Query 004249
Match_columns 765
No_of_seqs 1250 out of 4826
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 19:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 9.6E-42 3.3E-46 358.4 45.2 385 96-510 4-388 (388)
2 2xpi_A Anaphase-promoting comp 100.0 1E-40 3.5E-45 372.3 42.3 459 89-579 82-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.6E-40 1.2E-44 346.4 43.4 378 130-541 4-381 (388)
4 2xpi_A Anaphase-promoting comp 100.0 8.6E-41 2.9E-45 373.0 36.9 487 123-647 82-594 (597)
5 3fp2_A TPR repeat-containing p 100.0 2.7E-36 9.1E-41 332.0 33.7 445 159-713 25-494 (537)
6 3fp2_A TPR repeat-containing p 100.0 2.3E-35 7.9E-40 324.5 37.2 409 90-525 24-492 (537)
7 2gw1_A Mitochondrial precursor 100.0 1.6E-35 5.6E-40 323.9 34.9 420 90-537 5-487 (514)
8 2gw1_A Mitochondrial precursor 100.0 7.3E-35 2.5E-39 318.7 35.6 422 124-576 5-491 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 3.5E-33 1.2E-37 299.7 40.2 323 87-418 22-375 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 1.9E-33 6.4E-38 301.8 36.1 334 107-461 8-372 (450)
11 3ieg_A DNAJ homolog subfamily 100.0 1.6E-32 5.5E-37 284.8 41.2 322 90-420 2-354 (359)
12 3ieg_A DNAJ homolog subfamily 100.0 1.6E-31 5.6E-36 277.2 37.6 322 124-466 2-354 (359)
13 4g1t_A Interferon-induced prot 100.0 3E-31 1E-35 286.5 35.1 395 194-644 52-471 (472)
14 4g1t_A Interferon-induced prot 100.0 4.5E-31 1.5E-35 285.1 31.4 391 125-572 51-468 (472)
15 3hym_B Cell division cycle pro 100.0 3.8E-30 1.3E-34 263.5 31.2 299 91-423 22-322 (330)
16 3hym_B Cell division cycle pro 100.0 5.1E-30 1.8E-34 262.6 30.3 255 93-352 58-321 (330)
17 1fch_A Peroxisomal targeting s 100.0 1.3E-29 4.4E-34 264.0 29.6 313 104-434 14-358 (368)
18 2ooe_A Cleavage stimulation fa 100.0 1.2E-27 4E-32 261.5 39.9 427 114-568 2-497 (530)
19 2xm6_A Protein corresponding t 100.0 1.8E-26 6.2E-31 249.3 47.7 403 110-568 26-472 (490)
20 2xm6_A Protein corresponding t 100.0 1.4E-26 4.8E-31 250.2 46.3 386 91-525 39-468 (490)
21 1fch_A Peroxisomal targeting s 100.0 6.4E-29 2.2E-33 258.7 25.4 294 100-401 34-359 (368)
22 4eqf_A PEX5-related protein; a 100.0 1.1E-27 3.8E-32 249.0 27.6 283 146-435 48-356 (365)
23 2ooe_A Cleavage stimulation fa 100.0 1.1E-25 3.6E-30 246.0 41.6 436 148-636 2-496 (530)
24 4eqf_A PEX5-related protein; a 100.0 9.2E-28 3.2E-32 249.5 20.9 266 127-399 67-354 (365)
25 3cv0_A Peroxisome targeting si 100.0 5.3E-26 1.8E-30 232.3 31.2 284 126-439 22-319 (327)
26 2h6f_A Protein farnesyltransfe 100.0 2.1E-26 7.1E-31 236.1 26.5 259 117-419 89-366 (382)
27 2h6f_A Protein farnesyltransfe 100.0 1E-26 3.4E-31 238.5 23.9 223 85-314 90-322 (382)
28 3cv0_A Peroxisome targeting si 99.9 2.4E-26 8.2E-31 234.8 25.2 234 90-329 20-268 (327)
29 2pl2_A Hypothetical conserved 99.9 2.9E-25 9.9E-30 210.9 20.6 194 93-289 7-211 (217)
30 2pl2_A Hypothetical conserved 99.9 1.5E-24 5.2E-29 205.9 23.7 199 122-327 2-211 (217)
31 3mkr_A Coatomer subunit epsilo 99.9 5.1E-24 1.7E-28 211.6 27.7 279 98-429 6-288 (291)
32 3e4b_A ALGK; tetratricopeptide 99.9 2.9E-24 1E-28 227.9 26.2 342 95-480 7-386 (452)
33 3u4t_A TPR repeat-containing p 99.9 2.2E-24 7.5E-29 213.8 23.4 256 93-384 5-267 (272)
34 1xi4_A Clathrin heavy chain; a 99.9 2.1E-21 7E-26 216.8 49.2 381 98-557 992-1378(1630)
35 3u4t_A TPR repeat-containing p 99.9 3E-24 1E-28 212.8 23.9 254 125-420 3-269 (272)
36 3mkr_A Coatomer subunit epsilo 99.9 9.9E-24 3.4E-28 209.5 26.9 256 133-439 7-268 (291)
37 3uq3_A Heat shock protein STI1 99.9 1E-23 3.5E-28 207.1 26.6 239 159-415 5-256 (258)
38 3uq3_A Heat shock protein STI1 99.9 2E-23 6.9E-28 205.0 25.6 226 90-330 4-236 (258)
39 3e4b_A ALGK; tetratricopeptide 99.9 7.7E-24 2.6E-28 224.7 24.0 381 129-563 7-421 (452)
40 3sf4_A G-protein-signaling mod 99.9 8.4E-24 2.9E-28 223.2 22.5 301 90-424 8-365 (406)
41 3sf4_A G-protein-signaling mod 99.9 7.4E-24 2.5E-28 223.6 21.1 267 91-390 47-365 (406)
42 1xi4_A Clathrin heavy chain; a 99.9 2.6E-20 9E-25 208.0 46.7 433 227-761 985-1441(1630)
43 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.7E-22 5.7E-27 200.6 20.9 248 104-395 18-269 (275)
44 4a1s_A PINS, partner of inscut 99.9 6.9E-23 2.4E-27 216.5 19.3 283 88-404 45-375 (411)
45 4a1s_A PINS, partner of inscut 99.9 1.9E-22 6.5E-27 213.2 22.6 237 92-328 87-370 (411)
46 3ro2_A PINS homolog, G-protein 99.9 3E-22 1E-26 205.1 22.4 283 89-404 3-335 (338)
47 2q7f_A YRRB protein; TPR, prot 99.9 3E-22 1E-26 194.6 20.9 217 89-311 21-237 (243)
48 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.4E-21 4.6E-26 194.0 23.9 248 134-429 14-269 (275)
49 3ro2_A PINS homolog, G-protein 99.9 5.8E-22 2E-26 203.0 21.9 275 127-437 7-334 (338)
50 3vtx_A MAMA; tetratricopeptide 99.9 2.8E-21 9.6E-26 178.6 23.4 168 93-260 7-174 (184)
51 2q7f_A YRRB protein; TPR, prot 99.9 1.4E-21 4.6E-26 190.0 21.9 215 125-346 23-237 (243)
52 2ho1_A Type 4 fimbrial biogene 99.9 1.1E-20 3.7E-25 184.7 27.8 207 91-303 37-245 (252)
53 1ouv_A Conserved hypothetical 99.9 3.4E-20 1.2E-24 183.5 30.3 229 122-405 3-255 (273)
54 3vtx_A MAMA; tetratricopeptide 99.9 4.7E-21 1.6E-25 177.1 22.5 168 123-292 3-170 (184)
55 1ouv_A Conserved hypothetical 99.9 3.8E-20 1.3E-24 183.1 30.6 223 91-331 6-252 (273)
56 2vq2_A PILW, putative fimbrial 99.9 2.8E-20 9.5E-25 178.2 28.6 203 88-292 5-211 (225)
57 3ulq_A Response regulator aspa 99.9 7.9E-21 2.7E-25 198.3 25.8 313 88-404 9-371 (383)
58 2vq2_A PILW, putative fimbrial 99.9 2.4E-20 8.2E-25 178.7 25.6 210 121-337 4-217 (225)
59 2ond_A Cleavage stimulation fa 99.9 1.2E-20 4.1E-25 190.0 24.4 222 108-331 33-271 (308)
60 4abn_A Tetratricopeptide repea 99.9 2.3E-21 8E-26 207.0 20.1 211 107-324 84-315 (474)
61 2ho1_A Type 4 fimbrial biogene 99.9 1.5E-20 5E-25 183.8 23.5 201 125-331 37-239 (252)
62 2ond_A Cleavage stimulation fa 99.9 2E-20 6.9E-25 188.3 24.5 252 142-413 33-304 (308)
63 4e6h_A MRNA 3'-END-processing 99.9 4E-18 1.4E-22 186.0 42.9 437 106-568 47-575 (679)
64 4i17_A Hypothetical protein; T 99.9 2.3E-19 7.8E-24 172.2 27.1 206 92-310 8-223 (228)
65 4abn_A Tetratricopeptide repea 99.9 3E-20 1E-24 198.4 22.6 219 139-398 82-318 (474)
66 4gyw_A UDP-N-acetylglucosamine 99.8 3.2E-20 1.1E-24 205.3 20.1 170 121-292 5-174 (723)
67 4gyw_A UDP-N-acetylglucosamine 99.8 5.6E-20 1.9E-24 203.3 21.9 173 87-259 5-177 (723)
68 1b89_A Protein (clathrin heavy 99.8 3.6E-20 1.2E-24 186.5 17.8 289 101-432 13-308 (449)
69 4i17_A Hypothetical protein; T 99.8 2.2E-18 7.4E-23 165.3 28.2 219 156-417 4-225 (228)
70 4e6h_A MRNA 3'-END-processing 99.8 3.9E-17 1.3E-21 178.2 41.4 458 141-640 48-578 (679)
71 1b89_A Protein (clathrin heavy 99.8 2.6E-20 9E-25 187.5 15.2 385 133-580 11-400 (449)
72 3ulq_A Response regulator aspa 99.8 1.3E-19 4.6E-24 189.0 19.3 306 129-436 16-369 (383)
73 3q15_A PSP28, response regulat 99.8 2.2E-18 7.5E-23 179.3 27.6 312 88-402 9-366 (378)
74 3qky_A Outer membrane assembly 99.8 2.7E-19 9.1E-24 175.6 19.1 172 90-261 14-229 (261)
75 3dra_A Protein farnesyltransfe 99.8 2.4E-18 8.3E-23 168.6 25.5 192 87-280 28-237 (306)
76 3qky_A Outer membrane assembly 99.8 9.9E-19 3.4E-23 171.6 22.3 200 119-319 9-250 (261)
77 1hz4_A MALT regulatory protein 99.8 1.5E-17 5.2E-22 172.8 30.3 273 93-365 16-322 (373)
78 3nf1_A KLC 1, kinesin light ch 99.8 1.8E-19 6.2E-24 182.2 15.1 256 121-404 23-310 (311)
79 3nf1_A KLC 1, kinesin light ch 99.8 9.2E-20 3.2E-24 184.3 12.9 255 85-365 21-307 (311)
80 1hz4_A MALT regulatory protein 99.8 3.7E-17 1.3E-21 169.8 31.9 305 126-437 15-351 (373)
81 3as5_A MAMA; tetratricopeptide 99.8 4.8E-18 1.6E-22 157.0 20.7 171 91-261 8-178 (186)
82 3urz_A Uncharacterized protein 99.8 2.5E-18 8.5E-23 161.7 18.9 169 91-260 4-190 (208)
83 4ga2_A E3 SUMO-protein ligase 99.8 1.7E-19 5.8E-24 159.4 10.1 145 98-242 4-149 (150)
84 3dra_A Protein farnesyltransfe 99.8 1E-16 3.5E-21 157.1 28.6 233 140-380 48-301 (306)
85 4ga2_A E3 SUMO-protein ligase 99.8 3.1E-19 1.1E-23 157.7 9.8 147 130-278 2-149 (150)
86 2pzi_A Probable serine/threoni 99.8 1.3E-18 4.3E-23 194.3 15.9 186 102-290 402-596 (681)
87 3q15_A PSP28, response regulat 99.8 7.6E-17 2.6E-21 167.6 28.3 238 230-480 104-364 (378)
88 1qqe_A Vesicular transport pro 99.8 1.7E-17 5.9E-22 165.2 22.0 249 109-379 3-281 (292)
89 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.6E-17 8.9E-22 157.0 21.8 184 92-292 5-213 (225)
90 1qqe_A Vesicular transport pro 99.8 1.2E-17 4.1E-22 166.3 20.2 224 106-344 32-282 (292)
91 3as5_A MAMA; tetratricopeptide 99.8 4.6E-17 1.6E-21 150.2 22.0 168 125-294 8-175 (186)
92 2pzi_A Probable serine/threoni 99.8 4.9E-17 1.7E-21 181.5 25.7 188 153-351 388-583 (681)
93 3urz_A Uncharacterized protein 99.8 9.1E-18 3.1E-22 157.8 16.3 166 124-292 3-186 (208)
94 2r5s_A Uncharacterized protein 99.7 1.9E-17 6.4E-22 151.2 15.4 162 93-255 8-172 (176)
95 2r5s_A Uncharacterized protein 99.7 2.4E-17 8.1E-22 150.5 15.1 171 121-292 2-173 (176)
96 3dss_A Geranylgeranyl transfer 99.7 1.6E-15 5.6E-20 149.1 28.7 195 96-292 34-267 (331)
97 3edt_B KLC 2, kinesin light ch 99.7 1.7E-17 5.9E-22 164.9 14.0 229 102-365 12-281 (283)
98 4gco_A Protein STI-1; structur 99.7 3.1E-17 1.1E-21 139.6 13.5 117 120-236 8-124 (126)
99 3edt_B KLC 2, kinesin light ch 99.7 4.9E-17 1.7E-21 161.6 15.9 233 136-401 12-281 (283)
100 3q7a_A Farnesyltransferase alp 99.7 1.4E-15 4.8E-20 150.0 25.6 194 84-279 46-258 (349)
101 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.1E-16 7.2E-21 150.7 18.7 191 124-331 3-214 (225)
102 3qou_A Protein YBBN; thioredox 99.7 2.7E-16 9.1E-21 155.9 19.2 171 122-292 114-284 (287)
103 3qou_A Protein YBBN; thioredox 99.7 3.4E-16 1.1E-20 155.2 18.8 167 89-255 115-283 (287)
104 4gco_A Protein STI-1; structur 99.7 1.6E-16 5.4E-21 135.2 13.5 121 150-272 4-124 (126)
105 2vsy_A XCC0866; transferase, g 99.7 7.1E-16 2.4E-20 169.6 20.6 165 104-270 2-169 (568)
106 3dss_A Geranylgeranyl transfer 99.7 3E-14 1E-18 140.1 29.3 247 137-416 41-319 (331)
107 3gyz_A Chaperone protein IPGC; 99.7 7.5E-17 2.6E-21 141.1 9.2 114 113-226 24-137 (151)
108 3gyz_A Chaperone protein IPGC; 99.7 1.4E-16 4.9E-21 139.3 10.1 118 144-261 21-138 (151)
109 3q7a_A Farnesyltransferase alp 99.7 1.5E-14 5.2E-19 142.6 25.0 179 133-317 62-258 (349)
110 4f3v_A ESX-1 secretion system 99.6 5.6E-16 1.9E-20 147.6 11.8 212 88-307 4-247 (282)
111 3rjv_A Putative SEL1 repeat pr 99.6 2.6E-14 8.9E-19 134.4 20.4 175 108-292 3-197 (212)
112 2vgx_A Chaperone SYCD; alterna 99.6 2.8E-15 9.6E-20 131.7 12.9 117 146-262 8-124 (148)
113 2vgx_A Chaperone SYCD; alterna 99.6 7.5E-16 2.6E-20 135.3 9.1 120 111-230 7-126 (148)
114 2ifu_A Gamma-SNAP; membrane fu 99.6 8.6E-15 3E-19 146.8 18.0 227 103-357 3-253 (307)
115 4f3v_A ESX-1 secretion system 99.6 4.7E-15 1.6E-19 141.3 14.9 211 197-414 11-249 (282)
116 2vsy_A XCC0866; transferase, g 99.6 6.7E-15 2.3E-19 161.8 18.3 153 138-292 2-157 (568)
117 2ifu_A Gamma-SNAP; membrane fu 99.6 8.6E-15 3E-19 146.8 17.5 228 138-427 4-253 (307)
118 2fo7_A Synthetic consensus TPR 99.6 3.6E-14 1.2E-18 122.8 18.4 133 127-259 3-135 (136)
119 1p5q_A FKBP52, FK506-binding p 99.6 9.9E-17 3.4E-21 162.7 2.3 186 103-292 77-294 (336)
120 2c2l_A CHIP, carboxy terminus 99.6 3.4E-15 1.2E-19 147.3 12.3 195 91-292 4-199 (281)
121 1p5q_A FKBP52, FK506-binding p 99.6 1.8E-15 6.3E-20 153.3 10.1 153 103-255 125-293 (336)
122 2xcb_A PCRH, regulatory protei 99.6 3.1E-15 1.1E-19 130.8 9.7 114 148-261 7-120 (142)
123 2c2l_A CHIP, carboxy terminus 99.6 1.1E-14 3.9E-19 143.5 14.4 103 158-260 3-105 (281)
124 2fo7_A Synthetic consensus TPR 99.6 9.7E-14 3.3E-18 120.0 18.6 134 93-226 3-136 (136)
125 2xcb_A PCRH, regulatory protei 99.6 1.6E-14 5.3E-19 126.3 13.0 125 112-236 5-129 (142)
126 2e2e_A Formate-dependent nitri 99.6 2.2E-14 7.5E-19 131.0 12.4 130 101-230 20-152 (177)
127 3upv_A Heat shock protein STI1 99.6 7.1E-14 2.4E-18 119.3 14.6 98 126-223 5-102 (126)
128 1hh8_A P67PHOX, NCF-2, neutrop 99.5 2E-13 6.8E-18 129.0 18.8 134 90-226 5-154 (213)
129 3upv_A Heat shock protein STI1 99.5 1.3E-13 4.5E-18 117.6 15.7 117 89-205 2-124 (126)
130 1hh8_A P67PHOX, NCF-2, neutrop 99.5 3.9E-13 1.3E-17 126.9 19.5 132 126-260 7-154 (213)
131 2qfc_A PLCR protein; TPR, HTH, 99.5 5.9E-13 2E-17 132.6 21.5 164 92-255 76-265 (293)
132 3mv2_B Coatomer subunit epsilo 99.5 1.4E-12 4.9E-17 125.9 22.2 246 98-373 20-288 (310)
133 1a17_A Serine/threonine protei 99.5 5E-13 1.7E-17 120.4 18.2 128 92-219 14-143 (166)
134 1a17_A Serine/threonine protei 99.5 4.1E-13 1.4E-17 120.9 17.6 129 126-254 14-144 (166)
135 2e2e_A Formate-dependent nitri 99.5 1.9E-13 6.6E-18 124.7 15.5 128 135-262 20-150 (177)
136 3mv2_B Coatomer subunit epsilo 99.5 9.1E-13 3.1E-17 127.3 20.5 275 124-429 13-306 (310)
137 1dce_A Protein (RAB geranylger 99.5 3.2E-13 1.1E-17 145.8 19.1 185 95-281 32-244 (567)
138 2lni_A Stress-induced-phosphop 99.5 2.8E-13 9.4E-18 116.8 15.0 120 88-207 13-132 (133)
139 3rjv_A Putative SEL1 repeat pr 99.5 7.2E-13 2.5E-17 124.5 19.0 162 91-258 18-199 (212)
140 2vyi_A SGTA protein; chaperone 99.5 2.6E-13 9E-18 116.5 14.8 118 91-208 12-129 (131)
141 2fbn_A 70 kDa peptidylprolyl i 99.5 3.6E-14 1.2E-18 132.2 9.7 146 102-247 15-176 (198)
142 2lni_A Stress-induced-phosphop 99.5 4.5E-13 1.5E-17 115.5 15.1 122 121-242 12-133 (133)
143 2fbn_A 70 kDa peptidylprolyl i 99.5 3.6E-14 1.2E-18 132.2 8.7 164 125-290 4-184 (198)
144 3sz7_A HSC70 cochaperone (SGT) 99.5 4.8E-13 1.7E-17 120.2 15.8 113 88-200 8-120 (164)
145 2vyi_A SGTA protein; chaperone 99.5 6.4E-13 2.2E-17 114.1 15.9 124 120-243 7-130 (131)
146 2qfc_A PLCR protein; TPR, HTH, 99.5 2E-12 6.8E-17 128.7 21.7 172 121-292 71-266 (293)
147 3u3w_A Transcriptional activat 99.5 6.5E-13 2.2E-17 132.3 17.8 163 93-255 77-265 (293)
148 3sz7_A HSC70 cochaperone (SGT) 99.5 8.5E-13 2.9E-17 118.6 16.5 106 157-262 9-114 (164)
149 1na0_A Designed protein CTPR3; 99.5 2.5E-12 8.4E-17 109.3 17.2 116 125-240 9-124 (125)
150 2hr2_A Hypothetical protein; a 99.5 4.5E-13 1.5E-17 114.9 12.0 116 90-227 10-136 (159)
151 4gcn_A Protein STI-1; structur 99.5 5.6E-13 1.9E-17 113.4 12.6 99 126-224 9-114 (127)
152 1hxi_A PEX5, peroxisome target 99.5 4.3E-13 1.5E-17 113.0 11.7 101 93-193 19-119 (121)
153 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 6.6E-14 2.2E-18 148.3 8.1 159 104-283 247-405 (457)
154 2uy1_A Cleavage stimulation fa 99.5 1.7E-10 5.7E-15 122.6 34.0 61 352-415 195-255 (493)
155 1hxi_A PEX5, peroxisome target 99.4 6.3E-13 2.2E-17 111.9 12.1 100 127-226 19-118 (121)
156 3q49_B STIP1 homology and U bo 99.4 1.1E-12 3.8E-17 113.7 14.1 104 122-225 6-109 (137)
157 2uy1_A Cleavage stimulation fa 99.4 4.1E-10 1.4E-14 119.7 36.2 360 90-480 13-412 (493)
158 4gcn_A Protein STI-1; structur 99.4 2.1E-12 7.2E-17 109.8 14.3 110 89-199 6-122 (127)
159 3rkv_A Putative peptidylprolyl 99.4 1.1E-12 3.8E-17 117.5 13.2 117 89-205 9-144 (162)
160 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 2.3E-13 7.9E-18 144.1 10.0 149 174-328 249-413 (457)
161 2hr2_A Hypothetical protein; a 99.4 8.1E-13 2.8E-17 113.3 11.0 115 126-262 12-137 (159)
162 3q49_B STIP1 homology and U bo 99.4 3.8E-12 1.3E-16 110.3 15.5 106 154-259 4-109 (137)
163 3gw4_A Uncharacterized protein 99.4 1.8E-12 6.1E-17 121.3 14.3 158 101-258 2-178 (203)
164 1elw_A TPR1-domain of HOP; HOP 99.4 6.6E-12 2.3E-16 105.3 16.4 111 92-202 5-115 (118)
165 1elw_A TPR1-domain of HOP; HOP 99.4 4.9E-12 1.7E-16 106.1 15.4 113 125-237 4-116 (118)
166 1dce_A Protein (RAB geranylger 99.4 7.5E-12 2.6E-16 135.1 20.1 174 140-319 44-244 (567)
167 3u3w_A Transcriptional activat 99.4 5.7E-12 2E-16 125.4 17.7 166 128-293 78-267 (293)
168 1na0_A Designed protein CTPR3; 99.4 1.2E-11 4E-16 105.0 17.2 117 91-207 9-125 (125)
169 4b4t_Q 26S proteasome regulato 99.4 2.1E-11 7.2E-16 129.2 22.9 202 93-294 6-247 (434)
170 3rkv_A Putative peptidylprolyl 99.4 1.8E-12 6E-17 116.2 12.1 116 125-240 11-145 (162)
171 2dba_A Smooth muscle cell asso 99.4 8E-12 2.7E-16 109.9 15.7 113 90-202 27-142 (148)
172 2xev_A YBGF; tetratricopeptide 99.4 1.2E-11 4.2E-16 105.7 16.2 108 95-202 6-119 (129)
173 3gw4_A Uncharacterized protein 99.4 9.2E-12 3.1E-16 116.3 16.6 159 135-293 2-177 (203)
174 2xev_A YBGF; tetratricopeptide 99.4 9.6E-12 3.3E-16 106.4 15.2 114 126-239 3-122 (129)
175 2kck_A TPR repeat; tetratricop 99.4 5.6E-12 1.9E-16 104.6 12.2 106 155-260 2-110 (112)
176 2kck_A TPR repeat; tetratricop 99.3 3.9E-12 1.3E-16 105.7 10.3 106 121-226 2-110 (112)
177 1zu2_A Mitochondrial import re 99.3 2.2E-12 7.5E-17 110.3 8.4 71 103-173 14-94 (158)
178 1wao_1 Serine/threonine protei 99.3 4.5E-13 1.5E-17 142.4 4.5 138 125-262 6-156 (477)
179 2if4_A ATFKBP42; FKBP-like, al 99.3 1.1E-12 3.8E-17 132.9 7.0 153 92-261 180-333 (338)
180 2dba_A Smooth muscle cell asso 99.3 1.6E-11 5.5E-16 107.9 13.7 120 120-239 23-145 (148)
181 1elr_A TPR2A-domain of HOP; HO 99.3 9.8E-12 3.4E-16 106.6 11.7 98 127-224 6-110 (131)
182 1wao_1 Serine/threonine protei 99.3 1.4E-12 4.9E-17 138.5 7.7 134 93-226 8-154 (477)
183 2if4_A ATFKBP42; FKBP-like, al 99.3 2.2E-12 7.7E-17 130.6 8.7 103 126-228 231-334 (338)
184 3k9i_A BH0479 protein; putativ 99.3 4.8E-12 1.7E-16 106.0 8.4 93 138-230 3-98 (117)
185 1elr_A TPR2A-domain of HOP; HO 99.3 2.9E-11 1E-15 103.5 13.1 117 90-207 3-126 (131)
186 1ihg_A Cyclophilin 40; ppiase 99.3 3.5E-11 1.2E-15 123.0 15.8 139 91-247 223-361 (370)
187 3k9i_A BH0479 protein; putativ 99.3 3.4E-12 1.2E-16 107.0 6.6 101 103-203 2-105 (117)
188 1zu2_A Mitochondrial import re 99.3 1.2E-11 4.3E-16 105.7 9.2 91 137-227 14-125 (158)
189 1ihg_A Cyclophilin 40; ppiase 99.3 3.7E-11 1.3E-15 122.8 14.4 140 126-285 224-363 (370)
190 4b4t_Q 26S proteasome regulato 99.2 5.3E-10 1.8E-14 118.4 21.7 214 229-480 6-244 (434)
191 3ro3_A PINS homolog, G-protein 99.2 1.6E-10 5.3E-15 103.3 12.6 131 92-222 10-158 (164)
192 3ro3_A PINS homolog, G-protein 99.2 1.1E-10 3.9E-15 104.2 11.4 131 126-256 10-158 (164)
193 2kat_A Uncharacterized protein 99.1 5.9E-10 2E-14 92.8 11.2 86 177-262 3-88 (115)
194 2l6j_A TPR repeat-containing p 99.0 6.5E-10 2.2E-14 91.8 9.4 98 335-434 3-106 (111)
195 2kat_A Uncharacterized protein 99.0 1.4E-09 4.8E-14 90.5 11.2 82 143-224 3-84 (115)
196 2l6j_A TPR repeat-containing p 99.0 2.1E-10 7.2E-15 94.9 5.9 91 160-250 5-101 (111)
197 1na3_A Designed protein CTPR2; 99.0 2.4E-09 8.1E-14 84.6 10.7 77 127-203 11-87 (91)
198 1na3_A Designed protein CTPR2; 99.0 4.2E-09 1.4E-13 83.2 11.6 85 157-241 7-91 (91)
199 3ma5_A Tetratricopeptide repea 98.9 3.9E-09 1.3E-13 85.0 9.5 74 189-262 3-76 (100)
200 3ly7_A Transcriptional activat 98.9 3.9E-08 1.4E-12 96.5 16.9 74 187-261 271-344 (372)
201 3ma5_A Tetratricopeptide repea 98.9 6.1E-09 2.1E-13 83.9 9.2 69 121-189 3-71 (100)
202 2kc7_A BFR218_protein; tetratr 98.9 2.6E-09 8.7E-14 86.1 6.8 90 95-192 4-94 (99)
203 1klx_A Cysteine rich protein B 98.9 4.5E-08 1.5E-12 84.0 13.9 119 105-233 9-135 (138)
204 2kc7_A BFR218_protein; tetratr 98.8 7.5E-09 2.6E-13 83.3 7.9 89 164-260 5-94 (99)
205 3n71_A Histone lysine methyltr 98.8 2.2E-08 7.5E-13 105.2 11.3 125 96-220 314-462 (490)
206 3ly7_A Transcriptional activat 98.8 1.9E-07 6.6E-12 91.7 16.4 70 220-292 270-339 (372)
207 1klx_A Cysteine rich protein B 98.7 1.7E-07 5.7E-12 80.4 13.8 111 139-257 9-127 (138)
208 3u64_A Protein TP_0956; tetrat 98.7 2.5E-07 8.4E-12 86.8 15.2 174 108-292 49-269 (301)
209 3u64_A Protein TP_0956; tetrat 98.7 7.4E-07 2.5E-11 83.6 17.8 109 328-438 144-272 (301)
210 3n71_A Histone lysine methyltr 98.6 9.8E-08 3.3E-12 100.3 10.9 124 169-292 319-464 (490)
211 4g26_A Pentatricopeptide repea 98.6 1.5E-06 5.2E-11 92.1 18.3 167 230-401 29-204 (501)
212 4g26_A Pentatricopeptide repea 98.6 2.4E-06 8.2E-11 90.6 19.6 159 309-479 34-202 (501)
213 3bee_A Putative YFRE protein; 98.5 8.4E-07 2.9E-11 69.3 11.5 74 189-262 2-78 (93)
214 3bee_A Putative YFRE protein; 98.5 6.4E-07 2.2E-11 69.9 10.7 70 156-225 3-75 (93)
215 1pc2_A Mitochondria fission pr 98.4 1.3E-06 4.5E-11 73.7 10.6 88 110-197 17-109 (152)
216 1pc2_A Mitochondria fission pr 98.4 2.1E-06 7.1E-11 72.4 11.3 93 141-233 14-111 (152)
217 3qww_A SET and MYND domain-con 98.3 2.4E-06 8.3E-11 88.1 9.8 97 615-765 310-411 (433)
218 2v5f_A Prolyl 4-hydroxylase su 98.2 8.4E-06 2.9E-10 65.6 10.6 67 95-161 9-82 (104)
219 2v5f_A Prolyl 4-hydroxylase su 98.2 1.3E-05 4.5E-10 64.4 11.4 72 162-233 8-86 (104)
220 3qww_A SET and MYND domain-con 98.2 6.2E-06 2.1E-10 85.1 11.2 92 138-229 311-423 (433)
221 3qwp_A SET and MYND domain-con 98.1 5.3E-06 1.8E-10 85.8 9.4 107 133-239 295-425 (429)
222 3qwp_A SET and MYND domain-con 98.0 2.3E-05 7.9E-10 81.0 10.2 108 169-276 297-426 (429)
223 1nzn_A CGI-135 protein, fissio 97.9 0.00013 4.4E-09 59.0 11.2 91 108-198 18-113 (126)
224 1nzn_A CGI-135 protein, fissio 97.9 0.00017 5.7E-09 58.4 11.1 94 141-234 17-115 (126)
225 3ffl_A Anaphase-promoting comp 97.8 0.00022 7.6E-09 60.4 11.3 133 92-237 21-165 (167)
226 4h7y_A Dual specificity protei 97.6 0.0011 3.7E-08 54.8 12.7 109 120-229 8-130 (161)
227 3ffl_A Anaphase-promoting comp 97.6 0.00022 7.4E-09 60.4 8.9 45 405-462 121-165 (167)
228 4h7y_A Dual specificity protei 97.5 0.0013 4.5E-08 54.3 11.5 104 155-259 9-126 (161)
229 1qsa_A Protein (soluble lytic 97.3 0.3 1E-05 52.5 33.3 365 113-518 57-436 (618)
230 4ady_A RPN2, 26S proteasome re 97.1 0.52 1.8E-05 52.6 36.0 189 311-523 384-588 (963)
231 3txn_A 26S proteasome regulato 97.0 0.012 4E-07 59.1 14.6 116 447-565 94-212 (394)
232 1y8m_A FIS1; mitochondria, unk 96.9 0.021 7.3E-07 46.9 12.9 76 123-198 37-116 (144)
233 3o48_A Mitochondria fission 1 96.9 0.0061 2.1E-07 49.4 9.5 69 94-162 43-115 (134)
234 1qsa_A Protein (soluble lytic 96.8 0.74 2.5E-05 49.4 37.8 409 91-558 6-437 (618)
235 1y8m_A FIS1; mitochondria, unk 96.8 0.029 9.9E-07 46.1 12.8 77 156-232 36-116 (144)
236 3o48_A Mitochondria fission 1 96.8 0.02 6.8E-07 46.4 11.5 73 158-230 39-115 (134)
237 4b4t_P 26S proteasome regulato 96.8 0.24 8.2E-06 51.2 22.8 204 88-292 14-247 (445)
238 3mkq_A Coatomer beta'-subunit; 96.5 0.27 9.1E-06 55.9 23.9 122 99-249 607-729 (814)
239 3txn_A 26S proteasome regulato 96.4 0.26 9.1E-06 49.3 19.3 98 305-402 103-211 (394)
240 3mkq_A Coatomer beta'-subunit; 96.3 0.12 4.2E-06 58.8 19.0 76 347-429 663-746 (814)
241 4b4t_P 26S proteasome regulato 96.2 0.44 1.5E-05 49.2 20.4 110 451-563 136-247 (445)
242 3spa_A Mtrpol, DNA-directed RN 96.1 0.023 7.9E-07 63.2 10.9 111 227-340 127-240 (1134)
243 4ady_A RPN2, 26S proteasome re 96.0 0.55 1.9E-05 52.4 21.1 254 101-364 384-657 (963)
244 3kae_A CDC27, possible protein 95.9 0.63 2.1E-05 39.1 16.8 161 95-260 37-241 (242)
245 3mkq_B Coatomer subunit alpha; 95.8 0.46 1.6E-05 41.1 15.2 45 102-151 16-60 (177)
246 3mkq_B Coatomer subunit alpha; 95.7 0.45 1.5E-05 41.1 15.0 109 124-253 7-115 (177)
247 3kae_A CDC27, possible protein 95.5 0.92 3.1E-05 38.1 20.2 187 97-292 8-237 (242)
248 4gns_B Protein CSD3, chitin bi 95.5 0.068 2.3E-06 58.4 11.3 111 107-218 265-396 (754)
249 4gns_B Protein CSD3, chitin bi 95.4 0.055 1.9E-06 59.1 10.3 115 138-253 261-397 (754)
250 1zbp_A Hypothetical protein VP 95.2 0.28 9.5E-06 45.5 12.5 121 99-226 5-133 (273)
251 2ff4_A Probable regulatory pro 95.0 0.27 9.3E-06 49.8 13.6 118 91-221 115-233 (388)
252 3spa_A Mtrpol, DNA-directed RN 94.9 0.18 6.1E-06 56.4 12.3 105 265-369 129-234 (1134)
253 1zbp_A Hypothetical protein VP 94.7 0.27 9.1E-06 45.6 11.1 127 381-527 6-132 (273)
254 2ff4_A Probable regulatory pro 93.7 0.9 3.1E-05 45.9 13.9 111 167-292 123-234 (388)
255 4fhn_B Nucleoporin NUP120; pro 93.3 2.8 9.7E-05 49.3 19.2 59 194-252 900-963 (1139)
256 4b4t_S RPN3, 26S proteasome re 93.0 1 3.5E-05 46.4 12.8 138 87-226 130-303 (523)
257 4b4t_R RPN7, 26S proteasome re 92.4 0.79 2.7E-05 47.1 11.5 64 229-292 133-197 (429)
258 4b4t_R RPN7, 26S proteasome re 92.0 0.83 2.9E-05 46.9 11.0 101 192-292 130-237 (429)
259 4fhn_B Nucleoporin NUP120; pro 91.9 15 0.00051 43.2 22.8 199 197-401 816-1050(1139)
260 1ya0_A SMG-7 transcript varian 91.6 0.87 3E-05 47.3 10.5 80 161-240 154-233 (497)
261 4b4t_S RPN3, 26S proteasome re 90.8 1.2 4.2E-05 45.8 10.4 148 169-318 146-328 (523)
262 1ya0_A SMG-7 transcript varian 90.7 1.3 4.4E-05 46.0 10.8 81 194-276 153-233 (497)
263 3lvg_A Clathrin heavy chain 1; 90.1 1.2E-05 4E-10 80.2 -25.7 234 157-429 52-285 (624)
264 3lvg_A Clathrin heavy chain 1; 89.0 8.3E-05 2.8E-09 74.2 -20.7 225 123-385 52-276 (624)
265 3lpz_A GET4 (YOR164C homolog); 86.9 23 0.00079 34.2 24.4 42 389-430 119-160 (336)
266 3lpz_A GET4 (YOR164C homolog); 81.8 39 0.0013 32.7 29.5 138 89-250 10-159 (336)
267 2wpv_A GET4, UPF0363 protein Y 79.7 44 0.0015 32.0 20.6 27 404-430 132-158 (312)
268 2wpv_A GET4, UPF0363 protein Y 74.0 64 0.0022 30.9 26.0 47 90-150 12-58 (312)
269 1wy6_A Hypothetical protein ST 71.5 40 0.0014 27.5 14.7 35 89-123 5-39 (172)
270 4gq2_M Nucleoporin NUP120; bet 67.9 75 0.0026 36.3 15.1 110 130-257 815-927 (950)
271 4gq2_M Nucleoporin NUP120; bet 63.6 58 0.002 37.2 13.1 53 198-254 815-867 (950)
272 2rpa_A Katanin P60 ATPase-cont 60.6 6.7 0.00023 28.3 3.0 29 684-712 15-43 (78)
273 2vkj_A TM1634; membrane protei 59.5 31 0.0011 25.2 6.1 32 89-120 51-82 (106)
274 3ax2_A Mitochondrial import re 59.0 16 0.00056 25.9 4.7 31 608-638 22-52 (73)
275 3ax2_A Mitochondrial import re 52.6 41 0.0014 23.9 5.8 30 198-227 22-51 (73)
276 2ijq_A Hypothetical protein; s 50.4 77 0.0026 26.7 8.3 65 89-153 30-103 (161)
277 2wvi_A Mitotic checkpoint seri 49.4 98 0.0034 26.2 8.8 48 355-402 79-126 (164)
278 4a5x_A MITD1, MIT domain-conta 47.6 27 0.00092 25.8 4.6 32 88-119 13-44 (86)
279 1wy6_A Hypothetical protein ST 47.4 1.2E+02 0.0039 24.9 14.6 56 344-401 99-154 (172)
280 2rpa_A Katanin P60 ATPase-cont 43.3 37 0.0013 24.5 4.5 32 89-120 10-41 (78)
281 2w2u_A Hypothetical P60 katani 41.2 52 0.0018 24.1 5.2 30 90-119 18-47 (83)
282 2wvi_A Mitotic checkpoint seri 40.5 1.7E+02 0.0057 24.8 10.9 81 283-369 43-129 (164)
283 1om2_A Protein (mitochondrial 40.3 25 0.00086 26.4 3.4 29 608-636 25-53 (95)
284 4aez_C MAD3, mitotic spindle c 40.2 1.4E+02 0.0049 26.7 8.8 51 354-404 132-182 (223)
285 1wfd_A Hypothetical protein 15 37.1 72 0.0025 23.9 5.6 33 87-119 11-43 (93)
286 2v6y_A AAA family ATPase, P60 36.9 65 0.0022 23.5 5.2 29 91-119 11-39 (83)
287 2ijq_A Hypothetical protein; s 36.0 2E+02 0.0067 24.3 8.9 59 163-221 36-103 (161)
288 3t5v_B Nuclear mRNA export pro 34.7 68 0.0023 32.7 6.7 88 208-295 141-253 (455)
289 4a1g_A Mitotic checkpoint seri 34.1 2E+02 0.007 23.9 13.0 50 355-404 84-133 (152)
290 3t5x_A PCI domain-containing p 33.9 93 0.0032 27.5 6.8 32 195-226 16-47 (203)
291 3mv2_A Coatomer subunit alpha; 33.2 3.3E+02 0.011 26.0 16.2 113 455-568 117-241 (325)
292 2cfu_A SDSA1; SDS-hydrolase, l 32.9 60 0.002 35.2 6.4 45 95-139 453-497 (658)
293 3uzd_A 14-3-3 protein gamma; s 32.7 2.9E+02 0.0099 25.2 16.1 30 497-526 6-35 (248)
294 2cpt_A SKD1 protein, vacuolar 32.5 71 0.0024 25.2 5.1 31 89-119 16-46 (117)
295 2v6x_A Vacuolar protein sortin 32.0 79 0.0027 23.2 5.1 31 89-119 11-41 (85)
296 3t5x_A PCI domain-containing p 31.8 1E+02 0.0036 27.2 6.8 34 91-124 14-47 (203)
297 1om2_A Protein (mitochondrial 31.7 99 0.0034 23.3 5.4 29 95-123 24-52 (95)
298 3esl_A Checkpoint serine/threo 30.8 2.8E+02 0.0094 24.4 16.6 69 335-404 79-147 (202)
299 3t5v_B Nuclear mRNA export pro 30.1 1.1E+02 0.0039 31.0 7.5 62 165-226 182-254 (455)
300 2crb_A Nuclear receptor bindin 29.8 88 0.003 23.2 4.6 25 162-186 18-42 (97)
301 2qx5_A Nucleoporin NIC96; mRNA 28.8 5.5E+02 0.019 27.6 12.7 30 375-405 539-570 (661)
302 2cwy_A Hypothetical protein TT 27.8 1.3E+02 0.0045 22.6 5.6 56 96-153 6-67 (94)
303 2qx5_A Nucleoporin NIC96; mRNA 27.6 6E+02 0.02 27.3 15.4 23 410-432 540-564 (661)
304 2crb_A Nuclear receptor bindin 27.4 1.1E+02 0.0037 22.8 4.7 27 374-400 17-43 (97)
305 3mkr_B Coatomer subunit alpha; 26.5 4.3E+02 0.015 25.2 13.4 112 455-567 105-231 (320)
306 2vkj_A TM1634; membrane protei 25.9 1.5E+02 0.005 21.8 5.1 30 336-365 53-82 (106)
307 3mv2_A Coatomer subunit alpha; 25.8 4.4E+02 0.015 25.1 14.0 34 89-122 112-145 (325)
308 2w2u_A Hypothetical P60 katani 24.9 72 0.0025 23.3 3.6 22 689-710 27-48 (83)
309 2v6y_A AAA family ATPase, P60 23.7 78 0.0027 23.1 3.6 22 689-710 19-40 (83)
310 2ynq_A ESSB; membrane protein, 23.0 1.8E+02 0.006 24.4 5.9 18 300-317 40-57 (161)
311 3bu8_A Telomeric repeat-bindin 21.2 4.3E+02 0.015 23.4 8.6 51 379-429 121-171 (235)
312 3lxu_X Tripeptidyl-peptidase 2 20.5 3.3E+02 0.011 32.0 9.5 206 372-606 1107-1354(1354)
313 4a1g_A Mitotic checkpoint seri 20.2 3.8E+02 0.013 22.3 12.6 86 282-369 47-134 (152)
314 3bu8_A Telomeric repeat-bindin 20.0 4.6E+02 0.016 23.2 8.4 38 133-170 122-159 (235)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.6e-42 Score=358.42 Aligned_cols=385 Identities=15% Similarity=0.108 Sum_probs=370.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249 96 GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT 175 (765)
Q Consensus 96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 175 (765)
..|..+++.|++++|+..+.++++.+|+++.++..+|.++...|++++|...+++++..+|.++.++..+|.++...|++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004249 176 TWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255 (765)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 255 (765)
++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCCh
Q 004249 256 GHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDH 335 (765)
Q Consensus 256 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 335 (765)
.+|++.. ++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++... |.+
T Consensus 164 ~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 164 TQPNFAV--AWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HCTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred hCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 9998766 7889999999999999999999999999 78889999999999999999999999999998877 788
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249 336 AESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL 415 (765)
Q Consensus 336 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 415 (765)
+.++..+|.++...|++++|+..|++++.. .|+++.++..+|.++...|++++|+..|+++++..|.+..++..++.+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHH
Q 004249 416 LLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHR 495 (765)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~ 495 (765)
+...|++++|+..++++++..|.. ..++..++.++...|++++|+..+.+++. .+|+.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---------~~p~~~ 373 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEF------------AAAHSNLASVLQQQGKLQEALMHYKEAIR---------ISPTFA 373 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTC------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHT---------TCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------hCCCCH
Confidence 999999999999999999988876 67889999999999999999999999986 778999
Q ss_pred HHHHHHHHHHHhhhc
Q 004249 496 LLIIDLCKTLASLHR 510 (765)
Q Consensus 496 ~~~~~l~~~~~~~~~ 510 (765)
.++..+|.++...|+
T Consensus 374 ~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 374 DAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHhHHHHHHHccC
Confidence 999999999887764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-40 Score=372.29 Aligned_cols=459 Identities=14% Similarity=0.071 Sum_probs=409.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW 168 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 168 (765)
+.+..+...+..+...|++++|+..|++++...|+. ..++.+|.++...|++++|+..|++++.. |.++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 356667788889999999999999999999999954 77889999999999999999999998765 6789999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004249 169 LIEQGDTTWAMSCLSEAVKAD----------------PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM 232 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 232 (765)
|...|++++|+..|++..... |.+..++..+|.+|...|++++|+..|+++++.+|.+..++..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 999999999999998643222 2248899999999999999999999999999999999888776
Q ss_pred HHH--------------------------------------HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 004249 233 GAK--------------------------------------LYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLV 274 (765)
Q Consensus 233 la~--------------------------------------~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 274 (765)
++. .|...|++++|+..|+++++. |.+ ..++..++.++.
