P~~a~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE--GQIIPPWAQRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHhcCCcHH
Confidence 3444444444322 1111 1111222112234556677777777766655 2221 1223334666777777777
Q ss_pred HHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcc---cchhhhhhhHHHHHHHHHHH
Q 004249 391 SIIYFYKALQILEDN----IDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSD---KTHAWWLNIRIKIKLCRIYK 463 (765)
Q Consensus 391 A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~ 463 (765)
|+..|++++..+|.+ ......++.++.+.|++++|+..++++....|...... ...|......+...++.++.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 777777766666554 23455566666667777777777766666554320000 00000011356778999999
Q ss_pred hcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhc
Q 004249 464 AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQI 543 (765)
Q Consensus 464 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 543 (765)
..|++++|++.+.+++. ..|++..++..+|.++...|++++|++.+++++.+. |+++...+..+. +
T Consensus 371 ~~g~~~eA~~~l~~al~---------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~----Pd~~~l~~~~a~-~ 436 (765)
T PRK10049 371 YSNDLPQAEMRARELAY---------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE----PRNINLEVEQAW-T 436 (765)
T ss_pred HcCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCChHHHHHHHH-H
Confidence 99999999999999986 678999999999999999999999999999999998 788887777777 9
Q ss_pred ccccCChhhHHHHHHHHHHhCCCchhhhH
Q 004249 544 PCNTTDPKLWFDGVRFMVKLHPHRLTTWN 572 (765)
Q Consensus 544 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 572 (765)
+...|++++|...++++++..|+++.+..
T Consensus 437 al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999986644
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=1.9e-29 Score=282.68 Aligned_cols=370 Identities=12% Similarity=0.028 Sum_probs=293.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
...+...|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|+++. +..+|.++.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 3346677888999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH-----Hc
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE-----ALKMGAKLYQ-----KS 240 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~ 240 (765)
..|++++|+..++++++..|+++.++..++.++...|..+.|+..++++.. .|.... ....+..+.. ..
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 999999999999999999999999999999999999999999999998775 554311 1222223332 22
Q ss_pred CCH---HHHHHHHHHHHhcCCCCCCHH-----HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004249 241 GQI---ESSVDILEDYLKGHPTEADFG-----VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHI 312 (765)
Q Consensus 241 g~~---~~A~~~~~~~~~~~p~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 312 (765)
+++ ++|+..++.+++..|.++... +.......+...|++++|+..|++++.. . .+.+..+...++.++.
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-~--~~~P~~a~~~la~~yl 283 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-G--QIIPPWAQRWVASAYL 283 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-C--CCCCHHHHHHHHHHHH
Confidence 334 778889998887655554421 1111122346778899999999998776 1 1224445555688889
Q ss_pred hcCChhHHHHHHHhhcccCCCCh----HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC-------------CC--HH
Q 004249 313 QLGNTDKAEILLTAIHWENVSDH----AESINEIADLFKNRELYSTALKYYHMLEANAGVH-------------ND--GC 373 (765)
Q Consensus 313 ~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~--~~ 373 (765)
..|++++|+..|++++... |.+ ......++.++...|++++|+..++++... .| ++ ..
T Consensus 284 ~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred hcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCCCCCCCCchHHH
Confidence 9999999999999887654 333 355667777888889999999999888876 44 22 34
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhH
Q 004249 374 LHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIR 453 (765)
Q Consensus 374 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (765)
++..++.++...|++++|+..+++++...|.+..++..+|.++...|++++|++.+++++..+|+. ..
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~------------~~ 428 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN------------IN 428 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------------hH
Confidence 667788888888888888888888888888888888888888888888888888888888887776 56
Q ss_pred HHHHHHHHHHhcchhHHHHHhhHHHHh
Q 004249 454 IKIKLCRIYKAKGMIEGFVDMLLPLVC 480 (765)
Q Consensus 454 ~~~~~a~~~~~~~~~~~A~~~~~~~~~ 480 (765)
+++.+|.++...|++++|...+..++.
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677777777777777777777777775
No 17
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.8e-28 Score=275.80 Aligned_cols=620 Identities=12% Similarity=0.057 Sum_probs=451.3
Q ss_pred HHHHHHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC-CchHH
Q 004249 50 RFEAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEE-LPNSY 128 (765)
Q Consensus 50 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~ 128 (765)
.++.+...+...|+..++...+.++... ..+|+...+......+...+.++.|..++..+++..+. +....
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~--------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQEL--------RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 3455666778888888887666322221 22233333333334456677788888888777766553 23455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC---------------
Q 004249 129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA--DPN--------------- 191 (765)
Q Consensus 129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~--------------- 191 (765)
..+...|.+.|+.+.|...|.+... .+...|..+...|.+.|++++|+..|.++... .|+
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 5566667777888888877776643 34566777777788888888888888777643 232
Q ss_pred -------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 192 -------------------DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED 252 (765)
Q Consensus 192 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (765)
+..++..+...|.+.|+++.|...|+++.. .+...|..+...|.+.|++++|+.+|.+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 233456667777888888888888887643 3456677888888888888888888888
Q ss_pred HHhc--CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc
Q 004249 253 YLKG--HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE 330 (765)
Q Consensus 253 ~~~~--~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 330 (765)
+... .|+.. .+..+...+...|+.+.|.+++..+.+. ....+..++..+...|.+.|++++|.++|+++.
T Consensus 279 M~~~g~~Pd~~---ty~~ll~a~~~~g~~~~a~~l~~~~~~~---g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 350 (857)
T PLN03077 279 MRELSVDPDLM---TITSVISACELLGDERLGREMHGYVVKT---GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-- 350 (857)
T ss_pred HHHcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHh---CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--
Confidence 7664 34332 4667777888888888888888887765 133456677888888999999999999999874
Q ss_pred CCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcC-CCHHHH
Q 004249 331 NVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILE-DNIDAR 409 (765)
Q Consensus 331 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 409 (765)
..+...|..+...|.+.|++++|+.+|+++...+..|+. ..+..+-..+...|+++.|.+.+..+.+... .+..++
T Consensus 351 --~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred --CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 234667888999999999999999999988776545654 4555566688889999999999999888753 345677
Q ss_pred HHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccccccc
Q 004249 410 LTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETF 489 (765)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~ 489 (765)
..+...|.+.|+.++|.++|+++.+.+. ..|..+...|...|+.++|+..|.+++..
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~~d~---------------vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-------- 484 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPEKDV---------------ISWTSIIAGLRLNNRCFEALIFFRQMLLT-------- 484 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCe---------------eeHHHHHHHHHHCCCHHHHHHHHHHHHhC--------
Confidence 7899999999999999999998776332 34677888889999999999999888742
Q ss_pred ChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchh
Q 004249 490 NHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLT 569 (765)
Q Consensus 490 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 569 (765)
..| +...+..+-.++.+.|..+.+.+++..+++.... .+. ..+..+...|.+.|+.++|...|... +.+..
T Consensus 485 ~~p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~---~~~-~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~ 555 (857)
T PLN03077 485 LKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIG---FDG-FLPNALLDLYVRCGRMNYAWNQFNSH----EKDVV 555 (857)
T ss_pred CCC-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC---ccc-eechHHHHHHHHcCCHHHHHHHHHhc----CCChh
Confidence 223 4445666667888899999999999988886632 222 23334445888999999999999886 56788
Q ss_pred hhHHHHHHHhhhhhhhhHHHHHHHHHHHh--cCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCh--HHHHHHHH
Q 004249 570 TWNRYYKLVSRFEKIFSKHAKLLRNVRAK--YRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENP--LINLCVGT 645 (765)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l~~ 645 (765)
.|+.+...+...|+. +.+...+.+..+. .|+... +..+-..+...|..++|...|....+..+-.| ..+.++..
T Consensus 556 s~n~lI~~~~~~G~~-~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 556 SWNILLTGYVAHGKG-SMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999888876 6788888877654 454443 44444568889999999999998875433332 44555555
Q ss_pred HHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 004249 646 ALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHME 725 (765)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~ 725 (765)
.+...+ .+.+|..++++-. +.| +..++-.+-.++..-|+.+.|....++++++.|++
T Consensus 634 ~l~r~G----------~~~eA~~~~~~m~-~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~----------- 690 (857)
T PLN03077 634 LLGRAG----------KLTEAYNFINKMP-ITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS----------- 690 (857)
T ss_pred HHHhCC----------CHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----------
Confidence 554333 3567778877642 444 35677788888888999999999999999999854
Q ss_pred CCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 004249 726 DWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRD 761 (765)
Q Consensus 726 ~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k 761 (765)
...+..|+.+|...|++++|.++.+.
T Consensus 691 ----------~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 691 ----------VGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred ----------cchHHHHHHHHHHCCChHHHHHHHHH
Confidence 45677899999999999999998765
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=5.3e-29 Score=272.83 Aligned_cols=385 Identities=8% Similarity=-0.027 Sum_probs=330.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEE---ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT 175 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 175 (765)
..++++.+|+.-.-++...-+... ++..-....+..+...|++++|+..+...+...|.++.++..+|.+....|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 13 TTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCH
Confidence 456778888877766666544332 23344566777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004249 176 TWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255 (765)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 255 (765)
++|+..+++++..+|+++.++..+|.++...|++++|+..|++++...|+++.++..++.++...|++++|+..+++++.
T Consensus 93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCCh
Q 004249 256 GHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDH 335 (765)
Q Consensus 256 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 335 (765)
..|++.. .+..++ .+...|++++|+..+++++...+ .........++.++...|++++|+..+++++... |.+
T Consensus 173 ~~P~~~~--a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~---~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~ 245 (656)
T PRK15174 173 EVPPRGD--MIATCL-SFLNKSRLPEDHDLARALLPFFA---LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDG 245 (656)
T ss_pred hCCCCHH--HHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 9998776 444443 47889999999999999887722 1223344566788889999999999999998776 788
Q ss_pred HHHHHHHHHHHHccccHHH----HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHH
Q 004249 336 AESINEIADLFKNRELYST----ALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLT 411 (765)
Q Consensus 336 ~~~~~~la~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 411 (765)
+.++..+|.++...|++++ |+..|++++.. .|+++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999986 89999999998 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccCh
Q 004249 412 LASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNH 491 (765)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~ 491 (765)
++.++...|++++|+..++++...+|.. ......++.++...|++++|+..|.+++. ..
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~------------~~~~~~~a~al~~~G~~deA~~~l~~al~---------~~ 382 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVT------------SKWNRYAAAALLQAGKTSEAESVFEHYIQ---------AR 382 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccc------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------hC
Confidence 9999999999999999999998877765 34455678889999999999999998886 44
Q ss_pred hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 004249 492 EEHRLLIIDLCKTLASLHRYEDAIKIINLILKLG 525 (765)
Q Consensus 492 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 525 (765)
|++. ...+++|...+.+++...
T Consensus 383 P~~~------------~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 383 ASHL------------PQSFEEGLLALDGQISAV 404 (656)
T ss_pred hhhc------------hhhHHHHHHHHHHHHHhc
Confidence 5543 356678888888888766
No 19
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.97 E-value=4.8e-25 Score=218.32 Aligned_cols=554 Identities=12% Similarity=0.038 Sum_probs=408.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSE 184 (765)
Q Consensus 105 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 184 (765)
++..+|..+++.+.+.+|.+|..|..-+.+-...|++..|.....+..+..|.+.++|..-. ++...+.|..+.-.
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999888887643 33445556666666
Q ss_pred HHhcCCCCHHHHHHHHH---------------------------HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004249 185 AVKADPNDFKLKFHLAS---------------------------LYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY 237 (765)
Q Consensus 185 al~~~p~~~~~~~~la~---------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 237 (765)
++...|.++..|+.-+. ......+.+.|...+.++++..|.+.+.|..++++
T Consensus 341 Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlarL- 419 (913)
T KOG0495|consen 341 AVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALARL- 419 (913)
T ss_pred HHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHHH-
Confidence 66666665555433332 22334556667788888888888887777666554
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----------------------
Q 004249 238 QKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY----------------------- 294 (765)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------------- 294 (765)
.-|+.|...+.++-+.-|.++. +|..-+.+-...|+.+....++.+.+....
T Consensus 420 ---etYenAkkvLNkaRe~iptd~~--IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 420 ---ETYENAKKVLNKAREIIPTDRE--IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred ---HHHHHHHHHHHHHHhhCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 5688888899999888888887 777888888888888887777777654321
Q ss_pred ---------------CCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249 295 ---------------SGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYY 359 (765)
Q Consensus 295 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 359 (765)
....+....|..-+..+.+.+-++-|+.+|..+++.+ |....+|...+..-...|..++-..+|
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1122233344555556666777777777777777766 666777777777777778888888888
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249 360 HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY 439 (765)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (765)
++++.. .|.....|...+..+...|+...|...+..+++.+|++.++|+.-..+.....+++.|..+|.++....+..
T Consensus 574 qkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 888877 787778888888888888888888888888888888888888888888888888888888888888777766
Q ss_pred cCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 004249 440 VNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIIN 519 (765)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 519 (765)
++|+..+.+...+++.++|++.+..+++ ..|+....++.+|+++.++++.+.|...|.
T Consensus 652 -------------Rv~mKs~~~er~ld~~eeA~rllEe~lk---------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 652 -------------RVWMKSANLERYLDNVEEALRLLEEALK---------SFPDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred -------------hhhHHHhHHHHHhhhHHHHHHHHHHHHH---------hCCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888887776 667788888888888888888888888888
Q ss_pred HHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhc
Q 004249 520 LILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKY 599 (765)
Q Consensus 520 ~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 599 (765)
..++.+ |..+..+.. +..+-.+.|+.-.|...+.++.-.+|.+...|.....+-.+.|.. +.+...+.++++.+
T Consensus 710 ~G~k~c----P~~ipLWll-LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~-~~a~~lmakALQec 783 (913)
T KOG0495|consen 710 QGTKKC----PNSIPLWLL-LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK-EQAELLMAKALQEC 783 (913)
T ss_pred hccccC----CCCchHHHH-HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Confidence 888877 444333333 333777778888888888888888888888888877777777765 45566667778888
Q ss_pred CCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCC
Q 004249 600 RDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAEN 679 (765)
Q Consensus 600 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 679 (765)
|.+.-.+.-.-...-.-+. ...+..|++...+||-+.+.+|..+.... .+.++.+.|.+..++.|+
T Consensus 784 p~sg~LWaEaI~le~~~~r----kTks~DALkkce~dphVllaia~lfw~e~----------k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQR----KTKSIDALKKCEHDPHVLLAIAKLFWSEK----------KIEKAREWFERAVKKDPD 849 (913)
T ss_pred CccchhHHHHHHhccCccc----chHHHHHHHhccCCchhHHHHHHHHHHHH----------HHHHHHHHHHHHHccCCc
Confidence 8775443222121111222 22334456666677777777776665333 356777788888888887
Q ss_pred CchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249 680 SQEALYNIARAYHHVGLVSLAASYYEKVLAMYQK 713 (765)
Q Consensus 680 ~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~ 713 (765)
.-.++-++=+.+.+.|..+.-.+.|.+...-.|.
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 7777777777788888877888888887777764
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.97 E-value=1e-26 Score=254.12 Aligned_cols=461 Identities=11% Similarity=0.001 Sum_probs=368.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
.+...+.++.+.++.|+++.|+..|+++++.+|.++.+...++.++...|+.++|+.++++++...|........+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 44566788899999999999999999999999999655448888999999999999999999944455556666668899
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI 249 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 249 (765)
...|++++|+..|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++...++..+|+..
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986654 5667777678888789999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC------------Ch
Q 004249 250 LEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLG------------NT 317 (765)
Q Consensus 250 ~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~ 317 (765)
++++++.+|++.. ++..+..++...|-...|.+...+-...+.+. ....+....+.-..+.+ -.
T Consensus 192 ~ekll~~~P~n~e--~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~--~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 192 SSEAVRLAPTSEE--VLKNHLEILQRNRIVEPALRLAKENPNLVSAE--HYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHhCccccCHH--HHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999999988 67799999999999999998887654442211 00111111111111111 23
Q ss_pred hHHHHHHHhhcc---cCCCCh---HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249 318 DKAEILLTAIHW---ENVSDH---AESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKS 391 (765)
Q Consensus 318 ~~A~~~~~~~~~---~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 391 (765)
+.|+..++.++. ..++.. ..+....-.++...|++.+++..|+.+.... .+--+.+....|..|...+++++|
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~-~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG-YKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHhcCCcHHH
Confidence 456666666654 332222 2344455567788999999999999887653 233445777889999999999999
Q ss_pred HHHHHHHHHHcC------CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCcccccc-----CcccchhhhhhhHHHHHHHH
Q 004249 392 IIYFYKALQILE------DNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYV-----NSDKTHAWWLNIRIKIKLCR 460 (765)
Q Consensus 392 ~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~ 460 (765)
...|+.++...| .+......|...+...+++++|..++++..+..|... ....+++.|. .....++.
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l~a~ 424 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTLLVQ 424 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHHHHH
Confidence 999999988653 2334457789999999999999999999887655211 1134556665 56778899
Q ss_pred HHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004249 461 IYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLG 540 (765)
Q Consensus 461 ~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 540 (765)
++...|++.+|.+.+.+++. ..|.+..+.+.+|.++...|.+.+|...++.++.+. |.+.......+
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~---------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~----P~~~~~~~~~~ 491 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSS---------TAPANQNLRIALASIYLARDLPRKAEQELKAVESLA----PRSLILERAQA 491 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC----CccHHHHHHHH
Confidence 99999999999999999987 779999999999999999999999999999999887 77776666666
Q ss_pred hhcccccCChhhHHHHHHHHHHhCCCchhhhH
Q 004249 541 AQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWN 572 (765)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 572 (765)
. ++...|++.+|....+.++..+|++..+-.
T Consensus 492 ~-~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 492 E-TAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred H-HHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 6 889999999999999999999999986543
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-27 Score=226.57 Aligned_cols=413 Identities=11% Similarity=0.015 Sum_probs=320.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
...+-.+|+.+++.|+|++||.+|.+++...|+.+..|.+++-||...|++++.++...++++++|+...+++..+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34455779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCH----------------HHHHHHHHHHHHhCCCC-------
Q 004249 171 EQGDTTWAMSCLSEAVKAD-PNDFKLKFHLASLYVELGNF----------------QRAADVYRQMVQLCPEN------- 226 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~----------------~~A~~~~~~al~~~p~~------- 226 (765)
.+|++.+|+.-..-..-.. -.+......+-.++-.+|.- ..-+..|-....-+|..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 9999999987654332211 12222222222222222210 01122222222222111
Q ss_pred -HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCC-----C------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249 227 -IEALKMGAKLYQKS---GQIESSVDILEDYLKGHPTEA-----D------FGVIDLLASMLVQMNAYDRVLKHIELVDL 291 (765)
Q Consensus 227 -~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~-----~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 291 (765)
.++...-+.-+... ..|..|...+.+......... + ..++...|..++-.|++-.|...|+.++.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 11111111111122 257777777766543321111 1 33566778888888999999999999999
Q ss_pred HhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC
Q 004249 292 VYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND 371 (765)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 371 (765)
+ ++.....++.++.+|...++.++-...|.++...+ |.++++|+..|.+++-.+++++|+.-|++++.+ +|++
T Consensus 355 l----~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~ 427 (606)
T KOG0547|consen 355 L----DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPEN 427 (606)
T ss_pred c----CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Chhh
Confidence 9 67777779999999999999999999999998877 899999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhh
Q 004249 372 GCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLN 451 (765)
Q Consensus 372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (765)
...+..++.+..++++++++...|+.+.+..|..++++...|.++..+++|+.|++.|..++++.|.... .+.+
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~------~~v~ 501 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL------IIVN 501 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc------cccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999888311 0001
Q ss_pred hHHHHHHHHHHH-hcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 004249 452 IRIKIKLCRIYK-AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLG 525 (765)
Q Consensus 452 ~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 525 (765)
+..+...|.+.. =.+++..|++.+.+++. .+|....++..+|.+..++|+.++|+++|+++..+.
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e---------~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIE---------LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHc---------cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111222222211 23889999999999987 899999999999999999999999999999999877
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-27 Score=227.27 Aligned_cols=409 Identities=13% Similarity=0.061 Sum_probs=318.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
..+...|.-++..|+|++|+++|..++.+.|+.+..|.+++-||...|+|++.++...++++++|+...+++..+..+..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH-----------------HHHHHHhcCCC----CCCH
Q 004249 206 LGNFQRAADVYRQMVQLCP-ENIEALKMGAKLYQKSGQIESSVD-----------------ILEDYLKGHPT----EADF 263 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~-----------------~~~~~~~~~p~----~~~~ 263 (765)
+|++.+|+....-..-... .+......+-+++-.++. .++.+ .|-..+.-+|. +...
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 9999999877654322211 122222222222222221 11111 11111111111 0000
Q ss_pred HHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHhcCCCCcc---------HHHHHHHHHHHHhcCChhHHHHHHHhhcc
Q 004249 264 GVIDLLASMLV--QM---NAYDRVLKHIELVDLVYYSGKELL---------LALKIKAGICHIQLGNTDKAEILLTAIHW 329 (765)
Q Consensus 264 ~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 329 (765)
...-.+...+. .. ..|..|...+.+...........+ ..++...|..++-.|+.-.|...|+.++.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 00111222111 11 256777777766554422111222 45677778889999999999999999998
Q ss_pred cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHH
Q 004249 330 ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR 409 (765)
Q Consensus 330 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 409 (765)
.+ +.....|..++.+|....+.++-...|+++..+ +|+++.+|+.+|++++-++++++|+..|++++.++|++.-++
T Consensus 355 l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 355 LD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred cC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 77 666777999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccccccc
Q 004249 410 LTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETF 489 (765)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~ 489 (765)
..++.+..++++++++...|+.+....|.. +.++...|.++..++++++|++.|..++.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--------- 490 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNC------------PEVYNLFAEILTDQQQFDKAVKQYDKAIE--------- 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------chHHHHHHHHHhhHHhHHHHHHHHHHHHh---------
Confidence 999999999999999999999999999888 78899999999999999999999999986
Q ss_pred Chhh------HHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHH
Q 004249 490 NHEE------HRLLIIDLCKTLAS-LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVK 562 (765)
Q Consensus 490 ~~~~------~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 562 (765)
..|. ++..+++-|.+..+ .+++..|++++++|+++. |........++. +..++|+.++|+++|++++.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D----pkce~A~~tlaq-~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD----PKCEQAYETLAQ-FELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC----chHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHH
Confidence 4455 55556665655544 589999999999999998 555555555655 89999999999999999987
Q ss_pred hC
Q 004249 563 LH 564 (765)
Q Consensus 563 ~~ 564 (765)
+-
T Consensus 566 lA 567 (606)
T KOG0547|consen 566 LA 567 (606)
T ss_pred HH
Confidence 53
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.97 E-value=5.9e-25 Score=226.82 Aligned_cols=607 Identities=15% Similarity=0.105 Sum_probs=401.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
..+...|...+..|++++|...+..+++.+|.++.+|+.||.+|..+|+.+++..++-.|-.++|.+.+.|..++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 45666677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHhccHHHH
Q 004249 206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF---GVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~~~l~~~~~~~~~~~~A 282 (765)
+|++.+|.-+|.++++..|.+....+..+.+|.+.|+...|...|.+++...|....- ......+..+...++-+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999832211 1223557778888888999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc---------------------------CCCCh
Q 004249 283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE---------------------------NVSDH 335 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------------~~~~~ 335 (765)
++.++.++.... +.........++.+++....++.|.......... ..+-+
T Consensus 300 ~~~le~~~s~~~--~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 300 AKALEGALSKEK--DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHhhcc--ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999999988422 3445555667788888999999988777654320 00111
Q ss_pred HHH-HHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC-CHHHHHHHH
Q 004249 336 AES-INEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED-NIDARLTLA 413 (765)
Q Consensus 336 ~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 413 (765)
..+ ...++.+.++.++..+++..+..--... ..+.+..++.++.++...|++.+|+.+|..+....+. +...|+.+|
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~-~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVW-VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCC-hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 223 5666666677778888877775443331 2356789999999999999999999999999987653 457899999
Q ss_pred HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249 414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE 493 (765)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 493 (765)
++|..+|.+++|++.|++++...|+. ..+...++.++..+|+.++|++.+.+....-..-...-.-+.
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~------------~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDN------------LDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCc------------hhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 99999999999999999999999998 678889999999999999999998875421000000001123
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC---CCCch----------------HHHHHHHHhhcccc--------
Q 004249 494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG---KFPVE----------------KEELYFLGAQIPCN-------- 546 (765)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~----------------~~~~~~~~~~~~~~-------- 546 (765)
...+....+.++.+.|+.++=+......+..... -+|.+ ...+..+.. .-.+
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIR-AREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHH-HHhccCchHHhh
Confidence 4557778888888888888744433332221100 00100 011111110 0000
Q ss_pred --cCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhc--CCCCC---ch-hhhhhhhhhhhh
Q 004249 547 --TTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKY--RDFVP---PI-IISGHQFTMISH 618 (765)
Q Consensus 547 --~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~---~~-~~~g~~~~~~~~ 618 (765)
.++..+....+...+..+... .....+...+.+.+.. +.+...+...+... -..+. -+ ...-.+.+..++
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwf-el~~e~i~~L~k~~r~-qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d 681 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWF-ELFRELILSLAKLQRV-QEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARD 681 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHH-HHHHHHHHHHHHHHhH-HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCC
Confidence 011111222222222221100 0001111111221111 23333332222211 11111 11 222234456778
Q ss_pred HHHHHHHHHHHHhh-----CCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCC-chHHHhHHHHHH
Q 004249 619 HQDAAREYLEAYKL-----LPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENS-QEALYNIARAYH 692 (765)
Q Consensus 619 ~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~lg~~~~ 692 (765)
+..|..+....+.. +|.-+...++ ...++....++ .--..++......++.+ +--.+-.|+...
T Consensus 682 ~~~a~~~lR~~i~~~~~~~~~~q~~l~n~-~~s~~~~~~q~---------v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~ 751 (895)
T KOG2076|consen 682 PGDAFSYLRSVITQFQFYLDVYQLNLWNL-DFSYFSKYGQR---------VCYLRLIMRLLVKNKDDTPPLALIYGHNLF 751 (895)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHH---------HHHHHHHHHHhccCccCCcceeeeechhHh
Confidence 88888887777766 4543333322 23333222111 11122223333333333 444555566777
Q ss_pred HhchHHHHHHHHHHHHhhhhccCCCCCCC--------------C----CC------------CCCCCCccchhHHHHHHH
Q 004249 693 HVGLVSLAASYYEKVLAMYQKDCIIPGFP--------------D----HM------------EDWKPGHSDLRREAAYNL 742 (765)
Q Consensus 693 ~~g~~~~A~~~y~k~l~~~~~~~~~~~~~--------------~----~~------------~~~~~~~~~~~~ea~~nl 742 (765)
-.|-+--|+.+|-++....|++ |.+. . |. .+. -...-+.||.||+
T Consensus 752 ~~~s~~~Al~~y~ra~~~~pd~---Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~l--R~~~~~QEa~YNi 826 (895)
T KOG2076|consen 752 VNASFKHALQEYMRAFRQNPDS---PLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKEL--RRCEEKQEAFYNI 826 (895)
T ss_pred hccchHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh--hccHHHHHHHHHH
Confidence 7777777777777777777764 2211 0 00 000 0112468999999
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCC
Q 004249 743 HLIYKKSGAVDLARQVLRDHCTF 765 (765)
Q Consensus 743 ~~iy~~~g~~~~A~~~l~k~l~~ 765 (765)
|.+|.--|=.-.|+.+|+|+|-+
T Consensus 827 gRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 827 GRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHcccHHHHHHHHHHHhCC
Confidence 99999999999999999999854
No 24
>PLN03077 Protein ECB2; Provisional
Probab=99.96 E-value=5e-25 Score=253.08 Aligned_cols=584 Identities=11% Similarity=0.030 Sum_probs=397.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHHc
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLE-EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK-DSSLWKLIFPWLIEQ 172 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~ 172 (765)
......+...|++++|+.+|..+.... |.+...+..+...+...+....|...+..++...+. +......+...|.+.
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~ 134 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence 334456889999999999999988753 445567777778888899999999999999887654 345667788889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC------------------------
Q 004249 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL--CPEN------------------------ 226 (765)
Q Consensus 173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~------------------------ 226 (765)
|+.+.|...|+++.. .+..+|..+...|.+.|++++|+..|.++... .|+.
T Consensus 135 g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 135 GELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred CChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 999999999998753 46778999999999999999999999998753 3432
Q ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Q 004249 227 ----------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG 296 (765)
Q Consensus 227 ----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 296 (765)
..++..+...|.+.|++++|..+|+++.. |+ .. .|+.+...|.+.|++++|+.+|.++... +
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d-~~--s~n~li~~~~~~g~~~eAl~lf~~M~~~-g-- 283 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RD-CI--SWNAMISGYFENGECLEGLELFFTMREL-S-- 283 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CC-cc--hhHHHHHHHHhCCCHHHHHHHHHHHHHc-C--
Confidence 22344555666667777777777766542 21 11 4666777777777777777777776654 1
Q ss_pred CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHH
Q 004249 297 KELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHL 376 (765)
Q Consensus 297 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 376 (765)
...+...+..+...+...|+.+.|.+++..+.......+..++..+...|.+.|++++|..+|+++.. .+...|.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~~s~n 358 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----KDAVSWT 358 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeeHH
Confidence 12233444555556666777777777777666555555666777777777777777777777766431 2445666
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHH
Q 004249 377 KIAECSLALKEREKSIIYFYKALQIL--EDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRI 454 (765)
Q Consensus 377 ~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (765)
.+...|.+.|++++|+..|+++.+.. |+ ...+..+...+...|+.++|.+++..+.+..... +..+
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-----------~~~~ 426 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLIS-----------YVVV 426 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-----------chHH
Confidence 77777777777777777777665543 33 3344455556667777777777776665543322 2356
Q ss_pred HHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHH
Q 004249 455 KIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKE 534 (765)
Q Consensus 455 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 534 (765)
+..+...|.+.|++++|.+.|.++.. .+...+..+...|.+.|+.++|+.+|++++... +++..
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~----~pd~~ 490 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPE------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL----KPNSV 490 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCC------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC----CCCHh
Confidence 67777888888888888877765532 234466677777788888888888888876532 34444
Q ss_pred HHHHHHhhcccccCChhhHHHHHHHHHHhC-CCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhh
Q 004249 535 ELYFLGAQIPCNTTDPKLWFDGVRFMVKLH-PHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQF 613 (765)
Q Consensus 535 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~ 613 (765)
.+..++. .+.+.|+.+.+.+.+..+++.. +.+....+.+...+.+.|.. +.+.+.+... +.+...+..+...|
T Consensus 491 t~~~lL~-a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~-~~A~~~f~~~----~~d~~s~n~lI~~~ 564 (857)
T PLN03077 491 TLIAALS-ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM-NYAWNQFNSH----EKDVVSWNILLTGY 564 (857)
T ss_pred HHHHHHH-HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH-HHHHHHHHhc----CCChhhHHHHHHHH
Confidence 4445555 6777788888888888777643 23445666777777777665 4555555443 45566677777788
Q ss_pred hhhhhHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhc---ccCCCchHHHhHH
Q 004249 614 TMISHHQDAAREYLEAYK--LLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLR---LAENSQEALYNIA 688 (765)
Q Consensus 614 ~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~lg 688 (765)
...|+.++|+..|.+..+ ..|+.......+ .++.+. ..+.+|..++..-.+ +.| +.+.|..+.
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~~----------g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv 632 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSRS----------GMVTQGLEYFHSMEEKYSITP-NLKHYACVV 632 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhhc----------ChHHHHHHHHHHHHHHhCCCC-chHHHHHHH
Confidence 889999999999998776 457654433222 223222 246778888876653 334 347788899
Q ss_pred HHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 004249 689 RAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHC 763 (765)
Q Consensus 689 ~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l 763 (765)
.+|...|+.++|.+.+++. ...|+ ..++..|-..+...||.+.|....++.+
T Consensus 633 ~~l~r~G~~~eA~~~~~~m-~~~pd----------------------~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKM-PITPD----------------------PAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHhCCCHHHHHHHHHHC-CCCCC----------------------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999999988764 23331 3444455556788899998888777664
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.96 E-value=6.7e-26 Score=214.79 Aligned_cols=501 Identities=14% Similarity=0.071 Sum_probs=385.4
Q ss_pred HHHHHHHHhh--cCCCcchhhhhccccccccCCCCCC-----C-------CCCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004249 48 RRRFEAIIFG--FGSRKRSREASKKYPSLKKRGRPEG-----S-------KKKVCPEIRRMLGDASLHYALGRYEEAISV 113 (765)
Q Consensus 48 ~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 113 (765)
..+++++.+. +...|+++.++... +..||+.. + ...++-....++..|..|-...-+.+|+..
T Consensus 147 ~ev~ell~es~ian~~~~~k~aldka---kdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealnt 223 (840)
T KOG2003|consen 147 KEVMELLEESCIANECGDFKEALDKA---KDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNT 223 (840)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH---HhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhh
Confidence 3456665543 34557777777666 43443321 1 112333455678889999999999999999
Q ss_pred HHHHHH--hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 114 LHEVIR--LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD-----SSLWKLIFPWLIEQGDTTWAMSCLSEAV 186 (765)
Q Consensus 114 ~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al 186 (765)
|+-+++ ..|+....-..+|.++++..+|.+|+++|+.++..-|.- ...+.++|..+.+.|+|+.|+..|+.++
T Consensus 224 yeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m 303 (840)
T KOG2003|consen 224 YEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCM 303 (840)
T ss_pred hhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHH
Confidence 998875 457777788899999999999999999999999887753 3566778999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CC---------CH-HHHHHHHHH---H--HHcCCHHHHHHH
Q 004249 187 KADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC--PE---------NI-EALKMGAKL---Y--QKSGQIESSVDI 249 (765)
Q Consensus 187 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~---------~~-~~~~~la~~---~--~~~g~~~~A~~~ 249 (765)
+..|+. .+-+++..+++..|+-++-.+.|.+++.+- |+ ++ ..+..-+.- + +...+-..|.+.
T Consensus 304 ~~~pn~-~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~ 382 (840)
T KOG2003|consen 304 EEAPNF-IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKA 382 (840)
T ss_pred HhCccH-HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 999854 455778889999999999999999998752 11 11 111111111 1 111222233333
Q ss_pred HHHHHhc-----CCCCCC---H---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004249 250 LEDYLKG-----HPTEAD---F---------------GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIK 306 (765)
Q Consensus 250 ~~~~~~~-----~p~~~~---~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 306 (765)
.-.+.++ .|+... | ..-.+.+..+.+.|+++.|+++++-..+. +......+..+
T Consensus 383 i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k---dnk~~saaa~n 459 (840)
T KOG2003|consen 383 IITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK---DNKTASAAANN 459 (840)
T ss_pred HHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc---cchhhHHHhhh
Confidence 3333221 222111 0 01125566788999999999998766554 22333444556
Q ss_pred HHHHHHhc--CChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 004249 307 AGICHIQL--GNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLA 384 (765)
Q Consensus 307 l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 384 (765)
+..+++.+ .++..|..+...++..+ .-++.++.+.|.+.+..|++++|.+.|.+++.. +..-.++++++|..+..
T Consensus 460 l~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--dasc~ealfniglt~e~ 536 (840)
T KOG2003|consen 460 LCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--DASCTEALFNIGLTAEA 536 (840)
T ss_pred hHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--chHHHHHHHHhcccHHH
Confidence 66655554 37888888888887766 667888999999999999999999999999987 67778999999999999
Q ss_pred hccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHh
Q 004249 385 LKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA 464 (765)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (765)
+|+.++|+.+|-+.-.+--++.++++.++.+|..+.+..+|++++.++...-|.. +.++..++.+|-+
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~d------------p~ilskl~dlydq 604 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND------------PAILSKLADLYDQ 604 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC------------HHHHHHHHHHhhc
Confidence 9999999999999988888999999999999999999999999999999988877 7889999999999
Q ss_pred cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcc
Q 004249 465 KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIP 544 (765)
Q Consensus 465 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 544 (765)
.|+-.+|.+++....+ -.|-+.+...-||..|....-+++|+.+|+++--+. |+ ..-+..+.+.|+
T Consensus 605 egdksqafq~~ydsyr---------yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq----p~-~~kwqlmiasc~ 670 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYR---------YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ----PN-QSKWQLMIASCF 670 (840)
T ss_pred ccchhhhhhhhhhccc---------ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC----cc-HHHHHHHHHHHH
Confidence 9999999998877665 678899999999999999999999999999998776 43 444555556699
Q ss_pred cccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhh
Q 004249 545 CNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKI 584 (765)
Q Consensus 545 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 584 (765)
.+.|+|.+|++.|+..-..+|.+...+..+..+....|-.
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999999999999999999999998888887666554
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.95 E-value=5.6e-23 Score=203.78 Aligned_cols=548 Identities=15% Similarity=0.080 Sum_probs=344.0
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004249 138 LGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217 (765)
Q Consensus 138 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (765)
.++..+|...++...+.+|.++.+|..-|.+-...|.+..|.....+..+..|.+.++|..-+. +...+.|..+.-
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999888876543 334444555555
Q ss_pred HHHHhCCCCHHHHHHHHHH---------------------------HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 004249 218 QMVQLCPENIEALKMGAKL---------------------------YQKSGQIESSVDILEDYLKGHPTEADFGVIDLLA 270 (765)
Q Consensus 218 ~al~~~p~~~~~~~~la~~---------------------------~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 270 (765)
.+++..|.++..|+.-+.+ -....+.+.|+.++.++++..|.+.+ .|.
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~d--Lwl--- 414 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMD--LWL--- 414 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHH--HHH---
Confidence 5555555555444433322 22344555677777777777776654 333
Q ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC----CCChH----------
Q 004249 271 SMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN----VSDHA---------- 336 (765)
Q Consensus 271 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~---------- 336 (765)
.+.++.-|+.|..+++++.+. -|....+|...+..-...|+.+...+++.+.+... ..-+-
T Consensus 415 -AlarLetYenAkkvLNkaRe~----iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 415 -ALARLETYENAKKVLNKAREI----IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred -HHHHHHHHHHHHHHHHHHHhh----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 344556788888888888887 56677778777777777777776666666543211 01111
Q ss_pred ---------------------------HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHH
Q 004249 337 ---------------------------ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKERE 389 (765)
Q Consensus 337 ---------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 389 (765)
..|..-+..+.+.+-++-|..+|..++.. .|..-.+|...+..-...|..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHH
Confidence 23333444455555555555566555555 5555556655555555556666
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhH
Q 004249 390 KSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIE 469 (765)
Q Consensus 390 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 469 (765)
.-...+++++...|.....|...+..+...|+...|..++.++.+.+|.+ ..+++....+......++
T Consensus 568 sl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pns------------eeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 568 SLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNS------------EEIWLAAVKLEFENDELE 635 (913)
T ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc------------HHHHHHHHHHhhccccHH
Confidence 66666666666666655566666666666666666666666666655555 345555555555566666
Q ss_pred HHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCC
Q 004249 470 GFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTD 549 (765)
Q Consensus 470 ~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~ 549 (765)
.|...|.++.. ......+++..+.+...+++.++|+.+++.+++.. |.-+..+. ..+.++.++++
T Consensus 636 raR~llakar~----------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----p~f~Kl~l-mlGQi~e~~~~ 700 (913)
T KOG0495|consen 636 RARDLLAKARS----------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF----PDFHKLWL-MLGQIEEQMEN 700 (913)
T ss_pred HHHHHHHHHhc----------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----CchHHHHH-HHhHHHHHHHH
Confidence 66655555542 11233455555555555666666666666666655 33333333 33336666666
Q ss_pred hhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Q 004249 550 PKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEA 629 (765)
Q Consensus 550 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 629 (765)
.+.|...|..-++..|+.+..|..++.+-...+.. .++...+.+..-++|.+...++-.-..-+..|+.+.|-....+|
T Consensus 701 ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~-~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL-VRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch-hhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666666666666655554422 45555666666666666655555555555566666666666666
Q ss_pred HhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHh
Q 004249 630 YKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLA 709 (765)
Q Consensus 630 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~ 709 (765)
++..|++....- .-+++.-.-++ + .....+.+.+..++.++..+|+.+..-.+++.|...|++++.
T Consensus 780 LQecp~sg~LWa--EaI~le~~~~r----k--------Tks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 780 LQECPSSGLLWA--EAIWLEPRPQR----K--------TKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHhCCccchhHH--HHHHhccCccc----c--------hHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666666532211 00111000000 0 011223456778999999999999999999999999999999
Q ss_pred hhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 004249 710 MYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCT 764 (765)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l~ 764 (765)
.+|++ -.+.-.+-..+...|+-+.-.+++.++.+
T Consensus 846 ~d~d~---------------------GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 846 KDPDN---------------------GDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred cCCcc---------------------chHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99976 24444555667788888888888887643
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.2e-26 Score=230.29 Aligned_cols=309 Identities=14% Similarity=0.085 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
++...++++......-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-+..|-.....-....++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 44555777888888889999999999977777888899999999999999999999999999999998777666677777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI 249 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 249 (765)
..+.+--+--...+..+..+|+.|+.|..+|.+|..+++++.|+++|+++++++|....++..+|.-+.....++.|..+
T Consensus 398 WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~ 477 (638)
T KOG1126|consen 398 WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS 477 (638)
T ss_pred HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence 77776555555667778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc
Q 004249 250 LEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHW 329 (765)
Q Consensus 250 ~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 329 (765)
|+.++..+|.+.. +|+.+|.+|.++++++.|.-.|++++.+ .|.+..+...+|.++.+.|+.++|+.++++++.
T Consensus 478 fr~Al~~~~rhYn--AwYGlG~vy~Kqek~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 478 FRKALGVDPRHYN--AWYGLGTVYLKQEKLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHhhhcCCchhhH--HHHhhhhheeccchhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 9999999999877 8999999999999999999999999999 778888888888888888888888888888877
Q ss_pred cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHH
Q 004249 330 ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNID 407 (765)
Q Consensus 330 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 407 (765)
.+ |.++-..+..|.++...+++++|+..++++..+ .|+...+++.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 552 ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 552 LD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 66 777888888888888888888888888888888 7888888888888888888888888888888888887554
No 28
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=1.7e-22 Score=227.47 Aligned_cols=403 Identities=13% Similarity=0.047 Sum_probs=337.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEE--LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT 176 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 176 (765)
..+.+.|++++|+.+|+++...+.- +...+..+...+...|..++|..+|+.... | +...|..+...+...|+++
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHH
Confidence 4567899999999999999876532 333444566678889999999999987764 4 5678888999999999999
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 177 WAMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP-ENIEALKMGAKLYQKSGQIESSVDILEDYL 254 (765)
Q Consensus 177 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 254 (765)
+|..+|.++.+... .+...+..+...|.+.|+.++|..+|+++.+... .+...|..+...|.+.|++++|+.+|+.+.
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999988753 4678899999999999999999999999987653 367889999999999999999999999987
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 004249 255 KGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD 334 (765)
Q Consensus 255 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 334 (765)
...-. ++...|..+...+.+.|++++|.+++.++... ...-..+...+..+..+|.+.|++++|.++|+.+.....+.
T Consensus 535 ~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 535 SKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 65322 23347889999999999999999999999764 11122345677888889999999999999999998877677
Q ss_pred hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004249 335 HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL-EDNIDARLTLA 413 (765)
Q Consensus 335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 413 (765)
+...|..+...|.+.|++++|+.+|.++...+..| +...|..+...+.+.|++++|.+.++.+.+.. +.+..++..+.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88999999999999999999999999999876455 46788999999999999999999999999875 45678899999
Q ss_pred HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249 414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE 493 (765)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 493 (765)
..|.+.|++++|.++|+++......+ +...|..+...|.+.|++++|++.+..+.... ..|
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~P-----------dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-------i~P- 752 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRP-----------TVSTMNALITALCEGNQLPKALEVLSEMKRLG-------LCP- 752 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCC-
Confidence 99999999999999999875432211 23678899999999999999999999987543 333
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249 494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGY 526 (765)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 526 (765)
+...+..+...+.+.|++++|.+++..+++...
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 445666777899999999999999999998763
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=1.6e-23 Score=229.23 Aligned_cols=478 Identities=10% Similarity=-0.039 Sum_probs=366.0
Q ss_pred HHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 004249 118 IRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKF 197 (765)
Q Consensus 118 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 197 (765)
.-..|..+...+..+.+..+.|+++.|+..|+++++.+|.++.+...++.++...|+.++|+.++++++...|.......
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 34578899999999999999999999999999999999999655448888999999999999999999944455555666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Q 004249 198 HLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277 (765)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 277 (765)
.+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++...+|.... +..++.++...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~---~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN---YMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH---HHHHHHHHHhcc
Confidence 66889999999999999999999999999999999999999999999999999999999998543 345566666677
Q ss_pred cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHH
Q 004249 278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALK 357 (765)
Q Consensus 278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 357 (765)
+..+|+..+++++.. .|....++..+..++...|-...|.+...+--.-..+. ...+. +.+.|.+
T Consensus 184 ~~~~AL~~~ekll~~----~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~-~~~~l----------~~~~~a~ 248 (822)
T PRK14574 184 RNYDALQASSEAVRL----APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAE-HYRQL----------ERDAAAE 248 (822)
T ss_pred hHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHH-HHHHH----------HHHHHHH
Confidence 787799999999999 78888999999999999999999998877642211111 11111 1222333
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHcCCHHHHHHhcC
Q 004249 358 YYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI-------DARLTLASLLLEDAKDEEAISLLT 430 (765)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~ 430 (765)
..+-+. .+.... . .+---.+.|+..++.++...|..+ .+..-...++...|++.+++..|+
T Consensus 249 ~vr~a~----~~~~~~-----~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 249 QVRMAV----LPTRSE-----T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHhhcc----cccccc-----h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 222221 111100 0 011124667777777777443322 233445667778899999999998
Q ss_pred CCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhc
Q 004249 431 PPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHR 510 (765)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 510 (765)
......... | ..+....|..|...+++++|+.+|..++....+ ....|.+......|..++...++
T Consensus 317 ~l~~~~~~~-------P----~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~---~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 317 AMEAEGYKM-------P----DYARRWAASAYIDRRLPEKAAPILSSLYYSDGK---TFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HhhhcCCCC-------C----HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc---ccCCCcchHHHHHHHHHHHhccc
Confidence 877543211 1 346678899999999999999999988763311 11123344445678889999999
Q ss_pred HHHHHHHHHHHHHhccC---------CCCch-HHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhh
Q 004249 511 YEDAIKIINLILKLGYG---------KFPVE-KEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSR 580 (765)
Q Consensus 511 ~~~A~~~~~~al~~~~~---------~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 580 (765)
+++|..++++..+..|. ..|++ -.....+.+.++...|+..+|.+.+++++...|.|+..+..++.+...
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999985541 11222 223444455578889999999999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHH
Q 004249 581 FEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLIN 640 (765)
Q Consensus 581 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 640 (765)
.+.. ..+...+.......|++..+....|.+....++|.+|.....++++..|+++.+.
T Consensus 463 Rg~p-~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 463 RDLP-RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred cCCH-HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 7776 5777777777888999999999999999999999999999999999999998553
No 30
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=8.2e-24 Score=237.09 Aligned_cols=446 Identities=13% Similarity=0.038 Sum_probs=244.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHcCC
Q 004249 98 ASLHYALGRYEEAISVLHEVIRLEE--ELPNSYHILGLVHDALGNTAKAMGCYWLAACYK-QKDSSLWKLIFPWLIEQGD 174 (765)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~ 174 (765)
...+...|++++|+.+|..+....| .+...+..+..++...++++.|...+..+.... ..+...+..+..+|.+.|+
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCC
Confidence 3446667777777777777665432 234556666666667777777777776665432 1245566666677777777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 175 TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE-NIEALKMGAKLYQKSGQIESSVDILEDY 253 (765)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 253 (765)
+++|...|+++.. | +..+|..+...|.+.|++++|+..|+++.+..+. +...+..+...+...|....+.+++..+
T Consensus 174 ~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 174 LIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred HHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 7777777766543 2 4455666666667777777777777766654322 2344555555666666666666666555
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCC
Q 004249 254 LKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVS 333 (765)
Q Consensus 254 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 333 (765)
++..-.. +..++..+...|.+.|++++|..+|+.+. +.+...|..+...|.+.|+.++|..+|+++......
T Consensus 251 ~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 251 LKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 5433111 11145566666666666666666665542 123445555556666666666666666665444334
Q ss_pred ChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004249 334 DHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA 413 (765)
Q Consensus 334 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 413 (765)
.+...+..+...+.+.|++++|.+++..+++.+ .+.+..++..+...|.+.|++++|...|+++.+ .+..+|..+.
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI 398 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALI 398 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHH
Confidence 445555556666666666666666666655553 233445555566666666666666666655432 2344555566
Q ss_pred HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249 414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE 493 (765)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 493 (765)
..|.+.|+.++|+++|+++......+ +...+..+...+...|..++|.+.|..+.... ....
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~P-----------d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-------g~~p 460 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAP-----------NHVTFLAVLSACRYSGLSEQGWEIFQSMSENH-------RIKP 460 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-----------CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-------CCCC
Confidence 66666666666666665544322111 12444555555555666666665555554311 1111
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHH
Q 004249 494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNR 573 (765)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 573 (765)
+...+..+...|.+.|++++|.+++++.- ..++...+..++. .+...|+.+.|...+++++...|++...+..
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~~------~~p~~~~~~~Ll~-a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRAP------FKPTVNMWAALLT-ACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHCC------CCCCHHHHHHHHH-HHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 22344445555556666666665554321 0122223333333 4555556666666555555555555544444
Q ss_pred HHHHHhhhhh
Q 004249 574 YYKLVSRFEK 583 (765)
Q Consensus 574 ~~~~~~~~~~ 583 (765)
+..++...|+
T Consensus 534 L~~~y~~~G~ 543 (697)
T PLN03081 534 LLNLYNSSGR 543 (697)
T ss_pred HHHHHHhCCC
Confidence 4444444433
No 31
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=3e-23 Score=232.51 Aligned_cols=466 Identities=9% Similarity=-0.010 Sum_probs=384.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQ--KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD-PNDFKLKFHLASL 202 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 202 (765)
..|..+...+...|++++|+..|..+....+ -+...+..+..++...++++.|...+..+.... ..+..++..+...
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3567777888899999999999999876543 356778889999999999999999999888753 2367888999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249 203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A 282 (765)
|.+.|+++.|...|+++.+ | +...|..+...|.+.|++++|+.+|+++.+..+. ++...+..+...+...|....+
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999998854 3 5667899999999999999999999999876543 2233567888889999999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHH
Q 004249 283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHML 362 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 362 (765)
.+++..+.+. + ...+..++..+...|.+.|++++|...|+.+. +.+...|..+...|.+.|++++|+.+|+++
T Consensus 244 ~~l~~~~~~~-g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 244 QQLHCCVLKT-G--VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHh-C--CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9998887766 1 23355677788899999999999999999874 446789999999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccC
Q 004249 363 EANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL-EDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVN 441 (765)
Q Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 441 (765)
...+..| +...+..+..++.+.|++++|.+.+..+++.. +.+..++..+...|.+.|+.++|.++|+++.+.+
T Consensus 317 ~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d----- 390 (697)
T PLN03081 317 RDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN----- 390 (697)
T ss_pred HHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCC-----
Confidence 8775344 56788999999999999999999999999886 5677888999999999999999999999887632
Q ss_pred cccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 004249 442 SDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLI 521 (765)
Q Consensus 442 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 521 (765)
...|..+...|.+.|+.++|++.|.++.... ..| +...+..+...+...|..++|.++|+.+
T Consensus 391 ----------~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-------~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 391 ----------LISWNALIAGYGNHGRGTKAVEMFERMIAEG-------VAP-NHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred ----------eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 2568899999999999999999999988654 334 3556778888999999999999999999
Q ss_pred HHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 004249 522 LKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRD 601 (765)
Q Consensus 522 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 601 (765)
.+.... .++ ...|....+.+.+.|+.++|.+.++++- ..| +..+|+.+...+...++. +.+...+.+.++..|+
T Consensus 453 ~~~~g~--~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~-~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 453 SENHRI--KPR-AMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNL-ELGRLAAEKLYGMGPE 526 (697)
T ss_pred HHhcCC--CCC-ccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCc-HHHHHHHHHHhCCCCC
Confidence 864311 122 2345555668999999999999987752 233 456788888887776665 5667777778888999
Q ss_pred CCCchhhhhhhhhhhhhHHHHHHHHHHHHhh
Q 004249 602 FVPPIIISGHQFTMISHHQDAAREYLEAYKL 632 (765)
Q Consensus 602 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 632 (765)
+...+..+.++|...|++++|...+....+.
T Consensus 527 ~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 527 KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 8889999999999999999999999987654
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-23 Score=198.11 Aligned_cols=372 Identities=16% Similarity=0.118 Sum_probs=313.8
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHH
Q 004249 123 ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP--NDFKLKFHLA 200 (765)
Q Consensus 123 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la 200 (765)
.++-.++..|.++...|....|+..|..++...|.+..+|..|+.+... +......+..-| .+.-.-+.++
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHH
Confidence 4566788899999999999999999999999999999999988876543 223333333334 3344456788
Q ss_pred HHHHHhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccH
Q 004249 201 SLYVELGNFQRAADVYRQMVQL-CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY 279 (765)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 279 (765)
.++....+.++++.-++..... .|.+.......|.+.....++++|+..|+...+.+|-..+ -...+.++++-.++-
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~--dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD--DMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch--hHHHHhHHHHHHhhh
Confidence 8888888999999999999888 8999888889999999999999999999999999998766 455677777666654
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249 280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYY 359 (765)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 359 (765)
.+-.-.-..+..+ +...++....+|..|...++.++|+.+|+++++.+ |....+|..+|.-|+..++...|+..|
T Consensus 313 skLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SKLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 4444444455555 56667777888999999999999999999999888 888999999999999999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249 360 HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY 439 (765)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (765)
++++++ +|.+..+|+.+|+.|.-++.+.=|+-+|++++...|.++..|..||.+|.+.++.++|+++|..++.....+
T Consensus 388 RrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 388 RRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred cCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 004249 440 VNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIIN 519 (765)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 519 (765)
+.++..+|.+|...++.++|...|.+.+... . ..-..+|+-..+..-|+.-+.+.+++++|..+..
T Consensus 466 ------------~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~-~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 466 ------------GSALVRLAKLYEELKDLNEAAQYYEKYVEVS-E-LEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred ------------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-H-hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 6789999999999999999999999988622 1 0111455667777779999999999999999887
Q ss_pred HHHHh
Q 004249 520 LILKL 524 (765)
Q Consensus 520 ~al~~ 524 (765)
.++.-
T Consensus 532 ~~~~~ 536 (559)
T KOG1155|consen 532 LVLKG 536 (559)
T ss_pred HHhcC
Confidence 77654
No 33
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=1.1e-21 Score=220.88 Aligned_cols=366 Identities=13% Similarity=0.076 Sum_probs=310.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHcCCHHH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQ-KDSSLWKLIFPWLIEQGDTTW 177 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~ 177 (765)
..+...|..++|..+++.+.. | +...|..+-.++...|+++.|...|..+.+... .+...|..+...|.+.|+.++
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 456788999999999987754 3 467888888999999999999999999988653 367888999999999999999
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004249 178 AMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLC-PENIEALKMGAKLYQKSGQIESSVDILEDYLK 255 (765)
Q Consensus 178 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 255 (765)
|..+|+++..... .+..+|..+...|.+.|++++|+..|..+.... ..+...+..+...|.+.|++++|.+++.++..
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999987653 378899999999999999999999999997643 23467899999999999999999999999976
Q ss_pred c-CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 004249 256 G-HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD 334 (765)
Q Consensus 256 ~-~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 334 (765)
. .+-.++...+..+...|.+.|++++|.++|+.+.+. +.+.....+..+...|.+.|++++|..+|..+.......
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~---gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY---NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 3 222333447889999999999999999999999876 224456778889999999999999999999998766566
Q ss_pred hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004249 335 HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL-EDNIDARLTLA 413 (765)
Q Consensus 335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 413 (765)
+...+..+...+.+.|++++|..+++.+.+.+ .+.+...+..+..+|.+.|++++|...|+++.... ..+...|..+.
T Consensus 648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQG-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 68899999999999999999999999999875 34567899999999999999999999999987643 33567899999
Q ss_pred HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhh
Q 004249 414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCES 482 (765)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 482 (765)
..|.+.|++++|.++|+++......+ +...+..+...+.+.|++++|.+++..+++..
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~P-----------d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCP-----------NTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999876533221 23667778889999999999999999998754
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.4e-23 Score=220.48 Aligned_cols=275 Identities=14% Similarity=0.091 Sum_probs=188.5
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD----SSLWK 163 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~ 163 (765)
.+.+...+..|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...+.. ..++.
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34555566667778888888888888888888888888888888888888888888888888887753322 24567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH
Q 004249 164 LIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI-----EALKMGAKLYQ 238 (765)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~ 238 (765)
.+|.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+. ..+..+|.++.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 7788888888888888888888887777778888888888888888888888888887776542 23456777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhcCCh
Q 004249 239 KSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELL-LALKIKAGICHIQLGNT 317 (765)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 317 (765)
..|++++|+..|+++++..|+... .+..+|.++...|++++|+..++++... .+.. ..++..++.++...|++
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVR--ASILLGDLALAQGDYAAAIEALERVEEQ----DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHH----ChhhHHHHHHHHHHHHHHcCCH
Confidence 777777777777777777776554 5667777777777777777777777765 2221 23344455555555555
Q ss_pred hHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCH
Q 004249 318 DKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDG 372 (765)
Q Consensus 318 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 372 (765)
++|...+++++... |+. ..+..++.++...|++++|+..+++++.. .|++.
T Consensus 266 ~~A~~~l~~~~~~~-p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 266 AEGLEFLRRALEEY-PGA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred HHHHHHHHHHHHhC-CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 55555555554433 222 22244555555555555555555555554 44444
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.4e-23 Score=201.03 Aligned_cols=451 Identities=14% Similarity=0.082 Sum_probs=361.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA 178 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 178 (765)
.-+..+.+|.-|+-+-+++..+. .+|.-.+.+|.+++-.|++..|......- .+...+....+..+.++....++++|
T Consensus 24 r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~a 101 (611)
T KOG1173|consen 24 RDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQA 101 (611)
T ss_pred HHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999998877 77888889999999999999988877654 45566778888899999999999999
Q ss_pred HHHHHHH------HhcCCCC-------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004249 179 MSCLSEA------VKADPND-------------------FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG 233 (765)
Q Consensus 179 ~~~~~~a------l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 233 (765)
..++.+. +..+|.+ ....+..|.+|....+.++|...|.+++..++.+.++...+
T Consensus 102 l~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~l 181 (611)
T KOG1173|consen 102 LLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKL 181 (611)
T ss_pred HHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 9888732 1112222 12456778899999999999999999999998886655444
Q ss_pred HHHHHHc-----------------CCHHHHHH-HHHHH---------HhcCCC------CCCHHHHHHHHHHHHHhccHH
Q 004249 234 AKLYQKS-----------------GQIESSVD-ILEDY---------LKGHPT------EADFGVIDLLASMLVQMNAYD 280 (765)
Q Consensus 234 a~~~~~~-----------------g~~~~A~~-~~~~~---------~~~~p~------~~~~~~~~~l~~~~~~~~~~~ 280 (765)
.....-. +...+-++ .|+-. +...|+ .....++...+..++..+++.
T Consensus 182 vs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~ 261 (611)
T KOG1173|consen 182 VSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFK 261 (611)
T ss_pred HHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHH
Confidence 3322211 11111111 11110 001121 011235667888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHH
Q 004249 281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH 360 (765)
Q Consensus 281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 360 (765)
+..+.++..++. +|.....+....-++...|+..+-..+-.+++... |+.+-.|+.+|..|...|++.+|..+|.
T Consensus 262 ~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~S 336 (611)
T KOG1173|consen 262 ECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFS 336 (611)
T ss_pred HHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHH
Confidence 999999999999 55555554443338899999888877777888777 8889999999999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCcccccc
Q 004249 361 MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYV 440 (765)
Q Consensus 361 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 440 (765)
++..+ +|....+|...|..+...|..++|+..|..|-++.|......+.+|.-|.+.+++.-|.+.|.++..+.|..
T Consensus 337 Kat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D- 413 (611)
T KOG1173|consen 337 KATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD- 413 (611)
T ss_pred HHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccccccc-ChhhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 004249 441 NSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETF-NHEEHRLLIIDLCKTLASLHRYEDAIKIIN 519 (765)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 519 (765)
+.+...+|.+.+..+.+.+|...|..++... .++. ..+.|...+.+||.++.+.+++++|+..++
T Consensus 414 -----------plv~~Elgvvay~~~~y~~A~~~f~~~l~~i---k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 414 -----------PLVLHELGVVAYTYEEYPEALKYFQKALEVI---KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred -----------chhhhhhhheeehHhhhHHHHHHHHHHHHHh---hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 6788899999999999999999999887322 1111 122477789999999999999999999999
Q ss_pred HHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHH
Q 004249 520 LILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLV 578 (765)
Q Consensus 520 ~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 578 (765)
+++.+. |.+....-.+|- ++...|+++.|++.|.++|.+.|++..+-..+...+
T Consensus 480 ~aL~l~----~k~~~~~asig~-iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 480 KALLLS----PKDASTHASIGY-IYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHcC----CCchhHHHHHHH-HHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999 777777777777 999999999999999999999999976655554443
No 36
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.4e-23 Score=220.41 Aligned_cols=304 Identities=13% Similarity=0.071 Sum_probs=264.6
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHH
Q 004249 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND----FKLKFHL 199 (765)
Q Consensus 124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 199 (765)
.....+.+|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 345677789999999999999999999999999999999999999999999999999999998854332 3568899
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHh
Q 004249 200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD---FGVIDLLASMLVQM 276 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~~~l~~~~~~~ 276 (765)
|.++...|++++|+..|.++++..|.+..++..++.++...|++++|+..++++++..|.+.. ...+..+|.++...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999998877643 22455789999999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHH
Q 004249 277 NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTAL 356 (765)
Q Consensus 277 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 356 (765)
|++++|+..++++++. .+....++..+|.++...|++++|+..+++++...+.....++..++.++...|++++|+
T Consensus 194 ~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 194 GDLDAARALLKKALAA----DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CCHHHHHHHHHHHHhH----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998 566778899999999999999999999999987664444567889999999999999999
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--cCCHHHHHHhcCCCCC
Q 004249 357 KYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE--DAKDEEAISLLTPPMS 434 (765)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~ 434 (765)
..+++++.. .|+... +..++.++...|++++|+..++++++..|++......+...+.. .|+.++++..+++.+.
T Consensus 270 ~~l~~~~~~--~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 270 EFLRRALEE--YPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHh--CCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999999998 787644 48899999999999999999999999999987655444444322 4588888888876654
No 37
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.94 E-value=6e-23 Score=212.84 Aligned_cols=436 Identities=14% Similarity=0.043 Sum_probs=258.7
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249 103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCL 182 (765)
Q Consensus 103 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 182 (765)
.+++...|...|-++++++|..+.+|..||.+|...-+...|.++|++|.+++|.+..++-..+..|.+..+++.|....
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34568899999999999999999999999999999889999999999999999998888777777777766666666654
Q ss_pred HHHHhcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249 183 SEAVKADPND--FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE 260 (765)
Q Consensus 183 ~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 260 (765)
-.+-+..|.. ...|..+|-.|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 4444433321 23344455566666666666666666666666666666666666666666666666666666666554
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHH-----------------------------------------HHhc----C
Q 004249 261 ADFGVIDLLASMLVQMNAYDRVLKHIELVD-----------------------------------------LVYY----S 295 (765)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------------------------------------~~~~----~ 295 (765)
.- +.+..+.+....|.|.+|+..+...+ +.+. .
T Consensus 630 ~y--~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 630 KY--GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33 33345555555555555555544433 2110 0
Q ss_pred CCCccHHHHHHHHHH-------------------HH----hcCCh---h---HHHHHHHhhcccCCCChHHHHHHHHHHH
Q 004249 296 GKELLLALKIKAGIC-------------------HI----QLGNT---D---KAEILLTAIHWENVSDHAESINEIADLF 346 (765)
Q Consensus 296 ~~~~~~~~~~~l~~~-------------------~~----~~~~~---~---~A~~~~~~~~~~~~~~~~~~~~~la~~~ 346 (765)
........|..++.+ +. .++.. + -+.+++-..++ ...++..|+++|..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 000011111111110 00 01111 1 11122221111 123355677777555
Q ss_pred Hc--------cccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004249 347 KN--------RELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE 418 (765)
Q Consensus 347 ~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 418 (765)
.. ..+...|+.++.+++++ ..++...|..||.+ ...|++.-|..+|-+.+...|.+...|.++|.++.+
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 43 12334677777777777 67777777777777 555777777777777777777777777777777777
Q ss_pred cCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHH---------------------
Q 004249 419 DAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLP--------------------- 477 (765)
Q Consensus 419 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~--------------------- 477 (765)
..+++.|...|.++...+|.+ ...|...+.+....|+.-++...+..
T Consensus 863 n~d~E~A~~af~~~qSLdP~n------------l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLN------------LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchh------------hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 777777777777777777766 23333333333333333333333332
Q ss_pred ------------------HHhhhccccc-ccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCc-hHHHHH
Q 004249 478 ------------------LVCESSHQEE-TFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPV-EKEELY 537 (765)
Q Consensus 478 ------------------~~~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~ 537 (765)
+......+.. +...|+...++...|..+..++.+.+|.+...+.+.+-...... ....+-
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 2111111111 11667778888888888888888888888887776654321111 111133
Q ss_pred HHHhhcccccCChhhHHHHH
Q 004249 538 FLGAQIPCNTTDPKLWFDGV 557 (765)
Q Consensus 538 ~~~~~~~~~~g~~~~A~~~~ 557 (765)
...++++...|+++.|...+
T Consensus 1011 ~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhh
Confidence 33444777777777665443
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.8e-24 Score=216.67 Aligned_cols=304 Identities=11% Similarity=0.028 Sum_probs=279.2
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249 127 SYHILGLVHD--ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 127 ~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (765)
.+..+|..|. .+-+..+|+..|.+.-...++...+...+|..|+++++|++|..+|+.+-+..|-..+..-....++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 4445555554 44567899999999767778888889999999999999999999999999999987777777777777
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK 284 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~ 284 (765)
.+.+.-+---..+..+..+|..|+.|..+|.+|.-+++.+.|+++|++++.++|...- +|..+|.-+.....+|.|..
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY--ayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY--AYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch--hhhhcCChhhhhHHHHhHHH
Confidence 7776655556667788999999999999999999999999999999999999998876 78899999999999999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHh
Q 004249 285 HIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA 364 (765)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 364 (765)
.|+.++.. ++....+|+.+|.+|.++++++.|.-.|++++..+ |.+..+...+|.++.+.|+.++|+.+|++++.
T Consensus 477 ~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 477 SFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 99999999 88999999999999999999999999999999988 88899999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249 365 NAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY 439 (765)
Q Consensus 365 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (765)
+ +|.++-..+..|.++...+++++|+..++++.++-|++..+++.+|.+|.+.|+.+.|+..|.-|.+.+|..
T Consensus 552 l--d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 552 L--DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred c--CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999886
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.8e-22 Score=192.76 Aligned_cols=369 Identities=12% Similarity=0.060 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CCHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQ--KDSSLWKLIFP 167 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~la~ 167 (765)
+...++..|.++...|..+.|+..|..++...|-+..+|..|+.+... ++........-| .+.-.-+.++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 344556778999999999999999999999999999999999877643 222333332233 23334456888
Q ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKA-DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS 246 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 246 (765)
++....+.++++.-++..+.. .|.+.-.-...|.+...+.++++|+..|+.+.+.+|-..+-.-....+++-.++-.+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 888888999999999999988 7888888899999999999999999999999999998877666777777766665555
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHh
Q 004249 247 VDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTA 326 (765)
Q Consensus 247 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 326 (765)
.-+.+.+..++.-.+. ....+|+.|.-.++.++|+.+|++++++ +|....+|..+|.-|..+++...|+..|++
T Consensus 316 s~LA~~v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 5555666666655555 5668999999999999999999999999 889999999999999999999999999999
Q ss_pred hcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH
Q 004249 327 IHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI 406 (765)
Q Consensus 327 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 406 (765)
+++.+ |.+-.+|+.+|+.|.-.+.+.=|+-+|+++... .|+++.+|..||.||.+.++.++|+.+|.+++.....+.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 99988 888999999999999999999999999999999 999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHH
Q 004249 407 DARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLV 479 (765)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 479 (765)
.++..||.+|.+.++..+|..+|++.++..... .. ..+ .-..+...++..+.+.+++++|-......+
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e-g~--~~~--~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELE-GE--IDD--ETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh-cc--cch--HHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 999999999999999999999998877632100 00 000 013566679999999999999986665554
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=6.4e-23 Score=194.73 Aligned_cols=509 Identities=13% Similarity=0.082 Sum_probs=373.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------------CC------CchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLE------------EE------LPNSYHILGLVHDALGNTAKAMGCYWLA 151 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 151 (765)
++..++....+.-..|++.+|+.-...+=+.. |. ...+++.++.-|.....+.+|+..|+-.