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~l~~~~~ 316 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKS--SDLLLCKADTLF 316 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC--HHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cch--HHHHHHHHHHHH
Confidence 643 344678999999999999887 444 347889999999
Q ss_pred HhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHH
Q 004249 275 QMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYST 354 (765)
Q Consensus 275 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 354 (765)
..|++++|+..|++++.. .+....++..++.++...|++++|...+++++... |.++.++..+|.++...|++++
T Consensus 317 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEI----DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HTTCHHHHHHHHHHHHHH----CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCHHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 999999999999999998 56677788999999999999999999999998666 7889999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249 355 ALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMS 434 (765)
Q Consensus 355 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (765)
|+.+|++++.. .|.+..+|..++.++...|++++|+..|+++++..|.+..++..++.++...|++++|+.+|+++++
T Consensus 392 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999998 8999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhH-HHHHHHHHHHHHhhhcHHH
Q 004249 435 LENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEH-RLLIIDLCKTLASLHRYED 513 (765)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 513 (765)
..|.. ..++..++.++...|++++|++.+.+++..... .-.+|++ ..++..+|.++...|++++
T Consensus 470 ~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 470 LFQYD------------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKK---TQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp HCCCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---SCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred hCCCC------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc---cccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 87776 578899999999999999999999999863100 0024554 7899999999999999999
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHh
Q 004249 514 AIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVS 579 (765)
Q Consensus 514 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 579 (765)
|+..|+++++.. |.++..+..++. ++...|++++|...|+++++.+|+++.++..++.++.
T Consensus 535 A~~~~~~~~~~~----p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 535 AIDALNQGLLLS----TNDANVHTAIAL-VYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHS----SCCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC----CCChHHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999998 677777777777 9999999999999999999999999999888876653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.6e-40 Score=346.37 Aligned_cols=378 Identities=16% Similarity=0.115 Sum_probs=313.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q 004249 130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNF 209 (765)
Q Consensus 130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 209 (765)
.+|..++..|++++|+..+.+++..+|++..++..+|.++...|++++|...+++++..+|.++.++..+|.++...|++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289 (765)
Q Consensus 210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 289 (765)
++|+..|++++...|+++.++..+|.++...|++++|+..|+++++.+|+... ++..+|.++...|++++|+..|+++
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC--VRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876 6779999999999999999999999
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC
Q 004249 290 DLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVH 369 (765)
Q Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 369 (765)
+.. .|....++..+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++.. .|
T Consensus 162 l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p 234 (388)
T 1w3b_A 162 IET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SP 234 (388)
T ss_dssp HHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CT
T ss_pred HHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cc
Confidence 988 67777888888888888888888888888887766 677888888888888888888888888888887 78
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhh
Q 004249 370 NDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWW 449 (765)
Q Consensus 370 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 449 (765)
+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|..
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------- 304 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH---------- 304 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC----------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----------
Confidence 8888888888888888888888888888888888888888888888888888888888777777666554
Q ss_pred hhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCC
Q 004249 450 LNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKF 529 (765)
Q Consensus 450 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 529 (765)
..++..++.++...|++++|+..+.+++. ..|++..++..+|.++...|++++|+..|++++++.
T Consensus 305 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---- 369 (388)
T 1w3b_A 305 --ADSLNNLANIKREQGNIEEAVRLYRKALE---------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---- 369 (388)
T ss_dssp --HHHHHHHHHHHHTTTCHHHHHHHHHHHTT---------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC----
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence 45556666666666666666666666654 445566666666666666666666666666666655
Q ss_pred CchHHHHHHHHh
Q 004249 530 PVEKEELYFLGA 541 (765)
Q Consensus 530 ~~~~~~~~~~~~ 541 (765)
|..+..++.++.
T Consensus 370 p~~~~a~~~lg~ 381 (388)
T 1w3b_A 370 PTFADAYSNMGN 381 (388)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHhHHH
Confidence 444444444444
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-41 Score=372.96 Aligned_cols=487 Identities=11% Similarity=-0.014 Sum_probs=404.1
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249 123 ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL 202 (765)
Q Consensus 123 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (765)
.+...|..++..+...|++++|+..|++++...|+ ...+..+|.++...|++++|+..|++++.. |.++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 34678899999999999999999999999998884 477888999999999999999999998765 6789999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 004249 203 YVELGNFQRAADVYRQMVQLC----------------PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVI 266 (765)
Q Consensus 203 ~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 266 (765)
|...|++++|+..|++..... |.+..++..+|.+|...|++++|+..|+++++.+|++.. ++
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE--AF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH--HH
Confidence 999999999999999632222 223789999999999999999999999999999998765 66
Q ss_pred HHHHHHHHHhccHHHHHHH---HHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHH
Q 004249 267 DLLASMLVQMNAYDRVLKH---IELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIA 343 (765)
Q Consensus 267 ~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la 343 (765)
..++.++...+....+... +.+.... +.......+..++..+...|++++|+..|++++.. +.+..++..++
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKE---DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGG---GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccc---hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 6777766655444333221 2222111 11112223344466777888899999999888654 56788888999
Q ss_pred HHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHH
Q 004249 344 DLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDE 423 (765)
Q Consensus 344 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 423 (765)
.++...|++++|+.+|++++.. .|.+..++..++.++...|++++|+..+++++...|.+..++..++.+|...|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999888 78888888899999999999999999999999888999999999999999999999
Q ss_pred HHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHH
Q 004249 424 EAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCK 503 (765)
Q Consensus 424 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 503 (765)
+|+.+|+++++.+|.. ..++..++.++...|++++|++.+.+++. ..|++..++..+|.
T Consensus 391 ~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQF------------GPAWIGFAHSFAIEGEHDQAISAYTTAAR---------LFQGTHLPYLFLGM 449 (597)
T ss_dssp HHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------TTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCccchHHHHHHHH
Confidence 9999998888877765 56788889999999999999999888876 56777888888999
Q ss_pred HHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHh------CCCc-hhhhHHHHH
Q 004249 504 TLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKL------HPHR-LTTWNRYYK 576 (765)
Q Consensus 504 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p~~-~~~~~~~~~ 576 (765)
++...|++++|+++|+++++.. |.++..+..++. ++...|++++|+..|+++++. +|++ ..+|..++.
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF----QYDPLLLNELGV-VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC----CCCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 9999999999999999998887 666666666666 888899999999999999887 5654 677888888
Q ss_pred HHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 004249 577 LVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTAL 647 (765)
Q Consensus 577 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 647 (765)
++...|+. +.+...+.+.++..|++...+..+|.++...|++++|+..|.++++++|+++.+...++.+|
T Consensus 525 ~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 525 AYRKLKMY-DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHhcCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 88777765 67888888888888888888999999999999999999999999999999999988888765
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.7e-36 Score=332.03 Aligned_cols=445 Identities=12% Similarity=0.078 Sum_probs=331.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004249 159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQ 238 (765)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 238 (765)
...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChh
Q 004249 239 KSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTD 318 (765)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (765)
..|++++|+..|+ ++...|+... .....+...+...+|+..+++++...+...+.... .......+....+..
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDG-----ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP-SNTSLASFFGIFDSH 177 (537)
T ss_dssp HHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCC-CHHHHHHHHHTSCHH
T ss_pred HcCCHHHHHHHHH-HHhcCCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccc-hHhHHHHHHHhcChH
Confidence 7777777777774 6666666544 12334455556677777777776552211111100 111222344556666
Q ss_pred HHHHHHHhhcccCCCChHHHHHHHHHHHHc--------cccHHHHHHHHHHHHhccCCCCCHH-------HHHHHHHHHH
Q 004249 319 KAEILLTAIHWENVSDHAESINEIADLFKN--------RELYSTALKYYHMLEANAGVHNDGC-------LHLKIAECSL 383 (765)
Q Consensus 319 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~la~~~~ 383 (765)
.+...+....... +........++.++.. .|++++|+..|++++.. .|+++. ++..+|.++.
T Consensus 178 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 178 LEVSSVNTSSNYD-TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHTSCCCCSSC-SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccc-cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHH
Confidence 6666665554333 4444455555544433 35899999999999998 888755 5777888999
Q ss_pred HhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHH
Q 004249 384 ALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYK 463 (765)
Q Consensus 384 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (765)
..|++++|+..|++++..+|. ..++..+|.++...|++++|+..+++++..+|.. ..++..+|.++.
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~ 321 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY------------PPTYYHRGQMYF 321 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC------------HHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999888876 678899999999
Q ss_pred hcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhc
Q 004249 464 AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQI 543 (765)
Q Consensus 464 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 543 (765)
..|++++|+..+.+++. ..|.+..++..+|.++...|++++|+..+++++... |.++..+..++. +
T Consensus 322 ~~~~~~~A~~~~~~a~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~-~ 387 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQS---------LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF----PTLPEVPTFFAE-I 387 (537)
T ss_dssp HTTCHHHHHHHHHHHHH---------HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTHHHHHHHH-H
T ss_pred hcCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHH-H
Confidence 99999999999999986 567788899999999999999999999999999988 666666666666 9
Q ss_pred ccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhh-------
Q 004249 544 PCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMI------- 616 (765)
Q Consensus 544 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~------- 616 (765)
+...|++++|+..|++++...|++...+..++.. ...|.++...
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------~~~a~~~~~~~~~~~~~ 438 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL-----------------------------IGKATILARQSSQDPTQ 438 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH-----------------------------HHHHHHHHHHHTC----
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH-----------------------------HHHHHHHHHHhhccchh
Confidence 9999999999999999999988776554433221 2234555555
Q ss_pred ---hhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHH
Q 004249 617 ---SHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHH 693 (765)
Q Consensus 617 ---~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~ 693 (765)
|++++|+..|.++++.+|+++ .+++++|.+|..
T Consensus 439 ~~~~~~~~A~~~~~~a~~~~p~~~--------------------------------------------~~~~~l~~~~~~ 474 (537)
T 3fp2_A 439 LDEEKFNAAIKLLTKACELDPRSE--------------------------------------------QAKIGLAQLKLQ 474 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCH--------------------------------------------HHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHhCCCCH--------------------------------------------HHHHHHHHHHHH
Confidence 999999999999999999853 456888899999
Q ss_pred hchHHHHHHHHHHHHhhhhc
Q 004249 694 VGLVSLAASYYEKVLAMYQK 713 (765)
Q Consensus 694 ~g~~~~A~~~y~k~l~~~~~ 713 (765)
.|++++|+.+|++++++.|+
T Consensus 475 ~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 475 MEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--
T ss_pred hccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999885
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.3e-35 Score=324.55 Aligned_cols=409 Identities=12% Similarity=0.021 Sum_probs=342.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
....++..|..++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|++++..+|+++.++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----------------------
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI---------------------- 227 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------------------- 227 (765)
...|++++|+..|+ ++...|+....+. ..+...+...+|+..+++++...|...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999996 8888887665542 244555666788888888876543221
Q ss_pred ---------------HHHHHHHHH--------HHHcCCHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHHhccH
Q 004249 228 ---------------EALKMGAKL--------YQKSGQIESSVDILEDYLKGHPTEAD-----FGVIDLLASMLVQMNAY 279 (765)
Q Consensus 228 ---------------~~~~~la~~--------~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~~l~~~~~~~~~~ 279 (765)
.....++.+ ....|++++|+..++++++.+|++.. ..++..+|.++...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 122222222 23346899999999999999999865 22577889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249 280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYY 359 (765)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 359 (765)
++|+..+++++.. .|. ..++..+|.++...|++++|+..+++++... |.++.++..+|.++...|++++|+..|
T Consensus 260 ~~A~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 260 LDAQVLLQESINL----HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHHHHH----CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc----CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999 555 7889999999999999999999999998877 788999999999999999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249 360 HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY 439 (765)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (765)
++++.. .|.++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|..
T Consensus 334 ~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 999999 899999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred cCcccchhhhhhhHHHHHHHHHHHhc----------chhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhh
Q 004249 440 VNSDKTHAWWLNIRIKIKLCRIYKAK----------GMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLH 509 (765)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 509 (765)
. ..+.....+..++.++... |++++|+..+.+++. .+|++..++..+|.++...|
T Consensus 412 ~------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---------~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 412 E------KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE---------LDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp S------SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTT
T ss_pred h------hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHhc
Confidence 1 1122234466778888888 889999988888886 56778888888888888888
Q ss_pred cHHHHHHHHHHHHHhc
Q 004249 510 RYEDAIKIINLILKLG 525 (765)
Q Consensus 510 ~~~~A~~~~~~al~~~ 525 (765)
++++|+..|++++++.
T Consensus 477 ~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 477 KIDEAIELFEDSAILA 492 (537)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhC
Confidence 8888888888888887
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=323.87 Aligned_cols=420 Identities=11% Similarity=0.003 Sum_probs=348.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
.+..++..|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999 6899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH---HHH---------------------------
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY---RQM--------------------------- 219 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---~~a--------------------------- 219 (765)
...|++++|+..|++++...|.+...................+...+ +.+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999999999866544333333322222122211111 100
Q ss_pred -------HHh--------CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----c--CCCCC-----CHHHHHHH
Q 004249 220 -------VQL--------CPENIEALKMGAKLYQK---SGQIESSVDILEDYLK-----G--HPTEA-----DFGVIDLL 269 (765)
Q Consensus 220 -------l~~--------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~-----~--~p~~~-----~~~~~~~l 269 (765)
... .|.+..++..+|.++.. .|++++|+..|++++. . .|++. ...++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 000 14457888899998887 8999999999999998 5 55542 13478899
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc
Q 004249 270 ASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNR 349 (765)
Q Consensus 270 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 349 (765)
|.++...|++++|+..+++++.. .+. ..++..+|.++...|++++|+..+++++... |.++.++..+|.++...
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL----FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH----CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh----Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999 555 8899999999999999999999999998876 77789999999999999
Q ss_pred ccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 004249 350 ELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLL 429 (765)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (765)
|++++|+..|++++.. .|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+
T Consensus 318 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCcccchhhhhhhHHHHHHHHHHHh---cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHH
Q 004249 430 TPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA---KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLA 506 (765)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 506 (765)
++++...|.... ......++..+|.++.. .|++++|+..+.+++. ..|++..++..+|.++.
T Consensus 396 ~~a~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 396 DLAIELENKLDG------IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK---------LDPRSEQAKIGLAQMKL 460 (514)
T ss_dssp HHHHHHHHTSSS------CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhccch------HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH---------hCcccHHHHHHHHHHHH
Confidence 999887666510 00012367778888888 7888888888877775 45667777777777777
Q ss_pred hhhcHHHHHHHHHHHHHhccCCCCchHHHHH
Q 004249 507 SLHRYEDAIKIINLILKLGYGKFPVEKEELY 537 (765)
Q Consensus 507 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 537 (765)
..|++++|...|++++.+. |.++..+.
T Consensus 461 ~~g~~~~A~~~~~~a~~~~----~~~~~~~~ 487 (514)
T 2gw1_A 461 QQEDIDEAITLFEESADLA----RTMEEKLQ 487 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHC----SSHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhc----cccHHHHH
Confidence 7788888888877777777 45444433
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-35 Score=318.70 Aligned_cols=422 Identities=13% Similarity=0.047 Sum_probs=358.9
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY 203 (765)
Q Consensus 124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 203 (765)
.+.++..+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH---HHH---------------------------
Q 004249 204 VELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDIL---EDY--------------------------- 253 (765)
Q Consensus 204 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---~~~--------------------------- 253 (765)
...|++++|+..|++++...|.+......+...+........+...+ +.+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999999999876443332222222211111111111 100
Q ss_pred -------HhcCCC------CCCHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHh-------cCC---CCccHHHHHHH
Q 004249 254 -------LKGHPT------EADFGVIDLLASMLVQ---MNAYDRVLKHIELVDLVY-------YSG---KELLLALKIKA 307 (765)
Q Consensus 254 -------~~~~p~------~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~~~~~l 307 (765)
....+. ......+..+|.++.. .|++++|+..+++++..+ +.. .+....++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 000000 0113466788888876 899999999999999831 111 14567788999
Q ss_pred HHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcc
Q 004249 308 GICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKE 387 (765)
Q Consensus 308 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 387 (765)
|.++...|++++|+..+++++... |. ..++..+|.++...|++++|+..+++++.. .|.++.++..+|.++...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF-PR-VNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999998877 55 999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcch
Q 004249 388 REKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM 467 (765)
Q Consensus 388 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 467 (765)
+++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA------------PEVPNFFAEILTDKND 387 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC------------SHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC------------HHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999887776 5788899999999999
Q ss_pred hHHHHHhhHHHHhhhcccccccChhhHHH------HHHHHHHHHHh---hhcHHHHHHHHHHHHHhccCCCCchHHHHHH
Q 004249 468 IEGFVDMLLPLVCESSHQEETFNHEEHRL------LIIDLCKTLAS---LHRYEDAIKIINLILKLGYGKFPVEKEELYF 538 (765)
Q Consensus 468 ~~~A~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~l~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 538 (765)
+++|+..+.+++. ..|.+.. ++..+|.++.. .|++++|+..|++++... |.++..+..
T Consensus 388 ~~~A~~~~~~a~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~ 454 (514)
T 2gw1_A 388 FDKALKQYDLAIE---------LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD----PRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHHHH---------HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHH---------hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC----cccHHHHHH
Confidence 9999999999986 4455533 89999999999 999999999999999988 667777777
Q ss_pred HHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHH
Q 004249 539 LGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYK 576 (765)
Q Consensus 539 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 576 (765)
++. ++...|++++|...|+++++.+|+++..+..+..
T Consensus 455 la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 455 LAQ-MKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHH-HHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 777 9999999999999999999999999988876643
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.5e-33 Score=299.66 Aligned_cols=323 Identities=15% Similarity=0.099 Sum_probs=299.2
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 87 VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
.|.++..++..|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 35667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249 167 PWLIEQGDTTWAMSCLSEAVKADPNDF---KLKFHL------------ASLYVELGNFQRAADVYRQMVQLCPENIEALK 231 (765)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 231 (765)
.++...|++++|+..|++++..+|.+. .++..+ |.++...|++++|+..|++++...|.++.++.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999988 776655 66699999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHH----
Q 004249 232 MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA---- 307 (765)
Q Consensus 232 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l---- 307 (765)
.+|.+|...|++++|+..|+++++.+|.+.. ++..+|.++...|++++|+..|++++.. .|.....+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTE--AFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCChHHHHHHHHHHH
Confidence 9999999999999999999999999998865 7889999999999999999999999998 55555555444
Q ss_pred --------HHHHHhcCChhHHHHHHHhhcccCCCChH----HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHH
Q 004249 308 --------GICHIQLGNTDKAEILLTAIHWENVSDHA----ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLH 375 (765)
Q Consensus 308 --------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 375 (765)
|.++...|++++|+..|++++... |.++ ..+..+|.++...|++++|+..+++++.. .|+++.+|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHH
Confidence 899999999999999999998776 5553 47889999999999999999999999999 89999999
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004249 376 LKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE 418 (765)
Q Consensus 376 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 418 (765)
..+|.++...|++++|+..|+++++++|++..++..++.+...
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999966544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.9e-33 Score=301.84 Aligned_cols=334 Identities=15% Similarity=0.107 Sum_probs=297.3
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 107 YEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAV 186 (765)
Q Consensus 107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 186 (765)
...+...+.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44566777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHH
Q 004249 187 KADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI---EALKMG------------AKLYQKSGQIESSVDILE 251 (765)
Q Consensus 187 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~ 251 (765)
+.+|+++.++..+|.++...|++++|+..|++++...|.+. .++..+ |.++...|++++|+..|+
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 776555 666999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249 252 DYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN 331 (765)
Q Consensus 252 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 331 (765)
+++...|.+.. ++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++...
T Consensus 168 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 168 KILEVCVWDAE--LRELRAECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHCTTCHH--HHHHHHHHHHHTTCGGGGHHHHHHHHHH----HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCChH--HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999998766 7889999999999999999999999999 66778999999999999999999999999998776
Q ss_pred CCChHHHHHHH------------HHHHHccccHHHHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHhccHHHHHHHH
Q 004249 332 VSDHAESINEI------------ADLFKNRELYSTALKYYHMLEANAGVHNDG----CLHLKIAECSLALKEREKSIIYF 395 (765)
Q Consensus 332 ~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~ 395 (765)
|.+...+..+ |.++...|++++|+.+|++++.. .|.++ .++..+|.++...|++++|+..+
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6667766555 99999999999999999999998 88875 47889999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHH
Q 004249 396 YKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRI 461 (765)
Q Consensus 396 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (765)
+++++.+|++..++..+|.++...|++++|+..++++++.+|.. ..++..++.+
T Consensus 319 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~ 372 (450)
T 2y4t_A 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND------------QQIREGLEKA 372 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC------------HHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch------------HHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887 4566666644
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.6e-32 Score=284.83 Aligned_cols=322 Identities=15% Similarity=0.104 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
++..++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249 170 IEQGDTTWAMSCLSEAVKADP---NDFKLKFHL------------ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA 234 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 234 (765)
...|++++|+..|++++..+| .++.++..+ |.++...|++++|+..++++++..|.++.++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 888888777 79999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHH----------
Q 004249 235 KLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK---------- 304 (765)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---------- 304 (765)
.++...|++++|+..+++++...|.++. ++..+|.++...|++++|+..+++++.. .|.....+
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTE--AFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 7889999999999999999999999998 44444433
Q ss_pred --HHHHHHHHhcCChhHHHHHHHhhcccCCCChH----HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHH
Q 004249 305 --IKAGICHIQLGNTDKAEILLTAIHWENVSDHA----ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKI 378 (765)
Q Consensus 305 --~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 378 (765)
..+|.++...|++++|+..+++++... |.++ .++..+|.++...|++++|+..|++++.. .|+++.++..+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 312 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 244888999999999999999998776 5554 34667999999999999999999999999 89999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 004249 379 AECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDA 420 (765)
Q Consensus 379 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 420 (765)
|.++...|++++|+..|+++++.+|++..++..++.+....+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.6e-31 Score=277.21 Aligned_cols=322 Identities=16% Similarity=0.121 Sum_probs=295.7
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY 203 (765)
Q Consensus 124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 203 (765)
+++.++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004249 204 VELGNFQRAADVYRQMVQLCP---ENIEALKMG------------AKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDL 268 (765)
Q Consensus 204 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 268 (765)
...|++++|+..|+++++..| +++.++..+ |.++...|++++|+..++++++..|.++. ++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE--LREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH--HHHH
Confidence 999999999999999999999 888888777 79999999999999999999999998865 7889
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHH--------
Q 004249 269 LASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESIN-------- 340 (765)
Q Consensus 269 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------- 340 (765)
+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++... |.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKL----KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT----CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence 999999999999999999999998 77888999999999999999999999999998776 66665443
Q ss_pred ----HHHHHHHccccHHHHHHHHHHHHhccCCCCCHH----HHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004249 341 ----EIADLFKNRELYSTALKYYHMLEANAGVHNDGC----LHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTL 412 (765)
Q Consensus 341 ----~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (765)
.+|.++...|++++|+..+++++.. .|+++. ++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 4488899999999999999999998 788874 466799999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcc
Q 004249 413 ASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKG 466 (765)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 466 (765)
|.++...|++++|+..++++++.+|+. ..++..++.+....+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~------------~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNEND------------QQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTC------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC------------hHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 455556665554433
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-31 Score=286.46 Aligned_cols=395 Identities=13% Similarity=-0.037 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----
Q 004249 194 KLKFHLASLYVELGNFQRAADVYRQMVQL---------CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT----- 259 (765)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----- 259 (765)
..+..+|.++..+|++++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++++.+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 44555666666666666666666666554 3444555666666666666666666666666554221
Q ss_pred CC-CHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH---hcCChhHHHHHHHhhcccCCC
Q 004249 260 EA-DFGVIDLLASMLVQM--NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHI---QLGNTDKAEILLTAIHWENVS 333 (765)
Q Consensus 260 ~~-~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~ 333 (765)
.. ...++..+|.++... +++++|+.+|++++.. .|....++..++.++. ..++.++|+..+++++... |
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 11 123445555554443 4567777777777776 5556666666665533 3466677777777777665 6
Q ss_pred ChHHHHHHHHHHHH----ccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHH
Q 004249 334 DHAESINEIADLFK----NRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR 409 (765)
Q Consensus 334 ~~~~~~~~la~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 409 (765)
.++.++..+|..+. ..|++++|+.++++++.. .|.++.++..+|.++...|++++|+..|+++++.+|++..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 66777777765543 456788999999999998 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccccccc
Q 004249 410 LTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETF 489 (765)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~ 489 (765)
..+|.+|...+....+.... ..+......+.+++|+..+.+++.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~A~~~~~~a~~--------- 328 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLREN---------------------------GMYGKRKLLELIGHAVAHLKKADE--------- 328 (472)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHhhhHHHH---------------------------HHHHHHHHHhhHHHHHHHHHHHhh---------
Confidence 99999987654333322111 112222334457888888888876
Q ss_pred ChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHH-HHHHHHhhcccccCChhhHHHHHHHHHHhCCCch
Q 004249 490 NHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKE-ELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRL 568 (765)
Q Consensus 490 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 568 (765)
.+|.+..++..+|.++...|++++|+..|++++.+.+. +.... ....++....+..|++++|+..|+++++..|++.
T Consensus 329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT--PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 56788888999999999999999999999999998732 22222 2344444355688999999999999999999986
Q ss_pred hhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHH
Q 004249 569 TTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVG 644 (765)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 644 (765)
.....+ ....+.+.+.+..+|+++.++..+|.++...|++++|+.+|++|+++.|.+|.+...+|
T Consensus 407 ~~~~~~-----------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 407 EKEKMK-----------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHH-----------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 543322 24456667788899999999999999999999999999999999999999998776555
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.5e-31 Score=285.09 Aligned_cols=391 Identities=14% Similarity=0.019 Sum_probs=196.8
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhcc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACY---------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA------- 188 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 188 (765)
...+..+|.++..+|++++|+++|++++++ +|....+|.++|.+|..+|++++|+.++++++.+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 455666777777777777777777776654 4555566677777777777777777777776654
Q ss_pred -CCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCC
Q 004249 189 -DPNDFKLKFHLASLYVEL--GNFQRAADVYRQMVQLCPENIEALKMGAKLYQK---SGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 189 -~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
.+..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.++.. .++.++|+..++++++.+|++..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 234456666666655544 356777777777777777777776666666443 45566677777777777776654
Q ss_pred HHHHHHHHHHHH----HhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHH
Q 004249 263 FGVIDLLASMLV----QMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAES 338 (765)
Q Consensus 263 ~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 338 (765)
++..+|..+. ..|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++... |+++.+
T Consensus 211 --~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 211 --LKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp --HHHHHHHHHHHCC------CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred --HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 3444544433 334566666666666666 55566666666666666666666666666666555 556666
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004249 339 INEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE 418 (765)
Q Consensus 339 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 418 (765)
+..+|.+|...+....+.. ....+......+.+++|+..|+++++.+|.+..++..+|.++..
T Consensus 284 ~~~lg~~y~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLR-----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHH-----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 6666665543221110000 00111112222334455555555555555555555555555555
Q ss_pred cCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHH-HHhcchhHHHHHhhHHHHhhhcccccccChhhHHHH
Q 004249 419 DAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRI-YKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLL 497 (765)
Q Consensus 419 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~ 497 (765)
.|++++|+.+|+++++.++... ....++..++.+ +...|++++|+..|.+++. ..|++...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---------i~~~~~~~ 408 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPV---------AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---------INQKSREK 408 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHH---------HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---------SCCCCHHH
T ss_pred hccHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------cCcccHHH
Confidence 5555555555555544433320 001122233322 2344555555555555543 22222211
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhH
Q 004249 498 IIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWN 572 (765)
Q Consensus 498 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 572 (765)
.+....+..++++++... |.++..+..+|. ++...|++++|+++|+++++..|.+|.++.
T Consensus 409 ----------~~~~~~l~~~~~~~l~~~----p~~~~~~~~LG~-~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 409 ----------EKMKDKLQKIAKMRLSKN----GADSEALHVLAF-LQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp ----------HHHHHHHHHHHHHHHHHC----C-CTTHHHHHHH-HHHHHHHCC---------------------
T ss_pred ----------HHHHHHHHHHHHHHHHhC----CCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 112223334444555544 444444444444 555555555555555555555555554443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.98 E-value=3.8e-30 Score=263.53 Aligned_cols=299 Identities=12% Similarity=0.053 Sum_probs=251.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
...++..|..++..|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 34557778888888999999999999988888888888888888888899999999999988888888888888998888
Q ss_pred HcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249 171 EQG-DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI 249 (765)
Q Consensus 171 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 249 (765)
..| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888 8888999999998888888888888999999999999999999999888888888888888888889999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc
Q 004249 250 LEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHW 329 (765)
Q Consensus 250 ~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 329 (765)
+++++...|.+.. ++..+|.++...|++++|+..+++++...+.... .
T Consensus 182 ~~~al~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------------------~ 229 (330)
T 3hym_B 182 FSQALSIAPEDPF--VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN------------------------------E 229 (330)
T ss_dssp HHHHHTTCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC------------------------------S
T ss_pred HHHHHHhCCCChH--HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc------------------------------c
Confidence 9988888888755 6778888888888888888888888877322110 0
Q ss_pred cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHH
Q 004249 330 ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR 409 (765)
Q Consensus 330 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 409 (765)
...+..+.++..+|.++...|++++|+.+|++++.. .|+++.++..+|.++...|++++|+.+|+++++.+|++..++
T Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 112445678888888888899999999999998888 788888999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHcCCHH
Q 004249 410 LTLASLL-LEDAKDE 423 (765)
Q Consensus 410 ~~l~~~~-~~~g~~~ 423 (765)
..++.++ ...|+.+
T Consensus 308 ~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 308 TMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhCchh
Confidence 9999888 4556543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=5.1e-30 Score=262.55 Aligned_cols=255 Identities=13% Similarity=0.064 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG-NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE 171 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 171 (765)
.+...+.+++..|++++|+..+++++..+|.++.++..+|.++...| ++++|+.+|++++..+|.++.++..+|.++..
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 137 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34456788899999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE 251 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (765)
.|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCC-------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249 252 DYLKGHPTE-------ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL 324 (765)
Q Consensus 252 ~~~~~~p~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 324 (765)
+++...|.. ....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL----IPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 999987431 11237788999999999999999999999888 5566677777777777777777777777
Q ss_pred HhhcccCCCChHHHHHHHHHHH-HccccH
Q 004249 325 TAIHWENVSDHAESINEIADLF-KNRELY 352 (765)
Q Consensus 325 ~~~~~~~~~~~~~~~~~la~~~-~~~g~~ 352 (765)
++++... |+++.++..++.++ ...|+.
T Consensus 294 ~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 294 HTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 7776655 66677777777766 444443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1.3e-29 Score=263.99 Aligned_cols=313 Identities=17% Similarity=0.113 Sum_probs=242.4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHH-HHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHH
Q 004249 104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMG-CYWLAACYKQKDS----SLWKLIFPWLIEQGDTTWA 178 (765)
Q Consensus 104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A 178 (765)
.+.++.+...++.+....|. ++...|++++|+. .|.+++...|.++ ..++.+|.++...|++++|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 83 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence 34444444445444444332 4455677888887 8888877777654 4577788888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004249 179 MSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHP 258 (765)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 258 (765)
+..|++++..+|.++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++...|
T Consensus 84 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 84 VLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCCCHHHHH--------------HHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHhcCChhHHHH
Q 004249 259 TEADFGVID--------------LLASMLVQMNAYDRVLKHIELVDLVYYSGKEL--LLALKIKAGICHIQLGNTDKAEI 322 (765)
Q Consensus 259 ~~~~~~~~~--------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~ 322 (765)
.+....... .++.++ ..|++++|+..+++++.. .|. ...++..+|.++...|++++|+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL----DPTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp TTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH----STTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh----CcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 765521111 466666 999999999999999998 555 68889999999999999999999
Q ss_pred HHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc
Q 004249 323 LLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL 402 (765)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 402 (765)
.+++++... |.++.++..+|.++...|++++|+..|++++.. .|+++.++..+|.++...|++++|+..|+++++..
T Consensus 239 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 239 CFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999998876 778999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCC-----------HHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249 403 EDN-----------IDARLTLASLLLEDAKDEEAISLLTPPMS 434 (765)
Q Consensus 403 p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (765)
|++ ..++..++.++...|++++|..+++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 988 89999999999999999999999987765
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=1.2e-27 Score=261.46 Aligned_cols=427 Identities=9% Similarity=-0.018 Sum_probs=327.7
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 004249 114 LHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF 193 (765)
Q Consensus 114 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 193 (765)
|+++++.+|.+..+|..++.. ...|++++|...|++++...|.+..+|..++..+...|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678899999999999999984 7889999999999999999999999999999999999999999999999999999 68
Q ss_pred HHHHHHHHH-HHHhCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhc
Q 004249 194 KLKFHLASL-YVELGNFQRAAD----VYRQMVQL---CPENIEALKMGAKLYQK---------SGQIESSVDILEDYLKG 256 (765)
Q Consensus 194 ~~~~~la~~-~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~~~~ 256 (765)
..|..++.. ....|+++.|.+ .|++++.. +|.+..+|...+..... .|+++.|..+|++++.
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~- 158 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV- 158 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence 888888854 445677777665 78887764 45677888888887765 7899999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-------------HHhccHHHHHHHHHHHHHH---hcC----CCCc-------cHHHHHHHHH
Q 004249 257 HPTEADFGVIDLLASML-------------VQMNAYDRVLKHIELVDLV---YYS----GKEL-------LLALKIKAGI 309 (765)
Q Consensus 257 ~p~~~~~~~~~~l~~~~-------------~~~~~~~~A~~~~~~~~~~---~~~----~~~~-------~~~~~~~l~~ 309 (765)
.|.......|...+... ...+++..|...+...... +.. -.|. ....+.....
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 57654322333333221 1346677787776653221 111 0111 1233333332
Q ss_pred HHHh----cCCh----hHHHHHHHhhcccCCCChHHHHHHHHHHHHc-------cccHH-------HHHHHHHHHHh-cc
Q 004249 310 CHIQ----LGNT----DKAEILLTAIHWENVSDHAESINEIADLFKN-------RELYS-------TALKYYHMLEA-NA 366 (765)
Q Consensus 310 ~~~~----~~~~----~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~~~-~~ 366 (765)
.... .++. ..++..|++++... |.++.+|..+|..+.. .|+++ +|+..|++++. .
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~- 316 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL- 316 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-
Confidence 2221 1232 37778899988776 7889999999998875 68876 89999999997 6
Q ss_pred CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccc
Q 004249 367 GVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI-DARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKT 445 (765)
Q Consensus 367 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 445 (765)
.|+++.+|..+|.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++|..+|+++++..|..
T Consensus 317 -~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~------ 389 (530)
T 2ooe_A 317 -LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------ 389 (530)
T ss_dssp -CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC------
T ss_pred -CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc------
Confidence 789999999999999999999999999999999999885 589999999999999999999999998876543
Q ss_pred hhhhhhhHHHHHHHHH-HHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 004249 446 HAWWLNIRIKIKLCRI-YKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKL 524 (765)
Q Consensus 446 ~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 524 (765)
..++...+.+ +...|++++|...|.+++. ..|+++.++..++..+...|++++|..+|++++..
T Consensus 390 ------~~~~~~~a~~~~~~~~~~~~A~~~~e~al~---------~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 390 ------HHVYVTAALMEYYCSKDKSVAFKIFELGLK---------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp ------THHHHHHHHHHHHHTCCHHHHHHHHHHHHH---------HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred ------hHHHHHHHHHHHHHcCChhHHHHHHHHHHH---------HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 2344444444 3458899999999999886 56888899999999999999999999999999987
Q ss_pred ccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCch
Q 004249 525 GYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRL 568 (765)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 568 (765)
.+. .|.....++..........|+.+.+..+++++++..|++.
T Consensus 455 ~~~-~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 455 GSL-PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp CCS-CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 632 1333344444434366678999999999999999988643
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=1.8e-26 Score=249.35 Aligned_cols=403 Identities=9% Similarity=-0.022 Sum_probs=334.4
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 004249 110 AISVLHEVIRLEEELPNSYHILGLVHDA----LGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE----QGDTTWAMSC 181 (765)
Q Consensus 110 A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 181 (765)
++..++++. .+.++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 26 ~~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 345555543 46788999999999998 89999999999999875 678999999999999 9999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004249 182 LSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK----SGQIESSVDILEDY 253 (765)
Q Consensus 182 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 253 (765)
|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++... .++.++..+|.+|.. .+++++|+.+|+++
T Consensus 102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999874 588999999999998 88999999999999875 578999999999998 88999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCChhHHHHHHH
Q 004249 254 LKGHPTEADFGVIDLLASMLVQ----MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ----LGNTDKAEILLT 325 (765)
Q Consensus 254 ~~~~p~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 325 (765)
++.. + ..++..+|.+|.. .+++++|+.+|+++... ....+...+|.++.. .+++++|+.+|+
T Consensus 178 ~~~~--~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 178 AEQG--N--VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS------GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHTT--C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHCC--C--HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8863 3 3478899999998 89999999999999875 356788899999987 889999999999
Q ss_pred hhcccCCCChHHHHHHHHHHHHc----cccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh-----ccHHHHHHHHH
Q 004249 326 AIHWENVSDHAESINEIADLFKN----RELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL-----KEREKSIIYFY 396 (765)
Q Consensus 326 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~ 396 (765)
++... .++.+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+
T Consensus 248 ~a~~~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 248 QSAEQ---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHTT---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 98754 457889999999988 89999999999998754 5788999999999998 89999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcC---CHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHh----cchhH
Q 004249 397 KALQILEDNIDARLTLASLLLEDA---KDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA----KGMIE 469 (765)
Q Consensus 397 ~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~ 469 (765)
++++. .++.+++.+|.++...| ++++|+.+|+++.+.. . +.+++.+|.+|.. .++++
T Consensus 321 ~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~------------~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 321 KSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--E------------KAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--C------------HHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--C------------HHHHHHHHHHHHcCCCCCCCHH
Confidence 99875 56789999999998876 7889999998887652 1 4678889999988 88999
Q ss_pred HHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhccc
Q 004249 470 GFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLAS----LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPC 545 (765)
Q Consensus 470 ~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 545 (765)
+|+..+.+++. ..++.++..+|.+|.. .+++++|..+|++++...+. .|.++.....++. ++.
T Consensus 385 ~A~~~~~~A~~-----------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-~~~~~~a~~~l~~-~~~ 451 (490)
T 2xm6_A 385 QAAIWMRKAAE-----------QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN-LFGTENRNITEKK-LTA 451 (490)
T ss_dssp HHHHHHHHHHH-----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHTT-SCH
T ss_pred HHHHHHHHHHh-----------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC-CcCCHHHHHHHHh-cCH
Confidence 99999988874 2357788999999988 78999999999999988732 0224555555544 433
Q ss_pred ccCChhhHHHHHHHHHHhCCCch
Q 004249 546 NTTDPKLWFDGVRFMVKLHPHRL 568 (765)
Q Consensus 546 ~~g~~~~A~~~~~~~l~~~p~~~ 568 (765)
.+...|....++.++..|++.
T Consensus 452 --~~~~~a~~~a~~~~~~~~~~~ 472 (490)
T 2xm6_A 452 --KQLQQAELLSQQYIEKYAPEA 472 (490)
T ss_dssp --HHHHHHHHHHHHHHHHHCHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777666543
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=1.4e-26 Score=250.21 Aligned_cols=386 Identities=13% Similarity=0.046 Sum_probs=333.8
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHH
Q 004249 91 IRRMLGDASLHYA----LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDA----LGNTAKAMGCYWLAACYKQKDSSLW 162 (765)
Q Consensus 91 ~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~ 162 (765)
....+..|..+.. .+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 114 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQ 114 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 3455666788888 89999999999999876 678999999999999 99999999999999875 588999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249 163 KLIFPWLIE----QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGA 234 (765)
Q Consensus 163 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 234 (765)
+.+|.+|.. .+++++|+.+|+++... .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg 190 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 999999999 89999999999999874 689999999999998 88999999999999886 5789999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004249 235 KLYQK----SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ----MNAYDRVLKHIELVDLVYYSGKELLLALKIK 306 (765)
Q Consensus 235 ~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 306 (765)
.+|.. .+++++|+.+|+++.+.. + ..++..+|.++.. .+++++|+.+|+++... ....+.+.
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~ 260 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG--D--ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ------GNSIAQFR 260 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT------TCHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC--C--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHH
Confidence 99998 899999999999999864 2 3378899999997 89999999999999865 45678899
Q ss_pred HHHHHHh----cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHhccCCCCCHHHHHH
Q 004249 307 AGICHIQ----LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNR-----ELYSTALKYYHMLEANAGVHNDGCLHLK 377 (765)
Q Consensus 307 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 377 (765)
+|.++.. .+++++|+.+|+++... .++.+++.+|.++... +++++|+.+|+++.+. .++.+++.
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~ 333 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQAN 333 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHH
Confidence 9999998 89999999999998753 4678999999999887 9999999999999865 46789999
Q ss_pred HHHHHHHhc---cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHhcCCCCCccccccCcccchhhhh
Q 004249 378 IAECSLALK---EREKSIIYFYKALQILEDNIDARLTLASLLLE----DAKDEEAISLLTPPMSLENKYVNSDKTHAWWL 450 (765)
Q Consensus 378 la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (765)
+|.+|...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+...
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------------- 398 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL------------- 398 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC-------------
Confidence 999999866 899999999999986 679999999999999 8999999999999887432
Q ss_pred hhHHHHHHHHHHHh----cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 004249 451 NIRIKIKLCRIYKA----KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLG 525 (765)
Q Consensus 451 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 525 (765)
+.+++.+|.+|.. .+++++|+..|.+++.... ..|.++.+...++.++.. +.+.|.+..++.++..
T Consensus 399 -~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~------~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 399 -SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM------NLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKY 468 (490)
T ss_dssp -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC------CHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------CCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHH
Confidence 4678899999998 8999999999999986320 116688888888887654 4455555555555544
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=6.4e-29 Score=258.70 Aligned_cols=294 Identities=15% Similarity=0.088 Sum_probs=263.1
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 004249 100 LHYALGRYEEAIS-VLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD 174 (765)
Q Consensus 100 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 174 (765)
++...|+|++|+. .|++++...|.++ ..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4566799999999 9999998888764 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHH
Q 004249 175 TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK----------------MGAKLYQ 238 (765)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~ 238 (765)
+++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+...+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999999999999876654 466666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChh
Q 004249 239 KSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTD 318 (765)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (765)
..|++++|+..+++++...|......++..+|.++...|++++|+..+++++.. .|....++..+|.++...|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999655558889999999999999999999999999 6778889999999999999999
Q ss_pred HHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC-----------HHHHHHHHHHHHHhcc
Q 004249 319 KAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND-----------GCLHLKIAECSLALKE 387 (765)
Q Consensus 319 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~la~~~~~~g~ 387 (765)
+|+..|++++... |.++.++..+|.++...|++++|+.+|++++.. .|++ +.+|..+|.++...|+
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 9999999998876 788999999999999999999999999999998 6766 8999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004249 388 REKSIIYFYKALQI 401 (765)
Q Consensus 388 ~~~A~~~~~~al~~ 401 (765)
+++|..+++++++.
T Consensus 346 ~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 346 SDAYGAADARDLST 359 (368)
T ss_dssp GGGHHHHHTTCHHH
T ss_pred hHhHHHhHHHHHHH
Confidence 99999999887765
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.1e-27 Score=248.96 Aligned_cols=283 Identities=14% Similarity=0.062 Sum_probs=240.7
Q ss_pred HHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004249 146 GCYWLAACYKQKDS----SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ 221 (765)
Q Consensus 146 ~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 221 (765)
..+.+.....+.++ ..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44555555555444 44888999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 004249 222 LCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFG--------VIDLLASMLVQMNAYDRVLKHIELVDLVY 293 (765)
Q Consensus 222 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 293 (765)
.+|+++.++..+|.+|...|++++|+..++++++..|.+.... .+..+|.++...|++++|+..+++++..
T Consensus 128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 206 (365)
T 4eqf_A 128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ- 206 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH-
T ss_pred cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999888755411 2234589999999999999999999999
Q ss_pred cCCCCc--cHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC
Q 004249 294 YSGKEL--LLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND 371 (765)
Q Consensus 294 ~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 371 (765)
.|. ...++..+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++.. .|++
T Consensus 207 ---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 280 (365)
T 4eqf_A 207 ---NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGF 280 (365)
T ss_dssp ---SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred ---CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc
Confidence 555 77889999999999999999999999998877 778999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC------------HHHHHHHHHHHHHcCCHHHHHHhcCCCCCc
Q 004249 372 GCLHLKIAECSLALKEREKSIIYFYKALQILEDN------------IDARLTLASLLLEDAKDEEAISLLTPPMSL 435 (765)
Q Consensus 372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (765)
+.++..+|.++...|++++|+..|++++++.|+. ..+|..++.++...|+.+.+....++.++.
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999873 578899999999999999999998876553
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=1.1e-25 Score=245.95 Aligned_cols=436 Identities=10% Similarity=-0.006 Sum_probs=327.9
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249 148 YWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI 227 (765)
Q Consensus 148 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 227 (765)
++++++.+|.+..+|..++.. ...|++++|...|++++..+|.+..+|..++..+...|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 678889999999999999984 7899999999999999999999999999999999999999999999999999999 67
Q ss_pred HHHHHHHH-HHHHcCCHHHHHH----HHHHHHhcCCCCC-CHHHHHHHHHHHHH---------hccHHHHHHHHHHHHHH
Q 004249 228 EALKMGAK-LYQKSGQIESSVD----ILEDYLKGHPTEA-DFGVIDLLASMLVQ---------MNAYDRVLKHIELVDLV 292 (765)
Q Consensus 228 ~~~~~la~-~~~~~g~~~~A~~----~~~~~~~~~p~~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~ 292 (765)
..|..++. +....|++++|.+ .|++++...+.++ ...+|..++..... .|+++.|..+|++++..
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 78888875 4456788877765 7777776533222 24477788887765 78899999999999874
Q ss_pred hcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHH------HHhcc
Q 004249 293 YYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHM------LEANA 366 (765)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------~~~~~ 366 (765)
|. ......+..........|. ..+.. .+....+++..|...+.. .+...
T Consensus 160 -P~--~~~~~~~~~~~~~e~~~~~-~~~~~---------------------~l~~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 160 -PM--INIEQLWRDYNKYEEGINI-HLAKK---------------------MIEDRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp -CC--TTHHHHHHHHHHHHHHHCH-HHHHH---------------------HHHTTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred -hh--hhHHHHHHHHHHHHHhhch-hHHHH---------------------HHHHhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 1112222222221111110 00000 011234567777766665 33211
Q ss_pred ---CCCCC-------HHHHHHHHHHHHHh----cc----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------cCC
Q 004249 367 ---GVHND-------GCLHLKIAECSLAL----KE----REKSIIYFYKALQILEDNIDARLTLASLLLE-------DAK 421 (765)
Q Consensus 367 ---~~~~~-------~~~~~~la~~~~~~----g~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~g~ 421 (765)
..|.. ...|.......... ++ ...++..|++++..+|.++++|+.++..+.. .|+
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccc
Confidence 02221 23444433222221 12 2478899999999999999999999999986 799
Q ss_pred HH-------HHHHhcCCCCC-ccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249 422 DE-------EAISLLTPPMS-LENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE 493 (765)
Q Consensus 422 ~~-------~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 493 (765)
++ +|+.++++++. ..|.. ..++..++.++...|++++|...|.+++. ..|.
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~------------~~l~~~~~~~~~~~g~~~~A~~~~~~al~---------~~p~ 353 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKN------------MLLYFAYADYEESRMKYEKVHSIYNRLLA---------IEDI 353 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------SSSS
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCccc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhC---------cccc
Confidence 87 99999999997 67776 68899999999999999999999999996 5566
Q ss_pred HH-HHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhH
Q 004249 494 HR-LLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWN 572 (765)
Q Consensus 494 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 572 (765)
++ .++..++.++.+.|++++|+.+|+++++.. |.........+...+...|++++|...|+++++.+|+++.+|.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~ 429 (530)
T 2ooe_A 354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 429 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT----TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHH
Confidence 54 589999999999999999999999999876 3333333343442344689999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCC----chhhhhhhhhhhhhHHHHHHHHHHHHhhCCCC
Q 004249 573 RYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVP----PIIISGHQFTMISHHQDAAREYLEAYKLLPEN 636 (765)
Q Consensus 573 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~ 636 (765)
.++.+....|+. +.+...+.+.+...|.++. ++...+......|+.+.+...+.++++..|++
T Consensus 430 ~~~~~~~~~g~~-~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 430 AYIDYLSHLNED-NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHTTTTCH-HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhCCCH-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 999998877765 6888999999988776554 34445666667899999999999999999953
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=9.2e-28 Score=249.52 Aligned_cols=266 Identities=14% Similarity=0.076 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 206 (765)
.++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 35555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 004249 207 GNFQRAADVYRQMVQLCPENIEALKM----------GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM 276 (765)
Q Consensus 207 g~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 276 (765)
|++++|+..|+++++..|++..++.. +|.++...|++++|+..+++++...|......++..+|.++...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 55555555555555555544333332 25566666666666666666666666533333555666666666
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHH
Q 004249 277 NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTAL 356 (765)
Q Consensus 277 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 356 (765)
|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+
T Consensus 227 g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTV----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp TCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 6666666666666665 44555566666666666666666666666665554 555666666777777777777777
Q ss_pred HHHHHHHhccCCCC------------CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249 357 KYYHMLEANAGVHN------------DGCLHLKIAECSLALKEREKSIIYFYKAL 399 (765)
Q Consensus 357 ~~~~~~~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 399 (765)
.+|++++.+ .|+ +..+|..++.++..+|+.+.+.....+.+
T Consensus 302 ~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 302 SNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 777766665 333 35677888888888888887777665543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=5.3e-26 Score=232.26 Aligned_cols=284 Identities=14% Similarity=0.037 Sum_probs=202.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
..++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH-HH-HHHHhccHHHHH
Q 004249 206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLL-AS-MLVQMNAYDRVL 283 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l-~~-~~~~~~~~~~A~ 283 (765)
.|++++|+..+++++...|.+...+..+... .|.... ...+ +. ++...|++++|+
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~---~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQA--------------------DVDIDD---LNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC-------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHH--------------------HHHHHH---HHHHHHhHHHHHcccHHHHH
Confidence 5555555555555555555444333222100 000000 1122 44 577888999999
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 004249 284 KHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLE 363 (765)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 363 (765)
..+++++.. .+....++..+|.++...|++++|+..+++++... |.++.++..+|.++...|++++|+..|++++
T Consensus 159 ~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 159 TLLHAALEM----NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999888 66678888889999999999999999999988776 7788999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC------------CHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 004249 364 ANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED------------NIDARLTLASLLLEDAKDEEAISLLTP 431 (765)
Q Consensus 364 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (765)
.. .|.++.++..+|.++...|++++|+..|++++...|. +..++..++.++...|++++|..++++
T Consensus 234 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 234 DI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred Hc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99 8999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred CCCccccc
Q 004249 432 PMSLENKY 439 (765)
Q Consensus 432 ~~~~~~~~ 439 (765)
+++..+..
T Consensus 312 ~l~~~~~~ 319 (327)
T 3cv0_A 312 NVEPFAKE 319 (327)
T ss_dssp CSHHHHHH
T ss_pred HHHhcchh
Confidence 98865543
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=2.1e-26 Score=236.14 Aligned_cols=259 Identities=11% Similarity=0.092 Sum_probs=203.4
Q ss_pred HHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHH
Q 004249 117 VIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD-TTWAMSCLSEAVKADPNDFKL 195 (765)
Q Consensus 117 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 195 (765)
++..+|++..++..+|.++...|++++|+..|++++.++|++..+|..+|.++..+|+ +++|+.+|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 5566777888888888888888899999999999998889888888889988888886 889999999988888888888
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 004249 196 KFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ 275 (765)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 275 (765)
|..+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++.+|.+.. +|+.+|.++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~--a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS--VWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHH
Confidence 8888988888888888888888888888888888888888888888888888888888888888766 77888888888
Q ss_pred -hccHHHH-----HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc
Q 004249 276 -MNAYDRV-----LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNR 349 (765)
Q Consensus 276 -~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 349 (765)
.|.+++| +..|++++.+ . |.+..+|..++.++...
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l--------------------------------------~-P~~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKL--------------------------------------V-PHNESAWNYLKGILQDR 287 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHH--------------------------------------S-TTCHHHHHHHHHHHTTT
T ss_pred hcCcchHHHHHHHHHHHHHHHHH--------------------------------------C-CCCHHHHHHHHHHHHcc
Confidence 4444666 3555555555 3 55556666666666655
Q ss_pred c--cHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhc--------c-HHHHHHHHHHH-HHHcCCCHHHHHHHHHHHH
Q 004249 350 E--LYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALK--------E-REKSIIYFYKA-LQILEDNIDARLTLASLLL 417 (765)
Q Consensus 350 g--~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~ 417 (765)
| ++++|+..+.++ .. .|+++.++..+|.+|..+| + +++|+.+|+++ ++++|.....|..++..+.
T Consensus 288 g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 288 GLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp CGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 5 566777777666 44 6777777777777777764 2 47777777777 7777777777777777665
Q ss_pred Hc
Q 004249 418 ED 419 (765)
Q Consensus 418 ~~ 419 (765)
..
T Consensus 365 ~~ 366 (382)
T 2h6f_A 365 SK 366 (382)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1e-26 Score=238.51 Aligned_cols=223 Identities=11% Similarity=0.052 Sum_probs=196.5
Q ss_pred CCCcHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCCHHHH
Q 004249 85 KKVCPE-IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGN-TAKAMGCYWLAACYKQKDSSLW 162 (765)
Q Consensus 85 ~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~ 162 (765)
...+|+ ...+...|.++...|++++|+..|++++..+|++..+|+.+|.++..+|+ +++|+.+|++++.++|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 344454 44566788999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Q 004249 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK-SG 241 (765)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g 241 (765)
..+|.++..+|++++|+.+|++++.++|++..+|..+|.++...|++++|+.+|+++++++|.+..+|..+|.++.. .|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 56
Q ss_pred CHHHH-----HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 004249 242 QIESS-----VDILEDYLKGHPTEADFGVIDLLASMLVQMN--AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL 314 (765)
Q Consensus 242 ~~~~A-----~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (765)
.+++| +.+|++++.++|++.. +|+.++.++...| ++++|+..+.++ .. .+....++..+|.++...
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~~~~--a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~----~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPHNES--AWNYLKGILQDRGLSKYPNLLNQLLDL-QP----SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHTTTCGGGCHHHHHHHHHH-TT----TCCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHccCccchHHHHHHHHHh-cc----CCCCHHHHHHHHHHHHHH
Confidence 65888 5999999999999877 8889999998877 577777777665 33 444445555555555444
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=2.4e-26 Score=234.84 Aligned_cols=234 Identities=13% Similarity=0.126 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
....++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHL--------------AS-LYVELGNFQRAADVYRQMVQLCPENIEALKMGA 234 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 234 (765)
...|++++|+..+++++...|.+...+..+ +. ++...|++++|+..++++++..|.++.++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999999999999999988777776 55 577778888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 004249 235 KLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL 314 (765)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (765)
.++...|++++|+..+++++...|++.. ++..+|.++...|++++|+..+++++.. .|....++..+|.++...
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQ--LWNKLGATLANGNRPQEALDAYNRALDI----NPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888777654 6677888888888888888888777776 444444444455555455
Q ss_pred CChhHHHHHHHhhcc
Q 004249 315 GNTDKAEILLTAIHW 329 (765)
Q Consensus 315 ~~~~~A~~~~~~~~~ 329 (765)
|++++|+..+++++.
T Consensus 254 g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIY 268 (327)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 544444444444443
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=2.9e-25 Score=210.89 Aligned_cols=194 Identities=20% Similarity=0.234 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ 172 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 172 (765)
.++..|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 86 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL 86 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 33444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004249 173 -----------GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241 (765)
Q Consensus 173 -----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 241 (765)
|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.++...|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 87 YRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMG 165 (217)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcC
Confidence 555555555555555555555555555555555555555555555555555 55555555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289 (765)
Q Consensus 242 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 289 (765)
++++|+..|+++++.+|+++. ++..+|.++...|++++|+..++++
T Consensus 166 ~~~~A~~~~~~al~~~P~~~~--~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 166 RLDEALAQYAKALEQAPKDLD--LRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp CHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHTC--------------
T ss_pred CHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555443 4445555555555555555555443
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=1.5e-24 Score=205.90 Aligned_cols=199 Identities=17% Similarity=0.137 Sum_probs=171.5
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249 122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201 (765)
Q Consensus 122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 201 (765)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 004249 202 LYVEL-----------GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLA 270 (765)
Q Consensus 202 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 270 (765)
++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+ +++. ++..+|
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~--~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPE--IRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH--HHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH--HHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999998 5544 788999
Q ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhh
Q 004249 271 SMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAI 327 (765)
Q Consensus 271 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 327 (765)
.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..++++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ----APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999998 7777888888888888888888888888776
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=5.1e-24 Score=211.61 Aligned_cols=279 Identities=10% Similarity=0.022 Sum_probs=183.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 004249 98 ASLHYALGRYEEAISVLHEVIRLEEEL-PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT 176 (765)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 176 (765)
....+..|+|..|+..++++...+|.+ .++...++.+|..+|+++.|+..++. .+|....++..++..+...|+.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 455677888888888887766666655 35667778888888888888876654 24445566777777888888888
Q ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 177 WAMSCLSEAVKA--DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYL 254 (765)
Q Consensus 177 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 254 (765)
+|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..+|.++..+|++++|+..+++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888887765 578888888888888888888888888777 7777788888888888888888888888888
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 004249 255 KGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD 334 (765)
Q Consensus 255 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 334 (765)
+.+|++........+..++...|++++|+..|++++.. . |.
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------------------------------------~-p~ 198 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------------------------------------C-SP 198 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------------------------------------S-CC
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------------------------------------C-CC
Confidence 87776532111011112222335666666666666555 3 44
Q ss_pred hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHcCCCHHHHHHHH
Q 004249 335 HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREK-SIIYFYKALQILEDNIDARLTLA 413 (765)
Q Consensus 335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~l~ 413 (765)
++.++..+|.++...|++++|+..|++++.. +|+++.++.++|.++...|+..+ +..+++++++.+|+++.+.
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~---- 272 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK---- 272 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----
Confidence 5555666666666666666666666666666 56666666666666666666544 3455566666666665433
Q ss_pred HHHHHcCCHHHHHHhc
Q 004249 414 SLLLEDAKDEEAISLL 429 (765)
Q Consensus 414 ~~~~~~g~~~~A~~~~ 429 (765)
.+..+.+.|+++..-|
T Consensus 273 d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 273 EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 2344455555555444
No 32
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.93 E-value=2.9e-24 Score=227.94 Aligned_cols=342 Identities=15% Similarity=0.048 Sum_probs=247.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNT---AKAMGCYWLAACYKQKDSSLWKLIFPWLIE 171 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 171 (765)
...|..+++.|++++|+..|+++.+. .++.+++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 34678899999999999999999765 6788999999999999999 9999999999965 77889999997777
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249 172 QG-----DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA---ADVYRQMVQLCPENIEALKMGAKLYQKSGQI 243 (765)
Q Consensus 172 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 243 (765)
.+ ++++|+.+|++++.. .++.+++.+|.+|...+...++ ...+.++.. +.++.+++.+|.+|...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCc
Confidence 66 788999999999984 4556899999999987765444 444444443 34577899999999999966
Q ss_pred HHHHHH----HHHHHhcCCCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc--
Q 004249 244 ESSVDI----LEDYLKGHPTEADFGVIDLLASMLVQMN---AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL-- 314 (765)
Q Consensus 244 ~~A~~~----~~~~~~~~p~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 314 (765)
+++... ++.+...+| . +++.+|.+|...| ++++|+.+|+++... .+.....++.+|.+|...
T Consensus 158 ~~~~~~a~~~~~~a~~~~~---~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTD---I--CYVELATVYQKKQQPEQQAELLKQMEAGVSR----GTVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCT---T--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCSCHHHHHHHHHHHTCGGG
T ss_pred ccCHHHHHHHHHHHHcCCH---H--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCC
Confidence 655555 444433333 3 6889999999999 999999999999988 666777778899988665
Q ss_pred --CChhHHHHHHHhhcccCCCChHHHHHHHHHH-H--HccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhc---
Q 004249 315 --GNTDKAEILLTAIHWENVSDHAESINEIADL-F--KNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALK--- 386 (765)
Q Consensus 315 --~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--- 386 (765)
+++++|+.+|+++. +.++.+++.+|.+ + ...+++++|+.+|+++... .++.+++.+|.+|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----DQPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp SSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH-HCSSS
T ss_pred CCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH-cCCCC
Confidence 78999999999986 5678889999988 5 5788999999999998854 47889999999988 56
Q ss_pred --cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHH
Q 004249 387 --EREKSIIYFYKALQILEDNIDARLTLASLLLE----DAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCR 460 (765)
Q Consensus 387 --~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (765)
++++|+.+|+++. |.++.+.+.+|.+|.. ..++++|+.+|+++.+... +.+.+.+|.
T Consensus 300 ~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--------------~~A~~~Lg~ 362 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--------------NSADFAIAQ 362 (452)
T ss_dssp CCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--------------TTHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--------------HHHHHHHHH
Confidence 8999999999988 8889999999988876 3377888888777665322 245666777
Q ss_pred HHHh----cchhHHHHHhhHHHHh
Q 004249 461 IYKA----KGMIEGFVDMLLPLVC 480 (765)
Q Consensus 461 ~~~~----~~~~~~A~~~~~~~~~ 480 (765)
+|.. ..++.+|...|..+..
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHH
Confidence 6664 3466667766666653
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=2.2e-24 Score=213.82 Aligned_cols=256 Identities=14% Similarity=0.026 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHH
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD----SSLWKLIFPW 168 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la~~ 168 (765)
.++..|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|.+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 4567788889999999999999999999999888999999999999999999999999988 3333 3458888999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD 248 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 248 (765)
+...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|+++++..|.++.++..+|...+..+++++|+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888899999999999999999999999988888888888888845555568899999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHH
Q 004249 249 ILEDYLKGHPTEADFGVIDLLASMLVQMNA---YDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT 325 (765)
Q Consensus 249 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 325 (765)
.|+++++.+|++.. ++..+|.++...|+ +++|+..++++++..... +...
T Consensus 164 ~~~~a~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~------------------------ 216 (272)
T 3u4t_A 164 SFVKVLELKPNIYI--GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG-GAKY------------------------ 216 (272)
T ss_dssp HHHHHHHHSTTCHH--HHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG-GGGG------------------------
T ss_pred HHHHHHHhCccchH--HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc-cccc------------------------
Confidence 99999888888754 67788888888888 788888888888773211 1100
Q ss_pred hhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 004249 326 AIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLA 384 (765)
Q Consensus 326 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 384 (765)
......++..+|.++...|++++|+.+|++++.+ +|+++.++-.++.+...
T Consensus 217 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 217 ------KDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHC-----
T ss_pred ------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHHhhhhhcc
Confidence 0112345666666666667777777777777766 67676666666555443
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.93 E-value=2.1e-21 Score=216.79 Aligned_cols=381 Identities=11% Similarity=0.064 Sum_probs=288.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCC----CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249 98 ASLHYALGRYEEAISVLHEVIRLEEE----LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173 (765)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 173 (765)
+..++..|.+.+|+++|++++ ..|+ +......++.+..+. +..+...+..+.-..+ ...+|.++...|
T Consensus 992 vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIANIAISNE 1063 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHHHHHHhCC
Confidence 355779999999999999998 4444 334444455544444 4444444444432211 233899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY 253 (765)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 253 (765)
.+++|..+|+++- ....+ +...+...|++++|.++++++ +.+.+|+.+|.++...|++++|+..|.++
T Consensus 1064 lyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 9999999999973 11221 233344889999999999876 66899999999999999999999999886
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCC
Q 004249 254 LKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVS 333 (765)
Q Consensus 254 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 333 (765)
+++. .+..++.++.+.|++++|+++|..+.+..+ ...+...+|.+|.+++++++ ++.|.. .+
T Consensus 1132 -----dD~s--ay~eVa~~~~~lGkyEEAIeyL~mArk~~~-----e~~Idt~LafaYAKl~rlee-le~fI~-----~~ 1193 (1630)
T 1xi4_A 1132 -----DDPS--SYMEVVQAANTSGNWEELVKYLQMARKKAR-----ESYVETELIFALAKTNRLAE-LEEFIN-----GP 1193 (1630)
T ss_pred -----CChH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----cccccHHHHHHHHhhcCHHH-HHHHHh-----CC
Confidence 4443 688999999999999999999999988721 11222358999999999885 444422 13
Q ss_pred ChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004249 334 DHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA 413 (765)
Q Consensus 334 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 413 (765)
. ...+..+|..+...|++++|..+|.++ ..|..+|.++.++|++++|++.++++ .+..+|...+
T Consensus 1194 n-~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~ 1257 (1630)
T 1xi4_A 1194 N-NAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVC 1257 (1630)
T ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHH
Confidence 3 456668999999999999999999874 46889999999999999999999998 5678999999
Q ss_pred HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249 414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE 493 (765)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 493 (765)
.++...|++..|..+... +..+|+ .+..++..|...|.+++|+..+...+. .++.
T Consensus 1258 ~acve~~Ef~LA~~cgl~-Iiv~~d---------------eLeeli~yYe~~G~feEAI~LlE~aL~---------Lera 1312 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-IVVHAD---------------ELEELINYYQDRGYFEELITMLEAALG---------LERA 1312 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-hhcCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHhc---------cChh
Confidence 999999999999998764 433333 355888999999999999999988886 6788
Q ss_pred HHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHH
Q 004249 494 HRLLIIDLCKTLAS--LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGV 557 (765)
Q Consensus 494 ~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 557 (765)
+...+..+|.++.+ .++..+++++|...+.+.+.-..-+...++.-+..+|.+-|+++.|+...
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999888888865 67888999999877765411000123344445555888999999998544
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=3e-24 Score=212.79 Aligned_cols=254 Identities=11% Similarity=-0.024 Sum_probs=196.5
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND----FKLKFHLA 200 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 200 (765)
++.++..|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 456788899999999999999999999999998888899999999999999999999999988 4433 34588899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHH
Q 004249 201 SLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD 280 (765)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 280 (765)
.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.+.. ++..+|...+..++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK--VFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH--HHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHH--HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888999999999999999999999999888887765 6778884444455888
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC---hhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHH
Q 004249 281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGN---TDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALK 357 (765)
Q Consensus 281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 357 (765)
+|+..|+++++. .|....++..+|.++...|+ +++|+..++
T Consensus 160 ~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-------------------------------- 203 (272)
T 3u4t_A 160 KADSSFVKVLEL----KPNIYIGYLWRARANAAQDPDTKQGLAKPYYE-------------------------------- 203 (272)
T ss_dssp HHHHHHHHHHHH----STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH--------------------------------
T ss_pred HHHHHHHHHHHh----CccchHHHHHHHHHHHHcCcchhhHHHHHHHH--------------------------------
Confidence 888888888877 44555555555655555555 444444444
Q ss_pred HHHHHHhccC-CCC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 004249 358 YYHMLEANAG-VHN-----DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDA 420 (765)
Q Consensus 358 ~~~~~~~~~~-~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 420 (765)
+++.... .|+ ...++..+|.++...|++++|+.+|+++++++|+++.++..++.+....+
T Consensus 204 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 204 ---KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp ---HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ---HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 4443310 122 23678899999999999999999999999999999999999888776544
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=9.9e-24 Score=209.51 Aligned_cols=256 Identities=11% Similarity=0.047 Sum_probs=206.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249 133 LVHDALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR 211 (765)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 211 (765)
...+..|+|.+|+..++++...+|++. ++...++++|...|++++|+..++. .+|....++..++..+...|++++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 455667888888888888777777663 5667788888888888888877755 245566777788888888888888
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 212 AADVYRQMVQL--CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289 (765)
Q Consensus 212 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 289 (765)
|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |.+.. ++..+|.++..+|++++|+..++++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~--~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE--CMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH--HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888765 588888888888888888888888888876 54444 6677888888888888888888888
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHH--HHHHHHccccHHHHHHHHHHHHhccC
Q 004249 290 DLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINE--IADLFKNRELYSTALKYYHMLEANAG 367 (765)
Q Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~~ 367 (765)
+.. .|.. ...... ...++...|++++|+.+|++++..
T Consensus 157 ~~~----~p~~-----------------------------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-- 195 (291)
T 3mkr_A 157 QDQ----DEDA-----------------------------------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-- 195 (291)
T ss_dssp HHH----CTTC-----------------------------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--
T ss_pred Hhh----CcCc-----------------------------------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--
Confidence 776 2222 111111 123334669999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHH-HHHhcCCCCCccccc
Q 004249 368 VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEE-AISLLTPPMSLENKY 439 (765)
Q Consensus 368 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~ 439 (765)
.|+++.++..+|.++...|++++|+..|+++++.+|++++++..+|.++...|+.++ +..+++++++.+|+.
T Consensus 196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 899999999999999999999999999999999999999999999999999999976 578999999988876
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1e-23 Score=207.13 Aligned_cols=239 Identities=14% Similarity=0.064 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 004249 159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-------IEALK 231 (765)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 231 (765)
...+..+|.++...|++++|+.+|++++..+ .++.++..+|.++...|++++|+..++++++..|.+ +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3455556666666666666666666666665 556666666666666666666666666666655544 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004249 232 MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICH 311 (765)
Q Consensus 232 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 311 (765)
.+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++.. .+....++..+|.++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT----------ADILTKLRNAEKELKKAEAEAYV----NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch----------hHHHHHHhHHHHHHHHHHHHHHc----CcchHHHHHHHHHHH
Confidence 6666666666666666666666666554 24566667777777777777776 566667777777777
Q ss_pred HhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249 312 IQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKS 391 (765)
Q Consensus 312 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 391 (765)
...|++++|+..+++++... |.++.++..+|.++...|++++|+.+|++++.. .|+++.++..+|.++...|++++|
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77788888888777777666 667888899999999999999999999999988 898999999999999999999999
Q ss_pred HHHHHHHHHHc------CCCHHHHHHHHHH
Q 004249 392 IIYFYKALQIL------EDNIDARLTLASL 415 (765)
Q Consensus 392 ~~~~~~al~~~------p~~~~~~~~l~~~ 415 (765)
+..|+++++.+ |.+..++..++.+
T Consensus 227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 227 LETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999999998 8888777776654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2e-23 Score=204.97 Aligned_cols=226 Identities=14% Similarity=0.117 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------HHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD-------SSLW 162 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~ 162 (765)
.+..+...|..++..|++++|+..|++++..+ .++.++..+|.++...|++++|+..+.+++...|.+ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 45667778888888899999999999888888 888888888988888899999999998888887766 6788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ 242 (765)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 242 (765)
..+|.++...|++++|+..|++++...|. +.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888776 4567777788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 004249 243 IESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEI 322 (765)
Q Consensus 243 ~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 322 (765)
+++|+..+++++...|.+.. ++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDAR--GYSNRAAALAKLMSFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888888888888887654 6778888888888888888888888777 45555666666666666666666666
Q ss_pred HHHhhccc
Q 004249 323 LLTAIHWE 330 (765)
Q Consensus 323 ~~~~~~~~ 330 (765)
.+++++..