T Consensus 148 ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeii 227 (840)
T KOG2003|consen 148 EVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEII 227 (840)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhh
Confidence 35566676777778899999988776542211 21 1257888899998888999999999887
Q ss_pred hcc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249 152 ACY--KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND-----FKLKFHLASLYVELGNFQRAADVYRQMVQLCP 224 (765)
Q Consensus 152 ~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 224 (765)
++. .|+......++|.++++...|.+|+++|+.++..-|.- ..++.++|..+.+.|+|+.|+..|+.+.+..|
T Consensus 228 vknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p 307 (840)
T KOG2003|consen 228 VKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP 307 (840)
T ss_pred hcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc
Confidence 753 47777777889999999999999999999999876642 45678888999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C---------CCCCHHHHHH-H-HHHH--HHhccHHHHHHHHHHH
Q 004249 225 ENIEALKMGAKLYQKSGQIESSVDILEDYLKGH--P---------TEADFGVIDL-L-ASML--VQMNAYDRVLKHIELV 289 (765)
Q Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p---------~~~~~~~~~~-l-~~~~--~~~~~~~~A~~~~~~~ 289 (765)
+... -+++..+++..|+-++-.+.|.+++.+- | +++....+.. + ...+ ....+-..|.+.+-.+
T Consensus 308 n~~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta 386 (840)
T KOG2003|consen 308 NFIA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITA 386 (840)
T ss_pred cHHh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 7654 4577788889999999999999988642 1 1222111110 0 0111 1112233344444444
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC
Q 004249 290 DLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVH 369 (765)
Q Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 369 (765)
.++..+--.... ..|. +=.++.++.. ...+--.+.-.+.+-.+++.|+++.|++++.-..+.. ..
T Consensus 387 ~kiiapvi~~~f----a~g~--------dwcle~lk~s--~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd-nk 451 (840)
T KOG2003|consen 387 AKIIAPVIAPDF----AAGC--------DWCLESLKAS--QHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD-NK 451 (840)
T ss_pred HHHhccccccch----hccc--------HHHHHHHHHh--hhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc-ch
Confidence 444221111111 1110 0001111111 0112223344556677889999999999887555442 22
Q ss_pred CCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchh
Q 004249 370 NDGCLHLKIAECSLALK--EREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHA 447 (765)
Q Consensus 370 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 447 (765)
....+-.++..+++.+| ++.+|..+-..++..+.-++.+....|.+-+..|++++|.+.|++++..+...
T Consensus 452 ~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-------- 523 (840)
T KOG2003|consen 452 TASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-------- 523 (840)
T ss_pred hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH--------
Confidence 22334455665655543 58889999999999998899999999999999999999999999998877665
Q ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC
Q 004249 448 WWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG 527 (765)
Q Consensus 448 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 527 (765)
..+++.+|..+..+|+.++|++.|.++-. .--++.++++.++.+|..+.+..+|++++.++..+.
T Consensus 524 ----~ealfniglt~e~~~~ldeald~f~klh~---------il~nn~evl~qianiye~led~aqaie~~~q~~sli-- 588 (840)
T KOG2003|consen 524 ----TEALFNIGLTAEALGNLDEALDCFLKLHA---------ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI-- 588 (840)
T ss_pred ----HHHHHHhcccHHHhcCHHHHHHHHHHHHH---------HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--
Confidence 57888999999999999999999887653 334688899999999999999999999999999888
Q ss_pred CCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchh
Q 004249 528 KFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPII 607 (765)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 607 (765)
|++|..+..++. +|-+.|+-.+|+.++-.....+|.|..+...++..+..+. .++.+..|+++..-..|+...-.+
T Consensus 589 --p~dp~ilskl~d-lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq-f~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 589 --PNDPAILSKLAD-LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ-FSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred --CCCHHHHHHHHH-HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH-HHHHHHHHHHHHHhcCccHHHHHH
Confidence 888888887777 9999999999999999999999999888877777665543 346889999998888898887778
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHH
Q 004249 608 ISGHQFTMISHHQDAAREYLEAYKLLPENPLINL 641 (765)
Q Consensus 608 ~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 641 (765)
..+.++-..|+|++|...|....+..|.+...+-
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfpedldclk 698 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLK 698 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence 8899999999999999999999999999865443
No 41
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.5e-23 Score=200.42 Aligned_cols=431 Identities=15% Similarity=0.116 Sum_probs=305.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ 172 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 172 (765)
..-.+|+..+..|+|+.|+.+|.+++.++|.+...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+.-+
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC---------------------HHHHHHHHHHHHH---hCCCCHH
Q 004249 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN---------------------FQRAADVYRQMVQ---LCPENIE 228 (765)
Q Consensus 173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~al~---~~p~~~~ 228 (765)
|+|++|+..|.+.++.+|++......++.++..... +-..-..|...++ .+|.+..
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999999999999999999998888732200 1111122223322 3332221
Q ss_pred HHHHH---HHHHHHc-CCHHHHHHHHHHHH-----hcCCC---------CC----------CHHHHHHHHHHHHHhccHH
Q 004249 229 ALKMG---AKLYQKS-GQIESSVDILEDYL-----KGHPT---------EA----------DFGVIDLLASMLVQMNAYD 280 (765)
Q Consensus 229 ~~~~l---a~~~~~~-g~~~~A~~~~~~~~-----~~~p~---------~~----------~~~~~~~l~~~~~~~~~~~ 280 (765)
.+..- ..+.... |.-.. ....... ...|. -. ...-...+|...+...++.
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred cccccHHHHHHHHHHhcCccc--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 11110 0000000 00000 0000000 00110 00 0112347888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC------hHHHHHHHHHHHHccccHHH
Q 004249 281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD------HAESINEIADLFKNRELYST 354 (765)
Q Consensus 281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~ 354 (765)
.|++.+..++.+ . .....+.+.+-+++..|.+.+.+.....+++..... -......+|..+...++++.
T Consensus 242 ~a~q~y~~a~el----~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 242 TAIQHYAKALEL----A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHhH----h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 888888888888 4 556667777888888888888877777766543211 12234446667778888889
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249 355 ALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMS 434 (765)
Q Consensus 355 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (765)
|+.+|++++... .. ..+.......+++....+...-.+|.-...-..-|..++..|++..|+..|.+++.
T Consensus 317 ai~~~~kaLte~--Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 317 AIKYYQKALTEH--RT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHHHhhhh--cC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 999998877652 21 45566667777777777777777777766666678888888888888888888888
Q ss_pred ccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHH
Q 004249 435 LENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDA 514 (765)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 514 (765)
.+|++ +..+..+|-+|.+.|.+..|+......++ .+|++...+++-|.++..+.+|++|
T Consensus 387 r~P~D------------a~lYsNRAac~~kL~~~~~aL~Da~~~ie---------L~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 387 RDPED------------ARLYSNRAACYLKLGEYPEALKDAKKCIE---------LDPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred cCCch------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHh---------cCchHHHHHHHHHHHHHHHHHHHHH
Confidence 88777 67788888888888888888888887776 7788888888888888888888888
Q ss_pred HHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCc
Q 004249 515 IKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHR 567 (765)
Q Consensus 515 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 567 (765)
.+.|++++++. |.+...+..+.. |...+.......+.++++ ..+|+-
T Consensus 446 leay~eale~d----p~~~e~~~~~~r-c~~a~~~~~~~ee~~~r~-~~dpev 492 (539)
T KOG0548|consen 446 LEAYQEALELD----PSNAEAIDGYRR-CVEAQRGDETPEETKRRA-MADPEV 492 (539)
T ss_pred HHHHHHHHhcC----chhHHHHHHHHH-HHHHhhcCCCHHHHHHhh-ccCHHH
Confidence 88888888887 566555555544 444434444455555553 345543
No 42
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.93 E-value=1.3e-21 Score=203.06 Aligned_cols=584 Identities=13% Similarity=0.039 Sum_probs=391.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHH--------------------------HHcCCHHHHHHH
Q 004249 94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVH--------------------------DALGNTAKAMGC 147 (765)
Q Consensus 94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~--------------------------~~~g~~~~A~~~ 147 (765)
..+.+.+......|..|...+.......-+ .+.+..+..|+ ..+++...|...
T Consensus 402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~n-d~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~a 480 (1238)
T KOG1127|consen 402 QRAKGLAPIEANVYTDAAITLDLVSSLSFN-DDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHA 480 (1238)
T ss_pred hhhcchhHHHHhhchHHHHHHHHHHHhhcC-chhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 345566667777888888887777665422 11111111111 234567889999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-
Q 004249 148 YWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN- 226 (765)
Q Consensus 148 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 226 (765)
|-++++++|....+|..||.+|....+...|..+|.+|.++++.+..+.-..+..|....+++.|....-.+-+..|..
T Consensus 481 li~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 481 LIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999977776666644
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 004249 227 -IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKI 305 (765)
Q Consensus 227 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 305 (765)
...|..+|-.|...++..+|+..|+.+++.+|.+.. .|..+|.+|...|++..|++.|.++..+ .|......+
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n--~W~gLGeAY~~sGry~~AlKvF~kAs~L----rP~s~y~~f 634 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN--LWLGLGEAYPESGRYSHALKVFTKASLL----RPLSKYGRF 634 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHH--HHHHHHHHHHhcCceehHHHhhhhhHhc----CcHhHHHHH
Confidence 345667999999999999999999999999999988 7889999999999999999999999999 888999999
Q ss_pred HHHHHHHhcCChhHHHHHHHhhcccCC------CChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc-------------
Q 004249 306 KAGICHIQLGNTDKAEILLTAIHWENV------SDHAESINEIADLFKNRELYSTALKYYHMLEANA------------- 366 (765)
Q Consensus 306 ~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------- 366 (765)
..+......|++.+|+..+..++.... ....+.+...+..+...|-..+|..++++.+..-
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999999988764331 1122333444433344444444444444433220
Q ss_pred --------------CCC-----------------------------------------CCHHHHHHHHHHHHH-------
Q 004249 367 --------------GVH-----------------------------------------NDGCLHLKIAECSLA------- 384 (765)
Q Consensus 367 --------------~~~-----------------------------------------~~~~~~~~la~~~~~------- 384 (765)
..| ..+..|+++|.-|.+
T Consensus 715 ~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC
Confidence 000 113456666666655
Q ss_pred -hccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHH
Q 004249 385 -LKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYK 463 (765)
Q Consensus 385 -~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (765)
+.+...|+.++.+++++..++...|..||.+ ...|++.-|...|-+....+|.. ...|..+|.+..
T Consensus 795 t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~------------~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTC------------HCQWLNLGVLVL 861 (1238)
T ss_pred cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccc------------hhheeccceeEE
Confidence 1223467788888888888888888888777 55577888888887777777766 566777777777
Q ss_pred hcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhc
Q 004249 464 AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQI 543 (765)
Q Consensus 464 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 543 (765)
...+++-|-..+..+.. .+|.+...+...+.+....|+.-++..+|...-.++...-..-....+......
T Consensus 862 ~n~d~E~A~~af~~~qS---------LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQS---------LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred ecccHHHhhHHHHhhhh---------cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 78888877777766653 677888888888888888888888888887754444221111111222222224
Q ss_pred ccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHH
Q 004249 544 PCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAA 623 (765)
Q Consensus 544 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~ 623 (765)
....|+++.-+...+++. .+.-.+.+....+|+...++...|......+.|..|.
T Consensus 933 h~~Ng~~e~~I~t~~ki~-------------------------sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ 987 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKIS-------------------------SASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAAL 987 (1238)
T ss_pred HHhccchHHHHHHhhhhh-------------------------hhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHH
Confidence 445555554444433322 2233344556678888888888888888888888888
Q ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCC-CchHHHhHHHHHHHhch
Q 004249 624 REYLEAYKLL------PENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAEN-SQEALYNIARAYHHVGL 696 (765)
Q Consensus 624 ~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~ 696 (765)
..+.+.+.+- ...+.+--..|..++..+- +.-..+...+.+. .-|---......+.+|+
T Consensus 988 ela~RliglLe~k~d~sqynvak~~~gRL~lslge--------------fe~A~~a~~~~~~evdEdi~gt~l~lFfknd 1053 (1238)
T KOG1127|consen 988 ELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE--------------FESAKKASWKEWMEVDEDIRGTDLTLFFKND 1053 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc--------------hhhHhhhhcccchhHHHHHhhhhHHHHHHhH
Confidence 8877755321 1122233333444332220 0000111111110 00111111222277899
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 004249 697 VSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHC 763 (765)
Q Consensus 697 ~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l 763 (765)
+.++...|+++|.+..++.+. ....-.++..-.++|..+.|+..+-+++
T Consensus 1054 f~~sl~~fe~aLsis~se~d~------------------vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1054 FFSSLEFFEQALSISNSESDK------------------VVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HHHHHHHHHHHhhhcccccch------------------hhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 999999999999987643211 1223334444456666677777766553
No 43
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.93 E-value=1.4e-19 Score=180.66 Aligned_cols=578 Identities=14% Similarity=0.139 Sum_probs=393.7
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 87 VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
++|.-..+|.++.-.+..++|...+...+.+++..|.+++.+...|..+..+|+.++|..+.+.++..++.+...|..+|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 56666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 167 PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS 246 (765)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 246 (765)
.++....+|++|+.+|+.|+..+|+|...+..++.+..++++++.....-.+.++..|..-..|...+..+.-.|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004249 247 VDILEDYLKGHPTEADF------GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA 320 (765)
Q Consensus 247 ~~~~~~~~~~~p~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 320 (765)
...++...+.....++. ........+....|.+++|++.+..-... .-+........+.++.+++++++|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99988877655222221 12234455566667777777776654433 233344455667777888888888
Q ss_pred HHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHH-HHHHHHHh----------------------------------c
Q 004249 321 EILLTAIHWENVSDHAESINEIADLFKNRELYSTAL-KYYHMLEA----------------------------------N 365 (765)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~----------------------------------~ 365 (765)
...+..++..+ |++...+..+-.++....+--+++ ..|...-+ .
T Consensus 239 ~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 239 VKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 88888877766 666555444443332111111111 11111100 0
Q ss_pred c---------------------------------------------CCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 366 A---------------------------------------------GVHNDG--CLHLKIAECSLALKEREKSIIYFYKA 398 (765)
Q Consensus 366 ~---------------------------------------------~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a 398 (765)
+ ..|-.+ ..++.++.-+...|+++.|..+...+
T Consensus 318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0 001122 24466788899999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHH
Q 004249 399 LQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPL 478 (765)
Q Consensus 399 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 478 (765)
+...|.-++.+...|+++...|+.++|...+..+.+.+..+ ..+....|....+.++.++|..++...
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD------------R~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD------------RAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh------------HHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999987766 233347888899999999999988777
Q ss_pred HhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHH
Q 004249 479 VCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVR 558 (765)
Q Consensus 479 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 558 (765)
.++..+.-.-+.+-...-....-|.+|.++|++..|++-|..+-+..... .++...+.. .+.+.|-+..=++.++
T Consensus 466 Tr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~-~~dqfDfht----yc~rk~tlrsYv~ll~ 540 (700)
T KOG1156|consen 466 TREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTW-SEDQFDFHT----YCMRKGTLRSYVELLE 540 (700)
T ss_pred hhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-hhhhhhHHH----HHHhcCcHHHHHHHHH
Confidence 65442211111112222234456788999999999998887776655321 222222221 2223333333233222
Q ss_pred HH--HHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC-C-CCchhhhhhh-----------------hhhhh
Q 004249 559 FM--VKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRD-F-VPPIIISGHQ-----------------FTMIS 617 (765)
Q Consensus 559 ~~--l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~-~~~~~~~g~~-----------------~~~~~ 617 (765)
.- +...|....+.. .+.+...++.+. |+ . .......++. .....
T Consensus 541 ~~d~L~~~p~y~~Aa~--------------~Ai~iYl~l~d~-p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~ 605 (700)
T KOG1156|consen 541 WEDNLRSSPYYLRAAK--------------GAIEIYLRLHDS-PNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAK 605 (700)
T ss_pred HHHhhccChHHHHHHH--------------HHHHHHHHHhcC-cccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112221111111 122222222211 10 0 0000000000 00111
Q ss_pred hHHHHHHHHHHHHhhC---CCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHh
Q 004249 618 HHQDAAREYLEAYKLL---PENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHV 694 (765)
Q Consensus 618 ~~~~A~~~~~~a~~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 694 (765)
.-.++.....+..+-. |+++. +|.-++.. .....+|..|+.......+++.+.+.--..+|...
T Consensus 606 ~~~~~~~~~~~s~~~~~~~~d~~~----~gekL~~t---------~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk 672 (700)
T KOG1156|consen 606 KKKDKKKKEAKSQSGKPVDIDEDP----FGEKLLKT---------EDPLEEARKFLPNLQHKGKEKGETYILSFELYYRK 672 (700)
T ss_pred HHHHHHHhhhccccCCCCCCCCcc----hhhhHhhc---------CChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 1122222222222222 33331 22222211 12345688888888888888989999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcc
Q 004249 695 GLVSLAASYYEKVLAMYQKD 714 (765)
Q Consensus 695 g~~~~A~~~y~k~l~~~~~~ 714 (765)
|.+-.|..+.+++-.+.+.+
T Consensus 673 ~k~~l~~~~~~~~~~~~~~~ 692 (700)
T KOG1156|consen 673 GKFLLALACLNNAEGIHGTH 692 (700)
T ss_pred HHHHHHHHHHHhhhhhcCCC
Confidence 99999999999888887643
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-21 Score=192.48 Aligned_cols=474 Identities=12% Similarity=0.057 Sum_probs=348.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q 004249 133 LVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA 212 (765)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 212 (765)
.-+..+.+|..|+-+-+++..+. .+|.-.+.+|+++.-.|++..|...+..- .+...+..+.+..+.++....++++|
T Consensus 24 r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~a 101 (611)
T KOG1173|consen 24 RDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQA 101 (611)
T ss_pred HHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888999999988877 77777788999999999999888777654 55667788889999999999999999
Q ss_pred HHHHHHH------HHhCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 004249 213 ADVYRQM------VQLCPEN-------------------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVID 267 (765)
Q Consensus 213 ~~~~~~a------l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 267 (765)
..++.+. +...|.+ ....+..|.+|....+.++|...|.+++..++...+ +..
T Consensus 102 l~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~E--a~~ 179 (611)
T KOG1173|consen 102 LLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFE--AFE 179 (611)
T ss_pred HHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHH--HHH
Confidence 9888743 1111111 123445566666666677777777777666665544 222
Q ss_pred HHHHHHHHhccHHHHHHHHHH-----HHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHH-hhcccCCCChHHHHHH
Q 004249 268 LLASMLVQMNAYDRVLKHIEL-----VDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-AIHWENVSDHAESINE 341 (765)
Q Consensus 268 ~l~~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~ 341 (765)
.+....+-.- ++-...+.. .... +.......+.+-. .+. .-+++...-. ..+. ....++++...
T Consensus 180 ~lvs~~mlt~--~Ee~~ll~~l~~a~~~~e----d~e~l~~lyel~~--~k~-~n~~~~~r~~~~sl~-~l~~~~dll~~ 249 (611)
T KOG1173|consen 180 KLVSAHMLTA--QEEFELLESLDLAMLTKE----DVERLEILYELKL--CKN-RNEESLTRNEDESLI-GLAENLDLLAE 249 (611)
T ss_pred HHHHHHhcch--hHHHHHHhcccHHhhhhh----HHHHHHHHHHhhh--hhh-ccccccccCchhhhh-hhhhcHHHHHH
Confidence 2222111110 000111110 0000 0000000111000 000 0000000000 0001 11456788888
Q ss_pred HHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 004249 342 IADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAK 421 (765)
Q Consensus 342 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 421 (765)
.++.++..+++.+-.++++.+++. +|-++..+...-.++...|+..+=...-.+.++..|+.+-.|+.+|..|...|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC
Confidence 999999999999999999999999 777766554444488999998888888888999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHH
Q 004249 422 DEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDL 501 (765)
Q Consensus 422 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 501 (765)
+.+|.++|.++...+|.- +.+|...|..+...|..++|+..|..+.+ ..|....-.+.+
T Consensus 328 ~seARry~SKat~lD~~f------------gpaWl~fghsfa~e~EhdQAmaaY~tAar---------l~~G~hlP~LYl 386 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTF------------GPAWLAFGHSFAGEGEHDQAMAAYFTAAR---------LMPGCHLPSLYL 386 (611)
T ss_pred cHHHHHHHHHHhhcCccc------------cHHHHHHhHHhhhcchHHHHHHHHHHHHH---------hccCCcchHHHH
Confidence 999999999999999887 78899999999999999999999998876 455565666778
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCC----Cc---hhhhHHH
Q 004249 502 CKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHP----HR---LTTWNRY 574 (765)
Q Consensus 502 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p----~~---~~~~~~~ 574 (765)
|.-|.+.++++-|.++|.+|+.+. |.+|..+..++. +.+..+.+.+|..+|+.++..-+ .. ...++++
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~----P~Dplv~~Elgv-vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIA----PSDPLVLHELGV-VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC----CCcchhhhhhhh-eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 888999999999999999999999 888988888888 99999999999999999994322 22 2446788
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004249 575 YKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALIN 649 (765)
Q Consensus 575 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 649 (765)
+.++.+.+.. ..+..++.+.+...|.+...+...|.++...|+++.|+++|.+++-+.|+|..+.-.|+.+.-.
T Consensus 462 GH~~Rkl~~~-~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 462 GHAYRKLNKY-EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 8888776665 6889999999999999999999999999999999999999999999999998888888866554
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.92 E-value=6.5e-22 Score=181.47 Aligned_cols=316 Identities=15% Similarity=0.095 Sum_probs=271.6
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
+.++...+..|..++..|++..|+..|..++..+|++-.+++..|.+|..+|+-.-|+..+.+++++.|+...+....|.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 56888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCH---HH------------HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADPNDF---KL------------KFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM 232 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 232 (765)
+++++|.+++|..-|..++..+|.+. ++ +......+...|+...|+.....++++.|-++..+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 99999999999999999999998543 22 2333445566799999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHH---HHH---
Q 004249 233 GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL---KIK--- 306 (765)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~--- 306 (765)
.+.+|...|++..|+.-++.+-++..++.. .++.++.+++..|+.+.++..++.+++. +|..... +-.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe--~~ykis~L~Y~vgd~~~sL~~iRECLKl----dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTE--GHYKISQLLYTVGDAENSLKEIRECLKL----DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchH--HHHHHHHHHHhhhhHHHHHHHHHHHHcc----CcchhhHHHHHHHHHH
Confidence 999999999999999999999999988887 7889999999999999999999999998 3332221 111
Q ss_pred ------HHHHHHhcCChhHHHHHHHhhcccCCCChH----HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHH
Q 004249 307 ------AGICHIQLGNTDKAEILLTAIHWENVSDHA----ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHL 376 (765)
Q Consensus 307 ------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 376 (765)
-+......+++.++++..+++++.. |..+ .....+..++...|++.+|+..+.+++.. +|++..++.
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~e-p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~ 345 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNE-PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHH
Confidence 1223456778888888888887665 4322 23444567778888999999999999988 899999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004249 377 KIAECSLALKEREKSIIYFYKALQILEDNIDARLTL 412 (765)
Q Consensus 377 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (765)
..|.+|.....|+.|+..|+++.+.++++..+.-.+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 999999999999999999999999999888776554
No 46
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=6.5e-20 Score=186.63 Aligned_cols=512 Identities=15% Similarity=0.101 Sum_probs=369.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHH-----------HHHHHHHhCCHHHHHHHHHHHHHhCC-CC
Q 004249 167 PWLIEQGDTTWAMSCLSEAVKA--------DPNDFKLKFH-----------LASLYVELGNFQRAADVYRQMVQLCP-EN 226 (765)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~-----------la~~~~~~g~~~~A~~~~~~al~~~p-~~ 226 (765)
..+.+.|++.+|.+-+...+.. .|........ +..++...+....++..+.+++...- .+
T Consensus 182 k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~ 261 (799)
T KOG4162|consen 182 KSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPKEAIKSYRRALLRSWSLD 261 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCchHHHHhhhHHhhcccccc
Confidence 3455667888888888877764 2221222111 22334455777888888888865431 11
Q ss_pred H----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHhccH
Q 004249 227 I----------------------EALKMGAKLYQKSGQIESSVDILEDYLKG-----HPTEADFGVIDLLASMLVQMNAY 279 (765)
Q Consensus 227 ~----------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~l~~~~~~~~~~ 279 (765)
+ ........++.-..+.++++-..-..+.. ...+ ..+|-.+.......|++
T Consensus 262 ~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd--~ai~d~Lt~al~~~g~f 339 (799)
T KOG4162|consen 262 PLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQND--AAIFDHLTFALSRCGQF 339 (799)
T ss_pred hhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcch--HHHHHHHHHHHHHHHHH
Confidence 1 11112223333344444554443332221 1112 23677888889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC-CCChHHHHHHHHHH-HHccccHHHHHH
Q 004249 280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN-VSDHAESINEIADL-FKNRELYSTALK 357 (765)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~-~~~~g~~~~A~~ 357 (765)
..+.+.|++++.. .-...+.|+.++.++...|.-..|+.+++...... .|+++..+...+.+ ....|..++++.
T Consensus 340 ~~lae~fE~~~~~----~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegld 415 (799)
T KOG4162|consen 340 EVLAEQFEQALPF----SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLD 415 (799)
T ss_pred HHHHHHHHHHhHh----hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHH
Confidence 9999999999887 56678889999999999999999999999976544 24455555555554 467899999999
Q ss_pred HHHHHHhcc---CCCCCHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHH
Q 004249 358 YYHMLEANA---GVHNDGCLHLKIAECSLALK-----------EREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDE 423 (765)
Q Consensus 358 ~~~~~~~~~---~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 423 (765)
+-.+++... ...-.+..+..+|.+|..+- ...++++.++++++.+|.|+.+.+.++.-|...++.+
T Consensus 416 YA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~ 495 (799)
T KOG4162|consen 416 YAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLT 495 (799)
T ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHH
Confidence 999999841 02234577888888885442 2578999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHH
Q 004249 424 EAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCK 503 (765)
Q Consensus 424 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 503 (765)
.|..+.++++..++.. ++.+|..++.++..++++.+|+.+...++.+ .|+|......-..
T Consensus 496 sAl~~~~eaL~l~~~~-----------~~~~whLLALvlSa~kr~~~Al~vvd~al~E---------~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 496 SALDYAREALALNRGD-----------SAKAWHLLALVLSAQKRLKEALDVVDAALEE---------FGDNHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHHHhcCCc-----------cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---------hhhhhhhchhhhh
Confidence 9999999999985554 3688999999999999999999999999874 3566555555555
Q ss_pred HHHhhhcHHHHHHHHHHHHHhccCCCCc-----hHHHHHHHHhhcccccCChhhHHHHHHHHHHh---------------
Q 004249 504 TLASLHRYEDAIKIINLILKLGYGKFPV-----EKEELYFLGAQIPCNTTDPKLWFDGVRFMVKL--------------- 563 (765)
Q Consensus 504 ~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------------- 563 (765)
+-...++.++|+..+.+.+.+-....+- .-.......+ .....++..+|...++++...
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~-l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAG-LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcc-cccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 5566899999999988888866321110 1122223333 555566777787777776631
Q ss_pred ----CCCchhh-------hHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhh
Q 004249 564 ----HPHRLTT-------WNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKL 632 (765)
Q Consensus 564 ----~p~~~~~-------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 632 (765)
.|..... |...+......+.. +.+..-+....+..|-++..++..|..+...|++.+|...|.-++.+
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~-~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGND-DEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 1222222 22333333333333 23333455666778999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhh
Q 004249 633 LPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQ 712 (765)
Q Consensus 633 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~ 712 (765)
+|+++.+.-.+|.+++..+.++ ..+.-.++....++.|.+++++|++|.++.++|+.+.|...|.-++++.+
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~--------la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPR--------LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcc--------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9999999999999999888443 23334588999999999999999999999999999999999999999988
Q ss_pred cc
Q 004249 713 KD 714 (765)
Q Consensus 713 ~~ 714 (765)
.+
T Consensus 786 S~ 787 (799)
T KOG4162|consen 786 SN 787 (799)
T ss_pred CC
Confidence 65
No 47
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.9e-21 Score=187.41 Aligned_cols=405 Identities=14% Similarity=0.072 Sum_probs=310.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 004249 129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN 208 (765)
Q Consensus 129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 208 (765)
...|...+..|+++.|+.+|..++.++|.+...+.+...+|..+|+|++|+.--.+.++++|+.+..|..+|..+.-+|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 45688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------HHHHHHHHHHHHhcCCCCCCHH
Q 004249 209 FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ------------------------IESSVDILEDYLKGHPTEADFG 264 (765)
Q Consensus 209 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~~~~~~p~~~~~~ 264 (765)
|++|+..|.+.++.+|++...+..++.++..... .+.+.......+..+|.+..
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~-- 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK-- 163 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh--
Confidence 9999999999999999999999999888732200 11111222222223333221
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-------HHh---cCCCC------------c---------cHHHHHHHHHHHHh
Q 004249 265 VIDLLASMLVQMNAYDRVLKHIELVD-------LVY---YSGKE------------L---------LLALKIKAGICHIQ 313 (765)
Q Consensus 265 ~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~---~~~~~------------~---------~~~~~~~l~~~~~~ 313 (765)
.+.. -.+...|.-.+..+- ... +...| . .......+|.....
T Consensus 164 ~~l~-------d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 164 LYLN-------DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cccc-------cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 0000 001111111111000 000 00000 0 12235778999999
Q ss_pred cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC-------HHHHHHHHHHHHHhc
Q 004249 314 LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND-------GCLHLKIAECSLALK 386 (765)
Q Consensus 314 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g 386 (765)
..++..|+..+..++... .+...+.+.+-+++..|.+.+.+.....+++.+ ... ......+|..|...+
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g--re~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG--RELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh--HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999998765 667788999999999999999999998887762 221 234445677888899
Q ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcc
Q 004249 387 EREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKG 466 (765)
Q Consensus 387 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 466 (765)
+++.|+.+|.+++..... ..++......+++....+...-.+|.- ..-....|..+++.|
T Consensus 313 ~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~------------A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK------------AEEEREKGNEAFKKG 372 (539)
T ss_pred hHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH------------HHHHHHHHHHHHhcc
Confidence 999999999998876544 445555666667766666555544443 233445699999999
Q ss_pred hhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccc
Q 004249 467 MIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCN 546 (765)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 546 (765)
++..|+..|.++|. .+|++...+.+.|.+|.++|.+..|+.-.++++++. |+........+. ++..
T Consensus 373 dy~~Av~~YteAIk---------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~----p~~~kgy~RKg~-al~~ 438 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIK---------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD----PNFIKAYLRKGA-ALRA 438 (539)
T ss_pred CHHHHHHHHHHHHh---------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----chHHHHHHHHHH-HHHH
Confidence 99999999999997 789999999999999999999999999999999998 666666666666 9999
Q ss_pred cCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhh
Q 004249 547 TTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSR 580 (765)
Q Consensus 547 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 580 (765)
..+|+.|.+.|..+++.+|++..+...+..+...
T Consensus 439 mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999988888877764
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=1.5e-20 Score=172.61 Aligned_cols=325 Identities=15% Similarity=0.136 Sum_probs=194.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249 157 KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL 236 (765)
Q Consensus 157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 236 (765)
.+..-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|...|+-.-|+..+.+++++.|+...+....|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34445555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC
Q 004249 237 YQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGN 316 (765)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (765)
+.++|.+++|..-|..++..+|++.... ..+.++--.++-. ........+...|+
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~------eaqskl~~~~e~~-------------------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVL------EAQSKLALIQEHW-------------------VLVQQLKSASGSGD 170 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhH------HHHHHHHhHHHHH-------------------HHHHHHHHHhcCCc
Confidence 6666666666666666666666543200 0000000000000 01111222344455
Q ss_pred hhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249 317 TDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFY 396 (765)
Q Consensus 317 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 396 (765)
...|+.....++... |.+...+...+.+|...|+...|+.-+..+.++ ..++.+.++.++.+++..|+.+.++...+
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 555555555555444 455555555556666666666666666555555 45555556666666666666666666666
Q ss_pred HHHHHcCCCHHHHHH------------HHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHh
Q 004249 397 KALQILEDNIDARLT------------LASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA 464 (765)
Q Consensus 397 ~al~~~p~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (765)
.+++++|+....+-. -+.-..+.+++.++++..++.++.+|.... ....++..++.++..
T Consensus 248 ECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~--------ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 248 ECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM--------IRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc--------eeeeeeheeeecccc
Confidence 666665554322111 122234456777777777777777666300 011334466777888
Q ss_pred cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249 465 KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGY 526 (765)
Q Consensus 465 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 526 (765)
.|++.+|++...+++. .+|++.+++...+.+|.-...|+.|+.-|++|.++++
T Consensus 320 d~~~~eAiqqC~evL~---------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLD---------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred cCCHHHHHHHHHHHHh---------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 8888888888888876 7788888888888888888888888888888888773
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=1.4e-18 Score=177.10 Aligned_cols=428 Identities=16% Similarity=0.128 Sum_probs=228.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 004249 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC--PENIEALKMGAK 235 (765)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 235 (765)
++..|..+.......|++..+.++|++++...-...+.|+.++.++...|.-..|+..++..+... |.++..+...+.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 344444455555555555555555555554444444555555555555555555555555555544 444444443333
Q ss_pred HHH-HcCCHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHhcCCCCcc
Q 004249 236 LYQ-KSGQIESSVDILEDYLKGH---PTEADFGVIDLLASMLVQM-----------NAYDRVLKHIELVDLVYYSGKELL 300 (765)
Q Consensus 236 ~~~-~~g~~~~A~~~~~~~~~~~---p~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~ 300 (765)
++. ..+.+++++.+..+++... .+......+..+|.+|-.+ ....+++..++++++. ++.+
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~----d~~d 477 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF----DPTD 477 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc----CCCC
Confidence 332 3455555555555555421 1111122344444444322 2344555555555555 4444
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004249 301 LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAE 380 (765)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 380 (765)
+.+.+.++.-|...++.+.|....++++..++..++..|..++.++...+++.+|+.+.+.++.. .|+|.........
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhh
Confidence 45555555555555555555555555555444455555555555555555555555555555554 4444444444444
Q ss_pred HHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHH---------HHcCCHHHHHHhcCCC--------------CCccc
Q 004249 381 CSLALKEREKSIIYFYKALQILEDNIDARLTLASLL---------LEDAKDEEAISLLTPP--------------MSLEN 437 (765)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~--------------~~~~~ 437 (765)
+-...++.++|+......+........+-..+++.- ...++..+|++....+ .....
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 444455555555555555444332222222211100 0001111111111000 00000
Q ss_pred cccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHH
Q 004249 438 KYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKI 517 (765)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 517 (765)
....|.....|+....+|...+..+...+..+++...+.++-. .+|.....++..|.++...|+.++|.+.
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---------~~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---------IDPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---------cchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 1111223335555566677777777777777777666666654 5566666777777777777777777777
Q ss_pred HHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHH--HHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHH
Q 004249 518 INLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFD--GVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNV 595 (765)
Q Consensus 518 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~--~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 595 (765)
|..++.+. |+++.....++. ++...|+...|.. .++.+++.+|.++.+|+
T Consensus 707 f~~Al~ld----P~hv~s~~Ala~-~lle~G~~~la~~~~~L~dalr~dp~n~eaW~----------------------- 758 (799)
T KOG4162|consen 707 FLVALALD----PDHVPSMTALAE-LLLELGSPRLAEKRSLLSDALRLDPLNHEAWY----------------------- 758 (799)
T ss_pred HHHHHhcC----CCCcHHHHHHHH-HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH-----------------------
Confidence 77777766 555556656665 6666666666665 66666666666665555
Q ss_pred HHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHH
Q 004249 596 RAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLIN 640 (765)
Q Consensus 596 ~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 640 (765)
.+|.++...|+.+.|.+.|+-++++.+.+|+.-
T Consensus 759 ------------~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~p 791 (799)
T KOG4162|consen 759 ------------YLGEVFKKLGDSKQAAECFQAALQLEESNPVLP 791 (799)
T ss_pred ------------HHHHHHHHccchHHHHHHHHHHHhhccCCCccc
Confidence 457777788889999999999999999998754
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.8e-17 Score=156.20 Aligned_cols=457 Identities=13% Similarity=0.061 Sum_probs=377.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
.+..++.-|.--..++++..|..+|++++..+..+...|...+.+-++......|...+.+++.+-|.-...|+....+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45667777777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI 249 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 249 (765)
-.+|+...|.++|++.+.-.| +..+|......-.+.+..+.|..+|++.+-.+|+ ...|...+..-.+.|+..-|..+
T Consensus 152 E~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHH
Confidence 999999999999999999988 5688888889999999999999999999988874 56788999999999999999999
Q ss_pred HHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCh---hHHH----
Q 004249 250 LEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNT---DKAE---- 321 (765)
Q Consensus 250 ~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~---- 321 (765)
|+++++...++.. -..+...+..-..+..++.|..+|+-++...|.+ ....++-.....--+-|+. +.++
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~--raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG--RAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 9999987666543 2244467777788889999999999999885532 2234444444444445553 3332
Q ss_pred -HHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCH---------HHHHHHHHH-HHHhccHHH
Q 004249 322 -ILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDG---------CLHLKIAEC-SLALKEREK 390 (765)
Q Consensus 322 -~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~~la~~-~~~~g~~~~ 390 (765)
-.|+..+..+ |.+-++|+..-.+....|+.+.-.+.|++++.. .|... .+|.+.+.. -....+.+.
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 2355566666 888999999999999999999999999999977 44322 122222221 234678999
Q ss_pred HHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcc
Q 004249 391 SIIYFYKALQILEDN----IDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKG 466 (765)
Q Consensus 391 A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 466 (765)
+.+.|+.++++-|.. ...|...+....++.+...|.+++-.++...|.. .++-....+-.+.+
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-------------KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-------------KLFKGYIELELQLR 451 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-------------hHHHHHHHHHHHHh
Confidence 999999999998875 3678888888889999999999999999999987 67777777888899
Q ss_pred hhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccc
Q 004249 467 MIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCN 546 (765)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 546 (765)
.++.....|.+.+. ..|++..++...|..-..+|+.+.|..+|+-|+.... -+.|..++....+.-..
T Consensus 452 efDRcRkLYEkfle---------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLE---------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA---LDMPELLWKAYIDFEIE 519 (677)
T ss_pred hHHHHHHHHHHHHh---------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc---cccHHHHHHHhhhhhhh
Confidence 99999999999986 7899999999999999999999999999998887442 24467777777777788
Q ss_pred cCChhhHHHHHHHHHHhCCCchhhhHHHHHHHh
Q 004249 547 TTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVS 579 (765)
Q Consensus 547 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 579 (765)
.|.++.|...|+++|+..+... +|..++..-.
T Consensus 520 ~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 520 EGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred cchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 9999999999999999988765 8888877654
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.1e-18 Score=162.57 Aligned_cols=449 Identities=12% Similarity=0.013 Sum_probs=297.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--------------------CCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLE--------------------EELPNSYHILGLVHDALGNTAKAMGCYW 149 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 149 (765)
....+...+...+....|..|...|..++.+. |.+.+..+..+.||...++-+.|+....
T Consensus 42 ~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~ 121 (564)
T KOG1174|consen 42 EYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLL 121 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHh
Confidence 34444455677778888889999888887642 2334667888999999999999998877
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249 150 LAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229 (765)
Q Consensus 150 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 229 (765)
...... ..+.....++..+-.-++..++.-.+...+...|--......+... ...-++.+- .--.++...|..++.
T Consensus 122 ~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l--~v~g~e~~S-~~m~~~~~~~~~dwl 197 (564)
T KOG1174|consen 122 QVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLEL--GVNGNEINS-LVMHAATVPDHFDWL 197 (564)
T ss_pred cCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHH--hhcchhhhh-hhhhheecCCCccHH
Confidence 654432 3455666677777777776677666666666544222221111111 111111111 111223334444332
Q ss_pred H---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004249 230 L---KMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIK 306 (765)
Q Consensus 230 ~---~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 306 (765)
+ ..++.++....-+..+..++-.-....|++.. .+..+|.+++..|++++|+..|+++.-. +|......-.
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~Nvh--Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~----dpy~i~~MD~ 271 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEH--LMMALGKCLYYNGDYFQAEDIFSSTLCA----NPDNVEAMDL 271 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHH--HHHHHhhhhhhhcCchHHHHHHHHHhhC----ChhhhhhHHH
Confidence 2 12233333333344444445555556677666 5667788888888888888888887777 6666666666
Q ss_pred HHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhc
Q 004249 307 AGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALK 386 (765)
Q Consensus 307 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 386 (765)
.|..+...|+++.-..+...++... .....-|+.-+.+++..+++..|+.+-++++.. +|.+..++...|.++...|
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhcc
Confidence 7777777777777777666665443 334556666677777778888888888888887 7888888888888888888
Q ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHH-HHHH-h
Q 004249 387 EREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLC-RIYK-A 464 (765)
Q Consensus 387 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~-~ 464 (765)
+.++|+-.|+.+..+.|-..+.+..|..+|...|++.+|.-.-+.++..-|.+ ++.+..+| .+.. .
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s------------A~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS------------ARSLTLFGTLVLFPD 416 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc------------hhhhhhhcceeeccC
Confidence 88888888888888888888888888888888888888877777776666655 44444553 3322 2
Q ss_pred cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcc
Q 004249 465 KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIP 544 (765)
Q Consensus 465 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 544 (765)
-.--++|...+.+.++ ..|.-..+.+.++..+...|++++++.++++.+... |+ ..+...++++.
T Consensus 417 p~~rEKAKkf~ek~L~---------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D--~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLK---------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PD--VNLHNHLGDIM 481 (564)
T ss_pred chhHHHHHHHHHhhhc---------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----cc--cHHHHHHHHHH
Confidence 2234566666766665 677777888888888888888888888888888766 22 23444555577
Q ss_pred cccCChhhHHHHHHHHHHhCCCchhhhHHHHHHH
Q 004249 545 CNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLV 578 (765)
Q Consensus 545 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 578 (765)
...+.+.+|.+.|..++..+|++......+-.+-
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 7788888888888888888888877777665443
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.88 E-value=4.9e-22 Score=197.00 Aligned_cols=263 Identities=20% Similarity=0.206 Sum_probs=110.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249 163 KLIFPWLIEQGDTTWAMSCLSEAVKA--DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS 240 (765)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 240 (765)
..+|.++...|++++|+.++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 35677777778888888877554433 367777777777777778888888888888877777777777777777 677
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004249 241 GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA 320 (765)
Q Consensus 241 g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 320 (765)
+++++|+.+++++.+..++ +. .+...+.++...++++++...++++... ...+.+...+..+|.++.+.|+.++|
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~--~l~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PR--YLLSALQLYYRLGDYDEAEELLEKLEEL--PAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc-cc--hhhHHHHHHHHHhHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 7788888777777765543 22 3456667777778888888887776654 11245666777778888888888888
Q ss_pred HHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249 321 EILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ 400 (765)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 400 (765)
+..+++++... |+++.+...++.++...|+++++...+...... .|.++..+..+|.++..+|++++|+.+|++++.
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 88888887776 788888889999999999999988888888777 678888889999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249 401 ILEDNIDARLTLASLLLEDAKDEEAISLLTPPMS 434 (765)
Q Consensus 401 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (765)
.+|+++.....+|.++...|+.++|..+..++..
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999998887765
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.6e-18 Score=159.76 Aligned_cols=413 Identities=13% Similarity=0.033 Sum_probs=274.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004249 189 DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDL 268 (765)
Q Consensus 189 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 268 (765)
.|.+.+.....+.+|...++-+.|+..+....... ..+.....++..+..-++-.++.-.+...+...|-- +..
T Consensus 93 ~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~a-----L~~ 166 (564)
T KOG1174|consen 93 EFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMA-----LQV 166 (564)
T ss_pred CcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchH-----HHH
Confidence 34455566666667777777666666655443211 123444555555555555445544455554444421 111
Q ss_pred HHHHH-HHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHH
Q 004249 269 LASML-VQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFK 347 (765)
Q Consensus 269 l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 347 (765)
++-.. ....-++.+--... .+.. ++..+.........+.++.....+.-+..++-...... +.+...+..+|.++.
T Consensus 167 i~~ll~l~v~g~e~~S~~m~-~~~~-~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~l-r~NvhLl~~lak~~~ 243 (564)
T KOG1174|consen 167 IEALLELGVNGNEINSLVMH-AATV-PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTL-RCNEHLMMALGKCLY 243 (564)
T ss_pred HHHHHHHhhcchhhhhhhhh-heec-CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccC-CccHHHHHHHhhhhh
Confidence 11111 11111111111100 0111 11111111112222333332223333333333333333 777888888888888
Q ss_pred ccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249 348 NRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAIS 427 (765)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 427 (765)
..|++++|+..|+++..+ +|......-..|.++...|+++.-.......+........-|+--+..++..+++..|+.
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALN 321 (564)
T ss_pred hhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHH
Confidence 888888888888888877 788888777788888888888888888888887776777778888888888888888888
Q ss_pred hcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHh
Q 004249 428 LLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLAS 507 (765)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 507 (765)
+-+++++.++.+ ..++...|.++...|+.++|+-.|..+.. ..|-..+.+..+..+|..
T Consensus 322 ~~eK~I~~~~r~------------~~alilKG~lL~~~~R~~~A~IaFR~Aq~---------Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 322 FVEKCIDSEPRN------------HEALILKGRLLIALERHTQAVIAFRTAQM---------LAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred HHHHHhccCccc------------chHHHhccHHHHhccchHHHHHHHHHHHh---------cchhhHHHHHHHHHHHHh
Confidence 888888888877 67778888888888888888877777765 667788888888888888
Q ss_pred hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhc-ccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhh
Q 004249 508 LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQI-PCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFS 586 (765)
Q Consensus 508 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 586 (765)
.|++.+|.-..+.+++.. |.+...+-.+|..+ ...-.--++|...+++.+...|....+.+..+.+...-|.. .
T Consensus 381 ~~~~kEA~~~An~~~~~~----~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~-~ 455 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLF----QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT-K 455 (564)
T ss_pred hchHHHHHHHHHHHHHHh----hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc-c
Confidence 888888888888888877 66666666665333 34455567888889999999998888888887777665544 4
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHH
Q 004249 587 KHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLI 639 (765)
Q Consensus 587 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 639 (765)
...+.+.+.+..+|++ ..+..+|.++...+.+++|+.+|..|++++|++.-.
T Consensus 456 D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred hHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 5677777778777755 467889999999999999999999999999998443
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=8.5e-22 Score=195.27 Aligned_cols=260 Identities=20% Similarity=0.300 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249 96 GDASLHYALGRYEEAISVLHEVIRL--EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173 (765)
Q Consensus 96 ~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 173 (765)
..|.+++..|++++|++++.+.+.. .|+++..|..+|.+....|+++.|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 3355555555555555555443322 245555555555555555555555555555555555555555555554 4555
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC--PENIEALKMGAKLYQKSGQIESSVDILE 251 (765)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (765)
++++|+.+++++.+.. .++..+.....++...++++++...+.++.... |.++..+..+|.++.+.|++++|+..++
T Consensus 92 ~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555433 234444445555555555555555555544333 3445555555555555555555555555
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249 252 DYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN 331 (765)
Q Consensus 252 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 331 (765)
++++.+|+++. +...++.++...|+++++...++..... .
T Consensus 171 ~al~~~P~~~~--~~~~l~~~li~~~~~~~~~~~l~~~~~~--------------------------------------~ 210 (280)
T PF13429_consen 171 KALELDPDDPD--ARNALAWLLIDMGDYDEAREALKRLLKA--------------------------------------A 210 (280)
T ss_dssp HHHHH-TT-HH--HHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHcCCCCHH--HHHHHHHHHHHCCChHHHHHHHHHHHHH--------------------------------------C
Confidence 55555555544 3445555555555555555555544444 2
Q ss_pred CCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249 332 VSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ 400 (765)
Q Consensus 332 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 400 (765)
|.++..+..+|.++...|++++|+.+|++++.. .|+++..+..+|.++...|+.++|..++++++.
T Consensus 211 -~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 -PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT-----------------
T ss_pred -cCHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 333445555555555555555555555555555 555555555555555555555555555555543
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.87 E-value=9.7e-19 Score=182.29 Aligned_cols=299 Identities=14% Similarity=0.066 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHH
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPWLIE 171 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~ 171 (765)
..+.+|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3455566666666666666666666666665555555666666666666666666666666555553 344445666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK----MGAKLYQKSGQIESSV 247 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~ 247 (765)
.|+++.|...++++++..|+++.++..++.++...|++++|...+.+..+....++.... ....-+...+..+++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 666666666666666666666666666666666666666666666666655333322211 1111112233333344
Q ss_pred HHHHHHHhcCCCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHH--HHHHHHHHhcCChhHHHHH
Q 004249 248 DILEDYLKGHPTE--ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK--IKAGICHIQLGNTDKAEIL 323 (765)
Q Consensus 248 ~~~~~~~~~~p~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~ 323 (765)
..+..+....|.. ....++..++..+...|++++|...++++++.. |.+.... ..........++.+.+...
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 4555555555421 112245556666666666666666666666652 2221110 1111112223444444444
Q ss_pred HHhhcccCCCChH--HHHHHHHHHHHccccHHHHHHHHHH--HHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249 324 LTAIHWENVSDHA--ESINEIADLFKNRELYSTALKYYHM--LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKAL 399 (765)
Q Consensus 324 ~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 399 (765)
+++.++.. |+++ .+...+|+++...|++++|.++|++ +.+. .|+... +..+|.++.+.|+.++|.+++++++
T Consensus 322 ~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 322 IEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE--QLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc--CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444433 4444 4444455555555555555555552 2222 333222 3344555555555555555555443
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=1.4e-19 Score=195.83 Aligned_cols=271 Identities=12% Similarity=-0.017 Sum_probs=214.0
Q ss_pred hhCCCch--HHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 004249 120 LEEELPN--SYHILGLVHDAL---GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ---------GDTTWAMSCLSEA 185 (765)
Q Consensus 120 ~~p~~~~--~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a 185 (765)
..|.+.+ .++..|...... +.+++|+.+|+++++++|+++.++..+|.++... +++++|+..++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 4455544 244455544433 3467899999999999999999998888877643 3478999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 004249 186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGV 265 (765)
Q Consensus 186 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 265 (765)
++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++.+|.++. .
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~--~ 408 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA--A 408 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh--h
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999776 3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHH
Q 004249 266 IDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADL 345 (765)
Q Consensus 266 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~ 345 (765)
+..++.+++..|++++|+..+++++... .|.....+..+|.++...|++++|...+.++.... +........++..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAE 484 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHH
Confidence 4456666777899999999999988762 24566678889999999999999999998876554 6677788888888
Q ss_pred HHccccHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc
Q 004249 346 FKNRELYSTALKYYHMLEANA-GVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL 402 (765)
Q Consensus 346 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 402 (765)
+...|+ .|...++++++.. ..+.++ .....++.-.|+.+.+..+ +++.+.+
T Consensus 485 ~~~~g~--~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNSE--RALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccHH--HHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 888884 7777777766541 023332 2377888888888888887 7666543
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.86 E-value=5.6e-19 Score=184.07 Aligned_cols=305 Identities=16% Similarity=0.080 Sum_probs=252.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF-KLKFHLASLYV 204 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 204 (765)
......|......|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34456788889999999999999999999998888888899999999999999999999999888875 56677899999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-H-HHHHHHHHHHHHhccHHHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-F-GVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~-~~~~~l~~~~~~~~~~~~A 282 (765)
..|+++.|...++++.+..|+++.++..++.++...|++++|...+.+..+..+.++. . ........-+...+..+++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987544332 1 0111222222444555666
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHH--HHHHHHHHccccHHHHHHHHH
Q 004249 283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESI--NEIADLFKNRELYSTALKYYH 360 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~ 360 (765)
...+..+....+...+....++..++..+...|++++|...+++.++.. |++.... ..........++.+.++..++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 6788888777443344678899999999999999999999999999877 4444321 222333355688899999999
Q ss_pred HHHhccCCCCCH--HHHHHHHHHHHHhccHHHHHHHHH--HHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249 361 MLEANAGVHNDG--CLHLKIAECSLALKEREKSIIYFY--KALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMS 434 (765)
Q Consensus 361 ~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (765)
+.++. .|+++ ..+..+|+++.+.|++++|.++|+ .+++..|+... ...+|.++.+.|+.++|.+++++++.
T Consensus 324 ~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999 99999 889999999999999999999999 57778887655 55999999999999999999987644
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.86 E-value=9e-18 Score=167.83 Aligned_cols=273 Identities=14% Similarity=0.029 Sum_probs=227.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
..++..+.-.+..++|.+.++..+..+...|++++.+...|..+..+|+.++|..+...++..++.+..+|..+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 34555556666779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 004249 206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKH 285 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~ 285 (765)
..+|++|+++|+.|+.+.|+|..++..++.+..++++++.....-.+.++..|.... .|..++..+.-.|++..|...
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra--~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA--SWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998876 688999999999999999999
Q ss_pred HHHHHHHhcCCCCcc-----HHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHH
Q 004249 286 IELVDLVYYSGKELL-----LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH 360 (765)
Q Consensus 286 ~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 360 (765)
++...+... ..+.. .........+....|.+++|.+.+...-... -+........+.++++.+++++|...|.
T Consensus 166 l~ef~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQN-TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 998887742 11221 2234444567788899999998887753222 3334456677899999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHcCC
Q 004249 361 MLEANAGVHNDGCLHLKIAECSLALKEREKSI-IYFYKALQILED 404 (765)
Q Consensus 361 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 404 (765)
.++.. .|++...+..+-.++..-.+--+++ ..|...-+..|.
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 99998 9999988888877776444444444 555555544443
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=7.4e-19 Score=190.14 Aligned_cols=251 Identities=12% Similarity=0.012 Sum_probs=157.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL---------GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI 243 (765)
Q Consensus 173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 243 (765)
+.+++|+.+|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3456777777777777777777766666665533 2366777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 004249 244 ESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEIL 323 (765)
Q Consensus 244 ~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 323 (765)
++|+..|+++++.+|++.. +++.+|.++...|++++|+..++++++. +|........++.+++..|++++|+..
T Consensus 355 ~~A~~~~~~Al~l~P~~~~--a~~~lg~~l~~~G~~~eAi~~~~~Al~l----~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 355 IVGSLLFKQANLLSPISAD--IKYYYGWNLFMAGQLEEALQTINECLKL----DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 7777777777777776655 5666777777777777777777777766 444444444444455566677777777
Q ss_pred HHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcC
Q 004249 324 LTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILE 403 (765)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 403 (765)
+++++...+|.++..+..+|.++...|++++|...+.++... .|....++..++..|...|+ .|...++++++...
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 776665544556666666777777777777777777666555 56666666666666666663 55555555444332
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249 404 DNIDARLTLASLLLEDAKDEEAISLLTPPMS 434 (765)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (765)
....-......++.-.|+.+.+... +++.+
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 2222222255556566666655554 44444
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=5.8e-20 Score=167.67 Aligned_cols=274 Identities=13% Similarity=0.058 Sum_probs=237.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhccC---CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249 133 LVHDALGNTAKAMGCYWLAACYK---QK-------DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL 202 (765)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~a~~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (765)
.+++..++...|-......++.+ |. +......+|.||..+|.+.+|.+.++.+++..| .++.+..++.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHH
Confidence 35566777777776655554432 21 112224599999999999999999999999776 68899999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249 203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A 282 (765)
|.+..+...|+..+.+.+...|.+...+...++++..++++++|.++|+.+++.+|.+.+ +.-.++.-|+..++++-|
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE--aiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE--AIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce--eeeeeeeccccCCChHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 445788889999999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC--CCChHHHHHHHHHHHHccccHHHHHHHHH
Q 004249 283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN--VSDHAESINEIADLFKNRELYSTALKYYH 360 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 360 (765)
+.+|+++++. ...+++.+.++|.|++..++++-++..|++++... +..-.++|+++|.+....|++.-|..+|+
T Consensus 344 lryYRRiLqm----G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 344 LRYYRRILQM----GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred HHHHHHHHHh----cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 9999999999 77889999999999999999999999999987433 24457899999999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249 361 MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL 415 (765)
Q Consensus 361 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 415 (765)
-++.. ++++.+++.++|.+-.+.|+.++|..++..+-...|.-.+..++++.+
T Consensus 420 laL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 420 LALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 99988 899999999999999999999999999999999999877776665543
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=165.14 Aligned_cols=280 Identities=14% Similarity=0.100 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---CC-------CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLE---EE-------LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL 161 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 161 (765)
..+|. .+++...+...|-......+..+ |. +...-..+|.||+.+|-+.+|.+.++.++...| .++.
T Consensus 182 kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dT 258 (478)
T KOG1129|consen 182 KALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDT 258 (478)
T ss_pred HHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhH
Confidence 34455 56788888888888877776653 21 123345789999999999999999999998775 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004249 162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241 (765)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 241 (765)
+..|+.+|.+..+...|+..+...++..|.+...+..++.++..++++++|.++|+.+++.+|.+.++.-.+|.-|+..+
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~ 338 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDN 338 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 004249 242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAE 321 (765)
Q Consensus 242 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 321 (765)
+++-|+.+|+++++..-.++. .+.++|.+.+..++++-++..|++++... ..+....++|+++|.+....|++..|.
T Consensus 339 ~PE~AlryYRRiLqmG~~spe--Lf~NigLCC~yaqQ~D~~L~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 339 NPEMALRYYRRILQMGAQSPE--LFCNIGLCCLYAQQIDLVLPSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred ChHHHHHHHHHHHHhcCCChH--HHhhHHHHHHhhcchhhhHHHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHH
Confidence 999999999999999888887 78899999999999999999999999883 335567889999999999999999999
Q ss_pred HHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004249 322 ILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAE 380 (765)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 380 (765)
.+|+-++..+ +++.+++.++|.+-.+.|+.++|..+++.+... .|.-.+..++++.
T Consensus 416 rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~--~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 416 RCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV--MPDMAEVTTNLQF 471 (478)
T ss_pred HHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--CccccccccceeE
Confidence 9999998877 889999999999999999999999999999888 7877776666554
No 62
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.84 E-value=8e-18 Score=174.30 Aligned_cols=293 Identities=13% Similarity=0.043 Sum_probs=135.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHH-HHHHHHcCCHHHHHHHHHHHhccCCCCHHHH-HHHHHHHHH
Q 004249 94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHIL-GLVHDALGNTAKAMGCYWLAACYKQKDSSLW-KLIFPWLIE 171 (765)
Q Consensus 94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~~la~~~~~ 171 (765)
.+..|...+..|+|+.|.+.+.+..... +++..++.+ +.+....|+++.|..++.++.+.+|++..+. ...+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4455555666666666665554433322 123333333 3344666666666666666666555554222 233566666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHcCCH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK--------MGAKLYQKSGQI 243 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~g~~ 243 (765)
.|++++|...++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.++.... .+........+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 666666666666666666666666666666666666666666666666555444322111 111111111222
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 004249 244 ESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEIL 323 (765)
Q Consensus 244 ~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 323 (765)
+.....++...+..|+++. +...++..+...|+.++|...++++++. .+ ........+ .+..++.++++..
T Consensus 246 ~~l~~~w~~lp~~~~~~~~--~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~-~~~l~~l~~--~l~~~~~~~al~~ 316 (398)
T PRK10747 246 EGLKRWWKNQSRKTRHQVA--LQVAMAEHLIECDDHDTAQQIILDGLKR----QY-DERLVLLIP--RLKTNNPEQLEKV 316 (398)
T ss_pred HHHHHHHHhCCHHHhCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CC-CHHHHHHHh--hccCCChHHHHHH
Confidence 2222333332223333333 3344555555555555555555554443 11 111111111 1122444444444
Q ss_pred HHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249 324 LTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ 400 (765)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 400 (765)
+++.++.. |+++..+..+|.++...|++++|..+|+++++. .|++ ..+..++.++...|+.++|..+|++++.
T Consensus 317 ~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 317 LRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444433 444444444444444444444444444444444 3432 2233344444444444444444444443
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=9.2e-16 Score=147.49 Aligned_cols=475 Identities=12% Similarity=0.058 Sum_probs=304.7
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249 112 SVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN 191 (765)
Q Consensus 112 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 191 (765)
..|+..++.+.-+...|...|.--..++++..|...|++|+..+..+...|...+.+-++......|..++.+++.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 34555555555555666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 004249 192 DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLAS 271 (765)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 271 (765)
-...|+....+-..+|+...|.++|++-+...|+ ..+|......-.+.+..+.|...|++.+-.+|+-. .|...+.
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~---~wikyar 215 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS---NWIKYAR 215 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH---HHHHHHH
Confidence 6666666666666666666666666666666654 34555555555566666666666666665555432 3556666
Q ss_pred HHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcccc
Q 004249 272 MLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNREL 351 (765)
Q Consensus 272 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 351 (765)
.-.+.|+..-|..+|++++..++. +... ...+...|..-..++.
T Consensus 216 FE~k~g~~~~aR~VyerAie~~~~-d~~~-----------------------------------e~lfvaFA~fEe~qkE 259 (677)
T KOG1915|consen 216 FEEKHGNVALARSVYERAIEFLGD-DEEA-----------------------------------EILFVAFAEFEERQKE 259 (677)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhh-HHHH-----------------------------------HHHHHHHHHHHHHHHH
Confidence 666666666666666666655321 1111 1223333333344455
Q ss_pred HHHHHHHHHHHHhccCCCCC--HHHHHHHHHHHHHhcc---HHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 004249 352 YSTALKYYHMLEANAGVHND--GCLHLKIAECSLALKE---REKSI-----IYFYKALQILEDNIDARLTLASLLLEDAK 421 (765)
Q Consensus 352 ~~~A~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~---~~~A~-----~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 421 (765)
++.|.-+|+-++.. -|.+ ...+..+...-.+-|+ .++++ -.|++.++.+|-|.++|+....+....|+
T Consensus 260 ~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~ 337 (677)
T KOG1915|consen 260 YERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGD 337 (677)
T ss_pred HHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCC
Confidence 55555555555544 3433 2233333333333343 22332 35788889999999999999999999999
Q ss_pred HHHHHHhcCCCCCccccccCcccchhhhh-hhHHHHHHHHHH-HhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHH
Q 004249 422 DEEAISLLTPPMSLENKYVNSDKTHAWWL-NIRIKIKLCRIY-KAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLII 499 (765)
Q Consensus 422 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 499 (765)
.+.-.+.|++++..-|.. .....|. -+.+|...+..- ....+.+.+.++|+.++.-... ..-.-..+++
T Consensus 338 ~~~Ire~yErAIanvpp~----~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH-----kkFtFaKiWl 408 (677)
T KOG1915|consen 338 KDRIRETYERAIANVPPA----SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH-----KKFTFAKIWL 408 (677)
T ss_pred HHHHHHHHHHHHccCCch----hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc-----ccchHHHHHH
Confidence 999999999988755443 2222332 222333333221 2356778888888888752111 1223466778
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHh
Q 004249 500 DLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVS 579 (765)
Q Consensus 500 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 579 (765)
..+....++.+...|.+++-.|+..+| .+. .+....- +-.+.++++.....|.+.|...|.+..+|..|+.+-.
T Consensus 409 myA~feIRq~~l~~ARkiLG~AIG~cP----K~K-lFk~YIe-lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 409 MYAQFEIRQLNLTGARKILGNAIGKCP----KDK-LFKGYIE-LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhccCC----chh-HHHHHHH-HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH
Confidence 888888899999999999999999984 332 2222222 6677899999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhh--hhhhhHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 004249 580 RFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQF--TMISHHQDAAREYLEAYKLLPENPLINLCVGT 645 (765)
Q Consensus 580 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 645 (765)
..|+. +++...+.-++....-+.+-++..+.+- ...|.+.+|...|++.++..+.-+ +....|.
T Consensus 483 ~Lgdt-dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 483 SLGDT-DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HhhhH-HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 88887 5666666656655444444444444443 447999999999999999988765 4444443
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=9.7e-17 Score=148.42 Aligned_cols=401 Identities=18% Similarity=0.105 Sum_probs=289.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 100 LHYALGRYEEAISVLHEVIRLEEELP-NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA 178 (765)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 178 (765)
-++...+|..|+.+++-.+..+.... .....+|.|++.+|+|++|+..|.-+.+.+.-+.+.+..|+.+++-+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 35678899999999987775544332 56677899999999999999999998887766778899999999999999999
Q ss_pred HHHHHHHHhc--------------CC------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004249 179 MSCLSEAVKA--------------DP------------NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM 232 (765)
Q Consensus 179 ~~~~~~al~~--------------~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 232 (765)
.....++-+. +. +..+-...++.+.+..-.|++|+++|.+++..+|+....-..
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY 190 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 8876665221 10 111234667778888888999999999999999998888889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH-----------------------
Q 004249 233 GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV----------------------- 289 (765)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------------------- 289 (765)
++.+|.++.-++-+.+++.-.++..|+++- +.+..+...++.=+-..|....+..
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~pdSti--A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFr 268 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQFPDSTI--AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFR 268 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCCCcHH--HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEe
Confidence 999999999999999999999999999876 5556666555542222222222221
Q ss_pred -----HHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcccc-------HHHHHH
Q 004249 290 -----DLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNREL-------YSTALK 357 (765)
Q Consensus 290 -----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~ 357 (765)
++..|+--...+++..+++..|+++++.++|..+.+.+ .|..|.-+...|.+....|+ .+-|.+
T Consensus 269 ngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl----~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL----DPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc----CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 22222222334677888888889999999999888776 26667666667766665554 344555
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccc
Q 004249 358 YYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLEN 437 (765)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (765)
.|+-+-.....-+.......+|.+++-..++++.+.++...-...-++....+.+++.+...|++.+|.+.|-+....+.
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i 424 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI 424 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh
Confidence 55443333223333445566788888888899988888887777777888888899999999999999999877666443
Q ss_pred cccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHH
Q 004249 438 KYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKI 517 (765)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 517 (765)
.+ +..-...+|++|...|+++-|.+.+.+.- ...+....+..++...++.+.+--|.+.
T Consensus 425 kn-----------~~~Y~s~LArCyi~nkkP~lAW~~~lk~~----------t~~e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 425 KN-----------KILYKSMLARCYIRNKKPQLAWDMMLKTN----------TPSERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred hh-----------hHHHHHHHHHHHHhcCCchHHHHHHHhcC----------CchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 12334578899999999999888776542 2334555666677888888888888888
Q ss_pred HHHHHHhccC
Q 004249 518 INLILKLGYG 527 (765)
Q Consensus 518 ~~~al~~~~~ 527 (765)
|...-.+.|.
T Consensus 484 Fd~lE~lDP~ 493 (557)
T KOG3785|consen 484 FDELEILDPT 493 (557)
T ss_pred hhHHHccCCC
Confidence 8877766643
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=4.1e-18 Score=168.67 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249 105 GRYEEAISVLHEVIRLEE----ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMS 180 (765)
Q Consensus 105 g~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (765)
+..+.++..+.+++...| ..+..|+.+|.++...|++++|+..|.++++++|+++.+|..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455667777777775433 2245677778887778888888888888888778777778778888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249 181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG 256 (765)
Q Consensus 181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 256 (765)
.|+++++++|++..++..+|.++...|++++|+..|+++++.+|+++.... ...+....+++++|+..+.+.+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhh
Confidence 888888777877777777887777778888888888888777777763211 122334556777777777665544
No 66
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=1.3e-17 Score=172.81 Aligned_cols=301 Identities=16% Similarity=0.084 Sum_probs=238.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL-IFPWLIEQGDTTWAMSCLSEAVKADPNDFKL-KFHLASLY 203 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~ 203 (765)
...+..|......|++++|.+...+.....+ .+..++. .+.+....|+++.|..++.++.+.+|++..+ ....+.++
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3456678888889999999988888766543 3444444 4666699999999999999999999987543 34559999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HHhccHH
Q 004249 204 VELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML---VQMNAYD 280 (765)
Q Consensus 204 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~---~~~~~~~ 280 (765)
...|+++.|+..++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.++.. .-......+ .......
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998877664331 100111111 1111112
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHH
Q 004249 281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH 360 (765)
Q Consensus 281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 360 (765)
.....+.+..+..+...+....+...++..+...|+.++|...+++.++. +.++......+.+ ..++.++++..++
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~~~l--~~~~~~~al~~~e 318 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLLIPRL--KTNNPEQLEKVLR 318 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHhhc--cCCChHHHHHHHH
Confidence 23344444444434335678889999999999999999999999999873 4455544444443 4599999999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCc
Q 004249 361 MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSL 435 (765)
Q Consensus 361 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (765)
+.++. .|+++..+..+|.++...|++++|..+|+++++..|++. .+..++.++.+.|+.++|..++++++..