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665543
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=7.7e-24 Score=224.72 Aligned_cols=381 Identities=13% Similarity=0.042 Sum_probs=261.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT---TWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
..+|..+...|++++|+..|+++.+. .++.+++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 45788899999999999999998765 5677888899999988888 8999999999865 77889999997766
Q ss_pred hC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Q 004249 206 LG-----NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS---VDILEDYLKGHPTEADFGVIDLLASMLVQMN 277 (765)
Q Consensus 206 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 277 (765)
.+ ++++|+.+|+++++. .++.+++.+|.+|...+...++ ...+.++... .++. +++.+|.+|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~--a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPE--AGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTT--HHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHH--HHHHHHHHHHcCC
Confidence 65 788999999999884 4455888999999887765544 4444444432 2344 6779999999998
Q ss_pred cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC---ChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc----c
Q 004249 278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLG---NTDKAEILLTAIHWENVSDHAESINEIADLFKNR----E 350 (765)
Q Consensus 278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g 350 (765)
.++++........+.....+ ..+++.+|.++...| ++++|+..|+++.... +.....++.+|.+|... +
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred CcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 66666665444444322222 338889999999999 8999999999987766 66677778899988665 7
Q ss_pred cHHHHHHHHHHHHhccCCCCCHHHHHHHHHH-H--HHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----CH
Q 004249 351 LYSTALKYYHMLEANAGVHNDGCLHLKIAEC-S--LALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDA-----KD 422 (765)
Q Consensus 351 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----~~ 422 (765)
++++|+.+|+++. |+++.+++.+|.+ + ...+++++|+.+|+++.+ +.++.+++.+|.+|. .| ++
T Consensus 232 d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCH
Confidence 8999999999876 5677889999998 4 467889999999999885 458889999999987 55 89
Q ss_pred HHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHh----cchhHHHHHhhHHHHhhhcccccccChhhHHHHH
Q 004249 423 EEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA----KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLI 498 (765)
Q Consensus 423 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~ 498 (765)
++|+.+|+++. +.. +.+.+.+|.+|.. ..++++|+..|.++.. +.++.+.
T Consensus 304 ~~A~~~~~~Aa---~g~------------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-----------~g~~~A~ 357 (452)
T 3e4b_A 304 KAAEAHFEKAV---GRE------------VAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-----------NGQNSAD 357 (452)
T ss_dssp HHHHHHHHTTT---TTC------------HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-----------TTCTTHH
T ss_pred HHHHHHHHHHh---CCC------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-----------hChHHHH
Confidence 99999999888 333 4678888888876 3478888888888764 2456677
Q ss_pred HHHHHHHHh----hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHh
Q 004249 499 IDLCKTLAS----LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKL 563 (765)
Q Consensus 499 ~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 563 (765)
+.+|.+|.. .+++.+|..+|+++.... +.........+. .....++..+|....++....
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g----~~~a~~~l~~l~-~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD----TPEANDLATQLE-APLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC----CHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHh
Confidence 888888875 457888888888888765 222222222222 233344555555555555443
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=8.4e-24 Score=223.17 Aligned_cols=301 Identities=17% Similarity=0.126 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACY------KQKDS 159 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~ 159 (765)
....++..|..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+.++++++.. .|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344556666677777777777777777777666653 45666666777777777777776666554 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCC--------------------HHHHH
Q 004249 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND------FKLKFHLASLYVELGN--------------------FQRAA 213 (765)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~ 213 (765)
.++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 455566666666666666666666666553321 2345555555555555 55555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 214 DVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELV 289 (765)
Q Consensus 214 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 289 (765)
..+.+++.. .+.... ..++..+|.++...|++++|+..++++
T Consensus 168 ~~~~~al~~----------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 168 DFYEENLSL----------------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHH----------------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555444433 111111 123445566666666666666666665
Q ss_pred HHHhcCCC--CccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC-----CCChHHHHHHHHHHHHccccHHHHHHHHHHH
Q 004249 290 DLVYYSGK--ELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN-----VSDHAESINEIADLFKNRELYSTALKYYHML 362 (765)
Q Consensus 290 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 362 (765)
+...+... .....++..+|.++...|++++|+..+++++... .+....++..+|.++...|++++|+.+|+++
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 55533211 1122345566666666666666666666654322 1122567888999999999999999999998
Q ss_pred HhccCCCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHcCCHHH
Q 004249 363 EANAGVHN----DGCLHLKIAECSLALKEREKSIIYFYKALQILED------NIDARLTLASLLLEDAKDEE 424 (765)
Q Consensus 363 ~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~ 424 (765)
+....... ...++..+|.++...|++++|+.+|++++++.+. ...++..++.++...|+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 87621111 2668899999999999999999999999988433 35778889999999987754
No 41
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=7.4e-24 Score=223.62 Aligned_cols=267 Identities=13% Similarity=0.046 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRL------EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD------ 158 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------ 158 (765)
...+...|.+++..|++++|+..+++++.. .|....++..+|.++...|++++|+.++.+++...|..
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 345678899999999999999999999887 34456789999999999999999999999999876542
Q ss_pred HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhCCHHHH
Q 004249 159 SSLWKLIFPWLIEQGD--------------------TTWAMSCLSEAVKA------DPNDFKLKFHLASLYVELGNFQRA 212 (765)
Q Consensus 159 ~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A 212 (765)
..++..+|.++...|+ +++|+..+++++.. .|....++..+|.++...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 4588899999999999 99999999998876 223345677788888888888888
Q ss_pred HHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHH
Q 004249 213 ADVYRQMVQLCPENI------EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 213 ~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A 282 (765)
+..+++++...|... .++..+|.++...|++++|+..+++++...|.... ..++..+|.++...|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 888888777654432 25666666666666666666666666666665543 22444555555555555555
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHH
Q 004249 283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHML 362 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 362 (765)
+..+++++...+.. ...+....++..+|.++...|++++|+.+++++
T Consensus 287 ~~~~~~a~~~~~~~---------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 287 IDYHLKHLAIAQEL---------------------------------NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHT---------------------------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---------------------------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555542110 011223567788888888889999999999888
Q ss_pred HhccC----CCCCHHHHHHHHHHHHHhccHHH
Q 004249 363 EANAG----VHNDGCLHLKIAECSLALKEREK 390 (765)
Q Consensus 363 ~~~~~----~~~~~~~~~~la~~~~~~g~~~~ 390 (765)
+.+.. .+....++..+|.++...|+...
T Consensus 334 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 334 LEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 77621 12235678888999988887643
No 42
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=2.6e-20 Score=208.00 Aligned_cols=433 Identities=11% Similarity=0.054 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHH
Q 004249 227 IEALKMGAKLYQKSGQIESSVDILEDYLKGHPT----EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLA 302 (765)
Q Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 302 (765)
++-....+..|...|.+.+|++.+++++ ..|. +.. .-..++.+..+. +.....++..+.-.. .
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~--LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d----- 1051 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRN--LQNLLILTAIKA-DRTRVMEYINRLDNY----D----- 1051 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHH--HHHHHHHHHHHh-ChhhHHHHHHHhhhc----c-----
Confidence 4445566788889999999999999998 4444 222 222344434333 333333333333211 0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 004249 303 LKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECS 382 (765)
Q Consensus 303 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~ 382 (765)
.-.+|.++...|.+++|..+|+++. ....+ +..++...|++++|+++++++ +.+.+|+.+|.++
T Consensus 1052 -~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A---~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1052 -APDIANIAISNELFEEAFAIFRKFD-----VNTSA---VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQ 1115 (1630)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHH---HHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHH
Confidence 2248889999999999999999972 11221 223344788999999998854 4689999999999
Q ss_pred HHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHH
Q 004249 383 LALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIY 462 (765)
Q Consensus 383 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (765)
...|++++|+..|.++ ++++.+..++.++.+.|++++|+++|..+.+..+.+ .+...+|.+|
T Consensus 1116 l~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-------------~Idt~LafaY 1177 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-------------YVETELIFAL 1177 (1630)
T ss_pred HhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-------------cccHHHHHHH
Confidence 9999999999999875 788999999999999999999999999988876554 3344588899
Q ss_pred HhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhh
Q 004249 463 KAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQ 542 (765)
Q Consensus 463 ~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 542 (765)
.+.+++++ ++.| + ..++. ..+..+|..+...|++++|..+|.++- .+..++.
T Consensus 1178 AKl~rlee-le~f---I----------~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~-------------ny~rLA~ 1229 (1630)
T 1xi4_A 1178 AKTNRLAE-LEEF---I----------NGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS-------------NFGRLAS 1229 (1630)
T ss_pred HhhcCHHH-HHHH---H----------hCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh-------------HHHHHHH
Confidence 99988885 4444 2 22333 456679999999999999999998752 2344445
Q ss_pred cccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHH
Q 004249 543 IPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDA 622 (765)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A 622 (765)
++.+.|++++|++.++++ .++.+|..........++. ..|...... +..+ +..+..++..|...|.|++|
T Consensus 1230 tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef-~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEA 1299 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF-RLAQMCGLH-IVVH---ADELEELINYYQDRGYFEEL 1299 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHH-HHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999998 5668888776666554443 233333322 2222 33345778889999999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccC-----CCchHHHhHHHHHHHhchH
Q 004249 623 AREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAE-----NSQEALYNIARAYHHVGLV 697 (765)
Q Consensus 623 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~lg~~~~~~g~~ 697 (765)
+..+++++.++|.+......+|+++.... ...+.+.+..+..-..+.+ +....+-.+.-+|++.|.+
T Consensus 1300 I~LlE~aL~LeraH~gmftELaiLyaKy~--------peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A 1300 ITMLEAALGLERAHMGMFTELAILYSKFK--------PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred HHHHHHHhccChhHhHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence 99999999999999888888888887543 3345677777776666655 5778899999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcC---------------CHHHHHHHHHh
Q 004249 698 SLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSG---------------AVDLARQVLRD 761 (765)
Q Consensus 698 ~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g---------------~~~~A~~~l~k 761 (765)
+.|+...-.-....=+. ..| .+. ....-.+|.+|.....|.+.+ +...+..+++|
T Consensus 1372 dnA~~tm~~h~~~a~~~---~~F----k~~--i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1372 DNAIITMMNHPTDAWKE---GQF----KDI--ITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHHHHHHHhccHhhhhh---HHH----HHH--hcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 99995443222110000 000 000 011123678888888887777 77777776664
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=1.7e-22 Score=200.59 Aligned_cols=248 Identities=12% Similarity=0.030 Sum_probs=165.3
Q ss_pred cCCHHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249 104 LGRYEEAISVLHEVIRL----EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAM 179 (765)
Q Consensus 104 ~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 179 (765)
.|++++|+..|++++.. .|.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 46677777777777775 34456677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249 180 SCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT 259 (765)
Q Consensus 180 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 259 (765)
.+|++++..+|.++.++..+|.++...|++++|+..|+++++..|++......++ ++...|++++|+..+++++...|.
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCc
Confidence 7777777777777777777777777777777777777777777777765544444 335557777777777777776666
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHH
Q 004249 260 EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESI 339 (765)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 339 (765)
+.. ...++.++...++.++|+..+++++...+.. .+.++.++
T Consensus 177 ~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~~ 218 (275)
T 1xnf_A 177 EQW---GWNIVEFYLGNISEQTLMERLKADATDNTSL-----------------------------------AEHLSETN 218 (275)
T ss_dssp CST---HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH-----------------------------------HHHHHHHH
T ss_pred chH---HHHHHHHHHHhcCHHHHHHHHHHHhcccccc-----------------------------------cccccHHH
Confidence 544 2245555566666666666666554431100 02235666
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 004249 340 NEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYF 395 (765)
Q Consensus 340 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 395 (765)
..+|.++...|++++|+.+|++++.. .|++.. ..+.++...|++++|+..+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVAN--NVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTCH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 77777777777777777777777776 565533 2356667777777777665
No 44
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=6.9e-23 Score=216.54 Aligned_cols=283 Identities=16% Similarity=0.136 Sum_probs=176.2
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCC
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACY------KQK 157 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~ 157 (765)
+.....++..|..++..|++++|+..|++++...|+++ .++..+|.++...|++++|+.+|++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34566667788888888888888888888888888776 47778888888888888888888888776 345
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhCC-----------------HHHHHH
Q 004249 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA------DPNDFKLKFHLASLYVELGN-----------------FQRAAD 214 (765)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~ 214 (765)
...++..+|.++...|++++|+.++++++.. .|....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 5567777777777777777777777777766 33444566666667666666 666666
Q ss_pred HHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004249 215 VYRQMVQLCP------ENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL 288 (765)
Q Consensus 215 ~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 288 (765)
++++++.+.+ ....++..+|.++...|++++|+.++++++...+.....
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------- 259 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR------------------------- 259 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc-------------------------
Confidence 6655554321 112234444444444444444444444444444433331
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC-----CChHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 004249 289 VDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENV-----SDHAESINEIADLFKNRELYSTALKYYHMLE 363 (765)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 363 (765)
.....++..+|.++...|++++|+..+++++...+ .....++..+|.++...|++++|+.++++++
T Consensus 260 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 260 ---------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp ---------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 01112334444444444444444444444432210 1224566777777777777777777777776
Q ss_pred hccCC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 364 ANAGV----HNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 364 ~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
..... +....++..+|.++...|++++|..+|++++++.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 65211 112457777888888888888888888888877654
No 45
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=1.9e-22 Score=213.17 Aligned_cols=237 Identities=14% Similarity=0.050 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRL------EEELPNSYHILGLVHDALGNTAKAMGCYWLAACY------KQKDS 159 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~ 159 (765)
..+...|.+++..|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++.. .|...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 45678899999999999999999999988 5667789999999999999999999999999987 45566
Q ss_pred HHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004249 160 SLWKLIFPWLIEQGD-----------------TTWAMSCLSEAVKAD------PNDFKLKFHLASLYVELGNFQRAADVY 216 (765)
Q Consensus 160 ~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (765)
.++..+|.++...|+ +++|+.++++++.+. +....++..+|.++...|++++|+.++
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 789999999999999 999999999998763 233568999999999999999999999
Q ss_pred HHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHH
Q 004249 217 RQMVQLCPENI------EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHI 286 (765)
Q Consensus 217 ~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~ 286 (765)
+++++..|... .++..+|.++...|++++|+..+++++...+.... ..++..+|.++...|++++|+.++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999876543 37888889999999999999999998888887754 345667888888888888888888
Q ss_pred HHHHHHhcCC--CCccHHHHHHHHHHHHhcCChhHHHHHHHhhc
Q 004249 287 ELVDLVYYSG--KELLLALKIKAGICHIQLGNTDKAEILLTAIH 328 (765)
Q Consensus 287 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 328 (765)
++++...+.. ......++..+|.++...|++++|..++++++
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8887763211 11112233344444444444444444444443
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.89 E-value=3e-22 Score=205.12 Aligned_cols=283 Identities=16% Similarity=0.124 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCC
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACY------KQKD 158 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~ 158 (765)
.....++..|..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+.++++++.. .|..
T Consensus 3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 3456677888999999999999999999999988874 67888899999999999999999888776 3344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCC--------------------HHHH
Q 004249 159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND------FKLKFHLASLYVELGN--------------------FQRA 212 (765)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A 212 (765)
..++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 5677888888888888888888888888764432 3477888888888888 8888
Q ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHH
Q 004249 213 ADVYRQMVQLC------PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 213 ~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A 282 (765)
+..+++++... +....++..+|.++...|++++|+..++++++..+.... ..++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88887776652 222446667777777777777777777777765444322 22455666677777777777
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHH
Q 004249 283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHML 362 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 362 (765)
+..+++++...+.... .+....++..+|.++...|++++|+.+++++
T Consensus 243 ~~~~~~al~~~~~~~~---------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKD---------------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc---------------------------------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7777666655221100 0112445556666666666666666666666
Q ss_pred HhccCC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 363 EANAGV----HNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 363 ~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
+..... +....++..+|.++...|++++|..++++++++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 554111 111346667777777777777777777777766554
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=3e-22 Score=194.59 Aligned_cols=217 Identities=12% Similarity=0.070 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW 168 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 168 (765)
.....++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34556678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD 248 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 248 (765)
+...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004249 249 ILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICH 311 (765)
Q Consensus 249 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 311 (765)
.+++++...|.+.. ++..+|.++...|++++|+..+++++.. .|....++..++.+.
T Consensus 181 ~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 181 QFAAVTEQDPGHAD--AFYNAGVTYAYKENREKALEMLDKAIDI----QPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHCTTCHH--HHHHHHHHHHHTTCTTHHHHHHHHHHHH----CTTCHHHHHHHTC--
T ss_pred HHHHHHHhCcccHH--HHHHHHHHHHHccCHHHHHHHHHHHHcc----CcchHHHHHHHHHHH
Confidence 99999999888755 7889999999999999999999999988 666666666655543
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=1.4e-21 Score=193.97 Aligned_cols=248 Identities=13% Similarity=0.003 Sum_probs=188.1
Q ss_pred HHHHcCCHHHHHHHHHHHhccC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q 004249 134 VHDALGNTAKAMGCYWLAACYK----QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNF 209 (765)
Q Consensus 134 ~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 209 (765)
.....|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3445678888888888888873 445678888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289 (765)
Q Consensus 210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 289 (765)
++|+..|+++++..|.++.++..+|.++...|++++|+..++++++..|++.. .. ....+....|++++|+..++++
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~-~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF--RS-LWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HH-HHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH--HH-HHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888887754 22 2333445667778888877777
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC
Q 004249 290 DLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVH 369 (765)
Q Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 369 (765)
+... +.... . ..++.++...++.++|+..+++++.. .|
T Consensus 171 ~~~~----~~~~~-----------------------------------~-~~~~~~~~~~~~~~~a~~~~~~~~~~--~~ 208 (275)
T 1xnf_A 171 FEKS----DKEQW-----------------------------------G-WNIVEFYLGNISEQTLMERLKADATD--NT 208 (275)
T ss_dssp HHHS----CCCST-----------------------------------H-HHHHHHHTTSSCHHHHHHHHHHHCCS--HH
T ss_pred HhcC----CcchH-----------------------------------H-HHHHHHHHHhcCHHHHHHHHHHHhcc--cc
Confidence 7662 21111 1 12444445555556666666666554 33
Q ss_pred ----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 004249 370 ----NDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLL 429 (765)
Q Consensus 370 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (765)
.++.++..+|.++...|++++|+..|++++..+|.+... .+.++...|++++|++.+
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 346889999999999999999999999999999977543 477888999999999887
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.89 E-value=5.8e-22 Score=203.03 Aligned_cols=275 Identities=14% Similarity=0.084 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHH
Q 004249 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDS----SLWKLIFPWLIEQGDTTWAMSCLSEAVKA------DPNDFKLK 196 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~ 196 (765)
.++..|.++...|++++|+..|++++...|.++ .++..+|.++...|++++|+.++++++.. .|....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 445556666666666666666666666665553 44555666666666666666666665544 22223445
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHH
Q 004249 197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASM 272 (765)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~ 272 (765)
..+|.++...|++++|+..+++++...| .... ..++..+|.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------------~~~~~~~~~~~~~~l~~~ 132 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISR----------------------------------ELNDKVGEARALYNLGNV 132 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------------HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHH----------------------------------HhcCchHHHHHHHHHHHH
Confidence 5555555555555555555555554433 2211 1234445555
Q ss_pred HHHhcc--------------------HHHHHHHHHHHHHHhc--CCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc
Q 004249 273 LVQMNA--------------------YDRVLKHIELVDLVYY--SGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE 330 (765)
Q Consensus 273 ~~~~~~--------------------~~~A~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 330 (765)
+...|+ +++|+..+++++.... .+.+....++..+|.++...|++++|+..+++++..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 555555 5555555555544322 112223345555666666666666666666655432
Q ss_pred C-----CCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249 331 N-----VSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND------GCLHLKIAECSLALKEREKSIIYFYKAL 399 (765)
Q Consensus 331 ~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al 399 (765)
. .+....++..+|.++...|++++|+.++++++.. .+.. ..++..+|.++...|++++|+.++++++
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL--ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1 1222447888999999999999999999998876 3332 6788999999999999999999999999
Q ss_pred HHcCCC------HHHHHHHHHHHHHcCCHHHHHHhcCCCCCccc
Q 004249 400 QILEDN------IDARLTLASLLLEDAKDEEAISLLTPPMSLEN 437 (765)
Q Consensus 400 ~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (765)
...+.. ..++..++.++...|++++|..+++++++..+
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 886543 45788899999999999999999988876544
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=2.8e-21 Score=178.59 Aligned_cols=168 Identities=14% Similarity=0.198 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ 172 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 172 (765)
.++..|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI 86 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc
Confidence 44566777778888888888888888888888888888888888888888888888888777777777777788888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED 252 (765)
Q Consensus 173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (765)
++++.|...+.+++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+|...|++++|+..|++
T Consensus 87 ~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888888778877778888888888888888888888888888888877788888888888888888888888
Q ss_pred HHhcCCCC
Q 004249 253 YLKGHPTE 260 (765)
Q Consensus 253 ~~~~~p~~ 260 (765)
+++.+|++
T Consensus 167 al~~~p~~ 174 (184)
T 3vtx_A 167 ALEKEEKK 174 (184)
T ss_dssp HHHTTHHH
T ss_pred HHhCCccC
Confidence 87777754
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=1.4e-21 Score=189.97 Aligned_cols=215 Identities=15% Similarity=0.080 Sum_probs=160.3
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (765)
+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK 284 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~ 284 (765)
..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+.. ++..+|.++...|++++|+.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE--ARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH--HHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999988888889999999999999999999999888887655 67788888888888888888
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHH
Q 004249 285 HIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLF 346 (765)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~ 346 (765)
.+++++.. .+....++..+|.++...|++++|+..+++++... |+++.++..++.+.
T Consensus 181 ~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 181 QFAAVTEQ----DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHH----CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHTC--
T ss_pred HHHHHHHh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHHHHH
Confidence 88888877 45556666666666666666666666666666555 55555555555443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=1.1e-20 Score=184.71 Aligned_cols=207 Identities=14% Similarity=0.050 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
...++..|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249 171 EQGDTTWAMSCLSEAVK--ADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD 248 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 248 (765)
..|++++|+.++++++. ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999 7888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHH
Q 004249 249 ILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL 303 (765)
Q Consensus 249 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 303 (765)
.++++++..|.+.. .+..++.++...|++++|...+++++.. .|.....
T Consensus 197 ~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~ 245 (252)
T 2ho1_A 197 YYDLFAQGGGQNAR--SLLLGIRLAKVFEDRDTAASYGLQLKRL----YPGSLEY 245 (252)
T ss_dssp HHHHHHTTSCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTSHHH
T ss_pred HHHHHHHhCcCcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHH----CCCCHHH
Confidence 99999999997765 6789999999999999999999999998 4444443
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.88 E-value=3.4e-20 Score=183.53 Aligned_cols=229 Identities=14% Similarity=0.100 Sum_probs=131.7
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHH
Q 004249 122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE----QGDTTWAMSCLSEAVKADPNDFKLKF 197 (765)
Q Consensus 122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 197 (765)
|.++.+++.+|.++...|++++|+.+|+++++ |.++.++..+|.++.. .+++++|+.+|+++++.+ ++.++.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 45555666666666666666666666666655 4555556666666666 666666666666665543 455555
Q ss_pred HHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 004249 198 HLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK----SGQIESSVDILEDYLKGHPTEADFGVIDLL 269 (765)
Q Consensus 198 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 269 (765)
.+|.++.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++..+ ..++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND----GDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC----HHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc----HHHHHHH
Confidence 66666655 55666666666555554 245555555555555 5555555555555555431 1234455
Q ss_pred HHHHHH----hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHH
Q 004249 270 ASMLVQ----MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADL 345 (765)
Q Consensus 270 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~ 345 (765)
|.++.. .+++++|+.+|+++++. .++.++..+|.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~-----------------------------------------~~~~a~~~lg~~ 191 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL-----------------------------------------KDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-----------------------------------------TCHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-----------------------------------------CCHHHHHHHHHH
Confidence 555544 44555555544444433 224556666666
Q ss_pred HHc----cccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHcCCC
Q 004249 346 FKN----RELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLA----LKEREKSIIYFYKALQILEDN 405 (765)
Q Consensus 346 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 405 (765)
+.. .+++++|+.+|+++++. .| +.++..+|.+|.. .+++++|+.+|+++++..|.+
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~--~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACEL--EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhC--CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 666 66666666666666655 33 5666667777766 667777777777777666543
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=4.7e-21 Score=177.11 Aligned_cols=168 Identities=14% Similarity=0.091 Sum_probs=161.6
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249 123 ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL 202 (765)
Q Consensus 123 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (765)
+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249 203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A 282 (765)
+...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++. ++..+|.++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR--AYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh--HHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 788999999999999999
Q ss_pred HHHHHHHHHH
Q 004249 283 LKHIELVDLV 292 (765)
Q Consensus 283 ~~~~~~~~~~ 292 (765)
+..|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999999988
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.88 E-value=3.8e-20 Score=183.12 Aligned_cols=223 Identities=13% Similarity=0.065 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDA----LGNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
...++..|..++..|++++|+..|++++. |.++.+++.+|.++.. .|++++|+.+|+++++.+ ++.++..+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 45567788999999999999999999988 7889999999999999 999999999999999875 899999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004249 167 PWLIE----QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQ 238 (765)
Q Consensus 167 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 238 (765)
.++.. .+++++|+.+|++++.. +++.++..+|.+|.. .+++++|+.+|+++++.. ++.++..+|.+|.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 99999 99999999999999987 489999999999999 999999999999999975 6888999999999
Q ss_pred H----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004249 239 K----SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ----MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGIC 310 (765)
Q Consensus 239 ~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (765)
. .+++++|+.+|+++++..+ ..++..+|.++.. .+++++|+.+|+++++. . +..++..+|.+
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~--~~~a~~~l~~~ 227 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----E--NGGGCFNLGAM 227 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----T--CHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC----C--CHHHHHHHHHH
Confidence 9 9999999999999998743 3378899999999 99999999999999987 2 36778888888
Q ss_pred HHh----cCChhHHHHHHHhhcccC
Q 004249 311 HIQ----LGNTDKAEILLTAIHWEN 331 (765)
Q Consensus 311 ~~~----~~~~~~A~~~~~~~~~~~ 331 (765)
+.. .+++++|+.+|++++...
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888 888899999888887665
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=2.8e-20 Score=178.19 Aligned_cols=203 Identities=12% Similarity=0.064 Sum_probs=178.0
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
+.....++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 44556677888889999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249 168 WLIEQ-GDTTWAMSCLSEAVK--ADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244 (765)
Q Consensus 168 ~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 244 (765)
++... |++++|+..+++++. ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 99999 999999999999988 566668888999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 245 SSVDILEDYLKGHP-TEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 245 ~A~~~~~~~~~~~p-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
+|+..+++++...| .+.. .+..++.++...|++++|..+++.+...
T Consensus 165 ~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQAD--DLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999998888 6654 5667888888889999888888888877
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=7.9e-21 Score=198.30 Aligned_cols=313 Identities=12% Similarity=0.015 Sum_probs=242.9
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC---CchHH--HHH--HHHHHHcCCHHHHH-----------HHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEE---LPNSY--HIL--GLVHDALGNTAKAM-----------GCYW 149 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~--~~l--~~~~~~~g~~~~A~-----------~~~~ 149 (765)
+.++...+.....++..+++++|..+++++...-+. +.... +.+ .......+.++.+. ..++
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 457788899999999999999999999998775543 34333 222 22223334444444 5555
Q ss_pred HHhccCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004249 150 LAACYKQKDSS------LWKLIFPWLIEQGDTTWAMSCLSEAVKA---DPN---DFKLKFHLASLYVELGNFQRAADVYR 217 (765)
Q Consensus 150 ~a~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (765)
++-. .|.... .++.+|.++...|++++|+..|++++.. .++ ...++..+|.++...|++++|+.+++
T Consensus 89 ~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 89 EIDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4322 333322 3445999999999999999999999987 232 45789999999999999999999999
Q ss_pred HHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHH
Q 004249 218 QMVQLCPEN-------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHI 286 (765)
Q Consensus 218 ~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~ 286 (765)
+++++.+.. ..++..+|.+|...|++++|+..++++++..+.... ..++..+|.++...|++++|+.++
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999875443 457899999999999999999999999988665543 236789999999999999999999
Q ss_pred HHHHHHhcCC-C-CccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC----CCChHHHHHHHHHHHHcccc---HHHHHH
Q 004249 287 ELVDLVYYSG-K-ELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN----VSDHAESINEIADLFKNREL---YSTALK 357 (765)
Q Consensus 287 ~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~---~~~A~~ 357 (765)
++++...... . +....++..+|.++...|++++|+.++++++... .+.....+..+|.++...|+ +++|+.
T Consensus 248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~ 327 (383)
T 3ulq_A 248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD 327 (383)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999864321 3 5667889999999999999999999999987542 13333346779999999998 888888
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 358 YYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
++++. .. .|....++..+|.+|...|++++|..+|+++++....
T Consensus 328 ~~~~~-~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 328 FLESK-ML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHT-TC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHC-cC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88776 22 4556678889999999999999999999999987543
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.87 E-value=2.4e-20 Score=178.65 Aligned_cols=210 Identities=12% Similarity=0.003 Sum_probs=140.7
Q ss_pred hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA 200 (765)
Q Consensus 121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 200 (765)
.|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++...|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45556677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHh-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Q 004249 201 SLYVEL-GNFQRAADVYRQMVQ--LCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277 (765)
Q Consensus 201 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 277 (765)
.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|.+.. ++..+|.++...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP--AFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHcC
Confidence 777777 777777777777776 44555666777777777777777777777777777666544 5666777777777
Q ss_pred cHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH
Q 004249 278 AYDRVLKHIELVDLVYYSGKE-LLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE 337 (765)
Q Consensus 278 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 337 (765)
++++|+..+++++.. .| .....+..++.++...|+.++|..+++.+.... |+++.
T Consensus 162 ~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~ 217 (225)
T 2vq2_A 162 QLGDADYYFKKYQSR----VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF-PYSEE 217 (225)
T ss_dssp CHHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHH
Confidence 777777777776666 33 444444555555555555555555555554333 44343
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.2e-20 Score=189.96 Aligned_cols=222 Identities=9% Similarity=-0.022 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHH-------cCCH-------HHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHc
Q 004249 108 EEAISVLHEVIRLEEELPNSYHILGLVHDA-------LGNT-------AKAMGCYWLAAC-YKQKDSSLWKLIFPWLIEQ 172 (765)
Q Consensus 108 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~ 172 (765)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999998874 5886 899999999998 6899999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 004249 173 GDTTWAMSCLSEAVKADPNDFK-LKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK-SGQIESSVDIL 250 (765)
Q Consensus 173 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 250 (765)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|+..|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999888876 889999999999999999999999999888888777766666443 68999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc
Q 004249 251 EDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE 330 (765)
Q Consensus 251 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 330 (765)
+++++.+|+++. +|..++.++...|++++|+..|++++....-+......++..++......|+++.|..++++++..
T Consensus 193 ~~al~~~p~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 193 ELGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHTTCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999988888755 778888888888999999999998887511011135667777777777888888888888887765
Q ss_pred C
Q 004249 331 N 331 (765)
Q Consensus 331 ~ 331 (765)
.
T Consensus 271 ~ 271 (308)
T 2ond_A 271 F 271 (308)
T ss_dssp T
T ss_pred c
Confidence 5
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=2.3e-21 Score=207.00 Aligned_cols=211 Identities=12% Similarity=0.040 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCH-HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 107 YEEAISVLHEVIRLEEELPNSYHILGLVHDALGNT-AKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEA 185 (765)
Q Consensus 107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 185 (765)
+++++..+.++....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.+|..+|.++...|++++|+.+|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444444455555555555555555 55555555555555555555555555555555555555555555
Q ss_pred HhcCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHH
Q 004249 186 VKADPNDFKLKFHLASLYVEL---------GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS--------GQIESSVD 248 (765)
Q Consensus 186 l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~ 248 (765)
++.+|+ ..++..+|.++... |++++|+..|+++++.+|+++.++..+|.+|... |++++|+.
T Consensus 164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 555544 44455555555554 5555555555555555555555555555555544 44555555
Q ss_pred HHHHHHhcCC---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249 249 ILEDYLKGHP---TEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL 324 (765)
Q Consensus 249 ~~~~~~~~~p---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 324 (765)
.|+++++.+| .++. ++..+|.++...|++++|+..|++++.. .|....++..++.++...|++++|+..+
T Consensus 243 ~~~~al~~~p~~~~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPD--LHLNRATLHKYEESYGEALEGFSQAAAL----DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHCGGGGGCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcccCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555444 3332 3444555555555555555555555444 3344444444444444444444444433
No 61
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=1.5e-20 Score=183.76 Aligned_cols=201 Identities=13% Similarity=0.047 Sum_probs=145.4
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (765)
+.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 56777778888888888888888888887777777777778888888888888888888887777777777777777777
Q ss_pred HhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249 205 ELGNFQRAADVYRQMVQ--LCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A 282 (765)
..|++++|+.++++++. ..|.+..++..+|.++...|++++|+..+++++...|.+.. ++..+|.++...|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS--VALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHcCCHHHH
Confidence 77777777777777777 66667777777777777777777777777777777776544 566777777777777777
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249 283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN 331 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 331 (765)
+..+++++.. .+.....+..++.++...|++++|...+++++...
T Consensus 195 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQG----GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTT----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh----CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777776665 44445555555555555555555555555554443
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=2e-20 Score=188.34 Aligned_cols=252 Identities=13% Similarity=0.053 Sum_probs=193.2
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHh
Q 004249 142 AKAMGCYWLAACYKQKDSSLWKLIFPWLIE-------QGDT-------TWAMSCLSEAVK-ADPNDFKLKFHLASLYVEL 206 (765)
Q Consensus 142 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 206 (765)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 688899999999999999999999988764 5776 889999999998 6899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hccHHHHHH
Q 004249 207 GNFQRAADVYRQMVQLCPENIE-ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ-MNAYDRVLK 284 (765)
Q Consensus 207 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~~~~~A~~ 284 (765)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.... ++...+.+... .|++++|+.
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH--VYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH--HHHHHHHHHHHTSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999998876 8899999999999999999999999998887644 54444444332 688888888
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC--CC-ChHHHHHHHHHHHHccccHHHHHHHHHH
Q 004249 285 HIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN--VS-DHAESINEIADLFKNRELYSTALKYYHM 361 (765)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 361 (765)
.|+++++. .|....++..++.++...|++++|+.+|++++... +| ....+|..++..+...|++++|..++++
T Consensus 191 ~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 191 IFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHH----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888 45567777788888888888888888888877642 23 3566777777777778888888888888
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004249 362 LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA 413 (765)
Q Consensus 362 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 413 (765)
++.. .|+++.... ++.+ ..-.+++.++|.++++...||
T Consensus 267 a~~~--~p~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 267 RFTA--FREEYEGKE-TALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHHH--TTTTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred HHHH--cccccccch-HHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 8777 665432221 1111 111145556777777666554
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.86 E-value=4e-18 Score=186.00 Aligned_cols=437 Identities=8% Similarity=-0.024 Sum_probs=280.7
Q ss_pred CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 004249 106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD---TTWAMSCL 182 (765)
Q Consensus 106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 182 (765)
...+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|.....|...+......|+ ++.+..+|
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 345567788999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhcCC--CCHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHh----CCCCHHHHHHHHHHHH---------H
Q 004249 183 SEAVKADP--NDFKLKFHLASLYVELGNF--------QRAADVYRQMVQL----CPENIEALKMGAKLYQ---------K 239 (765)
Q Consensus 183 ~~al~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~la~~~~---------~ 239 (765)
++++...| .+++.|..........++. +.....|++++.. ++....+|........ .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99999984 6888888877766666553 3344788888764 5656677766665443 3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-------------HhccHHHHHHHHHHHHHHhcC---CC------
Q 004249 240 SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLV-------------QMNAYDRVLKHIELVDLVYYS---GK------ 297 (765)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~-------------~~~~~~~A~~~~~~~~~~~~~---~~------ 297 (765)
.++.+.+..+|++++.. |......+|......-. ...+|+.|...+......... ..
T Consensus 207 q~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 45678899999999964 54432223322211111 122344444444443222110 00
Q ss_pred ------C-------ccHHHHHHHHHHHHhcC-------ChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHH-
Q 004249 298 ------E-------LLLALKIKAGICHIQLG-------NTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTAL- 356 (765)
Q Consensus 298 ------~-------~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~- 356 (765)
| .....|..........+ ..+.....|++++... |..+.+|+..+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 0 00122222222211111 0123345666666655 666777777777777777777775
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc-----------CC-----------CHHHHHHHHH
Q 004249 357 KYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL-----------ED-----------NIDARLTLAS 414 (765)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~l~~ 414 (765)
.+|++++.. .|.+..+|..++.+....|+++.|...|++++... |. ...+|...+.
T Consensus 365 ~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 365 KYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 777777766 67777777777777777777777777777777642 32 2345666666
Q ss_pred HHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcch-hHHHHHhhHHHHhhhcccccccChhh
Q 004249 415 LLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM-IEGFVDMLLPLVCESSHQEETFNHEE 493 (765)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~l~~~~~~~~ 493 (765)
+..+.|..+.|..+|.++++..|.. ...++...+.+....+. ++.|..+|..+++ ..|+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~-----------~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk---------~~p~ 502 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLV-----------TPDIYLENAYIEYHISKDTKTACKVLELGLK---------YFAT 502 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGS-----------CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH---------HHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCC-----------ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---------HCCC
Confidence 6666777777777777766541111 02444555555555443 6777777777765 3455
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCch
Q 004249 494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRL 568 (765)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 568 (765)
++..+..++......|+.+.|..+|++++...+. +.....++..........|+.+.+...+.++.+.+|+++
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~--~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISD--SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS--TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 5666666666666677777777777777766521 123444444444455566777777777777777777664
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.85 E-value=2.3e-19 Score=172.16 Aligned_cols=206 Identities=12% Similarity=0.133 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEE-ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
..++..|..++..|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|++++..+|++..++..+|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 5677888999999999999999999999998 888899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDF-------KLKFHLASLYVELGNFQRAADVYRQMVQLCPE--NIEALKMGAKLYQKSG 241 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 241 (765)
..|++++|+..+++++..+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.+|...|
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 66899999999999999999999999999999 8899999999987655
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004249 242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGIC 310 (765)
Q Consensus 242 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (765)
...++++....+.... ...+......+.+++|+.+++++++. .|....+...++.+
T Consensus 168 -----~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~A~~~~~~a~~l----~p~~~~~~~~l~~i 223 (228)
T 4i17_A 168 -----ADVLRKATPLASSNKE----KYASEKAKADAAFKKAVDYLGEAVTL----SPNRTEIKQMQDQV 223 (228)
T ss_dssp -----HHHHHHHGGGTTTCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred -----HHHHHHHHhcccCCHH----HHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCHHHHHHHHHH
Confidence 3456666666655422 24455566678888999999999888 66666666655554
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=3e-20 Score=198.44 Aligned_cols=219 Identities=16% Similarity=0.053 Sum_probs=173.3
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004249 139 GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT-TWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217 (765)
Q Consensus 139 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (765)
+.+++++..+.......|.+..+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3466777777777777788888888888888888888 888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh--------ccHH
Q 004249 218 QMVQLCPENIEALKMGAKLYQKS---------GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM--------NAYD 280 (765)
Q Consensus 218 ~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~--------~~~~ 280 (765)
++++.+|+ ..++..+|.++... |++++|+..|+++++.+|++.. +|..+|.++... |+++
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR--SWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHhhccccchHH
Confidence 88888887 67788888888888 8888888888888888777655 677777777777 7777
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHH
Q 004249 281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH 360 (765)
Q Consensus 281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 360 (765)
+|+..|++++.. .|. .+.++.++..+|.++...|++++|+..|+
T Consensus 239 ~A~~~~~~al~~----~p~--------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 239 QALSAYAQAEKV----DRK--------------------------------ASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp HHHHHHHHHHHH----CGG--------------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCC--------------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777666 220 02567788888888888888888888888
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 361 MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKA 398 (765)
Q Consensus 361 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 398 (765)
+++.+ .|+++.++..++.++...|++++|+..+.++
T Consensus 283 ~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 283 QAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888 7888888888888888888888888877665
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=3.2e-20 Score=205.31 Aligned_cols=170 Identities=19% Similarity=0.163 Sum_probs=94.1
Q ss_pred hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA 200 (765)
Q Consensus 121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 200 (765)
.|++++++..+|.++..+|++++|+.+|+++++++|++..++..+|.++..+|++++|+..|+++++++|+++.++.++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHH
Q 004249 201 SLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD 280 (765)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 280 (765)
.++..+|++++|+..|+++++++|++..++.++|.+|...|++++|+..|+++++++|++.. ++..+|.++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD--AYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHhhhhhHHHhcccHH
Confidence 55555555555555555555555555555555555555555555555555555555555444 4455555555555555
Q ss_pred HHHHHHHHHHHH
Q 004249 281 RVLKHIELVDLV 292 (765)
Q Consensus 281 ~A~~~~~~~~~~ 292 (765)
+|++.++++++.