T Consensus 319 ~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 319 QQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99998 999999999999999999999999999999999999854 4668999999999999999999987654
No 67
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=6.5e-19 Score=174.20 Aligned_cols=256 Identities=12% Similarity=0.139 Sum_probs=211.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249 94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173 (765)
Q Consensus 94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 173 (765)
-+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHH
Q 004249 174 DTTWAMSCLSEAVKADPNDFKLKFH-------LASLYVELGNFQRAADVYRQMVQLCP--ENIEALKMGAKLYQKSGQIE 244 (765)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~ 244 (765)
.-.+|+.++.+.+...|........ ..........+..-.+.|..+....| .++++...||.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999999999877643321110 00011111224445667777777788 78999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL 324 (765)
Q Consensus 245 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 324 (765)
+|+.+|+.++...|++.. .|+.||-.+....+..+|+..|.+++++ .|....+++++|++++.+|.|++|.++|
T Consensus 448 raiDcf~~AL~v~Pnd~~--lWNRLGAtLAN~~~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYL--LWNRLGATLANGNRSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHhcCCchHH--HHHHhhHHhcCCcccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999999987 8999999999999999999999999999 8888999999999999999999999999
Q ss_pred HhhcccCCC---------ChHHHHHHHHHHHHccccHHHH
Q 004249 325 TAIHWENVS---------DHAESINEIADLFKNRELYSTA 355 (765)
Q Consensus 325 ~~~~~~~~~---------~~~~~~~~la~~~~~~g~~~~A 355 (765)
-.++..... .+..+|..|-.++...++.+-+
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 887643211 1123555555555555555433
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.81 E-value=1.5e-17 Score=145.59 Aligned_cols=208 Identities=17% Similarity=0.181 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249 194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML 273 (765)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 273 (765)
.+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+ ++++.|..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd--VLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD--VLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc--hhhhhhHHH
Confidence 567788888888888888888888888888888888888888888888888888888888888888888 788888888
Q ss_pred HHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHH
Q 004249 274 VQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYS 353 (765)
Q Consensus 274 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 353 (765)
+.+|++++|...|++++.. +..+.....+.++|.|.++.|+++.|...|++.+..+ |+.+.....++...+..|++-
T Consensus 114 C~qg~~~eA~q~F~~Al~~--P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD--PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhC--CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccch
Confidence 8888888888888888876 3456677788888888888888888888888888777 778888888999999999999
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHH
Q 004249 354 TALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDA 408 (765)
Q Consensus 354 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (765)
.|..++++.... .+-..+.+....++-...|+.+.+-.+=.+.....|...+.
T Consensus 191 ~Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 191 PARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999999888777 55677777777888888899988888888888888887654
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.81 E-value=2.2e-17 Score=144.61 Aligned_cols=203 Identities=16% Similarity=0.117 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
-....+.+|..|++.|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249 170 IEQGDTTWAMSCLSEAVKA--DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSV 247 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 247 (765)
+.+|++++|...|++++.. .|..+.++.++|.|..+.|+++.|...|+++++.+|+.+.....++..++..|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999999985 34567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 004249 248 DILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY 294 (765)
Q Consensus 248 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 294 (765)
.++++.....+-. ...+.....+-...|+-+.+-++=.+....+|
T Consensus 194 ~~~~~~~~~~~~~--A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGGAQ--AESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhccccc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999988877743 33666777788888999888888888777743
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.9e-15 Score=149.80 Aligned_cols=470 Identities=13% Similarity=0.090 Sum_probs=311.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE 171 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 171 (765)
..++.....+...|+|++|+....+++...|++..++.....+..+.++|++|+...+.-..... .....+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHH
Confidence 56677778889999999999999999999999999999999999999999999966554332221 22233788999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE 251 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (765)
++..++|+.+++ ..++.+..+....|++++++|+|++|+.+|+..++.+.++.+.......+-.... ..+ . ..
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~ 164 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LL 164 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HH
Confidence 999999999998 4566777789999999999999999999999999887776554433322211110 011 1 33
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh----cCCCCc-------cHHHHHHHHHHHHhcCChhHH
Q 004249 252 DYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVY----YSGKEL-------LLALKIKAGICHIQLGNTDKA 320 (765)
Q Consensus 252 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~-------~~~~~~~l~~~~~~~~~~~~A 320 (765)
+.+...|.+ ....+++.+.++...|+|.+|++.+++++.+. ..++.. -..+...++.++..+|+.++|
T Consensus 165 q~v~~v~e~-syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVPED-SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 334444432 24478899999999999999999999995442 111111 123467788899999999999
Q ss_pred HHHHHhhcccCCCChHHHH---HHHHHHHHccccHH-HHHHHHHHHHhc--------cCCCCCHHHHHHHHHHHHHhccH
Q 004249 321 EILLTAIHWENVSDHAESI---NEIADLFKNRELYS-TALKYYHMLEAN--------AGVHNDGCLHLKIAECSLALKER 388 (765)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~---~~la~~~~~~g~~~-~A~~~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~ 388 (765)
...|..++..++++.+... .++..+-....-++ .++..++..... -.......++.+.+.+.+..+.-
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999887755543322 22221111111111 222222221111 00111223445555555556655
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchh
Q 004249 389 EKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMI 468 (765)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 468 (765)
+.+.+.....-...|...-.-........+...+..|..++....+.+|.. ...+.+.++.+...+|++
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~-----------s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEK-----------SKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCch-----------hHHHHHHHHHHHHhcCCH
Confidence 555555444433334333222223333333447888999998888876664 246788899999999999
Q ss_pred HHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCch--HHHHHHHHhhcccc
Q 004249 469 EGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVE--KEELYFLGAQIPCN 546 (765)
Q Consensus 469 ~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~ 546 (765)
+.|++++......+. .++......+.+.-.+-..+.+.++.+-|..++..++.......+.. ...++..++..-.+
T Consensus 393 ~~A~~il~~~~~~~~--ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWK--SSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhh--hhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 999999884442110 11112233455556666677888888888888888887654322222 22233333336667
Q ss_pred cCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhh
Q 004249 547 TTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEK 583 (765)
Q Consensus 547 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 583 (765)
.|+-++|...++.+++.+|++..++..+...+....-
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCH
Confidence 7999999999999999999999988887777765443
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.81 E-value=2.4e-17 Score=163.18 Aligned_cols=241 Identities=14% Similarity=0.051 Sum_probs=167.6
Q ss_pred HcCCHHHHHHHHHHHhccCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q 004249 137 ALGNTAKAMGCYWLAACYKQ---K-DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA 212 (765)
Q Consensus 137 ~~g~~~~A~~~~~~a~~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 212 (765)
..+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34567888999999986433 3 3577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 213 ADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 213 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
+..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++... ....+....+++++|+..+.+....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~---~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA---LWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999886311 2222344567889999999776644
Q ss_pred hcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCH
Q 004249 293 YYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDG 372 (765)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 372 (765)
.+ +. .+ ..+.+....|+..++ ..+..+.... +....+ .|..+
T Consensus 195 ~~---~~---~~-~~~~~~~~lg~~~~~-~~~~~~~~~~----------------------------~~~~~l--~~~~~ 236 (296)
T PRK11189 195 LD---KE---QW-GWNIVEFYLGKISEE-TLMERLKAGA----------------------------TDNTEL--AERLC 236 (296)
T ss_pred CC---cc---cc-HHHHHHHHccCCCHH-HHHHHHHhcC----------------------------CCcHHH--HHHHH
Confidence 11 11 11 134444555655443 2332222111 111111 23344
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 004249 373 CLHLKIAECSLALKEREKSIIYFYKALQILE-DNIDARLTLASLLLE 418 (765)
Q Consensus 373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 418 (765)
++|+.+|.++...|++++|+.+|+++++.+| +..+.++.+..+...
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 5555666666666666666666666666554 444444444444433
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=4e-17 Score=158.60 Aligned_cols=203 Identities=18% Similarity=0.168 Sum_probs=183.9
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
.......+..|..++..|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 33456677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKAD--PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIES 245 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 245 (765)
++...|++++|+..+++++... +.....+..+|.++...|++++|...+.+++...|.++.++..+|.++...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999853 45677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 246 SVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 246 A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
|+..+++++...|.++. .+..++.++...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAE--SLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998776554 5668889999999999999988776654
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=9.2e-18 Score=166.15 Aligned_cols=262 Identities=16% Similarity=0.096 Sum_probs=210.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ 242 (765)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 242 (765)
+..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCh
Q 004249 243 IESSVDILEDYLKGHPTEADFGV-----IDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNT 317 (765)
Q Consensus 243 ~~~A~~~~~~~~~~~p~~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (765)
-.+|+.++.+-+...|....... ......-......+..-.+.|-.+....+ ....+++...||.+|...|+|
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~--~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP--TKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC--CCCChhHHhhhHHHHhcchHH
Confidence 99999999999887765321000 00000011111223344455555555412 236788889999999999999
Q ss_pred hHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004249 318 DKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYK 397 (765)
Q Consensus 318 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 397 (765)
++|+.+|+.++... |.+..+|..||-.+....+..+|+..|++++++ .|....+++++|.++..+|.|.+|..+|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999998877 888999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHcCCC----------HHHHHHHHHHHHHcCCHHHHHHhc
Q 004249 398 ALQILEDN----------IDARLTLASLLLEDAKDEEAISLL 429 (765)
Q Consensus 398 al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~ 429 (765)
+|.+.+.. ..+|..|-.++...++.|-+....
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 99886541 246777777777777777655544
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.4e-15 Score=139.54 Aligned_cols=267 Identities=15% Similarity=0.094 Sum_probs=221.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-----HHHHHHHHHH
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-----SLWKLIFPWL 169 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~ 169 (765)
+-.|..++-..+.++|++.|.++++.+|...++...||..+...|..+.|+..-+..+. .|+.. .+...||.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999998877665 45433 5677899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHH
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-----IEALKMGAKLYQKSGQIE 244 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~ 244 (765)
+..|-++.|...|....+...--..++..|..+|....+|++|++.-++..++.|.. +..+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999887655567889999999999999999999999999988876 456778888888899999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL 324 (765)
Q Consensus 245 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 324 (765)
.|+..+.++++.+|..... -..+|.+....|+|+.|++.++.+++. +......+...+..||...|+.++....+
T Consensus 198 ~A~~~l~kAlqa~~~cvRA--si~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 198 RARELLKKALQADKKCVRA--SIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred HHHHHHHHHHhhCccceeh--hhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999884 449999999999999999999999887 23345566777888888999999988888
Q ss_pred HhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC
Q 004249 325 TAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND 371 (765)
Q Consensus 325 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 371 (765)
.++.... ..+.+-..++..-....-.+.|..++.+-+.. .|+-
T Consensus 273 ~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~ 315 (389)
T COG2956 273 RRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTM 315 (389)
T ss_pred HHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcH
Confidence 8887654 22445555666666666677777777777766 6644
No 75
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.9e-17 Score=156.58 Aligned_cols=295 Identities=18% Similarity=0.105 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
.......+|..++...+|.+|+..+..++...|++...|...+.++...|++++|....++.++++|..+..+...+.++
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHH---------------hc---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249 170 IEQGDTTWAMSCLSEAV---------------KA---DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al---------------~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 231 (765)
...++..+|...++..- .. .|....+...-+.++...|++++|...--..+++++.+.++++
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~ 207 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY 207 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence 99888888776654211 11 1223455667788888999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004249 232 MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICH 311 (765)
Q Consensus 232 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 311 (765)
..|.+++..++.+.|+..|++++.++|+...... ++. .+.....+..-|.-.
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~------~~~----------------------~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS------ASM----------------------MPKKLEVKKERGNDA 259 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccChhhhhHHh------Hhh----------------------hHHHHHHHHhhhhhH
Confidence 9999999999999999999999999988654211 111 011122233345556
Q ss_pred HhcCChhHHHHHHHhhcccCC---CChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccH
Q 004249 312 IQLGNTDKAEILLTAIHWENV---SDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKER 388 (765)
Q Consensus 312 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 388 (765)
++.|++..|.++|..++..++ ..+...|.+.+.+....|+..+|+...+.++.+ ++....++...|.|+..++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777765552 233567888899999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249 389 EKSIIYFYKALQILEDNIDARLTLASL 415 (765)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~l~~~ 415 (765)
++|++.|+++++...+ .+.+..+...
T Consensus 338 e~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred HHHHHHHHHHHhhccc-cchHHHHHHH
Confidence 9999999999988665 4444443333
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.5e-14 Score=143.56 Aligned_cols=457 Identities=14% Similarity=0.024 Sum_probs=295.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 206 (765)
.++.--..+...|+|++|.+...+.+...|++..+......+.++.++|++|+...+.-......+ ...+..+.|.+++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHc
Confidence 344444566778999999999999999999999999999999999999999996555433222111 2237899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 004249 207 GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHI 286 (765)
Q Consensus 207 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 286 (765)
+..++|+..+. ..++.+..++...|.+++++|+|++|...|+..++.+.++.+... .+.+.... .+...
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~---r~nl~a~~----a~l~~- 161 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER---RANLLAVA----AALQV- 161 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH---HHHHHHHH----HhhhH-
Confidence 99999999998 456666778889999999999999999999999988777655221 11111110 01111
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhc--------ccCCC-Ch-----HHHHHHHHHHHHccccH
Q 004249 287 ELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIH--------WENVS-DH-----AESINEIADLFKNRELY 352 (765)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~-~~-----~~~~~~la~~~~~~g~~ 352 (765)
+.++..+.....+.+..++.+.+++..|++.+|++.+++++ ..+.. +. ..+...++.++...|+.
T Consensus 162 -~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 -QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 02233233345678899999999999999999999999982 11111 11 23677888999999999
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh-c--cH-H-HHHHHHHHHHHHcC----------CCHHHHHHHHHHHH
Q 004249 353 STALKYYHMLEANAGVHNDGCLHLKIAECSLAL-K--ER-E-KSIIYFYKALQILE----------DNIDARLTLASLLL 417 (765)
Q Consensus 353 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~-~-~A~~~~~~al~~~p----------~~~~~~~~l~~~~~ 417 (765)
++|..+|...+.. .|-+.........-.... + ++ + .++..++......+ .-.....+.+.+.+
T Consensus 241 ~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 554432221111111111 0 11 1 12222222211111 11234455666666
Q ss_pred HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhH-HH
Q 004249 418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEH-RL 496 (765)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~-~~ 496 (765)
..+..+.+.+.....-...|... ..+. ...........+..+...+..... .+|.+ ..
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p~~~-----------~~~l-l~~~t~~~~~~~~ka~e~L~~~~~---------~~p~~s~~ 377 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSPESL-----------FPIL-LQEATKVREKKHKKAIELLLQFAD---------GHPEKSKV 377 (652)
T ss_pred HhhhHHHHHHHHHhCCccCchHH-----------HHHH-HHHHHHHHHHHHhhhHHHHHHHhc---------cCCchhHH
Confidence 77888888887766655544430 0111 222222333367788877777664 45555 77
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCC---CchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHH
Q 004249 497 LIIDLCKTLASLHRYEDAIKIINLILKLGYGKF---PVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNR 573 (765)
Q Consensus 497 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 573 (765)
+.+.++...+..|+++.|++++...+..-..+. ...|...-.+.. .+++.++.+-|.+.+..++.....+...-.
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~-l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~- 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVA-LYYKIKDNDSASAVLDSAIKWWRKQQTGSI- 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHH-HHHhccCCccHHHHHHHHHHHHHHhcccch-
Confidence 888889999999999999999984442111111 122444444445 788888888899999888875432211100
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 004249 574 YYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALI 648 (765)
Q Consensus 574 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 648 (765)
+. ...+...+..-...|+-++|...++..++.+|++..+.-++-.+|.
T Consensus 456 --------------~l-------------~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 456 --------------AL-------------LSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA 503 (652)
T ss_pred --------------HH-------------HhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 00 0112223445556689999999999999999999766655555543
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=1.7e-16 Score=154.06 Aligned_cols=197 Identities=14% Similarity=0.103 Sum_probs=150.7
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (765)
+..+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249 205 ELGNFQRAADVYRQMVQLC--PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A 282 (765)
..|++++|+..+++++... |.....+..+|.++...|++++|...+.+++...|.+.. .+..++.++...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE--SLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH--HHHHHHHHHHHcCCHHHH
Confidence 8888888888888887643 344566777788888888888888888888887777654 566778888888888888
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhh
Q 004249 283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAI 327 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 327 (765)
...+++++.. .+.....+..++.++...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT----YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888877776 3444555556666667777777776665554
No 78
>PLN02789 farnesyltranstransferase
Probab=99.75 E-value=1.3e-15 Score=149.78 Aligned_cols=207 Identities=14% Similarity=0.085 Sum_probs=184.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH--HH
Q 004249 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG-NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT--TW 177 (765)
Q Consensus 101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~--~~ 177 (765)
+...+++++|+..+.+++..+|.+..+|...+.++..+| ++++++.++.+++..+|++..+|...+.++...|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 556789999999999999999999999999999999999 689999999999999999999999999999888874 78
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCH----HHHHHHH
Q 004249 178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS---GQI----ESSVDIL 250 (765)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~~ 250 (765)
++.+++++++.+|++..+|..++.++...|++++++..+.++++.+|.+..+|...+.+.... |.+ ++++.+.
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999998776 333 5788889
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 004249 251 EDYLKGHPTEADFGVIDLLASMLVQ----MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ 313 (765)
Q Consensus 251 ~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 313 (765)
.+++..+|++.. +|+.++.++.. .++..+|+..+.+++.. .+....+...++.++..
T Consensus 207 ~~aI~~~P~N~S--aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~----~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPRNES--PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK----DSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCCCcC--HHHHHHHHHhcCCcccccchhHHHHHHHhhcc----cCCcHHHHHHHHHHHHh
Confidence 999999999988 78899999887 45567788888887765 56677777777777764
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2.4e-15 Score=138.01 Aligned_cols=267 Identities=15% Similarity=0.121 Sum_probs=146.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHH
Q 004249 130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND-----FKLKFHLASLYV 204 (765)
Q Consensus 130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~ 204 (765)
..|.-+.-..+.++|+..|..+++.+|...++...||.++.+.|..+.|+.+-+..+. .|+. ..+...||.-|.
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHH
Confidence 3455555566667777777777777776667777777777777777777766655544 2332 245566666677
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHhccHHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF---GVIDLLASMLVQMNAYDR 281 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~~~l~~~~~~~~~~~~ 281 (765)
..|-++.|...|........--..++..|..+|....+|++|++.-++..+..+..... ..+..++..+....+.+.
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 77777777777766665444445566666677777777777777776666666655431 122334444444455555
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHH
Q 004249 282 VLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHM 361 (765)
Q Consensus 282 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 361 (765)
|+..+.++++. ++....+-..+|.+....|+++.|++.++.+++.++.--+.+...+..+|.+.|+.++.+..+.+
T Consensus 199 A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 199 ARELLKKALQA----DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHhh----CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555555555 44444444455555555555555555555554444222333444444455555555555555544
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 362 LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 362 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
+.+. .+ .+.+...++..-....-.+.|..++.+-+...|.
T Consensus 275 ~~~~--~~-g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 275 AMET--NT-GADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHc--cC-CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 4443 22 2233333344444444444444444444444443
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.1e-14 Score=134.91 Aligned_cols=423 Identities=13% Similarity=0.047 Sum_probs=241.4
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004249 136 DALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD 214 (765)
Q Consensus 136 ~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 214 (765)
....+|..|+..++-....+.... .....+|.|++.+|+|++|+..|+-+...+..+.+.+.+++-+++-+|.|.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 345789999999988877664433 5566689999999999999999999988777778899999999999999999987
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 004249 215 VYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY 294 (765)
Q Consensus 215 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 294 (765)
.-.++ |+++-....+-.+-.+.|+-++-...-+. +.-..+ --..++.+.+..-.|++|+++|++++..
T Consensus 113 ~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~-LqD~~E-----dqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 113 IAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSS-LQDTLE-----DQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHH-HhhhHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 76554 66665555555666667765554443332 221111 1236777777777888888888888876
Q ss_pred CCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC----
Q 004249 295 SGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHN---- 370 (765)
Q Consensus 295 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---- 370 (765)
++........++.||.++.-++-+.+.+.-.+... |+.+-+....+...++.=+-..|..-...+.... +..
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~-~~~~~f~ 256 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNI-DQEYPFI 256 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc-cccchhH
Confidence 66666677788888888888888888887777666 6666665555544443322222222222222111 111
Q ss_pred ---------------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHH
Q 004249 371 ---------------------------DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDE 423 (765)
Q Consensus 371 ---------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 423 (765)
-|++..++...|..+++.++|....+. ++|..+.-+...|.+....|+--
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhc
Confidence 234444444444444554444443332 34444444444444444444321
Q ss_pred H-------HHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHH
Q 004249 424 E-------AISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRL 496 (765)
Q Consensus 424 ~-------A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~ 496 (765)
. |.+.|+-+-+..... . .+.-.-.+|.+++-..++++.+..+ ..++. -..++..
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ec-------D---TIpGRQsmAs~fFL~~qFddVl~Yl-nSi~s--------YF~NdD~ 394 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALEC-------D---TIPGRQSMASYFFLSFQFDDVLTYL-NSIES--------YFTNDDD 394 (557)
T ss_pred CcHHHHHHHHHHHHHhccccccc-------c---cccchHHHHHHHHHHHHHHHHHHHH-HHHHH--------HhcCcch
Confidence 1 222222111111100 0 0122233444444444444444222 22211 1112333
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHH
Q 004249 497 LIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYK 576 (765)
Q Consensus 497 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 576 (765)
..++++.+....|++.+|.++|-+.-... -.+....-.+++.||.+.+.++.|.+.+-+. ..|
T Consensus 395 Fn~N~AQAk~atgny~eaEelf~~is~~~----ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~----------- 457 (557)
T KOG3785|consen 395 FNLNLAQAKLATGNYVEAEELFIRISGPE----IKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTP----------- 457 (557)
T ss_pred hhhHHHHHHHHhcChHHHHHHHhhhcChh----hhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCc-----------
Confidence 44556666666666666666654332111 1123333344445666666666555554221 001
Q ss_pred HHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCC
Q 004249 577 LVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPEN 636 (765)
Q Consensus 577 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~ 636 (765)
.+....+-+.++.++..++|--|...|...-.++|+.
T Consensus 458 -----------------------~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 458 -----------------------SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred -----------------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 1112223456788888888989999999888888864
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.74 E-value=2.9e-12 Score=128.40 Aligned_cols=523 Identities=11% Similarity=0.088 Sum_probs=334.0
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 107 YEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK--DSSLWKLIFPWLIEQGDTTWAMSCLSE 184 (765)
Q Consensus 107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 184 (765)
|..--.+|++++..-.+.|.+|.........+|+...-...|.+++..-|- +...|-..-......|-.+-++..|++
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 334445566666666677788888888888888888888888888876653 345666666666677777888888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHH
Q 004249 185 AVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC-------PENIEALKMGAKLYQKSGQIE---SSVDILEDYL 254 (765)
Q Consensus 185 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~---~A~~~~~~~~ 254 (765)
-++..|... -.....+...+++++|.+.+...+..+ +.+-..|..+..+..+.-+.- ..-..++..+
T Consensus 164 YLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 164 YLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 888877653 344556677888888888887776432 334455555555555433222 2233455666
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC--ccHHHHHH--HHHHHHhcC-------------Ch
Q 004249 255 KGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE--LLLALKIK--AGICHIQLG-------------NT 317 (765)
Q Consensus 255 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~--l~~~~~~~~-------------~~ 317 (765)
...++.... .|..||..|.+.|.++.|...|++++...-.-.. .-.+.+.. -..+...++ +.
T Consensus 241 ~rftDq~g~-Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 241 RRFTDQLGF-LWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred ccCcHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 666665443 6778888888888888888888887765211000 00011100 000111111 12
Q ss_pred hHHHHHHHhhc------------ccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC-----CHHHHHHHHH
Q 004249 318 DKAEILLTAIH------------WENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHN-----DGCLHLKIAE 380 (765)
Q Consensus 318 ~~A~~~~~~~~------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~la~ 380 (765)
+-....|+.++ .++ |++..-|.... -+..|+..+-+..|..++..- +|. -...|..+|.
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn-~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQN-PHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcC-CccHHHHHhhh--hhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHH
Confidence 22223333322 233 55566665544 445788899999999888653 443 2368999999
Q ss_pred HHHHhccHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHhcCCCCCcccccc-----Cc-ccchhhhh
Q 004249 381 CSLALKEREKSIIYFYKALQILEDN----IDARLTLASLLLEDAKDEEAISLLTPPMSLENKYV-----NS-DKTHAWWL 450 (765)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-~~~~~~~~ 450 (765)
.|...|+.+.|...|+++.+..-.. ..+|..-|..-.+..+++.|+++++.+........ +. ......+.
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 9999999999999999999875322 46788889999999999999999998876543321 01 11223455
Q ss_pred hhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCC
Q 004249 451 NIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFP 530 (765)
Q Consensus 451 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 530 (765)
..++|..++.+....|-++.-...|.+++. ..--.|.+..+.|..+....-++++.+.|++.+.+.+-
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriid---------LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~--- 543 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIID---------LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW--- 543 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC---
Confidence 678899999999999999999989988885 33456778899999999999999999999999998853
Q ss_pred chHHHH---HHHHhhcccccCChhhHHHHHHHHHHhCCCc-h-hhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCc
Q 004249 531 VEKEEL---YFLGAQIPCNTTDPKLWFDGVRFMVKLHPHR-L-TTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPP 605 (765)
Q Consensus 531 ~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 605 (765)
+....+ |......-+..-..+.|...|+++++..|.. . ..+..|+.+-...|-. ..+...+.++-...+.. -
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLa-r~amsiyerat~~v~~a--~ 620 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLA-RHAMSIYERATSAVKEA--Q 620 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHhcCCHH--H
Confidence 333333 2222223345677899999999999988822 1 1222233333332222 23444444433322111 0
Q ss_pred hhhhhhhhhhhh----hHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHh
Q 004249 606 IIISGHQFTMIS----HHQDAAREYLEAYKLLPENPLINLCVGTALINLAL 652 (765)
Q Consensus 606 ~~~~g~~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 652 (765)
.+-+-++|...- -...-...|++|++.-|++....+++-.+-+...+
T Consensus 621 ~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtkl 671 (835)
T KOG2047|consen 621 RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKL 671 (835)
T ss_pred HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhh
Confidence 122222222210 01233567889999999988877777666665544
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.74 E-value=5.3e-14 Score=146.29 Aligned_cols=140 Identities=11% Similarity=-0.035 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249 336 AESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL 415 (765)
Q Consensus 336 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 415 (765)
..+++.++..|...|++++|+.++++++.. .|..++.++..|.++...|++.+|...++.+..+++.+--+....+..
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 346688899999999999999999999999 999999999999999999999999999999999999999888889999
Q ss_pred HHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHh
Q 004249 416 LLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVC 480 (765)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 480 (765)
+.+.|+.++|.+.+......+.+. .......+-.......|..|.+.|++..|+..|..+.+
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~---~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDP---LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCc---ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999987765544211 00111111122234678999999999999999887775
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.73 E-value=5.1e-15 Score=153.31 Aligned_cols=197 Identities=17% Similarity=0.124 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
.+...|..+...|+.+.|...+.++.+..|.+. +.....+.++...|++++|...+++++..+|++..++.. +..+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 334444455555555555555555555444332 334444555555555555555555555555555544432 3233
Q ss_pred HHcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249 170 IEQGD----TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIES 245 (765)
Q Consensus 170 ~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 245 (765)
...|+ ...+...+.......|....++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 22222 22222222222223344444444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249 246 SVDILEDYLKGHPTEADF--GVIDLLASMLVQMNAYDRVLKHIELVD 290 (765)
Q Consensus 246 A~~~~~~~~~~~p~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~ 290 (765)
|+.++++++...|.++.. ..+..++.++...|++++|+..+++++
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 555555555554432221 123345555555555555555555543
No 84
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.72 E-value=1.6e-12 Score=130.33 Aligned_cols=506 Identities=12% Similarity=0.061 Sum_probs=361.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249 98 ASLHYALGRYEEAISVLHEVIRLEE--ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT 175 (765)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 175 (765)
...++.+|+...-...|.+++..-| .+..+|-..-......|-++-++..|++.++..|...+- ....+...+++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee---yie~L~~~d~~ 185 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE---YIEYLAKSDRL 185 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH---HHHHHHhccch
Confidence 4557788999999999999999887 345677777777788899999999999999999877543 34567789999
Q ss_pred HHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHH
Q 004249 176 TWAMSCLSEAVKA-------DPNDFKLKFHLASLYVELGNFQ---RAADVYRQMVQLCPEN-IEALKMGAKLYQKSGQIE 244 (765)
Q Consensus 176 ~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~ 244 (765)
++|.+.+...+.. .+.+...|..+..+..+.-+.- ....+++..+...++. ...|..||..|.+.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 9999999988764 3455667777777766554332 2335667777777766 457889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHH-HHHHHHH-----HHHHhc-------------cHHHHHHHHHHHHHHhc--------CCC
Q 004249 245 SSVDILEDYLKGHPTEADFG-VIDLLAS-----MLVQMN-------------AYDRVLKHIELVDLVYY--------SGK 297 (765)
Q Consensus 245 ~A~~~~~~~~~~~p~~~~~~-~~~~l~~-----~~~~~~-------------~~~~A~~~~~~~~~~~~--------~~~ 297 (765)
+|...|++++..--.-.++. ++...+. +...++ +.+-....|+..+...+ ..+
T Consensus 266 karDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 266 KARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 99999999987644332211 1111111 111111 12223334444443311 123
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC-----hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC--
Q 004249 298 ELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD-----HAESINEIADLFKNRELYSTALKYYHMLEANAGVHN-- 370 (765)
Q Consensus 298 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 370 (765)
+.+..-|... +-+..|+..+-+..|..++..-.|. -...|..+|..|...|+.+.|..+|+++.... .+.
T Consensus 346 ~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~ 422 (835)
T KOG2047|consen 346 PHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVE 422 (835)
T ss_pred CccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchH
Confidence 4444444443 3456788888888888887543232 24689999999999999999999999999873 232
Q ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC-------------------HHHHHHHHHHHHHcCCHHHHHHhcC
Q 004249 371 -DGCLHLKIAECSLALKEREKSIIYFYKALQILEDN-------------------IDARLTLASLLLEDAKDEEAISLLT 430 (765)
Q Consensus 371 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (765)
-..+|...|..-.+..+++.|...++++... |.. ..+|...+.+....|-++.-...|+
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2578999999999999999999999999865 332 2466777888888899999999999
Q ss_pred CCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHh---
Q 004249 431 PPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLAS--- 507 (765)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~--- 507 (765)
+++++-.-. +++....|..+....-++++.+.|.+-+. +|.-|.-.++++..-..+.+
T Consensus 502 riidLriaT------------Pqii~NyAmfLEeh~yfeesFk~YErgI~-------LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 502 RIIDLRIAT------------PQIIINYAMFLEEHKYFEESFKAYERGIS-------LFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHhcCC------------HHHHHHHHHHHHhhHHHHHHHHHHHcCCc-------cCCCccHHHHHHHHHHHHHHHhc
Confidence 998876555 68888999999999999999999988763 55778888887766555543
Q ss_pred hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCch--hhhHHHHHHHhh-hhhh
Q 004249 508 LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRL--TTWNRYYKLVSR-FEKI 584 (765)
Q Consensus 508 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~~~~-~~~~ 584 (765)
..+.+.|..+|++++..+| |.....+|.+.+..-..-|--..|++.|+++-..-+... ..|+.+..-... .|-
T Consensus 563 g~klEraRdLFEqaL~~Cp---p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv- 638 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCP---PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV- 638 (835)
T ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC-
Confidence 3578999999999999885 556667777777666778999999999999887554331 233333221111 111
Q ss_pred hhHHHHHHHHHHHhcCCCCCch--hhhhhhhhhhhhHHHHHHHHHHHHhhCC
Q 004249 585 FSKHAKLLRNVRAKYRDFVPPI--IISGHQFTMISHHQDAAREYLEAYKLLP 634 (765)
Q Consensus 585 ~~~a~~~~~~~~~~~p~~~~~~--~~~g~~~~~~~~~~~A~~~~~~a~~~~p 634 (765)
......+.+.++.-|++..-- +..+..-...|..+.|...|.-+-++.|
T Consensus 639 -~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 639 -PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred -cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 244566777777777765443 3445555668999999999987766654
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.72 E-value=2.3e-14 Score=148.40 Aligned_cols=314 Identities=14% Similarity=0.027 Sum_probs=234.5
Q ss_pred hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 004249 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKF 197 (765)
Q Consensus 121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 197 (765)
+|+++.++..+|.++...|+++.+...+.++....|.+ .+.....+.++...|++++|...+++++..+|.+..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 79999999999999999999999999999888777644 456777889999999999999999999999999987776
Q ss_pred HHHHHHHHhCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249 198 HLASLYVELGNF----QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML 273 (765)
Q Consensus 198 ~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 273 (765)
. +..+...|++ ..+...+.......|.....+..+|.++...|++++|+..++++++..|++.. ++..+|.++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~--~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW--AVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH--HHHHHHHHH
Confidence 5 5555555444 44444444433566777778888999999999999999999999999999876 678999999
Q ss_pred HHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC-CChHHHHH---HHHHHHHcc
Q 004249 274 VQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENV-SDHAESIN---EIADLFKNR 349 (765)
Q Consensus 274 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~---~la~~~~~~ 349 (765)
...|++++|+.++++++...+.........+..++.++...|++++|+..+++++...+ ........ .+...+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 99999999999999999885543344456788999999999999999999999864442 12222111 222333344
Q ss_pred ccHHHHHHH--H-HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHH
Q 004249 350 ELYSTALKY--Y-HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED---------NIDARLTLASLLL 417 (765)
Q Consensus 350 g~~~~A~~~--~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~ 417 (765)
|....+..+ + .........+.........+.++...|+.++|...++.+...... ........+.++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 433322222 1 111111001223334456888899999999999999887664322 2456677888999
Q ss_pred HcCCHHHHHHhcCCCCCccc
Q 004249 418 EDAKDEEAISLLTPPMSLEN 437 (765)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~~~ 437 (765)
..|++++|...+..++....
T Consensus 319 ~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 319 AEGNYATALELLGPVRDDLA 338 (355)
T ss_pred HcCCHHHHHHHHHHHHHHHH
Confidence 99999999999998887653
No 86
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.7e-16 Score=146.29 Aligned_cols=286 Identities=19% Similarity=0.097 Sum_probs=214.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249 128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG 207 (765)
Q Consensus 128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 207 (765)
....|..++...+|..|+..+..++...|++...|...+.+++..|++++|....++.++++|..+..+...+.++...+
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 34556778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHH
Q 004249 208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHI 286 (765)
Q Consensus 208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 286 (765)
+..+|...++.. .++ ....|+..+++.+..+...+. ..+-..-+.++...|++++|...-
T Consensus 132 ~~i~A~~~~~~~--------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 132 DLIEAEEKLKSK--------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHHhhhh--------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 888888777611 100 112222223332222211111 112224455555556666666655
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC-----------CChHHHHHHHHHHHHccccHHHH
Q 004249 287 ELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENV-----------SDHAESINEIADLFKNRELYSTA 355 (765)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A 355 (765)
-..+++ ++.+.++++..|.++...++.+.|+.+|++.+..++ +.....+..-|.-.++.|++..|
T Consensus 193 ~~ilkl----d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 193 IDILKL----DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHhc----ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 555555 555555555556666666666666666666554431 22234566677888899999999
Q ss_pred HHHHHHHHhccCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 004249 356 LKYYHMLEANAGVHND----GCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTP 431 (765)
Q Consensus 356 ~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (765)
.++|..++.+ +|++ +..|.+++.+..++|+..+|+.....++.++|....++...|.++...+++++|.+.+++
T Consensus 269 ~E~Yteal~i--dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 269 YECYTEALNI--DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHhhcC--CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 7765 457888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccc
Q 004249 432 PMSLENK 438 (765)
Q Consensus 432 ~~~~~~~ 438 (765)
+++...+
T Consensus 347 a~q~~~s 353 (486)
T KOG0550|consen 347 AMQLEKD 353 (486)
T ss_pred HHhhccc
Confidence 9886655
No 87
>PLN02789 farnesyltranstransferase
Probab=99.72 E-value=3.8e-15 Score=146.37 Aligned_cols=220 Identities=13% Similarity=0.118 Sum_probs=176.0
Q ss_pred cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 004249 104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG-DTTWAMSCL 182 (765)
Q Consensus 104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~ 182 (765)
.++|.+|..+|+.++. ..++.++|+..+.+++.++|.+..+|...+.++..+| ++++++..+
T Consensus 33 ~~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~ 95 (320)
T PLN02789 33 TPEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFA 95 (320)
T ss_pred CHHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHH
Confidence 3566777777766554 4578889999999999999999999999999999998 689999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249 183 SEAVKADPNDFKLKFHLASLYVELGNF--QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE 260 (765)
Q Consensus 183 ~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 260 (765)
++++..+|++..+|...+.++...|.. ++++.++.++++.+|++..+|...+.++...|++++++..+.++++.+|.+
T Consensus 96 ~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 96 EDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999988874 788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh---ccH----HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCChhHHHHHHHhhcc
Q 004249 261 ADFGVIDLLASMLVQM---NAY----DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ----LGNTDKAEILLTAIHW 329 (765)
Q Consensus 261 ~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 329 (765)
.. +|+..+.++... |.+ ++++.+..+++.. .|.+..+|..++.++.. .+...+|...+.+++.
T Consensus 176 ~s--AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 176 NS--AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred hh--HHHHHHHHHHhccccccccccHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 88 788888887665 222 4566777777777 56666666666666655 2334455555555544
Q ss_pred cCCCChHHHHHHHHHHHH
Q 004249 330 ENVSDHAESINEIADLFK 347 (765)
Q Consensus 330 ~~~~~~~~~~~~la~~~~ 347 (765)
.. +.++.++..++.++.
T Consensus 250 ~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 250 KD-SNHVFALSDLLDLLC 266 (320)
T ss_pred cc-CCcHHHHHHHHHHHH
Confidence 33 444555555555554
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.70 E-value=3.1e-15 Score=153.13 Aligned_cols=246 Identities=16% Similarity=0.100 Sum_probs=166.9
Q ss_pred hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 004249 120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY--------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA--- 188 (765)
Q Consensus 120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 188 (765)
..|.-..+...++..|...|++++|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45555566666777777777777777777777765 3433444455777777777777777777777765
Q ss_pred -----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004249 189 -----DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP--------ENIEALKMGAKLYQKSGQIESSVDILEDYLK 255 (765)
Q Consensus 189 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 255 (765)
+|.-..++.+||.+|...|++++|..++++++++.. .-...+..++.++...+++++|..+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 233345677777777777777777777777766532 2244566777777777888888887777766
Q ss_pred cC-----CCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc----CCCCccHHHHHHHHHHHHhcCChhHHHHHHH
Q 004249 256 GH-----PTE-ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY----SGKELLLALKIKAGICHIQLGNTDKAEILLT 325 (765)
Q Consensus 256 ~~-----p~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 325 (765)
+. +++ .....+.++|.+|..+|++++|.+++++++.+.. ............+|..+.+.+.+.+|...|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 42 222 1133566788888888888888888888777642 2233345566777777777777777777666
Q ss_pred hhc------ccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249 326 AIH------WENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN 365 (765)
Q Consensus 326 ~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 365 (765)
++. ..+.|+....+.+|+.+|..+|++++|+++.+.++..
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 643 1223455567888888888888888888888887743
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.70 E-value=3.4e-15 Score=152.85 Aligned_cols=251 Identities=17% Similarity=0.154 Sum_probs=208.5
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249 151 AACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA--------DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL 222 (765)
Q Consensus 151 a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 222 (765)
.-...|.-..+...++..|...|+++.|+..++.++.. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34568988888888999999999999999999999988 4444455566999999999999999999999875
Q ss_pred C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCC-HHHHHHHHHHHHHhccHHHHHHHHHH
Q 004249 223 C--------PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT-----EAD-FGVIDLLASMLVQMNAYDRVLKHIEL 288 (765)
Q Consensus 223 ~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 288 (765)
. |.-..++.+||.+|...|++++|..++++++++... .+. ...+..++.++...+++++|+.++++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 3 333567999999999999999999999999876422 121 33577899999999999999999999
Q ss_pred HHHHhc----CCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC-------CCChHHHHHHHHHHHHccccHHHHHH
Q 004249 289 VDLVYY----SGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN-------VSDHAESINEIADLFKNRELYSTALK 357 (765)
Q Consensus 289 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~ 357 (765)
+++++. ..++.....+.++|.++..+|++++|.+++++++... .+.....+..+|..+.+.+++.+|..
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 988754 3344567889999999999999999999999987432 23335678889999999999999999
Q ss_pred HHHHHHhcc-----CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 358 YYHMLEANA-----GVHNDGCLHLKIAECSLALKEREKSIIYFYKALQI 401 (765)
Q Consensus 358 ~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 401 (765)
.|.++..+. ..|+....+.+|+.+|..+|+++.|+++.++++..
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 998876551 24556678999999999999999999999999854
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.69 E-value=7.4e-13 Score=137.83 Aligned_cols=313 Identities=16% Similarity=0.131 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004249 159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQ 238 (765)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 238 (765)
.+.......++...|++++|+..+++....-.+...+.-..|.++..+|++++|...|+..+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 34455556666666666666666666555555556666666666666666666666666666666666666555555542
Q ss_pred HcC-----CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 004249 239 KSG-----QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ 313 (765)
Q Consensus 239 ~~g-----~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 313 (765)
... ..+.-..+|++.....|....+ ..+...+..-..+.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~---~rl~L~~~~g~~F~~~~~----------------------------- 131 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAP---RRLPLDFLEGDEFKERLD----------------------------- 131 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccch---hHhhcccCCHHHHHHHHH-----------------------------
Confidence 221 3444455555555555554331 122222222222222111
Q ss_pred cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc----c---------CCCCCH--HHHHHH
Q 004249 314 LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN----A---------GVHNDG--CLHLKI 378 (765)
Q Consensus 314 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~---------~~~~~~--~~~~~l 378 (765)
.++...+... -|.++..+-.+|....+..-...++...... + ..|... .+++.+
T Consensus 132 --------~yl~~~l~Kg---vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 132 --------EYLRPQLRKG---VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred --------HHHHHHHhcC---CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 1222222211 1223333333333222222222222222111 0 012222 355888
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHH
Q 004249 379 AECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKL 458 (765)
Q Consensus 379 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (765)
|..|...|++++|+++.+++++..|..++.++..|.++...|++.+|...++.+...++.. -.+....
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D------------RyiNsK~ 268 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD------------RYINSKC 268 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh------------HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988876 4566678
Q ss_pred HHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249 459 CRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGY 526 (765)
Q Consensus 459 a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 526 (765)
+..+.+.|++++|.+.+....+...+-..-+.+-...-.....|.+|.+.|++..|++.|..+.+...
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88999999999999888776543211000111112233456788999999999999999999888763
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=4.8e-13 Score=121.41 Aligned_cols=427 Identities=15% Similarity=0.006 Sum_probs=286.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAM 179 (765)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 179 (765)
.+++..+|..|++++..-.+..|.+...+..+|.||+...+|..|-.+|++.-...|......+..+..+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249 180 SCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT 259 (765)
Q Consensus 180 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 259 (765)
.+...+.....-...+....+.+.+..+++..+....++.- ..+......+.|.+.++.|+++.|++-|+.+++...-
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 99887765322223455566777778888888776665542 1255778899999999999999999999999998777
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHH--HHHhhcccCCCChHH
Q 004249 260 EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEI--LLTAIHWENVSDHAE 337 (765)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~~~~~ 337 (765)
.+. +-++++.++++.++++.|+++...+++.--.+.|.. .+|. ..+.+. ....-+......-.+
T Consensus 177 qpl--lAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl-----gIGm-------~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 177 QPL--LAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL-----GIGM-------TTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred Cch--hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc-----Cccc-------eeccCchhcccchHHHHHHHHHH
Confidence 766 667999999999999999999999888733333321 1111 111000 000000000011234
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004249 338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLL 417 (765)
Q Consensus 338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 417 (765)
++...+-++++.|+++.|.+.+..+--.....-+|..+.+++..- ..+++.+...-+.-.+.++|--.+..-++-.+|+
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYC 321 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 566667788899999999887765432221233566777776543 3456777777788888889977788888999999
Q ss_pred HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHH
Q 004249 418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLL 497 (765)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~ 497 (765)
+..-++.|..++-+-.... ..+.....+..+-.+-..+-..++|.+-+..+-.+..+ .-....+
T Consensus 322 KNeyf~lAADvLAEn~~lT----------yk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~------kLRklAi 385 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLT----------YKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE------KLRKLAI 385 (459)
T ss_pred hhHHHhHHHHHHhhCcchh----------HHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 9999999988875433211 22233333333433334455566666555443321100 0000000
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCc
Q 004249 498 IIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHR 567 (765)
Q Consensus 498 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 567 (765)
-......-........|++-|+.++++. ...+...++ ++....++..+...|+...+...++
T Consensus 386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-------LPVlMa~Ak-iyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 386 QVQEARHNRDDEAIRKAVNEYDETLEKY-------LPVLMAQAK-IYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-hhccccccHHHHHHHHHHHhhhccc
Confidence 0000100001112234455555555544 234555566 7888889999999998888765544
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.64 E-value=2.1e-14 Score=138.73 Aligned_cols=187 Identities=13% Similarity=0.052 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH---HH
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS---LW 162 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~ 162 (765)
.....++..|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++..|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455778899999999999999999999999999876 68899999999999999999999999999998775 78
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249 163 KLIFPWLIEQ--------GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA 234 (765)
Q Consensus 163 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 234 (765)
+.+|.++... |++++|+..|++++..+|++..++..+..+....+. .......+|
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR-----------------LAGKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH-----------------HHHHHHHHH
Confidence 8899999876 789999999999999999987665333322211110 012235678
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 235 KLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
.++...|++.+|+..+++++...|+.+. ..++..+|.++...|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888889999999999998888887643 447788899999999999999888877765
No 93
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=6.5e-12 Score=119.71 Aligned_cols=296 Identities=14% Similarity=0.067 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK-DSSLWKLIFPWLI 170 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~ 170 (765)
...+..|..-+..|+|.+|.....+.-+..+.....+..-+.+.-.+|+++.|-.++.++.+..++ ...+....+.+..
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 344555666677788888887777766655555556666667777778888888877777776433 3355666777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HH--HHHHHHH--HHHcCCH--
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI-EA--LKMGAKL--YQKSGQI-- 243 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~--~~~la~~--~~~~g~~-- 243 (765)
..|++..|.....+++...|.++.+......+|...|++......+.+..+..--+. +. +-..+.. +.+.++-
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 778888888888777777787777777777788888888777777777665432221 11 1111111 1111111
Q ss_pred -HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 004249 244 -ESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEI 322 (765)
Q Consensus 244 -~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 322 (765)
+.=..+++..-..-..++. +...++.-+...|+.++|.++.+.+++. .-+.. ....+ -....+++..-++
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~--l~~~~a~~li~l~~~~~A~~~i~~~Lk~----~~D~~-L~~~~--~~l~~~d~~~l~k 315 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPE--LVVAYAERLIRLGDHDEAQEIIEDALKR----QWDPR-LCRLI--PRLRPGDPEPLIK 315 (400)
T ss_pred chHHHHHHHhccHHhhcChh--HHHHHHHHHHHcCChHHHHHHHHHHHHh----ccChh-HHHHH--hhcCCCCchHHHH
Confidence 1112233332222223333 3446666777777777777777777766 11111 11111 1245556666666
Q ss_pred HHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249 323 LLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ 400 (765)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 400 (765)
..++.+... |+++..+..+|.++++.+.|.+|..+|+.+++. .| +...+..+|.++.+.|+..+|.+.+++++.
T Consensus 316 ~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 316 AAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666665555 566666666677766666777777777666665 33 335566666666677776666666666664
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.61 E-value=6.7e-14 Score=135.17 Aligned_cols=190 Identities=12% Similarity=0.025 Sum_probs=156.0
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---H
Q 004249 122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFK---L 195 (765)
Q Consensus 122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 195 (765)
+..+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.++...|++++|+..++++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45568899999999999999999999999999998876 57889999999999999999999999999987765 6
Q ss_pred HHHHHHHHHHh--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 004249 196 KFHLASLYVEL--------GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVID 267 (765)
Q Consensus 196 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 267 (765)
++.+|.++... |++++|+..|++++..+|++..++..+..+....+ .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~---------------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----RL---------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----HH---------------HHHHH
Confidence 88899999876 78999999999999999998765543332211110 00 01234
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249 268 LLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN 331 (765)
Q Consensus 268 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 331 (765)
.+|.++...|++.+|+..+++++..++. .+....+++.+|.++...|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7899999999999999999999998443 46678899999999999999999999999886554
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.61 E-value=2e-14 Score=124.92 Aligned_cols=125 Identities=9% Similarity=0.045 Sum_probs=94.5
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249 112 SVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN 191 (765)
Q Consensus 112 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 191 (765)
..|+++++.+|++ +..+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++..+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4566777777664 5566777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249 192 DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK 239 (765)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 239 (765)
++.+++.+|.++...|++++|+..|++++...|+++..+..++.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777766665543
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.5e-12 Score=116.77 Aligned_cols=384 Identities=12% Similarity=0.008 Sum_probs=254.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
....+-..|.+|+...+|..|..+|++.-...|......+.-+..+++.+.+..|+.........+.-.......-+.+.
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK 122 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 33445566899999999999999999999999998888899999999999999999998877643211224444556677
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI 249 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 249 (765)
+..+++..+....++.-. .++.+.....|-+.++.|+++.|++-|+.+++...-++.+-++++.++++.|+++.|+++
T Consensus 123 Yse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~ 200 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH 200 (459)
T ss_pred cccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence 888899888877766421 256788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC-CCHHHHHHHHHHH-----HHhccH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 004249 250 LEDYLKGHPTE-ADFGVIDLLASML-----VQMNAY-DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEI 322 (765)
Q Consensus 250 ~~~~~~~~p~~-~~~~~~~~l~~~~-----~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 322 (765)
..+.++..-.+ +.. .+|..- ...|+. .-++. ...++....+.++++.|+++.|.+
T Consensus 201 iSEIieRG~r~HPEl----gIGm~tegiDvrsvgNt~~lh~S--------------al~eAfNLKaAIeyq~~n~eAA~e 262 (459)
T KOG4340|consen 201 ISEIIERGIRQHPEL----GIGMTTEGIDVRSVGNTLVLHQS--------------ALVEAFNLKAAIEYQLRNYEAAQE 262 (459)
T ss_pred HHHHHHhhhhcCCcc----CccceeccCchhcccchHHHHHH--------------HHHHHhhhhhhhhhhcccHHHHHH
Confidence 88887653222 221 111110 011111 11111 122334445667888999999988
Q ss_pred HHHhhcccC-CCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 323 LLTAIHWEN-VSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQI 401 (765)
Q Consensus 323 ~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 401 (765)
.+..+-... ..-+|..+.+++..- ..+++.+...-++-++.+ .|--++.+.++-.+|++..-++.|...+-+
T Consensus 263 aLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAE---- 335 (459)
T KOG4340|consen 263 ALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAE---- 335 (459)
T ss_pred HhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhh----
Confidence 887764322 123455666666543 345666677777777777 787778888888888888777777665433
Q ss_pred cCCCH-----HHHHHHHHHHHH-cCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcc-----hhHH
Q 004249 402 LEDNI-----DARLTLASLLLE-DAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKG-----MIEG 470 (765)
Q Consensus 402 ~p~~~-----~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~ 470 (765)
+|+.. ...+.+-..+.- .-..++|.+-+......-. .+..-.-+.+-.... ....
T Consensus 336 n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~--------------~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 336 NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLT--------------EKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhcccHHHHHH
Confidence 34322 223333333332 3356666655543322100 011111122222111 1223
Q ss_pred HHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249 471 FVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGY 526 (765)
Q Consensus 471 A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 526 (765)
+++.|...+. --..+++..+.+++...+|..+.+.|+.....+.
T Consensus 402 ai~~Yd~~LE------------~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 402 AVNEYDETLE------------KYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHHHHH------------HHHHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 3333333332 2234667788999999999999999999988773
No 97
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.58 E-value=1.1e-13 Score=131.12 Aligned_cols=321 Identities=16% Similarity=0.117 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACY------KQKDS 159 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~ 159 (765)
....+-..|..+++.|++...+.+|+.+++....+. .+|..+|.+|+.+++|.+|+++-..-+.+ .-...
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 456667788999999999999999999999877654 57889999999999999999886533322 12233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004249 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADP------NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG 233 (765)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 233 (765)
...-+||..+...|.|++|+.+..+-+.... ....+++++|.+|...|+.-.-..- -+....+.++.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev~--- 168 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEVT--- 168 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHHH---
Confidence 4456789999999999999999888776521 2356889999999887752110000 00000000000
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--CCCccHHHHHHH
Q 004249 234 AKLYQKSGQIESSVDILEDYLKGHPTE----ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYS--GKELLLALKIKA 307 (765)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l 307 (765)
..++.|.++|..-+++.... ..-+++-++|..|+-+|+|+.|+..-+.-+.+... +......++.++
T Consensus 169 -------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNl 241 (639)
T KOG1130|consen 169 -------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNL 241 (639)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhccc
Confidence 01122223332222221110 00113445666666666666666555544433111 011122345556
Q ss_pred HHHHHhcCChhHHHHHHHhhcc-----cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc----CCCCCHHHHHHH
Q 004249 308 GICHIQLGNTDKAEILLTAIHW-----ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA----GVHNDGCLHLKI 378 (765)
Q Consensus 308 ~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l 378 (765)
|.+++-.|+++.|+++|+..+. .+........+.+|..|.-..++++|+.++.+-+.+. .......+++.+
T Consensus 242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL 321 (639)
T KOG1130|consen 242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSL 321 (639)
T ss_pred chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6666666666666666665321 1113345678889999999999999999998877652 123456788999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHc-----CC-CHHHHHHHHHHHHHcCCHHH
Q 004249 379 AECSLALKEREKSIIYFYKALQIL-----ED-NIDARLTLASLLLEDAKDEE 424 (765)
Q Consensus 379 a~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~g~~~~ 424 (765)
|..+...|..++|+.+.+..+++. |. ...+...+...-...|..+.
T Consensus 322 gna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 999999999999999888877653 22 23566777777777776544
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.57 E-value=9.1e-14 Score=120.85 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=115.1
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249 145 MGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP 224 (765)
Q Consensus 145 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 224 (765)
...|+++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788999988875 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 004249 225 ENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM 276 (765)
Q Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 276 (765)
+++.+++.+|.++...|++++|+..|++++...|+++. .+..++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~--~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS--WSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 455666665443
No 99
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=2.2e-11 Score=116.22 Aligned_cols=297 Identities=16% Similarity=0.082 Sum_probs=232.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhC
Q 004249 129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP-NDFKLKFHLASLYVELG 207 (765)
Q Consensus 129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 207 (765)
..-|..-+..|+|.+|.+...+.-+..+...-++..-+.+.-+.|+++.|-.++.++-+..+ +...+....+.+....|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 34466667789999999999999888877778888888999999999999999999999844 34567888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHH--HHHHhccHHHHHH
Q 004249 208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLAS--MLVQMNAYDRVLK 284 (765)
Q Consensus 208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~--~~~~~~~~~~A~~ 284 (765)
++..|.....++++..|.++.++.....+|...|++.+...++.++-+..--+.. ..-+...+. ++-+..+-..+..
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 9999999999999999999999999999999999999999999887765433222 111111111 1112222222222
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHh
Q 004249 285 HIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA 364 (765)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 364 (765)
+....+..+..-...+.+...++.-+...|+.++|.+.....++... ++.....++ ....++...=++..++.++
T Consensus 248 -L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--D~~L~~~~~--~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 -LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW--DPRLCRLIP--RLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred -HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--ChhHHHHHh--hcCCCCchHHHHHHHHHHH
Confidence 22222222222445567777888889999999999999999987652 233222222 2567888888999999998
Q ss_pred ccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCC
Q 004249 365 NAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPM 433 (765)
Q Consensus 365 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (765)
. .|++|..+..+|.++.+.+.+.+|..+|+.+++..|. ...+..+|.++.+.|+..+|.+..+.++
T Consensus 323 ~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 323 Q--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred h--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8 9999999999999999999999999999999998665 5678889999999999999999887765
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.55 E-value=6.9e-13 Score=121.84 Aligned_cols=156 Identities=10% Similarity=0.102 Sum_probs=132.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249 96 GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT 175 (765)
Q Consensus 96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 175 (765)
.-+..|+..|+++......++.. +|.. -+...++.++++..++++++.+|++..+|..+|.++...|++
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence 34567889999988654442221 2211 111267789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 176 TWAMSCLSEAVKADPNDFKLKFHLASLY-VELGN--FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED 252 (765)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (765)
++|+.+|++++.++|+++.++..+|.++ ...|+ +++|...++++++.+|+++.++..+|..+...|++++|+..+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999975 67777 59999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCC
Q 004249 253 YLKGHPTEAD 262 (765)
Q Consensus 253 ~~~~~p~~~~ 262 (765)
+++..|.+..
T Consensus 170 aL~l~~~~~~ 179 (198)
T PRK10370 170 VLDLNSPRVN 179 (198)
T ss_pred HHhhCCCCcc
Confidence 9999888766
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.52 E-value=2.5e-12 Score=116.12 Aligned_cols=182 Identities=18% Similarity=0.135 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEA 185 (765)
Q Consensus 106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 185 (765)
+...+...+-.....+|.+..+ ..++..+...|+-+.+..+..++....|.+......+|...+..|++.+|+..+.++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344666666777788999888 889999999999999999999988888999888888999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 004249 186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGV 265 (765)
Q Consensus 186 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 265 (765)
....|++..+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+.. +
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~--v 204 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR--V 204 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887776665 6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Q 004249 266 IDLLASMLVQMNAYDRVLKHIELVD 290 (765)
Q Consensus 266 ~~~l~~~~~~~~~~~~A~~~~~~~~ 290 (765)
..+++.+....|++++|..+..+-+
T Consensus 205 ~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 205 RQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHhhcCChHHHHhhccccc
Confidence 7799999999999999988765543
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.51 E-value=7.8e-13 Score=121.51 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=119.3
Q ss_pred cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 004249 104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL-IEQGD--TTWAMS 180 (765)
Q Consensus 104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 180 (765)
.++.++++..+++++..+|+++..|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249 181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229 (765)
Q Consensus 181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 229 (765)
.++++++.+|+++.++..+|..+...|++++|+..++++++..|.+..-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999999887543
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.50 E-value=5.1e-12 Score=137.30 Aligned_cols=149 Identities=12% Similarity=0.070 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW 168 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 168 (765)
.....+...+..+...+++++|+.+++..+...|+....++.+|.++.+.+++.++... .++...+.+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~--------- 97 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL--------- 97 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc---------
Confidence 34455666677788999999999999999999999999999999999999987776655 4444433332
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD 248 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 248 (765)
++ .++.++...+...+.+..+++.+|.||-++|+.++|...++++++.+|+++.++.++|..|... ++++|+.
T Consensus 98 -----~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 98 -----KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred -----ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 22 2233333333334444445555555555555555555555555555555555555555555555 5555555
Q ss_pred HHHHHHh
Q 004249 249 ILEDYLK 255 (765)
Q Consensus 249 ~~~~~~~ 255 (765)
++.+++.
T Consensus 171 m~~KAV~ 177 (906)
T PRK14720 171 YLKKAIY 177 (906)
T ss_pred HHHHHHH
Confidence 5555443
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.49 E-value=3.8e-10 Score=132.46 Aligned_cols=388 Identities=14% Similarity=-0.014 Sum_probs=266.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVK-ADPNDFKLKFHLASLYV 204 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~ 204 (765)
..+...+..+...|++.+|+..+..+-.. +.-.......+......|++..+..++..+-. ....++......+.++.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 34555667778888888888766654211 11123344466777788888887777655311 11233445567788888
Q ss_pred HhCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPE---------NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD---FGVIDLLASM 272 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~~~l~~~ 272 (765)
..|++++|...+..+....+. .......++.++...|++++|...+++++...+.... ..+...+|.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 999999999999988764332 1234456778888999999999999999886554332 1245678888
Q ss_pred HHHhccHHHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHhcCChhHHHHHHHhhcccC----C---CChHHHHHHHH
Q 004249 273 LVQMNAYDRVLKHIELVDLVYYSGKEL--LLALKIKAGICHIQLGNTDKAEILLTAIHWEN----V---SDHAESINEIA 343 (765)
Q Consensus 273 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~---~~~~~~~~~la 343 (765)
+...|++++|...+.+++......... .......++.++...|++++|...+.+++... . +.....+..+|
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999998764422221 22355677889999999999999998875421 1 11223456778
Q ss_pred HHHHccccHHHHHHHHHHHHhccC--C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHH----HHH
Q 004249 344 DLFKNRELYSTALKYYHMLEANAG--V-HNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI---DARL----TLA 413 (765)
Q Consensus 344 ~~~~~~g~~~~A~~~~~~~~~~~~--~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~----~l~ 413 (765)
.++...|++++|...+.+++.... . ......+..+|.++...|++++|...+.++....+... .... ...
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 888899999999999998876521 1 12345666789999999999999999999987643221 1111 122
Q ss_pred HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249 414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE 493 (765)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 493 (765)
..+...|+.+.|...+.......+.. . +........++.++...|++++|...+.+++..... .-....
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~-------~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~---~g~~~~ 729 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFAN-------N-HFLQGQWRNIARAQILLGQFDEAEIILEELNENARS---LRLMSD 729 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCcc-------c-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hCchHH
Confidence 44455789999999887665422211 1 111233567888999999999999988888753211 002234
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 004249 494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLG 525 (765)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 525 (765)
...++..+|.++...|+.++|...+.+++.+.
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45677788899999999999999999999877
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.49 E-value=7.6e-12 Score=113.02 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249 141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220 (765)
Q Consensus 141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 220 (765)
...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+...+..+|...+..|++..|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 344666777777889999999 8999999999999999999999998899999999889999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCcc
Q 004249 221 QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELL 300 (765)
Q Consensus 221 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 300 (765)
...|++..+|..+|.+|.+.|+++.|...|.+++++.|.++. +.+++|..+.-.|+++.|..++..+... .+.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad 201 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLS----PAAD 201 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCc
Confidence 999999999999999999999999999999999999999988 7889999999999999999999999887 6667
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhhc
Q 004249 301 LALKIKAGICHIQLGNTDKAEILLTAIH 328 (765)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 328 (765)
..+..+++.+....|++++|.....+-+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 8888899999999999999988776643
No 106
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.8e-11 Score=109.15 Aligned_cols=175 Identities=21% Similarity=0.183 Sum_probs=158.8
Q ss_pred cHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 88 CPEIRRMLGD-ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 88 ~~~~~~~~~~-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
-++...++.+ ..+.+..|+.+-|..++++.....|++..+-...|..+...|++++|+++|...++-+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 3455555543 466788999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---H
Q 004249 167 PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ---I 243 (765)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~ 243 (765)
.+...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++++-+.|.++-.+..+|.+++..|. +
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999988764 6
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 004249 244 ESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 244 ~~A~~~~~~~~~~~p~~~~ 262 (765)
.-|.++|.++++++|.+..
T Consensus 208 ~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHHHHHhChHhHH
Confidence 6799999999999996543
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=1.4e-10 Score=135.95 Aligned_cols=379 Identities=13% Similarity=0.036 Sum_probs=264.7
Q ss_pred HHHHHHHHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hhCCCch
Q 004249 48 RRRFEAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIR-LEEELPN 126 (765)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~ 126 (765)
..+....+..+...|....+.... ......+.........+..+...|++..+...+..+-. ....++.
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a----------~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~ 410 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHA----------LAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPR 410 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH----------HHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcc
Confidence 344445566666667766665544 11111122222334556777888998887777665411 1224455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----
Q 004249 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQK---------DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF---- 193 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---- 193 (765)
.....+.++...|++++|...+..+....+. .......++.++...|++++|...+++++...+...
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 6677888889999999999999887654221 123445578888999999999999999998544322
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----C
Q 004249 194 -KLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE-----A 261 (765)
Q Consensus 194 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~ 261 (765)
.+...+|.++...|++++|...+.+++...... ..++..+|.++...|++++|...+++++...... .
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 355778899999999999999999998764322 2456788999999999999999999988753221 1
Q ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC--CChHH
Q 004249 262 -DFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE-LLLALKIKAGICHIQLGNTDKAEILLTAIHWENV--SDHAE 337 (765)
Q Consensus 262 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~ 337 (765)
....+..+|.++...|++++|...+.+++.......+ .....+..++.++...|++++|...+..+..... .....
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 1223457888999999999999999999887442221 2344566688899999999999999988753211 11111
Q ss_pred HHH----HHHHHHHccccHHHHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHcC------
Q 004249 338 SIN----EIADLFKNRELYSTALKYYHMLEANAGVHNDG----CLHLKIAECSLALKEREKSIIYFYKALQILE------ 403 (765)
Q Consensus 338 ~~~----~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------ 403 (765)
... .....+...|+.+.|..++...... .+... ..+..++.++...|++++|...+++++....
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 111 1224445688999999998776543 22221 2256789999999999999999999988632
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCcccc
Q 004249 404 DNIDARLTLASLLLEDAKDEEAISLLTPPMSLENK 438 (765)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (765)
....++..+|.++...|+.++|...+.++++....
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 12356778999999999999999999998875543
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.45 E-value=1.3e-11 Score=134.24 Aligned_cols=242 Identities=10% Similarity=0.002 Sum_probs=174.6
Q ss_pred hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249 120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL 199 (765)
Q Consensus 120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 199 (765)
.+|.+..++..++..+...|++++|+..++.+++..|+...+++.+|.++.+.+++.++... .++...+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~--------- 94 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS--------- 94 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc---------
Confidence 45777889999999998899999999999999999999999999999988888886666554 4444333
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccH
Q 004249 200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY 279 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 279 (765)
...++ .+++++...+...+++..+++.+|.+|-++|+.++|...|+++++.+|+++. +++++|..|... +.
T Consensus 95 -----~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~--aLNn~AY~~ae~-dL 165 (906)
T PRK14720 95 -----QNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE--IVKKLATSYEEE-DK 165 (906)
T ss_pred -----cccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHh-hH
Confidence 33344 4555555566667788889999999999999999999999999999999988 899999999999 99
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc-CCCChHHHHHHHHHHHHccccHHHHHHH
Q 004249 280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE-NVSDHAESINEIADLFKNRELYSTALKY 358 (765)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~ 358 (765)
++|+.++.+++..+-.........-.....|.....+.+.-..+.+++... ........+.-+-..|...++|++++.+
T Consensus 166 ~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 166 EKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 999999999998832111111111112222222333333333333333221 1122234445555777778888888888
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHH
Q 004249 359 YHMLEANAGVHNDGCLHLKIAECSL 383 (765)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~la~~~~ 383 (765)
++.+++. +|.+..+...++.||.
T Consensus 246 LK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhc--CCcchhhHHHHHHHHH
Confidence 8888888 7888888888888876
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.44 E-value=1e-11 Score=134.45 Aligned_cols=156 Identities=12% Similarity=0.078 Sum_probs=140.9
Q ss_pred CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEA 185 (765)
Q Consensus 106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 185 (765)
...+++.-+....+..|.+++++..||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34445555555566788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249 186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA 261 (765)
Q Consensus 186 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 261 (765)
+..+|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|++++....+-.
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765543
No 110
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=9.3e-11 Score=104.71 Aligned_cols=198 Identities=18% Similarity=0.118 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 105 GRYEEAISVLHEVIRLE------EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA 178 (765)
Q Consensus 105 g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 178 (765)
.+.++-++++.+++... |+....+-....+....|+.+-|..++.+.....|.+..+...-|..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 34444444444444332 233345556667778889999999999998888899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004249 179 MSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHP 258 (765)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 258 (765)
+++|+..++.+|.+..++-....+...+|+.-+|++.+...++.++.+.++|..++.+|...|+|++|.-++++++-..|
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004249 259 TEADFGVIDLLASMLVQMN---AYDRVLKHIELVDLVYYSGKELLLALKIKAG 308 (765)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (765)
.++. .+..+|.+++-.| +..-|.++|.+++++ .+.+...++.+-
T Consensus 186 ~n~l--~f~rlae~~Yt~gg~eN~~~arkyy~~alkl----~~~~~ral~GI~ 232 (289)
T KOG3060|consen 186 FNPL--YFQRLAEVLYTQGGAENLELARKYYERALKL----NPKNLRALFGIY 232 (289)
T ss_pred CcHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh----ChHhHHHHHHHH
Confidence 9876 5668899888776 566789999999998 444444444443
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.42 E-value=4.7e-12 Score=110.29 Aligned_cols=115 Identities=22% Similarity=0.284 Sum_probs=63.0
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249 113 VLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND 192 (765)
Q Consensus 113 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 192 (765)
.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249 193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI 227 (765)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 227 (765)
+..++.+|.++...|++++|+..|+++++.+|++.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 55555555555555555555555555555555443
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.41 E-value=1.2e-11 Score=107.75 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=110.7
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 004249 146 GCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE 225 (765)
Q Consensus 146 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 225 (765)
..+++++..+|++..+...+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 226 NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
++..++.+|.++...|++++|+..++++++.+|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999998876
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.39 E-value=2.3e-10 Score=117.32 Aligned_cols=292 Identities=15% Similarity=0.083 Sum_probs=212.1
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY 203 (765)
Q Consensus 124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 203 (765)
.......++..+...|-...|+..|++. ..|.....||...|+..+|..+..+-++ .|.++..|..+|++.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 3456677888899999999999888764 4577788888889988888888888888 666788888888887
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHH
Q 004249 204 VELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVL 283 (765)
Q Consensus 204 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~ 283 (765)
....-|++|.++.+.. +..+...+|......++|+++...++..++++|-... .|+.+|.+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~--~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG--TWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh--HHHhccHHHHHHhhhHHHH
Confidence 7776677776666554 2346677777777788999999999999999888877 7889999999999999999
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 004249 284 KHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLE 363 (765)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 363 (765)
..|..++.. .|....+|.+++.+|+..++-.+|...++++++-+ ..+..+|.+...+..+.|.+++|++.+.+.+
T Consensus 540 ~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999999888 88888899999999999999999999999988766 7778888888888889999999999999888
Q ss_pred hccCCCCCHHHHHHHHHHHHHh-----ccHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHH-----HcCCHHHHHHh
Q 004249 364 ANAGVHNDGCLHLKIAECSLAL-----KEREKSII-----YFYKALQILEDNIDARLTLASLLL-----EDAKDEEAISL 428 (765)
Q Consensus 364 ~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~-----~~~~al~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~ 428 (765)
.+.....++.+...+....... ++-..+.. .+-+.+..--+.+..|...+..+. ..+..++|.+.
T Consensus 615 ~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~l~~~~~~ek~~~~eka~~~ 694 (777)
T KOG1128|consen 615 DLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYALLYGNGSSEKLDENEKAYRA 694 (777)
T ss_pred HhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhhhccccchhcccccHHHHhh
Confidence 7743444545444443333221 22222222 222333333335555555454221 22445566666
Q ss_pred cCCCCCccc
Q 004249 429 LTPPMSLEN 437 (765)
Q Consensus 429 ~~~~~~~~~ 437 (765)
..+......
T Consensus 695 l~k~~~~~s 703 (777)
T KOG1128|consen 695 LSKAYKCDT 703 (777)
T ss_pred hhhCccccc
Confidence 666555443
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.38 E-value=5.4e-11 Score=128.99 Aligned_cols=150 Identities=11% Similarity=-0.041 Sum_probs=138.5
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 004249 144 AMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC 223 (765)
Q Consensus 144 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 223 (765)
++.-........|.++.++..||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33333344455688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Q 004249 224 PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYS 295 (765)
Q Consensus 224 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 295 (765)
|++..+++.+|.++...|++++|+.+|++++..+|++.. ++..+|.++...|+.++|...|++++....+
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~--~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFEN--GYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999998888777 7889999999999999999999999998543
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=8.2e-12 Score=114.95 Aligned_cols=120 Identities=17% Similarity=0.120 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
...+-.+|..++..++|.+|+..|.++|.++|.++..|...+.+|.++|.++.|++.++.++.++|....+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34455778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHH
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQ 210 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 210 (765)
.+|++.+|+..|+++++++|++......|..+-...++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999877777766665555544
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.37 E-value=2.1e-11 Score=124.77 Aligned_cols=224 Identities=13% Similarity=0.078 Sum_probs=193.5
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 004249 85 KKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL 164 (765)
Q Consensus 85 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 164 (765)
..++|--......|..++..|-...|+.+|++. ..|-....||...|+..+|.....+-++ .|.++..|..
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~ 462 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCL 462 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHH
Confidence 345555555566678899999999999999875 5667788999999999999999999998 6778888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249 165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244 (765)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 244 (765)
+|.+.....-|++|.++.+.. +..+...+|......++|.++..+++..++++|-....|+.+|.+..+.++++
T Consensus 463 LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 888877766666666665543 44577788888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL 324 (765)
Q Consensus 245 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 324 (765)
.|...|..++...|++.. +|++++..|.+.++-.+|...++++++. +..+..+|.+...+....|.+++|++.+
T Consensus 537 ~av~aF~rcvtL~Pd~~e--aWnNls~ayi~~~~k~ra~~~l~EAlKc----n~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAE--AWNNLSTAYIRLKKKKRAFRKLKEALKC----NYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHHHHhhcCCCchh--hhhhhhHHHHHHhhhHHHHHHHHHHhhc----CCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 999999999999999988 8999999999999999999999999998 5677788888888889999999999999
Q ss_pred Hhhcc
Q 004249 325 TAIHW 329 (765)
Q Consensus 325 ~~~~~ 329 (765)
.+++.
T Consensus 611 ~rll~ 615 (777)
T KOG1128|consen 611 HRLLD 615 (777)
T ss_pred HHHHH
Confidence 99763
No 117
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.35 E-value=6.9e-12 Score=119.07 Aligned_cols=290 Identities=13% Similarity=0.073 Sum_probs=203.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHH
Q 004249 130 ILGLVHDALGNTAKAMGCYWLAACYKQKDS----SLWKLIFPWLIEQGDTTWAMSCLSEAVKA------DPNDFKLKFHL 199 (765)
Q Consensus 130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 199 (765)
.-|.-++++|++...+.+|+.+++...++. .+|..||.+|+.+++|++|+++-..=+.+ .-....+.-++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 346778889999999999999999876664 45677899999999999999875443322 22334556788
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249 200 ASLYVELGNFQRAADVYRQMVQLCPE------NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML 273 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 273 (765)
|.++...|.|++|+.+..+-+..... ...+++++|.+|...|+.-.. ..|.... ....
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~---------~~pee~g--~f~~----- 165 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL---------EAPEEKG--AFNA----- 165 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC---------CChhhcc--cccH-----
Confidence 99999999999999888877654322 246788888888887763211 1221111 0000
Q ss_pred HHhccHHHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc---cCC--CChHHHHHHHHHHH
Q 004249 274 VQMNAYDRVLKHIELVDLVYYSG--KELLLALKIKAGICHIQLGNTDKAEILLTAIHW---ENV--SDHAESINEIADLF 346 (765)
Q Consensus 274 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~--~~~~~~~~~la~~~ 346 (765)
.-...++.|.++|..-+++.... ......++-++|..|+-+|+++.|+...+.-+. +.. ...-.++.++|.++
T Consensus 166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 01123455666666655542211 112234566788889999999999988765332 111 12235888999999
Q ss_pred HccccHHHHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcC------CCHHHHHHHHHHH
Q 004249 347 KNRELYSTALKYYHMLEAN----AGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILE------DNIDARLTLASLL 416 (765)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~ 416 (765)
.-.|+++.|+++|+..+.+ +.....+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.||..+
T Consensus 246 iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF 325 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999887654 21233456778999999999999999999998876642 2347888999999
Q ss_pred HHcCCHHHHHHhcCCCCCc
Q 004249 417 LEDAKDEEAISLLTPPMSL 435 (765)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~ 435 (765)
...|..++|+.+.+..++.
T Consensus 326 ~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHLRS 344 (639)
T ss_pred HhhhhHHHHHHHHHHHHHH
Confidence 9999999999888766553
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.33 E-value=5.1e-10 Score=110.07 Aligned_cols=153 Identities=16% Similarity=0.097 Sum_probs=115.2
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249 122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201 (765)
Q Consensus 122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 201 (765)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|.+.+++++..+|..+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHH
Q 004249 202 LYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDR 281 (765)
Q Consensus 202 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~ 281 (765)
++...|++.+|+..+.+.+..+|+++..|..|+..|..+|+..+|. ...++.+...|++++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-------------------~A~AE~~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-------------------LARAEGYALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-------------------HHHHHHHHhCCCHHH
Confidence 7777777777777777777777777777777777777777765542 245556666777777
Q ss_pred HHHHHHHHHHHh
Q 004249 282 VLKHIELVDLVY 293 (765)
Q Consensus 282 A~~~~~~~~~~~ 293 (765)
|+..+..+.+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 777777777663
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.33 E-value=6.9e-11 Score=99.80 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=57.4
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249 122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201 (765)
Q Consensus 122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 201 (765)
++.-+..+.+|..++..|++++|...|+-+...+|.+...|+.||.++..+|++.+|+.+|.+++.++|+++..++.+|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhCCHHHHHHHHHHHHHhC
Q 004249 202 LYVELGNFQRAADVYRQMVQLC 223 (765)
Q Consensus 202 ~~~~~g~~~~A~~~~~~al~~~ 223 (765)
++...|+.+.|...|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 5555555555555555555544
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.31 E-value=6e-11 Score=100.14 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
+.....++..|..++..|++++|..+|+-+...+|.++..|+.||.|+..+|++.+|+..|.+++.++|+++..++.+|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44556667778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q 004249 168 WLIEQGDTTWAMSCLSEAVKAD 189 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~ 189 (765)
|++..|+.+.|...|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888888888888887764
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.31 E-value=2.8e-11 Score=117.74 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004249 230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGI 309 (765)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (765)
....|.++...|++++|++.+.+. .+ .........++...++++.|.+.++.+.+. +++..-.....+.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-----~~--lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~~l~qLa~aw 173 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-----GS--LELLALAVQILLKMNRPDLAEKELKNMQQI----DEDSILTQLAEAW 173 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-----TC--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-----Cc--ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcHHHHHHHHHH
Confidence 334444455555555555444332 11 113334555555555555555555554443 2333333333333
Q ss_pred HHHhcC--ChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcc
Q 004249 310 CHIQLG--NTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKE 387 (765)
Q Consensus 310 ~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 387 (765)
+.+..| .+.+|...|+.+.... +..+.++..++.+.+..|++++|...+.+++.. +|+++.++.+++.+....|+
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~~-~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDKF-GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCCS---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHhCchhHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCC
Confidence 333333 4677777777765443 455666777777777777777777777777766 67777777777777777777
Q ss_pred H-HHHHHHHHHHHHHcCCCH
Q 004249 388 R-EKSIIYFYKALQILEDNI 406 (765)
Q Consensus 388 ~-~~A~~~~~~al~~~p~~~ 406 (765)
. +.+.+++.++...+|.++
T Consensus 251 ~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 251 PTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp TCHHHHHHHHHCHHHTTTSH
T ss_pred ChhHHHHHHHHHHHhCCCCh
Confidence 6 555566666666667654
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.30 E-value=2.6e-11 Score=117.95 Aligned_cols=256 Identities=19% Similarity=0.162 Sum_probs=179.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS 246 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 246 (765)
-++-.|+|..++.-++ ....+| ........+.+++..+|+++..+.-+.. ..+....+...++..+...++-+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHH
Confidence 3556788888876665 222222 2345566777888888887766544433 2233344555666655554566677
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHh
Q 004249 247 VDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTA 326 (765)
Q Consensus 247 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 326 (765)
+..++..+..........+....|.++...|++++|++.+.+. .+.+.......+++.+++++.|.+.++.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7766665543322222224456778888899999999988643 3566677788899999999999999999
Q ss_pred hcccCCCChHHHHHHHHHHHHccc--cHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 327 IHWENVSDHAESINEIADLFKNRE--LYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 327 ~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
+.+.+ .+..-+....+++.+..| .+.+|.-+|+++... .+.++..+..++.++..+|++++|...+.+++..+|.
T Consensus 157 ~~~~~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 157 MQQID-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHCCS-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHhcC-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 86544 555555555556655555 699999999998776 6788999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCH-HHHHHhcCCCCCccccc
Q 004249 405 NIDARLTLASLLLEDAKD-EEAISLLTPPMSLENKY 439 (765)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~ 439 (765)
++++..+++.+....|+. +.+.+++.+....+|..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 999999999999999998 66777888888777765
No 123
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=4.2e-11 Score=110.35 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
+-+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+.+.+|.++|.++.|++-++.++.++|....+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34556677888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249 206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 244 (765)
+|++.+|++.|++++.++|++...+..|..+-...+...
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999887777777666666555
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.6e-08 Score=104.79 Aligned_cols=172 Identities=17% Similarity=0.136 Sum_probs=121.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249 96 GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT 175 (765)
Q Consensus 96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 175 (765)
.-|......|-.++|..+|.+.-+.+ .+-..|...|.+++|.+..+.--.+ .-...+++.|..+...++.
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccH
Confidence 34566778888999999988875543 5667788888888888776532211 1235677888888888888
Q ss_pred HHHHHHHHHHH----------hcCC----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004249 176 TWAMSCLSEAV----------KADP----------NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK 235 (765)
Q Consensus 176 ~~A~~~~~~al----------~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 235 (765)
+.|+++|+++- ..+| .++..|...|..+...|+.+.|+.+|..+-. |+.+..
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~Vr 946 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVR 946 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhhee
Confidence 88888888752 2233 2345667778888888888888888887643 566677
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 236 LYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
+.+-+|+.++|-.+.++. .+.. +.+.+|+.|...|++.+|+.+|.++...
T Consensus 947 I~C~qGk~~kAa~iA~es-----gd~A--AcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEES-----GDKA--ACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred eEeeccCchHHHHHHHhc-----ccHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 777777777776655442 2222 6778899999999999998888876543
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=2.9e-09 Score=104.89 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004249 156 QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK 235 (765)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 235 (765)
|....+++..+..++..|++++|+..+...+...|+|+..+...+.++...++..+|.+.+++++...|..+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45555566666666666666666666666666666666666666666666666666666666666666666555666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249 236 LYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK 284 (765)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~ 284 (765)
.|.+.|++.+|+..++..+..+|+++. .|..+++.|..+|+..+|..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~--~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPN--GWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCch--HHHHHHHHHHHhCchHHHHH
Confidence 666666666666666666666666555 45566666666555544443
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.24 E-value=2e-09 Score=102.29 Aligned_cols=183 Identities=15% Similarity=0.050 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchH---HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNS---YHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWK 163 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 163 (765)
.....+..|..++..|+|++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|+++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 44557788899999999999999999999999988744 48899999999999999999999999988765 6778
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 004249 164 LIFPWLIEQG---------------D---TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE 225 (765)
Q Consensus 164 ~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 225 (765)
.+|.++...+ + ..+|+..|++.+...|+..-+ .+|...+..+-. .
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~---~ 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD---R 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---H
Confidence 8887764443 1 246778888888888876431 111111111100 0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 226 NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELV 289 (765)
Q Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 289 (765)
-..--+..|..|.+.|.+..|+.-++.+++..|+.+. ..++..++..|...|..++|..+....
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1112245677777778888888888888877777654 335667777777778777777766543
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.23 E-value=2.1e-10 Score=116.36 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249 94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173 (765)
Q Consensus 94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 173 (765)
+..+|..++..|+|++|+..|.+++..+|+++.+++.+|.++..+|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206 (765)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 206 (765)
++++|+..|++++.++|+++.+...++.+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888887777776665544
No 128
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.20 E-value=2e-06 Score=91.15 Aligned_cols=227 Identities=14% Similarity=0.070 Sum_probs=164.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMS 180 (765)
Q Consensus 101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (765)
....+++..|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 56789999999999999999999999999999999999999999988887777778888888999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH---------HHHHHH
Q 004249 181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK-SGQIE---------SSVDIL 250 (765)
Q Consensus 181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~---------~A~~~~ 250 (765)
+|++++..+|. .+....+-.+|.+.+.|.+-.+.--+.-+..|+++..+.....++.+ ....+ -|...+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999999998 88888999999999999887777777777889887655544444443 22222 234445
Q ss_pred HHHHhcC-CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc
Q 004249 251 EDYLKGH-PTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHW 329 (765)
Q Consensus 251 ~~~~~~~-p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 329 (765)
++.++.. +-.... -....-.++..+|.+++|.+++..-+... ..+.+..........+...+++.+-.++..+++.
T Consensus 178 ~~~l~~~gk~~s~a-E~~Lyl~iL~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 178 QKLLEKKGKIESEA-EIILYLLILELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHhccCCccchHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5555544 211111 12244455666777888888774322220 0222333333444556666777776666666665
Q ss_pred cC
Q 004249 330 EN 331 (765)
Q Consensus 330 ~~ 331 (765)
..
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 54
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.20 E-value=1.5e-09 Score=100.82 Aligned_cols=175 Identities=17% Similarity=0.143 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWK 163 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 163 (765)
+...++..|..++..|+|.+|+..|++++...|.++ .+.+.+|.+++..|+++.|+..+++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 345678899999999999999999999999988765 7889999999999999999999999999888765 6778
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004249 164 LIFPWLIEQG-----------DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM 232 (765)
Q Consensus 164 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 232 (765)
.+|.+++... ...+|+..|+..+...|++..+- +|...+..+-. .-..--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHH
Confidence 8888765542 23467777777777777654221 00000000000 00111234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHH
Q 004249 233 GAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDR 281 (765)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~ 281 (765)
+|..|.+.|.+..|+..++.+++..|+... ..++..++..+..+|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 556666666666666666666666665543 1244556666666665553
No 130
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=6.1e-07 Score=93.44 Aligned_cols=369 Identities=17% Similarity=0.161 Sum_probs=200.3
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHH------------HHHHhcCCCCHHHHHHHHHHHH
Q 004249 137 ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCL------------SEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 137 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~~ 204 (765)
..|+.+.|.+.++-. ....+|-++|....+..+.+-|.-++ +++.+ +|+ +.-...+.+..
T Consensus 740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHH
Confidence 345556555544432 23445666666555555555444433 22222 222 22223445556
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK 284 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~ 284 (765)
.+|..++|...|++.-+ +-.+-.+|...|.+++|.++.+.--++.-.+ .|++.+..+...++.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~----Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRN----TYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehhh----hHHHHHHHHHhhccHHHHHH
Confidence 66666667666666543 2234455666666666666554322222111 35566666666666666666
Q ss_pred HHHHHHH----------HhcC------CCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHc
Q 004249 285 HIELVDL----------VYYS------GKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKN 348 (765)
Q Consensus 285 ~~~~~~~----------~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 348 (765)
+|+++-. .+++ ........+...|..+...|+.+.|+.+|..+ .-|+.+..+.+-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A---------~D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA---------KDYFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh---------hhhhhheeeEee
Confidence 6665311 0000 01122345666677777788888888888765 225566677777
Q ss_pred cccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHcC--
Q 004249 349 RELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL------EDNIDARLTLASLLLEDA-- 420 (765)
Q Consensus 349 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g-- 420 (765)
+|+.++|-.+-+ ...+-.+.+.+|+.|...|++.+|+..|.++.... .++ +..-.|+.+....|
T Consensus 951 qGk~~kAa~iA~-------esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 951 QGKTDKAARIAE-------ESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLALMSGGS 1022 (1416)
T ss_pred ccCchHHHHHHH-------hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHhhcCch
Confidence 888888876654 34455777888999999999999998888775431 111 11112222222222
Q ss_pred CHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhh-hccc-ccccChhhHHHHH
Q 004249 421 KDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCE-SSHQ-EETFNHEEHRLLI 498 (765)
Q Consensus 421 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~l-~~~~~~~~~~~~~ 498 (765)
+.-.|..+|+..-. -...-..+|.+.|.+.+|++.....-+- .+.| .+-+....++.++
T Consensus 1023 d~v~aArYyEe~g~-------------------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1023 DLVSAARYYEELGG-------------------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred hHHHHHHHHHHcch-------------------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 23334444443221 1122334566677777777654432110 0000 0011233467778
Q ss_pred HHHHHHHHhhhcHHHHHHHHH------HHHHhccC------------------CCCch---HHHHHHHHhhcccccCChh
Q 004249 499 IDLCKTLASLHRYEDAIKIIN------LILKLGYG------------------KFPVE---KEELYFLGAQIPCNTTDPK 551 (765)
Q Consensus 499 ~~l~~~~~~~~~~~~A~~~~~------~al~~~~~------------------~~~~~---~~~~~~~~~~~~~~~g~~~ 551 (765)
.+-+..+....+|++|..++- .|++++.. +.|+. ...+..++ .++.++|.|.
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva-e~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA-ELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH-HHHHhccchH
Confidence 888888888888888886653 34443321 11111 22344444 4889999999
Q ss_pred hHHHHHHHHHH
Q 004249 552 LWFDGVRFMVK 562 (765)
Q Consensus 552 ~A~~~~~~~l~ 562 (765)
.|-.-|.++-.
T Consensus 1163 ~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1163 AATKKFTQAGD 1173 (1416)
T ss_pred HHHHHHhhhhh
Confidence 88888877643
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.16 E-value=7.8e-09 Score=98.27 Aligned_cols=185 Identities=13% Similarity=0.022 Sum_probs=133.2
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHH
Q 004249 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL---WKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKF 197 (765)
Q Consensus 124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 197 (765)
++..++..|..++..|++++|+..|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45667778888888888888888888888888877644 3778888888888888888888888887765 35677
Q ss_pred HHHHHHHHhC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249 198 HLASLYVELG---------------N---FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT 259 (765)
Q Consensus 198 ~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 259 (765)
.+|.++...+ + ..+|+..|++.++..|++..+-...- -+..++..+..
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~-----------rl~~l~~~la~--- 176 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATK-----------RLVFLKDRLAK--- 176 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHH-----------HHHHHHHHHHH---
Confidence 7777654433 1 24567777777877777643211000 00111111110
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhc
Q 004249 260 EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIH 328 (765)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 328 (765)
--...|..|.+.|.|..|+.-++.+++.++. .+...++...++.++..+|..++|......+.
T Consensus 177 -----~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~-t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 -----YELSVAEYYTKRGAYVAVVNRVEQMLRDYPD-TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -----HHHHHHHHHHHcCchHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 2238899999999999999999999999664 56788999999999999999999998877653
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.15 E-value=1e-09 Score=111.40 Aligned_cols=113 Identities=18% Similarity=0.095 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249 128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG 207 (765)
Q Consensus 128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 207 (765)
+...|..++..|++++|+..|.++++++|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44567777777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249 208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKS 240 (765)
Q Consensus 208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 240 (765)
++++|+..|++++.++|++..+...++.+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888877776666654443
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.12 E-value=9.3e-06 Score=86.28 Aligned_cols=239 Identities=15% Similarity=0.091 Sum_probs=159.9
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004249 136 DALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV 215 (765)
Q Consensus 136 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 215 (765)
...+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 35678999999999999999999988888899999999999999888877777778888888899999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Q 004249 216 YRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYS 295 (765)
Q Consensus 216 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 295 (765)
|++++..+|+ ...+..+-.+|.+.+.|.+-.+.--+..+..|..+-. .|..+..+.......+....
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy-fWsV~Slilqs~~~~~~~~~----------- 166 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY-FWSVISLILQSIFSENELLD----------- 166 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch-HHHHHHHHHHhccCCccccc-----------
Confidence 9999999998 7778888888888888877666666666677777642 34444433333322222221
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC-CCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHH
Q 004249 296 GKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN-VSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCL 374 (765)
Q Consensus 296 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 374 (765)
.....+ |....++.+... .-....-....-.++...|.+++|...+..-+.....+.+...
T Consensus 167 ------~i~l~L------------A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l 228 (932)
T KOG2053|consen 167 ------PILLAL------------AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYL 228 (932)
T ss_pred ------chhHHH------------HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHH
Confidence 011111 222333333222 1111111111123445667788888877432222113444444
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHcCCC
Q 004249 375 HLKIAECSLALKEREKSIIYFYKALQILEDN 405 (765)
Q Consensus 375 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 405 (765)
-..-...+...+++.+-.+...+++..++++
T Consensus 229 ~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 229 ENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 4555677777788888888888888877776
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.4e-09 Score=99.94 Aligned_cols=123 Identities=17% Similarity=0.141 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 004249 141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG---NFQRAADVYR 217 (765)
Q Consensus 141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 217 (765)
.+.-+.-++.-+..+|++.+.|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++..+. ...++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4555666677777888888888888888888888888888888888888888888888888776543 3567888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH
Q 004249 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF 263 (765)
Q Consensus 218 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 263 (765)
+++..+|.++.+.+.+|..++..|++.+|+..++.+++..|.+...
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 8888888888888888888888888888888888888887777653
No 135
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.09 E-value=2.8e-05 Score=80.41 Aligned_cols=135 Identities=17% Similarity=0.206 Sum_probs=67.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249 132 GLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR 211 (765)
Q Consensus 132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 211 (765)
|.-+...|+++.|+..|-.+-. ...-.........+.+|+..++...... .....|-.++.-|...|+|+.
T Consensus 713 g~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHH
Confidence 4444455555555555543311 1111222333445555555554433221 112234456677777777777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 004249 212 AADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHI 286 (765)
Q Consensus 212 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 286 (765)
|.+.|.++- ........|-+.|+|++|.++-+++.. |.... ..|...+.-+-..|+|.+|.++|
T Consensus 784 ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~-~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 784 AEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATI-SLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHH-HHHHHhHHhHHhhcchhhhhhee
Confidence 777776652 122334566677777777776666532 33221 13444555555555555555443
No 136
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.8e-09 Score=96.57 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 004249 107 YEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG---DTTWAMSCLS 183 (765)
Q Consensus 107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 183 (765)
.+.-+.-++.-+..+|++++.|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3444444455555555555555555555555555555555555555555555555555555544332 2344555555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249 184 EAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 184 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 226 (765)
+++..+|.++.+.+.+|..+++.|+|.+|+..++.++...|.+
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 5555555555555555555555555555555555555555444
No 137
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=2.1e-05 Score=77.59 Aligned_cols=448 Identities=14% Similarity=0.058 Sum_probs=280.2
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhCCCc---hHHHHHHHHH-HHcCCHHHHHHHHHHHhccC---CCC-
Q 004249 89 PEIRRMLGDASLHYALG--RYEEAISVLHEVIRLEEELP---NSYHILGLVH-DALGNTAKAMGCYWLAACYK---QKD- 158 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~---p~~- 158 (765)
.-...+++.|..+...| +...++.+++..+...|.+. ..+..+|.++ ....+++.|...++++..+. |..
T Consensus 5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy 84 (629)
T KOG2300|consen 5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY 84 (629)
T ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH
Confidence 34557789999888899 89999999999988877653 5667777754 46789999999999997654 332
Q ss_pred ---HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---
Q 004249 159 ---SSLWKLIFPWLIEQG-DTTWAMSCLSEAVKADPNDF----KLKFHLASLYVELGNFQRAADVYRQMVQLCPENI--- 227 (765)
Q Consensus 159 ---~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 227 (765)
..+...|+.+|.... .+..|...+.+++++....+ ...+.++.+..-..++..|++.+.-.......-.
T Consensus 85 dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~y 164 (629)
T KOG2300|consen 85 DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPY 164 (629)
T ss_pred hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHH
Confidence 255667899988877 78899999999999866554 4568899999999999999998544332211111
Q ss_pred -HHHHH--HHHHHHHcCCH---HHHHHHHHHHHhcCCCCCC----HHHH-HHH-HHHHHHhccHHHHHHHHHHHHHHhc-
Q 004249 228 -EALKM--GAKLYQKSGQI---ESSVDILEDYLKGHPTEAD----FGVI-DLL-ASMLVQMNAYDRVLKHIELVDLVYY- 294 (765)
Q Consensus 228 -~~~~~--la~~~~~~g~~---~~A~~~~~~~~~~~p~~~~----~~~~-~~l-~~~~~~~~~~~~A~~~~~~~~~~~~- 294 (765)
.+.+. .+.++....+. ..+.....++.+....++. ..++ ..+ ...|...|+...+...+++......
T Consensus 165 lr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqt 244 (629)
T KOG2300|consen 165 LRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQT 244 (629)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhc
Confidence 12222 23333333333 3444444445544333322 1111 122 2234455777766666665543321
Q ss_pred --C------------CCCccH--------HHHHHHHH--HHHhcCChhHHHHHHHhhcccC---C--CChH--------H
Q 004249 295 --S------------GKELLL--------ALKIKAGI--CHIQLGNTDKAEILLTAIHWEN---V--SDHA--------E 337 (765)
Q Consensus 295 --~------------~~~~~~--------~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~---~--~~~~--------~ 337 (765)
. +.+... .+...+.. --...|-+++|.++-++++... + +... .
T Consensus 245 ist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~ 324 (629)
T KOG2300|consen 245 ISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMI 324 (629)
T ss_pred cCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 1 000000 01111111 1123456677777666655221 0 1111 2
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhccC-CCC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC-CH--
Q 004249 338 SINEIADLFKNRELYSTALKYYHMLEANAG-VHN-------DGCLHLKIAECSLALKEREKSIIYFYKALQILED-NI-- 406 (765)
Q Consensus 338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~-- 406 (765)
.+..++.+-.-.|++.+|++....+.+... .|. .+.+++.+|......+.++.|...|..+.+.-.. +.
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 334455666778999999998877765421 233 3467778888888889999999999999987432 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccc
Q 004249 407 DARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQE 486 (765)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~ 486 (765)
-+...+|.+|.+.|+-+.-.+.++..-..+..+ .........+++..|...+.++++.+|...+.+.++..
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s-----~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma---- 475 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKALDLIGPLNTNS-----LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA---- 475 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCc-----chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc----
Confidence 234558999999998777666665443322111 11223345778888999999999999999888887633
Q ss_pred cccChhh----HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHH--HHhhcccccCC
Q 004249 487 ETFNHEE----HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYF--LGAQIPCNTTD 549 (765)
Q Consensus 487 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~~~~~g~ 549 (765)
...+ ..-.+.-++.+....|+..++.+..+-++.+..+. |+.+..++. +..+++...|+
T Consensus 476 ---naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi-~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 476 ---NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI-PDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred ---chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC-CCchHHHHHHHHHHHHHHHhCc
Confidence 1111 12344567777888999999999999998887542 444444443 22334444554
No 138
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.06 E-value=6.3e-08 Score=90.05 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHH
Q 004249 193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN---IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDL 268 (765)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~ 268 (765)
+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.++..|+++. ..+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4556666666666666666666666666666654 455666666666666666666666666666666654 234455
Q ss_pred HHHHHHHh-----------ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH
Q 004249 269 LASMLVQM-----------NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE 337 (765)
Q Consensus 269 l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 337 (765)
+|.+++.. +...+|+..|+..+..+|. ++....+...+.. +. ..-..
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~-S~y~~~A~~~l~~-----------------l~----~~la~ 142 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN-SEYAEEAKKRLAE-----------------LR----NRLAE 142 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT-STTHHHHHHHHHH-----------------HH----HHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC-chHHHHHHHHHHH-----------------HH----HHHHH
Confidence 55554443 3345777777777777442 1222222222211 11 11123
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCH---HHHHHHHHHHHHhccHHHH
Q 004249 338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDG---CLHLKIAECSLALKEREKS 391 (765)
Q Consensus 338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A 391 (765)
--+.+|..|.+.|.+..|+..++.+++. .|+.+ +++..++.+|..+|..+.|
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3445677777777777777777777776 56553 4667777777777776644
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.06 E-value=1e-08 Score=89.85 Aligned_cols=129 Identities=13% Similarity=0.105 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKL 164 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~ 164 (765)
....+..+...+..++...+...++.++...|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+.+.
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3445566666667888888888888888888877 3667778888888888888888888888766554 346677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249 165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220 (765)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 220 (765)
++.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888888888888888865 33344456677788888888888888888887763
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.04 E-value=5.6e-09 Score=88.63 Aligned_cols=96 Identities=24% Similarity=0.221 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHH
Q 004249 96 GDASLHYALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWL 169 (765)
Q Consensus 96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~ 169 (765)
..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 33344444444444444444444433332 2233334444444444444444444444333332 23333344444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC
Q 004249 170 IEQGDTTWAMSCLSEAVKADPN 191 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~ 191 (765)
...|++++|+..+++++...|+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcC
Confidence 4444444444444444444333
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.03 E-value=4.6e-09 Score=89.20 Aligned_cols=107 Identities=19% Similarity=0.136 Sum_probs=98.3
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFH 198 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 198 (765)
++.++.+|..+...|++++|+..|.+++...|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999988876 5788999999999999999999999999988875 678999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249 199 LASLYVELGNFQRAADVYRQMVQLCPENIEALK 231 (765)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 231 (765)
+|.++...|++++|+..+.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999876544
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.03 E-value=1.3e-08 Score=107.41 Aligned_cols=145 Identities=12% Similarity=-0.082 Sum_probs=112.4
Q ss_pred HHhhCCCchHH--HHHHHHHHHcCC---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 004249 118 IRLEEELPNSY--HILGLVHDALGN---TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG--------DTTWAMSCLSE 184 (765)
Q Consensus 118 l~~~p~~~~~~--~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~ 184 (765)
....|.++.+| +..|..+...++ ...|+.+|+++++++|++..++..++.++.... +...+.....+
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556666544 455666655544 678888888888888888888887777665432 23456666666
Q ss_pred HHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 185 AVKA--DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 185 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
++.. +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 6654 677788888888888889999999999999999998 5788999999999999999999999999999999886
Q ss_pred H
Q 004249 263 F 263 (765)
Q Consensus 263 ~ 263 (765)
+
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 4
No 143
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.02 E-value=1.3e-07 Score=89.16 Aligned_cols=308 Identities=14% Similarity=0.094 Sum_probs=169.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 94 MLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
.+..|..++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.|++++.+--..+...
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a--------------- 73 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTA--------------- 73 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH---------------
Confidence 34556666666677777766666665432222 222233344455555555544433222211
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCH
Q 004249 171 EQGDTTWAMSCLSEAVKADPN--DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-----IEALKMGAKLYQKSGQI 243 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~ 243 (765)
.+.... ..+++.+++..+....++.+++.+-...+.+-... ..+...++..+..++.+
T Consensus 74 ---------------~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~f 138 (518)
T KOG1941|consen 74 ---------------RELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVF 138 (518)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHH
Confidence 111000 12344455555555555555555544444432111 13344456666666666
Q ss_pred HHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc------cHHHHHHHHHHHHh
Q 004249 244 ESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKEL------LLALKIKAGICHIQ 313 (765)
Q Consensus 244 ~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 313 (765)
+++++.|+.+++....+.+ ..++..+|.++.+..++++|+-+..++..+...-.-. ...+.+.++..+..
T Consensus 139 q~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~ 218 (518)
T KOG1941|consen 139 QKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL 218 (518)
T ss_pred HHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH
Confidence 6666666666654333222 3345566677777777777776666666553211111 12234556666777
Q ss_pred cCChhHHHHHHHhhcc-----cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHH
Q 004249 314 LGNTDKAEILLTAIHW-----ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVH----NDGCLHLKIAECSLA 384 (765)
Q Consensus 314 ~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~la~~~~~ 384 (765)
+|..-.|.++.+++.+ .+.+........+|++|...|+.+.|..-|+.+......- ....++...+.++..
T Consensus 219 ~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~ 298 (518)
T KOG1941|consen 219 LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET 298 (518)
T ss_pred hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 7777777777666432 2234445667778888888888888888888876552111 223556666777666
Q ss_pred hccHHH-----HHHHHHHHHHHcCCC------HHHHHHHHHHHHHcCCHHHHHHhcCC
Q 004249 385 LKEREK-----SIIYFYKALQILEDN------IDARLTLASLLLEDAKDEEAISLLTP 431 (765)
Q Consensus 385 ~g~~~~-----A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (765)
..-..+ |++.-++++++...- ...+..++.+|...|.-++-...+..
T Consensus 299 ~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 299 LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 555444 777777777764321 24667788999888877765555443
No 144
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.02 E-value=1.2e-07 Score=89.30 Aligned_cols=243 Identities=15% Similarity=0.109 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD-----SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN--D----FK 194 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~ 194 (765)
+++..++..+...-++.+++.+-.-.+.+-... ..+...++.++..++.++++++.|++++....+ + ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 455556666666666666666555555442111 134444566666666666666666666554221 1 13
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC--
Q 004249 195 LKFHLASLYVELGNFQRAADVYRQMVQLCPEN----------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-- 262 (765)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-- 262 (765)
++..+|..+....++++|+.+..++.++.... .-+++.++..+...|..-.|.++.+++.++.-...+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 45556666666666666666655555543211 123445555555555555555555555443211111
Q ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHH
Q 004249 263 --FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESIN 340 (765)
Q Consensus 263 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 340 (765)
.+.+..+|.+|...|+.+.|..-|+++..... .+--.+|. ..++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~-------~~gdrmgq--------------------------v~al~ 290 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA-------SLGDRMGQ--------------------------VEALD 290 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh-------hhhhhHHH--------------------------HHHHH
Confidence 22233455555555555555555555544310 00011111 22333
Q ss_pred HHHHHHHccccH-----HHHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 341 EIADLFKNRELY-----STALKYYHMLEANAG----VHNDGCLHLKIAECSLALKEREKSIIYFYKALQI 401 (765)
Q Consensus 341 ~la~~~~~~g~~-----~~A~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 401 (765)
..+.++....-. =.|++.-++++++.. ...-...+..++.+|...|.-++-...+.++-+.
T Consensus 291 g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 291 GAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 333333222211 236666666555421 1112356788899998888877777766665443
No 145
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.99 E-value=1.7e-07 Score=103.19 Aligned_cols=240 Identities=11% Similarity=0.082 Sum_probs=192.2
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHhCCHHHHH
Q 004249 139 GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA-DPND----FKLKFHLASLYVELGNFQRAA 213 (765)
Q Consensus 139 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~ 213 (765)
++-.+..+.|++.+..+|+....|........+.++.+.|.+.+++|+.. ++.. ...|..+-++...-|.-+.-.
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 33445667788888889999999999888889999999999999999875 3322 345666666666667777888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 004249 214 DVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVY 293 (765)
Q Consensus 214 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 293 (765)
+.|++|.+.+ +.-.++..|..+|...+++++|.++++.+++...+... +|..++..++++++-+.|...+.++++..
T Consensus 1518 kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~--vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1518 KVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK--VWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh--HHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 8999988764 33467888999999999999999999999998875544 78899999999999999999999999985
Q ss_pred cCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH
Q 004249 294 YSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC 373 (765)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 373 (765)
|. ..........+...++.|+.+.+..+|+..+..+ |...+.|..+.+.-.+.|+.+.+..+|++++.+...|....
T Consensus 1595 Pk--~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1595 PK--QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred ch--hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 53 3466777788888999999999999999998877 77889999999999999999999999999998865566655
Q ss_pred HHHHHHHHHHH
Q 004249 374 LHLKIAECSLA 384 (765)
Q Consensus 374 ~~~~la~~~~~ 384 (765)
.++..=.-|.+
T Consensus 1672 fffKkwLeyEk 1682 (1710)
T KOG1070|consen 1672 FFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHHHH
Confidence 55544333333
No 146
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=3.1e-08 Score=86.41 Aligned_cols=127 Identities=15% Similarity=0.094 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (765)
+..++..|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++++|...-++.+.|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 35667778888888989999999999999999999999999999999999999999999999999998888999999888
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED 252 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (765)
--|++.-|.+.+.+-.+.+|++|---..+ .+-...-++.+|...+.+
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWL-Yl~E~k~dP~~A~tnL~q 191 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWL-YLNEQKLDPKQAKTNLKQ 191 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHH-HHHHhhCCHHHHHHHHHH
Confidence 89999999999988888888887422211 112234456666655443
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=98.97 E-value=5.9e-08 Score=96.58 Aligned_cols=120 Identities=12% Similarity=0.017 Sum_probs=63.5
Q ss_pred HHHHHHHHHh---ccCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHH
Q 004249 143 KAMGCYWLAA---CYKQKDSSLWKLIFPWLIEQ---------GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQ 210 (765)
Q Consensus 143 ~A~~~~~~a~---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 210 (765)
.|+.+|.+++ .++|....++..++.++... ....+|....+++++++|.|+.++..+|.+....++++
T Consensus 276 ~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~ 355 (458)
T PRK11906 276 RAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAK 355 (458)
T ss_pred HHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchh
Confidence 3444455555 44444444444444444332 12334555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 211 RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 211 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
.|...|++++.++|+.+.+++..|.+....|+.++|+..++++++++|....
T Consensus 356 ~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 356 VSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 5555555555555555555555555555555555555555555555555444
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.97 E-value=1.4e-08 Score=91.69 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=76.9
Q ss_pred HcCCHHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHH
Q 004249 103 ALGRYEEAISVLHEVIRLEEEL--PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTW 177 (765)
Q Consensus 103 ~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~ 177 (765)
-.+.|..+...+..+++..+.. ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e 90 (168)
T CHL00033 11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK 90 (168)
T ss_pred cccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence 3444556666665555544443 4667888888888888888888888888776542 3577888888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249 178 AMSCLSEAVKADPNDFKLKFHLASLYVELG 207 (765)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g 207 (765)
|+..+++++.+.|.....+..+|.++...|
T Consensus 91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 91 ALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 888888888888888888888887777433
No 149
>PRK11906 transcriptional regulator; Provisional
Probab=98.96 E-value=4.5e-08 Score=97.38 Aligned_cols=159 Identities=11% Similarity=-0.065 Sum_probs=103.6
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhCCCCH
Q 004249 163 KLIFPWLIEQGD---TTWAMSCLSEAV---KADPNDFKLKFHLASLYVEL---------GNFQRAADVYRQMVQLCPENI 227 (765)
Q Consensus 163 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 227 (765)
+..|......+. ...|+.+|.+++ .++|....++..++.++... ....+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 334444433332 345677777777 66777777777777766543 234566777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 004249 228 EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA 307 (765)
Q Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 307 (765)
.++..+|.+....++++.|+..|++++.++|+... +++..|.+..-.|+.++|++.+++++++ +|....+-...
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~--~~~~~~~~~~~~G~~~~a~~~i~~alrL----sP~~~~~~~~~ 412 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIAS--LYYYRALVHFHNEKIEEARICIDKSLQL----EPRRRKAVVIK 412 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHH--HHHHHHHHHHHcCCHHHHHHHHHHHhcc----CchhhHHHHHH
Confidence 77777777777777777777777777777777766 6667777777777777777777777777 55555443333
Q ss_pred HHH-HHhcCChhHHHHHHHhh
Q 004249 308 GIC-HIQLGNTDKAEILLTAI 327 (765)
Q Consensus 308 ~~~-~~~~~~~~~A~~~~~~~ 327 (765)
-.+ .+-..-.+.|+.+|-+-
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 413 ECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHcCCchhhhHHHHhhc
Confidence 333 44445566666666554
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.96 E-value=3.6e-08 Score=89.38 Aligned_cols=93 Identities=18% Similarity=0.141 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 201 (765)
..+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3445555555555555555555555555544332 2455555666666666666666666666655555555555566
Q ss_pred HHHHhCCHHHHHHHHH
Q 004249 202 LYVELGNFQRAADVYR 217 (765)
Q Consensus 202 ~~~~~g~~~~A~~~~~ 217 (765)
++...|+...+...+.
T Consensus 115 ~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 115 IYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHcCChHhHhhCHH
Confidence 6555555444443333
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.94 E-value=1.1e-08 Score=83.01 Aligned_cols=94 Identities=21% Similarity=0.322 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 004249 129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN 208 (765)
Q Consensus 129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 208 (765)
+.+|.++...|++++|+..+.++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHh
Q 004249 209 FQRAADVYRQMVQL 222 (765)
Q Consensus 209 ~~~A~~~~~~al~~ 222 (765)
++.|...+.++++.
T Consensus 84 ~~~a~~~~~~~~~~ 97 (100)
T cd00189 84 YEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHcc
Confidence 44444444444433
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.94 E-value=2.8e-09 Score=83.20 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249 104 LGRYEEAISVLHEVIRLEEE--LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSC 181 (765)
Q Consensus 104 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 181 (765)
.|+|+.|+..+++++...|. +...++.+|.|++..|++++|+..+++ ...+|.+....+.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888888887774 345666678888888888888888877 666677777777778888888888888887
Q ss_pred HHHH
Q 004249 182 LSEA 185 (765)
Q Consensus 182 ~~~a 185 (765)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
No 153
>PRK15331 chaperone protein SicA; Provisional
Probab=98.94 E-value=4.6e-08 Score=83.19 Aligned_cols=105 Identities=16% Similarity=0.060 Sum_probs=94.8
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
+......+..|..++..|++++|..+|+-....+|.+++.|..||.|+..+++|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADPNDF 193 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~ 193 (765)
|++.+|+...|..+|+.++. .|.+.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 99999999999999999988 45543
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.93 E-value=1.8e-08 Score=91.28 Aligned_cols=119 Identities=25% Similarity=0.305 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL 164 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 164 (765)
+.....++..|..+...|++++|+..|++++...|+. ..++..+|.++...|++++|+..+.+++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3344556677777777777888777777777766543 3567777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249 165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 226 (765)
+|.++...|+...+...+..++. .+++|+.++++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 77777777777776665555432 2566777777777777665
No 155
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=9.8e-07 Score=86.66 Aligned_cols=147 Identities=10% Similarity=0.048 Sum_probs=111.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC------CCCHHHHHHHHHH
Q 004249 200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY-LKGHPT------EADFGVIDLLASM 272 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~p~------~~~~~~~~~l~~~ 272 (765)
...+.+..+...+..-.+.+.....+.+.++...+..++..|++.+|.+.+... +...|. -.....|+++|.+
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 344455556666666666666666677888888999999999999999887653 222222 2223356899999
Q ss_pred HHHhccHHHHHHHHHHHHHHhc----C----------CCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHH
Q 004249 273 LVQMNAYDRVLKHIELVDLVYY----S----------GKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAES 338 (765)
Q Consensus 273 ~~~~~~~~~A~~~~~~~~~~~~----~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 338 (765)
+++.|.|.-+..+|.++++... . .......+.++.|..++..|++-.|.++|.+++... ..+|.+
T Consensus 293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrl 371 (696)
T KOG2471|consen 293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRL 371 (696)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHH
Confidence 9999999999999999986211 1 123456788999999999999999999999998777 778999
Q ss_pred HHHHHHHHH
Q 004249 339 INEIADLFK 347 (765)
Q Consensus 339 ~~~la~~~~ 347 (765)
|..++.+.+
T Consensus 372 WLRlAEcCi 380 (696)
T KOG2471|consen 372 WLRLAECCI 380 (696)
T ss_pred HHHHHHHHH
Confidence 999998875
No 156
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=2.2e-07 Score=102.23 Aligned_cols=222 Identities=13% Similarity=0.050 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC--CCHHHHHHHHHHHHHhccHHHHHHHH
Q 004249 210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG-HPTE--ADFGVIDLLASMLVQMNAYDRVLKHI 286 (765)
Q Consensus 210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 286 (765)
.+..+.|++.+..+|+..-.|..........++.++|.+..++++.. ++.. ....+|..+-++...-|.-+...+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34567788888899999999998888889999999999999999864 3322 22446666666666778778888899
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Q 004249 287 ELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA 366 (765)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 366 (765)
+++.+. -.+..++..|..+|...+++++|.++++.+++.. .....+|..++..++.+++-+.|..++.+++..
T Consensus 1521 eRAcqy-----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~- 1593 (1710)
T KOG1070|consen 1521 ERACQY-----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS- 1593 (1710)
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-
Confidence 999887 4566778888999999999999999999998887 467889999999999999999999999999988
Q ss_pred CCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249 367 GVHN--DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY 439 (765)
Q Consensus 367 ~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (765)
-|. +.+.....|.+-++.|+.+.+...|+..+..+|...+.|..+.+.-.+.|+.+-+..+|++++...-..
T Consensus 1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 565 778888899999999999999999999999999999999999999999999999999999988765443
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.93 E-value=3.4e-09 Score=79.33 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Q 004249 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG-DTTWAMSCLSEAVKAD 189 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 189 (765)
+|..+|.+++..|++++|+..|.++++.+|+++.+++.+|.++..+| ++.+|+..++++++++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444444444444444444444444 3444444444444433
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.92 E-value=2.5e-08 Score=90.16 Aligned_cols=122 Identities=12% Similarity=0.075 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHH
Q 004249 139 GNTAKAMGCYWLAACYKQKD--SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFHLASLYVELGNFQRAA 213 (765)
Q Consensus 139 g~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 213 (765)
+.+..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34555666665555555444 4677889999999999999999999999886653 458999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhcCCCC
Q 004249 214 DVYRQMVQLCPENIEALKMGAKLYQ-------KSGQIE-------SSVDILEDYLKGHPTE 260 (765)
Q Consensus 214 ~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~~~~~~p~~ 260 (765)
..+++++.+.|.....+..+|.++. ..|+++ +|+.++++++..+|.+
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999999888888888888 666655 4444445555556654
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.91 E-value=6.9e-08 Score=84.56 Aligned_cols=116 Identities=18% Similarity=0.152 Sum_probs=67.8
Q ss_pred HcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHH
Q 004249 137 ALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFHLASLYVELGNFQ 210 (765)
Q Consensus 137 ~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 210 (765)
..++...+...++..+...|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3556666666666666666655 2445556666666666666666666666654433 234556666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 211 RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY 253 (765)
Q Consensus 211 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 253 (765)
+|+..++.. ...+..+.++..+|.++...|++++|+..|+++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666442 222333455556666666666666666666654
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.91 E-value=2.1e-08 Score=81.44 Aligned_cols=98 Identities=24% Similarity=0.368 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS 240 (765)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 240 (765)
+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777778888888888888888777777777778888888888888888888888887777777777788888888
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 004249 241 GQIESSVDILEDYLKGHP 258 (765)
Q Consensus 241 g~~~~A~~~~~~~~~~~p 258 (765)
|++++|...+.+++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 888888888877777665
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.91 E-value=8.4e-08 Score=101.37 Aligned_cols=137 Identities=11% Similarity=-0.002 Sum_probs=93.9
Q ss_pred ccCCCCHHHHHH--HHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHHH
Q 004249 153 CYKQKDSSLWKL--IFPWLIEQGD---TTWAMSCLSEAVKADPNDFKLKFHLASLYVELG--------NFQRAADVYRQM 219 (765)
Q Consensus 153 ~~~p~~~~~~~~--la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~a 219 (765)
...|.+..+|-. .|..+...++ ...|+.+|+++++.+|++..++..++.++.... +...+.....++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 444566655533 4544544443 667888888888888888777777777665431 234555555665
Q ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 220 VQL--CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 220 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
+.. .|.++.++..+|..+...|++++|...+++++.++|+ +.+|..+|.++...|++++|++.|++++.+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 553 5666677777777777778888888888888888773 236778888888888888888888888777
No 162
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.7e-07 Score=81.64 Aligned_cols=158 Identities=19% Similarity=0.159 Sum_probs=93.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHH
Q 004249 268 LLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFK 347 (765)
Q Consensus 268 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 347 (765)
.-+.+++..|++++|+....... ..++...-..++.++.+.+-|...++++...+ +..++..||..+.
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~---------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv 180 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE---------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWV 180 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHH
Confidence 34445555556666655554422 12233333344555555555655555554322 2223333443332
Q ss_pred ----ccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHH
Q 004249 348 ----NRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDE 423 (765)
Q Consensus 348 ----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 423 (765)
..+.+.+|.-+|+.+-.. .|..+......+.|+..+|++++|...++.++..++++++++.++..+-...|...
T Consensus 181 ~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 234567777777777665 56667777777778888888888888888888877888887777777777777665
Q ss_pred HHHH-hcCCCCCccccc
Q 004249 424 EAIS-LLTPPMSLENKY 439 (765)
Q Consensus 424 ~A~~-~~~~~~~~~~~~ 439 (765)
++.. .+.+....+|..
T Consensus 259 ~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 259 EVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 5443 344444444443
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.91 E-value=1.1e-07 Score=93.73 Aligned_cols=20 Identities=20% Similarity=0.028 Sum_probs=8.0
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 004249 132 GLVHDALGNTAKAMGCYWLA 151 (765)
Q Consensus 132 ~~~~~~~g~~~~A~~~~~~a 151 (765)
|.+|...|++++|..+|.++
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 33344444444444444443
No 164
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.91 E-value=6.5e-09 Score=77.78 Aligned_cols=66 Identities=24% Similarity=0.506 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q 004249 159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG-NFQRAADVYRQMVQLCP 224 (765)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 224 (765)
+..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4445555555555555555555555555555555555555555555555 45555555555555544
No 165
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=1.8e-07 Score=81.72 Aligned_cols=197 Identities=13% Similarity=0.057 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
.+..++.+|..|-..|-+.-|.--|.+++.+.|+.++++..+|..+...|+++.|.+.|...++++|...-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR-QMVQLCPENIEALKMGAKLYQKSGQIESSVD 248 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 248 (765)
+--|++.-|.+-+.+--+.+|++|---..+-.. ...-+..+|...+. ++...+ +....|.... +..|+..+ ..
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d-~e~WG~~iV~---~yLgkiS~-e~ 217 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSD-KEQWGWNIVE---FYLGKISE-ET 217 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhcc-HhhhhHHHHH---HHHhhccH-HH
Confidence 999999999999999999999987432222111 23345667765554 444333 2222222221 22233221 22
Q ss_pred HHHHHHhcCCCCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 249 ILEDYLKGHPTEAD-----FGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 249 ~~~~~~~~~p~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
.++++.....++.. ...++.+|..+...|+.++|...|+-++..
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34444333333221 235667888888888888888888777655
No 166
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.89 E-value=5.8e-05 Score=75.79 Aligned_cols=422 Identities=10% Similarity=0.003 Sum_probs=205.4
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 004249 115 HEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFK 194 (765)
Q Consensus 115 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 194 (765)
++-++.+|.+.++|+.|..-+..+ -+++....|++.+...|..+.+|.......+...+|+.....|.+++..-- +.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence 455677788888887777766655 777888888888877788888887777777777788877777777775322 233
Q ss_pred HHHH-HHHHHHHhCCHHHHH----HHHHHHHH---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcC
Q 004249 195 LKFH-LASLYVELGNFQRAA----DVYRQMVQ---LCPENIEALKMGAKLYQ---------KSGQIESSVDILEDYLKGH 257 (765)
Q Consensus 195 ~~~~-la~~~~~~g~~~~A~----~~~~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~~~~~ 257 (765)
.|.. +..+-...|+...+. ..|+-++. .++....+|...+..+. ...+.+.-...|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 3332 222222333333322 22333322 23444444544443322 3335555666677776532
Q ss_pred CCCCCHHHHHHH-----------HH--HHHHhccHHHHHHHHHHHHHHhc---CCCCc-----------cHHHHHHHHHH
Q 004249 258 PTEADFGVIDLL-----------AS--MLVQMNAYDRVLKHIELVDLVYY---SGKEL-----------LLALKIKAGIC 310 (765)
Q Consensus 258 p~~~~~~~~~~l-----------~~--~~~~~~~~~~A~~~~~~~~~~~~---~~~~~-----------~~~~~~~l~~~ 310 (765)
-.+.. ..|... |. +-.....|..|...+++...... ...+. ..+.|.++..
T Consensus 168 m~nlE-kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~- 245 (656)
T KOG1914|consen 168 MHNLE-KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK- 245 (656)
T ss_pred cccHH-HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-
Confidence 22211 111111 11 11222345555555555443311 00000 0111222211
Q ss_pred HHhcCChh---------HHHHHHHhhcccCCCChHHHHHHHHHHHHcccc--------------HHHHHHHHHHHHhccC
Q 004249 311 HIQLGNTD---------KAEILLTAIHWENVSDHAESINEIADLFKNREL--------------YSTALKYYHMLEANAG 367 (765)
Q Consensus 311 ~~~~~~~~---------~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~ 367 (765)
+.+.+-.. .-.-.+++++.-. +-.+++|+..+..+...++ .+++..+|++++...
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l-~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l- 323 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYL-GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL- 323 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH-
Confidence 11111100 0111222322222 3445555555544444444 556666666665442
Q ss_pred CCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcc
Q 004249 368 VHNDGCLHLKIAECSLALKE---REKSIIYFYKALQILEDNI-DARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSD 443 (765)
Q Consensus 368 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 443 (765)
...+...++.++..-...-+ .+.-...+.+++.....++ -++..+...-.+..-...|..+|.++.+.....
T Consensus 324 ~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~---- 399 (656)
T KOG1914|consen 324 LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR---- 399 (656)
T ss_pred HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc----
Confidence 22233344444433332222 4455555666655533332 234444444444445666666776666532221
Q ss_pred cchhhhhhhHHHHHHHHH-HHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 004249 444 KTHAWWLNIRIKIKLCRI-YKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLIL 522 (765)
Q Consensus 444 ~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 522 (765)
..++..-|.+ |...++..-|..+|.--++ ..++++...+.....+...++-..|..+|++++
T Consensus 400 --------hhVfVa~A~mEy~cskD~~~AfrIFeLGLk---------kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l 462 (656)
T KOG1914|consen 400 --------HHVFVAAALMEYYCSKDKETAFRIFELGLK---------KFGDSPEYVLKYLDFLSHLNDDNNARALFERVL 462 (656)
T ss_pred --------chhhHHHHHHHHHhcCChhHHHHHHHHHHH---------hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 1222222221 3345566666666666554 445566666666666666777777777777776
Q ss_pred HhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCC
Q 004249 523 KLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHP 565 (765)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 565 (765)
... ..++....++......-..-|+....+..-++-...+|
T Consensus 463 ~s~--l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 463 TSV--LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hcc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 641 11223333344333355556666666666655555555
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.89 E-value=4e-09 Score=77.73 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=30.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 004249 97 DASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD 158 (765)
Q Consensus 97 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 158 (765)
+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34444555555555555555555555555555555555555555555555555555444443
No 168
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=8.5e-05 Score=76.97 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=37.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYW 149 (765)
Q Consensus 101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 149 (765)
.+..|+|+.|...++. +...|+....|..++......|+.--|..+|.
T Consensus 454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfa 501 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFA 501 (1636)
T ss_pred ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4678999999887764 56677777788888888888888777777765
No 169
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.7e-08 Score=93.24 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK 239 (765)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 239 (765)
.++.+++.|+.++++|.+|+....+++..+|+|..+++..|.++...|+++.|+..|++++++.|.|-.+...+..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667777788888888888888888888888888888888888888888888888888888888877777777776666
Q ss_pred cCCHHHH-HHHHHHHHhcCC
Q 004249 240 SGQIESS-VDILEDYLKGHP 258 (765)
Q Consensus 240 ~g~~~~A-~~~~~~~~~~~p 258 (765)
...+.+. .+.|.+++..-+
T Consensus 338 ~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 5555443 667777766543
No 170
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.87 E-value=1e-06 Score=80.69 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWK 163 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 163 (765)
.+..++.+|...++.|+|++|+..|+.+....|.++ .+...++.++++.+++++|+..+++-+.+.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 356788999999999999999999999999988765 7889999999999999999999999999988766 4566
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHhCCHHHHHHHHHH
Q 004249 164 LIFPWLIEQ--------GDTTWAMSCLSEAVKADPNDFKL-----------------KFHLASLYVELGNFQRAADVYRQ 218 (765)
Q Consensus 164 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~ 218 (765)
..|.+++.. .-..+|+..|+..+...|++.-+ -..+|..|.+.|.+-.|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 677775542 12456778888888888876421 12344555555555555555555
Q ss_pred HHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 004249 219 MVQLCPEN---IEALKMGAKLYQKSGQIESSVDIL 250 (765)
Q Consensus 219 al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 250 (765)
+++..|+. .+++..+..+|..+|-.++|...-
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 55554433 234445555555555555554433
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.87 E-value=6.2e-08 Score=95.47 Aligned_cols=211 Identities=17% Similarity=0.208 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHhCCHHHHH
Q 004249 140 NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP--ND----FKLKFHLASLYVELGNFQRAA 213 (765)
Q Consensus 140 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~ 213 (765)
++++|...|.++ |.+|...|++++|..+|.++....- ++ ...+...+.++... ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 566666666654 6778888999999999988876521 11 24455666666555 899999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHH
Q 004249 214 DVYRQMVQLCPEN------IEALKMGAKLYQKS-GQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 214 ~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A 282 (765)
.+|++++.+.-.. ...+..+|.+|... |++++|+++|+++++....... ...+..++.++...|+|++|
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 9999988753211 45677888888887 8888888888888776433222 22455778888888888888
Q ss_pred HHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC----CChHHHHHHHHHHHH--ccccHH
Q 004249 283 LKHIELVDLVYYSGKEL---LLALKIKAGICHIQLGNTDKAEILLTAIHWENV----SDHAESINEIADLFK--NRELYS 353 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~la~~~~--~~g~~~ 353 (765)
+..|+++........-. ....++..+.|++..||+..|...+++.....+ +........+...+- ....++
T Consensus 175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~ 254 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFT 254 (282)
T ss_dssp HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHH
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 88888877652111111 112345667777778888888777777654431 112234444444442 344566
Q ss_pred HHHHHHHHHHhc
Q 004249 354 TALKYYHMLEAN 365 (765)
Q Consensus 354 ~A~~~~~~~~~~ 365 (765)
+|+.-|+.+..+
T Consensus 255 ~av~~~d~~~~l 266 (282)
T PF14938_consen 255 EAVAEYDSISRL 266 (282)
T ss_dssp HHCHHHTTSS--
T ss_pred HHHHHHcccCcc
Confidence 666666655444
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=98.86 E-value=3.6e-08 Score=83.81 Aligned_cols=108 Identities=9% Similarity=0.048 Sum_probs=92.9
Q ss_pred hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249 120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL 199 (765)
Q Consensus 120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 199 (765)
+.++.-+..+..|.-++..|++++|...|+-+.-.+|.++..|..||.++..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34444577888888889999999999999998888999999999999999999999999999999999989999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 004249 200 ASLYVELGNFQRAADVYRQMVQLCPENIE 228 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 228 (765)
|.|+...|+...|..+|..++. .|.+..
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 9999999999999999999887 455433
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.86 E-value=6.1e-08 Score=92.65 Aligned_cols=105 Identities=16% Similarity=0.119 Sum_probs=83.9
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CHHHHH
Q 004249 91 IRRMLGDASLH-YALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQK---DSSLWK 163 (765)
Q Consensus 91 ~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~ 163 (765)
....+..|..+ +..|+|++|+..|+.+++..|++ +.+++.+|.+|+..|++++|+..|.+++...|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45566666665 55788888888888888888887 478888888888888888888888888877665 457788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 004249 164 LIFPWLIEQGDTTWAMSCLSEAVKADPNDFKL 195 (765)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 195 (765)
.+|.++...|++++|...|+++++..|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 88888888888888888888888888877644
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.85 E-value=1.3e-08 Score=75.06 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=33.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249 131 LGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND 192 (765)
Q Consensus 131 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 192 (765)
+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45555555555555555555555555555555555555555555555555555555555544
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.84 E-value=7.4e-09 Score=80.84 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004249 139 GNTAKAMGCYWLAACYKQK--DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY 216 (765)
Q Consensus 139 g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (765)
|+++.|+..+++++..+|. +...++.+|.+++..|++++|+.++++ ...+|.++...+.+|.++..+|++++|+.+|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555555543 233444455555555555555555555 4444444444445555555555555555555
Q ss_pred HH
Q 004249 217 RQ 218 (765)
Q Consensus 217 ~~ 218 (765)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 176
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.1e-06 Score=79.77 Aligned_cols=244 Identities=14% Similarity=0.083 Sum_probs=110.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA 178 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 178 (765)
+.++-.|+|..++..-.+.-... ...+....+.+.|..+|.+...+......- .....+...++.....-++.+.-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 44555666666665555443222 444555556666666666554443332221 11223333344444334443333
Q ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249 179 MSCLSEAVKAD--PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG 256 (765)
Q Consensus 179 ~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 256 (765)
+.-+.+.+... ..+......-|.++...|++++|+...... .+.++...-..++.++.+.+-|...++++.+.
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333322221 112223333344555555555555554442 23333444444555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChH
Q 004249 257 HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHA 336 (765)
Q Consensus 257 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 336 (765)
+.+. .+..|+..+... ....+++..|.-+|+.+-.+. +..+
T Consensus 167 ded~----tLtQLA~awv~l----------------------------------a~ggek~qdAfyifeE~s~k~-~~T~ 207 (299)
T KOG3081|consen 167 DEDA----TLTQLAQAWVKL----------------------------------ATGGEKIQDAFYIFEELSEKT-PPTP 207 (299)
T ss_pred chHH----HHHHHHHHHHHH----------------------------------hccchhhhhHHHHHHHHhccc-CCCh
Confidence 4332 223344433322 001123444444455443333 3334
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHH
Q 004249 337 ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSI 392 (765)
Q Consensus 337 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 392 (765)
......+.+.+.+|+|++|...++.++.. ++++++++.++..+-...|...++.
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHH
Confidence 45555555555555555555555555555 5555555555555555555544333
No 177
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.83 E-value=8.8e-06 Score=77.97 Aligned_cols=294 Identities=13% Similarity=-0.028 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEEL--PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPW 168 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~ 168 (765)
..-+..|.+....|+-..|...-.+.-+.-..+ +-++..-++.-...|+++.|.+-|+.++. +|... -.+..|-.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 344555666666677777776666665443333 23444445566666777777777766653 22211 112222223
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCH-----HHHHHHHHHHHHc
Q 004249 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL---CPENI-----EALKMGAKLYQKS 240 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~-----~~~~~la~~~~~~ 240 (765)
....|..+.|+.+-+++-..-|.-+.++...-...+..|+++.|++..+..... .++-. ..+...+... -.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hc
Confidence 345677777777777777777776666666666666777777777766654332 22211 1111111111 22
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004249 241 GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA 320 (765)
Q Consensus 241 g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 320 (765)
-+...|...-.++.++.|+... .-..-+..+++.|+..++-.+++.+-+. .|.+. ++..|....--+.+
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvP--aav~AAralf~d~~~rKg~~ilE~aWK~----ePHP~-----ia~lY~~ar~gdta 311 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVP--AAVVAARALFRDGNLRKGSKILETAWKA----EPHPD-----IALLYVRARSGDTA 311 (531)
T ss_pred CChHHHHHHHHHHhhcCCccch--HHHHHHHHHHhccchhhhhhHHHHHHhc----CCChH-----HHHHHHHhcCCCcH
Confidence 3466666667777777777665 3346666777777777777777777666 33222 12222222222333
Q ss_pred HHHHHhh--cccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHH
Q 004249 321 EILLTAI--HWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL-KEREKSIIYFYK 397 (765)
Q Consensus 321 ~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 397 (765)
+.-++++ +....+++.+.....+..-+..|++..|..--+.+... .|.. .++..++.+-... |+-.+...++-+
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pre-s~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRE-SAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cchh-hHHHHHHHHHhhccCchHHHHHHHHH
Confidence 3333332 23334677777777777777788887777777777666 5533 5666677776665 788888888888
Q ss_pred HHHH
Q 004249 398 ALQI 401 (765)
Q Consensus 398 al~~ 401 (765)
+++.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 7764
No 178
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.82 E-value=3.9e-05 Score=73.74 Aligned_cols=293 Identities=15% Similarity=0.049 Sum_probs=215.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHh
Q 004249 130 ILGLVHDALGNTAKAMGCYWLAACYKQKD--SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF-KLKFHLASLYVEL 206 (765)
Q Consensus 130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 206 (765)
.-|.+....|+-..|.+.-.++-++-..+ +-++..-++.-.-.|+++.|.+-|+.++. +|..- -.+..|-.-....
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 34667777899999999988877543333 34455567778889999999999998876 34322 2233333344578
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCCC-HHHHHHHHHHH-HHhccHHH
Q 004249 207 GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG---HPTEAD-FGVIDLLASML-VQMNAYDR 281 (765)
Q Consensus 207 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~-~~~~~~l~~~~-~~~~~~~~ 281 (765)
|..+.|..+-+++-...|.-+.++...-...+..|+++.|+++.+..... .++..+ .++...-+... .-..+...
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 99999999999999999999999988888899999999999999876543 232222 11111222222 22246788
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHH
Q 004249 282 VLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHM 361 (765)
Q Consensus 282 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 361 (765)
|...-.++.++ .+.....-..-+..++..|+..++-.+++.+-+.. .+++++.. .++.+.|+ .++.-+++
T Consensus 248 Ar~~A~~a~KL----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd--ta~dRlkR 317 (531)
T COG3898 248 ARDDALEANKL----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD--TALDRLKR 317 (531)
T ss_pred HHHHHHHHhhc----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC--cHHHHHHH
Confidence 89998999988 67777777788889999999999999999987654 23443322 23344554 44444444
Q ss_pred H---HhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCHHHHHHhcCCCCCcc
Q 004249 362 L---EANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLED-AKDEEAISLLTPPMSLE 436 (765)
Q Consensus 362 ~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 436 (765)
+ ..+ .|++.+..+..+...+..|++..|...-+.+....|. ..++..|+.+-... |+-.++...+.+++...
T Consensus 318 a~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 318 AKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 4 445 7999999999999999999999999999999999886 45677788887765 99999999998887753
No 179
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.81 E-value=2e-08 Score=93.69 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 004249 97 DASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT 176 (765)
Q Consensus 97 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 176 (765)
+|+.|+.+|+|++|+.+|.+.+..+|.++..+.+.+.+|++...|..|...+..++.++.....+|...+.+-..+|...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 45555666666666666666666666555555566666666666666665555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCCCCHHH
Q 004249 177 WAMSCLSEAVKADPNDFKL 195 (765)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~ 195 (765)
+|.+-++.++.+.|++.+.
T Consensus 183 EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHhHHHHHhhCcccHHH
Confidence 6655555555555554443
No 180
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.80 E-value=2.9e-05 Score=75.80 Aligned_cols=154 Identities=21% Similarity=0.218 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004249 139 GNTAKAMGCYWLAACYKQK--DSSLWKLIFPWLIEQGDTTWAMSCLSEAVK--ADPNDFKLKFHLASLYVELGNFQRAAD 214 (765)
Q Consensus 139 g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~ 214 (765)
+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444445555555444443 244444555555555555555555555554 344455555555555555555555555
Q ss_pred HHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 215 VYRQMVQLCPENIEALKMGAK-LYQKSGQIESSVDILEDYLKGHPT-EADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 215 ~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
.+..++...+.........+. ++...|+++.|...+.+++...|. ......+...+..+...++++.++..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 555555554444333333333 555555555555555555544332 111112333333444455555555555555554
No 181
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=0.00023 Score=70.51 Aligned_cols=459 Identities=14% Similarity=0.074 Sum_probs=227.6
Q ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCH---HHHHHHHHHH-HHcCCHHHHHHHHHHHHhcC---CCC----
Q 004249 126 NSYHILGLVHDALG--NTAKAMGCYWLAACYKQKDS---SLWKLIFPWL-IEQGDTTWAMSCLSEAVKAD---PND---- 192 (765)
Q Consensus 126 ~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~---- 192 (765)
.++..+|..+...| +..+++++++..+...|... .....+|.++ ....+++.|...++++..+. |..