T Consensus 163 ~A~~~~~kal~l 174 (723)
T 4gyw_A 163 DYDERMKKLVSI 174 (723)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=5.6e-20 Score=203.33 Aligned_cols=173 Identities=18% Similarity=0.160 Sum_probs=166.5
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 87 VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
.|..+..+...|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|++..++..+|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 167 PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS 246 (765)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 246 (765)
.++..+|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 004249 247 VDILEDYLKGHPT 259 (765)
Q Consensus 247 ~~~~~~~~~~~p~ 259 (765)
++.++++++..|+
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 9999999886543
No 68
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=3.6e-20 Score=186.52 Aligned_cols=289 Identities=12% Similarity=0.109 Sum_probs=152.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMS 180 (765)
Q Consensus 101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (765)
.-..|+.++|.++++++ +.+.+|..+|.++...|++++|++.|.++ .++..+..++..+...|++++|+.
T Consensus 13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 34678899999999988 34579999999999999999999999774 466789999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249 181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE 260 (765)
Q Consensus 181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 260 (765)
+++.+.+..+ ++.+...++.+|.+.|++.++.++++. | +..++..+|..+...|+|++|+.+|.++
T Consensus 83 yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9999988544 477788999999999999999988852 4 3458999999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHH
Q 004249 261 ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESIN 340 (765)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 340 (765)
. .|..++.++.++|++++|++.++++ .....|...+.++...|+++.|..+...++ .+++-..
T Consensus 149 -~--n~~~LA~~L~~Lg~yq~AVea~~KA---------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~ 211 (449)
T 1b89_A 149 -S--NFGRLASTLVHLGEYQAAVDGARKA---------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE 211 (449)
T ss_dssp -T--CHHHHHHHHHTTTCHHHHHHHHHHH---------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHH
T ss_pred -h--hHHHHHHHHHHhccHHHHHHHHHHc---------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHH
Confidence 1 4779999999999999999999998 246778888999999999999988777643 3345556
Q ss_pred HHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHcC-----CCHHHHHHHH
Q 004249 341 EIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLA--LKEREKSIIYFYKALQILE-----DNIDARLTLA 413 (765)
Q Consensus 341 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~ 413 (765)
.++..|.+.|++++|+.+++.++.+ ++....++..+|.+|.+ .++..+.++.|...+.+.| .+...|..+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999 89999999999998876 4678888999988888878 7888999999
Q ss_pred HHHHHcCCHHHHHHhcCCC
Q 004249 414 SLLLEDAKDEEAISLLTPP 432 (765)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~ 432 (765)
.+|...++++.|...+-+.
T Consensus 290 ~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhhchHHHHHHHHHhC
Confidence 9999999999998866433
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.83 E-value=2.2e-18 Score=165.32 Aligned_cols=219 Identities=16% Similarity=0.108 Sum_probs=153.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249 156 QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA 234 (765)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 234 (765)
+.++..++.+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45667888888888888888888888888888887 77788888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 004249 235 KLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL 314 (765)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (765)
.++...|++++|+..++++++.+|+++.. +..++ .++..+|.++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~-------------------------------~~~~~~g~~~~~~ 130 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATI--EKLYA-------------------------------IYYLKEGQKFQQA 130 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHH-------------------------------HHHHHHHHHHHHT
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHH--HHHHH-------------------------------HHHHHHhHHHHHh
Confidence 88888888888888888888888876531 11111 1334445555566
Q ss_pred CChhHHHHHHHhhcccCCCC--hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHH
Q 004249 315 GNTDKAEILLTAIHWENVSD--HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSI 392 (765)
Q Consensus 315 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 392 (765)
|++++|+..|++++... |. ++.++..+|.++...|+ ..++++..+ .+..+..+ .+......+.+++|+
T Consensus 131 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~--~~~~~~~~--~~~~~~~~~~~~~A~ 200 (228)
T 4i17_A 131 GNIEKAEENYKHATDVT-SKKWKTDALYSLGVLFYNNGA-----DVLRKATPL--ASSNKEKY--ASEKAKADAAFKKAV 200 (228)
T ss_dssp TCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGG--TTTCHHHH--HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHHHHH-----HHHHHHHhc--ccCCHHHH--HHHHHHHHHHHHHHH
Confidence 66666666666665554 55 56667777777654443 344555555 44443333 344455667788888
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 004249 393 IYFYKALQILEDNIDARLTLASLLL 417 (765)
Q Consensus 393 ~~~~~al~~~p~~~~~~~~l~~~~~ 417 (765)
.+|+++++++|++..+...++.+..
T Consensus 201 ~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 201 DYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888888888888887777776643
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.83 E-value=3.9e-17 Score=178.21 Aligned_cols=458 Identities=11% Similarity=0.029 Sum_probs=306.0
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC---HHHHHHHHH
Q 004249 141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN---FQRAADVYR 217 (765)
Q Consensus 141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 217 (765)
..+-+..|++.+..+|.+...|..++......+.+..+..+|++++...|.....|...+......|+ ++.+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 45667788888888999999999988888888889999999999999999998888888888888888 899999999
Q ss_pred HHHHhCC--CCHHHHHHHHHHHHHcCCH----HH----HHHHHHHHHhcCCC-CCC-HHHHHHHHHHHH---------Hh
Q 004249 218 QMVQLCP--ENIEALKMGAKLYQKSGQI----ES----SVDILEDYLKGHPT-EAD-FGVIDLLASMLV---------QM 276 (765)
Q Consensus 218 ~al~~~p--~~~~~~~~la~~~~~~g~~----~~----A~~~~~~~~~~~p~-~~~-~~~~~~l~~~~~---------~~ 276 (765)
+++...| .++.+|..........++. ++ ....|++++..-+. ++. ..+|........ ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9988884 5677777776666665554 23 34677777765433 222 336666666644 24
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHH
Q 004249 277 NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTAL 356 (765)
Q Consensus 277 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 356 (765)
++.+.+..+|++++.. |. ......+..........+. ..+...+.. ...+|..|.
T Consensus 208 ~~~~~~R~iy~raL~i-P~--~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar 262 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQ-PM--DCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHTTS-CC--SSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-cc--HHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHH
Confidence 5667778888887754 11 1112222222111111111 011111110 112334444
Q ss_pred HHHHHHHhc----cC-CCC-------------------CHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHcCCC
Q 004249 357 KYYHMLEAN----AG-VHN-------------------DGCLHLKIAECSLALK-------EREKSIIYFYKALQILEDN 405 (765)
Q Consensus 357 ~~~~~~~~~----~~-~~~-------------------~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~ 405 (765)
..+...... .. .|. ....|..........+ ........|++++...|.+
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~ 342 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFA 342 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCC
Confidence 444332111 00 011 0134444433322211 1344567899999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHH-HhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcc
Q 004249 406 IDARLTLASLLLEDAKDEEAI-SLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSH 484 (765)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 484 (765)
++.|+..+..+...|+.++|. .+|++++...|.+ ..+++.++.+....|+++.|.++|.+++.....
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s------------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS------------AVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988897 9999988877766 467788889999999999999999888853100
Q ss_pred -ccccc-Chh-----------hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhccccc-CCh
Q 004249 485 -QEETF-NHE-----------EHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNT-TDP 550 (765)
Q Consensus 485 -l~~~~-~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 550 (765)
...+- ..| ....++..++....+.|..+.|..+|.+|++..+ .....++...+.+.+.. ++.
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~----~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK----LVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG----GSCTHHHHHHHHHHHTTTSCC
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHhCCCH
Confidence 00000 002 2455788888888889999999999999998731 21122333333244444 559
Q ss_pred hhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC---CCCchhhhhhhhhhhhhHHHHHHHHH
Q 004249 551 KLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRD---FVPPIIISGHQFTMISHHQDAAREYL 627 (765)
Q Consensus 551 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~ 627 (765)
+.|...|..+++.+|+++..|..++.+....++. +.+...+.+.+...|+ ...++......-...|+...+...+.
T Consensus 487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~-~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEE-SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999887766654 6888899999988774 22233444444456799999999999
Q ss_pred HHHhhCCCChHHH
Q 004249 628 EAYKLLPENPLIN 640 (765)
Q Consensus 628 ~a~~~~p~~~~~~ 640 (765)
++.+..|+++.+.
T Consensus 566 R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 566 RFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHSTTCCHHH
T ss_pred HHHHhCCCCcHHH
Confidence 9999999987554
No 71
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=2.6e-20 Score=187.48 Aligned_cols=385 Identities=10% Similarity=0.027 Sum_probs=192.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q 004249 133 LVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA 212 (765)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 212 (765)
......|+.++|.+++++. +.+.+|..+|.++...|++++|++.|.++ .++..+...+..+...|++++|
T Consensus 11 ~ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHH
Confidence 3445778999999999988 34569999999999999999999999764 4677899999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 213 ADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 213 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
+.+++.+.+..++ +.+...++.+|.+.|++.++.++++ .|+. . .|..+|..+...|.|++|..+|.++
T Consensus 81 i~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~-~--a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNN-A--HIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-----CC-------------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcH-H--HHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 9999999886444 6778899999999999999888774 2433 2 6889999999999999999999866
Q ss_pred hcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCH
Q 004249 293 YYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDG 372 (765)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 372 (765)
..+..++.++.++|++++|++.+.++ .++.+|..++.++...|+++.|..+...++ . ++
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~-----~a 207 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V-----HA 207 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T-----CH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h-----CH
Confidence 35679999999999999999999998 258899999999999999999977766422 2 44
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCHHHHHHhcCCCCCccccccCcccchhhhh
Q 004249 373 CLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLED--AKDEEAISLLTPPMSLENKYVNSDKTHAWWL 450 (765)
Q Consensus 373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (765)
+-...+..+|.+.|++++|+..+++++.+++.....+..++.+|.+- |+..+.++.|...++..+-- ..-.
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~-------~~~~ 280 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL-------RAAE 280 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH-------HHHH
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH-------HHHH
Confidence 44557889999999999999999999999999999999999999764 68889999999888876611 1111
Q ss_pred hhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcc---cccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC
Q 004249 451 NIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSH---QEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG 527 (765)
Q Consensus 451 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 527 (765)
+...|..+.-+|...++++.|+........+..+ ...++..+.+.++++.....|. +....++..+..++.-.
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~-- 356 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR-- 356 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc--
Confidence 2567888999999999999998755433221111 1223345566777777776665 55556666666666311
Q ss_pred CCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhh
Q 004249 528 KFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSR 580 (765)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 580 (765)
-++.... ....+.|+..-...+++.+... ++..+-..+..++..
T Consensus 357 ---ld~~r~v----~~~~~~~~l~l~~~yl~~v~~~--n~~~vnealn~l~ie 400 (449)
T 1b89_A 357 ---LDHTRAV----NYFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFIT 400 (449)
T ss_dssp ---CCHHHHH----HHHHHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHH
T ss_pred ---cCcHHHH----HHHHHcCCcHHHHHHHHHHHHh--hHHHHHHHHHHHHHh
Confidence 1111111 1223456666666666544432 333343345555543
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.83 E-value=1.3e-19 Score=188.95 Aligned_cols=306 Identities=10% Similarity=-0.005 Sum_probs=234.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCC---CCHHHH--HHH--HHHHHHcCCHHHHH-----------HHHHHHHhcCC
Q 004249 129 HILGLVHDALGNTAKAMGCYWLAACYKQ---KDSSLW--KLI--FPWLIEQGDTTWAM-----------SCLSEAVKADP 190 (765)
Q Consensus 129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~al~~~p 190 (765)
..-...+...+++++|...++.+...-+ .+.... +.+ .+.....+++..+. ..++++-. .|
T Consensus 16 l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~ 94 (383)
T 3ulq_A 16 INEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQ 94 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cC
Confidence 3334556788999999999998755321 344433 222 22233344444444 55555433 33
Q ss_pred CCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004249 191 NDFK------LKFHLASLYVELGNFQRAADVYRQMVQL---CPE---NIEALKMGAKLYQKSGQIESSVDILEDYLKGHP 258 (765)
Q Consensus 191 ~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 258 (765)
.... .++.+|.++...|++++|+..|++++.. .++ .+.++..+|.+|...|++++|+.+++++++..+
T Consensus 95 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 174 (383)
T 3ulq_A 95 ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3333 3445999999999999999999999987 233 357899999999999999999999999999866
Q ss_pred CCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc--
Q 004249 259 TEAD-----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG--KELLLALKIKAGICHIQLGNTDKAEILLTAIHW-- 329 (765)
Q Consensus 259 ~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 329 (765)
.... ..++..+|.++...|++++|+..+++++...+.. .+....++..+|.++...|++++|+.++++++.
T Consensus 175 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 6543 3467899999999999999999999999885432 223345788999999999999999999999886
Q ss_pred ---cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH
Q 004249 330 ---ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAG---VHNDGCLHLKIAECSLALKE---REKSIIYFYKALQ 400 (765)
Q Consensus 330 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~ 400 (765)
...+..+.++..+|.++...|++++|+.++++++.+.. +|.....+..+|.++...|+ +.+|+..+++. .
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~ 333 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-M 333 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-T
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-c
Confidence 33367788999999999999999999999999987731 12223345679999999999 88888888876 3
Q ss_pred HcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCcc
Q 004249 401 ILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLE 436 (765)
Q Consensus 401 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (765)
..|....++..+|.+|...|++++|..+++++++..
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 335556788899999999999999999998877643
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.82 E-value=2.2e-18 Score=179.28 Aligned_cols=312 Identities=13% Similarity=0.003 Sum_probs=233.0
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---CCchHHHHHHHHHH----HcCCHHHHH---------HHHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEE---ELPNSYHILGLVHD----ALGNTAKAM---------GCYWLA 151 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~----~~g~~~~A~---------~~~~~a 151 (765)
++++...+..=..++..+++++|..+++++....+ .+.......+...+ ..+.+..+. ..++++
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 56777888877778999999999999999876443 23344322222221 222322222 444443
Q ss_pred hccC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249 152 ACYK-QKD----SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP------NDFKLKFHLASLYVELGNFQRAADVYRQMV 220 (765)
Q Consensus 152 ~~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 220 (765)
-... +.+ ...++.+|..+...|++++|+..|++++...+ ....++..+|.++...|+++.|+..+++++
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 2221 111 12566789999999999999999999998632 235688999999999999999999999999
Q ss_pred HhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249 221 QLCPEN-------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELV 289 (765)
Q Consensus 221 ~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 289 (765)
...+.. ..++..+|.+|...|++++|+..++++++..+.... ..++..+|.++...|++++|+.+++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 875432 457889999999999999999999999986543222 346779999999999999999999999
Q ss_pred HHHhcC-CCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC----CCChHHHHHHHHHHHHcccc---HHHHHHHHHH
Q 004249 290 DLVYYS-GKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN----VSDHAESINEIADLFKNREL---YSTALKYYHM 361 (765)
Q Consensus 290 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~ 361 (765)
+..... ..+....++..+|.++...|++++|+.++++++... .+.....+..++.++...|+ +.+|+.++++
T Consensus 249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 985331 245557888999999999999999999999987542 24445566778888888888 8888888876
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc
Q 004249 362 LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL 402 (765)
Q Consensus 362 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 402 (765)
.. . .+....++..+|.+|...|++++|..+|+++++..
T Consensus 329 ~~-~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 329 KN-L--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TT-C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CC-C--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 32 2 34556778889999999999999999999998764
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=2.7e-19 Score=175.62 Aligned_cols=172 Identities=19% Similarity=0.168 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWK 163 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~ 163 (765)
....++..|..++..|++++|+..|++++...|.+ +.+++.+|.++...|++++|+..|++++...|++ +.+++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34566777788888888888888888888888877 6788888888888888888888888888877644 46777
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHhCCHHHHHHHHHH
Q 004249 164 LIFPWLIE--------QGDTTWAMSCLSEAVKADPNDFKLK-----------------FHLASLYVELGNFQRAADVYRQ 218 (765)
Q Consensus 164 ~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~ 218 (765)
.+|.++.. .|++++|+..|++++..+|+++.+. +.+|.++...|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88888888 8888888888888888888775544 4445555555555555555555
Q ss_pred HHHhCCCC---HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCC
Q 004249 219 MVQLCPEN---IEALKMGAKLYQKS----------GQIESSVDILEDYLKGHPTEA 261 (765)
Q Consensus 219 al~~~p~~---~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~p~~~ 261 (765)
+++..|++ +.+++.+|.+|... |++++|+..|+++++.+|+++
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 55555442 33455555555444 444555555555555555443
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.82 E-value=2.4e-18 Score=168.63 Aligned_cols=192 Identities=11% Similarity=0.066 Sum_probs=165.3
Q ss_pred CcHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCHHHHH
Q 004249 87 VCPEIRRMLGDASLHYALGRY-EEAISVLHEVIRLEEELPNSYHILGLVHDALG--NTAKAMGCYWLAACYKQKDSSLWK 163 (765)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~ 163 (765)
-+++....++........|.+ ++|+..+.+++.++|++..+|...+.++..+| ++++++.++..++..+|++..+|.
T Consensus 28 y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~ 107 (306)
T 3dra_A 28 YDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWN 107 (306)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHH
Confidence 367777777777777888887 58999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHH----HHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhCCCCHHHHHHHH
Q 004249 164 LIFPWL----IEQ---GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQ--RAADVYRQMVQLCPENIEALKMGA 234 (765)
Q Consensus 164 ~la~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la 234 (765)
..+.++ ... +++++++.++.+++..+|.+..+|...+.+....|.++ +++.++.++++.+|.+..+|...+
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~ 187 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999888 666 78999999999999999999999999999999999888 999999999999999999999998
Q ss_pred HHHHHcCC------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHH
Q 004249 235 KLYQKSGQ------IESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD 280 (765)
Q Consensus 235 ~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 280 (765)
.++...+. ++++++++.+++..+|.+.. +|+.++.++...|+..
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S--aW~y~~~ll~~~~~~~ 237 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS--TWNYLLGIHERFDRSI 237 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHTTCCG
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHhcCCCh
Confidence 88888776 77777777777777777665 6667777766666533
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=9.9e-19 Score=171.57 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=165.1
Q ss_pred HhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 004249 119 RLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND--- 192 (765)
Q Consensus 119 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 192 (765)
...|.++..++.+|..++..|++++|+..|++++...|.+ +.+++.+|.++...|++++|+..|++++...|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4578889999999999999999999999999999999998 8999999999999999999999999999998754
Q ss_pred HHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHH
Q 004249 193 FKLKFHLASLYVE--------LGNFQRAADVYRQMVQLCPENIEAL-----------------KMGAKLYQKSGQIESSV 247 (765)
Q Consensus 193 ~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~ 247 (765)
+.+++.+|.++.. .|++++|+..|+++++..|+++.+. +.+|.+|...|++++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 6789999999999 9999999999999999999886555 77788888888888888
Q ss_pred HHHHHHHhcCCCCCC-HHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC
Q 004249 248 DILEDYLKGHPTEAD-FGVIDLLASMLVQM----------NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGN 316 (765)
Q Consensus 248 ~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (765)
..|+++++..|++.. ..++..+|.++... |++++|+..|++++..+| +.+....+...++.++...++
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHHHH
Confidence 888888888887654 34677888888876 888888888888888832 233334455555666555555
Q ss_pred hhH
Q 004249 317 TDK 319 (765)
Q Consensus 317 ~~~ 319 (765)
++.
T Consensus 248 ~~~ 250 (261)
T 3qky_A 248 LEG 250 (261)
T ss_dssp HHT
T ss_pred hhh
Confidence 443
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=1.5e-17 Score=172.80 Aligned_cols=273 Identities=14% Similarity=0.016 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--H----HH
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPN-----SYHILGLVHDALGNTAKAMGCYWLAACYKQKD--S----SL 161 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~--~----~~ 161 (765)
..+..|..++..|++++|+..+++++...|.... ++..+|.++...|++++|+..+++++...|.. . .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3456678888889999999999888887775532 56778888888888888888888888765432 1 33
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HH
Q 004249 162 WKLIFPWLIEQGDTTWAMSCLSEAVKAD--------PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-----IE 228 (765)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~ 228 (765)
+..+|.++...|++++|+..+++++... |....++..+|.++...|++++|...+++++...+.. ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5667888888888888888888887753 2234556677888888888888888888887776642 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHH----HHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHH
Q 004249 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVI----DLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL 303 (765)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 303 (765)
++..+|.++...|++++|...+++++...+.... .... ...+.++...|++++|...+++++...+.........
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5667777777777777777777777665332111 1011 1233446667777777777766654421111111223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhhcccCC-----CChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249 304 KIKAGICHIQLGNTDKAEILLTAIHWENV-----SDHAESINEIADLFKNRELYSTALKYYHMLEAN 365 (765)
Q Consensus 304 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 365 (765)
+..++.++...|++++|...+++++.... .....++..+|.++...|++++|...+++++..
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45566666666666666666666543210 011235555666666666666666666666654
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=182.16 Aligned_cols=256 Identities=15% Similarity=0.091 Sum_probs=164.9
Q ss_pred hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 004249 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACY--------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA---- 188 (765)
Q Consensus 121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 188 (765)
+|....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.++++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3444577888888888888888888888888774 4555677777888888888888888888888776
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249 189 ----DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC--------PENIEALKMGAKLYQKSGQIESSVDILEDYLKG 256 (765)
Q Consensus 189 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 256 (765)
.|....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.++++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 24445677788888888888888888888887763 444566777777888888888888888777776
Q ss_pred --------CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhc
Q 004249 257 --------HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIH 328 (765)
Q Consensus 257 --------~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 328 (765)
.|.. ..++..+|.++...|++++|+..+++++...+.. . .+......
T Consensus 183 ~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~------------~~~~~~~~------- 237 (311)
T 3nf1_A 183 YQTKLGPDDPNV--AKTKNNLASCYLKQGKFKQAETLYKEILTRAHER----E------------FGSVDDEN------- 237 (311)
T ss_dssp HHHTSCTTCHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----H------------HC-------------
T ss_pred HHHHhCCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----c------------CCCCCcch-------
Confidence 2222 2356677777777777777777777777762210 0 00000000
Q ss_pred ccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 329 WENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 329 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
.........+...+..+...+.+.+|...+..+... .|..+.++..+|.++...|++++|+.+|++++++.|.
T Consensus 238 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 -KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 000001223333444455566667777777777766 7778888888999999999999999999999888765
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=9.2e-20 Score=184.31 Aligned_cols=255 Identities=13% Similarity=0.109 Sum_probs=193.5
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc--
Q 004249 85 KKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRL--------EEELPNSYHILGLVHDALGNTAKAMGCYWLAACY-- 154 (765)
Q Consensus 85 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-- 154 (765)
...+.....+...|..++..|++++|+..|++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344566777888999999999999999999999985 5566789999999999999999999999999987
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249 155 ------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD--------PNDFKLKFHLASLYVELGNFQRAADVYRQMV 220 (765)
Q Consensus 155 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 220 (765)
.|....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556888999999999999999999999999873 4556789999999999999999999999999
Q ss_pred Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 221 QL--------CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 221 ~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
.. .|....++..+|.++...|++++|+..+++++...|... .+.........
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~------------- 240 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE-------FGSVDDENKPI------------- 240 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-------HC------CCH-------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------CCCCCcchHHH-------------
Confidence 98 666678899999999999999999999999998765410 00000000000
Q ss_pred hcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249 293 YYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN 365 (765)
Q Consensus 293 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 365 (765)
......+...+..+...+.+.++...+..+.... +..+.++..+|.++...|++++|+.+|++++.+
T Consensus 241 -----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 241 -----WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -----HHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0011112223333455667777777777776544 677888999999999999999999999999877
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.80 E-value=3.7e-17 Score=169.84 Aligned_cols=305 Identities=12% Similarity=0.043 Sum_probs=234.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--H----H
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-----SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND--F----K 194 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~----~ 194 (765)
.++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|.. + .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 5677889999999999999999999998876543 257789999999999999999999999875432 2 3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---H
Q 004249 195 LKFHLASLYVELGNFQRAADVYRQMVQLC--------PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD---F 263 (765)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~ 263 (765)
++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|...+++++...+.... .
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 47889999999999999999999999865 334567788999999999999999999999998775432 3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc-cHHHH--HHHHHHHHhcCChhHHHHHHHhhcccCCCC---hHH
Q 004249 264 GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKEL-LLALK--IKAGICHIQLGNTDKAEILLTAIHWENVSD---HAE 337 (765)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ 337 (765)
..+..+|.++...|++++|...+++++......... ..... ...+.++...|++++|...+.+++...+.. ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 367789999999999999999999999874432111 11111 134455789999999999999987644211 134
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004249 338 SINEIADLFKNRELYSTALKYYHMLEANAGVH----NDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA 413 (765)
Q Consensus 338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 413 (765)
.+..++.++...|++++|...+++++...... ....++..+|.++...|++++|...+++++...+.. ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-----g~~ 329 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-----GFI 329 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----CCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-----cHH
Confidence 67789999999999999999999988762111 123578889999999999999999999999875431 122
Q ss_pred HHHHHcCCHHHHHHhcCCCCCccc
Q 004249 414 SLLLEDAKDEEAISLLTPPMSLEN 437 (765)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~~ 437 (765)
..+...| +....+++......|
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHcc--HHHHHHHHHHHhCCC
Confidence 2333333 444555555444444
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.79 E-value=4.8e-18 Score=156.95 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
...++..|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44455666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDIL 250 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (765)
..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCCCC
Q 004249 251 EDYLKGHPTEA 261 (765)
Q Consensus 251 ~~~~~~~p~~~ 261 (765)
+++++..|++.
T Consensus 168 ~~~~~~~~~~~ 178 (186)
T 3as5_A 168 KKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHcCCCch
Confidence 77777666654
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=2.5e-18 Score=161.71 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHH----------------HHHHHHHcCCHHHHHHHHHHHhcc
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHI----------------LGLVHDALGNTAKAMGCYWLAACY 154 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~a~~~ 154 (765)
+..++.+|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHH
Q 004249 155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN--FQRAADVYRQMVQLCPENIEALKM 232 (765)
Q Consensus 155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~ 232 (765)
+|+++.++..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|+ ...+...+.+++...| ...+++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 999999999999999999999999999999999999999999999999987664 4566777777764332 2346778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249 233 GAKLYQKSGQIESSVDILEDYLKGHPTE 260 (765)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~~~~~~p~~ 260 (765)
+|.++...|++++|+..|+++++.+|+.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 8999999999999999999999999974
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.79 E-value=1.7e-19 Score=159.41 Aligned_cols=145 Identities=13% Similarity=0.118 Sum_probs=97.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 004249 98 ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW 177 (765)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 177 (765)
|.++...|++++|+..+++++..+|.++.+++.+|.+|+..|++++|+.+|+++++++|+++.+|..+|.++...|++++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 34455566667777777777666666666666777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249 178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV-YRQMVQLCPENIEALKMGAKLYQKSGQ 242 (765)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 242 (765)
|+.+|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777777777777777777777777766655544 466777777777666666666666554
No 84
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.78 E-value=1e-16 Score=157.12 Aligned_cols=233 Identities=9% Similarity=0.003 Sum_probs=194.2
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHh---CCHH
Q 004249 140 NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG--DTTWAMSCLSEAVKADPNDFKLKFHLASLY----VEL---GNFQ 210 (765)
Q Consensus 140 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~ 210 (765)
..++|+..+.+++.++|++..+|...+.++...| ++++++.++..++..+|++..+|...+.++ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3468999999999999999999999999999999 999999999999999999999999999999 666 7899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc------HHHH
Q 004249 211 RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE--SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA------YDRV 282 (765)
Q Consensus 211 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~------~~~A 282 (765)
+++.++.++++.+|.+..+|...+.++...|.++ +++.++.++++.+|.+.. +|+..+.++...+. ++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s--AW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS--AWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhccccchhhhHHHH
Confidence 9999999999999999999999999999999999 999999999999999876 89999999998887 8999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhH-HHHHHHhhcccC--CCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249 283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDK-AEILLTAIHWEN--VSDHAESINEIADLFKNRELYSTALKYY 359 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 359 (765)
++++.+++.. +|.+..+|..++.++...|.... ...+..+++... .+.++.++..++.++.+.|+.++|+++|
T Consensus 206 l~~~~~aI~~----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 206 LNYVKDKIVK----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHh----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999998 78888888888888888877554 344555554321 2445566666666666666666666666
Q ss_pred HHHHh-ccCCCCCHHHHHHHHH
Q 004249 360 HMLEA-NAGVHNDGCLHLKIAE 380 (765)
Q Consensus 360 ~~~~~-~~~~~~~~~~~~~la~ 380 (765)
+.+.. . +|.....|...+.
T Consensus 282 ~~l~~~~--Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKY--NPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTT--CGGGHHHHHHHHH
T ss_pred HHHHhcc--ChHHHHHHHHHHh
Confidence 66664 4 5666666655443
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=3.1e-19 Score=157.72 Aligned_cols=147 Identities=18% Similarity=0.140 Sum_probs=133.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q 004249 130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNF 209 (765)
Q Consensus 130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 209 (765)
.||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 47888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCCCHHHHHHHHHHHHHhcc
Q 004249 210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI-LEDYLKGHPTEADFGVIDLLASMLVQMNA 278 (765)
Q Consensus 210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 278 (765)
++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++. ++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~--~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA--VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH--HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH--HHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999887765 5999999999876 67788888877764
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.78 E-value=1.3e-18 Score=194.33 Aligned_cols=186 Identities=17% Similarity=-0.011 Sum_probs=132.6
Q ss_pred HHcCCHHHHHHHHHHHH--------HhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249 102 YALGRYEEAISVLHEVI--------RLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173 (765)
Q Consensus 102 ~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 173 (765)
+..|++++|+..+++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|++..+|+.+|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 56777777777777777 6777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY 253 (765)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 253 (765)
++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|++..+++.+|.++...|++++|+..|+++
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777 77777777777777777777777777777777777777777
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhccHHHH-HHHHHHHH
Q 004249 254 LKGHPTEADFGVIDLLASMLVQMNAYDRV-LKHIELVD 290 (765)
Q Consensus 254 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~ 290 (765)
++.+|++.. ++..+|.++...++.+++ ...++++.
T Consensus 561 l~l~P~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 561 PPTSRHFTT--ARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp CTTSTTHHH--HHHHHHHHTC-------CCHHHHHHHH
T ss_pred cccCcccHH--HHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 777777655 566777777665543333 33333333
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=7.6e-17 Score=167.58 Aligned_cols=238 Identities=11% Similarity=-0.029 Sum_probs=151.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC---ccHH
Q 004249 230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE---LLLA 302 (765)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~ 302 (765)
++.+|..+...|++++|+..|++++...+.... ..++..+|.++...|++++|+..+++++..++.... ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 445555555666666666666665554322211 234555666666666666666666666655443211 2234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhhccc-----CCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc---CCCCCHHH
Q 004249 303 LKIKAGICHIQLGNTDKAEILLTAIHWE-----NVSDHAESINEIADLFKNRELYSTALKYYHMLEANA---GVHNDGCL 374 (765)
Q Consensus 303 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 374 (765)
++..+|.++...|++++|+..+++++.. ..+....++..+|.++...|++++|+.+|++++.+. ..|..+.+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4556666666666666666666665432 112234577778888888888888888888887720 15666778
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCC---HHHHHHhcCCCCCccccccCcccch
Q 004249 375 HLKIAECSLALKEREKSIIYFYKALQILE-----DNIDARLTLASLLLEDAK---DEEAISLLTPPMSLENKYVNSDKTH 446 (765)
Q Consensus 375 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ 446 (765)
+..+|.++...|++++|+.+++++++..+ ........++.++...|+ +.+|+.++++.... +.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~-~~-------- 334 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH-AY-------- 334 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH-HH--------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh-hH--------
Confidence 88888888888888888888888888743 233445557777777777 77888877763321 11
Q ss_pred hhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHh
Q 004249 447 AWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVC 480 (765)
Q Consensus 447 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 480 (765)
...++..+|.+|...|++++|+..+.+++.
T Consensus 335 ----~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 335 ----IEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 135667888888888888888888887764
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.77 E-value=1.7e-17 Score=165.21 Aligned_cols=249 Identities=11% Similarity=0.003 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 109 EAISVLHEVIRLEEELPNSYHILGLVHDAL---GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEA 185 (765)
Q Consensus 109 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 185 (765)
+|.+++.++-+.-+.....+ .++.. +++++|+..|.++ |.++...|++++|+.+|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 45566666666655433222 11222 1477777777776 45677778888888888888
Q ss_pred HhcCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 004249 186 VKADPN------DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKS-GQIESSVDILED 252 (765)
Q Consensus 186 l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~ 252 (765)
+.+.+. ...++..+|.+|...|++++|+.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 776321 14567788888888888888888888888776543 35677888888885 888888888888
Q ss_pred HHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHhcCChhHHHHHHH
Q 004249 253 YLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKEL---LLALKIKAGICHIQLGNTDKAEILLT 325 (765)
Q Consensus 253 ~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 325 (765)
+++..|.... ..++..+|.++..+|++++|+..|++++...+..... ....+..+|.++...|++++|+..|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8887765432 2356677888888888888888888888773322111 12256677777777777777777777
Q ss_pred hhcccCCCChHH-----HHHHHHHHHH--ccccHHHHHHHHHHHHhccCCCCCHHHHHHHH
Q 004249 326 AIHWENVSDHAE-----SINEIADLFK--NRELYSTALKYYHMLEANAGVHNDGCLHLKIA 379 (765)
Q Consensus 326 ~~~~~~~~~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la 379 (765)
+++... |.... .+..++..+. ..+++++|+..|++++.+ +|....++..+-
T Consensus 224 ~al~l~-p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l--~~~~~~~~~~~k 281 (292)
T 1qqe_A 224 EGQSED-PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL--DKWKITILNKIK 281 (292)
T ss_dssp GGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC--CHHHHHHHHHHH
T ss_pred HHHhhC-CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc--HHHHHHHHHHHH
Confidence 776554 33222 2334444443 456677777777766666 555544444333
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=2.6e-17 Score=157.04 Aligned_cols=184 Identities=14% Similarity=0.033 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH---HHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS---LWKLI 165 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~~l 165 (765)
..++..|..++..|+|++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 4567888999999999999999999999999875 68999999999999999999999999999998864 78889
Q ss_pred HHHHHH------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249 166 FPWLIE------------------QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI 227 (765)
Q Consensus 166 a~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 227 (765)
|.++.. .|++++|+..|+++++..|+++.+...+..+....+. ..
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-----------------~~ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-----------------LA 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-----------------HH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----------------HH
Confidence 998876 4567777777777777777665443211110000000 00
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 228 EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
.....+|.+|...|++++|+..|+++++..|+++. ..++..+|.++..+|++++|+..++++...
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 11234556666666666666666666666665432 124556666666666666666666655554
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.77 E-value=1.2e-17 Score=166.35 Aligned_cols=224 Identities=12% Similarity=0.058 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 004249 106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK------DSSLWKLIFPWLIEQGDTTWAM 179 (765)
Q Consensus 106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g~~~~A~ 179 (765)
++++|+..|.++ |.++...|++++|+.+|.+++.+.+. ...++..+|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 477777777765 55677778888888888887776421 1456777888888888888888
Q ss_pred HHHHHHHhcCCCC------HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHH
Q 004249 180 SCLSEAVKADPND------FKLKFHLASLYVEL-GNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKSGQIESS 246 (765)
Q Consensus 180 ~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A 246 (765)
.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++++++.|.. ..++..+|.++...|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 8888888775532 35677888888885 88888888888888877644 45677888888888888888
Q ss_pred HHHHHHHHhcCCCCCCH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHH--hcCChh
Q 004249 247 VDILEDYLKGHPTEADF-----GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE-LLLALKIKAGICHI--QLGNTD 318 (765)
Q Consensus 247 ~~~~~~~~~~~p~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~--~~~~~~ 318 (765)
+..|++++...|++... ..+..+|.++...|++++|+..|++++.+.+.... ........++..+. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888887776542 14567888888888888888888888776322111 01112333444443 456788
Q ss_pred HHHHHHHhhcccCCCChHHHHHHHHH
Q 004249 319 KAEILLTAIHWENVSDHAESINEIAD 344 (765)
Q Consensus 319 ~A~~~~~~~~~~~~~~~~~~~~~la~ 344 (765)
+|+..|++++..+ |....++..+-.
T Consensus 258 ~A~~~~~~~~~l~-~~~~~~~~~~k~ 282 (292)
T 1qqe_A 258 EHCKEFDNFMRLD-KWKITILNKIKE 282 (292)
T ss_dssp HHHHHHTTSSCCC-HHHHHHHHHHHH
T ss_pred HHHHHhccCCccH-HHHHHHHHHHHH
Confidence 8888888876554 444444444433
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.77 E-value=4.6e-17 Score=150.24 Aligned_cols=168 Identities=16% Similarity=0.153 Sum_probs=160.4
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (765)
...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK 284 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~ 284 (765)
..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+.. ++..+|.++...|++++|+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK--VHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH--HHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998755 78899999999999999999
Q ss_pred HHHHHHHHhc
Q 004249 285 HIELVDLVYY 294 (765)
Q Consensus 285 ~~~~~~~~~~ 294 (765)
.+++++...+
T Consensus 166 ~~~~~~~~~~ 175 (186)
T 3as5_A 166 HFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHcCC
Confidence 9999998844
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.76 E-value=4.9e-17 Score=181.50 Aligned_cols=188 Identities=12% Similarity=0.024 Sum_probs=147.5
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249 153 CYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAV--------KADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP 224 (765)
Q Consensus 153 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 224 (765)
..+|+++.+++..+ ...|++++|+..+++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 44677776666655 67788888888888888 77788888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHH
Q 004249 225 ENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK 304 (765)
Q Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 304 (765)
++..+++.+|.++...|++++|+..|+++++.+|++.. ++..+|.++...|++++ +..|+++++. +|....++
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~lg~~~~~~g~~~~-~~~~~~al~~----~P~~~~a~ 537 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA--PKLALAATAELAGNTDE-HKFYQTVWST----NDGVISAA 537 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH--HHHHHHHHHHHHTCCCT-TCHHHHHHHH----CTTCHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHcCChHH-HHHHHHHHHh----CCchHHHH
Confidence 88888888888888888888888888888888888766 67788888888888888 8888888888 67777788
Q ss_pred HHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcccc
Q 004249 305 IKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNREL 351 (765)
Q Consensus 305 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 351 (765)
+.+|.++...|++++|+..|++++... |.+..++..+|.++...++
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 888888888888888888888887666 7778888888888766444
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.76 E-value=9.1e-18 Score=157.83 Aligned_cols=166 Identities=11% Similarity=0.043 Sum_probs=127.5
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 004249 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL----------------IFPWLIEQGDTTWAMSCLSEAVK 187 (765)
Q Consensus 124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 187 (765)
+++.++..|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999988888 88888888888888888888888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCCHHH
Q 004249 188 ADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ--IESSVDILEDYLKGHPTEADFGV 265 (765)
Q Consensus 188 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~ 265 (765)
.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+|...|+ ...+...+.+++...|. ...
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a 159 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM---QYA 159 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH---HHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch---hHH
Confidence 8888888888888888888888888888888888888888888888888766554 34455666665432221 124
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 266 IDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 266 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
++.+|.++...|++++|+..|+++++.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 566777777778888888888888777
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.75 E-value=1.9e-17 Score=151.19 Aligned_cols=162 Identities=17% Similarity=0.113 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-H
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI-E 171 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~-~ 171 (765)
..+..|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 3456666666677777777777777666777667777777777777777777777776666666 5555444443322 2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN--IEALKMGAKLYQKSGQIESSVDI 249 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~ 249 (765)
.+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..++.++...|+.++|+..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2233345666666666666666666666666666666666666666666666654 34666666666666666666666
Q ss_pred HHHHHh
Q 004249 250 LEDYLK 255 (765)
Q Consensus 250 ~~~~~~ 255 (765)
|++++.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.74 E-value=2.4e-17 Score=150.53 Aligned_cols=171 Identities=15% Similarity=0.033 Sum_probs=152.1
Q ss_pred hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA 200 (765)
Q Consensus 121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 200 (765)
+|...+.++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4556678899999999999999999999999999999999999999999999999999999999999999 887776666
Q ss_pred HHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccH
Q 004249 201 SLYV-ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY 279 (765)
Q Consensus 201 ~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 279 (765)
.+.. ..+....|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.....++..++.++...|+.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 5533 333445689999999999999999999999999999999999999999999999875545788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 004249 280 DRVLKHIELVDLV 292 (765)
Q Consensus 280 ~~A~~~~~~~~~~ 292 (765)
++|+..|++++..
T Consensus 161 ~~A~~~y~~al~~ 173 (176)
T 2r5s_A 161 NAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9999999998865
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.74 E-value=1.6e-15 Score=149.07 Aligned_cols=195 Identities=8% Similarity=0.044 Sum_probs=166.6
Q ss_pred HHHHHHHHcCCHH-HHHHHHHHHHHhhCCCchHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCHHHHHH
Q 004249 96 GDASLHYALGRYE-EAISVLHEVIRLEEELPNSYHILGLVHDALGN----------TAKAMGCYWLAACYKQKDSSLWKL 164 (765)
Q Consensus 96 ~~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~~ 164 (765)
.........|.++ +|+..+.+++..+|++..+|...+.++...|. +++++.++..++..+|.+..+|..
T Consensus 34 ~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~h 113 (331)
T 3dss_A 34 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 113 (331)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3344455677777 79999999999999999999999999988776 689999999999999999999999
Q ss_pred HHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Q 004249 165 IFPWLIEQGD--TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN-FQRAADVYRQMVQLCPENIEALKMGAKLYQKS- 240 (765)
Q Consensus 165 la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 240 (765)
.+.++...|+ +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|..++.++...
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence 9999999984 8999999999999999999999999999999998 69999999999999999999999999998887
Q ss_pred -------------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHH
Q 004249 241 -------------GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM-----------NAYDRVLKHIELVDLV 292 (765)
Q Consensus 241 -------------g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~ 292 (765)
+.++++++++.+++..+|++.. +|+.+..++... +.++++++.++++++.
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S--aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS--AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999998877 666555555444 4566666666666666
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.73 E-value=1.7e-17 Score=164.89 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=160.3
Q ss_pred HHcCCHHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------CCCHHHHHHH
Q 004249 102 YALGRYEEAISVLHEVIRLE--------EELPNSYHILGLVHDALGNTAKAMGCYWLAACYK--------QKDSSLWKLI 165 (765)
Q Consensus 102 ~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~l 165 (765)
...|++++|+..|++++... |..+.++..+|.++...|++++|+.+|++++... |....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 35677778888888777642 4556788999999999999999999999998763 4556788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHH
Q 004249 166 FPWLIEQGDTTWAMSCLSEAVKA--------DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL--------CPENIEA 229 (765)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 229 (765)
|.++...|++++|+.++++++.. +|....++..+|.++...|++++|+.++++++.. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999887 3556678888999999999999999999998887 5666778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCcc
Q 004249 230 LKMGAKLYQKSGQIESSVDILEDYLKGH---------PTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELL 300 (765)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~---------p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 300 (765)
+..+|.++...|++++|+.++++++... +.... .+..++..+...+....+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----------------- 232 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKP--IWMHAEEREESKDKRRDSA----------------- 232 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCC--HHHHHHHHHHTTCCCCC-------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHH--HHHHHHHHHhcCCchhHHH-----------------
Confidence 8888888888888888888888888752 22222 3334444433332222111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249 301 LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN 365 (765)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 365 (765)
.+..+...+..+.... +....++..+|.++...|++++|+.+|+++++.
T Consensus 233 ---------------~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 233 ---------------PYGEYGSWYKACKVDS-PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -------------------------CCCCCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1223333333333222 556667777777777777777777777777654
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.73 E-value=3.1e-17 Score=139.61 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=66.8
Q ss_pred hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249 120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL 199 (765)
Q Consensus 120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 199 (765)
++|+.+.++..+|..++..|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+++.+++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249 200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL 236 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 236 (765)
|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 5555555555555555555555555555555555443
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.72 E-value=4.9e-17 Score=161.56 Aligned_cols=233 Identities=14% Similarity=0.047 Sum_probs=171.9
Q ss_pred HHcCCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Q 004249 136 DALGNTAKAMGCYWLAACY--------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA--------DPNDFKLKFHL 199 (765)
Q Consensus 136 ~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 199 (765)
...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++.. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467778888888877763 2556788999999999999999999999999977 35556789999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCCCH
Q 004249 200 ASLYVELGNFQRAADVYRQMVQL--------CPENIEALKMGAKLYQKSGQIESSVDILEDYLKG--------HPTEADF 263 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~ 263 (765)
|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.++++++.. .|.. .
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~ 169 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV--A 169 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH--H
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH--H
Confidence 99999999999999999999987 4666788999999999999999999999999987 3322 3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHH
Q 004249 264 GVIDLLASMLVQMNAYDRVLKHIELVDLVYYS-----GKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAES 338 (765)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 338 (765)
.++..+|.++...|++++|+..+++++...+. ..+.....+..++......+...
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 229 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR-------------------- 229 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC--------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh--------------------
Confidence 36789999999999999999999999887321 11222222333333222221111
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 339 INEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQI 401 (765)
Q Consensus 339 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 401 (765)
....+..+...++..... .|..+.++..+|.++...|++++|+.+|+++++.
T Consensus 230 ---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 230 ---------DSAPYGEYGSWYKACKVD--SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ---------C------------CCCCC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122344455555444434 5777889999999999999999999999999875
No 100
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.72 E-value=1.4e-15 Score=149.99 Aligned_cols=194 Identities=12% Similarity=0.095 Sum_probs=174.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHH
Q 004249 84 KKKVCPEIRRMLGDASLHYALGRY-EEAISVLHEVIRLEEELPNSYHILGLVHDALG-NTAKAMGCYWLAACYKQKDSSL 161 (765)
Q Consensus 84 ~~~~~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~ 161 (765)
....+++....+..-...+..+.+ ++|+.++.+++..+|++..+|...+.++...| .+++++.++..++..+|++..+
T Consensus 46 ~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a 125 (349)
T 3q7a_A 46 PIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV 125 (349)
T ss_dssp CBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred eeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Confidence 445567777777665556665555 68999999999999999999999999999999 5999999999999999999999
Q ss_pred HHHHHHHHHHc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHhCCCCHHHHH
Q 004249 162 WKLIFPWLIEQ-G-DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQ--------RAADVYRQMVQLCPENIEALK 231 (765)
Q Consensus 162 ~~~la~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~ 231 (765)
|...+.++... + ++++++.++.+++..+|.+..+|...+.+....|.++ ++++++.++++.+|.+..+|.
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~ 205 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG 205 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999988 8 8999999999999999999999999999999988887 999999999999999999999
Q ss_pred HHHHHHHHcCC-------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccH
Q 004249 232 MGAKLYQKSGQ-------IESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY 279 (765)
Q Consensus 232 ~la~~~~~~g~-------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 279 (765)
..+.++...+. ++++++++.+++..+|++.. +|+.+..++...|+.
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S--aW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS--AWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCC
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhcCCC
Confidence 99999999887 78999999999999999877 787877777776653
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.72 E-value=2.1e-16 Score=150.70 Aligned_cols=191 Identities=11% Similarity=0.015 Sum_probs=143.7
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 004249 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFK---LKF 197 (765)
Q Consensus 124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 197 (765)
++..++.+|..++..|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 457788999999999999999999999999888764 78899999999999999999999999999998764 788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH-------------
Q 004249 198 HLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFG------------- 264 (765)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~------------- 264 (765)
.+|.++...|.. ....+..++..+...|++++|+..|+++++.+|++....
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 889888775421 111123344444455556666666666666666555421
Q ss_pred --HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249 265 --VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN 331 (765)
Q Consensus 265 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 331 (765)
....+|.++...|++++|+..|+++++.+|. .+....++..+|.++..+|++++|+..++.+....
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1257899999999999999999999999432 33345789999999999999999999999887655
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.71 E-value=2.7e-16 Score=155.88 Aligned_cols=171 Identities=13% Similarity=0.012 Sum_probs=117.6
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249 122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201 (765)
Q Consensus 122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 201 (765)
|.+...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 55666666777777777777777777777777777777777777777777777777777777777766655555555555
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHH
Q 004249 202 LYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDR 281 (765)
Q Consensus 202 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~ 281 (765)
.+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++....++..++.++...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 56666666667777777777777777777777777777777777777777777777766433356677777777777777
Q ss_pred HHHHHHHHHHH
Q 004249 282 VLKHIELVDLV 292 (765)
Q Consensus 282 A~~~~~~~~~~ 292 (765)
|+..|++++..
T Consensus 274 a~~~~r~al~~ 284 (287)
T 3qou_A 274 LASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.70 E-value=3.4e-16 Score=155.16 Aligned_cols=167 Identities=15% Similarity=0.059 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW 168 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 168 (765)
.....++..|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34456678899999999999999999999999999999999999999999999999999999999999777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHH
Q 004249 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN--IEALKMGAKLYQKSGQIESS 246 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A 246 (765)
+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++|
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 8899999999999999999999999999999999999999999999999999999998 88999999999999999999
Q ss_pred HHHHHHHHh
Q 004249 247 VDILEDYLK 255 (765)
Q Consensus 247 ~~~~~~~~~ 255 (765)
+..|++++.
T Consensus 275 ~~~~r~al~ 283 (287)
T 3qou_A 275 ASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.70 E-value=1.6e-16 Score=135.21 Aligned_cols=121 Identities=22% Similarity=0.148 Sum_probs=110.2
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249 150 LAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229 (765)
Q Consensus 150 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 229 (765)
++..++|+...++..+|..++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 004249 230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASM 272 (765)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 272 (765)
++.+|.++..+|++++|+..|+++++++|++.. ++..++.+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~--a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEE--AREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH--HHHHHHHh
Confidence 999999999999999999999999999999876 56666654
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.69 E-value=7.1e-16 Score=169.60 Aligned_cols=165 Identities=13% Similarity=0.057 Sum_probs=141.1
Q ss_pred cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLS 183 (765)
Q Consensus 104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 183 (765)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCC
Q 004249 184 EAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS---GQIESSVDILEDYLKGHPTE 260 (765)
Q Consensus 184 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~ 260 (765)
++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++... |++++|+..++++++.+|.+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred CCHHHHHHHH
Q 004249 261 ADFGVIDLLA 270 (765)
Q Consensus 261 ~~~~~~~~l~ 270 (765)
.. .+..++
T Consensus 162 ~~--~~~~l~ 169 (568)
T 2vsy_A 162 VE--PFAFLS 169 (568)
T ss_dssp SC--HHHHTT
T ss_pred cC--hHHHhC
Confidence 87 444554
No 106
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.68 E-value=3e-14 Score=140.11 Aligned_cols=247 Identities=11% Similarity=0.055 Sum_probs=199.5
Q ss_pred HcCCHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 137 ALGNTA-KAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD----------TTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 137 ~~g~~~-~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
..|.++ +|+..+.+++.++|++..+|...+.++...+. +++++.++..++..+|.+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 456665 79999999999999999999999999888776 6899999999999999999999999999999
Q ss_pred hC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh------
Q 004249 206 LG--NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ-IESSVDILEDYLKGHPTEADFGVIDLLASMLVQM------ 276 (765)
Q Consensus 206 ~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~------ 276 (765)
.| .+++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+.. +|+.++.++...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S--AW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHHSCCC--
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHhhhcccc
Confidence 99 49999999999999999999999999999999999 59999999999999999877 888999988877
Q ss_pred --------ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc-CChhHHHHHHHhhcccCCCChHHHHHHHHHHHH
Q 004249 277 --------NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL-GNTDKAEILLTAIHWENVSDHAESINEIADLFK 347 (765)
Q Consensus 277 --------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 347 (765)
+.++++++++.+++.. .|.+..+|+.+..++... |. .. .. -.
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~----~P~d~SaW~Y~r~ll~~~~~~-------------~~-~~-----------~~ 249 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGAGSGR-------------CE-LS-----------VE 249 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHSSSCG-------------GG-CC-----------HH
T ss_pred ccccccchHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhccCc-------------cc-cc-----------hH
Confidence 5678888888888888 677777775444333322 20 00 00 01
Q ss_pred ccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004249 348 NRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSL---ALKEREKSIIYFYKALQILEDNIDARLTLASLL 416 (765)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 416 (765)
..+.++++++.++++++. .|++.-.+..++.+.. ..|..++...++.+++++||....-|..+...+
T Consensus 250 ~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 250 KSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 135678999999999998 8888555444443332 246688999999999999998877666665544
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=7.5e-17 Score=141.13 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=70.1
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249 113 VLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND 192 (765)
Q Consensus 113 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 192 (765)
.+++++..+|+++.+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++...|++++|+.+|++++.++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 34455555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249 193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 193 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 226 (765)
+.+++.+|.++...|++++|+..|++++++.|+.
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 6666666666666666666666666666666554
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.67 E-value=1.4e-16 Score=139.35 Aligned_cols=118 Identities=13% Similarity=-0.004 Sum_probs=107.6
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 004249 144 AMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC 223 (765)
Q Consensus 144 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 223 (765)
+-..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33556778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249 224 PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA 261 (765)
Q Consensus 224 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 261 (765)
|+++.+++.+|.+|...|++++|+..|+++++..|+..
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999988753
No 109
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.67 E-value=1.5e-14 Score=142.65 Aligned_cols=179 Identities=9% Similarity=0.015 Sum_probs=161.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-C-CH
Q 004249 133 LVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG-DTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL-G-NF 209 (765)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~ 209 (765)
.+....+..++|+..+.+++.++|++..+|...+.++...| .+++++.++++++..+|++..+|...+.++... + ++
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 33344456678999999999999999999999999999999 599999999999999999999999999999998 8 89
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc---
Q 004249 210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE--------SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA--- 278 (765)
Q Consensus 210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~--- 278 (765)
++++.++.++++.+|.+..+|...+.+....|.++ +++++++++++.+|.+.. +|+..+.++...+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S--AW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS--AWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999998888 999999999999999876 89999999988886
Q ss_pred ----HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCh
Q 004249 279 ----YDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNT 317 (765)
Q Consensus 279 ----~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (765)
++++++++.+++.. .|.+..++..+..++...|..
T Consensus 220 ~~~~~~eELe~~~~aI~~----~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL----IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999 788888888877777766654
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.65 E-value=5.6e-16 Score=147.61 Aligned_cols=212 Identities=9% Similarity=-0.030 Sum_probs=172.7
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHH-------HHHHHHcCCHHHHHHHHHHHhccCCCCH-
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHIL-------GLVHDALGNTAKAMGCYWLAACYKQKDS- 159 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~a~~~~p~~~- 159 (765)
.+....+|..|.-+ ..+++..|...|.+++..+|..+++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 4 ~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~ 82 (282)
T 4f3v_A 4 TDRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN 82 (282)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC
T ss_pred hHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 34567778888776 68999999999999999999999999999 8999999999999999999998766533
Q ss_pred --------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004249 160 --------------------SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQM 219 (765)
Q Consensus 160 --------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 219 (765)
.+...++.++...|++++|...|..++...|.+. +.+.+|.++.+.+++++|+..|+.+
T Consensus 83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 3445588889999999999999999988888888 8899999999999999999999877
Q ss_pred HHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Q 004249 220 VQLCPEN--IEALKMGAKLYQKSGQIESSVDILEDYLKGH--PTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYS 295 (765)
Q Consensus 220 l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 295 (765)
....+.. ..+++.+|.++..+|++++|+..|++++... |.. ...+++.+|.++..+|+.++|...|++++..
T Consensus 162 ~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~--- 237 (282)
T 4f3v_A 162 GKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTT--- 237 (282)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred hccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 6643221 3578899999999999999999999988543 221 2236778999999999999999999999988
Q ss_pred CCCccHHHHHHH
Q 004249 296 GKELLLALKIKA 307 (765)
Q Consensus 296 ~~~~~~~~~~~l 307 (765)
.|. ..+...+
T Consensus 238 -~P~-~~~~~aL 247 (282)
T 4f3v_A 238 -HPE-PKVAAAL 247 (282)
T ss_dssp -SCC-HHHHHHH
T ss_pred -CCc-HHHHHHH
Confidence 555 4444433
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=2.6e-14 Score=134.43 Aligned_cols=175 Identities=14% Similarity=0.041 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 004249 108 EEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG----DTTWAMSCLS 183 (765)
Q Consensus 108 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 183 (765)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3577888888765 78999999999999999999999999999875 688999999999988 7 8999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004249 184 EAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPE--NIEALKMGAKLYQK----SGQIESSVDILEDY 253 (765)
Q Consensus 184 ~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 253 (765)
++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..|. ++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9965 6789999999999987 88999999999999988873 48899999999999 88999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHh-c-----cHHHHHHHHHHHHHH
Q 004249 254 LKGHPTEADFGVIDLLASMLVQM-N-----AYDRVLKHIELVDLV 292 (765)
Q Consensus 254 ~~~~p~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~ 292 (765)
++. |.++. +++.+|.+|... | ++++|+.+|+++.+.
T Consensus 156 ~~~-~~~~~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 156 SSL-SRTGY--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHT-SCTTH--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHc-CCCHH--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 988 55554 678999998765 3 899999999999887
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.62 E-value=2.8e-15 Score=131.67 Aligned_cols=117 Identities=10% Similarity=-0.012 Sum_probs=80.6
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 004249 146 GCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE 225 (765)
Q Consensus 146 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 225 (765)
..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34566666666666666667777777777777777777777667766767777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 226 NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
++.+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 6666777777777777777777777777766666554
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.62 E-value=7.5e-16 Score=135.34 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=108.5
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004249 111 ISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP 190 (765)
Q Consensus 111 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 190 (765)
-..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34577888888988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 004249 191 NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEAL 230 (765)
Q Consensus 191 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 230 (765)
+++.+++.+|.++...|++++|+..|++++++.|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999988876543
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.62 E-value=8.6e-15 Score=146.83 Aligned_cols=227 Identities=12% Similarity=0.092 Sum_probs=159.7
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249 103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDA-LGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSC 181 (765)
Q Consensus 103 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 181 (765)
..|++++|..+++++.+..+.. ++. .+++++|...|.++ |.++...|++++|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4678889999999888877642 111 47788888887765 5567778888888888
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 004249 182 LSEAVKADPND------FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKSGQIESSVDI 249 (765)
Q Consensus 182 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 249 (765)
|.+++.+.+.. ..++..+|.+|...|++++|+.+|++++.+.+.. ..++..+|.+|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 88888764321 3567788888888888888888888887764322 3567788888877 888888888
Q ss_pred HHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHhcCChhHHHHH
Q 004249 250 LEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE--LLLALKIKAGICHIQLGNTDKAEIL 323 (765)
Q Consensus 250 ~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~ 323 (765)
|++++...|.... ..++..+|.++..+|++++|+.+|++++...+.... .....+..++.++...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888877665432 336778888888888888888888888887543222 1234677778888888888888888
Q ss_pred HHhhcccCCCCh-----HHHHHHHHHHHHccccHHHHHH
Q 004249 324 LTAIHWENVSDH-----AESINEIADLFKNRELYSTALK 357 (765)
Q Consensus 324 ~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~ 357 (765)
|++++ .. |.. ......++..+ ..|+.+.+..
T Consensus 218 ~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88887 54 322 22344455544 4566554444
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.62 E-value=4.7e-15 Score=141.28 Aligned_cols=211 Identities=7% Similarity=-0.057 Sum_probs=171.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCCCCH------
Q 004249 197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG-------AKLYQKSGQIESSVDILEDYLKGHPTEADF------ 263 (765)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------ 263 (765)
+..|..+ ..+++..|...|.+++..+|+.+++|..+ +.++...++..+++..+.+.+.+.|.....
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3444444 57888888888888888888888888888 788888888888888888888877654331
Q ss_pred -------------HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc
Q 004249 264 -------------GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE 330 (765)
Q Consensus 264 -------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 330 (765)
.+...++.++...|++++|.+.|..++.. .|... ..+.+|.++...+++++|+..|+.+...
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 13345888999999999999999888765 56666 8899999999999999999999987643
Q ss_pred CCCCh-HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHH
Q 004249 331 NVSDH-AESINEIADLFKNRELYSTALKYYHMLEANAGVHN-DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDA 408 (765)
Q Consensus 331 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (765)
..+.. ..+++.+|.++...|++++|+.+|++++.....|. .+.+++.+|.++..+|+.++|...|++++..+|+ ..+
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 21221 45899999999999999999999999986531265 6679999999999999999999999999999999 777
Q ss_pred HHHHHH
Q 004249 409 RLTLAS 414 (765)
Q Consensus 409 ~~~l~~ 414 (765)
+..|..
T Consensus 244 ~~aL~~ 249 (282)
T 4f3v_A 244 AAALKD 249 (282)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 666643
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.62 E-value=6.7e-15 Score=161.79 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=131.1
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004249 138 LGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217 (765)
Q Consensus 138 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 217 (765)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHH
Q 004249 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM---NAYDRVLKHIELVDLV 292 (765)
Q Consensus 218 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~ 292 (765)
++++.+|++..++..+|.++...|++++|+..|+++++.+|++.. ++..++.++... |++++|+..+++++..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY--ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998866 788999999999 9999999999999999
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.62 E-value=8.6e-15 Score=146.83 Aligned_cols=228 Identities=12% Similarity=0.093 Sum_probs=132.4
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004249 138 LGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE-QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY 216 (765)
Q Consensus 138 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 216 (765)
.|++++|..+++++.+..+.. ++. .+++++|+.+|.++ |.+|...|++++|+..|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 355666666666665544421 122 35566666665554 44555666666666666
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHH
Q 004249 217 RQMVQLCPEN------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHI 286 (765)
Q Consensus 217 ~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~ 286 (765)
.+++.+.+.. ..++..+|.+|...|++++|+.+|++++.+.+.... ..++..+|.+|.. |++++|+.+|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 6666554321 234555555555555555555555555554333221 1234444555544 5555555555
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Q 004249 287 ELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA 366 (765)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 366 (765)
++++...+.. | .......++..+|.++...|++++|+.+|++++.+
T Consensus 139 ~~Al~~~~~~------------------~---------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 184 (307)
T 2ifu_A 139 QQAAAVFENE------------------E---------------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM- 184 (307)
T ss_dssp HHHHHHHHHT------------------T---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhC------------------C---------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-
Confidence 5554442110 0 00112457778888888888888888888888876
Q ss_pred CCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHcCCHHHHHH
Q 004249 367 GVHND------GCLHLKIAECSLALKEREKSIIYFYKALQILEDNID-----ARLTLASLLLEDAKDEEAIS 427 (765)
Q Consensus 367 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~ 427 (765)
.|.+ ..++..+|.++...|++++|+..|++++ .+|.... ....++..+ ..|+.+.+..
T Consensus 185 -~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 185 -YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred -HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 3322 3477788888888899999999999999 8886542 233344444 5677766665
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.61 E-value=3.6e-14 Score=122.82 Aligned_cols=133 Identities=21% Similarity=0.336 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 206 (765)
+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45555555555666666666666665555555555555666666666666666666666655555555566666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249 207 GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT 259 (765)
Q Consensus 207 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 259 (765)
|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 66666666666666666655555666666666666666666666666555553
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.61 E-value=9.9e-17 Score=162.68 Aligned_cols=186 Identities=15% Similarity=0.070 Sum_probs=161.0
Q ss_pred HcCCHHHHHHHHHH----HHHhhCCCchHHHHHHHHHH------------HcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 103 ALGRYEEAISVLHE----VIRLEEELPNSYHILGLVHD------------ALGNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 103 ~~g~~~~A~~~~~~----~l~~~p~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
..+.+++|+..+.. ++.+.|.. +|...|.... .++++++|+..|++++..+|....++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 34567888888877 77777765 4444444332 567788888888888888888999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249 167 PWLIEQGDTTWAMSCLSEAVKADPND---------------FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231 (765)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 231 (765)
.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|+++++++|+++.+++
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 234 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999988 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH-HHHHHHHHHH
Q 004249 232 MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV-LKHIELVDLV 292 (765)
Q Consensus 232 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 292 (765)
.+|.+|...|++++|+..|+++++.+|++.. ++..++.++...|++++| ...|++++..
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKA--AKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876 788999999999999998 5567776655
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=3.4e-15 Score=147.33 Aligned_cols=195 Identities=10% Similarity=0.004 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
...+...|..++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|++..+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44567778888889999999999999998888888888899999999999999999999999888888888888999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDIL 250 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (765)
..|++++|+..|++++..+|+++..+...+.... ...++...........|.+..+...++.++ .|++++|+..+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 9999999999999888887765322221222211 122223333344456677777766666654 68888888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Q 004249 251 EDYLKGHPTEADFGVIDLLASMLVQM-NAYDRVLKHIELVDLV 292 (765)
Q Consensus 251 ~~~~~~~p~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~ 292 (765)
+++++.+|++.. ....++.++... +.+++|...|.++...
T Consensus 159 ~~al~~~p~~~~--~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGH--IRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHH--HTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred Hhhhccccchhh--hhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888887654 334555555555 6677888888777543
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.59 E-value=1.8e-15 Score=153.34 Aligned_cols=153 Identities=15% Similarity=0.079 Sum_probs=142.6
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---------------HHHHHHHHH
Q 004249 103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---------------SSLWKLIFP 167 (765)
Q Consensus 103 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~ 167 (765)
..+++++|+..+++++...|..+.++..+|.+++..|++++|+..|++++.+.|.+ ..++..+|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999999999999999998 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS- 246 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A- 246 (765)
++...|++++|+.+|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHh
Q 004249 247 VDILEDYLK 255 (765)
Q Consensus 247 ~~~~~~~~~ 255 (765)
...|++++.
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666654
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.59 E-value=3.1e-15 Score=130.82 Aligned_cols=114 Identities=10% Similarity=-0.035 Sum_probs=54.3
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249 148 YWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI 227 (765)
Q Consensus 148 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 227 (765)
|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249 228 EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA 261 (765)
Q Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 261 (765)
.+++.+|.++...|++++|+..|++++...|+++
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 4444444444444444444444444444444443
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.58 E-value=1.1e-14 Score=143.54 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004249 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY 237 (765)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 237 (765)
+...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34444444444444455555555555544444444444555555555555555555555555555555544555555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Q 004249 238 QKSGQIESSVDILEDYLKGHPTE 260 (765)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~~~p~~ 260 (765)
...|++++|+..|+++++.+|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 55555555555555554444433
No 124
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=9.7e-14 Score=120.03 Aligned_cols=134 Identities=21% Similarity=0.348 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ 172 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 172 (765)
.++..|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 226 (765)
|++++|+..+++++...|.+..++..+|.++...|++++|...+++++...|.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999999999999998863
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.58 E-value=1.6e-14 Score=126.28 Aligned_cols=125 Identities=17% Similarity=0.145 Sum_probs=106.6
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249 112 SVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN 191 (765)
Q Consensus 112 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 191 (765)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46777888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249 192 DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL 236 (765)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 236 (765)
++.+++.+|.++...|++++|+..|+++++..|+++........+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999999999999988887655444443
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.55 E-value=2.2e-14 Score=131.02 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=106.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH-HHHcCCH--HH
Q 004249 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW-LIEQGDT--TW 177 (765)
Q Consensus 101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~--~~ 177 (765)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678888888888888888888888888888888888888888888888888888888888888888 7788888 88
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 004249 178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEAL 230 (765)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 230 (765)
|+..+++++..+|.++.++..+|.++...|++++|+..|++++...|.+....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 88888888888888888888888888888888888888888888888775443
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=7.1e-14 Score=119.33 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred hCCHHHHHHHHHHHHHhC
Q 004249 206 LGNFQRAADVYRQMVQLC 223 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~~ 223 (765)
.|++++|+..|+++++++
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 444444444444444444
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.55 E-value=2e-13 Score=128.97 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
+...++..|..++..|++++|+..|++++ + .++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 44566778888888999999999988885 3 36788888999999999999999999999888888888888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDF----------------KLKFHLASLYVELGNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 226 (765)
...|++++|+..|++++...|.+. .+++.+|.++...|++++|+..|+++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999888777665 888888888888888888888888888888876
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-13 Score=117.61 Aligned_cols=117 Identities=11% Similarity=-0.007 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW 168 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 168 (765)
.....++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 35567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHH
Q 004249 169 LIEQGDTTWAMSCLSEAVKAD------PNDFKLKFHLASLYVE 205 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 205 (765)
+...|++++|+..|++++..+ |.+..++..++.+...
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999 8888888888877654
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.53 E-value=3.9e-13 Score=126.92 Aligned_cols=132 Identities=14% Similarity=0.047 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
..++.+|.++...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 356788999999999999999999886 33 778999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249 206 LGNFQRAADVYRQMVQLCPENI----------------EALKMGAKLYQKSGQIESSVDILEDYLKGHPTE 260 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 260 (765)
.|++++|+..|+++++..|.+. .++..+|.++...|++++|+..|+++++..|++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999999888766 888999999999999999999999999988875
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.53 E-value=5.9e-13 Score=132.59 Aligned_cols=164 Identities=9% Similarity=-0.006 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------H
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP------NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD------S 159 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------~ 159 (765)
..++..+..++..|+|++|+..+.+++...|... ..++.+|.++...|++++|+..+++++...+.. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444555666666666666666666665554432 223445555555555666666655555443221 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------C
Q 004249 160 SLWKLIFPWLIEQGDTTWAMSCLSEAV---KADPNDF----KLKFHLASLYVELGNFQRAADVYRQMVQLCPE------N 226 (765)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 226 (765)
.++..+|.+|...|++++|+.+|++++ ...|++. .++.++|.+|..+|++++|+.++++++...+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 345555555555555555555555555 2233322 34555555555555555555555555544321 1
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 004249 227 IEALKMGAKLYQKSGQIESS-VDILEDYLK 255 (765)
Q Consensus 227 ~~~~~~la~~~~~~g~~~~A-~~~~~~~~~ 255 (765)
..++..+|.+|...|++++| ..++++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34445555555555555555 444554443
No 132
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.52 E-value=1.4e-12 Score=125.90 Aligned_cols=246 Identities=13% Similarity=0.111 Sum_probs=134.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 004249 98 ASLHYALGRYEEAISVLHEVIRLEEELP-NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT 176 (765)
Q Consensus 98 a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 176 (765)
.+..+-.|+|..++.-.. +..|.+. ...+.+.++|..+|++... .. .+....+...++..+ . ++
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~-~-~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFL-D-TK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHH-T-TT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHh-c-cc--
Confidence 355666777777777332 2334333 3455566777777776631 11 111223333344333 2 22
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 177 WAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP--ENIEALKMGAKLYQKSGQIESSVDILEDYL 254 (765)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 254 (765)
|+..+++.+...+.+..++..+|.++...|++++|+.++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66677766665545555566777777777777777777777766665 566667777777777777777777777776
Q ss_pred hcCCC-----CCCHHHHHHHHHH--HHHhc--cHHHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHhcCChhHHHHH
Q 004249 255 KGHPT-----EADFGVIDLLASM--LVQMN--AYDRVLKHIELVDLVYYSGKEL--LLALKIKAGICHIQLGNTDKAEIL 323 (765)
Q Consensus 255 ~~~p~-----~~~~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 323 (765)
+.+|+ +. ++..++.. ....| ++.+|..+|+++... .|. ....+++ ++..+|++++|...
T Consensus 164 ~~~~d~~~~~d~---~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln---~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 164 NAIEDTVSGDNE---MILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLN---LHLQQRNIAEAQGI 233 (310)
T ss_dssp HHSCHHHHHHHH---HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHH---HHHHHTCHHHHHHH
T ss_pred hcCccccccchH---HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHH---HHHHcCCHHHHHHH
Confidence 66662 21 22333333 44444 666666666665444 222 1112222 55555566665555
Q ss_pred HHhhcccC---------CCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH
Q 004249 324 LTAIHWEN---------VSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC 373 (765)
Q Consensus 324 ~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 373 (765)
++.++... .|.++.++.+++.+....|+ +|.++++++... .|+++.
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence 55443321 14455555555555444454 555555555555 555543
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.52 E-value=5e-13 Score=120.40 Aligned_cols=128 Identities=19% Similarity=0.091 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE 171 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 171 (765)
..++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++..+|.++.++..+|.++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHhCCHHHHHHHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHL--ASLYVELGNFQRAADVYRQM 219 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a 219 (765)
.|++++|+.+|++++..+|.+..++..+ +..+...|++++|+..+.++
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555555555555544222 22244455555555555444
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.52 E-value=4.1e-13 Score=120.95 Aligned_cols=129 Identities=15% Similarity=0.086 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
..+..+|.++...|++++|+..|.+++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666556566666666666
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 004249 206 LGNFQRAADVYRQMVQLCPENIEALKM--GAKLYQKSGQIESSVDILEDYL 254 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~ 254 (765)
.|++++|+.+|++++...|.+..++.. ++..+...|++++|+..+.+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 666666666666666655555554422 2223445555555555555443
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.52 E-value=1.9e-13 Score=124.66 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=118.9
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhCCH--HH
Q 004249 135 HDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL-YVELGNF--QR 211 (765)
Q Consensus 135 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 211 (765)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 212 AADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 212 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|++..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999999999876
No 136
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.52 E-value=9.1e-13 Score=127.26 Aligned_cols=275 Identities=9% Similarity=-0.010 Sum_probs=200.8
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD-SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL 202 (765)
Q Consensus 124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (765)
+|+.++.+ .-.+-.|+|..++.... ++.|.+ ......+.++++.+|++... . ..+....+...++..
T Consensus 13 ~~~~lf~i-kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~-~~~~~~~a~~~la~~ 80 (310)
T 3mv2_B 13 DPMDYFNI-KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------D-PTSKLGKVLDLYVQF 80 (310)
T ss_dssp --CCTHHH-HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------C-SSSTTHHHHHHHHHH
T ss_pred CcHHHHHH-HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------C-CCCHHHHHHHHHHHH
Confidence 34444443 45566799999998544 334443 35666688899999998742 1 122233344555554
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249 203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A 282 (765)
+. +. |+..+++.+...+....++..+|.++...|++++|+.++.+.+..+|......++..++.++..+|+.+.|
T Consensus 81 ~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 81 LD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp HT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred hc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 42 32 88999998887666677778999999999999999999999999887333344677999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------ccHHHHHHHHHHHHhcC--ChhHHHHHHHhhcccCCCC--hHHHHHHHHHHHHccccH
Q 004249 283 LKHIELVDLVYYSGKE------LLLALKIKAGICHIQLG--NTDKAEILLTAIHWENVSD--HAESINEIADLFKNRELY 352 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~ 352 (765)
.+.++++.+. .+ ........-+.+.+..| ++.+|..+|+++.... |+ .+..+++ +++..|++
T Consensus 156 ~k~l~~~~~~----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln---~~~~~g~~ 227 (310)
T 3mv2_B 156 STIFDNYTNA----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLN---LHLQQRNI 227 (310)
T ss_dssp HHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHH---HHHHHTCH
T ss_pred HHHHHHHHhc----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHH---HHHHcCCH
Confidence 9999999888 55 44444444455566666 9999999999987665 54 3334444 89999999
Q ss_pred HHHHHHHHHHHhcc-----C---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHH
Q 004249 353 STALKYYHMLEANA-----G---VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEE 424 (765)
Q Consensus 353 ~~A~~~~~~~~~~~-----~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 424 (765)
++|...++.+++.. . +|+++.++.+++.+....|+ +|.++++++.+.+|+++-+.- ...+...|++
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d----~~~k~~~Fd~ 301 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH----HQEIDAKFDE 301 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH----HHHHHHHHHH
Confidence 99999999877651 0 28899999999999999998 899999999999999985433 2223344565
Q ss_pred HHHhc
Q 004249 425 AISLL 429 (765)
Q Consensus 425 A~~~~ 429 (765)
+..-|
T Consensus 302 ~~~ky 306 (310)
T 3mv2_B 302 LVRKY 306 (310)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 55444
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=3.2e-13 Score=145.79 Aligned_cols=185 Identities=9% Similarity=0.054 Sum_probs=158.7
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCHHHHH
Q 004249 95 LGDASLHYALGRY-EEAISVLHEVIRLEEELPNSYHILGLVHDALGN----------TAKAMGCYWLAACYKQKDSSLWK 163 (765)
Q Consensus 95 ~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~ 163 (765)
..........|.+ ++|+..+.+++..+|++..+|...+.++...|+ +++++.++.+++..+|++..+|.
T Consensus 32 ~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~ 111 (567)
T 1dce_A 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 111 (567)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3333444556655 577999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249 164 LIFPWLIEQG--DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG-NFQRAADVYRQMVQLCPENIEALKMGAKLYQKS 240 (765)
Q Consensus 164 ~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 240 (765)
..+.++...| ++++++.+++++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++...
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 9999999999 7799999999999999999999999999999999 899999999999999999999999999998875
Q ss_pred --------------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHH
Q 004249 241 --------------GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDR 281 (765)
Q Consensus 241 --------------g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~ 281 (765)
+.++++++++.+++..+|++.. +|+.++.++...+++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s--aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS--AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH--HHHHHHHHHSCCCCCSC
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCCCCcc--HHHHHHHHHhcCCCccc
Confidence 4467777777777777777766 66677777666665433
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-13 Score=116.84 Aligned_cols=120 Identities=13% Similarity=-0.045 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
+.....++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|.+..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG 207 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 207 (765)
++...|++++|+.+|++++..+|.+..++..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555443
No 139
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.51 E-value=7.2e-13 Score=124.52 Aligned_cols=162 Identities=13% Similarity=0.059 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC----CHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG----NTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
...++..|..+...+++++|+..|++++.. .++.+++.+|.+|.. + ++++|+.+|+++.+ +.++.+++.+|
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg 92 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 345667778899999999999999999764 689999999999998 7 99999999999965 67999999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249 167 PWLIE----QGDTTWAMSCLSEAVKADP--NDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKL 236 (765)
Q Consensus 167 ~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 236 (765)
.+|.. .+++++|+.+|+++++..| .++.+++.+|.+|.. .+++++|+.+|+++++. |.++.+++.+|.+
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMM 171 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 99998 8999999999999999887 358999999999999 88999999999999998 7778899999999
Q ss_pred HHHc-C-----CHHHHHHHHHHHHhcCC
Q 004249 237 YQKS-G-----QIESSVDILEDYLKGHP 258 (765)
Q Consensus 237 ~~~~-g-----~~~~A~~~~~~~~~~~p 258 (765)
|... | ++++|+.+|+++.+...