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 44556666666666 66777777777666655432 3344455543 34566777777777776552 221
Q ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCC-CHHH
Q 004249 193 FKLKFHLASLYVELG-NFQRAADVYRQMVQLCPENI----EALKMGAKLYQKSGQIESSVDILEDYLKG-HPTEA-DFGV 265 (765)
Q Consensus 193 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~-~~~~ 265 (765)
.++...++.+|.... .+..|...+++++++....+ ...+.++.+..-..++..|++.+.-..+. ++... ..++
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~ 167 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRM 167 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHH
Confidence 244556666666655 66666777777776665543 34456666666667777766663322111 11100 0112
Q ss_pred HHHH--HHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHH------HHHHHH-HHHhcCChhHHHHHHHhhc---ccCCC
Q 004249 266 IDLL--ASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL------KIKAGI-CHIQLGNTDKAEILLTAIH---WENVS 333 (765)
Q Consensus 266 ~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------~~~l~~-~~~~~~~~~~A~~~~~~~~---~~~~~ 333 (765)
++.+ +.++....+..+.......+-++.....++...- +..+-. .|...|+...+...++++- ....+
T Consensus 168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist 247 (629)
T KOG2300|consen 168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST 247 (629)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence 2222 2222333333333333333333322111111110 111111 1223343333333333221 00000
Q ss_pred Ch---HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC-CHHHHHHHHH--HHHHhccHHHHHHHHHHHHHHc-----
Q 004249 334 DH---AESINEIADLFKNRELYSTALKYYHMLEANAGVHN-DGCLHLKIAE--CSLALKEREKSIIYFYKALQIL----- 402 (765)
Q Consensus 334 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~----- 402 (765)
.+ .+.+ .|.. ....|.- -|+ ...++..+-. .-.-.|-+++|.++-++++...
T Consensus 248 ~~~~h~e~i---------lgsp--s~~l~~w------lpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq 310 (629)
T KOG2300|consen 248 SSRGHDEKI---------LGSP--SPILFEW------LPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQ 310 (629)
T ss_pred CCCCccccc---------cCCC--ChHHHhh------ccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 00 0000 0000 0000000 000 0001111111 0112344556666555555432
Q ss_pred -CCCHHH--------HHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHH
Q 004249 403 -EDNIDA--------RLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVD 473 (765)
Q Consensus 403 -p~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 473 (765)
|....+ .-.++.+-.-.|++.+|++-+..+.+..... |.........+.+.+.+|..-..-+.++.|..
T Consensus 311 ~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~--p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~ 388 (629)
T KOG2300|consen 311 ADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF--PTPLLLRAHEAQIHMLLGLYSHSVNCYENAEF 388 (629)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC--CchHHHHHhHHHHHHHHhhHhhhcchHHHHHH
Confidence 111111 2224444555799999988776655533222 11111223346778888888889999999999
Q ss_pred hhHHHHhhhcccccccChhh--HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC-CCCch-----HHHHHHHHhhccc
Q 004249 474 MLLPLVCESSHQEETFNHEE--HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG-KFPVE-----KEELYFLGAQIPC 545 (765)
Q Consensus 474 ~~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~-----~~~~~~~~~~~~~ 545 (765)
.|..+++.. ... ..-+-.++|.+|.+.|+-+.-.++++. ++|. ..+-. ...++..|. ..+
T Consensus 389 hf~~a~k~t--------~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~gl-faf 456 (629)
T KOG2300|consen 389 HFIEATKLT--------ESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGL-FAF 456 (629)
T ss_pred HHHHHHHhh--------hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHH-HHH
Confidence 998888643 222 334455788889988876655444442 2322 11111 233444444 788
Q ss_pred ccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHH
Q 004249 546 NTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAARE 625 (765)
Q Consensus 546 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~ 625 (765)
.++++.+|...+++.++.. |...++.+. ...++++|++....|+..++...
T Consensus 457 ~qn~lnEaK~~l~e~Lkma--naed~~rL~---------------------------a~~LvLLs~v~lslgn~~es~nm 507 (629)
T KOG2300|consen 457 KQNDLNEAKRFLRETLKMA--NAEDLNRLT---------------------------ACSLVLLSHVFLSLGNTVESRNM 507 (629)
T ss_pred HhccHHHHHHHHHHHHhhc--chhhHHHHH---------------------------HHHHHHHHHHHHHhcchHHHHhc
Confidence 9999999999999999864 222212111 12246789999999999998888
Q ss_pred HHHHHhhC---CCChHHHHHHH
Q 004249 626 YLEAYKLL---PENPLINLCVG 644 (765)
Q Consensus 626 ~~~a~~~~---p~~~~~~~~l~ 644 (765)
..-++.+. |+-|......+
T Consensus 508 vrpamqlAkKi~Di~vqLws~s 529 (629)
T KOG2300|consen 508 VRPAMQLAKKIPDIPVQLWSSS 529 (629)
T ss_pred cchHHHHHhcCCCchHHHHHHH
Confidence 87666544 66555554433
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.77 E-value=2.5e-07 Score=88.48 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPND---FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN---IEALKMGAKLYQKSGQIES 245 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~ 245 (765)
.|++++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++.+|.++...|++++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 445555555555555544444 2444555555555555555555555555444442 3444444555555555555
Q ss_pred HHHHHHHHHhcCCCC
Q 004249 246 SVDILEDYLKGHPTE 260 (765)
Q Consensus 246 A~~~~~~~~~~~p~~ 260 (765)
|+..|+++++.+|++
T Consensus 236 A~~~~~~vi~~yP~s 250 (263)
T PRK10803 236 AKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHCcCC
Confidence 555555555555544
No 183
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.76 E-value=3.5e-05 Score=75.24 Aligned_cols=227 Identities=25% Similarity=0.256 Sum_probs=185.6
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPN--DFKLKFHLASLYVELGNFQRAADVYRQMVQ--LCPENIEALKMGAKLYQKSGQIESSV 247 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 247 (765)
.+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 56778888888888887776 378888999999999999999999999987 67888889999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHh
Q 004249 248 DILEDYLKGHPTEADFGVIDLLAS-MLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTA 326 (765)
Q Consensus 248 ~~~~~~~~~~p~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 326 (765)
..+..++...+.... .....+. ++...|+++.|...+.+++.. .+............+..+...++++.++..+.+
T Consensus 116 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDPDL--AEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 999999998877744 3335555 899999999999999999664 211013444555556667788899999999999
Q ss_pred hcccCCCC-hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 327 IHWENVSD-HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 327 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
++... +. ....+..++..+...+++..|+..+..++.. .|.....+..++..+...+..+.+...+.+++...|.
T Consensus 193 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 193 ALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 87766 44 5778888999999999999999999999888 6766677777788777777799999999999998887
No 184
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.6e-07 Score=91.07 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249 194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML 273 (765)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 273 (765)
.++.+++.++.++++|..|+....+++...|+|..+++..|.++...|+++.|+..|+++++..|++.. +...+..+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka--~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA--ARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH--HHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777777777777777777777755 344555555
Q ss_pred HHhccHHHH-HHHHHHHHHH
Q 004249 274 VQMNAYDRV-LKHIELVDLV 292 (765)
Q Consensus 274 ~~~~~~~~A-~~~~~~~~~~ 292 (765)
.+...+.+. .+.|..+...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 555444443 5566666554
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.74 E-value=3.6e-07 Score=75.16 Aligned_cols=95 Identities=22% Similarity=0.222 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN---DFKLKFHL 199 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 199 (765)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 355666666666666666666666666654332 345666666666666666666666666666555 45555556
Q ss_pred HHHHHHhCCHHHHHHHHHHHH
Q 004249 200 ASLYVELGNFQRAADVYRQMV 220 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al 220 (765)
+.++...|+.++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666665554
No 186
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00043 Score=69.80 Aligned_cols=397 Identities=11% Similarity=0.017 Sum_probs=215.7
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 004249 149 WLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228 (765)
Q Consensus 149 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 228 (765)
++-++.+|.+..+|+.|.+-+..+ -+++....|++.+...|..+.+|..........++|+.....|.+++...- +.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence 566788999999999998877666 899999999999999999999999999999999999999999999986433 244
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHH----Hh---cCCCCCCHHHHHHHHHHH---------HHhccHHHHHHHHHHHHH
Q 004249 229 ALKM-GAKLYQKSGQIESSVDILEDY----LK---GHPTEADFGVIDLLASML---------VQMNAYDRVLKHIELVDL 291 (765)
Q Consensus 229 ~~~~-la~~~~~~g~~~~A~~~~~~~----~~---~~p~~~~~~~~~~l~~~~---------~~~~~~~~A~~~~~~~~~ 291 (765)
.|.. +..+-...|+...+....-++ +. .++.+.. +|...+..+ ..+.+.+...+.|++++.
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~s--iW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYS--IWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccch--hHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 4432 333333445544443333333 22 2333333 455444433 223355555666666665
Q ss_pred HhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc--C--
Q 004249 292 VYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA--G-- 367 (765)
Q Consensus 292 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~-- 367 (765)
. .-.+.+-..+ .-..+++.+.... ..-.+--....|..|...+++...+. .
T Consensus 166 t----Pm~nlEkLW~------DY~~fE~~IN~~t---------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r 220 (656)
T KOG1914|consen 166 T----PMHNLEKLWK------DYEAFEQEINIIT---------------ARKFIGERSPEYMNARRVYQELQNLTRGLNR 220 (656)
T ss_pred C----ccccHHHHHH------HHHHHHHHHHHHH---------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcc
Confidence 4 1111111110 0011111111000 00001111222333333333332210 0
Q ss_pred -CCC-----------CHHHHHHHHHHHHHh------cc--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC------
Q 004249 368 -VHN-----------DGCLHLKIAECSLAL------KE--REKSIIYFYKALQILEDNIDARLTLASLLLEDAK------ 421 (765)
Q Consensus 368 -~~~-----------~~~~~~~la~~~~~~------g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------ 421 (765)
.|. ..+.|.++...-... |. -..-.-.|++++..-+-.++.|+..+..+...++
T Consensus 221 ~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~ 300 (656)
T KOG1914|consen 221 NAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKG 300 (656)
T ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhc
Confidence 110 012232222221111 11 1122234667777777788888776666555555
Q ss_pred --------HHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcch---hHHHHHhhHHHHhhhcccccccC
Q 004249 422 --------DEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM---IEGFVDMLLPLVCESSHQEETFN 490 (765)
Q Consensus 422 --------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~l~~~~~ 490 (765)
.+++..+++.+++..... +...++.++..-...-+ .+.--..+.+++.- .
T Consensus 301 d~~~a~~~t~e~~~~yEr~I~~l~~~-----------~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~--------~ 361 (656)
T KOG1914|consen 301 DVPDAKSLTDEAASIYERAIEGLLKE-----------NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI--------E 361 (656)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh--------h
Confidence 566677776666532211 11222222222211111 22333334333321 1
Q ss_pred hhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhh
Q 004249 491 HEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTT 570 (765)
Q Consensus 491 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 570 (765)
+.+-.-++..+-....+..-...|+.+|.++.+.... + ....+..... =|+..++..-|...|+-.+..+++++..
T Consensus 362 ~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~--~-hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf~d~p~y 437 (656)
T KOG1914|consen 362 DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT--R-HHVFVAAALM-EYYCSKDKETAFRIFELGLKKFGDSPEY 437 (656)
T ss_pred ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC--c-chhhHHHHHH-HHHhcCChhHHHHHHHHHHHhcCCChHH
Confidence 1111223334444445556678889999998875521 1 1112222222 4667899999999999999999999999
Q ss_pred hHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 004249 571 WNRYYKLVSRFEKIFSKHAKLLRNVRAK 598 (765)
Q Consensus 571 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 598 (765)
-+.|...+...++. ..+...+++.+..
T Consensus 438 v~~YldfL~~lNdd-~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 438 VLKYLDFLSHLNDD-NNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHHHhCcc-hhHHHHHHHHHhc
Confidence 99998888877765 4666777777665
No 187
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=5.1e-06 Score=81.77 Aligned_cols=338 Identities=13% Similarity=0.059 Sum_probs=216.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHH-hccCCC------C--HHHHHHH
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLA-ACYKQK------D--SSLWKLI 165 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~p~------~--~~~~~~l 165 (765)
..+...+++..+...+..-.+.+..+..+.+.+.+..+..++..|++.+|.+.+... +...|. . -.+|.++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 344556777888888888888888777788899999999999999999999988654 222222 2 2456789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc---------CC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249 166 FPWLIEQGDTTWAMSCLSEAVKA---------DP---------NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI 227 (765)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 227 (765)
|.+++..|.|.-+..+|.++++. .| ...++.++.|..|...|+.-.|.++|.++......+|
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999851 11 2346789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHH--H--------------Hhc-----CCCCCC-HHHHHHHHHHHHHhccH---
Q 004249 228 EALKMGAKLYQKSGQ---IESSVDILED--Y--------------LKG-----HPTEAD-FGVIDLLASMLVQMNAY--- 279 (765)
Q Consensus 228 ~~~~~la~~~~~~g~---~~~A~~~~~~--~--------------~~~-----~p~~~~-~~~~~~l~~~~~~~~~~--- 279 (765)
..|..++.++....+ .++......+ . ++. .|.+.. +..-..++.+..+.+-+
T Consensus 370 rlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~ 449 (696)
T KOG2471|consen 370 RLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLN 449 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCc
Confidence 999999998874321 2221111111 0 000 000000 00111233333222110
Q ss_pred --HHHHHHHHHHHHH----------------------------hcCCCCccH--------HHHHHHHHHHHhcCChhHHH
Q 004249 280 --DRVLKHIELVDLV----------------------------YYSGKELLL--------ALKIKAGICHIQLGNTDKAE 321 (765)
Q Consensus 280 --~~A~~~~~~~~~~----------------------------~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~ 321 (765)
..--..+.-+... .+++.|... .++...+.+-+.+|+.-.|+
T Consensus 450 e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL 529 (696)
T KOG2471|consen 450 EKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKAL 529 (696)
T ss_pred hhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Confidence 0000001000000 001111111 23344566677889999999
Q ss_pred HHHHhhcccCCCChHHHHHHHHHHH-----HccccHHHHHHHHHHHH------hcc---------------CCC------
Q 004249 322 ILLTAIHWENVSDHAESINEIADLF-----KNRELYSTALKYYHMLE------ANA---------------GVH------ 369 (765)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~~------~~~---------------~~~------ 369 (765)
..-.+++.. ++-..++..+|.+| +-..+..+|...+..-. .+. .+|
T Consensus 530 ~~a~kLLq~--~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~ 607 (696)
T KOG2471|consen 530 SAATKLLQL--ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTR 607 (696)
T ss_pred HHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCc
Confidence 988888754 44456666666554 45667777776665411 000 011
Q ss_pred ----CC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249 370 ----ND-----GCLHLKIAECSLALKEREKSIIYFYKALQILE--DNIDARLTLASLLLEDAKDEEAISLLTPPMS 434 (765)
Q Consensus 370 ----~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (765)
.. ...++++|.++.-+|++++|...+..+..+-+ .++.+......+-..+|+...|...+++..-
T Consensus 608 q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 608 QSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred ccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 01 23568899999999999999999999988877 4556666666666778999999998877654
No 188
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.71 E-value=4.5e-07 Score=91.31 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=63.7
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004249 136 DALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV 215 (765)
Q Consensus 136 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 215 (765)
...++++.|+..|++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+.+
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3445555555555555554432 3344555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 216 YRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED 252 (765)
Q Consensus 216 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (765)
.++++...|.+...|..|+.+|...|+++.|+..++.
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 5555555555555555555555555555555554443
No 189
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.71 E-value=3.3e-06 Score=77.39 Aligned_cols=195 Identities=18% Similarity=0.117 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHH
Q 004249 494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNR 573 (765)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 573 (765)
.+..++.-|....+.|++++|.+.|+.+....|.+ |-.+.....++- .+++.++++.|+...++.+..+|.++.+-..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s-~~~~qa~l~l~y-A~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS-PYSEQAQLDLAY-AYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cccHHHHHHHHH-HHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 46678888899999999999999999999888653 223455555555 8999999999999999999999999877554
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhC
Q 004249 574 YYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALG 653 (765)
Q Consensus 574 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 653 (765)
++-.... .+ ...-...-.+.--..|+..|...+...||++.+-......-.-
T Consensus 111 ~YlkgLs----------~~--------------~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~---- 162 (254)
T COG4105 111 YYLKGLS----------YF--------------FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL---- 162 (254)
T ss_pred HHHHHHH----------Hh--------------ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH----
Confidence 3321110 00 0001111223344688999999999999987654322221110
Q ss_pred cccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccc
Q 004249 654 VRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSD 733 (765)
Q Consensus 654 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (765)
..++ ..--..+|+-|..-|.+..|+.-++.+++..|+ +.
T Consensus 163 ----------~d~L-------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~------------------t~ 201 (254)
T COG4105 163 ----------NDAL-------------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPD------------------TS 201 (254)
T ss_pred ----------HHHH-------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc------------------cc
Confidence 0000 123477899999999999999999999998763 23
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHH
Q 004249 734 LRREAAYNLHLIYKKSGAVDLARQVL 759 (765)
Q Consensus 734 ~~~ea~~nl~~iy~~~g~~~~A~~~l 759 (765)
...+++..+..+|..-|-.++|...-
T Consensus 202 ~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 202 AVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred chHHHHHHHHHHHHHhCChHHHHHHH
Confidence 45789999999999999999887654
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.70 E-value=4.9e-08 Score=72.77 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=49.5
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 102 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+.+++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567777788888888877777777777778888888888888888887777777777666665554
No 191
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.69 E-value=8.8e-09 Score=96.01 Aligned_cols=245 Identities=12% Similarity=-0.047 Sum_probs=154.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249 128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG 207 (765)
Q Consensus 128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 207 (765)
....|.-|+++|.|++|+.+|.+++..+|.++..+.+.+.+|+++..|..|..-+..++.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 44568888888888888888888888888888888888888888888888888888888887777788888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249 208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE 287 (765)
Q Consensus 208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 287 (765)
...+|.+.++.++++.|++.+....++.+- ...++. -+.+..|.... + ..-..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----Sl~E~~----I~~KsT~G~~~--A-----------------~Q~~~ 232 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARIN----SLRERK----IATKSTPGFTP--A-----------------RQGMI 232 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhc----chHhhh----HHhhcCCCCCc--c-----------------ccchh
Confidence 888888888888888888766544443332 222111 11222222221 1 11111
Q ss_pred HHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccC
Q 004249 288 LVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAG 367 (765)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 367 (765)
+++.. -.-|..+...|.++.++.++..-+... ..+.....+ +..+.+.-+++.++.-..+.+..
T Consensus 233 Q~l~~------------K~~G~~Fsk~~~~~~~i~~~~~~~A~~-~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~-- 296 (536)
T KOG4648|consen 233 QILPI------------KKPGYKFSKKAMRSVPVVDVVSPRATI-DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP-- 296 (536)
T ss_pred hhccc------------cCcchhhhhhhccccceeEeecccccc-CccccCccc-HHHHHHHhhcchhHHHHHHhcCC--
Confidence 11110 012333455566666666555432221 111111112 45556666777787777777666
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249 368 VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL 415 (765)
Q Consensus 368 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 415 (765)
+|.........+.+-.-.|...++...++.++.+.|.+..+...+...
T Consensus 297 ~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~ 344 (536)
T KOG4648|consen 297 KPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRK 344 (536)
T ss_pred CCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhh
Confidence 555444455556666667778888899999999988876655554443
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.69 E-value=5.3e-07 Score=90.82 Aligned_cols=121 Identities=23% Similarity=0.304 Sum_probs=110.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA 178 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 178 (765)
..+...++++.|+.+|++..+.+| ++...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 445567899999999999988775 47778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249 179 MSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL 222 (765)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 222 (765)
+.+.++++...|.+...|..|+.+|...|+++.|+..+..+--.
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999999999999999999999999999888765433
No 193
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.67 E-value=5.8e-07 Score=74.86 Aligned_cols=84 Identities=17% Similarity=0.061 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWKL 164 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~ 164 (765)
...++..|...++.|+|++|++.|+.+....|..+ .+.+.+|.+|+..|++++|+..+++.++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 45678889999999999999999999998888654 7889999999999999999999999999998876 57777
Q ss_pred HHHHHHHcCC
Q 004249 165 IFPWLIEQGD 174 (765)
Q Consensus 165 la~~~~~~g~ 174 (765)
.|.+++.+..
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 8888777654
No 194
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=5.5e-07 Score=83.38 Aligned_cols=107 Identities=21% Similarity=0.147 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CHHHHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQK---DSSLWKLI 165 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l 165 (765)
...+..|..++..|+|..|...|...++..|++. .+++.||.+++.+|+++.|...|..+.+..|+ -+++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3378889999999999999999999999999764 89999999999999999999999999887665 45889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 004249 166 FPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFH 198 (765)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (765)
|.+...+|+.++|...|+++++..|+...+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999988766443
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.1e-06 Score=75.81 Aligned_cols=106 Identities=21% Similarity=0.117 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249 130 ILGLVHDALGNTAKAMGCYWLAACYKQKDS-----SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (765)
.-|.-++..|+|.+|..-|..++.+.|..+ ..+.+.|.+.++++.++.|+..+.++++++|.+..++...+.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 345556666666666666666666655433 234455666666666666666666666666666666666666666
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAK 235 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 235 (765)
....+++|+..|.++++.+|..-.+....++
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 6666666666666666666665544444443
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.60 E-value=1.3e-06 Score=71.82 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 004249 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFHLASLYVELGNFQRAADVYRQMVQLCPE---NIEALKMG 233 (765)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 233 (765)
.+++.+|.++-..|+.++|+.+|++++...... ..+++.+|..+...|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 356667777777777777777777777754333 456677777777777777777777777777666 55566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 004249 234 AKLYQKSGQIESSVDILEDYLK 255 (765)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~~~~ 255 (765)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777665553
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.58 E-value=1.8e-07 Score=69.70 Aligned_cols=57 Identities=26% Similarity=0.517 Sum_probs=23.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 228 (765)
.|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 344444444444444444444444444444444444444444444444444444333
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.57 E-value=8.9e-06 Score=69.60 Aligned_cols=156 Identities=15% Similarity=0.032 Sum_probs=126.0
Q ss_pred HHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcccc
Q 004249 272 MLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNREL 351 (765)
Q Consensus 272 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 351 (765)
...+.=+++....-..+.+.. .....-.+.++......|++.+|...|++++......++..+..+++..+..++
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~-----ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 65 ALQQKLDPERHLREATEELAI-----APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhh-----chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 333333444444444444444 224556788999999999999999999999887778889999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 004249 352 YSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTP 431 (765)
Q Consensus 352 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (765)
+..|...++++.+.......+.....+|+.+...|.+.+|...|+.++...|+ +.+....+..+..+|+.++|...+..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 99999999999988433456778889999999999999999999999999886 77888899999999998888776644
Q ss_pred CC
Q 004249 432 PM 433 (765)
Q Consensus 432 ~~ 433 (765)
..
T Consensus 219 v~ 220 (251)
T COG4700 219 VV 220 (251)
T ss_pred HH
Confidence 43
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=3.9e-05 Score=69.62 Aligned_cols=137 Identities=14% Similarity=0.086 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc----cCCCCCHHHHHHH
Q 004249 303 LKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN----AGVHNDGCLHLKI 378 (765)
Q Consensus 303 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l 378 (765)
+.+.+..++...|.|.-....+.++++.+++..+.....+|.+-++.|+.+.|..+|+++.+. .....+..+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 455667778888899999999999988888888999999999999999999999999865543 1123345677788
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249 379 AECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY 439 (765)
Q Consensus 379 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (765)
+.++...+++..|...|.+++..+|.++.+....+.++.-.|+...|++.++.+....|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 8889999999999999999999999999999999999999999999999999999988876
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.51 E-value=6.6e-07 Score=67.72 Aligned_cols=62 Identities=26% Similarity=0.435 Sum_probs=29.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 229 (765)
+|...+++++|+.++++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 34444444444444444444444444444444444444444444444444444444444433
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=3.2e-06 Score=78.39 Aligned_cols=103 Identities=19% Similarity=0.106 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q 004249 128 YHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN---DFKLKFHLAS 201 (765)
Q Consensus 128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 201 (765)
.|..+.-++..|+|..|...|...++..|+. +.+++.||.+++.+|++++|...|..+++..|+ -+++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4555666666666666666666666665553 255666666666666666666666666655443 2455666666
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 004249 202 LYVELGNFQRAADVYRQMVQLCPENIEAL 230 (765)
Q Consensus 202 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 230 (765)
+...+|+.++|...|+++++..|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 66666666666666666666666655443
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.51 E-value=1.9e-05 Score=67.60 Aligned_cols=149 Identities=13% Similarity=0.050 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004249 140 NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA-DPNDFKLKFHLASLYVELGNFQRAADVYRQ 218 (765)
Q Consensus 140 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 218 (765)
+++....-..+.+...|.. .-.+.||....+.|++.+|...|++++.- ...++..+..+++..+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3444444444444444432 23456777777777777777777777653 456677777777777777777777777777
Q ss_pred HHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 219 MVQLCPEN--IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 219 al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
..+.+|.. ++....+|..+...|++.+|...|+.++...|+.. .....+..+.++|+.++|...+..+.+.
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~---ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ---ARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH---HHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 77766643 55666777777777777777777777777776643 3446677777777777766666555444
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.50 E-value=7.4e-07 Score=67.47 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=43.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLI 165 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 165 (765)
.+++..++|++|+..+++++..+|+++..+...|.++..+|++.+|+..|+++++..|+++.+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4456666666666666666666666666666666666666666666666666666666666554433
No 204
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.49 E-value=0.0015 Score=67.33 Aligned_cols=213 Identities=11% Similarity=-0.051 Sum_probs=144.2
Q ss_pred HHccccHHHHHHHHHHHHhccC------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 004249 346 FKNRELYSTALKYYHMLEANAG------VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLED 419 (765)
Q Consensus 346 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 419 (765)
+.......+.+..++..+...- .+.....|..........|+++...-.|++++--.....+.|...+.-....
T Consensus 265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~ 344 (577)
T KOG1258|consen 265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS 344 (577)
T ss_pred HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc
Confidence 3334444555555665554321 1223456777777788889999999999998887777888899888888888
Q ss_pred CCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHH
Q 004249 420 AKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLII 499 (765)
Q Consensus 420 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 499 (765)
|+.+-|...+..+.+..... .+.+...-+.+-...|++..|...++....+ -|....+..
T Consensus 345 ~~~~~~~~~~~~~~~i~~k~-----------~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e---------~pg~v~~~l 404 (577)
T KOG1258|consen 345 GDVSLANNVLARACKIHVKK-----------TPIIHLLEARFEESNGNFDDAKVILQRIESE---------YPGLVEVVL 404 (577)
T ss_pred CchhHHHHHHHhhhhhcCCC-----------CcHHHHHHHHHHHhhccHHHHHHHHHHHHhh---------CCchhhhHH
Confidence 98888888877766654332 1356677777888888999999888877753 266666667
Q ss_pred HHHHHHHhhhcHHHHHH---HHHHHHHhccCCCCchHHHH-HHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHH
Q 004249 500 DLCKTLASLHRYEDAIK---IINLILKLGYGKFPVEKEEL-YFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYY 575 (765)
Q Consensus 500 ~l~~~~~~~~~~~~A~~---~~~~al~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 575 (765)
.-+....+.|+.+.+.. ++.....-. ..+.-...+ .......+.-.++.+.|...+.++++..|++...+..+.
T Consensus 405 ~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 405 RKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELI 482 (577)
T ss_pred HHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHH
Confidence 77777788888888874 322222111 112222222 222233445578999999999999999999988888776
Q ss_pred HHHhh
Q 004249 576 KLVSR 580 (765)
Q Consensus 576 ~~~~~ 580 (765)
.+...
T Consensus 483 ~~~~~ 487 (577)
T KOG1258|consen 483 RFELI 487 (577)
T ss_pred HHHHh
Confidence 66543
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.47 E-value=5.3e-06 Score=69.21 Aligned_cols=82 Identities=12% Similarity=-0.043 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF---KLKFHL 199 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l 199 (765)
..++.-|...+..|+|++|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++-++++|.++ -+++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 445555555555555555555555555544432 24455555555555555555555555555555443 344455
Q ss_pred HHHHHHhC
Q 004249 200 ASLYVELG 207 (765)
Q Consensus 200 a~~~~~~g 207 (765)
|.++..+.
T Consensus 91 gL~~~~~~ 98 (142)
T PF13512_consen 91 GLSYYEQD 98 (142)
T ss_pred HHHHHHHh
Confidence 55444443
No 206
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.43 E-value=0.006 Score=67.51 Aligned_cols=439 Identities=13% Similarity=0.050 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHhhCCC----chHHHHHHHHHH-HcCCHHHHHHHHHHHhccCC--CCH----HHHHHHHHHHHHcCCHH
Q 004249 108 EEAISVLHEVIRLEEEL----PNSYHILGLVHD-ALGNTAKAMGCYWLAACYKQ--KDS----SLWKLIFPWLIEQGDTT 176 (765)
Q Consensus 108 ~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~p--~~~----~~~~~la~~~~~~g~~~ 176 (765)
..|+.+++-+++..+-. ..+++.+|.+++ ...+++.|..++.+++.+.. +.. .+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 35677777777432222 357888899887 78999999999999987653 322 23455788888888777
Q ss_pred HHHHHHHHHHhcCCC---CH-HHHHHH--HHHHHHhCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHH
Q 004249 177 WAMSCLSEAVKADPN---DF-KLKFHL--ASLYVELGNFQRAADVYRQMVQLC--PENIEA----LKMGAKLYQKSGQIE 244 (765)
Q Consensus 177 ~A~~~~~~al~~~p~---~~-~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~~~ 244 (765)
|...+++.++.... .. ...+.+ .......+++..|++.++.+.... +.++.+ ....+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 99999998886433 22 222222 333333479999999999988765 344332 234456666778888
Q ss_pred HHHHHHHHHHhc------CCCC--CCHHHHHHHHH--HHHHhccHHHHHHHHHHHHHHhc---CCC--------------
Q 004249 245 SSVDILEDYLKG------HPTE--ADFGVIDLLAS--MLVQMNAYDRVLKHIELVDLVYY---SGK-------------- 297 (765)
Q Consensus 245 ~A~~~~~~~~~~------~p~~--~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~---~~~-------------- 297 (765)
++++..+++... +|.. +...+|..+.. ++...|+++.+...+++.-.... ...
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 888888877432 2222 12334444444 44556777777766665543321 110
Q ss_pred -----------Ccc----------HHHHHHHHHHHHhcCChhHHHHHHHhhcccC---C-------CCh-----------
Q 004249 298 -----------ELL----------LALKIKAGICHIQLGNTDKAEILLTAIHWEN---V-------SDH----------- 335 (765)
Q Consensus 298 -----------~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~-------~~~----------- 335 (765)
+.. .-++..-|......+..++|.+++.+++..- . +..
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 000 0112333556667777778877777754211 0 000
Q ss_pred ----HHHHHHHHHHHHccccHHHHHHHHHHHHhccC-CC------CCHHHHHHHHHHHHHhccHHHHHHHHH--------
Q 004249 336 ----AESINEIADLFKNRELYSTALKYYHMLEANAG-VH------NDGCLHLKIAECSLALKEREKSIIYFY-------- 396 (765)
Q Consensus 336 ----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~------~~~~~~~~la~~~~~~g~~~~A~~~~~-------- 396 (765)
..+.+..+...+-.+++..|...++.+..... .| ..+..++..|..+...|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 12344556666788999999999987775421 12 246788999999999999999999998
Q ss_pred HHHHHcCCCH---HHHHHHHHHHHHcCCHHH----HHHhcCCCC---CccccccCcccchhhhhhhHHHHHHHHHHH--h
Q 004249 397 KALQILEDNI---DARLTLASLLLEDAKDEE----AISLLTPPM---SLENKYVNSDKTHAWWLNIRIKIKLCRIYK--A 464 (765)
Q Consensus 397 ~al~~~p~~~---~~~~~l~~~~~~~g~~~~----A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~ 464 (765)
.+....+.+. -+..++..++...+.... ...++++.. ...+.. .. ...+..+...+. .
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~--------~~--~~a~~~~~~~~~~~~ 506 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNS--------YN--RTAYCLVLATYNTFE 506 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccH--------HH--HHHHHHHHHHHhhCC
Confidence 3333333332 233345666665554222 444444332 222221 11 111112222221 1
Q ss_pred cchhHHHHHhhHHHHhhhcccccccChhh-HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHH-----H
Q 004249 465 KGMIEGFVDMLLPLVCESSHQEETFNHEE-HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELY-----F 538 (765)
Q Consensus 465 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~-----~ 538 (765)
.-...++...+...++...+ ...... -.-++.-++..++ .|+..+.......+......+ |+....++ .
T Consensus 507 ~~~~ne~k~~l~~~L~~~~~---~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~-~d~~~~LW~~v~~~ 581 (608)
T PF10345_consen 507 PFSSNEAKRHLQEALKMANN---KLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS-SDYSDQLWHLVASG 581 (608)
T ss_pred ccccHHHHHHHHHHHHHHHH---hhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHH
Confidence 11222444444444432200 001111 1224445555566 788888777777777766432 22233333 3
Q ss_pred HHhhcccccCChhhHHHHHHHHHH
Q 004249 539 LGAQIPCNTTDPKLWFDGVRFMVK 562 (765)
Q Consensus 539 ~~~~~~~~~g~~~~A~~~~~~~l~ 562 (765)
+....+...|+.++|.....+.-.
T Consensus 582 ~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 582 MLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 444456678888888887766543
No 207
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.40 E-value=1.6e-05 Score=80.14 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=78.2
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249 115 HEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS--SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND 192 (765)
Q Consensus 115 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 192 (765)
...++..|.+...+..-+..+...|+..+|..++..++...|... .....+|.++.+.|...+|--++..|+...|.-
T Consensus 203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~ 282 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF 282 (886)
T ss_pred HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc
Confidence 344445555444444444445567888888888888887765543 456778888888888888887777777766655
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249 193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 226 (765)
..-++.++.++.+.|.+......|..+.+..|..
T Consensus 283 t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 283 TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred cccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 5557788888888888888888887777777654
No 208
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.39 E-value=2.4e-06 Score=73.47 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhch--
Q 004249 619 HQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGL-- 696 (765)
Q Consensus 619 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-- 696 (765)
|+.|.+.++..+..+|+|+..+..-|.+++..+.-+........+.+|++-++++..+.|+...+++++|.+|-.+|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 678999999999999999999999999999988655545566788999999999999999999999999999988866
Q ss_pred ---------HHHHHHHHHHHHhhhhcc
Q 004249 697 ---------VSLAASYYEKVLAMYQKD 714 (765)
Q Consensus 697 ---------~~~A~~~y~k~l~~~~~~ 714 (765)
+++|..+|+++...+|+|
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 778999999999999864
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.38 E-value=3.9e-07 Score=70.00 Aligned_cols=71 Identities=24% Similarity=0.290 Sum_probs=58.3
Q ss_pred chHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004249 681 QEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLR 760 (765)
Q Consensus 681 ~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~ 760 (765)
..++.++|.+|..+|++++|+.+|++++.+.... +........+.+|+|.+|...|+++.|++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQL--------------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--------------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--------------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4689999999999999999999999999994321 01122347889999999999999999999999
Q ss_pred hhcCC
Q 004249 761 DHCTF 765 (765)
Q Consensus 761 k~l~~ 765 (765)
+.+.|
T Consensus 71 ~al~i 75 (78)
T PF13424_consen 71 KALDI 75 (78)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98753
No 210
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=5.4e-06 Score=71.74 Aligned_cols=109 Identities=14% Similarity=0.020 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELP-----NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
.+-..|+.++..|+|++|...|..++...|..+ ..|.+.|.+.++++.++.|+..+.++++++|.+..++...|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 344557777778888888888888887777654 355667777778888888888888888888877777777788
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 201 (765)
+|.++..+++|+.-|+++++.+|....+.-.++.
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 8888888888888888888877766555444433
No 211
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.38 E-value=0.0047 Score=63.88 Aligned_cols=381 Identities=12% Similarity=-0.010 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 004249 108 EEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLI-FPWLIEQGDTTWAMSCLSEAV 186 (765)
Q Consensus 108 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al 186 (765)
+.+...|...+...|.....|...|..-.+.|..+.+.+.|++++.--|-....|..+ +.+-...|+...-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5566677778888899889999999999999999999999999999999888888764 444456778888888999998
Q ss_pred hcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhc-
Q 004249 187 KADPND---FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK------SGQIESSVDILEDYLKG- 256 (765)
Q Consensus 187 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g~~~~A~~~~~~~~~~- 256 (765)
.....+ ...|-.....-..++++..-..+|++.++.--.....++..-.-+.. ....+++++.-......
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 875433 34555555566778889999999999887532222222111111111 12233333222222110
Q ss_pred --------------------CCCCCCHHHHHHHH-------HHHHHhccHHHHHHHHHHHHHHh----cCCCCccHHHHH
Q 004249 257 --------------------HPTEADFGVIDLLA-------SMLVQMNAYDRVLKHIELVDLVY----YSGKELLLALKI 305 (765)
Q Consensus 257 --------------------~p~~~~~~~~~~l~-------~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~ 305 (765)
.|.......-..+. .++.......+.+..++..+... .+..+.....|.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 01110000000111 12222223333333444443330 112233344566
Q ss_pred HHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh
Q 004249 306 KAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL 385 (765)
Q Consensus 306 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 385 (765)
.........|+++...-.|++++--. ......|...+......|+.+-|-..+..+.++. .|..+.++..-+..-...
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHHHHhh
Confidence 66777789999999999999986544 5668899999999988899999999998888876 788889999999999999
Q ss_pred ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH---HhcCCCCCccccccCcccchhhhhhhHHHHHHHHHH
Q 004249 386 KEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAI---SLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIY 462 (765)
Q Consensus 386 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (765)
|++..|...++++.+..|+...+-..-+....+.|+.+.+. .++.......... ..-...+...++..
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~---------~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN---------GILEKLYVKFARLR 450 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc---------chhHHHHHHHHHHH
Confidence 99999999999999988999999888888899999998888 4443333221111 11124444555544
Q ss_pred Hh-cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhh
Q 004249 463 KA-KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASL 508 (765)
Q Consensus 463 ~~-~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 508 (765)
.. .++.+.|...+.+++. ..|++...+..+.......
T Consensus 451 ~~i~~d~~~a~~~l~~~~~---------~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 451 YKIREDADLARIILLEAND---------ILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHhcCHHHHHHHHHHhhh---------cCCccHHHHHHHHHHHHhC
Confidence 33 5667778877777765 5677776666666554433
No 212
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.0099 Score=64.78 Aligned_cols=364 Identities=15% Similarity=0.116 Sum_probs=196.4
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL 164 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 164 (765)
+|+.....- .+++..+-..+-++++++++-.+.... .....+.... -.-+.....++..+.-..+.. .
T Consensus 983 dPe~vS~tV--kAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyDa~------~ 1053 (1666)
T KOG0985|consen 983 DPEEVSVTV--KAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYDAP------D 1053 (1666)
T ss_pred ChHHHHHHH--HHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCCch------h
Confidence 444444433 347777888888888888764332211 1111121111 223455556666655433311 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249 165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244 (765)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 244 (765)
+|.+....+-+++|...|++- .-+..+...+ ....+..+.|.++.+++ +.+.+|..+|....+.|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VL---ie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQVL---IENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHHHH---HHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 455556666677777777652 1122222111 22345566666665554 44567777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL 324 (765)
Q Consensus 245 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 324 (765)
+|++.|-++ +++. .+.....+..+.|.|++-+.++..+.+... .+.+-..+..+|.+.++..+-.+++
T Consensus 1122 dAieSyika-----dDps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-----E~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVR-----EPYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHhc-----CCcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-----CccchHHHHHHHHHhchHHHHHHHh
Confidence 777776553 2232 455666777777777777777766665521 1112223344455555554443332
Q ss_pred HhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc--
Q 004249 325 TAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL-- 402 (765)
Q Consensus 325 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 402 (765)
.. |+.+ -....|.-++..|.|+.|.-+|..+ .-|..++..+..+|+|+.|...-+++-...
T Consensus 1190 ~g------pN~A-~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1190 AG------PNVA-NIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred cC------CCch-hHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 21 2222 2334556666666666665555322 234555666666666666665555542210
Q ss_pred -------------------C----CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHH
Q 004249 403 -------------------E----DNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLC 459 (765)
Q Consensus 403 -------------------p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 459 (765)
. -..+-+-.+...|...|-+++-+.+++.++...... ...+..+|
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH------------MgmfTELa 1320 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH------------MGMFTELA 1320 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH------------HHHHHHHH
Confidence 0 122444567778888999999999999888765544 34455666
Q ss_pred HHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHH
Q 004249 460 RIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAI 515 (765)
Q Consensus 460 ~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 515 (765)
-+|.+-+ +++-.+.+.-.+ ....+..++..-+....|..+...|.+-..|+.|.
T Consensus 1321 iLYskyk-p~km~EHl~LFw-sRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1321 ILYSKYK-PEKMMEHLKLFW-SRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHhcC-HHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 6665433 444444433332 11122223344455666777777777777776654
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.28 E-value=3.6e-05 Score=61.65 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH----HHHHHHHHHH
Q 004249 94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS----SLWKLIFPWL 169 (765)
Q Consensus 94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~ 169 (765)
+-.+|..+...|+.+.|++.|.+++...|..+.+|.+.+..+.-+|+.++|+..+.+++++..... .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 345678888999999999999999999999999999999999999999999999999998863332 5677789999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC
Q 004249 170 IEQGDTTWAMSCLSEAVKADP 190 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p 190 (765)
...|+-+.|..-|+.+-++..
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCC
Confidence 999999999999988877654
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.26 E-value=1.4e-05 Score=79.87 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=44.0
Q ss_pred hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL---WKLIFPWLIEQGDTTWAMSCLSEAVKA 188 (765)
Q Consensus 121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 188 (765)
+|+++.+++++|.+|+.+|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666666666666666666666666666666666666533 666666666666666666666666664
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0014 Score=59.81 Aligned_cols=190 Identities=17% Similarity=0.139 Sum_probs=126.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 004249 197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM 276 (765)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 276 (765)
...|.+....|+..+.+.-+...... ..............+..+..+++-+.. +.+.++.++...
T Consensus 126 ~lhAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~~--------Vmy~~~~~llG~ 190 (366)
T KOG2796|consen 126 ILHAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRLGR--------VMYSMANCLLGM 190 (366)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHHHH--------HHHHHHHHHhcc
Confidence 44455556666666665555444321 111222222223334555555554332 455667777777
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc-----CCCChHHHHHHHHHHHHcccc
Q 004249 277 NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE-----NVSDHAESINEIADLFKNREL 351 (765)
Q Consensus 277 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~ 351 (765)
|.|.-.+..+.+.++.. ++..+.....+|.+..+.||.+.|..+|+..-+. ......-+..+.+.++.-.++
T Consensus 191 kEy~iS~d~~~~vi~~~---~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn 267 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYY---PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN 267 (366)
T ss_pred hhhhhhHHHHHHHHHhC---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence 77777777777777652 2455566667777777777777777777743211 113334566677788888899
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH
Q 004249 352 YSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI 406 (765)
Q Consensus 352 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 406 (765)
+..|...+.+++.. +|.++.+..+.|.|....|+..+|++.++.+++..|...
T Consensus 268 ~a~a~r~~~~i~~~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 268 FAEAHRFFTEILRM--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hHHHHHHHhhcccc--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999888 889999999999999999999999999999999888744
No 216
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.6e-05 Score=71.13 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=94.0
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 87 VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
.++....+-.+|+.++...+|..|+..|.+++.++|..+..|...+.|++++.+++.+....+++++++|+....++.+|
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 35556666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q 004249 167 PWLIEQGDTTWAMSCLSEAVKA 188 (765)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~ 188 (765)
........+++|+..+.++..+
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999665
No 217
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.21 E-value=0.00015 Score=73.41 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=88.5
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249 147 CYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF--KLKFHLASLYVELGNFQRAADVYRQMVQLCP 224 (765)
Q Consensus 147 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 224 (765)
....+++..|.+...+..-+..+...|+..+|..|+..++-..|... .++..+|.++.+.|...+|--++..++.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 34456666666555555555555678899999999998888765432 4678889999999998888888888887777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 225 ENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
.-..-++.++.++...|.+......|..+.+..|....
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 76666888899999999999888888888888776543
No 218
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00052 Score=64.82 Aligned_cols=154 Identities=11% Similarity=-0.037 Sum_probs=75.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCCH---HHHHHHHHHHHHcCC
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY-KQKDS---SLWKLIFPWLIEQGD 174 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~---~~~~~la~~~~~~g~ 174 (765)
...+..|++.+|...++++++..|.+.-++..--.+++.+|+...-...+++.+.. +|+.| .+.-.++..+...|-
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34444555555555555555555555555555555555555555555555555544 33332 222234444555555
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 004249 175 TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN----IEALKMGAKLYQKSGQIESSVDIL 250 (765)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~ 250 (765)
|++|.+..+++++++|.+..+....+.++...|++.++.++..+.-..-... ..-|...+..+...+.|+.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 5555555555555555555555555555555555555555544432211100 111233344444455555555555
Q ss_pred HH
Q 004249 251 ED 252 (765)
Q Consensus 251 ~~ 252 (765)
.+
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 44
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.17 E-value=9.5e-06 Score=81.10 Aligned_cols=69 Identities=17% Similarity=0.077 Sum_probs=52.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249 154 YKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKL---KFHLASLYVELGNFQRAADVYRQMVQL 222 (765)
Q Consensus 154 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 222 (765)
.+|+++.+|+++|.++...|++++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357777777777777777777777777777777777777644 777777777777777777777777775
No 220
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.15 E-value=7.7e-05 Score=59.83 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=71.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 004249 129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND----FKLKFHLASLYV 204 (765)
Q Consensus 129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 204 (765)
-..|......|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+.-+++++++.... -.++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456667777888888888888888888888888888888888888888888888887764322 245677777788
Q ss_pred HhCCHHHHHHHHHHHHHhCCC
Q 004249 205 ELGNFQRAADVYRQMVQLCPE 225 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~ 225 (765)
.+|+.+.|...|+.+-++...
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 888888887777777666443
No 221
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0017 Score=58.37 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=132.7
Q ss_pred HHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhhCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH--
Q 004249 89 PEIRRMLG-DASLHYALGRYEEAISVLHEVIRLEEE------LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-- 159 (765)
Q Consensus 89 ~~~~~~~~-~a~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-- 159 (765)
.+...++. -|+.|--.+++..|-..|.++-...-. ....|...+.||.+ +++.+|+.++++++++..+..
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf 109 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRF 109 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHH
Confidence 34445544 456677778899998888888664321 23456666666655 699999999999998865433
Q ss_pred ----HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-
Q 004249 160 ----SLWKLIFPWLIEQ-GDTTWAMSCLSEAVKADPND------FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI- 227 (765)
Q Consensus 160 ----~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 227 (765)
..+..+|.+|... .++++|+.+|+++-+-.... ..++...+..-...++|.+|+..|+++....-++.
T Consensus 110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 2344688888765 89999999999988764322 24567778888899999999999999987665553
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249 228 ------EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML 273 (765)
Q Consensus 228 ------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 273 (765)
..++.-|.+++...+.-.+...+++..+.+|...+.+-...+..+.
T Consensus 190 LKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 190 LKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 2344556667777888888889999999999988765555554444
No 222
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.001 Score=59.73 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHh
Q 004249 208 NFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKS-GQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQM 276 (765)
Q Consensus 208 ~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~ 276 (765)
+..+|+.++++++++..+- ...+..+|.+|..- .++++|+.+|+++-+....... -..+...+..-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 5555555555555443322 12244667777654 7788888888887665443322 11233555666677
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249 277 NAYDRVLKHIELVDLVYYSGKEL---LLALKIKAGICHIQLGNTDKAEILLTAIHWEN 331 (765)
Q Consensus 277 ~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 331 (765)
++|.+|+..|+++....-.+.-. .-...+..|.|++-..+.-.+...+++....+
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 88888888888876651111111 11224455666666666555555555543333
No 223
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.08 E-value=3.4e-05 Score=66.51 Aligned_cols=53 Identities=28% Similarity=0.423 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHH
Q 004249 176 TWAMSCLSEAVKADPNDFKLKFHLASLYVELGN-----------FQRAADVYRQMVQLCPENIE 228 (765)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~ 228 (765)
++|+.-|++++.++|+..++++.+|.+|...+. |++|..+|+++...+|++..
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 455555666666666666666666666655432 45555555555555555543
No 224
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.08 E-value=0.001 Score=66.93 Aligned_cols=61 Identities=21% Similarity=0.336 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289 (765)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 289 (765)
+...+|.+..+.|+.++|++.++.+++..|......+..++..++...+.|.++..++.+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3445666666666666666666666665554333345556666666666666666665554
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0014 Score=59.31 Aligned_cols=233 Identities=14% Similarity=0.040 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC-----CChHHHHHHHHHHHHccccHHH
Q 004249 280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENV-----SDHAESINEIADLFKNRELYST 354 (765)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~ 354 (765)
.++.+...+....+.++.......+...+.++...+++++|...+.++.+... -.-...+...+.+......+.+
T Consensus 10 ~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsE 89 (308)
T KOG1585|consen 10 SEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSE 89 (308)
T ss_pred HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444444445555566666667777777777777766653220 0112233344444455555566
Q ss_pred HHHHHHHHHhcc---CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 004249 355 ALKYYHMLEANA---GVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTP 431 (765)
Q Consensus 355 A~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (765)
+..+++++..+- ..|+.+..-...+--.....++++|++.|++++.+-..+. +...|.
T Consensus 90 vvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--------------r~~ma~----- 150 (308)
T KOG1585|consen 90 VVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--------------RDQMAF----- 150 (308)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--------------hHHHHH-----
Confidence 666665554330 0222222222222222333445555555555544322211 111111
Q ss_pred CCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcH
Q 004249 432 PMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRY 511 (765)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 511 (765)
..+...++++.+..++.+|...+.+-..-. ...-..+.....++....++....+|
T Consensus 151 ---------------------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~---~~~~~y~~~~k~~va~ilv~L~~~Dy 206 (308)
T KOG1585|consen 151 ---------------------ELYGKCSRVLVRLEKFTEAATAFLKEGVAA---DKCDAYNSQCKAYVAAILVYLYAHDY 206 (308)
T ss_pred ---------------------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHH---HHHhhcccHHHHHHHHHHHHhhHHHH
Confidence 122233444444444554444333322100 00002233444555556667777899
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHH
Q 004249 512 EDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGV 557 (765)
Q Consensus 512 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 557 (765)
..|...++..-++.....|++...+..++. .+..||.++....+
T Consensus 207 v~aekc~r~~~qip~f~~sed~r~lenLL~--ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 207 VQAEKCYRDCSQIPAFLKSEDSRSLENLLT--AYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhcchhcCccccChHHHHHHHHHHH--HhccCCHHHHHHHH
Confidence 999999988777655555666666666665 46778877766554
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00091 Score=60.41 Aligned_cols=123 Identities=11% Similarity=0.101 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHH
Q 004249 130 ILGLVHDALGNTAKAMGCYWLAACYKQKDS------SLWKLIFPWLIEQGDTTWAMSCLSEAVKA-----DPNDFKLKFH 198 (765)
Q Consensus 130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 198 (765)
.-+.+|...++|++|..++.++.+-..++. .++-..+.+...+..+.++..+++++... .|+....-..
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmale 115 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALE 115 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHH
Confidence 334455555555555555555553322211 12223334444445555555555555433 1222222222
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 199 LASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKSGQIESSVDILED 252 (765)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (765)
.+--....-++++|+.+|++++.+...+ .+.+...++++.+..++++|-..+.+
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 2222333444555555555555443222 22334444555555555555544444
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.03 E-value=6.1e-06 Score=63.33 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=8.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Q 004249 197 FHLASLYVELGNFQRAADVYRQM 219 (765)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~a 219 (765)
..+|.++...|++++|+.+++++
T Consensus 50 ~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 50 NNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333333
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00064 Score=63.81 Aligned_cols=160 Identities=18% Similarity=0.132 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPW 168 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~ 168 (765)
.....+..+......|++.+|...|..++...|.+.++...++.|+...|+.+.|...+...-....+.. .........
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3344566677888888999999999999888888888888889999999998888888776432222111 111111122
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHH
Q 004249 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE--NIEALKMGAKLYQKSGQIESS 246 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A 246 (765)
+.+.....+.. .+++.+..+|++.++.+.++..+...|+.+.|.+.+-..++.+.. +..+...+..++...|.-+.+
T Consensus 213 l~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 213 LEQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 33333333222 334455668888888888888888888888888888877776543 344555555555555544333
Q ss_pred HHHH
Q 004249 247 VDIL 250 (765)
Q Consensus 247 ~~~~ 250 (765)
...+
T Consensus 292 ~~~~ 295 (304)
T COG3118 292 VLAY 295 (304)
T ss_pred HHHH
Confidence 3333
No 229
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.97 E-value=0.00017 Score=70.75 Aligned_cols=134 Identities=11% Similarity=0.132 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE-LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK 239 (765)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 239 (765)
+|..+.....+.+..+.|..+|.++.+..+-...+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566666777777778888888888886555567778888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 004249 240 SGQIESSVDILEDYLKGHPTEA-DFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY 294 (765)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 294 (765)
.|+.+.|..+|++++..-|... .-.+|......-...|+.+....+.+++.+.++
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 8888888888888887766655 444777888888888888888888888887743
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.95 E-value=0.00048 Score=69.20 Aligned_cols=192 Identities=11% Similarity=0.090 Sum_probs=95.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHH
Q 004249 201 SLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD 280 (765)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 280 (765)
.-..+..+...-++.-++|++++|+.+.++..|+.- ...-..+|..+++++++....... ........|..-
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg------~s~~~~~~g~~~ 247 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG------KSQFLQHHGHFW 247 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc------hhhhhhcccchh
Confidence 333445556666666666666666666666555432 223345566666665554322111 000000001000
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCC-ChHHHHHHHHHHHHccccHHHHHHHH
Q 004249 281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVS-DHAESINEIADLFKNRELYSTALKYY 359 (765)
Q Consensus 281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~ 359 (765)
+ ... ..+......+...+++|..+.|+.++|++.++.+++..+. ++..++.++..+++..+.|.++...+
T Consensus 248 e-------~~~--~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 248 E-------AWH--RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred h-------hhh--ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 000 0011122344455666666666666666666666655433 24456666666666666666666666
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHH-------------hcc---HHHHHHHHHHHHHHcCCCHHHHH
Q 004249 360 HMLEANAGVHNDGCLHLKIAECSLA-------------LKE---REKSIIYFYKALQILEDNIDARL 410 (765)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~-------------~g~---~~~A~~~~~~al~~~p~~~~~~~ 410 (765)
.+.-++. -|..+...+..|.+-.+ .|- -..|++.+.++++.+|..+....
T Consensus 319 ~kYdDi~-lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 319 AKYDDIS-LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHhcccc-CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 6644332 34444444433332211 110 23467788888888888765443
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.95 E-value=2.1e-05 Score=52.02 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
++..+|.+|...|++++|+..|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4444455555555555555555555555555554444444
No 232
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.95 E-value=2e-05 Score=52.08 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004249 373 CLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLAS 414 (765)
Q Consensus 373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 414 (765)
.++..+|.+|...|++++|+..|+++++.+|++++++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567788888888888888888888888888888888887765
No 233
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.95 E-value=1e-05 Score=50.04 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=29.6
Q ss_pred hHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249 682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQK 713 (765)
Q Consensus 682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~ 713 (765)
.+++++|.+|..+|++++|+.+|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 68999999999999999999999999999985
No 234
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.91 E-value=0.031 Score=55.58 Aligned_cols=473 Identities=10% Similarity=0.029 Sum_probs=231.1
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 004249 114 LHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF 193 (765)
Q Consensus 114 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 193 (765)
+++-++.+|++...|+.|...+..+|.+++-.+.+++...-.|-.+.+|......-...+++......|.+++...- +.
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~l 109 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NL 109 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cH
Confidence 34456788999999999999999999999999999999988888888887766555667788888888888876432 34
Q ss_pred HHHHHHHHHHHHhC-----C----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHh
Q 004249 194 KLKFHLASLYVELG-----N----FQRAADVYRQMVQLCPENIEALKMGAKLYQ---------KSGQIESSVDILEDYLK 255 (765)
Q Consensus 194 ~~~~~la~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~~~ 255 (765)
+.|...-..-.+.+ + .-+|.+..-.+.-..|.....|...+..+. .+.+.+.-...|.+++.
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 44443332222222 1 223333333333345666666666555443 23344555566666665
Q ss_pred cCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHH-----hhccc
Q 004249 256 GHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-----AIHWE 330 (765)
Q Consensus 256 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-----~~~~~ 330 (765)
.--++ +-.++..-.+++.-+.-+. +.+..+...|....+. ..+....+....+.... .+-+.
T Consensus 190 tP~~n--------leklW~dy~~fE~e~N~~T-arKfvge~sp~ym~ar----~~yqe~~nlt~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 190 TPMGN--------LEKLWKDYENFELELNKIT-ARKFVGETSPIYMSAR----QRYQEIQNLTRGLSVKNPINLRTANKA 256 (660)
T ss_pred Ccccc--------HHHHHHHHHHHHHHHHHHH-HHHHhcccCHHHHHHH----HHHHHHHHHhccccccCchhhhhhccc
Confidence 32222 2222211112221111110 0000000001000000 00111111111110000 00000
Q ss_pred CCCChHHHHHHHHHHHHc------cccHHHHHH-HHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcC
Q 004249 331 NVSDHAESINEIADLFKN------RELYSTALK-YYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILE 403 (765)
Q Consensus 331 ~~~~~~~~~~~la~~~~~------~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 403 (765)
. .....-|.+....-.. .+-..+-+. .+++++.. -+-.+++|+.........++-+.|+...++++...|
T Consensus 257 ~-r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp 333 (660)
T COG5107 257 A-RTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP 333 (660)
T ss_pred c-ccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC
Confidence 0 0000012222221111 111222111 23445544 566677777777777777777777777766665544
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHh---cchhHHHHHhhHHHHh
Q 004249 404 DNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA---KGMIEGFVDMLLPLVC 480 (765)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~ 480 (765)
. ..+.++..|....+-++...+|+++...-.. .+..+..-.. .|+++...+.+.+-..
T Consensus 334 s---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r----------------~ys~~~s~~~s~~D~N~e~~~Ell~kr~~ 394 (660)
T COG5107 334 S---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR----------------KYSMGESESASKVDNNFEYSKELLLKRIN 394 (660)
T ss_pred c---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH----------------HHhhhhhhhhccccCCccccHHHHHHHHh
Confidence 4 5666777776666666665555544321000 0000000000 1112111111111110
Q ss_pred hhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHH
Q 004249 481 ESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFM 560 (765)
Q Consensus 481 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 560 (765)
.-.-++.-+-....+..-.+.|..+|.++.+..-. .. ...++.... -++..|++.-|...|.-.
T Consensus 395 ------------k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~--~h-~vyi~~A~~-E~~~~~d~~ta~~ifelG 458 (660)
T COG5107 395 ------------KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV--GH-HVYIYCAFI-EYYATGDRATAYNIFELG 458 (660)
T ss_pred ------------hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC--Cc-ceeeeHHHH-HHHhcCCcchHHHHHHHH
Confidence 00111222222233445567788888887764411 11 111222222 456689999999999999
Q ss_pred HHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC--CCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChH
Q 004249 561 VKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDF--VPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPL 638 (765)
Q Consensus 561 l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 638 (765)
+..+|+++..-+.|...+...++. +.+...+.+.+.+-... -..+...-..-..-|+...++..=++.....|...+
T Consensus 459 l~~f~d~~~y~~kyl~fLi~inde-~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 459 LLKFPDSTLYKEKYLLFLIRINDE-ENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHhCCCchHHHHHHHHHHHHhCcH-HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 999999988888777777666664 35555555444332111 111111111123346666666666777777776544
Q ss_pred H
Q 004249 639 I 639 (765)
Q Consensus 639 ~ 639 (765)
+
T Consensus 538 ~ 538 (660)
T COG5107 538 I 538 (660)
T ss_pred H
Confidence 3
No 235
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.91 E-value=0.00027 Score=69.38 Aligned_cols=131 Identities=13% Similarity=0.079 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249 129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE-QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG 207 (765)
Q Consensus 129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 207 (765)
..+.....+.+..+.|...|.++.+..+....+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+...|
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~ 84 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC
Confidence 3333334444444445555555443333334444444444333 233333555555555544544444444444444455
Q ss_pred CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249 208 NFQRAADVYRQMVQLCPENI---EALKMGAKLYQKSGQIESSVDILEDYLKGHPT 259 (765)
Q Consensus 208 ~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 259 (765)
+.+.|..+|++++..-|... .+|......-...|+.+....+.+++.+..|.
T Consensus 85 d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 85 DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 55555555555544433322 23444444444445555555555555444444
No 236
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.90 E-value=0.033 Score=55.54 Aligned_cols=443 Identities=11% Similarity=0.006 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELP-----NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
.+..+|..+-.++++.+|..+|.++.+...+.+ +++..+....+-+++.+.-...+...-+..|..+......|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 445778999999999999999999988766554 333344444445577777777776666777888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC--CH-------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C----CCH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADPN--DF-------------KLKFHLASLYVELGNFQRAADVYRQMVQLC-P----ENI 227 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~--~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p----~~~ 227 (765)
..++.+.+.+|++.+......-.. .+ ..-...+.++...|.+.++...+.+.+..- | -+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 999999999999998776654111 11 112346788899999999999999987642 2 233
Q ss_pred HHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc-------------------------
Q 004249 228 EALK----MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA------------------------- 278 (765)
Q Consensus 228 ~~~~----~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~------------------------- 278 (765)
+.+. .+|+.|+ -++.+....+.-+ -++.++..|.+.=.
T Consensus 168 d~yd~~vlmlsrSYf------------LEl~e~~s~dl~p-dyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYF------------LELKESMSSDLYP-DYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHHHHHhHHHH------------HHHHHhcccccCh-HHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 3333 3344333 2221111111111 12222222221110
Q ss_pred --HHHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC----CCChHHHHHHHHHHHHccc
Q 004249 279 --YDRVLKHIELVDLVYYSG--KELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN----VSDHAESINEIADLFKNRE 350 (765)
Q Consensus 279 --~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g 350 (765)
+.+-+..+-+++..+... +|...-+...+..- -..+.+++....+.+.... ...-...+..+-....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~--f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQ--FMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHH--HhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111122221110 11111111111111 1113444444433332110 0011122222333446778
Q ss_pred cHHHHHHHHHHHHhccCCCCCHHHHHHHH-------HHHH-Hhc---cHHHHHHHHHHHHHHcCCCH---HHHHHHHHHH
Q 004249 351 LYSTALKYYHMLEANAGVHNDGCLHLKIA-------ECSL-ALK---EREKSIIYFYKALQILEDNI---DARLTLASLL 416 (765)
Q Consensus 351 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la-------~~~~-~~g---~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~ 416 (765)
+...|..++.-+..+ +|+.. ....+. .+.. .-. +...=+..++.+-..+-+.. .-...-|.-+
T Consensus 313 ~T~~a~q~l~lL~~l--dp~~s-vs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 313 QTEEAKQYLALLKIL--DPRIS-VSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHL 389 (549)
T ss_pred hHHHHHHHHHHHHhc--CCcch-hhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 888888888877666 67654 111111 1111 000 11111223333332222221 3344456667
Q ss_pred HHcCC-HHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHH---HHhhhcccccccChh
Q 004249 417 LEDAK-DEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLP---LVCESSHQEETFNHE 492 (765)
Q Consensus 417 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~---~~~~~~~l~~~~~~~ 492 (765)
.+.|. -++|+++++.++...+... .-..+...+..-.+++---..++..+.. .+ ...++.++....
T Consensus 390 W~~g~~dekalnLLk~il~ft~yD~---------ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi-~e~gl~~i~i~e 459 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNYDI---------ECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI-TEVGLTPITISE 459 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccccH---------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCCCcccccH
Confidence 77777 7889999988877655540 0000111111111111111111111111 11 111233333333
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhH
Q 004249 493 EHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWN 572 (765)
Q Consensus 493 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 572 (765)
....-...=|.-++..|++.++.-+-.-..++. | .+...+.+|. |.+...+|.+|..++..+ |.+...++
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~ia----P-S~~~~RLlGl-~l~e~k~Y~eA~~~l~~L----P~n~~~~d 529 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA----P-SPQAYRLLGL-CLMENKRYQEAWEYLQKL----PPNERMRD 529 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----C-cHHHHHHHHH-HHHHHhhHHHHHHHHHhC----CCchhhHH
Confidence 333344444555788999999998888777777 4 5556555555 999999999999987654 55655555
Q ss_pred H
Q 004249 573 R 573 (765)
Q Consensus 573 ~ 573 (765)
.
T Consensus 530 s 530 (549)
T PF07079_consen 530 S 530 (549)
T ss_pred H
Confidence 3
No 237
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.87 E-value=1.6e-05 Score=48.69 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.0
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHH
Q 004249 703 YYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQ 757 (765)
Q Consensus 703 ~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~ 757 (765)
.|+|+|+++|+| +++++|||.+|...|+++.|++
T Consensus 1 ~y~kAie~~P~n---------------------~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN---------------------AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC---------------------HHHHHHHHHHHHHCcCHHhhcC
Confidence 389999999976 7999999999999999999974
No 238
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4.6e-05 Score=68.25 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=73.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249 165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244 (765)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 244 (765)
-|..++...+|..|+.+|.+++.++|..+..+.+.+.++++..+++.+....++++++.|+....++.+|........++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 45556666678888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhc
Q 004249 245 SSVDILEDYLKG 256 (765)
Q Consensus 245 ~A~~~~~~~~~~ 256 (765)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888887554
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00037 Score=65.76 Aligned_cols=118 Identities=11% Similarity=-0.020 Sum_probs=55.1
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH---HHHHHHHHHHHHhCCH
Q 004249 134 VHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA-DPNDF---KLKFHLASLYVELGNF 209 (765)
Q Consensus 134 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~---~~~~~la~~~~~~g~~ 209 (765)
+....|++.+|...+++.++-.|.+.-++..--.+++..|+...-...+++++.. +|+.| -+.-.++..+...|-|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3344445555555555555544555444444444444455555444455444443 33321 2222333344444555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE 251 (765)
Q Consensus 210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (765)
++|.+..+++++++|.+..+...++.++...|++.++.+.+.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 555555555555555554444445555555555554444443
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.84 E-value=0.045 Score=57.37 Aligned_cols=237 Identities=15% Similarity=0.159 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 004249 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF---------KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228 (765)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 228 (765)
++..|..+|......-.++-|...|-+.-.. |.-. .--...+.+-.--|++++|.+.|-.+-+.
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr------ 763 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR------ 763 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh------
Confidence 6677777777776666666666666554321 1110 00123344445557888888877655321
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004249 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAG 308 (765)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (765)
-....++.+.|+|-...++++..-.-..+...-.++..+|..+..+..|++|.++|.+.-.. .+..
T Consensus 764 --DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------------e~~~ 829 (1189)
T KOG2041|consen 764 --DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------------ENQI 829 (1189)
T ss_pred --hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HhHH
Confidence 12234566777777776666553332222222346778888888888888888888776443 2445
Q ss_pred HHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccH
Q 004249 309 ICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKER 388 (765)
Q Consensus 309 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 388 (765)
.|++...++++-..+...+ |++...+-.+|..+...|.-++|.+.|-+.- .|..+ ......++++
T Consensus 830 ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pkaA------v~tCv~LnQW 894 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPKAA------VHTCVELNQW 894 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcHHH------HHHHHHHHHH
Confidence 6667777776655555544 6667777888888888888888888774321 23221 1334556667
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCC
Q 004249 389 EKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPP 432 (765)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (765)
.+|.+.-++-. -|.-.......+.-+...++.-+|++..+++
T Consensus 895 ~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 895 GEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 77766554421 1222222222333344455556666555554
No 241
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.83 E-value=0.0087 Score=65.04 Aligned_cols=278 Identities=15% Similarity=0.085 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHc-----CCHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHHcC--
Q 004249 106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDAL-----GNTAKAMGCYWLAACY-----KQKDSSLWKLIFPWLIEQG-- 173 (765)
Q Consensus 106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~g-- 173 (765)
....|...++.+... .+..+...+|.||..- .+.+.|+.+|..+... .-..+.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356778888777554 4677888888888754 5889999999988761 1124557778888888743
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 004249 174 ---DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG---NFQRAADVYRQMVQLCPENIEALKMGAKLYQK----SGQI 243 (765)
Q Consensus 174 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~ 243 (765)
+...|..+|.++.... ++.+.+.+|.++.... ++..|..+|..+... .+..+.+.++.+|.. ..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 6677899988887754 5677788888887655 578899999888764 567778888888764 3577
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCChh
Q 004249 244 ESSVDILEDYLKGHPTEADFGVIDLLASMLVQM-NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ----LGNTD 318 (765)
Q Consensus 244 ~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 318 (765)
..|..++.++.+..+-. +...++..+... +.++.+...+......-.................... ..+..
T Consensus 381 ~~A~~~~k~aA~~g~~~----A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPS----AAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHccChh----hHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchh
Confidence 88999999988876322 233444433322 6666666666555444100000000000000000000 11233
Q ss_pred HHHHHHHhhcccCCCChHHHHHHHHHHHHcc----ccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh---ccHHHH
Q 004249 319 KAEILLTAIHWENVSDHAESINEIADLFKNR----ELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL---KEREKS 391 (765)
Q Consensus 319 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A 391 (765)
.+...+.++. ...++.+...+|.+|..- .++..|...|..+... . +...+++|.++..- .....|
T Consensus 457 ~~~~~~~~a~---~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~--~---~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 457 RAFSLYSRAA---AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ--G---AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred HHHHHHHHHH---hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh--h---hHHHhhhhhHHhcCcCcchhHHH
Confidence 3334444332 133455555555555332 2355666666555543 2 55555565555431 114555
Q ss_pred HHHHHHHHHH
Q 004249 392 IIYFYKALQI 401 (765)
Q Consensus 392 ~~~~~~al~~ 401 (765)
..+|.++.+.
T Consensus 529 ~~~~~~~~~~ 538 (552)
T KOG1550|consen 529 KRYYDQASEE 538 (552)
T ss_pred HHHHHHHHhc
Confidence 5555555544
No 242
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.085 Score=57.98 Aligned_cols=328 Identities=13% Similarity=0.097 Sum_probs=203.7
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249 123 ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQ---KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL 199 (765)
Q Consensus 123 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 199 (765)
.+|+.-..-..+++..+-+.+-++.+++.+-.+. .+......|..... .-+.....++.++.-..+.. .+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCch------hH
Confidence 3455555566677777778888888887763321 11122222222222 23444555555554333221 25
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccH
Q 004249 200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY 279 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 279 (765)
|.+....+-|++|...|++- .-+..+.. .+....+..+.|.++.+++ +.+. +|..+|.+..+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf----~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~--vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF----DMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPA--VWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh----cccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChH--HHHHHHHHHHhcCch
Confidence 66777778889998888764 22333322 2234567788888877765 2223 799999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249 280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYY 359 (765)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 359 (765)
.+|++.|-++ +++..+.....+..+.|.+++-++++..+.+.... +.+-..+...|.+.++..+-.+.+
T Consensus 1121 ~dAieSyika---------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E--~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA---------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE--PYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHHhc---------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC--ccchHHHHHHHHHhchHHHHHHHh
Confidence 9999988654 33455667777788999999999999887654322 334445556677777776655544
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249 360 HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY 439 (765)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (765)
. .|+.+.+ -..|.-++..|.|+.|.-.|..+ .-|..|+..+...|+++.|...-+++.....-.
T Consensus 1190 ~-------gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1190 A-------GPNVANI-QQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred c-------CCCchhH-HHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 1 5655443 45788888899999998877643 446778999999999999998888776521100
Q ss_pred --cCc--ccchhh---------hhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHH
Q 004249 440 --VNS--DKTHAW---------WLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLA 506 (765)
Q Consensus 440 --~~~--~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 506 (765)
-+. +...+. .....-+-.+...|...|-+++-+..+...+. ....+...+..+|..|.
T Consensus 1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG---------LERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG---------LERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc---------hhHHHHHHHHHHHHHHH
Confidence 000 000000 00112233455677777877777766665553 44456666777776665
Q ss_pred h
Q 004249 507 S 507 (765)
Q Consensus 507 ~ 507 (765)
+
T Consensus 1325 k 1325 (1666)
T KOG0985|consen 1325 K 1325 (1666)
T ss_pred h
Confidence 4
No 243
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.82 E-value=0.014 Score=60.37 Aligned_cols=292 Identities=16% Similarity=0.088 Sum_probs=159.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------CCCHHHHHHHHHH
Q 004249 98 ASLHYALGRYEEAISVLHEVIRLEE-ELPNSYHILGLVHDALGNTAKAMGCYWLAACYK--------QKDSSLWKLIFPW 168 (765)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~ 168 (765)
+.++.+.|+++. +.+.+...+ ..+...+..+......|+++++...+.++...- +......+..-..
T Consensus 5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 466788899988 333333333 234666667777778899999888888776531 1111111111111
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhCCHH--HHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Q 004249 169 LIEQGDTTWAMSCLSEAVKADPNDF----KLKFHLASLYVELGNFQ--RAADVYRQMVQL----CPENIEALKMGAKLYQ 238 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~--~A~~~~~~al~~----~p~~~~~~~~la~~~~ 238 (765)
+......+++..+....... +... ..|...-... ..+++ +-+-.++..+-. .......+...+.+..
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 22233334444433221110 0000 1111111110 11111 111122222211 3345677899999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HhcCCCCccHHHHHHHHHHHHhcC
Q 004249 239 KSGQIESSVDILEDYLKGHPTEA--DFGVIDLLASMLVQMNAYDRVLKHIELVDL-VYYSGKELLLALKIKAGICHIQLG 315 (765)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 315 (765)
+.|+++.|...+.++....+... .+.+....+.++...|+..+|+..++..+. ................+...
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---- 233 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE---- 233 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc----
Confidence 99999999999999887653221 233666889999999999999999998887 32211111111111111000
Q ss_pred ChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc------ccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcc--
Q 004249 316 NTDKAEILLTAIHWENVSDHAESINEIADLFKNR------ELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKE-- 387 (765)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-- 387 (765)
..+..... ............++..+|...... +..++++..|..+... .|....+|+.+|..+...=.
T Consensus 234 ~~~~~~~~--~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~~~k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 234 SLEVISST--NLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--DPSWEKAWHSWALFNDKLLESD 309 (352)
T ss_pred cccccccc--chhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--ChhHHHHHHHHHHHHHHHHHhh
Confidence 00000000 000001122245677777776666 8899999999999999 89888999988887755422
Q ss_pred ---------------HHHHHHHHHHHHHHcCC
Q 004249 388 ---------------REKSIIYFYKALQILED 404 (765)
Q Consensus 388 ---------------~~~A~~~~~~al~~~p~ 404 (765)
...|+..|-+++...+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 310 PREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 23466677777776665
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.79 E-value=3.2e-05 Score=47.90 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=30.1
Q ss_pred chHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249 681 QEALYNIARAYHHVGLVSLAASYYEKVLAMYQK 713 (765)
Q Consensus 681 ~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~ 713 (765)
+++++++|.+|..+|++++|+.+|+++++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 368999999999999999999999999999985
No 245
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.79 E-value=3.9e-05 Score=76.49 Aligned_cols=108 Identities=14% Similarity=0.061 Sum_probs=87.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249 96 GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT 175 (765)
Q Consensus 96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 175 (765)
.+|..++..++|+.|+.+|.++++++|+++..+-..+.++.+.+++..|+..+.++++.+|....+|+..|.+....+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 45677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249 176 TWAMSCLSEAVKADPNDFKLKFHLASLY 203 (765)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~la~~~ 203 (765)
.+|...|+......|+++.+...+-.+-
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 8888888888888888887766655543
No 246
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.77 E-value=0.11 Score=57.69 Aligned_cols=289 Identities=12% Similarity=0.008 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhccCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC--CCH----HHHHHHHHHHHHhCCH
Q 004249 141 TAKAMGCYWLAACYKQK----DSSLWKLIFPWLI-EQGDTTWAMSCLSEAVKADP--NDF----KLKFHLASLYVELGNF 209 (765)
Q Consensus 141 ~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g~~ 209 (765)
...|+.+++-+++..+- ...+.+.+|.++. ...+++.|..++++++.+.. +.. .+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35678888888742221 2356778999877 78999999999999987753 222 3456778888888877
Q ss_pred HHHHHHHHHHHHhCCC---CHH-HHHHH--HHHHHHcCCHHHHHHHHHHHHhcCC--CCCCHHHHH--HHHHHHHHhccH
Q 004249 210 QRAADVYRQMVQLCPE---NIE-ALKMG--AKLYQKSGQIESSVDILEDYLKGHP--TEADFGVID--LLASMLVQMNAY 279 (765)
Q Consensus 210 ~~A~~~~~~al~~~p~---~~~-~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~--~l~~~~~~~~~~ 279 (765)
. |...+++.++.... ... ..+.+ ...+...+++..|++.++....... .++...++. ..+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 99999999886554 222 12222 3333344899999999999887653 443322222 345566677888
Q ss_pred HHHHHHHHHHHHHhcC------CCCccHHHHHHH--HHHHHhcCChhHHHHHHHhh---cccC--CC------C------
Q 004249 280 DRVLKHIELVDLVYYS------GKELLLALKIKA--GICHIQLGNTDKAEILLTAI---HWEN--VS------D------ 334 (765)
Q Consensus 280 ~~A~~~~~~~~~~~~~------~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~---~~~~--~~------~------ 334 (765)
+++++.++++...... ..+....++..+ ..+.+..|+++.+...++.+ +... .+ +
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 8899998888554221 111223333333 23567778877777665553 1100 00 0
Q ss_pred ----------h-H-------------HHHHHHHHHHHccccHHHHHHHHHHHHhccC--------CCCC-----------
Q 004249 335 ----------H-A-------------ESINEIADLFKNRELYSTALKYYHMLEANAG--------VHND----------- 371 (765)
Q Consensus 335 ----------~-~-------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~----------- 371 (765)
. + -++..-|...+..|..+.|.++++++++.-. .+..
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 0 0 1233334455666767688777777764410 1110
Q ss_pred -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHc---CC------CHHHHHHHHHHHHHcCCHHHHHHhcC
Q 004249 372 -----GCLHLKIAECSLALKEREKSIIYFYKALQIL---ED------NIDARLTLASLLLEDAKDEEAISLLT 430 (765)
Q Consensus 372 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (765)
..+.+..+.+..-.+++..|....+.+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 1233456777788899999999888877653 22 35677788999999999999999998
No 247
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.72 E-value=0.011 Score=64.18 Aligned_cols=277 Identities=14% Similarity=0.052 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhC---
Q 004249 141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ-----GDTTWAMSCLSEAVKA-----DPNDFKLKFHLASLYVELG--- 207 (765)
Q Consensus 141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 207 (765)
...|..+++.+... .+..+...+|.++..- .+.+.|+.+|+.+... .-..+.+...+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888888765 4777788888887654 6899999999999771 1225567888999998853
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh----cc
Q 004249 208 --NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG---QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM----NA 278 (765)
Q Consensus 208 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~----~~ 278 (765)
++..|+.+|.++-.. .++.+.+.+|.++.... ++..|..+|..+....-. . +.+.++.+|..- .+
T Consensus 306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~--~--A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI--L--AIYRLALCYELGLGVERN 379 (552)
T ss_pred cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh--H--HHHHHHHHHHhCCCcCCC
Confidence 778899999999876 45667888999888765 678999999998875432 2 566788777643 57
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc-CChhHHHHHHHhhcccC--CC-ChHHHHHHHHHHHHc----cc
Q 004249 279 YDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL-GNTDKAEILLTAIHWEN--VS-DHAESINEIADLFKN----RE 350 (765)
Q Consensus 279 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~--~~-~~~~~~~~la~~~~~----~g 350 (765)
...|..+++++... . .+.+...++.++... +.++.+...+....... .+ .+...+......... ..
T Consensus 380 ~~~A~~~~k~aA~~----g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 380 LELAFAYYKKAAEK----G--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred HHHHHHHHHHHHHc----c--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccccc
Confidence 89999999999988 2 344444444433322 77777666555442211 01 111111111111111 22
Q ss_pred cHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-C--CHH
Q 004249 351 LYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL----KEREKSIIYFYKALQILEDNIDARLTLASLLLED-A--KDE 423 (765)
Q Consensus 351 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g--~~~ 423 (765)
+...+...+.++. ...++.+...+|.+|..- .+++.|...|.++.... ....+.+|.++..- | ...
T Consensus 454 ~~~~~~~~~~~a~----~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~ 526 (552)
T KOG1550|consen 454 TLERAFSLYSRAA----AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLH 526 (552)
T ss_pred chhHHHHHHHHHH----hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhH
Confidence 5566666776665 456788899999998775 34999999999998876 88889999998652 2 268
Q ss_pred HHHHhcCCCCCcccc
Q 004249 424 EAISLLTPPMSLENK 438 (765)
Q Consensus 424 ~A~~~~~~~~~~~~~ 438 (765)
.|.+++.++...+..
T Consensus 527 ~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 527 LAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHHhcCch
Confidence 888888877765444
No 248
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00052 Score=61.86 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRL--------EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW 162 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 162 (765)
+..+..+|+.++..|+|.+|...|+.++.. .|..++. ++++......+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW------------------------~eLdk~~tpLl 233 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW------------------------LELDKMITPLL 233 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH------------------------HHHHHhhhHHH
Confidence 455678899999999999999999888643 2322211 11122233455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229 (765)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 229 (765)
.++++|+...|+|-++++....++..+|.+..+++..|.+....-+..+|...|.++++++|.-..+
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 6667777777777777777777777777777777777777777777777777777777777665443
No 249
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.69 E-value=0.018 Score=62.52 Aligned_cols=287 Identities=13% Similarity=0.023 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHH
Q 004249 265 VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIAD 344 (765)
Q Consensus 265 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 344 (765)
.+..-+..+...|...+|+...-.+-+- ..........+.-.+..++..--....+.+-....-.+|......++
T Consensus 349 lH~~Aa~w~~~~g~~~eAI~hAlaA~d~-----~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW 423 (894)
T COG2909 349 LHRAAAEWFAEHGLPSEAIDHALAAGDP-----EMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAW 423 (894)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHhCCCH-----HHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHH
Confidence 4556666777777777777765433211 11222233334444455554444444444321111334667777788
Q ss_pred HHHccccHHHHHHHHHHHHhccCCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH-----HHHHHH
Q 004249 345 LFKNRELYSTALKYYHMLEANAGVHND-------GCLHLKIAECSLALKEREKSIIYFYKALQILEDNI-----DARLTL 412 (765)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l 412 (765)
......++.+|..++.++...-..|+. ...-...|.+....|++++|.+..+.++..-|.+. .+...+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 888899999999999887755212222 23445567888899999999999999999877654 456668
Q ss_pred HHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHH--HhhHHHHhhhcccccccC
Q 004249 413 ASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFV--DMLLPLVCESSHQEETFN 490 (765)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~--~~~~~~~~~~~~l~~~~~ 490 (765)
+.+..-.|++++|..+..++.+..... ..++....+....+.++..+|+...+. ..+...-....+ .
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~------~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~-----q 572 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQH------DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE-----Q 572 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-----h
Confidence 888899999999999998877653322 233444566667788888899433332 222222111100 2
Q ss_pred hhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCc--hHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCc
Q 004249 491 HEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPV--EKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHR 567 (765)
Q Consensus 491 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 567 (765)
.|-+.-.+...+.++...-+++.+..-..+.+++.....|. ........++.+.+..|+.++|......+....-++
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 22222233444444444444777777777777766443232 233333456669999999999999999887654433
No 250
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.68 E-value=5.5e-05 Score=46.31 Aligned_cols=32 Identities=38% Similarity=0.494 Sum_probs=25.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249 395 FYKALQILEDNIDARLTLASLLLEDAKDEEAI 426 (765)
Q Consensus 395 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 426 (765)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67778888888888888888888888887775
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.65 E-value=0.025 Score=56.50 Aligned_cols=79 Identities=13% Similarity=-0.042 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhcCCCCHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACY----KQKDSSLWKLIFPWLIE---QGDTTWAMSCLSEA-VKADPNDFKLKF 197 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~~~ 197 (765)
++...+-.+|....+|+.-++..+..-.+ -++.+.+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.+.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34444445555555565555555554443 23344444555555555 55566666665553 233445555555
Q ss_pred HHHHHHH
Q 004249 198 HLASLYV 204 (765)
Q Consensus 198 ~la~~~~ 204 (765)
.+|.+|.
T Consensus 222 L~GRIyK 228 (374)
T PF13281_consen 222 LLGRIYK 228 (374)
T ss_pred HHHHHHH
Confidence 5555554
No 252
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.65 E-value=0.15 Score=55.73 Aligned_cols=304 Identities=14% Similarity=0.047 Sum_probs=181.7
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPWLIEQGDTTWAMSCLSEAVKADP-----NDFKLKFH 198 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 198 (765)
.+.+..-+.-+...|...+|+...-.+- +|... ......+.-....++.. .+..++..-| .+|.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~--d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG--DPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC--CHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHHHH
Confidence 4666777777778888888887765442 23222 22222344444444433 2333333333 34566677
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---HHHH
Q 004249 199 LASLYVELGNFQRAADVYRQMVQLCPE--N-------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD---FGVI 266 (765)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~ 266 (765)
.+.......++.+|..++.++...-|. . ....-..|.+....|++++|+.+.+.++..-|.+.. ...+
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 788888899999999999888765443 1 234455677888899999999999999998777643 3356
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHH--HHHHHHHHhcCChhHH--HHHHHhhccc---CCCChHHHH
Q 004249 267 DLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK--IKAGICHIQLGNTDKA--EILLTAIHWE---NVSDHAESI 339 (765)
Q Consensus 267 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A--~~~~~~~~~~---~~~~~~~~~ 339 (765)
..+|.+..-.|++++|..+..++.+.....+.....++ ...+.++...|+...+ ...+...-.. ..+.+.-..
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 68899999999999999999998877443333333333 3446677888843333 2333322111 112222222
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHhcc----CCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC-H----HH-
Q 004249 340 NEIADLFKNRELYSTALKYYHMLEANA----GVHNDGC-LHLKIAECSLALKEREKSIIYFYKALQILEDN-I----DA- 408 (765)
Q Consensus 340 ~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~- 408 (765)
...+.++...-+++.+..-....++.. ..|.... ..+.++.++...|++++|...+.....+.... . .+
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 222222222222454444444443331 1222222 23478999999999999999999887764332 1 11
Q ss_pred -HHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249 409 -RLTLASLLLEDAKDEEAISLLTPPMS 434 (765)
Q Consensus 409 -~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (765)
..........+|+..+|...+.+...
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 11122233457899988888776544
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0034 Score=59.13 Aligned_cols=151 Identities=13% Similarity=0.016 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF-KLKFHLASLYV 204 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 204 (765)
+.-+..+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....... .........+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34455566777889999999999999999999988899999999999999888888765422221111 11111123333
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 277 (765)
+.....+. ..+++.+..+|++..+-+.+|..+...|+.+.|.+.+-..++.+....+..+-..+..++...|
T Consensus 215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333322 3345556778888888899999999999999999888888887666554334445555554444
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.63 E-value=0.052 Score=53.43 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004249 194 KLKFHLASLYVELGNFQ---RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHP 258 (765)
Q Consensus 194 ~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 258 (765)
.++..++.++...+.++ +|...++.+....|+.+..+...-.++.+.++.+.+.+.+.+++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 34566666666665543 344455555556666666665555555556777777777777776543
No 255
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.023 Score=52.28 Aligned_cols=173 Identities=12% Similarity=0.106 Sum_probs=140.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH-HH
Q 004249 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG-NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT-WA 178 (765)
Q Consensus 101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~-~A 178 (765)
+.+...-..|+.+-..++..+|.+-.+|...-.++..++ +..+-+.++...++-+|++-.+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 345567789999999999999999988888777776654 6788889999999999999999998888888888888 88
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHH
Q 004249 179 MSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK-SG-----QIESSVDILED 252 (765)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~ 252 (765)
+++.+.++..+..+..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~ 212 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD 212 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999887776666543322222 12 23445667778
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHH
Q 004249 253 YLKGHPTEADFGVIDLLASMLVQ 275 (765)
Q Consensus 253 ~~~~~p~~~~~~~~~~l~~~~~~ 275 (765)
.+...|++.. +|+.|.-++..
T Consensus 213 ~I~~vP~NeS--aWnYL~G~l~~ 233 (318)
T KOG0530|consen 213 KILLVPNNES--AWNYLKGLLEL 233 (318)
T ss_pred HHHhCCCCcc--HHHHHHHHHHh
Confidence 8899999988 78888777765
No 256
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.59 E-value=0.0001 Score=45.50 Aligned_cols=32 Identities=34% Similarity=0.623 Sum_probs=30.4
Q ss_pred hHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249 682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQK 713 (765)
Q Consensus 682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~ 713 (765)
++++.+|.+|.++|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68999999999999999999999999999983
No 257
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.58 E-value=9.7e-05 Score=73.75 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=48.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249 132 GLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR 211 (765)
Q Consensus 132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 211 (765)
+...+.-+.++.|+..|.++++++|++...+...+.++...+++..|+.-+.++++.+|....+|+..|.+....+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 33344444444555555555555544444444444444444555555555555554444444444444444444445555
Q ss_pred HHHHHHHHHHhCCCCHHHHH
Q 004249 212 AADVYRQMVQLCPENIEALK 231 (765)
Q Consensus 212 A~~~~~~al~~~p~~~~~~~ 231 (765)
|...|+....+.|+++.+..
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHH
Confidence 55555544444444444433
No 258
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0017 Score=58.67 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
...+.+.++|+...|+|-++++....++...|.+..+++..|.+....=+..+|..-|.++++++|.-..
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 3578899999999999999999999999999999999999999999999999999999999999998654
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.48 E-value=0.0025 Score=67.43 Aligned_cols=117 Identities=16% Similarity=0.064 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 004249 104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD----SSLWKLIFPWLIEQGDTTWAM 179 (765)
Q Consensus 104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~~A~ 179 (765)
..+.+.|.+++.......|+..-.++..|.++...|+.++|+..|++++.....- .-.++.++.++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4566777777777777777777777777777777777777777777776432221 133455666666677777777
Q ss_pred HHHHHHHhcCCCCH-HHHHHHHHHHHHhCCH-------HHHHHHHHHHH
Q 004249 180 SCLSEAVKADPNDF-KLKFHLASLYVELGNF-------QRAADVYRQMV 220 (765)
Q Consensus 180 ~~~~~al~~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~al 220 (765)
.++.+..+.+.-.. -..+..|.++...|+. ++|...+.++-
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77766666544322 2334555566666666 55555555443
No 260
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.48 E-value=0.14 Score=51.56 Aligned_cols=126 Identities=17% Similarity=0.029 Sum_probs=91.0
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004249 136 DALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV 215 (765)
Q Consensus 136 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 215 (765)
...|+.-.|-.-...++...|.+|......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45577777777777788877888877777788888888888888777665554333444555566667778888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249 216 YRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA 261 (765)
Q Consensus 216 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 261 (765)
...++...-+++++....+.....+|-++++...+++.+.++|...
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 7777776666666666556666677778888888888888776543
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.47 E-value=0.13 Score=50.59 Aligned_cols=124 Identities=11% Similarity=0.010 Sum_probs=94.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhh-CCCc-------hHHHHHHHHHHHcC-CHHHHHHHHHHHhcc----CC---CC------
Q 004249 101 HYALGRYEEAISVLHEVIRLE-EELP-------NSYHILGLVHDALG-NTAKAMGCYWLAACY----KQ---KD------ 158 (765)
Q Consensus 101 ~~~~g~~~~A~~~~~~~l~~~-p~~~-------~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~----~p---~~------ 158 (765)
....|+++.|..++.++-... ..++ ..++..|......+ +++.|..+++++.+. .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999987655 2232 56788888888999 999999999999876 21 11
Q ss_pred -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249 159 -SSLWKLIFPWLIEQGDTT---WAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP 224 (765)
Q Consensus 159 -~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 224 (765)
..++..++.++...+.++ +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 135667899999888765 455555566566788888876666677778999999999999998655
No 262
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.43 E-value=0.023 Score=56.77 Aligned_cols=123 Identities=10% Similarity=0.062 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---hCCHHHHHHHHHH-HHHhCCCCHHH
Q 004249 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA----DPNDFKLKFHLASLYVE---LGNFQRAADVYRQ-MVQLCPENIEA 229 (765)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~ 229 (765)
+++....+-.+|....+|+.-+...+.+-.. -++.+.+.+..|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3456667777899999999999998887766 45567788899999998 9999999999999 55566778899
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHH
Q 004249 230 LKMGAKLYQKS---------GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVL 283 (765)
Q Consensus 230 ~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~ 283 (765)
+..+|.+|-.. ...++|+..|.++.+.+|+... -.+++.++...|...+..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~---GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS---GINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc---hHHHHHHHHHcCCcccch
Confidence 99999988632 3478999999999999976543 236676776666544433
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.42 E-value=0.0003 Score=43.36 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC
Q 004249 372 GCLHLKIAECSLALKEREKSIIYFYKALQILEDN 405 (765)
Q Consensus 372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 405 (765)
+.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888863
No 264
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.40 E-value=0.00045 Score=42.58 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC
Q 004249 372 GCLHLKIAECSLALKEREKSIIYFYKALQILEDN 405 (765)
Q Consensus 372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 405 (765)
+.+++.+|.++...|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4577888888888888888888888888888864
No 265
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.39 E-value=0.18 Score=50.37 Aligned_cols=69 Identities=4% Similarity=-0.115 Sum_probs=48.6
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004249 85 KKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAAC 153 (765)
Q Consensus 85 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 153 (765)
...|.++..++....-+-.+|.+++-.+.+++...-.|--+.+|...-..-...+++......|.+++.
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 345678888888888888899999999999998887777666665544444444555555555555443
No 266
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.0053 Score=53.84 Aligned_cols=118 Identities=20% Similarity=0.083 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE 171 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 171 (765)
..+...|......|+.+.++..+++++.......-.-..- ..-.......++.. ...+...++..+..
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~ 74 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLE 74 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 3445556667788899999999999887653221000000 00011111122211 22445566777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ 221 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 221 (765)
.|++++|+..+++++..+|.+..++..+..++...|+...|+..|++...
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88888888888888888888778888888888888888888877777644
No 267
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.34 E-value=0.00036 Score=42.70 Aligned_cols=32 Identities=31% Similarity=0.672 Sum_probs=30.3
Q ss_pred hHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249 682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQK 713 (765)
Q Consensus 682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~ 713 (765)
+++|++|++|...|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 57999999999999999999999999999984
No 268
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.32 E-value=0.0071 Score=64.05 Aligned_cols=120 Identities=14% Similarity=0.024 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc---CCCChHHHHHHHHHHHHccccHHH
Q 004249 278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE---NVSDHAESINEIADLFKNRELYST 354 (765)
Q Consensus 278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~ 354 (765)
..+.|.+.+...... .|...-..+..|.++...|+.++|++.|++++.. .+.-..-.++.++.++.-.++|++
T Consensus 248 ~~~~a~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 445555555555555 4445555555566666666666666666654421 111223456677777777777777
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHc
Q 004249 355 ALKYYHMLEANAGVHNDGCLHLKIAECSLALKER-------EKSIIYFYKALQIL 402 (765)
Q Consensus 355 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 402 (765)
|..+|.++.+.. .-......+..|.|+...|+. ++|...|.++-...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 777777777652 222334445667777777777 77777777776553
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.31 E-value=0.00035 Score=43.60 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=26.8
Q ss_pred HHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249 683 ALYNIARAYHHVGLVSLAASYYEKVLAMYQK 713 (765)
Q Consensus 683 ~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~ 713 (765)
++.+||.+|..+|++++|+.+|+++|.+.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999998877653
No 270
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.81 Score=55.86 Aligned_cols=405 Identities=13% Similarity=0.058 Sum_probs=230.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249 96 GDASLHYALGRYEEAISVLHEVIRLEEEL---PNS-YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE 171 (765)
Q Consensus 96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~-~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 171 (765)
..|.+-++.+.|.+|+-++++- ...+.. .+. ++.+-.+|...++++.-......-. .+|. ..........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-ADPS----LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-cCcc----HHHHHHHHHh
Confidence 4567788999999999999985 222211 133 4444448999999998777766411 1222 3344455778
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCHHHHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA-KLYQKSGQIESSVDIL 250 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~ 250 (765)
.|++..|..+|++++..+|+....+...-......|.+...+...+-.....++...-+..++ .+-.+.++++.-..+.
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999999999999998888888888888889999999888777666665555555444 3446788887766655
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHhc------CCCCccHHHHHHHHHHHHhcCChhHHHH
Q 004249 251 EDYLKGHPTEADFGVIDLLASMLVQMNAYDRVL--KHIELVDLVYY------SGKELLLALKIKAGICHIQLGNTDKAEI 322 (765)
Q Consensus 251 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~--~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 322 (765)
. +.+...+.+ ..+|.+..+..+-+.-. ..++.+..... .........+-.+.. +...-+.+...+
T Consensus 1542 ~-----~~n~e~w~~-~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~k-LH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1542 S-----DRNIEYWSV-ESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMK-LHLLLELENSIE 1614 (2382)
T ss_pred h-----cccccchhH-HHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4 222222222 12666666554322211 12221111100 000000011111111 111112222222
Q ss_pred HHHhhccc-CCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249 323 LLTAIHWE-NVSDHAESINEIADLFKNRELYSTALKYYHMLEAN-----AGVHNDGCLHLKIAECSLALKEREKSIIYFY 396 (765)
Q Consensus 323 ~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 396 (765)
.+.+.-.. ....+.+-|.+....-....+..+-+-.+++..-. .....-.+.|...|++....|.++.|....-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 22222111 11111223333322222222344444444444322 1123456899999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccc-cccCc-----ccchhhhhhhHHHHHHHHHHHhcchhH-
Q 004249 397 KALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLEN-KYVNS-----DKTHAWWLNIRIKIKLCRIYKAKGMIE- 469 (765)
Q Consensus 397 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~a~~~~~~~~~~- 469 (765)
.+.+.. -+++....|..+...|+...|+..+++.++... +...| ...+... ...+.+.++......++.+
T Consensus 1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i-~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLI-FKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhh-hhhHHHHHHHHHHHhcchhH
Confidence 998876 467889999999999999999999988774432 21111 1111111 2245666666666666633
Q ss_pred -HHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHH------------HhhhcHHH---HHHHHHHHHHhc
Q 004249 470 -GFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTL------------ASLHRYED---AIKIINLILKLG 525 (765)
Q Consensus 470 -~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~---A~~~~~~al~~~ 525 (765)
+-+..|..+.. ..|.+.+.++.+|.-| .+.|++.. ++-.|.+++.-+
T Consensus 1772 ~~ilk~Y~~~~a---------il~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1772 KDILKYYHDAKA---------ILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYG 1834 (2382)
T ss_pred HHHHHHHHHHHH---------HcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhc
Confidence 23334444443 4455555566666332 23355555 555555666644
No 271
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0023 Score=60.67 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW 168 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 168 (765)
..-..|+-++..++|..|+..|.+.|+....++ ..|.+.+-|.+..|+|..|+....+++.++|.+..+++.-|.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 334567888888888888888888877654443 4566777777778888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 004249 169 LIEQGDTTWAMSCLSEAVKAD 189 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~ 189 (765)
++.+.++.+|...++..+.++
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 888888777777777765543
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.04 Score=47.33 Aligned_cols=126 Identities=7% Similarity=-0.002 Sum_probs=59.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChh
Q 004249 239 KSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTD 318 (765)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (765)
..+..++|+..|..+-+..-.+....+....+.+..+.|+...|+..|..+-...+........+...-+.++...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34555555555555444433333322344555555555666666666555544322111111223344444555555555
Q ss_pred HHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHh
Q 004249 319 KAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA 364 (765)
Q Consensus 319 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 364 (765)
......+.+-....|-...+...||..-.+.|++.+|..+|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555443333233344445555555555555555555555443
No 273
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.021 Score=50.26 Aligned_cols=118 Identities=11% Similarity=0.028 Sum_probs=72.6
Q ss_pred HHHHHHHHHhccCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHH
Q 004249 143 KAMGCYWLAACYKQKDSS---LWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFHLASLYVELGNFQRAADVY 216 (765)
Q Consensus 143 ~A~~~~~~a~~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 216 (765)
+......+....+|.... +-..++..+...|++++|+..++.++....+. .-+-..++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333344444444444432 33456777777888888888887777542221 234567777888888888887777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249 217 RQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA 261 (765)
Q Consensus 217 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 261 (765)
....... -.+......|.++...|+-++|+..|++++...++..
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 6543210 1123345667888888888888888888877764443
No 274
>PRK11619 lytic murein transglycosylase; Provisional
Probab=97.26 E-value=0.47 Score=52.41 Aligned_cols=412 Identities=11% Similarity=0.020 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG--NTAKAMGCYWLAACYKQKDSSLWKLIFPW 168 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 168 (765)
-...+..|...+..|++..+.....++ ...|- ..|...-.+....+ .++ .+...+...|+.+.........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~ 105 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHH
Confidence 356788899999999999987766653 33332 23333333333323 233 3334445566666444333322
Q ss_pred ---HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249 169 ---LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIES 245 (765)
Q Consensus 169 ---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 245 (765)
+...+++..-+.++ ...|.+.......+......|+.++|....+++.......+.....+-..+...|....
T Consensus 106 l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 106 VNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCH
Confidence 33456666555533 23478888888888889999999888888888766554444444444444444444333
Q ss_pred HHHH--HHHHHhcCCCCCCHHHHHHHHH-----------HHHHh-ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004249 246 SVDI--LEDYLKGHPTEADFGVIDLLAS-----------MLVQM-NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICH 311 (765)
Q Consensus 246 A~~~--~~~~~~~~p~~~~~~~~~~l~~-----------~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 311 (765)
.... +..++. ..+.. ....+.. ..... .+...+...+. ..+ ..........++...
T Consensus 182 ~d~w~R~~~al~--~~~~~--lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~----~~~--~~~~~~~~~~~~l~R 251 (644)
T PRK11619 182 LAYLERIRLAMK--AGNTG--LVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR----TTG--PTDFTRQMAAVAFAS 251 (644)
T ss_pred HHHHHHHHHHHH--CCCHH--HHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh----ccC--CChhhHHHHHHHHHH
Confidence 2211 111111 11111 1111111 11111 11111111111 000 011111223344445
Q ss_pred HhcCChhHHHHHHHhhcccCC---CChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccH
Q 004249 312 IQLGNTDKAEILLTAIHWENV---SDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKER 388 (765)
Q Consensus 312 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 388 (765)
....+.+.|...+........ .....++..+|.-....+...+|..++..+... ..+...+.....+....+++
T Consensus 252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDR 328 (644)
T ss_pred HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCH
Confidence 566778888888887533221 112234445554444443366778887765533 23444455555566688898
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchh
Q 004249 389 EKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMI 468 (765)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 468 (765)
+.....+..+-..........+.+|+.+...|+.++|...|+++... .. -|-.++.- ..|..
T Consensus 329 ~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~~--------------fYG~LAa~--~Lg~~ 390 (644)
T PRK11619 329 RGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--RG--------------FYPMVAAQ--RLGEE 390 (644)
T ss_pred HHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--CC--------------cHHHHHHH--HcCCC
Confidence 88877777765444456678888999988899999999999887441 11 01111111 11211
Q ss_pred HHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccC
Q 004249 469 EGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTT 548 (765)
Q Consensus 469 ~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g 548 (765)
-. +.. . . . ......-.....+..+..+...|+...|...+..++... ++.....++. +....|
T Consensus 391 ~~-~~~--~-~--~----~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~------~~~~~~~la~-~A~~~g 453 (644)
T PRK11619 391 YP-LKI--D-K--A----PKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASR------SKTEQAQLAR-YAFNQQ 453 (644)
T ss_pred CC-CCC--C-C--C----CchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CHHHHHHHHH-HHHHCC
Confidence 00 000 0 0 0 000000001123556677888999999999998887643 2233333333 666788
Q ss_pred ChhhHHHHHHHHH
Q 004249 549 DPKLWFDGVRFMV 561 (765)
Q Consensus 549 ~~~~A~~~~~~~l 561 (765)
.++.|+....+..
T Consensus 454 ~~~~ai~~~~~~~ 466 (644)
T PRK11619 454 WWDLSVQATIAGK 466 (644)
T ss_pred CHHHHHHHHhhch
Confidence 8888887765543
No 275
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.21 Score=48.04 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=81.7
Q ss_pred hhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC-
Q 004249 449 WLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG- 527 (765)
Q Consensus 449 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~- 527 (765)
++...+-..+..+|...++|.+|+.....++++..++ -..+.-.++...-..+|....+..+|...+..|......
T Consensus 125 FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl---DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 125 FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL---DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 3344555688899999999999999999988776442 111222444555567788899999999998888776544
Q ss_pred -CCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhC
Q 004249 528 -KFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLH 564 (765)
Q Consensus 528 -~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 564 (765)
-.|.....+...-+.++....||..|..+|-.+++-+
T Consensus 202 YcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 202 YCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred ccCHHHHHHHHHhccceeecccccchHHHHHHHHHccc
Confidence 2244466677766767777899999999999988744
No 276
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.19 E-value=0.01 Score=51.97 Aligned_cols=61 Identities=20% Similarity=0.325 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYL 254 (765)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 254 (765)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666666666666666666666666553
No 277
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.12 E-value=0.0007 Score=64.52 Aligned_cols=95 Identities=21% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD 174 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 174 (765)
-.+|..++..|.+++|++.|..++.++|.....+...+.++..+++...|+..+..++.++|+...-+-..+.....+|+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 34455666667777777777777777777666666777777777777777777777777777666666666666666777
Q ss_pred HHHHHHHHHHHHhcC
Q 004249 175 TTWAMSCLSEAVKAD 189 (765)
Q Consensus 175 ~~~A~~~~~~al~~~ 189 (765)
+.+|...+..+.+++
T Consensus 198 ~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 198 WEEAAHDLALACKLD 212 (377)
T ss_pred hHHHHHHHHHHHhcc
Confidence 777777766666654
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.12 E-value=0.1 Score=53.91 Aligned_cols=276 Identities=12% Similarity=0.023 Sum_probs=133.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHH
Q 004249 131 LGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD--------PNDFKLKFHLASL 202 (765)
Q Consensus 131 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~ 202 (765)
.+.+..++|+++.-.......- .+.+...+..+......|+++++..+++++...- +......+..-.-
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~---~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSN---EDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhcc---CCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3567788899998333333322 2233555556666678899999998888877641 1111111111111
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHH--HHHHHHH-Hhc-CCCCCCHHHHHHHHHHHH
Q 004249 203 YVELGNFQRAADVYRQMVQLCPEN----IEALKMGAKLYQKSGQIESS--VDILEDY-LKG-HPTEADFGVIDLLASMLV 274 (765)
Q Consensus 203 ~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A--~~~~~~~-~~~-~p~~~~~~~~~~l~~~~~ 274 (765)
+....+.+++..+....... +.. ...|...-.. ...+++-= +-.++.. +.. .........|..++.+..
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 22223333333333211100 000 0001100000 01111100 0011111 110 001111235667777777
Q ss_pred HhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCCh--HHHHHHHHHHHHc--cc
Q 004249 275 QMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDH--AESINEIADLFKN--RE 350 (765)
Q Consensus 275 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~la~~~~~--~g 350 (765)
+.|.++.|...+.++...........+.+.+..+......|+..+|+..++..+....... ......+...... ..
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEV 237 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccc
Confidence 7777777777777766653222233455566666667777777777777766654111111 0000000000000 00
Q ss_pred cHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 004249 351 LYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL------KEREKSIIYFYKALQILEDNIDARLTLASLLLED 419 (765)
Q Consensus 351 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 419 (765)
.......... ....+.++..+|...... +..+++...|..+++.+|....+|..+|..+...
T Consensus 238 ~~~~~~~~~~-------~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 238 ISSTNLDKES-------KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccccchhhhh-------HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 0000000000 111235667777777777 7889999999999999999999999988887654
No 279
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.05 E-value=0.67 Score=50.36 Aligned_cols=424 Identities=9% Similarity=-0.024 Sum_probs=229.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 004249 105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI---EQGDTTWAMSC 181 (765)
Q Consensus 105 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 181 (765)
+.-++=+..++.-+.+++.+...+..|..++...|++++-...-..+.++.|..+..|.....-.. ..+.-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344455666677777788888888899999999999999888888888888999988877544332 23667788889
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHH
Q 004249 182 LSEAVKADPNDFKLKFHLASLYV-------ELGNFQRAADVYRQMVQLCPEN-------IEALKMGAKLYQKSGQIESSV 247 (765)
Q Consensus 182 ~~~al~~~p~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~ 247 (765)
|++++.. -.++..|...+.... ..++++.-...|.+++..-... ...+...-..|...-..++-+
T Consensus 173 ~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9998863 345555555554444 4466778888888887653322 234445555666666667788
Q ss_pred HHHHHHHhcCCCCCCHH--HHHHHH--H-HHHHhccHHHHHHHHHHHHHHhc---CCCCccHHHHHHHHHHHHhcCChhH
Q 004249 248 DILEDYLKGHPTEADFG--VIDLLA--S-MLVQMNAYDRVLKHIELVDLVYY---SGKELLLALKIKAGICHIQLGNTDK 319 (765)
Q Consensus 248 ~~~~~~~~~~p~~~~~~--~~~~l~--~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (765)
.++...+... -+.... .|.... . ......+++.|...+.+.+..+. ...+.....+..+.......|++..
T Consensus 252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 8888777654 332211 111111 1 11233455566555444443321 1123334445555666677888888
Q ss_pred HHHHHHhhcccCCCChHHHHHHHHHHH-HccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcc--HHHHHHHHH
Q 004249 320 AEILLTAIHWENVSDHAESINEIADLF-KNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKE--REKSIIYFY 396 (765)
Q Consensus 320 A~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 396 (765)
-...+++++... +.+...|...+... ...+-.+.+...+.+++.. .|....+|-. +.+.+..++ ...-...+.
T Consensus 331 i~l~~eR~~~E~-~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~--cp~tgdL~~r-allAleR~re~~~vI~~~l~ 406 (881)
T KOG0128|consen 331 IQLIEERAVAEM-VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS--CPWTGDLWKR-ALLALERNREEITVIVQNLE 406 (881)
T ss_pred HHHHHHHHHHhc-cccHHHHhhhhhhcccccccccccccccchhhcC--CchHHHHHHH-HHHHHHhcCcchhhHHHHHH
Confidence 888888887666 55577777776554 3444445555666666655 4544444432 222222222 112222233
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc-------------CCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHH
Q 004249 397 KALQILEDNIDARLTLASLLLED-------------AKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYK 463 (765)
Q Consensus 397 ~al~~~p~~~~~~~~l~~~~~~~-------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (765)
+.+... ...+.......... ..+..|...|.......-+. ...++-..|.+..
T Consensus 407 ~~ls~~---~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt-----------~~~~~q~wA~~E~ 472 (881)
T KOG0128|consen 407 KDLSMT---VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDT-----------RTEVLQLWAQVEA 472 (881)
T ss_pred HHHHHH---HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhh-----------HHHHHHHHHHHHH
Confidence 332210 00111111111111 22444444444333211110 0122223333333
Q ss_pred -hcchhHHHHHhhHHHHhhhcccccccChhhHHH-HHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHh
Q 004249 464 -AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRL-LIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGA 541 (765)
Q Consensus 464 -~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 541 (765)
..++.+.+..+....+. ....+.. .++....+-...|+...++.++++++... ..|++...++....
T Consensus 473 sl~~nmd~~R~iWn~imt---------y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~--~~~~~~~ev~~~~~ 541 (881)
T KOG0128|consen 473 SLLKNMDKAREIWNFIMT---------YGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV--VDPEDALEVLEFFR 541 (881)
T ss_pred HHhhchhhhhHhhhcccc---------CCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC--cCchhHHHHHHHHH
Confidence 24555666655443332 1112232 56666666667788888998888888643 23443333333333
Q ss_pred hcccccCChhhHHHHHHH
Q 004249 542 QIPCNTTDPKLWFDGVRF 559 (765)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~ 559 (765)
......|.++.......+
T Consensus 542 r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 542 RFEREYGTLESFDLCPEK 559 (881)
T ss_pred HHHhccccHHHHhhhHHh
Confidence 355556666655544433
No 280
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.023 Score=50.12 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=29.5
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc
Q 004249 339 INEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL 402 (765)
Q Consensus 339 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 402 (765)
-..++.+....|.+++|+..++..... .-.+......|+++...|+.++|+..|+++++.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 344555555555555555555433211 1122233445555555555555555555555554
No 281
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.04 E-value=0.43 Score=48.02 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=33.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q 004249 610 GHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLA 651 (765)
Q Consensus 610 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 651 (765)
+..++.+|+|.++..+-.=..+..| +|.+.-.+|.+.+...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k 509 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK 509 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh
Confidence 4456778999999988888888999 8888888998877443
No 282
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.00 E-value=0.052 Score=54.57 Aligned_cols=110 Identities=13% Similarity=-0.002 Sum_probs=67.1
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHcCC------------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249 112 SVLHEVIRLEEELPNSYHILGLVHDALGN------------TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAM 179 (765)
Q Consensus 112 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 179 (765)
.-|++.++.+|.+..+|..+.......-. .+.-+..+++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45677788888888888888765544322 344556666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHH
Q 004249 180 SCLSEAVKADPNDFKLKFHLASLYVE---LGNFQRAADVYRQMVQ 221 (765)
Q Consensus 180 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~ 221 (765)
.-+++++..+|+++..|...-..... .-.+......|.+++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 66666666666666665544443332 2234555555555543
No 283
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.98 E-value=0.54 Score=48.01 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcc--cccCChhhHHHHHHHHHHhCCCchhh
Q 004249 493 EHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIP--CNTTDPKLWFDGVRFMVKLHPHRLTT 570 (765)
Q Consensus 493 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~A~~~~~~~l~~~p~~~~~ 570 (765)
+....-..+-..+.+.|-+.+|...|.+...+- |.... ++.....+- ...-+...+..+|..++..+-.++..
T Consensus 458 ~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp----p~sl~-l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 458 DSVTLKSKYLDWAYESGGYKKARKVYKSLQELP----PFSLD-LFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred ceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC----CccHH-HHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 333444445566778889999999998887765 22222 222111011 11223777889999999998899999
Q ss_pred hHHHHHHHhhhhh
Q 004249 571 WNRYYKLVSRFEK 583 (765)
Q Consensus 571 ~~~~~~~~~~~~~ 583 (765)
|..|...-...|.
T Consensus 533 w~~y~~~e~~~g~ 545 (568)
T KOG2396|consen 533 WMDYMKEELPLGR 545 (568)
T ss_pred HHHHHHhhccCCC
Confidence 9988776655444
No 284
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.34 Score=45.01 Aligned_cols=187 Identities=12% Similarity=0.083 Sum_probs=137.4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 004249 104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG-DTTWAMSCL 182 (765)
Q Consensus 104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~ 182 (765)
..+|.++..+|+.++..+.. -+.|+..-..++.++|.+-.+|...-.++..++ +..+-++++
T Consensus 39 te~fr~~m~YfRAI~~~~E~-----------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l 101 (318)
T KOG0530|consen 39 TEDFRDVMDYFRAIIAKNEK-----------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL 101 (318)
T ss_pred chhHHHHHHHHHHHHhcccc-----------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34567777777766655544 455666777788899999988887666665543 567888999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249 183 SEAVKADPNDFKLKFHLASLYVELGNFQ-RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA 261 (765)
Q Consensus 183 ~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 261 (765)
.+++..+|.+..+|...-.+....|++. .-+++.+.++..+.++-.+|...-.+....+.++.-+.+..++++.+-.+.
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN 181 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999888 888999999999999999999999999999999999999999998776554
Q ss_pred CHHHHHHHHHHHHH-h-----ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 004249 262 DFGVIDLLASMLVQ-M-----NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ 313 (765)
Q Consensus 262 ~~~~~~~l~~~~~~-~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 313 (765)
. +|+..--+... . -..+.-+.+..+.+.. .|.+..+|..+.-++..
T Consensus 182 S--AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~----vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 182 S--AWNQRYFVITNTKGVISKAELERELNYTKDKILL----VPNNESAWNYLKGLLEL 233 (318)
T ss_pred c--hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHh
Confidence 4 34322111111 1 1234445566666666 56666677666555543
No 285
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.92 E-value=0.067 Score=53.79 Aligned_cols=161 Identities=12% Similarity=0.036 Sum_probs=100.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249 182 LSEAVKADPNDFKLKFHLASLYVELG------------NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI 249 (765)
Q Consensus 182 ~~~al~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 249 (765)
+++.+..+|.+.++|..+....-..- -.+.-+.+|++|++.+|++...+..+-....+..+.++....
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44555556666666655554443321 145667888999999999988888888888888888888899
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHh
Q 004249 250 LEDYLKGHPTEADFGVIDLLASMLVQ---MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTA 326 (765)
Q Consensus 250 ~~~~~~~~p~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 326 (765)
+++++..+|++.. +|..+...... .-.+......|.+++.......... .........++
T Consensus 88 we~~l~~~~~~~~--LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~--------------~~~~~~~~~~e- 150 (321)
T PF08424_consen 88 WEELLFKNPGSPE--LWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR--------------MTSHPDLPELE- 150 (321)
T ss_pred HHHHHHHCCCChH--HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc--------------cccccchhhHH-
Confidence 9999999888766 44433332222 2357788888888776632110000 00000000000
Q ss_pred hcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249 327 IHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN 365 (765)
Q Consensus 327 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 365 (765)
.....++..+...+.+.|..+.|+..++.+++.
T Consensus 151 ------~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 151 ------EFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred ------HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 111345666677778888888888888888877
No 286
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0091 Score=56.84 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHccccHHHHHHHHHHHHhccC-CCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004249 335 HAESINEIADLFKNRELYSTALKYYHMLEANAG-VHN-DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTL 412 (765)
Q Consensus 335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (765)
.+..+-.-|.-|++.++|..|+..|.+.++... +|+ +...|.+.|.|....|+|..|+....+++..+|.+..++++-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 455667778999999999999999999997731 222 456788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249 413 ASLLLEDAKDEEAISLLTPPMSLENKY 439 (765)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (765)
+.++..+.++.+|...++..+..+...
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999999887765443
No 287
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.39 Score=45.06 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC-CCC
Q 004249 452 IRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG-KFP 530 (765)
Q Consensus 452 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~ 530 (765)
...-..+..++++.|+|.+|+......+.+..+ .-..+.-.+.+..-..+|....+..++..-+..|...... .-|
T Consensus 125 ~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk---~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP 201 (421)
T COG5159 125 LELECKLIYLLYKTGKYSDALALINPLLHELKK---YDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP 201 (421)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC
Confidence 344457788999999999999999888876533 1133444556666677888888988888888877765543 223
Q ss_pred -chHHHHHHHHhhcccccCChhhHHHHHHHHHHhCC
Q 004249 531 -VEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHP 565 (765)
Q Consensus 531 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 565 (765)
.-...+..+-+...+...+|.-|..+|-.+++-+.
T Consensus 202 pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 202 PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 33556677777677889999999999999987543
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.83 E-value=0.003 Score=38.83 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 373 CLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
.+|+.+|.++..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56788888888888888888888888888874
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.18 Score=43.49 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=102.2
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC-CCh--HHHHHHHHHHH
Q 004249 270 ASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENV-SDH--AESINEIADLF 346 (765)
Q Consensus 270 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~--~~~~~~la~~~ 346 (765)
+.-+.+.+..++|+..|....+. .....+.-+....+.+....|+...|+..|..+-...+ |.- --+...-+.++
T Consensus 65 AL~lA~~~k~d~Alaaf~~lekt--g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKT--GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 33345567788999999887765 11344566778889999999999999999999754331 111 12455667788
Q ss_pred HccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004249 347 KNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLL 416 (765)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 416 (765)
+..|-|++-....+.+-.-. +|-...+...||..-.+.|++.+|..+|..+.. +...+......+.+.
T Consensus 143 vD~gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred hccccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 99999999888777654332 555567788899999999999999999999887 444444444444443
No 290
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.75 E-value=0.59 Score=46.66 Aligned_cols=168 Identities=15% Similarity=0.111 Sum_probs=119.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH---
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDAL----GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE--- 171 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~--- 171 (765)
......+++..|...+..+-.. .++.....++.+|..- .+..+|..+|..+.. ...+.+.+.+|.+|..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCC
Confidence 3345667788888888776552 3346777888887753 467889999986554 4677888889998877
Q ss_pred -cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q 004249 172 -QGDTTWAMSCLSEAVKADPND-FKLKFHLASLYVELG-------NFQRAADVYRQMVQLCPENIEALKMGAKLYQK--- 239 (765)
Q Consensus 172 -~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 239 (765)
..+..+|..+|+++....... ..+...++.+|..-. +...|...|.++-... ++.+...+|.+|..
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence 458899999999998864333 344777887777642 2337888888887664 67788888877765
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Q 004249 240 -SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277 (765)
Q Consensus 240 -~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 277 (765)
..++.+|..+|.++.+... .. ..+.++ ++...|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~--~~--a~~~~~-~~~~~g 236 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD--GA--ACYNLG-LMYLNG 236 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC--HH--HHHHHH-HHHhcC
Confidence 3478899999999888765 22 566777 666655
No 291
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.71 E-value=0.22 Score=46.15 Aligned_cols=192 Identities=16% Similarity=0.220 Sum_probs=117.6
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCH-HHHHHHHHHHHH
Q 004249 102 YALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACY-----KQKDS-SLWKLIFPWLIE 171 (765)
Q Consensus 102 ~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~-~~~~~la~~~~~ 171 (765)
+...+.++|+..|+++++..|... .++..+..+++.+|++++-...|.+.+.. ..+.. .....+-..-..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 345689999999999999988765 46777888999999999999988877642 11111 111111111112
Q ss_pred cCCHHHHHHHHHHHHhc--CCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------------HHHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKA--DPNDFK----LKFHLASLYVELGNFQRAADVYRQMVQLCPEN------------IEALKMG 233 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~--~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l 233 (765)
..+.+--..+|+..+.. +..+.. .-..+|.+|+..|+|.+-...+++.-...... .+++..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 22333333334333322 122222 23468888888888888877777765443221 2345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHH----HHHHHHHHhccHHHHHHHHHHHHHHh
Q 004249 234 AKLYQKSGQIESSVDILEDYLKGHPTEADFGVID----LLASMLVQMNAYDRVLKHIELVDLVY 293 (765)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~ 293 (765)
..+|..+++-.+-..+|++++.....-+.+.+.- .=|..+.+.|+|++|-.-|-.+.+.+
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 6777777777777888888877655444332211 12345667788888877776666654
No 292
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.70 E-value=1.4 Score=48.79 Aligned_cols=366 Identities=10% Similarity=-0.049 Sum_probs=196.0
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHH---HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004249 113 VLHEVIRLEEELPNSYHILGLVHD---ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD 189 (765)
Q Consensus 113 ~~~~~l~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 189 (765)
-+...+..+|+.|..-........ ..+++..-+.++ ...|.+....+.++......|+.++|.....++....
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 445556678887765554444333 345555555422 2347888888888899999999988888887776655
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------HHH-HcCCHHHHHHHHHHHHhcC
Q 004249 190 PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK-----------LYQ-KSGQIESSVDILEDYLKGH 257 (765)
Q Consensus 190 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-----------~~~-~~g~~~~A~~~~~~~~~~~ 257 (765)
...+.....+-..+...|........-+--+.+..++......+.. ... -..+...+...+ ...
T Consensus 160 ~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~----~~~ 235 (644)
T PRK11619 160 KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA----RTT 235 (644)
T ss_pred CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh----hcc
Confidence 4444444444444444343333221111111111222221111111 111 112222222211 111
Q ss_pred CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH
Q 004249 258 PTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE 337 (765)
Q Consensus 258 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 337 (765)
|.+........++..-....+.+.|...+.+......-..+....++..++.-....+...+|...+....... .+..
T Consensus 236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~ 313 (644)
T PRK11619 236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTS 313 (644)
T ss_pred CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcH
Confidence 11111111223333344566778899888876555221122223334444444334333677888887764332 2333
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004249 338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLL 417 (765)
Q Consensus 338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 417 (765)
.......+....++++.+...+..+-.. ........+.+|+.+...|+.++|...|+++.. +.+ .+-.++.-
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~--~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~-- 385 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQ-- 385 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHh--hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHH--
Confidence 4444445556888999888888876544 345677889999999999999999999999854 332 22223322
Q ss_pred HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHH
Q 004249 418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLL 497 (765)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~ 497 (765)
++|..-. +.. ...|.. .... ...-....+..+...|....|......++.. .+...
T Consensus 386 ~Lg~~~~----~~~--~~~~~~------~~~~-~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-----------~~~~~ 441 (644)
T PRK11619 386 RLGEEYP----LKI--DKAPKP------DSAL-TQGPEMARVRELMYWNMDNTARSEWANLVAS-----------RSKTE 441 (644)
T ss_pred HcCCCCC----CCC--CCCCch------hhhh-ccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------CCHHH
Confidence 2342200 000 000000 0000 0122356778888999999999887776642 12344
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHH
Q 004249 498 IIDLCKTLASLHRYEDAIKIINL 520 (765)
Q Consensus 498 ~~~l~~~~~~~~~~~~A~~~~~~ 520 (765)
...++......|.++.++....+
T Consensus 442 ~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 442 QAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHhh
Confidence 56666777778888888776543
No 293
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.63 E-value=1.9 Score=49.42 Aligned_cols=371 Identities=11% Similarity=0.003 Sum_probs=205.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHc----C---CHHHHHHHHHHHhccCCCCHHHHHH
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDAL----G---NTAKAMGCYWLAACYKQKDSSLWKL 164 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~----g---~~~~A~~~~~~a~~~~p~~~~~~~~ 164 (765)
+..-.+++..+.|+.|+..|+++....|... ++.+..|.....+ | .+++|+..|++.- -.|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 3444668889999999999999999888654 6788888877643 3 4778888888754 35677777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCCCCHHHHH---HHH--
Q 004249 165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL-----GNFQRAADVYRQMVQLCPENIEALK---MGA-- 234 (765)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~---~la-- 234 (765)
.|.+|.++|++++-++++.-+++..|..|..-...-.+..++ .+-..|....--++...|.....-. .+-
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEIL 637 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 999999999999999999999999988875433322222221 1123344444444555554321100 000
Q ss_pred --------------------------HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004249 235 --------------------------KLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL 288 (765)
Q Consensus 235 --------------------------~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 288 (765)
.+-+-.|..---...++++....|- +++...-.+...+|.++-+.+....
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (932)
T PRK13184 638 YHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY----RALADIFYVACDLGNWEFFSQFSDI 713 (932)
T ss_pred HhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH----HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 0111123333333344444444332 2444555556777888766666555
Q ss_pred HHHHhcCCCCccHHH----------HHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH-HHHHHHHHHHccccHH---H
Q 004249 289 VDLVYYSGKELLLAL----------KIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE-SINEIADLFKNRELYS---T 354 (765)
Q Consensus 289 ~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~---~ 354 (765)
....+.. ...+... +..-..+.....+++++.+.+..+ ++.... ++...+.-....++.+ .
T Consensus 714 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (932)
T PRK13184 714 LAEVSDE-ITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT----DPTLILYAFDLFAIQALLDEEGESIIQ 788 (932)
T ss_pred HHHHhhh-ccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC----CHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4432110 1111111 222223444555777777655554 122221 1112222222223322 3
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCC
Q 004249 355 ALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ--ILEDNIDARLTLASLLLEDAKDEEAISLLTPP 432 (765)
Q Consensus 355 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (765)
+++.+.+.... .............+|.-..++++|-+.+...-. ...+...+....|--+...++-+-|...|...
T Consensus 789 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (932)
T PRK13184 789 LLQLIYDYVSE--EERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGC 866 (932)
T ss_pred HHHHHHhccCC--hhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhc
Confidence 33333222211 111223445566778888899999887743211 11334466777777777788888999888877
Q ss_pred CCcccccc-----------CcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHH
Q 004249 433 MSLENKYV-----------NSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPL 478 (765)
Q Consensus 433 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 478 (765)
.+..+-+. ......+||.....+..+.-.+.-.|+.++- +.++.+
T Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 922 (932)
T PRK13184 867 REDALFPRSLDGDIFDYLGKISDNLSWWEKKQLLRQKFLYFHCLGDSEER-DKYRQA 922 (932)
T ss_pred cccccCcchhhccccchhccccccccHHHHHHHHHHHHHHHHHhCChhHh-HHHHHH
Confidence 63222110 0123345666666666666666666666554 344443
No 294
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.63 E-value=0.091 Score=53.41 Aligned_cols=166 Identities=13% Similarity=0.032 Sum_probs=90.2
Q ss_pred HHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---H
Q 004249 118 IRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF---K 194 (765)
Q Consensus 118 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 194 (765)
++.+|-+.+++..++.++..+|+...|.+++++++-.-.......+..-..-...|. +.-- -..+.|. .
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~rL~-----~~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---CRLD-----YRRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---cccC-----CccccchHHHH
Confidence 466888888888888888888888888888888753210000000000000000000 0000 0012222 3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C----CCCHHHHH
Q 004249 195 LKFHLASLYVELGNFQRAADVYRQMVQLCPE-NIEA-LKMGAKLYQKSGQIESSVDILEDYLKGHP-T----EADFGVID 267 (765)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~----~~~~~~~~ 267 (765)
+++.....+.+.|.+..|.++.+-.+.++|. ++-. +..+=....+.++++--+..++....... + -+. ..+
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn--~a~ 182 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN--FAF 182 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc--HHH
Confidence 4455566666777777777777777777776 5433 33333333456666666666655443111 1 112 445
Q ss_pred HHHHHHHHhccH---------------HHHHHHHHHHHHHh
Q 004249 268 LLASMLVQMNAY---------------DRVLKHIELVDLVY 293 (765)
Q Consensus 268 ~l~~~~~~~~~~---------------~~A~~~~~~~~~~~ 293 (765)
..+.++...++. +.|...+.+++..+
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 666666666666 77888888887773
No 295
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.57 E-value=0.28 Score=49.88 Aligned_cols=145 Identities=17% Similarity=0.235 Sum_probs=96.7
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------------------CCC---HHHHHHHHHH
Q 004249 186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC--------------------------PEN---IEALKMGAKL 236 (765)
Q Consensus 186 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~---~~~~~~la~~ 236 (765)
+..+|...+++..++.++..+|+...|.+.+++++-.. +.| -.+++.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 45578888888888888888888888888777775321 112 1245566677
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHhc
Q 004249 237 YQKSGQIESSVDILEDYLKGHPT-EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG-KELLLALKIKAGICHIQL 314 (765)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 314 (765)
+.+.|-+.-|.++.+-.+.++|. ++- .+...+-....+.++++--+..++......... -...+...+..+.++...
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 78889999999999999999988 443 345555556667788877777777655421100 011234556667777777
Q ss_pred CCh---------------hHHHHHHHhhcccC
Q 004249 315 GNT---------------DKAEILLTAIHWEN 331 (765)
Q Consensus 315 ~~~---------------~~A~~~~~~~~~~~ 331 (765)
++. +.|...+.+++...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHh
Confidence 776 67777777776544
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.55 E-value=0.05 Score=46.85 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
+..++.........++.+++..++.-+....|..++.-..-|.++...|++.+|+..|+.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 44566777788888899999999998888999999999999999999999999999999988888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHH
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDFKLK 196 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~ 196 (765)
.+|+..-= .+-..+++..+ ++.+.
T Consensus 90 ~~~D~~Wr-~~A~evle~~~-d~~a~ 113 (160)
T PF09613_consen 90 ALGDPSWR-RYADEVLESGA-DPDAR 113 (160)
T ss_pred HcCChHHH-HHHHHHHhcCC-ChHHH
Confidence 88886432 22334444333 44443
No 297
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.50 E-value=0.0035 Score=59.96 Aligned_cols=93 Identities=15% Similarity=0.004 Sum_probs=76.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249 132 GLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR 211 (765)
Q Consensus 132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 211 (765)
+.-.+..|.+++|++.|..++.++|.....+...+.+++.+++...|+.-+..++.++|+....+-..+.....+|++.+
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 33445567888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCC
Q 004249 212 AADVYRQMVQLCP 224 (765)
Q Consensus 212 A~~~~~~al~~~p 224 (765)
|...+..+.+++-
T Consensus 201 aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 201 AAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHhccc
Confidence 8888888877653
No 298
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.47 E-value=0.031 Score=44.39 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=65.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249 97 DASLHYALGRYEEAISVLHEVIRLEEELPN---SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173 (765)
Q Consensus 97 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 173 (765)
+|..++..|++-+|+++.+..+...+++.. .+..-|.++..+ +...+..+...-+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHH---------
Confidence 467789999999999999999998887764 344445555432 22222112222221
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL 222 (765)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 222 (765)
-.++++|.++..+.|..+..++.+|.-+.....|++++.-.++++..
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 23566677777777766667777776666666677777666666654
No 299
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.45 E-value=0.43 Score=44.39 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHhhcccCC-----------CChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH
Q 004249 305 IKAGICHIQLGNTDKAEILLTAIHWENV-----------SDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC 373 (765)
Q Consensus 305 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 373 (765)
..+|.+++..+++.+-.+.++++..... ..-.++|..-...|..+++...-..+|++++.+...-..|.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4566666666666666655555432111 11123444445677777777777888888886632222333
Q ss_pred HHHH----HHHHHHHhccHHHHHHHHHHHHHHcC-----CCHHH--HHHHHHHHHHcC
Q 004249 374 LHLK----IAECSLALKEREKSIIYFYKALQILE-----DNIDA--RLTLASLLLEDA 420 (765)
Q Consensus 374 ~~~~----la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~--~~~l~~~~~~~g 420 (765)
+.-. =|..+.+.|++++|-..|-.+.+... ....+ +..|+.++.+.|
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 3322 25567888999999988888887642 22222 334666666655
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.45 E-value=0.0078 Score=36.57 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC
Q 004249 373 CLHLKIAECSLALKEREKSIIYFYKALQILEDN 405 (765)
Q Consensus 373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 405 (765)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356778888888888888888888888888763
No 301
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.38 E-value=1.8 Score=46.14 Aligned_cols=194 Identities=12% Similarity=-0.007 Sum_probs=102.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH----------HHHHHHH
Q 004249 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW----------KLIFPWL 169 (765)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~----------~~la~~~ 169 (765)
.+...=..++|+++.+ .+| ++..|..++......-.++.|...|-+.-... .- ... ...+.+-
T Consensus 672 ~Lve~vgledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gi-k~vkrl~~i~s~~~q~aei~ 744 (1189)
T KOG2041|consen 672 NLVEAVGLEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GI-KLVKRLRTIHSKEQQRAEIS 744 (1189)
T ss_pred HHHHHhchHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-ch-hHHHHhhhhhhHHHHhHhHh
Confidence 3444445666666543 344 58899999998888888888888887653321 11 111 1233444
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE--NIEALKMGAKLYQKSGQIESSV 247 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~ 247 (765)
.--|++++|.+.|-.+-. .+ .-..++...|+|-...+.++..-.-..+ -..++..+|..+..+..|++|.
T Consensus 745 ~~~g~feeaek~yld~dr---rD-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADR---RD-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hhhcchhHhhhhhhccch---hh-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888887744322 11 1223445566666655555443211111 1356667777777777777777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHh
Q 004249 248 DILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTA 326 (765)
Q Consensus 248 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 326 (765)
++|...-. ...++.+++....|++-..+.+ . -|......-.+|..+...|.-++|.+.|-+
T Consensus 817 ~yY~~~~~----------~e~~~ecly~le~f~~LE~la~----~----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 817 KYYSYCGD----------TENQIECLYRLELFGELEVLAR----T----LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHhccc----------hHhHHHHHHHHHhhhhHHHHHH----h----cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 77655321 1144455555554444222221 1 122333334445555555555555555443
No 302
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.38 E-value=0.014 Score=54.71 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=33.7
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249 137 ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA 200 (765)
Q Consensus 137 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 200 (765)
..|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3455555555555555555555555555555555555555555555555555555555544443
No 303
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.32 E-value=0.4 Score=47.82 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=102.2
Q ss_pred cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcC-----
Q 004249 104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDA----LGNTAKAMGCYWLAACYKQKD-SSLWKLIFPWLIEQG----- 173 (765)
Q Consensus 104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g----- 173 (765)
..+..+|...|+.+ ....++.+.+.+|.+|.. ..+..+|..+|.++....-.. ..+...++.+|..-.
T Consensus 90 ~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 90 SRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 35688999999954 445678899999999987 459999999999999875333 344778888877642
Q ss_pred --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004249 174 --DTTWAMSCLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241 (765)
Q Consensus 174 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 241 (765)
+...|...|.++.... ++.+.+.+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2337899999888765 78899999988865 3489999999999998766 77888888 666666
No 304
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.31 E-value=1.6 Score=44.83 Aligned_cols=98 Identities=10% Similarity=0.063 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004249 156 QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK 235 (765)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 235 (765)
|-+...+..+-.++.....++-....+.+++... .+..+++.++.+|... ..++-....++.++.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 4444445555555555555555566666666643 3455666677777666 4455566666666666666665666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 004249 236 LYQKSGQIESSVDILEDYLKG 256 (765)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~ 256 (765)
.|.+ ++.+.+..+|.+++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH
Confidence 6655 6666666666666543
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.15 E-value=1.8 Score=43.96 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=109.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA 178 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 178 (765)
...+..|+.-.|-.-+..+++..|.+|......+.+...+|.|+.+...+..+-..-.....+...+-+....+|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 44578899999999999999999999999999999999999999999998766554444445566667778899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249 179 MSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 226 (765)
.....-++...-.++++...-+.....+|-++++...+++.+.++|..
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 999999988777888887777777888899999999999999998765
No 306
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.46 Score=49.12 Aligned_cols=242 Identities=12% Similarity=0.053 Sum_probs=135.1
Q ss_pred ChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchh
Q 004249 490 NHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLT 569 (765)
Q Consensus 490 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 569 (765)
..|.+.-.++..+..+...|+.+.|+.+++..+... ...-..-..+..++ ++.-+.+|..|...+..+.+..--+-.
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~--~kQ~~~l~~fE~aw-~~v~~~~~~~aad~~~~L~desdWS~a 338 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIR--MKQVKSLMVFERAW-LSVGQHQYSRAADSFDLLRDESDWSHA 338 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHH--HHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHhhhhhhHH
Confidence 556777777888888888888888888888776511 00011234556666 778889999999999999887655544
Q ss_pred hhHHHH-HHH-------hhhhhhhhHHHHHHHH---HHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChH
Q 004249 570 TWNRYY-KLV-------SRFEKIFSKHAKLLRN---VRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPL 638 (765)
Q Consensus 570 ~~~~~~-~~~-------~~~~~~~~~a~~~~~~---~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 638 (765)
.+.-+. .++ ...+...+.+..+... .+...|.+.+.-- .-..+|-. |.+-..++|..+.