T Consensus 172 y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 172 FQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9864 3 89999999999998754
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.51 E-value=2.6e-13 Score=116.53 Aligned_cols=118 Identities=18% Similarity=0.158 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
...++..|..++..|++++|+..|++++...|.++.++..+|.++...|++++|+..+.+++..+|.++.++..+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN 208 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 208 (765)
..|++++|+.++++++..+|.++.++..++.++...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555444443
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.51 E-value=3.6e-14 Score=132.16 Aligned_cols=146 Identities=14% Similarity=0.015 Sum_probs=93.6
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH----------------HHHHHH
Q 004249 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS----------------SLWKLI 165 (765)
Q Consensus 102 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~----------------~~~~~l 165 (765)
...|++++|.+.+.......+.....+..+|.+++..|++++|+..|.+++...|.++ .++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555556666666666666666666666666666666554 666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249 166 FPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIES 245 (765)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 245 (765)
|.++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++..+
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777766666555
Q ss_pred HH
Q 004249 246 SV 247 (765)
Q Consensus 246 A~ 247 (765)
+.
T Consensus 175 ~~ 176 (198)
T 2fbn_A 175 KD 176 (198)
T ss_dssp --
T ss_pred HH
Confidence 54
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.49 E-value=4.5e-13 Score=115.49 Aligned_cols=122 Identities=18% Similarity=0.116 Sum_probs=117.2
Q ss_pred hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA 200 (765)
Q Consensus 121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 200 (765)
.|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++..+|.++.++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249 201 SLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ 242 (765)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 242 (765)
.++...|++++|+..|++++..+|.+..++..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999988774
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.49 E-value=3.6e-14 Score=132.17 Aligned_cols=164 Identities=13% Similarity=0.019 Sum_probs=125.8
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF----------- 193 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------- 193 (765)
+......+.+....|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 83 (198)
T ss_dssp ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 334445666777788888888888776666666778899999999999999999999999999988887
Q ss_pred -----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004249 194 -----KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDL 268 (765)
Q Consensus 194 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 268 (765)
.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++..+|++.. ++..
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~ 161 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD--IRNS 161 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH--HHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999998866 7789
Q ss_pred HHHHHHHhccHHHHH-HHHHHHH
Q 004249 269 LASMLVQMNAYDRVL-KHIELVD 290 (765)
Q Consensus 269 l~~~~~~~~~~~~A~-~~~~~~~ 290 (765)
++.++...++..++. ..+.++.
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 162 YELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988888777 4444443
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.49 E-value=4.8e-13 Score=120.16 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP 167 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 167 (765)
+.....++..|..++..|+|++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|++..+|+.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249 168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA 200 (765)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 200 (765)
++...|++++|+.+|++++.++|++..++...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 666666666666666666666666655444444
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=6.4e-13 Score=114.06 Aligned_cols=124 Identities=15% Similarity=0.029 Sum_probs=119.3
Q ss_pred hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249 120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL 199 (765)
Q Consensus 120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 199 (765)
.+|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249 200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI 243 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 243 (765)
|.++...|++++|+..|++++...|++..++..++.++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999876
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.49 E-value=2e-12 Score=128.70 Aligned_cols=172 Identities=9% Similarity=0.075 Sum_probs=135.5
Q ss_pred hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 004249 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS------SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND-- 192 (765)
Q Consensus 121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 192 (765)
+|.....+...+..+...|++++|+..+.+++...|... ..++.+|.++...|++++|+..+++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344455667788888999999999999999988877654 335568888888999999999999998764433
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249 193 ----FKLKFHLASLYVELGNFQRAADVYRQMV---QLCPENI----EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA 261 (765)
Q Consensus 193 ----~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 261 (765)
..++..+|.+|...|++++|+.+|++++ +..|++. .++.++|.+|...|++++|+.++++++...+...
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 4678889999999999999999999998 4556542 5788899999999999999999998887643211
Q ss_pred ----CHHHHHHHHHHHHHhccHHHH-HHHHHHHHHH
Q 004249 262 ----DFGVIDLLASMLVQMNAYDRV-LKHIELVDLV 292 (765)
Q Consensus 262 ----~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 292 (765)
...+++.+|.++...|++++| ..++++++..
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 144677888889999998888 7778888776
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.49 E-value=6.5e-13 Score=132.26 Aligned_cols=163 Identities=9% Similarity=-0.022 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCch------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HH
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILGLVHDALGNTAKAMGCYWLAACYKQKD------SS 160 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~ 160 (765)
.+...+..++..|++++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++...+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3334455566666666666666666655444432 12235555555555555555555555532211 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---C----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------H
Q 004249 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKA---D----PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------I 227 (765)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 227 (765)
++..+|.+|...|++++|+.+|++++.. . +....++.++|.+|..+|++++|+.++++++++.+.. +
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 3455555555555555555555555531 1 1112344455555555555555555555554433221 3
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 004249 228 EALKMGAKLYQKSGQ-IESSVDILEDYLK 255 (765)
Q Consensus 228 ~~~~~la~~~~~~g~-~~~A~~~~~~~~~ 255 (765)
.++..+|.++...|+ +++|+..|++++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 344444444444442 3444444444443
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.48 E-value=8.5e-13 Score=118.56 Aligned_cols=106 Identities=12% Similarity=0.057 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249 157 KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL 236 (765)
Q Consensus 157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 236 (765)
.+...+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 237 YQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
+...|++++|+..|+++++.+|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 66666666666666666666666655
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.46 E-value=2.5e-12 Score=109.28 Aligned_cols=116 Identities=23% Similarity=0.333 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (765)
..+++.+|.++...|++++|+..|.+++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS 240 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 240 (765)
..|++++|+..+++++...|.++.++..++.++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666655543
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.46 E-value=4.5e-13 Score=114.87 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
....++..|..++..|+|++|+..|+++++.+|+++.. .++...|.+..+|.++|.++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al 67 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHH
Confidence 45667888899999999999999999999999985431 01111122223555555555
Q ss_pred HHcCCHHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249 170 IEQGDTTWAMSCLSEAVKA-------DPNDFKLK----FHLASLYVELGNFQRAADVYRQMVQLCPENI 227 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 227 (765)
..+|++++|+.++++++++ +|++..+| +++|.++..+|++++|+..|++++++.|++.
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 5555555555555555555 66666666 6666666666666666666666666665553
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.46 E-value=5.6e-13 Score=113.44 Aligned_cols=99 Identities=11% Similarity=0.017 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF-------KLKFH 198 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~ 198 (765)
.++..+|.+++..|++++|+.+|+++++++|+++.+|..+|.++..+|++++|+..++++++++|++. .++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555544321 24445
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249 199 LASLYVELGNFQRAADVYRQMVQLCP 224 (765)
Q Consensus 199 la~~~~~~g~~~~A~~~~~~al~~~p 224 (765)
+|.++...|++++|+..|++++...|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 55555555555555555555555544
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.46 E-value=4.3e-13 Score=112.96 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ 172 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 172 (765)
.++..|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCH
Q 004249 173 GDTTWAMSCLSEAVKADPNDF 193 (765)
Q Consensus 173 g~~~~A~~~~~~al~~~p~~~ 193 (765)
|++++|+..|+++++.+|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888877654
No 153
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.45 E-value=6.6e-14 Score=148.31 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=83.3
Q ss_pred cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249 104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLS 183 (765)
Q Consensus 104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 183 (765)
.+++++|+..|+.++...|..+.++..+|.+++..|++++|+..|.+++.++|.+.... .+.
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~~------ 308 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS------------EKE------ 308 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC------------HHH------
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC------------hHH------
Confidence 34555666666666666666677777777777777777777777777777766652100 000
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH
Q 004249 184 EAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF 263 (765)
Q Consensus 184 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 263 (765)
.....+....++.++|.++..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 309 -~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~- 386 (457)
T 1kt0_A 309 -SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA- 386 (457)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C-
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-
Confidence 000001113444555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred HHHHHHHHHHHHhccHHHHH
Q 004249 264 GVIDLLASMLVQMNAYDRVL 283 (765)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~A~ 283 (765)
++..++.++...++++++.
T Consensus 387 -a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 387 -ARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444
No 154
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.45 E-value=1.7e-10 Score=122.64 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249 352 YSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL 415 (765)
Q Consensus 352 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 415 (765)
.+.....|++++.. .|..+.+|+..+..+...|+.+.|...|++++.. |.+...++..+..
T Consensus 195 ~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~ 255 (493)
T 2uy1_A 195 ESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV 255 (493)
T ss_dssp HHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh
Confidence 34567889999887 7899999999999999999999999999999999 9887766654443
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.45 E-value=6.3e-13 Score=111.91 Aligned_cols=100 Identities=20% Similarity=0.126 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 206 (765)
.++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 004249 207 GNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 207 g~~~~A~~~~~~al~~~p~~ 226 (765)
|++++|+..|+++++.+|.+
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 66666666666666666554
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.45 E-value=1.1e-12 Score=113.74 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=51.2
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249 122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201 (765)
Q Consensus 122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 201 (765)
|.++..++.+|.+++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34444444455555555555555555555544444444444444555444555555555555444444444444444444
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCC
Q 004249 202 LYVELGNFQRAADVYRQMVQLCPE 225 (765)
Q Consensus 202 ~~~~~g~~~~A~~~~~~al~~~p~ 225 (765)
++...|++++|+..|++++...|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 444444444444444444444443
No 157
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.44 E-value=4.1e-10 Score=119.69 Aligned_cols=360 Identities=12% Similarity=0.002 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHhcc---CCCCHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGN-TAKAMGCYWLAACY---KQKDSSLWKLI 165 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~---~p~~~~~~~~l 165 (765)
.+...+..+...+-.|+++.+..+|++++...| +.+.|..........+. .+.....|+.++.. +|.+...|...
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 355667777777777999999999999999888 77788887777766663 45567788888764 67888999888
Q ss_pred HHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--------------HhCCHHHHHHHHHHHHHhCCC-C
Q 004249 166 FPWLI----EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV--------------ELGNFQRAADVYRQMVQLCPE-N 226 (765)
Q Consensus 166 a~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--------------~~g~~~~A~~~~~~al~~~p~-~ 226 (765)
+..+. ..|+.+.+..+|++++...+.+..-++..-..+. ..+.+..|...|+.+....+. +
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 77654 3467888999999999964343332222111111 123344555556655544333 3
Q ss_pred HHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc
Q 004249 227 IEALKMGAKLYQKS--GQ-----IESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKEL 299 (765)
Q Consensus 227 ~~~~~~la~~~~~~--g~-----~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 299 (765)
...|......-... |- .+.....|++++...|..+. +|...+..+...|+.+.|..+|++++.. |.
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~--lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~---- 244 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEE--VYFFYSEYLIGIGQKEKAKKVVERGIEM-SD---- 244 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC----
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC----
Confidence 44554444432221 11 34567899999999998755 7889999999999999999999999998 43
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHhhcc-c--------CCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC
Q 004249 300 LLALKIKAGICHIQLGNTDKAEILLTAIHW-E--------NVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHN 370 (765)
Q Consensus 300 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 370 (765)
....+...+.. .+.++....+..... . ..+....+|...+......+..+.|..+|+++ .. .+.
T Consensus 245 ~~~l~~~y~~~----~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~ 317 (493)
T 2uy1_A 245 GMFLSLYYGLV----MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGV 317 (493)
T ss_dssp SSHHHHHHHHH----TTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCC
T ss_pred cHHHHHHHHhh----cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCC
Confidence 22333333322 111222111111110 0 01222457788888887888999999999999 44 334
Q ss_pred CHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhh
Q 004249 371 DGCLHLKIAECSLALK-EREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWW 449 (765)
Q Consensus 371 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 449 (765)
...+|...|.+....+ +.+.|...|+.+++..|++++.+...+......|+.+.|..+|+++.. .
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~---------- 383 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK----T---------- 383 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----B----------
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----H----------
Confidence 6678887788877777 599999999999999999999888888888999999999999999843 1
Q ss_pred hhhHHHHHHHHHHHhcchhHHHHHhhHHHHh
Q 004249 450 LNIRIKIKLCRIYKAKGMIEGFVDMLLPLVC 480 (765)
Q Consensus 450 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 480 (765)
..++......-...|+.+.+..++.+.+.
T Consensus 384 --~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 384 --SRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp --HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35666677777778988888777877764
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.43 E-value=2.1e-12 Score=109.84 Aligned_cols=110 Identities=13% Similarity=-0.013 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-------HH
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-------SL 161 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-------~~ 161 (765)
.........|..++..|+|++|+..|++++..+|+++.++..+|.+|..+|++++|+..|+++++++|++. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34455667899999999999999999999999999999999999999999999999999999999987653 57
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249 162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL 199 (765)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 199 (765)
+..+|.++...|++++|+.+|++++...| +++....+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHH
Confidence 88899999999999999999999999887 45554443
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.43 E-value=1.1e-12 Score=117.48 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRL------------------EEELPNSYHILGLVHDALGNTAKAMGCYWL 150 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 150 (765)
..+..+...|..++..|+|++|+..|.+++.. +|.+..++..+|.++..+|++++|+..+.+
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35667788899999999999999999999988 555556666666666666666666666666
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHH
Q 004249 151 AACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF-KLKFHLASLYVE 205 (765)
Q Consensus 151 a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 205 (765)
++.++|.++.+++.+|.++..+|++++|+..|++++.++|+++ .+...++.+...
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666665 444455544443
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.43 E-value=2.3e-13 Score=144.13 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHH
Q 004249 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN---------------IEALKMGAKLYQ 238 (765)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~ 238 (765)
++++|+..++.++...|....++..+|.++...|++++|+..|++++++.|.+ ..++.++|.+|.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443334444444444444444444444444444444444443 688999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChh
Q 004249 239 KSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTD 318 (765)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (765)
.+|++++|+..|++++..+|++.. +++.+|.++..+|++++|+..|++++++ .|....++..++.++...++++
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~--a~~~~g~a~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEK--GLYRRGEAQLLMNEFESAKGDFEKVLEV----NPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHTT----C----CHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHH--HHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999866 8899999999999999999999999999 7788899999999999999999
Q ss_pred HHHH-HHHhhc
Q 004249 319 KAEI-LLTAIH 328 (765)
Q Consensus 319 ~A~~-~~~~~~ 328 (765)
++.. .+.+++
T Consensus 403 ~a~~~~~~~~f 413 (457)
T 1kt0_A 403 ERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 8875 455554
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.42 E-value=8.1e-13 Score=113.31 Aligned_cols=115 Identities=11% Similarity=-0.050 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
..+...|..++..|++++|+..|+++++++|+++.. .++...|.+..+|.++|.++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHHHH
Confidence 455666777777777777777777777777665432 0111223344599999999999
Q ss_pred hCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 206 LGNFQRAADVYRQMVQL-------CPENIEAL----KMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
+|++++|+..|++++++ +|++..+| +++|.++..+|++++|+..|++++++.|++..
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999 99999999 99999999999999999999999999999876
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=3.8e-12 Score=110.31 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=99.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004249 154 YKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG 233 (765)
Q Consensus 154 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 233 (765)
.+|.++..+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249 234 AKLYQKSGQIESSVDILEDYLKGHPT 259 (765)
Q Consensus 234 a~~~~~~g~~~~A~~~~~~~~~~~p~ 259 (765)
|.++...|++++|+..|++++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999998887
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.42 E-value=1.8e-12 Score=121.25 Aligned_cols=158 Identities=12% Similarity=0.097 Sum_probs=91.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHcCC
Q 004249 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY------KQKDSSLWKLIFPWLIEQGD 174 (765)
Q Consensus 101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~g~ 174 (765)
++..|++++|...++.+....+..+.++..+|.++...|++++|+..+++++.. .|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345677777777544433322244566777777777777777777777777662 23334556666777777777
Q ss_pred HHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcC
Q 004249 175 TTWAMSCLSEAVKA---DPND----FKLKFHLASLYVELGNFQRAADVYRQMVQLCPE--N----IEALKMGAKLYQKSG 241 (765)
Q Consensus 175 ~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g 241 (765)
+++|+..+++++.. .+++ ..++..+|.++...|++++|+..+++++...+. + ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777666665 2322 344566666666666666666666666654221 1 123455666666666
Q ss_pred CHHHHHHHHHHHHhcCC
Q 004249 242 QIESSVDILEDYLKGHP 258 (765)
Q Consensus 242 ~~~~A~~~~~~~~~~~p 258 (765)
++++|+..++++++...
T Consensus 162 ~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 66666666666555433
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.41 E-value=6.6e-12 Score=105.34 Aligned_cols=111 Identities=16% Similarity=0.081 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE 171 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 171 (765)
..++..|..++..|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASL 202 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (765)
.|++++|+..+++++..+|.++.++..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5555555555555555555555555554443
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.41 E-value=4.9e-12 Score=106.14 Aligned_cols=113 Identities=19% Similarity=0.102 Sum_probs=84.1
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (765)
+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLY 237 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 237 (765)
..|++++|+..++++++..|+++.++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 777777777777777777777777766666553
No 166
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=7.5e-12 Score=135.08 Aligned_cols=174 Identities=9% Similarity=0.053 Sum_probs=160.4
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC--
Q 004249 140 NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD----------TTWAMSCLSEAVKADPNDFKLKFHLASLYVELG-- 207 (765)
Q Consensus 140 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 207 (765)
..++|+..+.+++..+|++..+|...+.++...|+ +++++.++++++..+|++..+|...+.++...|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34678999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh----------
Q 004249 208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG-QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM---------- 276 (765)
Q Consensus 208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~---------- 276 (765)
++++++..+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+.. +|+..+.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s--aW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH--HHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHhhcccccccccc
Confidence 7799999999999999999999999999999999 999999999999999999877 899999998875
Q ss_pred ----ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhH
Q 004249 277 ----NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDK 319 (765)
Q Consensus 277 ----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (765)
+.++++++++.+++.. .|....+|+.++.++...+.+++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~----~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHH----CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhh----CCCCccHHHHHHHHHhcCCCccc
Confidence 6789999999999988 77788888888888877777554
No 167
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.40 E-value=5.7e-12 Score=125.37 Aligned_cols=166 Identities=8% Similarity=0.110 Sum_probs=134.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHH
Q 004249 128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSS------LWKLIFPWLIEQGDTTWAMSCLSEAVKADPND------FKL 195 (765)
Q Consensus 128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 195 (765)
+...+..+...|++++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++...+.. ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344577888999999999999999998776654 23358888888999999999999999864332 347
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HH
Q 004249 196 KFHLASLYVELGNFQRAADVYRQMVQLC---PE----NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FG 264 (765)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~ 264 (765)
+..+|.+|...|++++|+.+|+++++.. |. ...++.++|.+|...|++++|+.+++++++..+.... ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8999999999999999999999998532 12 2457889999999999999999999999887543321 45
Q ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHHh
Q 004249 265 VIDLLASMLVQMN-AYDRVLKHIELVDLVY 293 (765)
Q Consensus 265 ~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~ 293 (765)
++..+|.++...| .+++|+..+++++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 7889999999999 4699999999998873
No 168
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.40 E-value=1.2e-11 Score=104.98 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
...++..|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG 207 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 207 (765)
..|++++|+..+++++..+|.++.++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999987765
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.1e-11 Score=129.20 Aligned_cols=202 Identities=13% Similarity=0.073 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc-----------------hHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELP-----------------NSYHILGLVHDALGNTAKAMGCYWLAACYK 155 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 155 (765)
..+.+|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999888653 358899999999999999999999998765
Q ss_pred CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 004249 156 QKDS------SLWKLIFPWLIEQGDTTWAMSCLSEAVKAD------PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC 223 (765)
Q Consensus 156 p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 223 (765)
+... .+...++.++...|++++|+.++++++... +....++..+|.++...|++++|+..+++++...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 4432 344567888888999999999999988752 2336788999999999999999999999987752
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 224 ------PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-----FGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 224 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
+....++..++.+|...|++++|...+++++...+.... ...+..+|.++...|++++|...|.+++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 223678899999999999999999999999876543322 335667888888899999999999999877
Q ss_pred hc
Q 004249 293 YY 294 (765)
Q Consensus 293 ~~ 294 (765)
+.
T Consensus 246 ~~ 247 (434)
T 4b4t_Q 246 YH 247 (434)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.39 E-value=1.8e-12 Score=116.17 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhcc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACY------------------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAV 186 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 186 (765)
+..+...|..++..|++++|+..|.+++.. +|.+..++..+|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467888999999999999999999999988 55566777888888888888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc
Q 004249 187 KADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI-EALKMGAKLYQKS 240 (765)
Q Consensus 187 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 240 (765)
.++|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888777 5555555554433
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=8e-12 Score=109.88 Aligned_cols=113 Identities=15% Similarity=0.080 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
....++..|..++..|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|+++.+++.+|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 34445555566666666666666666666665554 455555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249 167 PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL 202 (765)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (765)
.++...|++++|+.+|++++..+|++..++..++.+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 555555555555555555555555555555544444
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.38 E-value=1.2e-11 Score=105.73 Aligned_cols=108 Identities=16% Similarity=0.027 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHH
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPW 168 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~ 168 (765)
+..|..++..|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4455556666666666666666666666555 456666666666666666666666666666655 5555666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL 202 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (765)
+...|++++|+..|++++...|+++.+...+..+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 6666666666666666666556555544444333
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.38 E-value=9.2e-12 Score=116.34 Aligned_cols=159 Identities=11% Similarity=-0.019 Sum_probs=123.0
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhCC
Q 004249 135 HDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA------DPNDFKLKFHLASLYVELGN 208 (765)
Q Consensus 135 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 208 (765)
.+..|++++|...++......+....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356789999999665554433356788889999999999999999999999883 34456778899999999999
Q ss_pred HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhc
Q 004249 209 FQRAADVYRQMVQL---CPEN----IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMN 277 (765)
Q Consensus 209 ~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~ 277 (765)
+++|+..+++++.. .+++ ..++..+|.++...|++++|+..+++++...+.... ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999999887 4433 456888999999999999999999998876443322 224568899999999
Q ss_pred cHHHHHHHHHHHHHHh
Q 004249 278 AYDRVLKHIELVDLVY 293 (765)
Q Consensus 278 ~~~~A~~~~~~~~~~~ 293 (765)
++++|+..+++++...
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988874
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.38 E-value=9.6e-12 Score=106.44 Aligned_cols=114 Identities=11% Similarity=-0.038 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFHL 199 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 199 (765)
.+++.+|.++...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3567778888888888888888888888877777 678888888888888888888888888888877 7778888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249 200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK 239 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 239 (765)
|.++...|++++|+..|++++...|+++.+......+-..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 8888888888888888888888888877666555544433
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.36 E-value=5.6e-12 Score=104.64 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 004249 155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE--NIEALKM 232 (765)
Q Consensus 155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 232 (765)
+|++..++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 34555555556666666666666666666666666666666666666666666666666666666666666 5666666
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCCC
Q 004249 233 GAKLYQKS-GQIESSVDILEDYLKGHPTE 260 (765)
Q Consensus 233 la~~~~~~-g~~~~A~~~~~~~~~~~p~~ 260 (765)
+|.++... |++++|+..+++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 66666666 66666666666666655554
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.34 E-value=3.9e-12 Score=105.66 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=88.5
Q ss_pred hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 004249 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN--DFKLKFH 198 (765)
Q Consensus 121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 198 (765)
+|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++...|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57777788888888888888888888888888888888888888888888888888888888888888888 8888888
Q ss_pred HHHHHHHh-CCHHHHHHHHHHHHHhCCCC
Q 004249 199 LASLYVEL-GNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 199 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 226 (765)
+|.++... |++++|+.++++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888888 88888888888888887765
No 177
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.34 E-value=2.2e-12 Score=110.32 Aligned_cols=71 Identities=11% Similarity=-0.080 Sum_probs=52.9
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHH----------HHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249 103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTA----------KAMGCYWLAACYKQKDSSLWKLIFPWLIEQ 172 (765)
Q Consensus 103 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 172 (765)
+.+.|++|+..++++++.+|+++++|+.+|.++...++++ +|+..|+++++++|++..+|+.+|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4566888888888888888888888888888888887764 666666666666666666666666666655
Q ss_pred C
Q 004249 173 G 173 (765)
Q Consensus 173 g 173 (765)
|
T Consensus 94 g 94 (158)
T 1zu2_A 94 A 94 (158)
T ss_dssp H
T ss_pred c
Confidence 4
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.33 E-value=4.5e-13 Score=142.38 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=111.8
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204 (765)
Q Consensus 125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 204 (765)
+.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|+++.++..+|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34556677788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCCCC
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKL--YQKSGQIESSVDILE-----------DYLKGHPTEAD 262 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~~~ 262 (765)
.+|++++|+..|+++++..|++..++..++.+ +...|++++|+..++ +++...|....
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 88999999999999888888888888888877 788888999998888 67776666543
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.33 E-value=1.1e-12 Score=132.87 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE 171 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 171 (765)
..+...|..++..|+|++|+..|++++...|.+.. +...|++.++...+. ..++..+|.++..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 34445555556666666666666666655554331 111222222222211 1256666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHH
Q 004249 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY-QKSGQIESSVDIL 250 (765)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~ 250 (765)
+|++++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+. ...+..+++...|
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777776666666666666666676666667777777777666666666666666666663 3345556666666
Q ss_pred HHHHhcCCCCC
Q 004249 251 EDYLKGHPTEA 261 (765)
Q Consensus 251 ~~~~~~~p~~~ 261 (765)
.+++...|.++
T Consensus 323 ~~~l~~~p~~~ 333 (338)
T 2if4_A 323 KGIFKGKDEGG 333 (338)
T ss_dssp -----------
T ss_pred HHhhCCCCCCC
Confidence 66666666544
No 180
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.6e-11 Score=107.93 Aligned_cols=120 Identities=17% Similarity=0.087 Sum_probs=113.5
Q ss_pred hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 004249 120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLK 196 (765)
Q Consensus 120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 196 (765)
..|.+...++.+|.++...|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|.++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457788999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249 197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK 239 (765)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 239 (765)
+.+|.++...|++++|+.+|++++..+|++..++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888877543
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=9.8e-12 Score=106.55 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHH
Q 004249 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND-------FKLKFHL 199 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l 199 (765)
.++.+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+.++++++...|.+ +.++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444443333 3444444
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249 200 ASLYVELGNFQRAADVYRQMVQLCP 224 (765)
Q Consensus 200 a~~~~~~g~~~~A~~~~~~al~~~p 224 (765)
|.++...|++++|+..|++++...|
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4444444444444444444444444
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.32 E-value=1.4e-12 Score=138.48 Aligned_cols=134 Identities=19% Similarity=0.093 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249 93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ 172 (765)
Q Consensus 93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 172 (765)
.+...|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++.++..+|.++..+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHHhCCCC
Q 004249 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASL--YVELGNFQRAADVYR-----------QMVQLCPEN 226 (765)
Q Consensus 173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 226 (765)
|++++|+..|+++++.+|++..++..++.+ +...|++++|+..++ +++...|..
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999999999988 889999999999999 777777665
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.32 E-value=2.2e-12 Score=130.60 Aligned_cols=103 Identities=17% Similarity=0.087 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL-YV 204 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 204 (765)
.+++.+|.++..+|++++|+..|++++.++|++..+++.+|.++..+|++++|+..|++++.++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999988 45
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHH
Q 004249 205 ELGNFQRAADVYRQMVQLCPENIE 228 (765)
Q Consensus 205 ~~g~~~~A~~~~~~al~~~p~~~~ 228 (765)
..+..+.+...|.+++...|.++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788999999999999987753
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.30 E-value=4.8e-12 Score=106.02 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004249 138 LGNTAKAMGCYWLAACY---KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD 214 (765)
Q Consensus 138 ~g~~~~A~~~~~~a~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 214 (765)
+|++++|+..|+++++. +|+++.++..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666666666666666 455666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCHHHH
Q 004249 215 VYRQMVQLCPENIEAL 230 (765)
Q Consensus 215 ~~~~al~~~p~~~~~~ 230 (765)
.+++++...|+++.+.
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 6666666666665544
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.29 E-value=2.9e-11 Score=103.53 Aligned_cols=117 Identities=9% Similarity=-0.054 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------HHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD-------SSLW 162 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~ 162 (765)
....++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 455678889999999999999999999999999999999999999999999999999999999998876 8899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG 207 (765)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 207 (765)
..+|.++...|++++|+.+|++++...| ++.....++.+....+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 6888888887766543
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.29 E-value=3.5e-11 Score=123.00 Aligned_cols=139 Identities=18% Similarity=0.098 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
...+...|..++..|+|++|+..|++++...|..+ +..........+|.+..++..+|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466778888888888888888888887433211 001122223344555556666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSV 247 (765)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 247 (765)
.+|++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666665555554
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.28 E-value=3.4e-12 Score=106.98 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=89.3
Q ss_pred HcCCHHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249 103 ALGRYEEAISVLHEVIRL---EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAM 179 (765)
Q Consensus 103 ~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 179 (765)
..|++++|+..|++++.. +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Q 004249 180 SCLSEAVKADPNDFKLKFHLASLY 203 (765)
Q Consensus 180 ~~~~~al~~~p~~~~~~~~la~~~ 203 (765)
..+++++...|+++.+......+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999987754443333
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.27 E-value=1.2e-11 Score=105.66 Aligned_cols=91 Identities=18% Similarity=0.117 Sum_probs=70.8
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249 137 ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT----------WAMSCLSEAVKADPNDFKLKFHLASLYVEL 206 (765)
Q Consensus 137 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 206 (765)
+.+.+++|++.++++++++|+++.+|..+|.++...++++ +|+..|+++++++|++..+++.+|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4567888888888888888888888888888888887654 788888888888888888888888888776
Q ss_pred C-----------CHHHHHHHHHHHHHhCCCCH
Q 004249 207 G-----------NFQRAADVYRQMVQLCPENI 227 (765)
Q Consensus 207 g-----------~~~~A~~~~~~al~~~p~~~ 227 (765)
| ++++|+.+|+++++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 4 67777777777777777664
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.26 E-value=3.7e-11 Score=122.85 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 205 (765)
..+..+|..++..|++++|+..|+++++..|..+ +....+.....+|.+..++..+|.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888999999999999999999887644321 1112444555778889999999999999
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 004249 206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKH 285 (765)
Q Consensus 206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~ 285 (765)
+|++++|+.+++++++.+|+++.+++.+|.+|...|++++|+..|+++++.+|++.. ++..++.++...++++++...
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~--~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA--IQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999866 778999999999999988754
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.23 E-value=5.3e-10 Score=118.37 Aligned_cols=214 Identities=11% Similarity=0.009 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 004249 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF---------------GVIDLLASMLVQMNAYDRVLKHIELVDLVY 293 (765)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 293 (765)
.....|..+...|++++|++.|.++++..|..... .++..+|.+|...|++++|++++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666665554331 124456666666666666666666665552
Q ss_pred cCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc----CCC
Q 004249 294 YSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA----GVH 369 (765)
Q Consensus 294 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~ 369 (765)
+..... .....+...++.++...|++++|+.++++++... ..+
T Consensus 86 ~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (434)
T 4b4t_Q 86 MQFAKS---------------------------------KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF 132 (434)
T ss_dssp HTSCHH---------------------------------HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHccch---------------------------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence 211000 0011234445555566666666666666665431 123
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcc
Q 004249 370 NDGCLHLKIAECSLALKEREKSIIYFYKALQIL------EDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSD 443 (765)
Q Consensus 370 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 443 (765)
....++..+|.++...|++.+|...+++++... |...+++..++.+|...|++++|..++++++...+...
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--- 209 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY--- 209 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC---
Confidence 335566777777777777777777777776542 22345666777777777777777777777665433321
Q ss_pred cchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHh
Q 004249 444 KTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVC 480 (765)
Q Consensus 444 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 480 (765)
.+......++...|.++...|++++|...+..++.
T Consensus 210 --~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 210 --CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp --CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11122346677888999999999999999988875
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.18 E-value=1.6e-10 Score=103.28 Aligned_cols=131 Identities=17% Similarity=0.174 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------H
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP------NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD------S 159 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------~ 159 (765)
..+...|..++..|++++|+..+++++...+... .++..+|.++...|++++|+.++++++...+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3445666777777777777777777776654322 356666666666666666666666666543221 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADP------NDFKLKFHLASLYVELGNFQRAADVYRQMVQL 222 (765)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 222 (765)
.++..+|.++...|++++|+.++++++...+ ....++..+|.++...|++++|+..+++++++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455555555566666666665555554421 11233444555555555555555555555443
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.18 E-value=1.1e-10 Score=104.22 Aligned_cols=131 Identities=16% Similarity=0.093 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------H
Q 004249 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS------SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND------F 193 (765)
Q Consensus 126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 193 (765)
.++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.++++++...+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4666777777777777777777777776543211 355666677777777777777776666553221 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249 194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKSGQIESSVDILEDYLKG 256 (765)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 256 (765)
.++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+..++++++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455566666666666666666666665542211 234445555555555555555555555443
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.09 E-value=5.9e-10 Score=92.82 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249 177 WAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG 256 (765)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 256 (765)
+|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555566666666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred CCCCCC
Q 004249 257 HPTEAD 262 (765)
Q Consensus 257 ~p~~~~ 262 (765)
.|....
T Consensus 83 ~~~~~~ 88 (115)
T 2kat_A 83 AQSRGD 88 (115)
T ss_dssp HHHHTC
T ss_pred cccccc
Confidence 554433
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.04 E-value=6.5e-10 Score=91.85 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC------HHH
Q 004249 335 HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDN------IDA 408 (765)
Q Consensus 335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 408 (765)
++..+..+|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|+++++++|++ ..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 4678899999999999999999999999999 89999999999999999999999999999999999999 889
Q ss_pred HHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249 409 RLTLASLLLEDAKDEEAISLLTPPMS 434 (765)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (765)
++.++.++...|++++|+..+++...
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 99999999999999988888876544
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.04 E-value=1.4e-09 Score=90.51 Aligned_cols=82 Identities=12% Similarity=-0.038 Sum_probs=53.3
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249 143 KAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL 222 (765)
Q Consensus 143 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 222 (765)
+|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35566666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred CC
Q 004249 223 CP 224 (765)
Q Consensus 223 ~p 224 (765)
.|
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 55
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.1e-10 Score=94.86 Aligned_cols=91 Identities=16% Similarity=0.102 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 004249 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMG 233 (765)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 233 (765)
.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|++ ..++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555555555555555555 5555555
Q ss_pred HHHHHHcCCHHHHHHHH
Q 004249 234 AKLYQKSGQIESSVDIL 250 (765)
Q Consensus 234 a~~~~~~g~~~~A~~~~ 250 (765)
|.++...|+++.|+..+
T Consensus 85 ~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHhHhhhHhHH
Confidence 55555555555544433
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.00 E-value=2.4e-09 Score=84.63 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY 203 (765)
Q Consensus 127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 203 (765)
+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444443333333
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.99 E-value=4.2e-09 Score=83.16 Aligned_cols=85 Identities=26% Similarity=0.414 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249 157 KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL 236 (765)
Q Consensus 157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 236 (765)
.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcC
Q 004249 237 YQKSG 241 (765)
Q Consensus 237 ~~~~g 241 (765)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 77654
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.93 E-value=3.9e-09 Score=85.03 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 189 DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 189 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++..|....
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 35555555555555555555555555555555555555555555555555555555555555555555444333
No 200
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.90 E-value=3.9e-08 Score=96.54 Aligned_cols=74 Identities=12% Similarity=-0.008 Sum_probs=49.9
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249 187 KADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA 261 (765)
Q Consensus 187 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 261 (765)
..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|...
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 445666677766766666667777777777777777653 45566667777777777777777777777766653
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.89 E-value=6.1e-09 Score=83.86 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=40.1
Q ss_pred hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004249 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD 189 (765)
Q Consensus 121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 189 (765)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 455555666666666666666666666666666666655566666666666666666666666655543
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.88 E-value=2.6e-09 Score=86.08 Aligned_cols=90 Identities=18% Similarity=0.171 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEELPN-SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 173 (765)
+.+|..++..|++++|+..|++++..+|.++. +++.+|.++...|++++|+..|++++.++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777888888888888888888888777 88888888888888888888888888888877776633 4
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 004249 174 DTTWAMSCLSEAVKADPND 192 (765)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~ 192 (765)
.+.+++..|++++..+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 5566666766666655543
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.85 E-value=4.5e-08 Score=84.03 Aligned_cols=119 Identities=17% Similarity=0.085 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 004249 105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE----QGDTTWAMS 180 (765)
Q Consensus 105 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 180 (765)
+++++|+..|+++.+.. ++.+. +|.+|...+.+++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 45777777887777665 34444 777777777777788888877765 567777777777777 777777887
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004249 181 CLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMG 233 (765)
Q Consensus 181 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 233 (765)
+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+...+
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l 135 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL 135 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 77777764 567777777777777 77777777777777765 334444443
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.83 E-value=7.5e-09 Score=83.29 Aligned_cols=89 Identities=19% Similarity=0.326 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249 164 LIFPWLIEQGDTTWAMSCLSEAVKADPNDFK-LKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ 242 (765)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 242 (765)
..|.++...|++++|+..|+++++.+|.++. +++.+|.++...|++++|+..|+++++.+|++..++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3455555555555555555555555555555 55555555555555555555555555555555544422 34
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 004249 243 IESSVDILEDYLKGHPTE 260 (765)
Q Consensus 243 ~~~A~~~~~~~~~~~p~~ 260 (765)
+.+++..|+++...+|++
T Consensus 77 ~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHhccCccc
Confidence 445555555555544443
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.78 E-value=2.2e-08 Score=105.16 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh-----CCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCH---
Q 004249 96 GDASLHYALGRYEEAISVLHEVIRLE-----EELP---NSYHILGLVHDALGNTAKAMGCYWLAACY-----KQKDS--- 159 (765)
Q Consensus 96 ~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~--- 159 (765)
..+..+..+|+|++|+.++++++... |+++ .++..+|.+|..+|+|++|+.++++++.+ .|+++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34444555666666666666666542 2222 44555566666666666666666555543 23333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKA-----DPNDF---KLKFHLASLYVELGNFQRAADVYRQMV 220 (765)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al 220 (765)
..+.+||.+|..+|++++|+.+|++++.+ .|+++ +....++.++..++.+++|...|.++.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555543 33333 223445555555555555555555543
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.75 E-value=1.9e-07 Score=91.69 Aligned_cols=70 Identities=7% Similarity=-0.089 Sum_probs=49.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 220 VQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 220 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
+...|.++.++..++..+...|++++|+..+++++.++|+ +..+..+|.++...|++++|++.|.+++.+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3456677777777777777677777777777777777653 335567777777777777777777777777
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=1.7e-07 Score=80.42 Aligned_cols=111 Identities=15% Similarity=0.045 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHH
Q 004249 139 GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAAD 214 (765)
Q Consensus 139 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 214 (765)
+++++|+.+|+++.+..... +. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 46788999999998876333 33 888888888888899999999875 678899999999988 889999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 004249 215 VYRQMVQLCPENIEALKMGAKLYQK----SGQIESSVDILEDYLKGH 257 (765)
Q Consensus 215 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~ 257 (765)
+|+++.+. .++.+.+.+|.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999876 678889999999988 889999999999988764
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.72 E-value=2.5e-07 Score=86.75 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHc---------------------CCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249 108 EEAISVLHEVIRLEEELPNSYHILGLVHDAL---------------------GNTAKAMGCYWLAACYKQKDSSLWKLIF 166 (765)
Q Consensus 108 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---------------------g~~~~A~~~~~~a~~~~p~~~~~~~~la 166 (765)
.-.+.+++-++..+|++.......|..|..- .++..|.+.|.++... -..+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH
Confidence 3456677888889999987666555544321 1233455555554321 1111
Q ss_pred HHHHHcCCHHHHHH-----HHHHH-HhcCCCCHHHHHHHHHHHHH---h--C------CHHHHHHHHHHHHHhCCC--CH
Q 004249 167 PWLIEQGDTTWAMS-----CLSEA-VKADPNDFKLKFHLASLYVE---L--G------NFQRAADVYRQMVQLCPE--NI 227 (765)
Q Consensus 167 ~~~~~~g~~~~A~~-----~~~~a-l~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~ 227 (765)
+......+.+++. -+..+ ...+|+++++++..|.+... . | ....|...++++++++|+ +.