T Consensus 339 ~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKver-f~~~~~~~~~~~l 408 (546)
T KOG3783|consen 339 FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVER-FVKRGPLNASILL 408 (546)
T ss_pred HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHH-Hhccccccccccc
Confidence 433333 111 1111111233333322 2333333322211 11112211 1111111222222
Q ss_pred HHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchH--HHhHHHHHHHhchHHHHHHHHHHHHhhhhccCC
Q 004249 639 INLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEA--LYNIARAYHHVGLVSLAASYYEKVLAMYQKDCI 716 (765)
Q Consensus 639 ~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~ 716 (765)
+.=..-.+|+-.+..+...+... .+..-.+-.+....+.+. ++-+|-+...+|+...|..+|..+++..-..
T Consensus 409 a~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~-- 482 (546)
T KOG3783|consen 409 ASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR-- 482 (546)
T ss_pred cchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--
Confidence 21113455665555444333222 111111112222233333 5678999999999999999999999763221
Q ss_pred CCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCC-HHHHHHHHHhh
Q 004249 717 IPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGA-VDLARQVLRDH 762 (765)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~-~~~A~~~l~k~ 762 (765)
......-|-|.|-||.+|.+.|. ..+|+..|.|+
T Consensus 483 ------------~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kA 517 (546)
T KOG3783|consen 483 ------------TEDLWAVPFALYELALLYWDLGGGLKEARALLLKA 517 (546)
T ss_pred ------------ccccccccHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 12234558899999999999988 99999999886
No 307
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.13 E-value=0.1 Score=40.67 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc
Q 004249 213 ADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA 278 (765)
Q Consensus 213 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 278 (765)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++...-.+-..+..++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 455666677777777777777777777777777777777777776665442233344444444443
No 308
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.97 E-value=0.51 Score=49.48 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=103.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCCHHHHHH
Q 004249 197 FHLASLYVELGNFQRAADVYRQM------VQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG--HPTEADFGVIDL 268 (765)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 268 (765)
..++.++.-.|++.+|.+.|.+. ++...+ --.+.++.-+...|..++-..+.++-.+- +-..+. .
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----a 708 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----A 708 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----H
Confidence 34566666677777777776543 111110 11345556666666666655555543221 222222 4
Q ss_pred HHHHHHHhccHHHHHHHHH------HHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHH
Q 004249 269 LASMLVQMNAYDRVLKHIE------LVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEI 342 (765)
Q Consensus 269 l~~~~~~~~~~~~A~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 342 (765)
-+.++...|+.++|+...- -++.+...-+....+....++..+.....+.-|.+.|.++-. ...+
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHH
Confidence 5677777888888776532 222221111233344455556666666777777777776521 1234
Q ss_pred HHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 343 ADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKA 398 (765)
Q Consensus 343 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 398 (765)
..+....++|.+|..+-++.-+. -+.+++..|+.+....++++|.+.|.++
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~-----~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEF-----KDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhheeecccchHhHhhhhhCccc-----cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 46667888888888776653332 3456777788888888888887766543
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.97 E-value=0.16 Score=43.84 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004249 162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241 (765)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 241 (765)
+..+..+-...++.+++...+..+--+.|..++.-..-|.++...|++.+|+..|+.+....|..+.+.-.++.++...|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 33344444555555555555555555556666655566666666666666666666655555555555555555555554
Q ss_pred C
Q 004249 242 Q 242 (765)
Q Consensus 242 ~ 242 (765)
+
T Consensus 93 D 93 (160)
T PF09613_consen 93 D 93 (160)
T ss_pred C
Confidence 4
No 310
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.94 E-value=0.1 Score=41.56 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=48.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHHHHHH
Q 004249 167 PWLIEQGDTTWAMSCLSEAVKADPNDF---KLKFHLASLYVELGN-----------FQRAADVYRQMVQLCPENIEALKM 232 (765)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~ 232 (765)
.-++..|++-+|+++.+..+...+++. ..+...|.++..+.. .-.++++|.++..+.|..+..++.
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~ 83 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFE 83 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHH
Confidence 344455555555555555555444333 223333333332211 223566677777777777666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 004249 233 GAKLYQKSGQIESSVDILEDYLKG 256 (765)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~~~~~ 256 (765)
+|.-+-....|+++....++++..
T Consensus 84 la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 84 LASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcc
Confidence 666666666666666666666554
No 311
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.87 E-value=0.021 Score=35.46 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 375 HLKIAECSLALKEREKSIIYFYKALQI 401 (765)
Q Consensus 375 ~~~la~~~~~~g~~~~A~~~~~~al~~ 401 (765)
+..+|.+|...|++++|+.+|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777777777777777777775443
No 312
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.85 E-value=0.11 Score=40.47 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCC
Q 004249 111 ISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD--SSLWKLIFPWLIEQGD 174 (765)
Q Consensus 111 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~ 174 (765)
+..+++.+..+|++..+.+.+|..+...|++++|++.+..++..+++. ..+...+-.++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666777777777777777777777777777777777666543 3444444444444444
No 313
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.83 E-value=4.4 Score=46.59 Aligned_cols=326 Identities=11% Similarity=-0.105 Sum_probs=173.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249 132 GLVHDALGNTAKAMGCYWLAACYKQKDS---SLWKLIFPWLIEQ----G---DTTWAMSCLSEAVKADPNDFKLKFHLAS 201 (765)
Q Consensus 132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~ 201 (765)
..++...+.|+.|+..|++.....|... ++.+..|.....+ | .+.+|+.-|++... .|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence 4567788899999999999998888755 6677777776542 3 47788888877543 5677777899999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCCHHHHHHH-------
Q 004249 202 LYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS-----GQIESSVDILEDYLKGHPTEADFGVIDLL------- 269 (765)
Q Consensus 202 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~~~l------- 269 (765)
+|.+.|++++-+++|.-+++..|+.|..-...-.+.+++ .+-..|....--++...|......--..+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHK 640 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhh
Confidence 999999999999999999999998865433222222211 11233444444455555543321100000
Q ss_pred ----------------------HHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhh
Q 004249 270 ----------------------ASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAI 327 (765)
Q Consensus 270 ----------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 327 (765)
..+-+-.|..---.+.++++... .+..+....-.+....|.++-+......+
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (932)
T PRK13184 641 QQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDL------RDYRALADIFYVACDLGNWEFFSQFSDIL 714 (932)
T ss_pred ccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhc------ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 00111222223333334444433 12244555555667888887766655544
Q ss_pred ccc----CCCChH--------HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH-HHHHHHHHHHHhcc---HHHH
Q 004249 328 HWE----NVSDHA--------ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC-LHLKIAECSLALKE---REKS 391 (765)
Q Consensus 328 ~~~----~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~---~~~A 391 (765)
-.. ..+.+. ..+..-..++.....++++.+.+.. + +|.... +....+.-....++ .-.+
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 715 AEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---T--DPTLILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---C--CHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 211 111111 1122222334445566666654432 2 222221 11111111112222 2222
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHH
Q 004249 392 IIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGF 471 (765)
Q Consensus 392 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 471 (765)
++.+.+..................|.-..++++|-+++..--...-.. ....++...|..+...+.-+-|
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 859 (932)
T PRK13184 790 LQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLD----------EYSEAFVLYGCYLALTEDREAA 859 (932)
T ss_pred HHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhcc----------ccchHHHHHHHHHHhcCchhHH
Confidence 222222211111112333446677777889999998884432211000 0135677778777777777777
Q ss_pred HHhhHHHH
Q 004249 472 VDMLLPLV 479 (765)
Q Consensus 472 ~~~~~~~~ 479 (765)
...+....
T Consensus 860 ~~~~~~~~ 867 (932)
T PRK13184 860 KAHFSGCR 867 (932)
T ss_pred HHHHhhcc
Confidence 66665554
No 314
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.77 E-value=0.79 Score=36.85 Aligned_cols=96 Identities=21% Similarity=0.153 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc------------hHHHHHHHHHHHcCCHHHHHHHHHHHhc------
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP------------NSYHILGLVHDALGNTAKAMGCYWLAAC------ 153 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~------ 153 (765)
...+..|...+..|-|++|...++++......-| -++-.|+.++..+|+|++++..-.+++.
T Consensus 10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG 89 (144)
T PF12968_consen 10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG 89 (144)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence 3446778888888999999999998887653322 3456677777888888776665555543
Q ss_pred -cCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004249 154 -YKQKDSSLW----KLIFPWLIEQGDTTWAMSCLSEAVK 187 (765)
Q Consensus 154 -~~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~ 187 (765)
++.+....| +..+..+...|+.++|+..|+.+.+
T Consensus 90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 333333333 3355556666666666666665543
No 315
>PRK10941 hypothetical protein; Provisional
Probab=95.74 E-value=0.11 Score=50.10 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 198 HLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
++-.++...++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|..-++..++..|+++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 34444445555555555555555555555554555555555555555555555555555555444
No 316
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.74 E-value=0.016 Score=34.74 Aligned_cols=31 Identities=45% Similarity=0.675 Sum_probs=29.2
Q ss_pred hHHHhHHHHHHHhchHHHHHHHHHHHHhhhh
Q 004249 682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQ 712 (765)
Q Consensus 682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~ 712 (765)
.+++++|.++...|+++.|+..|+++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 5789999999999999999999999999877
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.73 E-value=0.56 Score=39.72 Aligned_cols=84 Identities=15% Similarity=0.014 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ 172 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 172 (765)
.++......+..++.+++..++..+--..|+.++.-..-|.++...|++.+|+..|+......+..+-..-.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 45555666777999999999999998999999999999999999999999999999999888777787777888888888
Q ss_pred CCHH
Q 004249 173 GDTT 176 (765)
Q Consensus 173 g~~~ 176 (765)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8754
No 318
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.63 E-value=0.05 Score=37.08 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 004249 128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL 161 (765)
Q Consensus 128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 161 (765)
++.+|..++++|+|++|..+.+.+++.+|++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444444444455555555554444444444443
No 319
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.54 E-value=0.93 Score=47.68 Aligned_cols=185 Identities=12% Similarity=0.038 Sum_probs=98.9
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc-cCCCChHHHHHHHHHHH
Q 004249 268 LLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHW-ENVSDHAESINEIADLF 346 (765)
Q Consensus 268 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~la~~~ 346 (765)
.++.++.-.|++.+|.+.|.+.-.....-.-...--.+..+.-++..|..++-..+.++-.. ...-..| ...+..+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEmL 713 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEML 713 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHHh
Confidence 67778888888888888876642220000000011123334444555555444444333100 0001111 1234666
Q ss_pred HccccHHHHHHHHH------HHHhcc--CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004249 347 KNRELYSTALKYYH------MLEANA--GVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE 418 (765)
Q Consensus 347 ~~~g~~~~A~~~~~------~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 418 (765)
...|+.++|+.+.- -+++++ .+...-+.+..++..+.....+.-|.+.|.++=. ...+.+++..
T Consensus 714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve 785 (1081)
T KOG1538|consen 714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVE 785 (1081)
T ss_pred hcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheee
Confidence 77777777776542 111111 0223334555556666666666666666665422 2335567778
Q ss_pred cCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHH
Q 004249 419 DAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPL 478 (765)
Q Consensus 419 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 478 (765)
.+++++|..+.++.-+.-+ .+++-.|+.+....++++|.+.|.++
T Consensus 786 ~~~W~eAFalAe~hPe~~~---------------dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFKD---------------DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHhHhhhhhCccccc---------------cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 8899999888776655433 34667777777777788777666554
No 320
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.47 E-value=0.047 Score=51.43 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=49.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL 236 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 236 (765)
-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.++.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 345667777777777777777777777777777777777777777777777777777777766655543
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.36 E-value=0.099 Score=35.64 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249 196 KFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229 (765)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 229 (765)
++.+|..+.+.|+|++|..+.+.+++..|++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4444445555555555555555555555554443
No 322
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.29 E-value=0.31 Score=43.90 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccH--HHH
Q 004249 228 EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLL--ALK 304 (765)
Q Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~ 304 (765)
.++..+|..|.+.|+.+.|++.|.++......... ...+..+..+.+..+++..+..++.++........+... ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667777777777777777777776654322211 334556777777777777777777777666432221111 223
Q ss_pred HHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249 305 IKAGICHIQLGNTDKAEILLTAIHWEN 331 (765)
Q Consensus 305 ~~l~~~~~~~~~~~~A~~~~~~~~~~~ 331 (765)
..-|..++..++|.+|...|-.+....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 344666677778888877777765433
No 323
>PRK10941 hypothetical protein; Provisional
Probab=95.23 E-value=0.19 Score=48.45 Aligned_cols=78 Identities=8% Similarity=-0.040 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004249 337 ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLL 416 (765)
Q Consensus 337 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 416 (765)
....++-.++...++++.|+.+.+.++.+ .|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-.....+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 35566778889999999999999999999 9999999999999999999999999999999999999997766544443
No 324
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.00 E-value=0.12 Score=52.68 Aligned_cols=109 Identities=14% Similarity=-0.022 Sum_probs=82.9
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCHHH
Q 004249 85 KKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDAL---GNTAKAMGCYWLAACYKQKDSSL 161 (765)
Q Consensus 85 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~ 161 (765)
.++++.+...+..|.-.+..+....|+..|.+++...|.....+...+.++++. |+.-.|+.....+++++|....+
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 456667777777777777788888888888888888888888887777777654 45556666677777888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 004249 162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF 193 (765)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 193 (765)
|+.|+.++..++++.+|+.+...+....|.+.
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 88888888888888888887777766666443
No 325
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.90 E-value=14 Score=45.99 Aligned_cols=307 Identities=14% Similarity=0.030 Sum_probs=157.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA 178 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 178 (765)
.+|...++++.-...... ...+| .....-......|++..|..+|+++++.+|+....+...-......|.+...
T Consensus 1428 ~lY~~i~dpDgV~Gv~~~-r~a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~ 1502 (2382)
T KOG0890|consen 1428 NLYGSIHDPDGVEGVSAR-RFADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTE 1502 (2382)
T ss_pred HHHHhcCCcchhhhHHHH-hhcCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHH
Confidence 356667777766655543 11122 2233334455667777777777777777777666666666666666666666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHH-HHHHhCCHHHHHHHHH--------------HHHHhCCCCHHHH-HHHHH-------
Q 004249 179 MSCLSEAVKADPNDFKLKFHLAS-LYVELGNFQRAADVYR--------------QMVQLCPENIEAL-KMGAK------- 235 (765)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~--------------~al~~~p~~~~~~-~~la~------- 235 (765)
+...+-.....++..+-+..++. +..+.++++.-..... ..+.....+.-+. -.+..
T Consensus 1503 i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~ 1582 (2382)
T KOG0890|consen 1503 ILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE 1582 (2382)
T ss_pred HhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh
Confidence 66655555444444333333322 2244444444333322 0000001110000 00000
Q ss_pred ---HHHHcCCHHHHHHHHHHH------------H-hcCCCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Q 004249 236 ---LYQKSGQIESSVDILEDY------------L-KGHPTEAD---FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG 296 (765)
Q Consensus 236 ---~~~~~g~~~~A~~~~~~~------------~-~~~p~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 296 (765)
.....|-+..+.++.-++ + ...+++.. ..-|.+....-....+..+-+-.+++..-....+
T Consensus 1583 ~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~ 1662 (2382)
T KOG0890|consen 1583 NLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR 1662 (2382)
T ss_pred hHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc
Confidence 000011222222221111 1 11111111 0012122221111122344444455544332212
Q ss_pred ---CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC---
Q 004249 297 ---KELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHN--- 370 (765)
Q Consensus 297 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 370 (765)
.....+.|...|.+....|.++.|...+-.+.... -+.+....|..+...|+...|+..+++.+... .|+
T Consensus 1663 ~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~-~~~~~~ 1738 (2382)
T KOG0890|consen 1663 SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN-FPDLHT 1738 (2382)
T ss_pred ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh-cccccC
Confidence 34556778888888888999999988887775433 46788888999999999999999999888552 222
Q ss_pred -------C------HHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004249 371 -------D------GCLHLKIAECSLALKE--REKSIIYFYKALQILEDNIDARLTLAS 414 (765)
Q Consensus 371 -------~------~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~ 414 (765)
. ..+...++......|+ ..+-+..|+.+.+..|...+.++.+|.
T Consensus 1739 ~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1739 PYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred CccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHH
Confidence 1 1233444455555555 345567888888888887777777773
No 326
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.99 Score=47.25 Aligned_cols=126 Identities=19% Similarity=0.143 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhCCCchHHHH--HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 004249 110 AISVLHEVIRLEEELPNSYHI--LGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSE-AV 186 (765)
Q Consensus 110 A~~~~~~~l~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 186 (765)
++..+...+..+|.++..+.. +...+...+....+.-.+...+..+|.+..+...|+......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444555555544222 344555556665666666666666666666666666655555554444444433 55
Q ss_pred hcCCCCHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004249 187 KADPNDFKLKFHL------ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK 235 (765)
Q Consensus 187 ~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 235 (765)
...|.+......+ +......|+..++...+.++....|.++.+...+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 5555555443333 555555566666666666666666665544444333
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.81 E-value=1.9 Score=45.31 Aligned_cols=160 Identities=13% Similarity=0.157 Sum_probs=100.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELP-NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW 177 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 177 (765)
......|+++++....... ..-|.-+ .....++..+.++|.++.|+.+- .++...+.| ..+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHH
Confidence 4567899999988777522 2223333 44566777888889888888663 455656555 468999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004249 178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGH 257 (765)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 257 (765)
|.+..+ ..+++..|..||.....+|+++-|..+|+++-. +..+..+|...|+.+.-.+....+....
T Consensus 337 A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 988654 345788999999999999999999999998732 4566777888888766555555544332
Q ss_pred CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249 258 PTEADFGVIDLLASMLVQMNAYDRVLKHIELVD 290 (765)
Q Consensus 258 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 290 (765)
. ++..-.++...|+.++.++.+.+.-
T Consensus 404 ~-------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 D-------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp --------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred C-------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 2344445566677777777766543
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.78 E-value=0.059 Score=32.11 Aligned_cols=30 Identities=23% Similarity=0.144 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 004249 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQ 156 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 156 (765)
++..+|.++...|++++|+..|.+++...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555554444
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.73 E-value=1.2 Score=46.67 Aligned_cols=126 Identities=16% Similarity=0.067 Sum_probs=59.3
Q ss_pred HHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccH
Q 004249 273 LVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELY 352 (765)
Q Consensus 273 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 352 (765)
....++++++........-. +..+......++..+.+.|-++.|+.+ ..+++..+.|+ .+.|+.
T Consensus 271 av~~~d~~~v~~~i~~~~ll----~~i~~~~~~~i~~fL~~~G~~e~AL~~---------~~D~~~rFeLA---l~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL----PNIPKDQGQSIARFLEKKGYPELALQF---------VTDPDHRFELA---LQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTG----GG--HHHHHHHHHHHHHTT-HHHHHHH---------SS-HHHHHHHH---HHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhc----ccCChhHHHHHHHHHHHCCCHHHHHhh---------cCChHHHhHHH---HhcCCH
Confidence 33445666655555321111 122333445555566666666666653 22344444443 456666
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 004249 353 STALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLL 429 (765)
Q Consensus 353 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (765)
+.|.+..+ ..+++..|..||......|+++-|..+|+++-. +-.|..+|.-.|+.+.-.++.
T Consensus 335 ~~A~~~a~-------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 335 DIALEIAK-------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHHCC-------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHH-------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHH
Confidence 66665442 334566777777777777777777777766432 233444444555544433333
No 330
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.71 E-value=0.35 Score=55.41 Aligned_cols=165 Identities=13% Similarity=0.137 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHH------HHHH-HHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------
Q 004249 89 PEIRRMLGDASLHYALGRYEEAIS------VLHE-VIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY------- 154 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~-~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------- 154 (765)
.+....+..+......|.+.+|.+ ++.. .-...|.....+..++.++...|++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 455666777888888888888877 4442 22345677778888888888888888888877766433
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 004249 155 K-QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA--------DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE 225 (765)
Q Consensus 155 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 225 (765)
+ |+....+..++...+..++...|+..+.++... .|.-.....+++.++...++++.|+.+++.++.....
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 2 344456666777777777777777777776654 2333444566666777777777777777777664311
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 226 --------NIEALKMGAKLYQKSGQIESSVDILEDY 253 (765)
Q Consensus 226 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 253 (765)
....+..++++....+++..|....+..
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 1233444555555555555555544443
No 331
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.70 E-value=6.1 Score=40.81 Aligned_cols=89 Identities=9% Similarity=0.036 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 004249 110 AISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD-TTWAMSCLSEAVKA 188 (765)
Q Consensus 110 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 188 (765)
-..+|+.++...+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++..
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34567777777778888888887777777778888889999999999999999888887777666 88888899999999
Q ss_pred CCCCHHHHHH
Q 004249 189 DPNDFKLKFH 198 (765)
Q Consensus 189 ~p~~~~~~~~ 198 (765)
+|+++..|..
T Consensus 170 npdsp~Lw~e 179 (568)
T KOG2396|consen 170 NPDSPKLWKE 179 (568)
T ss_pred CCCChHHHHH
Confidence 9988876643
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.55 E-value=0.42 Score=40.46 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=41.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ 242 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 242 (765)
-...++++++...+..+--+.|+.++.-..-|.++...|+|.+|+..|+...+..+..+...-.++.++...|+
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33455555555555555555566666655666666666666666666666555555545444444555444443
No 333
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=2.1 Score=45.01 Aligned_cols=124 Identities=19% Similarity=0.099 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004249 139 GNTAKAMGCYWLAACYKQKDSSLWKL--IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY 216 (765)
Q Consensus 139 g~~~~A~~~~~~a~~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (765)
|...-++..+...+.++|.++..+.. +...+...+....+...+..++..+|.+..+..+++......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33344666777777788888877544 4666778888889999999999999999999999999988888777766666
Q ss_pred HH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 217 RQ-MVQLCPENIEALKMG------AKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 217 ~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
.. +....|.+......+ +.....+|+..++....+++....|.++.
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 55 788888887665555 88888899999999999999999998855
No 334
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.35 E-value=0.7 Score=43.02 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHccccH-------HHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc
Q 004249 336 AESINEIADLFKNRELY-------STALKYYHMLEANAGVHN----DGCLHLKIAECSLALKEREKSIIYFYKALQIL 402 (765)
Q Consensus 336 ~~~~~~la~~~~~~g~~-------~~A~~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 402 (765)
+.++..+|++|...|+. ..|+..|.++......|. ...+.+.+|.+..+.|++++|..+|.+++...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45666677777666663 345555555554432222 24677788888888888888888888888764
No 335
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=5.1 Score=37.95 Aligned_cols=299 Identities=11% Similarity=0.003 Sum_probs=140.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCC--------CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEE--------LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
+..|+.....+++++|+..|.+++..... ...+...++.+|...|++..-.+..... .++|....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s-------re~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS-------REAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh-------HHHHHHhc
Confidence 56778888999999999999999876221 1246778888888888876544443322 22222111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249 167 PWLIEQGDTTWAMSCLSEAVKADPNDFK---LKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI 243 (765)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 243 (765)
. ....+..+..++..|..++ -...+........+- +-...++. ..-..++.++++.|+|
T Consensus 80 -----k---~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~r-Ekr~fLr~---------~Le~Kli~l~y~~~~Y 141 (421)
T COG5159 80 -----K---PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADR-EKRKFLRL---------ELECKLIYLLYKTGKY 141 (421)
T ss_pred -----c---hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhcccH
Confidence 0 1122233333333332222 111111111111000 00111111 1223455666666666
Q ss_pred HHHHHHHHHHHhc---CCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CC--CCccHHHHHHHHHHHHhcCC
Q 004249 244 ESSVDILEDYLKG---HPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLVYY-SG--KELLLALKIKAGICHIQLGN 316 (765)
Q Consensus 244 ~~A~~~~~~~~~~---~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~ 316 (765)
.+|+......+.. ..+.+. ..++..-..+|....+..++...+..+..... .- +......-..-|...+...+
T Consensus 142 sdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~d 221 (421)
T COG5159 142 SDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRD 221 (421)
T ss_pred HHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeecccc
Confidence 6666665554321 111111 11344555566666666666555554433211 01 12223333444556666666
Q ss_pred hhHHHHHHHhhcccCC--CChHHHHHHHHHHH---HccccHHHHHHHHH--HHHhccCCCCCHHHHHHHHHHHH--Hhcc
Q 004249 317 TDKAEILLTAIHWENV--SDHAESINEIADLF---KNRELYSTALKYYH--MLEANAGVHNDGCLHLKIAECSL--ALKE 387 (765)
Q Consensus 317 ~~~A~~~~~~~~~~~~--~~~~~~~~~la~~~---~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~la~~~~--~~g~ 387 (765)
|..|..+|-++++... ..+..+...+-..+ ...+..++.-..++ ..++.- .....++....+..+. .+.+
T Consensus 222 yktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y-~~r~I~am~avaea~~NRsL~d 300 (421)
T COG5159 222 YKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHY-DDRMIRAMLAVAEAFGNRSLKD 300 (421)
T ss_pred chhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhh-hhhhHHHHHHHHHHhCCCcHhh
Confidence 7777666666554331 22233222222111 12223333333322 111110 3334556666666653 3456
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 004249 388 REKSIIYFYKALQILEDNIDARLTLASLLLED 419 (765)
Q Consensus 388 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 419 (765)
+..|+..|..-+..+|--..-...+-..+...
T Consensus 301 f~~aL~qY~~el~~D~~iRsHl~~LYD~LLe~ 332 (421)
T COG5159 301 FSDALAQYSDELHQDSFIRSHLQYLYDVLLEK 332 (421)
T ss_pred HHHHHHHhhHHhccCHHHHHHHHHHHHHHHHh
Confidence 88888888887766554333333344444433
No 336
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.22 E-value=0.93 Score=36.44 Aligned_cols=108 Identities=13% Similarity=0.046 Sum_probs=67.1
Q ss_pred HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccC--hhhHH
Q 004249 418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFN--HEEHR 495 (765)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~--~~~~~ 495 (765)
..|-+++|...+.++++........+.-...-.+...+..++..+...|++++++.....++.-...-..+-. -.-|.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 3466777776666665543322111111222335567778899999999999999888777742211001111 13467
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 004249 496 LLIIDLCKTLASLHRYEDAIKIINLILKLG 525 (765)
Q Consensus 496 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 525 (765)
.+.+..+..+...|+.++|+..|+.+-+..
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 788889999999999999999999887654
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.18 E-value=0.076 Score=34.27 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=27.3
Q ss_pred hHHHhHHHHHHHhchHHHHHHHHHHHHhhhh
Q 004249 682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQ 712 (765)
Q Consensus 682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~ 712 (765)
.++.|+|.+|...|++++|+.++++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 4689999999999999999999999999875
No 338
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.05 E-value=1.4 Score=39.81 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH----HHHH
Q 004249 195 LKFHLASLYVELGNFQRAADVYRQMVQLCPEN---IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF----GVID 267 (765)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~~ 267 (765)
++..+|..|.+.|+.+.|++.|.++....... .+.++.+..+....+++.....++.++-..-....++ +.-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34455555555555555555555544432221 2334444455555555555555544443322211111 0111
Q ss_pred HHHHHHHHhccHHHHHHHHHHHH
Q 004249 268 LLASMLVQMNAYDRVLKHIELVD 290 (765)
Q Consensus 268 ~l~~~~~~~~~~~~A~~~~~~~~ 290 (765)
.-|..+...++|.+|...|-.+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 33444444555555555554443
No 339
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.88 E-value=1.2 Score=36.82 Aligned_cols=74 Identities=19% Similarity=0.030 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHccc---cHHHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHH
Q 004249 337 ESINEIADLFKNRE---LYSTALKYYHMLEANAGVHN-DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLT 411 (765)
Q Consensus 337 ~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 411 (765)
...+++++++.... +..+.+.+++.+++.. .|. .-+..+.++..+.+.|+|+.++.+....++..|++.++...
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34444555544332 3344555555555411 222 22344555555556666666666666666665555554443
No 340
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.87 E-value=0.093 Score=47.45 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=31.3
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 004249 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD 158 (765)
Q Consensus 102 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 158 (765)
...++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555555555555555555555555555555555555555555555555543
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.72 E-value=4.4 Score=36.69 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHcCCHHHHH
Q 004249 353 STALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED----NIDARLTLASLLLEDAKDEEAI 426 (765)
Q Consensus 353 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 426 (765)
++|...|-++...+ .-++++..+.+|..|. ..+.++|+..+-+++++.+. +++....|+.++...|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~-~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTP-ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45555554444433 3345566666665555 44566666666666665432 3456666666666666666654
No 342
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=0.52 Score=49.47 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 94 MLGDASLHYALGRYEEAISVLHEVIRLEEELP------NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
+...|...++..+|..+++.|...+..-|.+. .....++.||..+.+.+.|.+++..|-+.+|.++-....+..
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 004249 168 WLIEQGDTTWAMSCLSEAVKA 188 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~ 188 (765)
+....|.-.+|+.+.......
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
No 343
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.65 E-value=0.88 Score=42.39 Aligned_cols=28 Identities=7% Similarity=-0.050 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 265 VIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 265 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
.+..+|.+|...|+.+....++++++..
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~ 147 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEF 147 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 4556666666666655555555555444
No 344
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.54 E-value=2.2 Score=35.43 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-cCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249 159 SSLWKLIFPWLIEQGD---TTWAMSCLSEAVK-ADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231 (765)
Q Consensus 159 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 231 (765)
....++++.++....+ ..+.+.+++..++ ..| ..-+..+.++..+.+.++|+.++.+.+..++..|++..+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3555666666665443 4456777777775 333 23466677777777777777777777777777777766543
No 345
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.52 E-value=0.59 Score=34.55 Aligned_cols=63 Identities=8% Similarity=0.110 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHH---HHHHHHcCCHHHHHHHHHHHhc
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHIL---GLVHDALGNTAKAMGCYWLAAC 153 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l---~~~~~~~g~~~~A~~~~~~a~~ 153 (765)
....+.+|..++...+.++|+..++++++..++.++-+..+ ..+|...|+|.+++.+..+-+.
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888889988888888887776555444 4567778888887777655443
No 346
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.25 E-value=0.15 Score=46.15 Aligned_cols=58 Identities=29% Similarity=0.414 Sum_probs=38.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 226 (765)
....++.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455666666666666666666666666666666666666666666666666666655
No 347
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=9.5 Score=40.17 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHHHhh------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 104 LGRYEEAISVLHEVIRLE------------EELPNSYHILGLVHDALGNTAKAMGCYWLA 151 (765)
Q Consensus 104 ~g~~~~A~~~~~~~l~~~------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 151 (765)
..-|++|...|.-+.... |-+.+.+..++.+...+|+.+.|.....++
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~ 310 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG 310 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 455778888777776543 333355556666666666655555544444
No 348
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=9.1 Score=37.43 Aligned_cols=284 Identities=15% Similarity=0.062 Sum_probs=158.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hCCCc--------hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 004249 94 MLGDASLHYALGRYEEAISVLHEVIRL--EEELP--------NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWK 163 (765)
Q Consensus 94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 163 (765)
.+.++.......+.++++..+..++.. .|.+. .....+|..+...|+..+-.......- ..|.
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~R-------pf~~ 79 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLR-------PFLS 79 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH-------HHHH
Confidence 366777788888889999999988874 22222 356677888888887776555554321 2222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249 164 LIFPWLIEQGDTTWAMSCLSEAVKADPN---DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS 240 (765)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 240 (765)
..+. ..|.+..+..++..+. ....-..+..-+...- ..+=..++++. .-..++.+|...
T Consensus 80 ~v~K--------akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA-~~ekRtFLRq~---------Learli~Ly~d~ 141 (411)
T KOG1463|consen 80 SVSK--------AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWA-KREKRTFLRQS---------LEARLIRLYNDT 141 (411)
T ss_pred Hhhh--------HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHH-HHHhHHHHHHH---------HHHHHHHHHHhh
Confidence 2221 2233333333333221 1111111111111000 00111222222 234678889999
Q ss_pred CCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHh
Q 004249 241 GQIESSVDILEDYLKG----HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG---KELLLALKIKAGICHIQ 313 (765)
Q Consensus 241 g~~~~A~~~~~~~~~~----~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 313 (765)
++|.+|+......++. +....-..++..-..+|+...+..+|...+..+....+.- +.....+-..-|..+..
T Consensus 142 ~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ 221 (411)
T KOG1463|consen 142 KRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAA 221 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeec
Confidence 9999998887776542 2222212244466778888888888888887766542210 11222333444667777
Q ss_pred cCChhHHHHHHHhhcccCCC--ChHHHHHH---HHHHHHccccHHHHHHHHH--HHHhccCCCCCHHHHHHHHHHHHH--
Q 004249 314 LGNTDKAEILLTAIHWENVS--DHAESINE---IADLFKNRELYSTALKYYH--MLEANAGVHNDGCLHLKIAECSLA-- 384 (765)
Q Consensus 314 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~~---la~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~la~~~~~-- 384 (765)
..+|..|..+|-++.+.... ++..+... +-.+-...+..++--.++. .+++. ...+..+....+.++..
T Consensus 222 ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--~g~~i~AmkavAeA~~nRS 299 (411)
T KOG1463|consen 222 EKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--AGRDIDAMKAVAEAFGNRS 299 (411)
T ss_pred ccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--cCcchHHHHHHHHHhcCCc
Confidence 78999999998887654422 22333332 2223344555665555443 33443 45566788888887754
Q ss_pred hccHHHHHHHHHHHHHHcCC
Q 004249 385 LKEREKSIIYFYKALQILED 404 (765)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~ 404 (765)
+.+++.|+..|+.-+..+|-
T Consensus 300 LkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 300 LKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHhHHHHhcChH
Confidence 46788888888887776554
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.05 E-value=0.18 Score=28.48 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 004249 737 EAAYNLHLIYKKSGAVDLARQVLRD 761 (765)
Q Consensus 737 ea~~nl~~iy~~~g~~~~A~~~l~k 761 (765)
.+.++||.++...|+.++|+.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5789999999999999999998863
No 350
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=14 Score=38.86 Aligned_cols=247 Identities=14% Similarity=0.086 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289 (765)
Q Consensus 210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 289 (765)
....+.+.......|+++......+.++...|+.+.|+..++..++..-.....-.++.++.++.-+.+|..|-..+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555666667788999888888899999999988888888877761111111224557888888889999999999988
Q ss_pred HHHhcCCCCccHHHHHHHH-HHHHh--------cCChhHHHHHHHhh---cccCCCChHHHHHHHHHHHHccccHHHHHH
Q 004249 290 DLVYYSGKELLLALKIKAG-ICHIQ--------LGNTDKAEILLTAI---HWENVSDHAESINEIADLFKNRELYSTALK 357 (765)
Q Consensus 290 ~~~~~~~~~~~~~~~~~l~-~~~~~--------~~~~~~A~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 357 (765)
... ...+...+..++ .|++. .|+.+.|..+++.. +...+.+.|. ...-..+|.+
T Consensus 330 ~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~----------E~f~~RKver 395 (546)
T KOG3783|consen 330 RDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPL----------EKFIVRKVER 395 (546)
T ss_pred Hhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCch----------hHHHHHHHHH
Confidence 877 444444444444 33322 22333333333321 1110000000 0011112222
Q ss_pred HHHHHHhccCCCCCHHH--HHHHHHHHHHhc--cHHHHHHHHHHHHHH----cCCCHH-HHHHHHHHHHHcCCHHHHHHh
Q 004249 358 YYHMLEANAGVHNDGCL--HLKIAECSLALK--EREKSIIYFYKALQI----LEDNID-ARLTLASLLLEDAKDEEAISL 428 (765)
Q Consensus 358 ~~~~~~~~~~~~~~~~~--~~~la~~~~~~g--~~~~A~~~~~~al~~----~p~~~~-~~~~l~~~~~~~g~~~~A~~~ 428 (765)
+-.+.- . .+..+.+ ++.++.++-... ..++.. -++..++. ++++.- -.+.+|.++..+|+...|..+
T Consensus 396 f~~~~~-~--~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~ 471 (546)
T KOG3783|consen 396 FVKRGP-L--NASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKC 471 (546)
T ss_pred Hhcccc-c--cccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 221110 0 1111111 233333332211 122222 12222221 222222 234489999999999999999
Q ss_pred cCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcch-hHHHHHhhHHHH
Q 004249 429 LTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM-IEGFVDMLLPLV 479 (765)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~ 479 (765)
+....+.... .....|.-+.+++.+|.++...|. ..++...+.++-
T Consensus 472 f~i~~~~e~~-----~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr 518 (546)
T KOG3783|consen 472 FKIQVEKESK-----RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAR 518 (546)
T ss_pred HHHHHHHHHh-----hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 9877654221 123446667899999999999988 888888777775
No 351
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.85 E-value=0.12 Score=33.22 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 004249 736 REAAYNLHLIYKKSGAVDLARQVLRDHCT 764 (765)
Q Consensus 736 ~ea~~nl~~iy~~~g~~~~A~~~l~k~l~ 764 (765)
..++.|||.+|...|++++|..++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46789999999999999999999998864
No 352
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.68 E-value=1.7 Score=50.15 Aligned_cols=166 Identities=15% Similarity=0.078 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCCHHHHHH------HHHH-HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Q 004249 127 SYHILGLVHDALGNTAKAMG------CYWL-AACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA--------DPN 191 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~------~~~~-a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 191 (765)
-....|......|.+.+|.+ .+.. .-.+.|.....+..++.++...|+.++|+..-.++.-+ .|+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34455666667777777776 5542 23346778888999999999999999999888777644 245
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Q 004249 192 DFKLKFHLASLYVELGNFQRAADVYRQMVQL--------CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT---- 259 (765)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---- 259 (765)
....+..++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.+......
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 5567788888888888888888888888764 3444555677888888888999999999988875422
Q ss_pred -CCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 260 -EAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 260 -~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
... ...+..+++++...+++..|+...+....+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 111 223445666666666666666655554444
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.64 E-value=0.14 Score=28.90 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=22.4
Q ss_pred chHHHhHHHHHHHhchHHHHHHHHH
Q 004249 681 QEALYNIARAYHHVGLVSLAASYYE 705 (765)
Q Consensus 681 ~~~~~~lg~~~~~~g~~~~A~~~y~ 705 (765)
+.+++++|+++...|+.++|...++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3578999999999999999999876
No 354
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.54 E-value=0.99 Score=44.99 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=59.4
Q ss_pred CCcHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 004249 86 KVCPEIRRM----LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL 161 (765)
Q Consensus 86 ~~~~~~~~~----~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 161 (765)
...|.+..| +..|...+++++|..|..-|..++....+-. +..+ -.+..+...+.-+ ...
T Consensus 167 s~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~--------a~~k-~~~~~~~di~~va-------SfI 230 (569)
T PF15015_consen 167 SFLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGA--------ALSK-PFKASAEDISSVA-------SFI 230 (569)
T ss_pred ccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhh--------hccC-CCCCChhhHHHHH-------HHH
Confidence 344666655 4556777888888888888777776532110 0000 0000000000000 011
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004249 162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217 (765)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (765)
-..+..||..+++.+-|+....+.+..+|..+.-+...|.++..+.+|.+|...+-
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22355566666666666666666666666666666666666666666666555443
No 355
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.38 E-value=0.29 Score=46.43 Aligned_cols=76 Identities=12% Similarity=0.183 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 004249 155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFH-LASLYVELGNFQRAADVYRQMVQLCPENIEAL 230 (765)
Q Consensus 155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 230 (765)
.|+++..|...+......|-+.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.++++.+|.++..|
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 34444444444444444444444444444444444444444433 22233344444444444444444444444433
No 356
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.12 E-value=0.58 Score=47.95 Aligned_cols=88 Identities=17% Similarity=0.070 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL---GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDIL 250 (765)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (765)
....|+..|.+++...|.....+.+.+.++.+. |+.-.|+.....+++++|....+++.|+.++...+++.+|+...
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 456677777777777777777777777766654 45556666666777777777777777777777777777777777
Q ss_pred HHHHhcCCCCC
Q 004249 251 EDYLKGHPTEA 261 (765)
Q Consensus 251 ~~~~~~~p~~~ 261 (765)
..+....|.+.
T Consensus 469 ~alq~~~Ptd~ 479 (758)
T KOG1310|consen 469 WALQMSFPTDV 479 (758)
T ss_pred HHHhhcCchhh
Confidence 77666666543
No 357
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.06 E-value=15 Score=38.82 Aligned_cols=117 Identities=16% Similarity=0.164 Sum_probs=76.3
Q ss_pred cCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----C-----------
Q 004249 172 QGDTTWAMSCLSEAVKA------------DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL-----C----------- 223 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~----------- 223 (765)
..-|++|...|.-++.. .|.+.+.+..++.++..+|+.+-|....++++=. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34477888888777664 4666788999999999999998888877777532 1
Q ss_pred -----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 224 -----PENIE---ALKMGAKLYQKSGQIESSVDILEDYLKGHPT-EADFGVIDLLASMLVQMNAYDRVLKHIELV 289 (765)
Q Consensus 224 -----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 289 (765)
|.|-. +++.....+.+.|-+.-|.++++-+++++|. ++-. +.+.+-....+..+|+=-++.++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~-~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG-ILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh-HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22222 2333445556778888899998888888888 5542 2223333334455555555555444
No 358
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.92 E-value=13 Score=36.09 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249 226 NIEALKMGAKLYQKSGQIESSVDIL 250 (765)
Q Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~ 250 (765)
++..+..+|..+.+.|++.+|..+|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3555555666666555555555544
No 359
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.67 E-value=0.37 Score=30.11 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=29.3
Q ss_pred hHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249 682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQK 713 (765)
Q Consensus 682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~ 713 (765)
+++..||.+-...+++++|+..|+++|++-.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999998653
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.40 E-value=0.29 Score=31.83 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhc
Q 004249 739 AYNLHLIYKKSGAVDLARQVLRDHC 763 (765)
Q Consensus 739 ~~nl~~iy~~~g~~~~A~~~l~k~l 763 (765)
.++||.+|.+.|+.+.|+++|+..+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 4789999999999999999999875
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.40 E-value=2.4 Score=38.27 Aligned_cols=79 Identities=11% Similarity=-0.005 Sum_probs=63.0
Q ss_pred cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHhccHHHH
Q 004249 314 LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAG--VHNDGCLHLKIAECSLALKEREKS 391 (765)
Q Consensus 314 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A 391 (765)
...-+.|...|-.+-....-++++..+.+|..|. ..+.++|+.++.+++++.. +.-+++++..|+.++...|+++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3355778888888765555677899999999887 5688999999999998841 133689999999999999999988
Q ss_pred HH
Q 004249 392 II 393 (765)
Q Consensus 392 ~~ 393 (765)
--
T Consensus 198 Yi 199 (203)
T PF11207_consen 198 YI 199 (203)
T ss_pred hh
Confidence 53
No 362
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.36 E-value=0.53 Score=44.81 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=71.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249 181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM-GAKLYQKSGQIESSVDILEDYLKGHPT 259 (765)
Q Consensus 181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~ 259 (765)
.|.++....|+++..|...+......|.+.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.++++.+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445555578999999999998899999999999999999999999998876 556677889999999999999999999
Q ss_pred CCC
Q 004249 260 EAD 262 (765)
Q Consensus 260 ~~~ 262 (765)
++.
T Consensus 175 ~p~ 177 (435)
T COG5191 175 SPR 177 (435)
T ss_pred Cch
Confidence 988
No 363
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.63 E-value=17 Score=35.28 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=22.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ 221 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 221 (765)
+..+..+-++....+++++|....++..++.--.. -..+|...++++++
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALk 244 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEEAT--TIVDAERLFKQALK 244 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHH
Confidence 33344444455555555555555555554432221 23445555555544
No 364
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.54 E-value=2.9 Score=32.99 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 266 IDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 266 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
+..++.+....|++++|+..+++++.+
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345555555666666666666666555
No 365
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.23 E-value=3.2 Score=39.43 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=35.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 229 (765)
.+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..+...++..|+++.+
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34455555555555555555555555555555555555555555555555555555555443
No 366
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=22 Score=35.82 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhhc-----ccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC--CCHHH
Q 004249 302 ALKIKAGICHIQLGNTDKAEILLTAIH-----WENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVH--NDGCL 374 (765)
Q Consensus 302 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~ 374 (765)
..++.+..++...|+...-...+...+ ..+..........+-+.|...+.|+.|-....+..--.... ..+..
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY 249 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY 249 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence 345566666666777655555555433 22222334455666678888899999988877655211011 23456
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHcCCHHHHH
Q 004249 375 HLKIAECSLALKEREKSIIYFYKALQILEDNIDA------RLTLASLLLEDAKDEEAI 426 (765)
Q Consensus 375 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~~~~g~~~~A~ 426 (765)
++.+|.+..-+++|..|.+++-.++...|.+... ...+..+-.-+|.+.+-.
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers 307 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERS 307 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchh
Confidence 7888999999999999999999999999975422 222333334456665543
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.21 E-value=0.53 Score=30.61 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=25.1
Q ss_pred HHhHHHHHHHhchHHHHHHHHHHHHhh
Q 004249 684 LYNIARAYHHVGLVSLAASYYEKVLAM 710 (765)
Q Consensus 684 ~~~lg~~~~~~g~~~~A~~~y~k~l~~ 710 (765)
.+++|++|..+|+.+.|....+.++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 479999999999999999999999964
No 368
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.99 E-value=20 Score=34.92 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q 004249 130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNF 209 (765)
Q Consensus 130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 209 (765)
.+-....+..+..+-++....+++++|....++..++.- ...-..+|...++++++.. +..+...+.....|..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQ 262 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccc
Confidence 334444555667777778888888898888888877753 2334567888888887743 2222233333333333
Q ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249 210 QRAADVYRQMVQLCPEN--IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE 287 (765)
Q Consensus 210 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 287 (765)
.+|. .+. ..+ ..+...++.+-.++|+..+|++.++...+..|-..-..+.-++...+....-|.+...++-
T Consensus 263 ~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 263 HEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred hhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 111 122 2344578888889999999999999888777754434455566777766666666555554
Q ss_pred HHH
Q 004249 288 LVD 290 (765)
Q Consensus 288 ~~~ 290 (765)
+.-
T Consensus 336 kYD 338 (556)
T KOG3807|consen 336 KYD 338 (556)
T ss_pred hhc
Confidence 443
No 369
>PRK12798 chemotaxis protein; Reviewed
Probab=89.84 E-value=25 Score=35.89 Aligned_cols=231 Identities=9% Similarity=-0.024 Sum_probs=130.0
Q ss_pred HHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHH-HHHhc
Q 004249 308 GICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAEC-SLALK 386 (765)
Q Consensus 308 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g 386 (765)
+.+|...|--...++.+- ..+...+.+.-..-|..-+-.|+-.+|.+.+..+.... .|.....+..|... .....
T Consensus 87 a~iy~lSGGnP~vlr~L~---~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~-l~~~lg~~laLv~a~l~~~~ 162 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLL---ARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEY-LPAELGAYLALVQGNLMVAT 162 (421)
T ss_pred HHhhHhcCCCHHHHHHHH---HcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhh-cCchhhhHHHHHHHHHhccc
Confidence 444544444443333322 22333345555555556667888899988887654432 23333444444443 34456
Q ss_pred cHHHHHHHHHHHHHHcCCCH--H-HHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHH
Q 004249 387 EREKSIIYFYKALQILEDNI--D-ARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYK 463 (765)
Q Consensus 387 ~~~~A~~~~~~al~~~p~~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (765)
++.+|+..|..+--..|... + +.-.-..+..+.|+.+++..+-.+-......+ ++- ...+-..+....
T Consensus 163 dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S-------~YA--~~F~~~F~~~~~ 233 (421)
T PRK12798 163 DPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHS-------PYA--SQFAQRFVDLVV 233 (421)
T ss_pred CHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccC-------chH--HHHHHHHHHHHH
Confidence 78999999999988888765 3 33334445577888888766554444333222 110 111112222222
Q ss_pred hcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhc
Q 004249 464 AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQI 543 (765)
Q Consensus 464 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 543 (765)
..++-. -...+..++... ..+.-..+|+.++..-.-.|+.+-|.-.-++++.+......+......+.+. .
T Consensus 234 ~~~d~~-~~~~l~~~ls~~-------d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aa-a 304 (421)
T PRK12798 234 RLDDEI-RDARLVEILSFM-------DPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGA-A 304 (421)
T ss_pred hccccc-cHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHH-H
Confidence 222111 112244444322 4455677899999999999999999999999999985533333333333333 4
Q ss_pred ccccCChhhHHHHHHHH
Q 004249 544 PCNTTDPKLWFDGVRFM 560 (765)
Q Consensus 544 ~~~~g~~~~A~~~~~~~ 560 (765)
..-..+.+.|.+.+.++
T Consensus 305 ~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 305 LVASDDAESALEELSQI 321 (421)
T ss_pred ccCcccHHHHHHHHhcC
Confidence 55566677777766554
No 370
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.56 E-value=6.5 Score=37.99 Aligned_cols=64 Identities=22% Similarity=0.246 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249 159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL 222 (765)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 222 (765)
..++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777777777777777777777777776553
No 371
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.55 E-value=35 Score=37.99 Aligned_cols=249 Identities=11% Similarity=0.057 Sum_probs=113.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhCCHH
Q 004249 133 LVHDALGNTAKAMGCYWLAACYKQKD-SSLWKLIFPWLIEQGDTTWAMSCLSEAVKA-DPNDFKLKFHLASLYVELGNFQ 210 (765)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~ 210 (765)
.+..+..-|+-|+...+.- ..+++. ...+...|..++..|++++|...|-+.+.. +|...- .-+.......
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi------~kfLdaq~Ik 414 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI------KKFLDAQRIK 414 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH------HHhcCHHHHH
Confidence 3444555566666554432 222222 244555666677777777777777666653 221111 1112222233
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249 211 RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVD 290 (765)
Q Consensus 211 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 290 (765)
+-..+++...+..-.+.+--..|-.+|.++++.++-.+..++ .+......-.-..-.++.+.+-.++|.-+-.+.-
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 333444444444333333344556677777776654444332 2311110001122233333333444433332221
Q ss_pred HHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC
Q 004249 291 LVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHN 370 (765)
Q Consensus 291 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 370 (765)
. .. ..+-.++...+++++|++++..+ .++.-.......|..++.. ..++-...+-+.......+.
T Consensus 491 ~--------he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~ 555 (933)
T KOG2114|consen 491 K--------HE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQG 555 (933)
T ss_pred c--------CH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCC
Confidence 1 01 12233456677888888888776 1122334555666666543 34444444444433211111
Q ss_pred CHHHH----HHHHHHHHHhccHHHHHHHHHHHHHHcCCCHH
Q 004249 371 DGCLH----LKIAECSLALKEREKSIIYFYKALQILEDNID 407 (765)
Q Consensus 371 ~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 407 (765)
..... ...-.+..-.+++..-..++....+..|+..+
T Consensus 556 ~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 556 KGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred CCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 11111 11222334456666666666667777666553
No 372
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.41 E-value=30 Score=36.13 Aligned_cols=209 Identities=10% Similarity=-0.004 Sum_probs=116.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249 132 GLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR 211 (765)
Q Consensus 132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 211 (765)
-.++...-...-....+.+++... .+..+++.++.+|... ..++-...+++.++.+-++...-..++..|.. ++.+.
T Consensus 73 ~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk 149 (711)
T COG1747 73 LTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSK 149 (711)
T ss_pred HHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhh
Confidence 333333334444555566666654 5677888999999888 55777888999999888888888888888777 88999
Q ss_pred HHHHHHHHHHhCCC---CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 004249 212 AADVYRQMVQLCPE---NI---EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKH 285 (765)
Q Consensus 212 A~~~~~~al~~~p~---~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~ 285 (765)
+..+|.+++...-. +. ++|..+-.. --.+.+.-.....+.-.........-++..+-.-|....++++|++.
T Consensus 150 ~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~I 227 (711)
T COG1747 150 AAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRI 227 (711)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHH
Confidence 99999998764321 11 222222111 12333333333333322222221111122222345556778888888
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHh-cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHh
Q 004249 286 IELVDLVYYSGKELLLALKIKAGICHIQ-LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA 364 (765)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 364 (765)
+...++. +..+..++-.+...+.. -.. ..+.+-|.....+-..-.++.+++.-|++.+.
T Consensus 228 lk~il~~----d~k~~~ar~~~i~~lRd~y~~----------------~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~ 287 (711)
T COG1747 228 LKHILEH----DEKDVWARKEIIENLRDKYRG----------------HSQLEEYLKISNISQSGRNFFEALNDFEKLMH 287 (711)
T ss_pred HHHHhhh----cchhhhHHHHHHHHHHHHhcc----------------chhHHHHHHhcchhhccccHHHHHHHHHHHhe
Confidence 8777777 44444444333322111 111 11222333333343344566777777777765
Q ss_pred c
Q 004249 365 N 365 (765)
Q Consensus 365 ~ 365 (765)
.
T Consensus 288 f 288 (711)
T COG1747 288 F 288 (711)
T ss_pred e
Confidence 5
No 373
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.40 E-value=40 Score=37.55 Aligned_cols=119 Identities=8% Similarity=0.007 Sum_probs=71.0
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HhCCHHHHH
Q 004249 137 ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV---ELGNFQRAA 213 (765)
Q Consensus 137 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~ 213 (765)
..|.-+.-+..++.-+.+++.+...+..|..++...|++++-...-..+..+.|..+..|.....-.. ..++-.++.
T Consensus 91 ~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 34444555566666666666666677777777777777777666666666667777766655543332 235566666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhc
Q 004249 214 DVYRQMVQLCPENIEALKMGAKLYQKS-------GQIESSVDILEDYLKG 256 (765)
Q Consensus 214 ~~~~~al~~~p~~~~~~~~la~~~~~~-------g~~~~A~~~~~~~~~~ 256 (765)
..|++++. +-..+..|...+...... ++++....+|.+++..
T Consensus 171 ~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 171 ELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 77777764 234455565555555533 3345555566666553
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.14 E-value=3.1 Score=32.81 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA 261 (765)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 261 (765)
+...+|.++...|++++|+..+++++++.....
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 345555666666666666666666665544333
No 375
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.83 E-value=44 Score=37.30 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=15.0
Q ss_pred ccccCChhhHHHHHHHHHHhCCCchh
Q 004249 544 PCNTTDPKLWFDGVRFMVKLHPHRLT 569 (765)
Q Consensus 544 ~~~~g~~~~A~~~~~~~l~~~p~~~~ 569 (765)
..-.+++..-...+....+..|+++.
T Consensus 571 ~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 571 GIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred eeeccCHHHHHHHHHHHHhcCCCchh
Confidence 34455666666666656666666543
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.65 E-value=0.97 Score=27.91 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=26.0
Q ss_pred hHHHhHHHHHHHhchHHHHHHH--HHHHHhhhhc
Q 004249 682 EALYNIARAYHHVGLVSLAASY--YEKVLAMYQK 713 (765)
Q Consensus 682 ~~~~~lg~~~~~~g~~~~A~~~--y~k~l~~~~~ 713 (765)
+..+.+|-.+++.|++++|+.. |.-+..++|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 5678899999999999999999 5577777663
No 377
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.51 E-value=43 Score=36.77 Aligned_cols=60 Identities=22% Similarity=0.117 Sum_probs=35.3
Q ss_pred HhhhcHHHHHHHHHHHHHhccC--CCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCch
Q 004249 506 ASLHRYEDAIKIINLILKLGYG--KFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRL 568 (765)
Q Consensus 506 ~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 568 (765)
...|+..+|.+++.-.+-.... +.-..-..+|.+|. ++...|. ...+++.+.++...+.+
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGL-IhA~hG~--~~~~yL~~~Lk~~~~e~ 429 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGL-IHANHGR--GITDYLLQQLKTAENEV 429 (929)
T ss_pred eeccccchHHHHhhhhCCccCCCCCCccccchhhhhhc-cccCcCc--cHHHHHHHHHHhccchh
Confidence 4578888888888766643211 11112345666666 5544444 47888888887655443
No 378
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.41 E-value=2.6 Score=40.66 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 195 LKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY 253 (765)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 253 (765)
++..++..+...|+++.++..+++.+..+|.+...+..+...|...|+...|+..|+++
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 33444444444444444444555544444444444444444444445444444444444
No 379
>PRK12798 chemotaxis protein; Reviewed
Probab=88.26 E-value=33 Score=35.13 Aligned_cols=214 Identities=12% Similarity=0.034 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 004249 159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKA-DPNDFKLKFHLASL-YVELGNFQRAADVYRQMVQLCPENI---EALKMG 233 (765)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l 233 (765)
.+.-..-|..-+-.|+..+|...+..+-.. .|...-.+..|... .....+...|+..|..+--..|... .++..-
T Consensus 112 ~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRs 191 (421)
T PRK12798 112 FDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRS 191 (421)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHh
Confidence 344444455556677777777776554322 12223334433332 3345567777888777777777652 244444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004249 234 AKLYQKSGQIESSVDILEDYLKGHPTEADFG-VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHI 312 (765)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 312 (765)
..+....|+.+++..+-.+.+..+..++... .+..++......++-. -...+..++.... .+....+|..++..-.
T Consensus 192 i~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d--~~~q~~lYL~iAR~Al 268 (421)
T PRK12798 192 LFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMD--PERQRELYLRIARAAL 268 (421)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcC--chhHHHHHHHHHHHHH
Confidence 5555677777777777777777666655411 2223333444333211 1122444444422 3344566777777777
Q ss_pred hcCChhHHHHHHHhhccc---CCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHH
Q 004249 313 QLGNTDKAEILLTAIHWE---NVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLH 375 (765)
Q Consensus 313 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 375 (765)
-.|+.+-|.-.-.+++.. ...+...+.+.-+-...-..++++|+..+..+-.....+.+...+
T Consensus 269 i~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll 334 (421)
T PRK12798 269 IDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALL 334 (421)
T ss_pred HcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHH
Confidence 777777777666665432 223334455555555556666777777777655443345554433
No 380
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.02 E-value=7.9 Score=38.97 Aligned_cols=87 Identities=10% Similarity=0.068 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCCCHHHHHHHHHH
Q 004249 196 KFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYL---KGHPTEADFGVIDLLASM 272 (765)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~~~~l~~~ 272 (765)
-..+..||...++.+-|+....+.+.++|....-+...|.++..+.+|.+|...+--+. -+...+.. -...+..+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q--~~S~lIkl 308 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQ--RISKLIKL 308 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH--hHHHHHHH
Confidence 45688999999999999999999999999999989999999999999999887665443 23332222 22345555
Q ss_pred HHHhccHHHHHHH
Q 004249 273 LVQMNAYDRVLKH 285 (765)
Q Consensus 273 ~~~~~~~~~A~~~ 285 (765)
|.+. ..++|+..
T Consensus 309 yWqa-miEeAiTr 320 (569)
T PF15015_consen 309 YWQA-MIEEAITR 320 (569)
T ss_pred HHHH-HHHHHHhc
Confidence 5443 45555543
No 381
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.97 E-value=2 Score=40.81 Aligned_cols=75 Identities=16% Similarity=-0.119 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249 128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL 202 (765)
Q Consensus 128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (765)
...+=..+...++++.|..+..+.+.++|.++.-+.-.|.+|.++|.+.-|+..++..+...|+++.+-......
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344455777889999999999999999999999999999999999999999999999999999888765544443
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.89 E-value=5.6 Score=29.61 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 233 GAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
.|.-++..++.++|+..++++++..++.+. +.++-.+..+|...|++.+.+.+.-+=+.+
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677777888888888877666544 445556677777778887777765544433
No 383
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=25 Score=35.69 Aligned_cols=167 Identities=12% Similarity=0.122 Sum_probs=107.1
Q ss_pred HHHHHHHHcCCHH-HHHHHHHHHHHhhCCCchHHHHHHHHHHH------------cCCHHHHHHHHHHHhccCCCCHHHH
Q 004249 96 GDASLHYALGRYE-EAISVLHEVIRLEEELPNSYHILGLVHDA------------LGNTAKAMGCYWLAACYKQKDSSLW 162 (765)
Q Consensus 96 ~~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~a~~~~p~~~~~~ 162 (765)
..-......|.|+ +++.+-.+.+..+|+...+|...-.++.. ..-.++-+.+...++..+|+.-.+|
T Consensus 33 s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW 112 (421)
T KOG0529|consen 33 SIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAW 112 (421)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHH
Confidence 3333344445554 56677777778888776665544333322 2235566677778888888888888
Q ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249 163 KLIFPWLIEQGD--TTWAMSCLSEAVKADPNDFKLKFHLASLYVEL----GNFQRAADVYRQMVQLCPENIEALKMGAKL 236 (765)
Q Consensus 163 ~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 236 (765)
.....++.+.+. +..=+.+.+++++.+|.+..+|...=.+.... ....+=+++..+++..++.|-.+|.....+
T Consensus 113 ~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~l 192 (421)
T KOG0529|consen 113 HHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLL 192 (421)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHH
Confidence 888888876654 56778888888888888877765544443332 234566777888888888888887776666
Q ss_pred HHH------cCC------HHHHHHHHHHHHhcCCCCCC
Q 004249 237 YQK------SGQ------IESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 237 ~~~------~g~------~~~A~~~~~~~~~~~p~~~~ 262 (765)
+.. .|. ...-+.....++-.+|++..
T Consensus 193 L~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS 230 (421)
T KOG0529|consen 193 LSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQS 230 (421)
T ss_pred HHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccc
Confidence 552 231 22334444556666777766
No 384
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.70 E-value=1.4 Score=26.06 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHHhCCCchhhhHHHHHHH
Q 004249 548 TDPKLWFDGVRFMVKLHPHRLTTWNRYYKLV 578 (765)
Q Consensus 548 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 578 (765)
|+.+.|...|++++...|.++..|..+....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678899999999999999999998886643
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.64 E-value=2.8 Score=25.92 Aligned_cols=32 Identities=6% Similarity=-0.063 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHH--HHHHHHHcCC
Q 004249 373 CLHLKIAECSLALKEREKSIIY--FYKALQILED 404 (765)
Q Consensus 373 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 404 (765)
+.++.+|-.+...|++++|+.. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455566666666666666666 3355544443
No 386
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.92 E-value=60 Score=35.73 Aligned_cols=300 Identities=12% Similarity=0.057 Sum_probs=160.0
Q ss_pred HcCCHHHHHHHHHHHHHhh--CC----CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH-HHHHHHHHHcCCH
Q 004249 103 ALGRYEEAISVLHEVIRLE--EE----LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW-KLIFPWLIEQGDT 175 (765)
Q Consensus 103 ~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~~la~~~~~~g~~ 175 (765)
..|+..+|.+++...+-.+ |. ...+++.+|.++...|+- ..+++...+....+....+ ..||.-+..+|--
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 4688888888887766442 11 135788888888777764 7778777776554332221 1244444445543
Q ss_pred HH-HHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 176 TW-AMSCLSEAVKADPND--FKLKFHLASLYVELGNFQRAAD-VYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE 251 (765)
Q Consensus 176 ~~-A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (765)
.+ -.+.++..+..+..- ..+-+.+|.+....++. +|++ .+.-+.+..-+...--...|..+...|+-++|-.+.+
T Consensus 447 ~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~ 525 (929)
T KOG2062|consen 447 NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIK 525 (929)
T ss_pred cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH-HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHH
Confidence 22 222233333322211 12344555555544443 3333 3333322221222222345667777888889999998
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249 252 DYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN 331 (765)
Q Consensus 252 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 331 (765)
+++.-...-......+.++..|.-.|+...-..++.-++.- ..++..-..-.+.-+.-..+++.......-+.+..
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD----~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~ 601 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD----VNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESY 601 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc----cchHHHHHHHHHheeeEecChhhchHHHHHHhhhc
Confidence 88764311112234567888888888765544444433322 22222222223333344567777777666654433
Q ss_pred CCChH--HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC---HHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHH
Q 004249 332 VSDHA--ESINEIADLFKNRELYSTALKYYHMLEANAGVHND---GCLHLKIAECSLALKE-----REKSIIYFYKALQI 401 (765)
Q Consensus 332 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~ 401 (765)
..+. .+-..+|.++...|. .+|+.+++.+.. +|.+ ..++..+|.+..++.+ +..-++.|.+.+..
T Consensus 602 -N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~---D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 602 -NPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS---DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND 676 (929)
T ss_pred -ChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc---ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh
Confidence 2222 244556666666664 689999988775 3433 2466667777766654 45556666666654
Q ss_pred cCCCHHHHHHHHHHH
Q 004249 402 LEDNIDARLTLASLL 416 (765)
Q Consensus 402 ~p~~~~~~~~l~~~~ 416 (765)
.. .+....+|-++
T Consensus 677 Kh--Ed~~aK~GAil 689 (929)
T KOG2062|consen 677 KH--EDGMAKFGAIL 689 (929)
T ss_pred hh--hHHHHHHHHHH
Confidence 33 33444444443
No 387
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.84 E-value=13 Score=38.44 Aligned_cols=62 Identities=18% Similarity=0.051 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCch--HHHHH--HHHHHHcCCHHHHHHHHHHHhcc
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPN--SYHIL--GLVHDALGNTAKAMGCYWLAACY 154 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--~~~~~~~g~~~~A~~~~~~a~~~ 154 (765)
..+.++..++..++|..|..++..+...-|.... .+..+ |.-+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4467889999999999999999999886344333 44444 44455778899999999988764
No 388
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.63 E-value=1.7 Score=27.20 Aligned_cols=29 Identities=31% Similarity=0.238 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 373 CLHLKIAECSLALKEREKSIIYFYKALQI 401 (765)
Q Consensus 373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 401 (765)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888775
No 389
>PF13041 PPR_2: PPR repeat family
Probab=84.71 E-value=4 Score=27.45 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=13.5
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhcc
Q 004249 338 SINEIADLFKNRELYSTALKYYHMLEANA 366 (765)
Q Consensus 338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 366 (765)
.|..+...+.+.|++++|.++|+++.+.+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444443
No 390
>PF13041 PPR_2: PPR repeat family
Probab=84.40 E-value=4.2 Score=27.31 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHH
Q 004249 303 LKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIAD 344 (765)
Q Consensus 303 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 344 (765)
.+..+...+.+.|++++|.++|+++.+.....+...+..+..
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445555556666666666665554444444444444433
No 391
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.75 E-value=51 Score=31.69 Aligned_cols=104 Identities=17% Similarity=0.089 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-CHHH---HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHH
Q 004249 227 IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA-DFGV---IDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLA 302 (765)
Q Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 302 (765)
.+++.++|..|.+.++.+.+.+++.+.++..-... ...+ -..+|.+|..+.-.++.++..+.+++. +.+-.....
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCHHhhhh
Confidence 45566666666666666666666665554322111 0001 124455555444445555555555444 111111112
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249 303 LKIKAGICHIQLGNTDKAEILLTAIHWEN 331 (765)
Q Consensus 303 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 331 (765)
.....|.......++.+|-.++...+...
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 22334555555566666666666555433
No 392
>PF12854 PPR_1: PPR repeat
Probab=81.62 E-value=3 Score=25.34 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHE 116 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 116 (765)
|++..+-.....+.+.|+.++|.++|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3333333333445555555555555543
No 393
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.35 E-value=9.8 Score=34.76 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=50.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 159 (765)
..+++.+...+|+...+.-++..|.+......+-..+.-.|++++|...++-+-.+.|+..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3467778888888888888888888888888888888888888888888888888887654
No 394
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.25 E-value=67 Score=32.76 Aligned_cols=144 Identities=7% Similarity=-0.047 Sum_probs=103.5
Q ss_pred ChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhh-hhHHHHHHHHHHHhcCCCCCchhhhhhh----hhhhhhHHHHH
Q 004249 549 DPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKI-FSKHAKLLRNVRAKYRDFVPPIIISGHQ----FTMISHHQDAA 623 (765)
Q Consensus 549 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~~g~~----~~~~~~~~~A~ 623 (765)
-.+.-+.+...+++.+|++-.+|+...+++.+.+.. +.....++.++++..|.+..++.-.-.+ ........+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 445567788899999999999999999999876665 6678889999999999988877433333 33333467778
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCc---hhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHH
Q 004249 624 REYLEAYKLLPENPLINLCVGTALINLALGVRLQN---KHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHH 693 (765)
Q Consensus 624 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~ 693 (765)
.+-.+++..++.|--+.-...+..-... .+...+ ....+...+.+...+.-..|+++.+++..=+....
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~-~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLH-PKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhc-cccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 8888999988888666555555444333 223333 24556677888888888899999998886555544
No 395
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.23 E-value=53 Score=31.59 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=30.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHhcCChhHHHHHHH
Q 004249 267 DLLASMLVQMNAYDRVLKHIELVDLVYYSGK--ELLLALKIKAGICHIQLGNTDKAEILLT 325 (765)
Q Consensus 267 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 325 (765)
..+|..|+..|++++|+.+|+.+...+.... .....+...+..|....|+.+..+.+.-
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3566666666666666666666654433211 1122334444555555555555444433
No 396
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=80.69 E-value=67 Score=33.83 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=17.0
Q ss_pred HHHHHHccccHHHHHHHHHHHHhc
Q 004249 342 IADLFKNRELYSTALKYYHMLEAN 365 (765)
Q Consensus 342 la~~~~~~g~~~~A~~~~~~~~~~ 365 (765)
-|.-|...|+...|+.+|..+...
T Consensus 376 Ag~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 376 AGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 346677777777777777777654
No 397
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.64 E-value=1.1e+02 Score=35.13 Aligned_cols=55 Identities=15% Similarity=-0.026 Sum_probs=36.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004249 98 ASLHYALGRYEEAISVLHEVIRLEEELPN-----SYHILGLVHDALGNTAKAMGCYWLAA 152 (765)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~a~ 152 (765)
-..+++...|++|+.+.+-....+|.... .....|..++.+|++++|...|.+..
T Consensus 314 i~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 314 IQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 34566777799999888766554443321 11112566888999999999998763
No 398
>PF12854 PPR_1: PPR repeat
Probab=80.34 E-value=4.2 Score=24.67 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=8.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 004249 230 LKMGAKLYQKSGQIESSVDIL 250 (765)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~ 250 (765)
|..+...|.+.|+.++|.++|
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~ 30 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELF 30 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHH
Confidence 333333333333333333333
No 399
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.87 E-value=74 Score=32.36 Aligned_cols=155 Identities=13% Similarity=-0.008 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCC-CCc
Q 004249 453 RIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGK-FPV 531 (765)
Q Consensus 453 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~ 531 (765)
..++.....+..++++++|...-...+....-...-..+--....++.+..++...|+...-...+...+....-. +..
T Consensus 127 Y~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e 206 (493)
T KOG2581|consen 127 YLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEE 206 (493)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcch
Confidence 3344445555667889998877766654221100000122234566667777777888777666666555533221 233
Q ss_pred hHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhh
Q 004249 532 EKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGH 611 (765)
Q Consensus 532 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~ 611 (765)
....+..++.+.|...+.++.|.....+.. +|++... + ...+ .++.+|.
T Consensus 207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~sn-n--------------e~AR--------------Y~yY~Gr 255 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASN-N--------------EWAR--------------YLYYLGR 255 (493)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccccccc-H--------------HHHH--------------HHHHHhh
Confidence 466677777778888888888877765543 3332111 0 0011 1244688
Q ss_pred hhhhhhhHHHHHHHHHHHHhhCCCChH
Q 004249 612 QFTMISHHQDAAREYLEAYKLLPENPL 638 (765)
Q Consensus 612 ~~~~~~~~~~A~~~~~~a~~~~p~~~~ 638 (765)
+...+++|..|..+|..|+...|++..
T Consensus 256 IkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 256 IKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 888899999999999999999998643
No 400
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.71 E-value=6.2 Score=33.76 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCC
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGN 140 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 140 (765)
..++..|...+..|++.-|..+...++..+|++..+....+.++.++|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3446677777888888888888888888888888888777777766553
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.56 E-value=8.6 Score=36.77 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249 162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220 (765)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 220 (765)
+...+..|...|.+.+|+.+.++++..+|-+...+..+-.++...|+--.+...|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33456667778888888888888888888777777788888888887777777776654
No 402
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.29 E-value=5.8 Score=23.27 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=18.3
Q ss_pred ccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249 386 KEREKSIIYFYKALQILEDNIDARLTLASL 415 (765)
Q Consensus 386 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 415 (765)
|+.+.|...|++++...|.+...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 345666666666666666666666655443
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.21 E-value=19 Score=33.03 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=29.6
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249 203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE 260 (765)
Q Consensus 203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 260 (765)
+.+.+...+|+...+.-++..|.+......+-.+++-.|+|++|...++-+-...|+.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3344445555555555555555555544455555555555555555555555554443
No 404
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.39 E-value=38 Score=34.99 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHhhc-------ccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 004249 305 IKAGICHIQLGNTDKAEILLTAIH-------WENVSDHAESINEIADLFKNRELYSTALKYYHMLE 363 (765)
Q Consensus 305 ~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 363 (765)
..+..++.-+|||..|++.++.+- ..-++-+..+++.+|-+|+..++|.+|++.|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677788888877776642 11123334566666666666666666666666554
No 405
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.96 E-value=12 Score=35.76 Aligned_cols=62 Identities=23% Similarity=0.196 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004249 194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255 (765)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 255 (765)
..+...+..|...|.+.+|++..++++.++|-+...+..+..++...|+--.++..|++.-+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44566778899999999999999999999999999999999999999998888888877543
No 406
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.83 E-value=7.7 Score=38.21 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249 180 SCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220 (765)
Q Consensus 180 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 220 (765)
.+|.+|+.+.|.+...+..+|.++...|+.-.|+-+|-+++
T Consensus 3 ~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 3 RYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 33334444444444444444444443444444443333333
No 407
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.72 E-value=12 Score=36.89 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249 110 AISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE 171 (765)
Q Consensus 110 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 171 (765)
|+.+|.+|+...|.+...|..+|.++...|+.-.|+-+|-+++......+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666654443335555555555444
No 408
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.51 E-value=1.3e+02 Score=34.56 Aligned_cols=193 Identities=10% Similarity=0.009 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCCh--hhHHHHHHHHHHhCCCchhhhHHH
Q 004249 497 LIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDP--KLWFDGVRFMVKLHPHRLTTWNRY 574 (765)
Q Consensus 497 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~~ 574 (765)
-+..|+..|...|.+++|++++.+...-.....+.....+.. ........+.. +-..++-...++.+|....-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~-ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~---- 580 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEK-IIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ---- 580 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHH-HHHHHHHhcccchhHHHHHhhhhhccCchhhee----
Confidence 456678889999999999999988876331000111111111 11122223333 55666666666666654211
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHHHh-
Q 004249 575 YKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPE-NPLINLCVGTALINLAL- 652 (765)
Q Consensus 575 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~- 652 (765)
.+.......-.+.+.-.. .-++......-++.+++.++...-. ++....++...|.....
T Consensus 581 ----------------Ift~~~~~~~~sis~~~V--l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~ 642 (877)
T KOG2063|consen 581 ----------------IFTSEDKQEAESISRDDV--LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLE 642 (877)
T ss_pred ----------------eeeccChhhhccCCHHHH--HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhh
Confidence 111000000000111111 1134456677889999998877765 57888888888888776
Q ss_pred CcccCchh----HH--HHHHHHHHHHhhcccC-------CCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhh
Q 004249 653 GVRLQNKH----QC--VAQGLAFLYNNLRLAE-------NSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQ 712 (765)
Q Consensus 653 ~~~~~~~~----~~--~~~a~~~~~~~~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~ 712 (765)
+.....+- +. ......++....-..| +..+-+...+.++..+|++++|+..|-..|..-+
T Consensus 643 ~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~ 715 (877)
T KOG2063|consen 643 QASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDID 715 (877)
T ss_pred ccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchh
Confidence 32222221 11 1222233322211112 2346678889999999999999999988887543
No 409
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=75.50 E-value=59 Score=28.95 Aligned_cols=187 Identities=15% Similarity=0.097 Sum_probs=102.7
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHH-----HcCCHHHHHHHHHHHhccCCCCHH
Q 004249 86 KVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHD-----ALGNTAKAMGCYWLAACYKQKDSS 160 (765)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~p~~~~ 160 (765)
+..|+.-.+++. ..---+.+|++|..+|..--..+ ..+...+.+|..++ ..+++..|+..+..+-. .+.+.
T Consensus 31 EK~Pe~C~lLgd-YlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~ 106 (248)
T KOG4014|consen 31 EKRPESCQLLGD-YLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQ 106 (248)
T ss_pred cCCchHHHHHHH-HHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHH
Confidence 345565555543 22224567777777776543332 34556666665554 24567788888887765 35667
Q ss_pred HHHHHHHHHHHc-----CC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004249 161 LWKLIFPWLIEQ-----GD--TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG 233 (765)
Q Consensus 161 ~~~~la~~~~~~-----g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 233 (765)
+...+|.++..- ++ ..+|.+++.++... .+..+.+.|...+..-. ++ +....|.... -...
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~-p~~~ 174 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGK--EK-------FKTNAPGEGK-PLDR 174 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccc--hh-------hcccCCCCCC-Ccch
Confidence 777777766542 22 56788888877654 35566666666554432 12 1112331110 0122
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHH
Q 004249 234 AKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM----NAYDRVLKHIELVDLV 292 (765)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~ 292 (765)
+..+.-..+.+.|.++--++.++..- . +.-++.+.|..- .+-++|..+-.++.++
T Consensus 175 ~~~~~~~kDMdka~qfa~kACel~~~--~--aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 175 AELGSLSKDMDKALQFAIKACELDIP--Q--ACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhhHhHHHHHHHHHHHHhcCCh--H--HHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 34445566777888877777765422 1 333555555432 2455565555555544
No 410
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=74.59 E-value=54 Score=28.04 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=15.3
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004249 206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQ 238 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 238 (765)
.+.....+.+++.++..++.++..+..+..+|.
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 344444445555444444444444444444444
No 411
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.10 E-value=71 Score=34.29 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=62.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAM 179 (765)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 179 (765)
.+.-.|+++.|...+-.+ | .+....++..+..+|-.++|++ +.++. .-.+ .+..+.|+++.|.
T Consensus 595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~-d~rF---elal~lgrl~iA~ 657 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTDP-DQRF---ELALKLGRLDIAF 657 (794)
T ss_pred HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCCh-hhhh---hhhhhcCcHHHHH
Confidence 455677888777654332 2 2344556666666666665543 33322 2222 3346778888887
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004249 180 SCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ 221 (765)
Q Consensus 180 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 221 (765)
....+ .++..-|..||.+....|++..|.++|.++..
T Consensus 658 ~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 658 DLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 76544 34566688888888888888888888887743
No 412
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.90 E-value=40 Score=34.14 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
++..+|.-|...|+++.|++.|.++-........ ...+.++..+-...|+|.....+..++...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4556666666677777777766664333222111 224445556666666666666666655544
No 413
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.80 E-value=89 Score=29.77 Aligned_cols=52 Identities=13% Similarity=0.028 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhccC-CCCchHHHH---HHHHhhcccccCChhhHHHHHHHHHH
Q 004249 511 YEDAIKIINLILKLGYG-KFPVEKEEL---YFLGAQIPCNTTDPKLWFDGVRFMVK 562 (765)
Q Consensus 511 ~~~A~~~~~~al~~~~~-~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~~l~ 562 (765)
.+.|...|++|+.+... ..|.+|..+ .......|...|+.++|+...++++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45677777777776544 335555443 23333345568999999999888875
No 414
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.78 E-value=56 Score=35.03 Aligned_cols=126 Identities=21% Similarity=0.220 Sum_probs=75.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA 178 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 178 (765)
..+-.+|-.++|++ ..++ ++-.+. +..+.|+++.|.+...++ ++..-|..||.+....|++..|
T Consensus 622 ~Fle~~g~~e~AL~-------~s~D-~d~rFe---lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 622 HFLESQGMKEQALE-------LSTD-PDQRFE---LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hHhhhccchHhhhh-------cCCC-hhhhhh---hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhH
Confidence 34445555555554 3333 333333 446779999988876654 5677799999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 179 MSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY 253 (765)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 253 (765)
.++|.++... -.|-.++...|+-+.-...-..+-+....|.. -.+|+..|+++++.+.+...
T Consensus 686 ~EC~~~a~d~--------~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 686 SECFLRARDL--------GSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhcch--------hhhhhhhhhcCChhHHHHHHHHHHhhcccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 9999887543 12223334445444333333333222222221 13567788888888877653
No 415
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=72.50 E-value=8.4 Score=22.92 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=14.2
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHhc
Q 004249 340 NEIADLFKNRELYSTALKYYHMLEAN 365 (765)
Q Consensus 340 ~~la~~~~~~g~~~~A~~~~~~~~~~ 365 (765)
..+...|.+.|++++|..+|.++...
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 34445555556666666666555544
No 416
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=71.74 E-value=74 Score=28.38 Aligned_cols=134 Identities=14% Similarity=0.087 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHc-----CC--HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 004249 105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDAL-----GN--TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW 177 (765)
Q Consensus 105 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----g~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 177 (765)
++...|++.+..+-. -+.+.+...+|.++..- ++ ..+|+.++.++-.+ .+..+.+.|...++.-. +.
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~--~k 160 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGK--EK 160 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccc--hh
Confidence 567888888887754 56788888888887642 23 67899999999876 46666777776665432 22
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHH
Q 004249 178 AMSCLSEAVKADP--NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS----GQIESSVDILE 251 (765)
Q Consensus 178 A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~ 251 (765)
+....| ..+. ..+..+....+.+.|.++--++-++ .++.+..++.+.|..- .+.++|..+-.
T Consensus 161 -------~~t~ap~~g~p~---~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~ 228 (248)
T KOG4014|consen 161 -------FKTNAPGEGKPL---DRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKD 228 (248)
T ss_pred -------hcccCCCCCCCc---chhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHH
Confidence 122233 1121 2334455567889999998888776 4566777777776532 34566666665
Q ss_pred HHHhc
Q 004249 252 DYLKG 256 (765)
Q Consensus 252 ~~~~~ 256 (765)
++.++
T Consensus 229 rA~e~ 233 (248)
T KOG4014|consen 229 RAKEI 233 (248)
T ss_pred HHHHH
Confidence 55543
No 417
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=70.96 E-value=8.3 Score=38.03 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=80.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 004249 97 DASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT 176 (765)
Q Consensus 97 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 176 (765)
.+...++.++++.|..-+.++++.-...+ ..+..+... +.....+.-......++.+-+..+.+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s------------~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQS------------RDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccc------------ccccccccc---ccccccccccccccchHHhcccccCCC
Confidence 35668899999999999988876432100 000000000 011111222233444777777788888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004249 177 WAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY 237 (765)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 237 (765)
.|+..-..++..++....+++..+..+....++++|++.+..+....|++..+...+..+-
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 8887777777777777788888888888888888888888888888888766555444443
No 418
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.95 E-value=56 Score=33.82 Aligned_cols=60 Identities=10% Similarity=-0.210 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHhc
Q 004249 129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSS--LWKLI--FPWLIEQGDTTWAMSCLSEAVKA 188 (765)
Q Consensus 129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 188 (765)
...+...+..++|..|...+..+...-|.... .+..+ |..+...-++.+|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566677888888888888888774233332 33333 33455677788888888887664
No 419
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.05 E-value=47 Score=34.31 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004249 162 WKLIFPWLIEQGDTTWAMSCLSEAVKAD---------PNDFKLKFHLASLYVELGNFQRAADVYRQMVQ 221 (765)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 221 (765)
...|.+++.-+|+|..|++.++.. +++ +-....++..|-+|..+++|.+|++.|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788899999999887653 211 22346678899999999999999999988764
No 420
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=69.62 E-value=2.4e+02 Score=33.40 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 004249 374 LHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTP 431 (765)
Q Consensus 374 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (765)
++...|..+...+.+++|.-.|+++=++ -.-..+|...|++.+|+.+..+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~q 990 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQ 990 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHh
Confidence 4444555555556666665555543222 1112344445555555554443
No 421
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=69.37 E-value=64 Score=33.51 Aligned_cols=71 Identities=17% Similarity=0.011 Sum_probs=44.7
Q ss_pred HHHHHHHhcchhHHHHHhhHHHHh--hhccccc-----------------------------------------ccChhh
Q 004249 457 KLCRIYKAKGMIEGFVDMLLPLVC--ESSHQEE-----------------------------------------TFNHEE 493 (765)
Q Consensus 457 ~~a~~~~~~~~~~~A~~~~~~~~~--~~~~l~~-----------------------------------------~~~~~~ 493 (765)
.++--+...|.++.|++.+.+-+- +..+|++ +.....
T Consensus 123 ~laadhvAAGsFetAm~LLnrQiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~ 202 (422)
T PF06957_consen 123 SLAADHVAAGSFETAMQLLNRQIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPLSLS 202 (422)
T ss_dssp -SHHHHHHCT-HHHHHHHHHHHC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB----HH
T ss_pred CcHHHHHHhCCHHHHHHHHHHHhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcCCHH
Confidence 567788899999999998887652 1111111 111223
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC
Q 004249 494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG 527 (765)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 527 (765)
.....+..|.-+...|++.+|+..|+.++...+-
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l 236 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPL 236 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhe
Confidence 3444556777788999999999999999986543
No 422
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=68.96 E-value=1.6e+02 Score=31.06 Aligned_cols=26 Identities=27% Similarity=0.169 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh
Q 004249 96 GDASLHYALGRYEEAISVLHEVIRLE 121 (765)
Q Consensus 96 ~~a~~~~~~g~~~~A~~~~~~~l~~~ 121 (765)
..|..++-.|+|+-|...|+.+.+..
T Consensus 213 ~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 213 RLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45789999999999999999887644
No 423
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=68.77 E-value=74 Score=27.18 Aligned_cols=51 Identities=16% Similarity=0.312 Sum_probs=32.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249 234 AKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE 287 (765)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 287 (765)
...+...+.+...+.+++.++..++.++. .+..+..+|.+.+ ..+.+..++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~--~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPA--LQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchh--HHHHHHHHHHHHC-HHHHHHHHH
Confidence 34445567788888888888877665444 5667777776543 344444444
No 424
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.24 E-value=1.2e+02 Score=29.26 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=56.0
Q ss_pred chHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004249 681 QEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLR 760 (765)
Q Consensus 681 ~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~ 760 (765)
..+.+.+|+-|...|+++.|+.+|++++....+. +=..+..++...|...++..|+.+..+.+-=
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE---------------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5678899999999999999999999998876632 1234668899999999999999998887655
Q ss_pred hhc
Q 004249 761 DHC 763 (765)
Q Consensus 761 k~l 763 (765)
+.+
T Consensus 243 eLl 245 (247)
T PF11817_consen 243 ELL 245 (247)
T ss_pred HHh
Confidence 544
No 425
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=68.17 E-value=21 Score=29.23 Aligned_cols=73 Identities=12% Similarity=-0.004 Sum_probs=51.4
Q ss_pred HHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 004249 683 ALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRD 761 (765)
Q Consensus 683 ~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k 761 (765)
-+..+|..-.+.+..-.|+-+|++||.+..+-- .+. +.+.....-.+.-.-.|||..+...|+.+-..++|+-
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~-~~~-----~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLql 75 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEID-ESN-----EIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQL 75 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc-ccc-----cccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHH
Confidence 356788888999999999999999999987420 000 0000011112344579999999999999999988864
No 426
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=68.06 E-value=8.8 Score=22.15 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249 266 IDLLASMLVQMNAYDRVLKHIELVDL 291 (765)
Q Consensus 266 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 291 (765)
|..+...|.+.|++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45666666666777777666666554
No 427
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=67.75 E-value=37 Score=35.06 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 107 YEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYW 149 (765)
Q Consensus 107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 149 (765)
.-+|+.+++.++...|.+......+..+|...|-.+.|...|.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555555555555555555555555555555555555554
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.74 E-value=2.1e+02 Score=31.95 Aligned_cols=105 Identities=13% Similarity=0.084 Sum_probs=64.1
Q ss_pred HHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHH
Q 004249 310 CHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKERE 389 (765)
Q Consensus 310 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 389 (765)
-++..|+..+|.++-.+.- -.+...|......+...+++++-.++-+. ...|-.|.-......+.|+.+
T Consensus 693 ~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks-------kksPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS-------KKSPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc-------cCCCCCchhHHHHHHhcccHH
Confidence 3556677777777666542 23355666666677777777654443321 122344455567777888888
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCC
Q 004249 390 KSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPM 433 (765)
Q Consensus 390 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (765)
+|.+++-++-.. . .....|.+.|++.+|.+.--+..
T Consensus 762 EA~KYiprv~~l----~----ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 762 EAKKYIPRVGGL----Q----EKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HHhhhhhccCCh----H----HHHHHHHHhccHHHHHHHHHHhc
Confidence 888777654221 1 56677778888888877654433
No 429
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=67.32 E-value=14 Score=21.90 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=14.0
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHh
Q 004249 339 INEIADLFKNRELYSTALKYYHMLEA 364 (765)
Q Consensus 339 ~~~la~~~~~~g~~~~A~~~~~~~~~ 364 (765)
|..+...+.+.|+++.|..+|+.+.+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555544
No 430
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.67 E-value=28 Score=38.07 Aligned_cols=105 Identities=10% Similarity=0.074 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC---CCHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHc-CCCHH
Q 004249 335 HAESINEIADLFKNRELYSTALKYYHMLEANAGVH---NDGCLHLKIAECSL---ALKEREKSIIYFYKALQIL-EDNID 407 (765)
Q Consensus 335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~~~~ 407 (765)
++++..++-..|....+|+.-+++.+.+..++..- +...+.+..+-++- +-|+.++|+...-.+++.. |-.++
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 35566666666777777777777766665552000 00111111222222 2366777777777776654 44456
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHhcCCCCCccccc
Q 004249 408 ARLTLASLLLED---------AKDEEAISLLTPPMSLENKY 439 (765)
Q Consensus 408 ~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~ 439 (765)
.+...|++|..+ +..+.|++.|+++.+..|..
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 666666666543 45677889999999888776
No 431
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.35 E-value=1.5e+02 Score=29.38 Aligned_cols=104 Identities=15% Similarity=0.067 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---C-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHH
Q 004249 227 IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA---D-FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLA 302 (765)
Q Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 302 (765)
.+++...|..|++.|+-+.|.+.+.+..+..-.-. + .-....+|..|....-..+-++..+..++. +.+-.....
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-GgDWeRrNR 182 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-GGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCChhhhhh
Confidence 45667777777777777777777766554322111 1 111224455554443333333333333333 111111122
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249 303 LKIKAGICHIQLGNTDKAEILLTAIHWEN 331 (765)
Q Consensus 303 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 331 (765)
....-|.......++.+|-.+|-..+...
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 23344555566667777777776665443
No 432
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.19 E-value=2.5e+02 Score=33.11 Aligned_cols=173 Identities=10% Similarity=0.010 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------CC-----------CCC--HHHHHHHHHHHHHhccHH
Q 004249 228 EALKMGAKLYQKSGQIESSVDILEDYLKGH--------------PT-----------EAD--FGVIDLLASMLVQMNAYD 280 (765)
Q Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------p~-----------~~~--~~~~~~l~~~~~~~~~~~ 280 (765)
...+.+|.+|...|...+|+.+|.++..-. |. ... ...|....+++...+-.+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 345677777888888888888887765422 11 111 112335566777778888
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHH------
Q 004249 281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYST------ 354 (765)
Q Consensus 281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~------ 354 (765)
.+++.-.++++..+.+.|........+-.-+...|.+-+|...+-+.-. ....-+.+..+..+++..|.++.
T Consensus 1001 ~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg~l~~L~~fpf 1078 (1480)
T KOG4521|consen 1001 EVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECGELEALATFPF 1078 (1480)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhccchHHHhhCCc
Confidence 8888888899887777776666677777777888888888776655311 01123355556666666665532
Q ss_pred ------HHH-HHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHcC
Q 004249 355 ------ALK-YYHMLEANAGVHNDGCLHLKIAECSLALKEREKSI-IYFYKALQILE 403 (765)
Q Consensus 355 ------A~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p 403 (765)
-.. +++.+-... .-.....|..|-..+...+++.+|- -.|+.+..+..
T Consensus 1079 igl~~eve~~l~esaaRs~-~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1079 IGLEQEVEDFLRESAARSS-PSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred cchHHHHHHHHHHHHhhcC-ccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 222 222222221 2223345555666777888877766 45677766643
No 433
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.62 E-value=1.6e+02 Score=29.38 Aligned_cols=133 Identities=13% Similarity=0.030 Sum_probs=83.9
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh-----cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcccc
Q 004249 277 NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ-----LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNREL 351 (765)
Q Consensus 277 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 351 (765)
+-.+++...+.+++.. . .+.+..+...++-++.. .-++..-..+|.-+.... .++.+-.+.+....+..-
T Consensus 270 ~lI~eg~all~rA~~~-~--~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRAVAla~~~G 344 (415)
T COG4941 270 ALIDEGLALLDRALAS-R--RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRAVALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHHc-C--CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHHHHHHHhhh
Confidence 3456777788887766 2 23444444444444432 234555555666554332 235555566666655556
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004249 352 YSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLAS 414 (765)
Q Consensus 352 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 414 (765)
...++...+.+...+.-......+...|.++.+.|+.++|...|++++.+.++..+..+....
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 777777777666542123344567778999999999999999999999998887765554433
No 434
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=64.42 E-value=11 Score=21.68 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 231 KMGAKLYQKSGQIESSVDILEDYL 254 (765)
Q Consensus 231 ~~la~~~~~~g~~~~A~~~~~~~~ 254 (765)
..+...|.+.|++++|.+.+++..
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 344455555555555555555543
No 435
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=64.42 E-value=2.4e+02 Score=31.56 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=14.0
Q ss_pred HHHHcCCHHHHHHhcCCCC
Q 004249 415 LLLEDAKDEEAISLLTPPM 433 (765)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~~ 433 (765)
-+...|++++|++.+++.-
T Consensus 514 ~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHTT-HHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHhCC
Confidence 3467899999999987655
No 436
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=63.67 E-value=98 Score=30.15 Aligned_cols=136 Identities=7% Similarity=-0.045 Sum_probs=76.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCC--CchHHHHHHHHH---HHcCCH----HHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 97 DASLHYALGRYEEAISVLHEVIRLEEE--LPNSYHILGLVH---DALGNT----AKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 97 ~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~---~~~g~~----~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
....++..++|++=-..+.+......+ ..+..+..+... +.+... ..-...++.-++..|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 446678889999888888887754332 122112222111 111111 13455566666777888888887777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 244 (765)
.+....=--.....- +.-...-+.... .-.+.|...+.+++.++|....+...+..+-...|.++
T Consensus 86 ~~~~~Aw~~RG~~~A------~~V~~~~W~~~~------~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYA------STVTEAQWLGAH------QACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHccchh------cccCHHHHHHHH------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 665431100000000 001112221111 22567888888999999988888888888888888765
No 437
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=62.93 E-value=13 Score=36.84 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=83.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHH
Q 004249 131 LGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQ 210 (765)
Q Consensus 131 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 210 (765)
.|.-.++.++++.|..-+.++...-.. ....+..+... +.....+.-......++.+-...+.+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~------------~s~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSE------------QSRDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcc------------ccccccccccc---ccccccccccccccchHHhcccccCCC
Confidence 355667788888888888877653210 00000011111 111122223344556888889999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 211 RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 211 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
.|+..-..++..++....+++..+..+....++++|++.++.+....|++..
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 9999888888888888999999999999999999999999999999999876
No 438
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=62.83 E-value=1.5e+02 Score=28.44 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHh----cCCCCccHHHHHHHHHHHH-hcCChhHHHHHHHhh
Q 004249 279 YDRVLKHIELVDLVY----YSGKELLLALKIKAGICHI-QLGNTDKAEILLTAI 327 (765)
Q Consensus 279 ~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 327 (765)
.+.|...|+.+.+.. ++.+|....+..+.+..++ -+++.++|..+.+++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~a 197 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 197 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346667777666552 2333333333344444333 346677666655554
No 439
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=61.59 E-value=1.5e+02 Score=28.24 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=8.1
Q ss_pred HhccHHHHHHHHHHHH
Q 004249 384 ALKEREKSIIYFYKAL 399 (765)
Q Consensus 384 ~~g~~~~A~~~~~~al 399 (765)
..|+.++|+...++++
T Consensus 181 i~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 181 ILNDPEKAIEIAKQAF 196 (236)
T ss_dssp TSS-HHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHH
Confidence 3566666665555544
No 440
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.67 E-value=1.6e+02 Score=28.36 Aligned_cols=167 Identities=10% Similarity=0.057 Sum_probs=95.2
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHhhCCCchHHHHHHHHHHH--------cCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 96 GDASLHYALGRY-EEAISVLHEVIRLEEELPNSYHILGLVHDA--------LGNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 96 ~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
++........+| ..|++.-...+..+|..-.+|...-.+... ..-.+.-+.++..++.-+|.+-..|...-
T Consensus 36 gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~ 115 (328)
T COG5536 36 GRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQ 115 (328)
T ss_pred HHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHH
Confidence 333333343333 245555555666666554444443333322 12244556677778888888888877665
Q ss_pred HHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHhCCHHHHHHHHHHHHHhCCCCHHHHHHH---HH
Q 004249 167 PWLIEQ--GDTTWAMSCLSEAVKADPNDFKLKFHLASLY------VELGNFQRAADVYRQMVQLCPENIEALKMG---AK 235 (765)
Q Consensus 167 ~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~ 235 (765)
.++... .++..-....+++++.+|.+..+|...-.+. .....+..-.++-..++..++.+..+|... ..
T Consensus 116 ~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~ 195 (328)
T COG5536 116 WMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIE 195 (328)
T ss_pred HHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHH
Confidence 555443 5577777788888888888876654433333 222334444555566777788887777655 33
Q ss_pred HHHHcCC------HHHHHHHHHHHHhcCCCCCC
Q 004249 236 LYQKSGQ------IESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 236 ~~~~~g~------~~~A~~~~~~~~~~~p~~~~ 262 (765)
..+..|+ +++-+++.-..+-.+|++..
T Consensus 196 ~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S 228 (328)
T COG5536 196 RRFNRGDVISQKYLEKELEYIFDKIFTDPDNQS 228 (328)
T ss_pred HHHhhcccchHHHHHHHHHHHHhhhhcCccccc
Confidence 3333443 33444555555556777766
No 441
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=60.29 E-value=18 Score=21.41 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 266 IDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 266 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
|+.+...|.+.|++++|.++|.++...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 556666777777777777777766543
No 442
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=60.21 E-value=33 Score=29.43 Aligned_cols=48 Identities=21% Similarity=0.046 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 004249 373 CLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDA 420 (765)
Q Consensus 373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 420 (765)
+.....+.-....|++.-|.+....++..+|++.+++...+.++.++|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555555555555555554444
No 443
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.92 E-value=1.7e+02 Score=28.36 Aligned_cols=137 Identities=11% Similarity=-0.054 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHH
Q 004249 261 ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESIN 340 (765)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 340 (765)
.++..+..+|..+.+.|++.+|..+|-..-.- ...+...+....... ..+...+.+.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~-------~~~~~~~ll~~~~~~----------------~~~~e~dlfi 144 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDP-------SAFAYVMLLEEWSTK----------------GYPSEADLFI 144 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH-------HHHHHHHHHHHHHHH----------------TSS--HHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh-------hHHHHHHHHHHHHHh----------------cCCcchhHHH
Confidence 34557778888888888888887776432111 111111111111111 2244455555
Q ss_pred HHHH-HHHccccHHHHHHHHHHHHhc-------------cCCCCCHHHHH-HHHHHHHHhcc---HHHHHHHHHHHHHHc
Q 004249 341 EIAD-LFKNRELYSTALKYYHMLEAN-------------AGVHNDGCLHL-KIAECSLALKE---REKSIIYFYKALQIL 402 (765)
Q Consensus 341 ~la~-~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~~~~~-~la~~~~~~g~---~~~A~~~~~~al~~~ 402 (765)
..+. .|...++...|...+....+. ...+..|...+ .+-..-++.++ +..-.+.|+..++.+
T Consensus 145 ~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd 224 (260)
T PF04190_consen 145 ARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRD 224 (260)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCcccccc
Confidence 5553 356778888888776555433 10122332111 11111122233 334445555566667
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 004249 403 EDNIDARLTLASLLLEDA 420 (765)
Q Consensus 403 p~~~~~~~~l~~~~~~~g 420 (765)
|........+|.+|....
T Consensus 225 ~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 225 PSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCC
Confidence 777778888899888754
No 444
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.73 E-value=2.1e+02 Score=29.33 Aligned_cols=63 Identities=10% Similarity=0.143 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhc
Q 004249 265 VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIH 328 (765)
Q Consensus 265 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 328 (765)
++..+|.-|...|+.+.|++.|.++... -.........+.++..+-+..|++.....+..++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 5678899999999999999999885544 33344556677777777888888877776666653
No 445
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.37 E-value=1.2e+02 Score=33.92 Aligned_cols=169 Identities=14% Similarity=0.066 Sum_probs=90.7
Q ss_pred HHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHH
Q 004249 416 LLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHR 495 (765)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~ 495 (765)
+.+.+.+++|+...+......+.. .-..+...+..-+...|++++|-.....+.. ++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~----------~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g------------n~~ 423 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERF----------VIKKVGKTYIDHLLFEGKYDEAASLCPKMLG------------NNA 423 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCcccc----------chHHHHHHHHHHHHhcchHHHHHhhhHHHhc------------chH
Confidence 456778888888887766654432 0123444555566778889988877766653 223
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHH
Q 004249 496 LLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYY 575 (765)
Q Consensus 496 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 575 (765)
..|..-...+...++...- ...-|...|.-....|.... +++-. .=..-|.+.++..|.+...-....
T Consensus 424 ~eWe~~V~~f~e~~~l~~I-------a~~lPt~~~rL~p~vYemvL-ve~L~----~~~~~F~e~i~~Wp~~Lys~l~ii 491 (846)
T KOG2066|consen 424 AEWELWVFKFAELDQLTDI-------APYLPTGPPRLKPLVYEMVL-VEFLA----SDVKGFLELIKEWPGHLYSVLTII 491 (846)
T ss_pred HHHHHHHHHhccccccchh-------hccCCCCCcccCchHHHHHH-HHHHH----HHHHHHHHHHHhCChhhhhhhHHH
Confidence 3333333344444443221 12233333322333444433 22222 224567777777777643322111
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhh
Q 004249 576 KLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKL 632 (765)
Q Consensus 576 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 632 (765)
... ...++++..+....-.++..|+..++|..|+..|.++.+.
T Consensus 492 sa~--------------~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 492 SAT--------------EPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred hhc--------------chHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccCh
Confidence 111 1112223333334445899999999999999999887553
No 446
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.07 E-value=96 Score=34.27 Aligned_cols=120 Identities=13% Similarity=-0.006 Sum_probs=68.1
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChH------HHHHHHHHHH---HccccHHHHHHHHHHHHhccCC
Q 004249 298 ELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHA------ESINEIADLF---KNRELYSTALKYYHMLEANAGV 368 (765)
Q Consensus 298 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~la~~~---~~~g~~~~A~~~~~~~~~~~~~ 368 (765)
-...+...++-..|....+|+.-+++.+.+-. . |+.. .+.+..+.++ -.-|+-++|+...-.+++.. .
T Consensus 198 VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e-g 274 (1226)
T KOG4279|consen 198 VLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-I-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE-G 274 (1226)
T ss_pred ccCHHHHHHHHhhhccccchHHHHHHHHHHHh-C-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc-C
Confidence 34445555555556666666666665555421 1 2111 1111112222 23467777777777666654 5
Q ss_pred CCCHHHHHHHHHHHHH---------hccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 004249 369 HNDGCLHLKIAECSLA---------LKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAK 421 (765)
Q Consensus 369 ~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 421 (765)
|-.++.+...|++|.. .+..+.|+++|+++.+..|.. .+-.+++.++...|.
T Consensus 275 ~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 275 PVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGE 335 (1226)
T ss_pred CCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhh
Confidence 5566677767777644 345678888888888887753 334556666666654
No 447
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.83 E-value=3.9e+02 Score=31.75 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACY 154 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 154 (765)
+...+.+|.+|...|...+|+.+|.++..-
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 456788899999999999999999988653
No 448
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=57.29 E-value=2.4e+02 Score=29.09 Aligned_cols=56 Identities=16% Similarity=-0.079 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-----chHHHHHHHH--HHHcCCHHHHHHHHHH
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEEL-----PNSYHILGLV--HDALGNTAKAMGCYWL 150 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~--~~~~g~~~~A~~~~~~ 150 (765)
..++..++..++|..|...|.+++...++. ...+..++.+ +...-++++|.+.+++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 346678999999999999999999875432 2344445444 4567788999999986
No 449
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.53 E-value=1.2e+02 Score=25.47 Aligned_cols=46 Identities=9% Similarity=-0.063 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249 354 TALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKAL 399 (765)
Q Consensus 354 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 399 (765)
++..+|..+...+.....+..|...|..+...|++++|.+.|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 6666666666554456667777777777777777777777777654
No 450
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=56.51 E-value=55 Score=26.57 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCC
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGN 140 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 140 (765)
...+.+|...+..|++..|.+.+.++-+..+..+-.+..-+.+...+||
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 4455666667777777777777777655544433444444555554443
No 451
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.27 E-value=67 Score=32.92 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=30.3
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHH----hhCCCChHHHHHHHHHHH
Q 004249 607 IISGHQFTMISHHQDAAREYLEAY----KLLPENPLINLCVGTALI 648 (765)
Q Consensus 607 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~p~~~~~~~~l~~~~~ 648 (765)
++.|.+.+.+|+-++|.+++..+. ++.-+|....++.++.|.
T Consensus 271 LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGfe 316 (568)
T KOG2561|consen 271 LLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGFE 316 (568)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCC
Confidence 567999999999999999999665 333444455555666554
No 452
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=56.17 E-value=2.3e+02 Score=28.56 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=72.9
Q ss_pred HHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHH
Q 004249 311 HIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREK 390 (765)
Q Consensus 311 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 390 (765)
++..|+...|.++-... .-++...|+....++...++|++-..+... ...|-.|.-...++...|+..+
T Consensus 187 li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCCHHH
Confidence 46678887777776554 234577888888899999999876654321 2234556666788888999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249 391 SIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMS 434 (765)
Q Consensus 391 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (765)
|..+..++ |. -....+|.+.|++.+|.+..-+..+
T Consensus 256 A~~yI~k~----~~-----~~rv~~y~~~~~~~~A~~~A~~~kd 290 (319)
T PF04840_consen 256 ASKYIPKI----PD-----EERVEMYLKCGDYKEAAQEAFKEKD 290 (319)
T ss_pred HHHHHHhC----Ch-----HHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 98888771 21 3456778899999999877655444
No 453
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=55.49 E-value=2.2e+02 Score=28.28 Aligned_cols=160 Identities=11% Similarity=0.028 Sum_probs=98.6
Q ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCCHHH
Q 004249 86 KVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAAC----YKQKDSSL 161 (765)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----~~p~~~~~ 161 (765)
+.+++....+. ..+..+++.+.++..++.+..+|--.+.++..+.++.++| ++.+.......+. .-|.-.
T Consensus 97 ~p~ad~~~~~~---~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~-- 170 (301)
T TIGR03362 97 PPPADRVADYQ---ELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLL-- 170 (301)
T ss_pred CCCHHHHHHHH---HHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChh--
Confidence 33444444444 3457889999999999999998888899999999999999 4555555443322 222211
Q ss_pred HHHHHHHHHHcCCH---HHHHHHHHHHHh-----------cCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 004249 162 WKLIFPWLIEQGDT---TWAMSCLSEAVK-----------ADP--NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE 225 (765)
Q Consensus 162 ~~~la~~~~~~g~~---~~A~~~~~~al~-----------~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 225 (765)
.+.+..|-. ++....+..... ..+ .+......-+..+...|..+.|+..++..+...+.
T Consensus 171 -----~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s 245 (301)
T TIGR03362 171 -----ELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQARE 245 (301)
T ss_pred -----hcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCC
Confidence 111111110 111111111000 011 11233334477788889999999999986554333
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249 226 N---IEALKMGAKLYQKSGQIESSVDILEDYLKG 256 (765)
Q Consensus 226 ~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 256 (765)
. ......++.++...|..+-|...++.+.+.
T Consensus 246 ~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 246 PRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 334567889999999999999999988764
No 454
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=55.36 E-value=2.2e+02 Score=29.99 Aligned_cols=58 Identities=3% Similarity=-0.127 Sum_probs=28.9
Q ss_pred HHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249 341 EIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKAL 399 (765)
Q Consensus 341 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 399 (765)
.+.+.++..|..++++.++..=+..+..|++ .....+-..+...|++..|.+....+.
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~-~s~n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDN-FSFNLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCCh-hhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 4445555555555555555544444433433 333344455555555555555554443
No 455
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=54.23 E-value=1.8e+02 Score=26.74 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhc
Q 004249 352 YSTALKYYHMLEANAGVHNDGCLHLKIAECSLALK 386 (765)
Q Consensus 352 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 386 (765)
+++.++-+++++-.+...++++.|+..|.|+.-..
T Consensus 158 ~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~A 192 (199)
T PF04090_consen 158 YQQLIERIDELVLSPPYMDDGELWFIRGMCHLWIA 192 (199)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 55555555555555445578889998888877654
No 456
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=54.17 E-value=3.6e+02 Score=30.25 Aligned_cols=138 Identities=14% Similarity=0.018 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHH
Q 004249 282 VLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHM 361 (765)
Q Consensus 282 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 361 (765)
.+.-+++.+..+++..-....--.....+++-.|+++.|+.++-+. .. .....+++.++..+ .|-..-.-..-..
T Consensus 239 ~L~~LQ~~i~~~Ge~~F~~~~~p~~Yf~~LlLtgqFE~AI~~L~~~-~~--~~~dAVH~AIaL~~--~gLL~~~~~~~~~ 313 (613)
T PF04097_consen 239 TLEDLQKLILKYGESHFNAGSNPLLYFQVLLLTGQFEAAIEFLYRN-EF--NRVDAVHFAIALAY--YGLLRVSDSSSAP 313 (613)
T ss_dssp -HHHHHHHHHHH-GGGCTT------HHHHHHHTT-HHHHHHHHHT---T---HHHHHHHHHHHHH--TT-----------
T ss_pred cHHHHHHHHHHhchhhcccchhHHHHHHHHHHHhhHHHHHHHHHhh-cc--CcccHHHHHHHHHH--cCCCCCCCccccc
Confidence 3444455444444322222222233445577889999999988872 11 11122344444333 2222111111133
Q ss_pred HHhccCCCCCH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHc-CCCHH-HHHHHHHHHHHcCCHHHHHH
Q 004249 362 LEANAGVHNDG------CLHLKIAECSLALKEREKSIIYFYKALQIL-EDNID-ARLTLASLLLEDAKDEEAIS 427 (765)
Q Consensus 362 ~~~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~-~~~~l~~~~~~~g~~~~A~~ 427 (765)
.+.. .+.++ ........ .+...++.+|.++|--+-... |.... .+..+..+....++++.=+-
T Consensus 314 lls~--~~~~~~~ln~arLI~~Y~~-~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG 384 (613)
T PF04097_consen 314 LLSV--DPGDPPPLNFARLIGQYTR-SFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLG 384 (613)
T ss_dssp ---------------HHHHHHHHHH-TTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHE
T ss_pred eeee--cCCCCCCcCHHHHHHHHHH-HHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCC
Confidence 3333 33221 11111222 234567888888776543322 22222 23335555566665555443
No 457
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=53.47 E-value=1.6e+02 Score=28.69 Aligned_cols=137 Identities=9% Similarity=-0.033 Sum_probs=75.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCC----CCHHHHHHHHHH--HHHcCCH----HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249 133 LVHDALGNTAKAMGCYWLAACYKQ----KDSSLWKLIFPW--LIEQGDT----TWAMSCLSEAVKADPNDFKLKFHLASL 202 (765)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~~~la~~--~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (765)
..+...++|++=-..+.+..+... .... |...... ....... ..-...++.-++..|++..++..+|..
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 455667888877777777654321 1222 2111111 1111111 235667777778889888888888877
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249 203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A 282 (765)
+....=--.....- +......+.... .-.+.|...+.+++.++|.... ++..+..+-...|.++=-
T Consensus 87 ~~~~Aw~~RG~~~A------~~V~~~~W~~~~------~~~d~A~~~ll~A~~l~pr~~~--A~~~m~~~s~~fgeP~WL 152 (277)
T PF13226_consen 87 WVHRAWDIRGSGYA------STVTEAQWLGAH------QACDQAVAALLKAIELSPRPVA--AAIGMINISAYFGEPDWL 152 (277)
T ss_pred HHHHHHHHHccchh------cccCHHHHHHHH------HHHHHHHHHHHHHHhcCCCchH--HHHHHHHHHhhcCCchHH
Confidence 76532111100000 001112222211 2257799999999999999877 556777777777776643
Q ss_pred HH
Q 004249 283 LK 284 (765)
Q Consensus 283 ~~ 284 (765)
..
T Consensus 153 ~~ 154 (277)
T PF13226_consen 153 AA 154 (277)
T ss_pred HH
Confidence 33
No 458
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.45 E-value=1.4e+02 Score=25.15 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHhcCCCCccHHHHH-HHHHHHHhcCChhH
Q 004249 246 SVDILEDYLKGHP-TEADFGVIDLLASMLVQM----NAYDRVLKHIELVDLVYYSGKELLLALKI-KAGICHIQLGNTDK 319 (765)
Q Consensus 246 A~~~~~~~~~~~p-~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ 319 (765)
-...|+..+.... .+.....|.....-.... +.-..-..++++++..+..+.....+..+ .+-..|.. ....
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~--~~~~ 81 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD--LSSD 81 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT--TBSH
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH--HccC
Confidence 3445555555544 333333444444443332 23444556666776665543322222222 12222222 2236
Q ss_pred HHHHHHhhccc-CCCChHHHHHHHHHHHHccccHHHHHHHHHHH
Q 004249 320 AEILLTAIHWE-NVSDHAESINEIADLFKNRELYSTALKYYHML 362 (765)
Q Consensus 320 A~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 362 (765)
+..+|..+... -....+..|...|..+...|++++|.++|+..
T Consensus 82 ~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 82 PREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 66666655432 22445666666677777777777777776654
No 459
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=53.38 E-value=1.8e+02 Score=26.66 Aligned_cols=28 Identities=14% Similarity=-0.026 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 004249 129 HILGLVHDALGNTAKAMGCYWLAACYKQ 156 (765)
Q Consensus 129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p 156 (765)
..+-......|+++.|-++|--.+...+
T Consensus 45 ~~lLh~~llr~d~~rA~Raf~lLiR~~~ 72 (199)
T PF04090_consen 45 TDLLHLCLLRGDWDRAYRAFGLLIRCPE 72 (199)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHcCCC
Confidence 3333344444555555555555554433
No 460
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=51.93 E-value=30 Score=21.31 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=21.2
Q ss_pred hHHHhHH--HHHHHhc-----hHHHHHHHHHHHHhh
Q 004249 682 EALYNIA--RAYHHVG-----LVSLAASYYEKVLAM 710 (765)
Q Consensus 682 ~~~~~lg--~~~~~~g-----~~~~A~~~y~k~l~~ 710 (765)
++.|++| .+|..-. +..+|+.+|+++.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 5778888 5444443 468999999998775
No 461
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=50.48 E-value=27 Score=20.98 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=22.8
Q ss_pred hHHHhHHHHHHHh----chHHHHHHHHHHHHhh
Q 004249 682 EALYNIARAYHHV----GLVSLAASYYEKVLAM 710 (765)
Q Consensus 682 ~~~~~lg~~~~~~----g~~~~A~~~y~k~l~~ 710 (765)
.+.+++|..|..- .+..+|+.+|+++-+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 5678899888643 2788999999998764
No 462
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=49.38 E-value=45 Score=24.84 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVI 118 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 118 (765)
....+..+|..+=..|++.+|+.+|++++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455566666667777777666665544
No 463
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=49.24 E-value=2.8e+02 Score=27.59 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=18.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG 207 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 207 (765)
..+++.+.++..++.+...|--.+.++..+.++.+.|
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG 147 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC
Confidence 3344445555555555555544455555555555555
No 464
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=48.67 E-value=5.8 Score=43.09 Aligned_cols=21 Identities=0% Similarity=-0.232 Sum_probs=10.0
Q ss_pred cccccCChhhHHHHHHHHHHh
Q 004249 543 IPCNTTDPKLWFDGVRFMVKL 563 (765)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~l~~ 563 (765)
+++...--++|...-+++...
T Consensus 323 ~~f~LspEdEA~q~A~~a~~~ 343 (536)
T PF04348_consen 323 YQFGLSPEDEARQAAQKAFQD 343 (536)
T ss_dssp EE----HHHHHHHHHHHHHHT
T ss_pred EEEeCCcHHHHHHHHHHHHhc
Confidence 445555556666666666553
No 465
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=48.60 E-value=5.8 Score=43.08 Aligned_cols=99 Identities=14% Similarity=0.034 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhC-CCchHHHHHHHHHHHcCCHHHHHHHHHHH--hccCCC-CHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIR--LEE-ELPNSYHILGLVHDALGNTAKAMGCYWLA--ACYKQK-DSSL 161 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--~~~~p~-~~~~ 161 (765)
+.....++.-+..++..|++..|..++.++-. +.| .........+.+....|+++.|+..+... ..+.+. ....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 33445566777888999999999998887752 223 22355666778888888899988888741 111111 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 162 WKLIFPWLIEQGDTTWAMSCLSEAV 186 (765)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al 186 (765)
+...+.++...|++-+|...+-.+-
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~ 125 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALD 125 (536)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4456777888888777776654443
No 466
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=47.92 E-value=73 Score=34.63 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHH
Q 004249 660 HQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAA 739 (765)
Q Consensus 660 ~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~ 739 (765)
...+.++.+....+......+....+--|..++..|.++.|-..|++....+|+ +++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~ 77 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND-----------------------EAR 77 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc-----------------------chH
Confidence 345677777888877777777788899999999999999999999999999874 455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh
Q 004249 740 YNLHLIYKKSGAVDLARQVLRDH 762 (765)
Q Consensus 740 ~nl~~iy~~~g~~~~A~~~l~k~ 762 (765)
+--+.-.++.|-.+.|..++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~ 100 (578)
T PRK15490 78 YEYARRLYNTGLAKDAQLILKKV 100 (578)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHh
Confidence 66666777778888888877753
No 467
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=46.05 E-value=47 Score=19.90 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=18.3
Q ss_pred ChhhHHHHHHHHHHhCCCchhhhHHHHH
Q 004249 549 DPKLWFDGVRFMVKLHPHRLTTWNRYYK 576 (765)
Q Consensus 549 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 576 (765)
+++.|...|++.+...|+ +..|..++.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 467788888888887765 556655543
No 468
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=45.45 E-value=58 Score=24.48 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIR 119 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 119 (765)
....++.+|...=..|+|++|+.+|.+++.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345566667777777777777777766554
No 469
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.81 E-value=72 Score=29.26 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249 177 WAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP 224 (765)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 224 (765)
..++..++.+...| ++.++..++.++...|+.++|.....++....|
T Consensus 129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34445555555555 566677777777777777777777777777777
No 470
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.82 E-value=3.5e+02 Score=27.10 Aligned_cols=191 Identities=9% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHH---HHHHHHHcCCHHHHHHhcCCCCCccccccCc---------------------ccch
Q 004249 391 SIIYFYKALQILEDNIDARLT---LASLLLEDAKDEEAISLLTPPMSLENKYVNS---------------------DKTH 446 (765)
Q Consensus 391 A~~~~~~al~~~p~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------------~~~~ 446 (765)
+...|++..+.-|++....+. -|.++...|++.+....+..+...-....+. +...
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Q ss_pred hhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249 447 AWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGY 526 (765)
Q Consensus 447 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 526 (765)
..+..+.+.+.+|.-|....+++.|.-.+.++.. +-+.|.+.+.+.++..
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~-----------------------------rQ~~AKe~~~~ei~ka- 169 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANE-----------------------------RQRRAKEFYYEEVQKA- 169 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHH-
Q ss_pred CCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCch
Q 004249 527 GKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPI 606 (765)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 606 (765)
..-.+..-...+++.-..--.++++ ..+.++...+....+. .++..-
T Consensus 170 -----------~~e~ds~k~~~N~~~~~ae~s~~i~------n~Y~ny~~~yea~~~l----------------~npYv~ 216 (449)
T COG3014 170 -----------IKEIDSSKHNINMERSRAEVSEILN------NTYSNYLDKYEAYQGL----------------LNPYVS 216 (449)
T ss_pred -----------HHHHHhccCCCchhHHHHHHHHHHH------HHHHHHHHHHHhhccc----------------chHHHH
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHH
Q 004249 607 IISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVG 644 (765)
Q Consensus 607 ~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 644 (765)
++.|..+...|++.++...+..++-+.|+...+--..+
T Consensus 217 Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~ 254 (449)
T COG3014 217 YLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYL 254 (449)
T ss_pred HHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhc
No 471
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=43.71 E-value=2e+02 Score=24.34 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEE 122 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 122 (765)
..-+..|..+...|..++.+++..+.....+
T Consensus 3 ~kkLmeAK~~ildG~V~qGveii~k~v~Ssn 33 (161)
T PF09205_consen 3 LKKLMEAKERILDGDVKQGVEIIEKTVNSSN 33 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHcCcCC
Confidence 3446678888999999999999999877654
No 472
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.86 E-value=42 Score=25.03 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004249 94 MLGDASLHYALGRYEEAISVLHEVIR 119 (765)
Q Consensus 94 ~~~~a~~~~~~g~~~~A~~~~~~~l~ 119 (765)
++.+|...=..|+|++|+.+|..+++
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHH
Confidence 33444444444445555554444443
No 473
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=42.74 E-value=3e+02 Score=28.95 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHH
Q 004249 267 DLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLF 346 (765)
Q Consensus 267 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~ 346 (765)
-.++.......+.+++..++-+.... +............+...++..|..++++.++..=+.-+.-.+.-.+..+-..+
T Consensus 70 d~fvn~~~~~~~~d~~~~~L~k~R~s-~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~f 148 (429)
T PF10037_consen 70 DIFVNNVESKDDLDEVEDVLYKFRHS-PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHF 148 (429)
T ss_pred HHHHhhcCCHhHHHHHHHHHHHHHcC-cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHH
Confidence 34455555555666677777666554 22221222333466777899999999999998755444344566777888899
Q ss_pred HccccHHHHHHHHHHHHhccCCCCCH
Q 004249 347 KNRELYSTALKYYHMLEANAGVHNDG 372 (765)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~~~~~~~~ 372 (765)
++.|+|..|.++...+.... ..+++
T Consensus 149 l~~~~~~~A~~V~~~~~lQe-~~~~~ 173 (429)
T PF10037_consen 149 LKKGNYKSAAKVATEMMLQE-EFDNP 173 (429)
T ss_pred hhcccHHHHHHHHHHHHHhh-ccCCc
Confidence 99999999999998777553 34443
No 474
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.51 E-value=79 Score=35.19 Aligned_cols=110 Identities=15% Similarity=0.007 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC----chHHHHHHHHHHH--cCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEEL----PNSYHILGLVHDA--LGNTAKAMGCYWLAACYKQKDSSLWKLI 165 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~~~l 165 (765)
......++..++.+++.+|.--|..++..-|.+ .......+.|+.. .|++..++.-..-++...|....++...
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 344566788888889999887788877777733 2445556666654 5688899988888888889888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249 166 FPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201 (765)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 201 (765)
+.+|...+.++-|++-+.-.....|.++.+......
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~e 169 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEE 169 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence 899998888888888877777778888655443333
No 475
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.92 E-value=1.1e+03 Score=32.39 Aligned_cols=448 Identities=12% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHcCC
Q 004249 96 GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYK-QKDSSLWKLIFPWLIEQGD 174 (765)
Q Consensus 96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~ 174 (765)
..|..+.+.|.+++|...|+++-...-.....|..-...+....-..=|.+.-+--.-.+ .....-...+-.+..+..+
T Consensus 2487 ~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~~~llle~aWrlsd 2566 (3550)
T KOG0889|consen 2487 MVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFGKHEGNYELLLECAWRLSD 2566 (3550)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeehhccCCc
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH-------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004249 175 TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA-------------ADVYRQMVQLCPENIEALKMGAKLYQKSG 241 (765)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-------------~~~~~~al~~~p~~~~~~~~la~~~~~~g 241 (765)
+..-...+.+.....++.+.....+.++|...-+.++. ...+++..++-......+..+-......-
T Consensus 2567 w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~Qqiv 2646 (3550)
T KOG0889|consen 2567 WNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIV 2646 (3550)
T ss_pred chhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHH
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 004249 242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAE 321 (765)
Q Consensus 242 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 321 (765)
...+|...+......+-.+....+.-....+..-..+..---..+...-.. ......++..+...|....-+..+.
T Consensus 2647 El~Ea~~I~s~l~~~n~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl----~~WRq~~y~~I~~~~~~~~~~~~~~ 2722 (3550)
T KOG0889|consen 2647 ELQEAAQIYSDLNDGNVQNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDL----ITWRQHAYSMINKAYLPLVPYKQNA 2722 (3550)
T ss_pred HHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhcCCCcchhHHHHHHH----HHHHHHHHHHHHHHhcccchhhhcc
Q ss_pred HHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 322 ILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQI 401 (765)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 401 (765)
.--..+.... ...+.+....|.+....|-++.++..+.++..++.-+-........-++....++..+-...++-+-..
T Consensus 2723 ~ns~~~~~Gy-he~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sT 2801 (3550)
T KOG0889|consen 2723 SNSNNLYRGY-HELAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIEST 2801 (3550)
T ss_pred CCcchHHHhH-HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcc
Q ss_pred cCCCH------HHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHh--------cch
Q 004249 402 LEDNI------DARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA--------KGM 467 (765)
Q Consensus 402 ~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~ 467 (765)
+-.+. +.....|....+.|+.++|.+.|..|.+.+... +.+|..-|..... ..-
T Consensus 2802 Nl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l------------~KaW~~Wg~y~~~~f~~e~~ni~~ 2869 (3550)
T KOG0889|consen 2802 NLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGL------------GKAWAEWGKYLDNRFNKEPVNISF 2869 (3550)
T ss_pred cHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhh------------HHHHHHHHHHHHHHHhccCcccHH
Q ss_pred hHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhccccc
Q 004249 468 IEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNT 547 (765)
Q Consensus 468 ~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (765)
-..|+..|.++. ..-.+..+.-.++.+++ .=.+++|.....+++...-...|.-....+.-...+....
T Consensus 2870 a~~avsCyLqA~----------~~~~~skaRk~iakvLw-Lls~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~ 2938 (3550)
T KOG0889|consen 2870 ACNAVSCYLQAA----------RLYNSSKARKLIAKVLW-LLSFDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSK 2938 (3550)
T ss_pred HHHHHHHHHHHh----------ccccchhhHHHHHHHHH-HHHhccccchHHHHHHHhhccCCchhhhhhhHHHHhhccc
Q ss_pred CChhhHHHHHHHHHHhCCCchhhh
Q 004249 548 TDPKLWFDGVRFMVKLHPHRLTTW 571 (765)
Q Consensus 548 g~~~~A~~~~~~~l~~~p~~~~~~ 571 (765)
++...+...+.+.-+.+|.....+
T Consensus 2939 ~e~~~~~~iL~kia~~yPQal~f~ 2962 (3550)
T KOG0889|consen 2939 KEAKLVRLILIKIAKSYPQALYFP 2962 (3550)
T ss_pred cchhHHHHHHHHHHHhchHHHHHH
No 476
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=41.72 E-value=31 Score=21.11 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 004249 738 AAYNLHLIYKKSGAVDLARQVLRDHCT 764 (765)
Q Consensus 738 a~~nl~~iy~~~g~~~~A~~~l~k~l~ 764 (765)
|.+-|+++|..+|+ +++.+.|..++.
T Consensus 2 A~lgLGl~~aGs~~-~~~~~~L~~~l~ 27 (35)
T PF01851_consen 2 AILGLGLIYAGSGN-EEVLDLLRPYLS 27 (35)
T ss_dssp HHHHHHHHTTTT---HHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 56789999999988 688898888763
No 477
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.71 E-value=4.2e+02 Score=27.60 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 266 IDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 266 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
+..-|.+.+.+|+-++|.+.++.+...
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 335567777788888888888777655
No 478
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.49 E-value=68 Score=24.03 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIR 119 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 119 (765)
....+..+|..+=..|+|++|+.+|.+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344556667777777777777777777654
No 479
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.62 E-value=2.3e+02 Score=26.77 Aligned_cols=22 Identities=18% Similarity=-0.025 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHHHHHHhhCCCC
Q 004249 615 MISHHQDAAREYLEAYKLLPEN 636 (765)
Q Consensus 615 ~~~~~~~A~~~~~~a~~~~p~~ 636 (765)
..++...|+.++++|+.++|+-
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 4567889999999999999973
No 480
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=40.55 E-value=45 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=20.8
Q ss_pred HHhHHHHHHHhchHHHHHHHHHHHHhhh
Q 004249 684 LYNIARAYHHVGLVSLAASYYEKVLAMY 711 (765)
Q Consensus 684 ~~~lg~~~~~~g~~~~A~~~y~k~l~~~ 711 (765)
+.+.|.-..+.|++++|+.+|.++++.-
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3455666677888888888888887764
No 481
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=40.38 E-value=3.4e+02 Score=26.01 Aligned_cols=57 Identities=9% Similarity=0.099 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH-cC--CCHHHHHHHHHHHHH-cCCHHHHHHhcCC
Q 004249 375 HLKIAECSLALKEREKSIIYFYKALQI-LE--DNIDARLTLASLLLE-DAKDEEAISLLTP 431 (765)
Q Consensus 375 ~~~la~~~~~~g~~~~A~~~~~~al~~-~p--~~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 431 (765)
+..+|.+..+.++|++.+.+.+++++. +| -+.+-+..+..+|.. .|....+++.+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 345778888888999999999888886 43 455667777777765 4777778777765
No 482
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.08 E-value=1e+02 Score=28.25 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 353 STALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 353 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
+..++..++.+.. .| ++.++..++.++...|+.++|.....++....|.
T Consensus 128 ~~~~~~a~~~l~~--~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRR--RP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHh--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3444455555555 45 7788888899999999999999999999999883
No 483
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=38.86 E-value=94 Score=22.59 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIR 119 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~ 119 (765)
.++.+|..+=..|++++|+.+|.+++.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445556666666666666666665543
No 484
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.62 E-value=3.8e+02 Score=26.11 Aligned_cols=102 Identities=9% Similarity=0.083 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH-HH
Q 004249 193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN---IEA---LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF-GV 265 (765)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~ 265 (765)
.+++.++|..|.+.++.+.+.+++.+.++..-.. .++ ...+|.+|..+.-.++.++....+++...+.... +.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 4678888888888888888888777766543211 222 3455666666666666677666666665443221 11
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 004249 266 IDLLASMLVQMNAYDRVLKHIELVDLVYY 294 (765)
Q Consensus 266 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 294 (765)
-...|...+...++.+|-..+...+..+.
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 12455556666778888877777766543
No 485
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=38.60 E-value=4.9e+02 Score=27.33 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChh--hHHHHHHHHHHHHHhhhc------------HHHHHHHHH
Q 004249 454 IKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHE--EHRLLIIDLCKTLASLHR------------YEDAIKIIN 519 (765)
Q Consensus 454 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~~~~~~~~------------~~~A~~~~~ 519 (765)
-.+..|.-+...|++.+|+..|+.++... .|-.+-... +...-++.++.-|.-.=+ .++....++
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i-~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lE 284 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSI-PLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLE 284 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh-heeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 34566777889999999999999988532 211111111 223333333333321111 122222222
Q ss_pred HHHHhccC-CCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchh
Q 004249 520 LILKLGYG-KFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLT 569 (765)
Q Consensus 520 ~al~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 569 (765)
-+.=...- ..|.........+....++.++|..|...-+++|++.|....
T Consensus 285 LAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 285 LAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 22211111 123333333344444899999999999999999999987643
No 486
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.30 E-value=51 Score=30.96 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=16.4
Q ss_pred HhCCHHHHHHHHHHHHHhCCCC
Q 004249 205 ELGNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~ 226 (765)
..++...|+.++++++.++|+.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 3456778888888888888765
No 487
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=37.65 E-value=2.5e+02 Score=23.62 Aligned_cols=48 Identities=6% Similarity=-0.091 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004249 259 TEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAG 308 (765)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (765)
-.|....+..++..|...|++..|+.+.+...+.++ -+.+...|..+-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~--I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP--IPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Confidence 334455666777777777777777777777777765 333445544443
No 488
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=36.88 E-value=4.5e+02 Score=26.38 Aligned_cols=133 Identities=13% Similarity=0.035 Sum_probs=83.7
Q ss_pred HHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcc-----cccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHh
Q 004249 505 LASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIP-----CNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVS 579 (765)
Q Consensus 505 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 579 (765)
++..+-.+++...+.+++.... .-|..+......++ -..-+|..=...|.-+....|+-+..+|.-..+..
T Consensus 266 lW~r~lI~eg~all~rA~~~~~----pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~ 341 (415)
T COG4941 266 LWDRALIDEGLALLDRALASRR----PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAM 341 (415)
T ss_pred hhhHHHHHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHH
Confidence 4445668889999999998763 22333222222122 22456666677788888888887777665544443
Q ss_pred hhhhhhhHHHHHHHHHHHh--cCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHH
Q 004249 580 RFEKIFSKHAKLLRNVRAK--YRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCV 643 (765)
Q Consensus 580 ~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 643 (765)
..|-. ........+... -......+-..|..+...|.-.+|...|.+++.+.++.+...+..
T Consensus 342 ~~Gp~--agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 342 REGPA--AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred hhhHH--hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 33332 333333333332 223334456778899999999999999999999999877655433
No 489
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.02 E-value=4.6e+02 Score=26.21 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249 194 KLKFHLASLYVELGNFQRAADVYRQMV 220 (765)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~al 220 (765)
+++...|..|.+.|+-+.|.+.+.+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444555555555555555555444443
No 490
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.86 E-value=2.8e+02 Score=30.38 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=21.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004249 165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217 (765)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (765)
.+..+-..|..++|-.+|++.+..+|+ +.++..+.-+.+.|-...|...++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 48 KAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 333344444444444444444444443 333444444444444444444433
No 491
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.83 E-value=89 Score=23.32 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004249 106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY 154 (765)
Q Consensus 106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 154 (765)
+.++|+.++++++..+ ..|++++|+.+|..+++.
T Consensus 2 ~l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 3567777777776554 458899999999888764
No 492
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=34.72 E-value=6.5e+02 Score=27.60 Aligned_cols=139 Identities=14% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHH
Q 004249 141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG--NFQRAADVYRQ 218 (765)
Q Consensus 141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~ 218 (765)
|..|.++++.++...|.- ++..-|+..+|+..+++-.. +....-.....+.++...+ .-..-..+|+.
T Consensus 300 yk~a~KYLR~al~s~p~v---------lLl~~~~l~eal~~~e~~c~-~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~ 369 (547)
T PF14929_consen 300 YKYAVKYLRLALQSNPPV---------LLLIGGRLKEALNELEKFCI-SSTCALPIRLRAHLLEYFDQNNSSVLSSCLED 369 (547)
T ss_pred HHHHHHHHHHHhcCCCCe---------EEeccccHHHHHHHHHHhcc-CCCccchHHHHHHHHHHhCcccHHHHHHHHHH
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Q 004249 219 MVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ-MNAYDRVLKHIELVDLV 292 (765)
Q Consensus 219 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~ 292 (765)
+++.+|........+...+...-...+-++...--+...|..+ +|..++.++.+ .++++.-.+....+++.
T Consensus 370 ~~~~~P~~~~~le~l~~~~~~~~~~~~Lle~i~~~l~~~~s~~---iwle~~~~~l~~~~~~~~~~e~~~~~l~v 441 (547)
T PF14929_consen 370 CLKKDPTMSYSLERLILLHQKDYSAEQLLEMIALHLDLVPSHP---IWLEFVSCFLKNPSRFEDKEEDHKSALKV 441 (547)
T ss_pred HhcCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCch---HHHHHHHHHHhccccccccHHHHHHHHhc
No 493
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=34.72 E-value=7.4 Score=33.60 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=32.9
Q ss_pred HHhccHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249 383 LALKEREKSIIYFYKALQIL-EDNIDARLTLASLLLEDAKDEEAISLLTPPMS 434 (765)
Q Consensus 383 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (765)
...+.+.....+++.++..+ ..+......++.+|.+.+..+....+++....
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~ 70 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN 70 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc
Confidence 34455666666777777554 34466667777788777777777777774444
No 494
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=34.66 E-value=8.8e+02 Score=29.14 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 004249 95 LGDASLHYALGRYEEAISVLHEV 117 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~ 117 (765)
+.....++..++|.+|....++-
T Consensus 681 La~vr~~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556778888899888887764
No 495
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=34.28 E-value=4.5e+02 Score=25.65 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 004249 266 IDLLASMLVQMNAYDRVLKHIELVDLVY 293 (765)
Q Consensus 266 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 293 (765)
+-.-++.+.-..+|..|++.+++.++..
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL 65 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSL 65 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777788999999999888874
No 496
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=34.21 E-value=51 Score=24.89 Aligned_cols=28 Identities=21% Similarity=0.056 Sum_probs=21.9
Q ss_pred HhHHHHHHHhchHHHHHHHHHHHHhhhh
Q 004249 685 YNIARAYHHVGLVSLAASYYEKVLAMYQ 712 (765)
Q Consensus 685 ~~lg~~~~~~g~~~~A~~~y~k~l~~~~ 712 (765)
.+.|-.+...|+.++|+.+|++++..=.
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 4455556677999999999999988754
No 497
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=33.97 E-value=98 Score=23.11 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=23.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhCCCChHHH
Q 004249 610 GHQFTMISHHQDAAREYLEAYKLLPENPLIN 640 (765)
Q Consensus 610 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 640 (765)
|......-.|.+|++.+.+++...|+++...
T Consensus 20 gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 20 GNAEDAITNYKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 5555556667788888888999999987644
No 498
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=33.62 E-value=1.9e+02 Score=24.31 Aligned_cols=42 Identities=10% Similarity=-0.055 Sum_probs=24.4
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249 355 ALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFY 396 (765)
Q Consensus 355 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 396 (765)
...+|..+...+.....+..|...|..+...|++.+|.+.|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555443344455566666666666666666666664
No 499
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=33.47 E-value=1.6e+02 Score=23.91 Aligned_cols=46 Identities=22% Similarity=0.008 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249 128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173 (765)
Q Consensus 128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 173 (765)
....|.+....|++..|.+...++.+..+..+-.+..-+.+...+|
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3344555566666666666666665554333344444444444444
No 500
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=33.46 E-value=5.6e+02 Score=26.48 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=34.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHH--HHhCCHHHHHHHHHH
Q 004249 165 IFPWLIEQGDTTWAMSCLSEAVKADPND-----FKLKFHLASLY--VELGNFQRAADVYRQ 218 (765)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~--~~~g~~~~A~~~~~~ 218 (765)
.+..+++.++|..|...|..+....+.. ...+..++.+| ...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4446777888888888888877764321 23334444443 456677888888875
Done!