T Consensus 121 -L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G 199 (301)
T 3u64_A 121 -LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG 199 (301)
T ss_dssp -HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred -HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC
Confidence 1111122222221 12222 33467778777777766543 1 2 256788888888888888 56
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Q 004249 228 EALKMGAKLYQKS-----GQIESSVDILEDYLKGHPTE-ADFGVIDLLASMLVQM-NAYDRVLKHIELVDLV 292 (765)
Q Consensus 228 ~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~ 292 (765)
.++..+|.+|... |+.++|..+|+++++++|+. .. .++.+|..++.. |++++|...+++++..
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id--~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD--HHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH--HHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 6888888888884 88888888888888888864 55 566888888774 8888888888888887
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.70 E-value=7.4e-07 Score=83.55 Aligned_cols=109 Identities=10% Similarity=-0.008 Sum_probs=92.2
Q ss_pred cccCCCChHHHHHHHHHHHH---c--cc------cHHHHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHh-----ccHH
Q 004249 328 HWENVSDHAESINEIADLFK---N--RE------LYSTALKYYHMLEANAGVHN--DGCLHLKIAECSLAL-----KERE 389 (765)
Q Consensus 328 ~~~~~~~~~~~~~~la~~~~---~--~g------~~~~A~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~ 389 (765)
+....+.+++.++..|.+.. . .| ....|...+++++++ +|+ +..+|..+|.+|... |+.+
T Consensus 144 l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~e 221 (301)
T 3u64_A 144 LSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGME 221 (301)
T ss_dssp HTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred HHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHH
Confidence 33334777887777775542 1 22 468899999999999 898 677999999999995 9999
Q ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHH-cCCHHHHHHhcCCCCCcccc
Q 004249 390 KSIIYFYKALQILEDN-IDARLTLASLLLE-DAKDEEAISLLTPPMSLENK 438 (765)
Q Consensus 390 ~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~ 438 (765)
+|.++|+++++++|+. ..+++..|..+.. .|++++|..++++++..+|.
T Consensus 222 kA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 222 KAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999975 9999999999988 49999999999999998777
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.63 E-value=9.8e-08 Score=100.25 Aligned_cols=124 Identities=11% Similarity=0.052 Sum_probs=69.8
Q ss_pred HHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCC---HHHHHH
Q 004249 169 LIEQGDTTWAMSCLSEAVKA-----DPNDF---KLKFHLASLYVELGNFQRAADVYRQMVQL-----CPEN---IEALKM 232 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~ 232 (765)
+..+|++++|+..+++++.+ .|+++ .++.++|.+|..+|+|++|+.++++++.+ .|++ ...+.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34555666666666555543 23333 34555666666666666666666665543 2333 234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 233 GAKLYQKSGQIESSVDILEDYLKG-----HPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
+|.+|..+|++++|+.++++++.+ .|+++. ......++.++..++.+++|...|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666543 344433 223446666666777777777777766655
No 211
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.58 E-value=1.5e-06 Score=92.15 Aligned_cols=167 Identities=10% Similarity=0.002 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHhcCCCCcc
Q 004249 230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA---------YDRVLKHIELVDLVYYSGKELL 300 (765)
Q Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~ 300 (765)
+..+...+.+.|++++|+.+|+++.+..- .++...|+.+..++...+. .++|..+|+++... +-..+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv-~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---G~~Pd 104 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGV-QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---KVVPN 104 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT---TCCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh---CCCCC
Confidence 44555666777777777777777765431 1223345555555555443 45666666666544 12234
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004249 301 LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAE 380 (765)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 380 (765)
...+..+...+.+.|++++|..+|+++.......+...|..+...+.+.|+.++|..+|+++...+..| +...|..+-.
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~ 183 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHH
Confidence 445555566666666666666666666544444455666666666666666666666666666554333 4455666666
Q ss_pred HHHHhccHHHHHHHHHHHHHH
Q 004249 381 CSLALKEREKSIIYFYKALQI 401 (765)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~ 401 (765)
++.+.|+.++|.+.++++.+.
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHh
Confidence 666666666666666666554
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.57 E-value=2.4e-06 Score=90.61 Aligned_cols=159 Identities=9% Similarity=-0.045 Sum_probs=75.4
Q ss_pred HHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc---------ccHHHHHHHHHHHHhccCCCCCHHHHHHHH
Q 004249 309 ICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNR---------ELYSTALKYYHMLEANAGVHNDGCLHLKIA 379 (765)
Q Consensus 309 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la 379 (765)
..+.+.|+.++|+.+|+++.......+...|..+..++... +..++|..+|+++...+..| +..+|..+.
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI 112 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEATFTNGA 112 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHHHHHHHH
Confidence 33444445555555444444333333344444444433322 23455555555555443222 344555555
Q ss_pred HHHHHhccHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHH
Q 004249 380 ECSLALKEREKSIIYFYKALQIL-EDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKL 458 (765)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (765)
..+.+.|++++|...|+++.+.. +.+..++..+...|.+.|+.++|.++++++.+....+ +...+..+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-----------d~~ty~~L 181 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-----------EEPELAAL 181 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-----------CHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----------CHHHHHHH
Confidence 55555555555555555554432 2234455555555555555555555555443322111 12444555
Q ss_pred HHHHHhcchhHHHHHhhHHHH
Q 004249 459 CRIYKAKGMIEGFVDMLLPLV 479 (765)
Q Consensus 459 a~~~~~~~~~~~A~~~~~~~~ 479 (765)
...+.+.|+.++|.+.+.++-
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHH
Confidence 555555555555555555544
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.55 E-value=8.4e-07 Score=69.28 Aligned_cols=74 Identities=19% Similarity=0.063 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249 189 DPNDFKLKFHLASLYVELGN---FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262 (765)
Q Consensus 189 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 262 (765)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..++++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 46667777777777765554 577777777777777777777777777777777777777777777777776443
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.54 E-value=6.4e-07 Score=69.95 Aligned_cols=70 Identities=14% Similarity=-0.011 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 004249 156 QKDSSLWKLIFPWLIEQGD---TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE 225 (765)
Q Consensus 156 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 225 (765)
|+++..+..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4455555555555543333 355555555555555555555555555555555555555555555555554
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=1.3e-06 Score=73.67 Aligned_cols=88 Identities=5% Similarity=-0.136 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 110 AISVLHEVIRLEEELPNSYHILGLVHDALG---NTAKAMGCYWLAACYK-Q-KDSSLWKLIFPWLIEQGDTTWAMSCLSE 184 (765)
Q Consensus 110 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 184 (765)
+.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++..++.+++.+ | .+.++++.+|..+++.|+|++|..++++
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 334444444555555566666666666655 4446666666666555 4 3455566666666666666666666666
Q ss_pred HHhcCCCCHHHHH
Q 004249 185 AVKADPNDFKLKF 197 (765)
Q Consensus 185 al~~~p~~~~~~~ 197 (765)
+++.+|++..+..
T Consensus 97 lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 97 LLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHCTTCHHHHH
T ss_pred HHhcCCCCHHHHH
Confidence 6666665555443
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=2.1e-06 Score=72.43 Aligned_cols=93 Identities=17% Similarity=0.082 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhCCHHHHHHH
Q 004249 141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG---DTTWAMSCLSEAVKAD-P-NDFKLKFHLASLYVELGNFQRAADV 215 (765)
Q Consensus 141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 215 (765)
...+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | ...++++.+|..+.+.|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345666677777777777888888888888877 5568888888888877 5 4577888888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHH
Q 004249 216 YRQMVQLCPENIEALKMG 233 (765)
Q Consensus 216 ~~~al~~~p~~~~~~~~l 233 (765)
++++++..|++..+....
T Consensus 94 ~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 888888888877665443
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.26 E-value=2.4e-06 Score=88.11 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=78.1
Q ss_pred hhhhHHHHHHHHHHHHhh-----CCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHH
Q 004249 615 MISHHQDAAREYLEAYKL-----LPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIAR 689 (765)
Q Consensus 615 ~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~ 689 (765)
..|+|++|+..|++++.+ .|++|.+ ..++.|+|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-----------------------------------------a~~~~nLa~ 348 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYM-----------------------------------------LHMMYQAMG 348 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHH-----------------------------------------HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHH-----------------------------------------HHHHHHHHH
Confidence 357899999999998874 3554443 256899999
Q ss_pred HHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 004249 690 AYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF 765 (765)
Q Consensus 690 ~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l~~ 765 (765)
+|..+|++++|+.+|+++|++..+. +| ..-......++|||.+|..+|++++|+.+++|++.|
T Consensus 349 ~y~~~g~~~eA~~~~~~aL~i~~~~-----lG--------~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 349 VCLYMQDWEGALKYGQKIIKPYSKH-----YP--------VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHH-----SC--------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHH-----cC--------CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999999997642 11 122244778999999999999999999999998754
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.23 E-value=8.4e-06 Score=65.57 Aligned_cols=67 Identities=10% Similarity=0.042 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEE-------ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL 161 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 161 (765)
+..|..++..|+|..|+..|+++++..+ ..+.++..+|.+++++|+++.|+..+++++.++|++..+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3444444444444444444444444321 112333444444444444444444444444444444333
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.22 E-value=1.3e-05 Score=64.39 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004249 162 WKLIFPWLIEQGDTTWAMSCLSEAVKAD-------PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG 233 (765)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 233 (765)
++.+|..++..|+|..|+..|+.++... +..+.++..+|.++.++|+++.|+..+++++++.|++..+..++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444444444444444444444444431 12344455555555555555555555555555555555444443
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.19 E-value=6.2e-06 Score=85.06 Aligned_cols=92 Identities=10% Similarity=0.082 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHH
Q 004249 138 LGNTAKAMGCYWLAACY-----KQKDS---SLWKLIFPWLIEQGDTTWAMSCLSEAVKA-----DPNDF---KLKFHLAS 201 (765)
Q Consensus 138 ~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~ 201 (765)
.|+|++|+..+++++++ .|+++ ..+..+|.+|..+|+|++|+.++++++.+ .|+++ ..+.++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666666543 34444 34555666666666666666666666654 33333 34566666
Q ss_pred HHHHhCCHHHHHHHHHHHHHh-----CCCCHHH
Q 004249 202 LYVELGNFQRAADVYRQMVQL-----CPENIEA 229 (765)
Q Consensus 202 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 229 (765)
+|..+|++++|+..|++++++ .|+++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 666777777776666666653 4555443
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.14 E-value=5.3e-06 Score=85.84 Aligned_cols=107 Identities=9% Similarity=-0.026 Sum_probs=81.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHH
Q 004249 133 LVHDALGNTAKAMGCYWLAACY-----KQKDS---SLWKLIFPWLIEQGDTTWAMSCLSEAVKA-----DPNDF---KLK 196 (765)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~ 196 (765)
.-+..+|++++|+..+++++.+ .|+++ ..+..+|.+|..+|+|++|+.++++++.+ .|+++ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455778999999999998865 35555 56777899999999999999999998875 34554 457
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHH
Q 004249 197 FHLASLYVELGNFQRAADVYRQMVQL-----CPENIEA---LKMGAKLYQK 239 (765)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~la~~~~~ 239 (765)
.++|.+|..+|++++|+..|++++++ .|+++.+ +..++.+...
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 88999999999999999999998864 5666543 4556655543
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.96 E-value=2.3e-05 Score=81.04 Aligned_cols=108 Identities=11% Similarity=-0.000 Sum_probs=86.0
Q ss_pred HHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCC---HHHHHH
Q 004249 169 LIEQGDTTWAMSCLSEAVKA-----DPNDF---KLKFHLASLYVELGNFQRAADVYRQMVQL-----CPEN---IEALKM 232 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~ 232 (765)
+..+|++++|+..+++++.+ .|+++ .++.++|.+|..+|+|++|+.++++++.. .|++ ...+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 55789999999999999975 45554 56889999999999999999999999874 3455 456889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCCH-HHHHHHHHHHHHh
Q 004249 233 GAKLYQKSGQIESSVDILEDYLKG-----HPTEADF-GVIDLLASMLVQM 276 (765)
Q Consensus 233 la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~-~~~~~l~~~~~~~ 276 (765)
+|.+|..+|++++|+.++++++++ .|+++.. .++..++.+...+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 5666552 2445677666554
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.90 E-value=0.00013 Score=59.04 Aligned_cols=91 Identities=3% Similarity=-0.158 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHH---HHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249 108 EEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAK---AMGCYWLAACYK-Q-KDSSLWKLIFPWLIEQGDTTWAMSCL 182 (765)
Q Consensus 108 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~ 182 (765)
..+...|.+.+..++.+..+.+.+|+++.+..+... ++..++..+..+ | ...+.++.+|..+++.|+|.+|..++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444555555555556666666666666655544 666666666554 3 23455566666666666666666666
Q ss_pred HHHHhcCCCCHHHHHH
Q 004249 183 SEAVKADPNDFKLKFH 198 (765)
Q Consensus 183 ~~al~~~p~~~~~~~~ 198 (765)
+.+++..|++..+...
T Consensus 98 ~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHCTTCHHHHHH
T ss_pred HHHHHhCCCCHHHHHH
Confidence 6666666666555433
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.86 E-value=0.00017 Score=58.40 Aligned_cols=94 Identities=16% Similarity=0.051 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhCCHHHHHHH
Q 004249 141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW---AMSCLSEAVKAD-P-NDFKLKFHLASLYVELGNFQRAADV 215 (765)
Q Consensus 141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 215 (765)
...+...|.+....++....+.+.+|.++....+... ++.+++..+..+ | ...++++.+|..+++.|+|++|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455666666666677788888888888888777665 888888888766 4 4567888888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHH
Q 004249 216 YRQMVQLCPENIEALKMGA 234 (765)
Q Consensus 216 ~~~al~~~p~~~~~~~~la 234 (765)
++.+++..|++..+.....
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHH
Confidence 8888888888877655443
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.79 E-value=0.00022 Score=60.38 Aligned_cols=133 Identities=16% Similarity=0.073 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---------hHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCCH
Q 004249 92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---------NSYHILGLVHDALGNTAKAMGCYWLAACYK---QKDS 159 (765)
Q Consensus 92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---p~~~ 159 (765)
..++.....++..|.|+.|+-+...++....+++ .++..+|.+++..|+|..|...|+++++.. +...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4567888899999999999999999877654433 378999999999999999999999997653 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004249 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY 237 (765)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 237 (765)
.....++. ...... ... .+.+.++.+.++.|+...|++.+|+..++.+-.. ...+.+...||.+|
T Consensus 101 s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp ---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred Cccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 22111110 000000 011 1345677888888888888888888887664221 23466677777665
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.64 E-value=0.0011 Score=54.76 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=77.0
Q ss_pred hhCCCchHHHHHHHHHHHcCCH------HHHHHHHHHHhccCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 120 LEEELPNSYHILGLVHDALGNT------AKAMGCYWLAACYKQKD--------SSLWKLIFPWLIEQGDTTWAMSCLSEA 185 (765)
Q Consensus 120 ~~p~~~~~~~~l~~~~~~~g~~------~~A~~~~~~a~~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a 185 (765)
..|++++.|..........|+. ++-+..|++++..-|.. ...|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4677888888887777777887 77778888887655432 1334444533 4557788888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249 186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229 (765)
Q Consensus 186 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 229 (765)
+......+.+|...|..-.++|+...|...+.+++...|.....
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 77766667777777887788888888888888888877776553
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.63 E-value=0.00022 Score=60.45 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHH
Q 004249 405 NIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIY 462 (765)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (765)
+.+..+.++.|+.+.|++++|+..++..-..... +++.+.+|++|
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt-------------~kvnm~LakLy 165 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT-------------PKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC-------------HHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC-------------HHHHHHHHHHh
Confidence 3478899999999999999999999876554433 36777777765
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.50 E-value=0.0013 Score=54.25 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249 155 KQKDSSLWKLIFPWLIEQGDT------TWAMSCLSEAVKADPND--------FKLKFHLASLYVELGNFQRAADVYRQMV 220 (765)
Q Consensus 155 ~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al 220 (765)
.|.+++.|..........|+. +.-++.|++++..-|.. ...|...|.. ...++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 455666666555555555555 55555666665544422 1222333322 33355555555555555
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249 221 QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT 259 (765)
Q Consensus 221 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 259 (765)
..+...+.+|...|..-.++|+...|...+.+++...|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 554444555555555555555555555555555555544
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.26 E-value=0.3 Score=52.49 Aligned_cols=365 Identities=9% Similarity=-0.032 Sum_probs=183.9
Q ss_pred HHHHHHHhhCCCchHHHHHHHH---HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004249 113 VLHEVIRLEEELPNSYHILGLV---HDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD 189 (765)
Q Consensus 113 ~~~~~l~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 189 (765)
-+...+...|+.+..-...... +.+.+++..-+.++.. .|.+....+..+......|+..+|.....++....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 3444556677777544333332 3345566655554432 37777777777888888888877777777766554
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH-----------HHHHH-cCCHHHHHHHHHHHHhcC
Q 004249 190 PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA-----------KLYQK-SGQIESSVDILEDYLKGH 257 (765)
Q Consensus 190 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-----------~~~~~-~g~~~~A~~~~~~~~~~~ 257 (765)
...+.....+...+...|........-+--+.+..++......++ ..... ..+.......... ..
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~---~~ 209 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART---TG 209 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH---SC
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc---cC
Confidence 444444444444444333322221111111111111111111111 11110 1111111111110 11
Q ss_pred CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH
Q 004249 258 PTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE 337 (765)
Q Consensus 258 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 337 (765)
+... ......++.......+.+.|...+........-+..........++......+...++...+....... .+ ..
T Consensus 210 ~~~~-~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 286 (618)
T 1qsa_A 210 ATDF-TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QS-TS 286 (618)
T ss_dssp CCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CC-HH
T ss_pred CChh-hHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-CC-hH
Confidence 1111 111223444445556888899888877654211111112222233333334443556677776654332 22 22
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004249 338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLL 417 (765)
Q Consensus 338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 417 (765)
.....+...+..|+++.|..+|..+... ....+...+.+|.++...|+.++|...|+++.. +.+. +-.++. .
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~f--Yg~lAa--~ 358 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRGF--YPMVAA--Q 358 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSH--HHHHHH--H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCh--HHHHHH--H
Confidence 3334444455679999999999876554 345678889999999999999999999999875 3322 222222 2
Q ss_pred HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHH
Q 004249 418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLL 497 (765)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~ 497 (765)
++|.. ....+....+... ... ........+..+...|....|...+...+.. .+ ...
T Consensus 359 ~Lg~~----------~~~~~~~~~~~~~-~~~-~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~--------~~---~~~ 415 (618)
T 1qsa_A 359 RIGEE----------YELKIDKAPQNVD-SAL-TQGPEMARVRELMYWNLDNTARSEWANLVKS--------KS---KTE 415 (618)
T ss_dssp HTTCC----------CCCCCCCCCSCCC-CHH-HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CC---HHH
T ss_pred HcCCC----------CCCCCCCCChhHH-hhh-ccChHHHHHHHHHHCCChhhHHHHHHHHHhc--------CC---HHH
Confidence 33421 1111100000000 000 1112346677788899999988777666532 11 233
Q ss_pred HHHHHHHHHhhhcHHHHHHHH
Q 004249 498 IIDLCKTLASLHRYEDAIKII 518 (765)
Q Consensus 498 ~~~l~~~~~~~~~~~~A~~~~ 518 (765)
...++.+....|.++.++...
T Consensus 416 ~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 416 QAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHH
Confidence 345666677788887776544
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.12 E-value=0.52 Score=52.57 Aligned_cols=189 Identities=11% Similarity=0.046 Sum_probs=103.8
Q ss_pred HHhcCChhHHHHHHHhhcccC--CCC--hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC--C---CH----HHHHH
Q 004249 311 HIQLGNTDKAEILLTAIHWEN--VSD--HAESINEIADLFKNRELYSTALKYYHMLEANAGVH--N---DG----CLHLK 377 (765)
Q Consensus 311 ~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~----~~~~~ 377 (765)
.+..|+.++++..+...+... ... ...+.+.+|.++...++ +++.++...+... .. . .. .+-..
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~-~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVEN-SGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHH-SSCCSCHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCc-cccccccccHHHHHHHHHH
Confidence 456788889999999877521 011 23466777777766654 6888887777542 10 0 11 24456
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHH
Q 004249 378 IAECSLALKEREKSIIYFYKALQILEDNI--DARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIK 455 (765)
Q Consensus 378 la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (765)
+|.++...++ +++...+..++..+.... .+-+.+|.++.-.|+.+-...++..+.+...+. ..-.
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~------------vrR~ 527 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN------------ITRG 527 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH------------HHHH
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH------------HHHH
Confidence 6666665554 466777777776432211 344567788888888766666665444322111 1112
Q ss_pred HHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh-HHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 004249 456 IKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE-HRLLIIDLCKTLASLHRYEDAIKIINLILK 523 (765)
Q Consensus 456 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 523 (765)
..+|..+...|+.+.+-..+ +.+... .+|. ...+.+.+|..|...|+...-..++..+..
T Consensus 528 aalgLGll~~g~~e~~~~li-~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 528 LAVGLALINYGRQELADDLI-TKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHTTTCGGGGHHHH-HHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhCCChHHHHHHH-HHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 23333333455554433333 333221 2222 233445667777788887555556666654
No 231
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.98 E-value=0.012 Score=59.08 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=89.6
Q ss_pred hhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249 447 AWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGY 526 (765)
Q Consensus 447 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 526 (765)
.+|....+-..+|.+|...|++.+|...+.++..+...++ ....-.+++..-..++...+++.++...+.++.....
T Consensus 94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d---d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD---DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS---CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 3455555666999999999999999999998887653311 1234466777777889999999999999999987664
Q ss_pred C--CCCchHHHHHHHHhhccc-ccCChhhHHHHHHHHHHhCC
Q 004249 527 G--KFPVEKEELYFLGAQIPC-NTTDPKLWFDGVRFMVKLHP 565 (765)
Q Consensus 527 ~--~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p 565 (765)
. ..|.....+...+|.++. ..++|..|...|-.++..+.
T Consensus 171 ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 171 AIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 3 224446778888887888 89999999999999986554
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.92 E-value=0.021 Score=46.89 Aligned_cols=76 Identities=5% Similarity=-0.148 Sum_probs=50.4
Q ss_pred CCchHHHHHHHHHHHcCCHH---HHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 004249 123 ELPNSYHILGLVHDALGNTA---KAMGCYWLAACYKQK-DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFH 198 (765)
Q Consensus 123 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (765)
.++.+.+.+|+++....+.. +++..++..+...|. ..+.++.+|..++++|+|.+|..+.+.+++..|++..+...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 44567777777777666443 566777777666664 34666667777777777777777777777777777655443
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.92 E-value=0.0061 Score=49.38 Aligned_cols=69 Identities=10% Similarity=-0.040 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCH---HHHHHHHHHHHHhhCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 004249 94 MLGDASLHYALGRY---EEAISVLHEVIRLEEE-LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW 162 (765)
Q Consensus 94 ~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 162 (765)
.|..|.++....+. .+++.+++.+++.+|. .-+.++.+|..++++|+|++|..+.+.+++..|++..+.
T Consensus 43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 34444444444332 2455555555554442 234555555555555555555555555555555555443
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.82 E-value=0.74 Score=49.45 Aligned_cols=409 Identities=11% Similarity=0.038 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCHHHHHHHH--
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG--NTAKAMGCYWLAACYKQKDSSLWKLIF-- 166 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la-- 166 (765)
-...+..|...+..|++..+..+...+ ...|- ..+......-...+ ... .+...+...|+.+..-....
T Consensus 6 ~~~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL--~~yl~y~~l~~~l~~~~~~----ev~~Fl~~~~~~p~~~~Lr~~~ 78 (618)
T 1qsa_A 6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPL--YPYLEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSRF 78 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTT--HHHHHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCc--HHHHHHHHHHhCcccCCHH----HHHHHHHHCCCChhHHHHHHHH
Confidence 345677888899999998777765432 22332 23322222222222 333 33444555777775543322
Q ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249 167 -PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIES 245 (765)
Q Consensus 167 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 245 (765)
..+.+.+++..-+.++.. .|.+..............|+..+|......+.......+.....+...+...|....
T Consensus 79 l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCH
Confidence 234456777766665543 378888888888899999999888888887776554444444444444444444332
Q ss_pred HH--HHHHHHHhcC------------CCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004249 246 SV--DILEDYLKGH------------PTEADFGVIDLLASMLVQM-NAYDRVLKHIELVDLVYYSGKELLLALKIKAGIC 310 (765)
Q Consensus 246 A~--~~~~~~~~~~------------p~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (765)
.. .-+..++... |... ..++..+... .+...+.... ...+ ...........+..
T Consensus 155 ~~~~~R~~~al~~~~~~~a~~l~~~l~~~~-----~~~a~~~~al~~~p~~~~~~~----~~~~--~~~~~~~~~~~~~~ 223 (618)
T 1qsa_A 155 LAYLERIRLAMKAGNTGLVTVLAGQMPADY-----QTIASAIISLANNPNTVLTFA----RTTG--ATDFTRQMAAVAFA 223 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCGGG-----HHHHHHHHHHHHCGGGHHHHH----HHSC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCHHH-----HHHHHHHHHHHhChHhHHHHH----hccC--CChhhHHHHHHHHH
Confidence 21 1122222111 1110 0111111111 1111111111 1000 01111122333444
Q ss_pred HHhcCChhHHHHHHHhhcccCCCChHH---HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcc
Q 004249 311 HIQLGNTDKAEILLTAIHWENVSDHAE---SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKE 387 (765)
Q Consensus 311 ~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 387 (765)
.....+.+.|...+........-+... ....++..+...+...++...+.+.... .. +......++......|+
T Consensus 224 rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 224 SVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQ-STSLIERRVRMALGTGD 300 (618)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CC-CHHHHHHHHHHHHHHTC
T ss_pred HHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CC-ChHHHHHHHHHHHHCCC
Confidence 455568888888887764322122222 3333444445555456777777765543 33 33334444445567799
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcch
Q 004249 388 REKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM 467 (765)
Q Consensus 388 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 467 (765)
+..|..+|..+-...+......+.+|+.+...|+.++|..+|+++... .+ .|-.++. ...|.
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--~~--------------fYg~lAa--~~Lg~ 362 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ--RG--------------FYPMVAA--QRIGE 362 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CS--------------HHHHHHH--HHTTC
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CC--------------hHHHHHH--HHcCC
Confidence 999999988766544456778889999999999999999988877652 22 0111111 11121
Q ss_pred hHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhccccc
Q 004249 468 IEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNT 547 (765)
Q Consensus 468 ~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (765)
.-. + ....+.......-........+..+...|....|...+..+.... + +.....++. +....
T Consensus 363 ~~~----~-----~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~----~--~~~~~~la~-~a~~~ 426 (618)
T 1qsa_A 363 EYE----L-----KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK----S--KTEQAQLAR-YAFNN 426 (618)
T ss_dssp CCC----C-----CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C--HHHHHHHHH-HHHHT
T ss_pred CCC----C-----CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC----C--HHHHHHHHH-HHHHC
Confidence 000 0 000000000000011123455677888999999999888777533 2 222333333 56677
Q ss_pred CChhhHHHHHH
Q 004249 548 TDPKLWFDGVR 558 (765)
Q Consensus 548 g~~~~A~~~~~ 558 (765)
|.+..++....
T Consensus 427 ~~~~~~v~~~~ 437 (618)
T 1qsa_A 427 QWWDLSVQATI 437 (618)
T ss_dssp TCHHHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 88887775554
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.81 E-value=0.029 Score=46.12 Aligned_cols=77 Identities=13% Similarity=0.040 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249 156 QKDSSLWKLIFPWLIEQGDT---TWAMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231 (765)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 231 (765)
.-.+.+.+.+|.++....+. .+++.+++..+...| ...+.++.+|..+++.|+|++|..+.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34667777777777776654 357777777777666 34567777777777777777777777777777777766544
Q ss_pred H
Q 004249 232 M 232 (765)
Q Consensus 232 ~ 232 (765)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.79 E-value=0.02 Score=46.41 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 004249 158 DSSLWKLIFPWLIEQGDT---TWAMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEAL 230 (765)
Q Consensus 158 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 230 (765)
.+.+.+.+|.++.+..+. .+++.+++..+..+| ...+.++.+|..+.+.|+|++|..+.+.+++..|++..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 334445555555444432 234555555554444 2244555555555555555555555555555555554443
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.24 Score=51.18 Aligned_cols=204 Identities=10% Similarity=0.056 Sum_probs=123.6
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLE------EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL 161 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 161 (765)
++++...+..+..+. .|++++|++.+...-+.. +....+...+..++...|+++...+.+.-..........+
T Consensus 14 s~~~~~~~~~~~~l~-~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a 92 (445)
T 4b4t_P 14 SQILKEEFPKIDSLA-QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS 92 (445)
T ss_dssp --------------C-HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH
T ss_pred HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH
Confidence 445555666665553 478999999886655442 2345678888889999999999888877666555444443
Q ss_pred HHHHHHHH---H-HcCCHHH--HHHHHHHHHhcCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CC-C
Q 004249 162 WKLIFPWL---I-EQGDTTW--AMSCLSEAVKADPN-------DFKLKFHLASLYVELGNFQRAADVYRQMVQLC-PE-N 226 (765)
Q Consensus 162 ~~~la~~~---~-~~g~~~~--A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~-~ 226 (765)
-..+.... . .....+. -+...+.......+ .......|+.++...|++.+|...+.....-. .. +
T Consensus 93 i~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~ 172 (445)
T 4b4t_P 93 IQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME 172 (445)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc
Confidence 33332221 1 1222221 11111111111111 23456788999999999999999998875422 11 1
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 227 ----IEALKMGAKLYQKSGQIESSVDILEDYLK---GHPTEAD--FGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 227 ----~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
.+.+.....+|...+++.+|...+.++.. ..+..+. ...+...|.++...++|.+|-.+|..+...
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 46777888999999999999999988642 1222222 334567888888999999999999888776
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.55 E-value=0.27 Score=55.93 Aligned_cols=122 Identities=19% Similarity=0.086 Sum_probs=77.9
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 004249 99 SLHYALGRYEEAIS-VLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW 177 (765)
Q Consensus 99 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 177 (765)
......+++++|.. ++.. -| +......+...+...|.+++|++..+ ++...+ ......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHH
Confidence 34567899999877 4411 01 01222566677788888888886552 232222 34567889999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249 178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI 249 (765)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 249 (765)
|.+..+. .++...|..+|..+...|+++.|+.+|.++- + +..+..++...|+.+.....
T Consensus 671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~-----d---~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAH-----D---LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----C---HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-----C---hhhhHHHHHHcCCHHHHHHH
Confidence 8887543 3567888999999999999999999988762 2 22334444445555544333
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.37 E-value=0.26 Score=49.33 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHhhcccCC-----CChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCC-CCCH----HH
Q 004249 305 IKAGICHIQLGNTDKAEILLTAIHWENV-----SDHAESINEIADLFKNRELYSTALKYYHMLEANAGV-HNDG----CL 374 (765)
Q Consensus 305 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~ 374 (765)
..+|..|+..|++.+|.+.+.++..... ..-.+++.....+|...+++.++...+.++...... +.+| ..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 3667777777777777777666553221 122345556667777777777777777776544211 1222 23
Q ss_pred HHHHHHHHH-HhccHHHHHHHHHHHHHHc
Q 004249 375 HLKIAECSL-ALKEREKSIIYFYKALQIL 402 (765)
Q Consensus 375 ~~~la~~~~-~~g~~~~A~~~~~~al~~~ 402 (765)
...-|..+. ..++|..|...|-++++..
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 344566667 6777777777777766443
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.29 E-value=0.12 Score=58.79 Aligned_cols=76 Identities=16% Similarity=-0.009 Sum_probs=42.5
Q ss_pred HccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHH
Q 004249 347 KNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ--------ILEDNIDARLTLASLLLE 418 (765)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~ 418 (765)
...|++++|.++.+ ..+++..|..+|..+...|+++.|..+|.++-. ....+.+....++.+...
T Consensus 663 l~~~~~~~A~~~~~-------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 663 LKVGQLTLARDLLT-------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHTCHHHHHHHHT-------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH-------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666542 234556666677777777777777666666421 113344444455555555
Q ss_pred cCCHHHHHHhc
Q 004249 419 DAKDEEAISLL 429 (765)
Q Consensus 419 ~g~~~~A~~~~ 429 (765)
.|++..|...+
T Consensus 736 ~~~~~~A~~~~ 746 (814)
T 3mkq_A 736 TGKFNLAFNAY 746 (814)
T ss_dssp TTCHHHHHHHH
T ss_pred cCchHHHHHHH
Confidence 55555555444
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.44 Score=49.18 Aligned_cols=110 Identities=21% Similarity=0.190 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhc-cC-C
Q 004249 451 NIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLG-YG-K 528 (765)
Q Consensus 451 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~-~ 528 (765)
..++...++.++...|++.+|.+.+..+..+..+ ......-.+.+.....++...+++..|..+++++.... .. .
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYG---SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 3567789999999999999999999998876543 22344567788888999999999999999999986422 11 2
Q ss_pred CCchHHHHHHHHhhcccccCChhhHHHHHHHHHHh
Q 004249 529 FPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKL 563 (765)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 563 (765)
.|.-...++..++.++...++|.+|..+|..++..
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 23335567777887888999999999999999864
No 242
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.12 E-value=0.023 Score=63.25 Aligned_cols=111 Identities=13% Similarity=-0.013 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHH
Q 004249 227 IEALKMGAKLYQKSGQIESSVDILEDYLKG--HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK 304 (765)
Q Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 304 (765)
...+..+...|++.|+.++|..+|..+.+. ..-.++...|+.+...|++.|+.++|.++|+++... +-..+...+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---G~~PDvvTY 203 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA---GLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCCCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCcHHHH
Confidence 456788889999999999999999876543 123455558899999999999999999999999776 234456667
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHhhcccCCCChHHHHH
Q 004249 305 IKAGICHIQLGNT-DKAEILLTAIHWENVSDHAESIN 340 (765)
Q Consensus 305 ~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~ 340 (765)
..+..++.+.|+. ++|.++|+++.......+...+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 7777788888875 67889999987766555554443
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.02 E-value=0.55 Score=52.36 Aligned_cols=254 Identities=11% Similarity=0.002 Sum_probs=131.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhh-CCC----chHHHHHHHHHHHcCCHHHHHHHHHHHhccCC---C---CH----HHHHHH
Q 004249 101 HYALGRYEEAISVLHEVIRLE-EEL----PNSYHILGLVHDALGNTAKAMGCYWLAACYKQ---K---DS----SLWKLI 165 (765)
Q Consensus 101 ~~~~g~~~~A~~~~~~~l~~~-p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p---~---~~----~~~~~l 165 (765)
....|+.++++..+.+.+... .++ ..+.+.+|.++...+ .+++..+...+..+. . .. .+-..|
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 445677777777777665421 112 245555666555444 467777776665332 0 11 234456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249 166 FPWLIEQGDTTWAMSCLSEAVKADPND--FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI 243 (765)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 243 (765)
|.++...++ +++...+..++..+... ..+-+.+|.++...|+-+.....+..+.+...+...-...+|..+...|+.
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 666665554 45666666666533211 134456777777778776666666655543322222223344444566777
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 004249 244 ESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEIL 323 (765)
Q Consensus 244 ~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 323 (765)
+.+-.+.+.+...........+...+|..|...|+......++..+... ..........++......|+.+.+...
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7666666655443221122223345666777788865444466665543 222222233344445556776655665
Q ss_pred HHhhcccCCCChHHHHHHHHHHH--Hcccc-HHHHHHHHHHHHh
Q 004249 324 LTAIHWENVSDHAESINEIADLF--KNREL-YSTALKYYHMLEA 364 (765)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~la~~~--~~~g~-~~~A~~~~~~~~~ 364 (765)
+..+... .++.+....+.++ ...|+ ..+++..+.++..
T Consensus 617 v~~L~~~---~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKS---HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGC---SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhc---CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 5544332 2244333333222 22222 2677777777753
No 244
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.93 E-value=0.63 Score=39.11 Aligned_cols=161 Identities=14% Similarity=0.023 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhc--c---------------CCC
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAAC--Y---------------KQK 157 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~---------------~p~ 157 (765)
+..+..++-.|.|..++-.+.. -+...+.+.-+.||...+++..|+..++..+. . +|.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 3345778889999998877643 24567788889999999999999999999883 2 344
Q ss_pred CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-----------HHHH------HhCCHHHHH------
Q 004249 158 DSSL-WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA-----------SLYV------ELGNFQRAA------ 213 (765)
Q Consensus 158 ~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-----------~~~~------~~g~~~~A~------ 213 (765)
+.+. +..+|.++...|+.++|+.++.......|-.+.+-..+- .+.. +...+....
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~ 191 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESL 191 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhc
Confidence 4444 445899999999999999999988877664332211100 0000 000011111
Q ss_pred --HHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249 214 --DVYRQMVQLCPENIE-ALKMGAKLYQKSGQIESSVDILEDYLKGHPTE 260 (765)
Q Consensus 214 --~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 260 (765)
...++-...-|.-.. .....+..|+..|-.++...+|...-+.+|..
T Consensus 192 s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 192 SPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp CHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred cHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 222333334455433 23456788899999999999999999988863
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.46 Score=41.08 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=24.1
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLA 151 (765)
Q Consensus 102 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 151 (765)
+..|+++.|.++.++. ++...|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4555555555554433 34455555555555555555555555544
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.45 Score=41.15 Aligned_cols=109 Identities=16% Similarity=0.111 Sum_probs=80.0
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY 203 (765)
Q Consensus 124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 203 (765)
+++..+.++ ...|+++.|.+..+.. ++...|..||......|+++-|..+|.++- +. -.+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~---~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----SF---DKLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----CH---HHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----CH---HHHHHHH
Confidence 445555544 5789999999998765 678899999999999999999999999863 33 2455566
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 204 VELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY 253 (765)
Q Consensus 204 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 253 (765)
...|+.+.-...-+.+..... +.....+++..|+++++++.|.+.
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 677887776665555544332 223345677889999999998765
No 247
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.54 E-value=0.92 Score=38.14 Aligned_cols=187 Identities=16% Similarity=0.103 Sum_probs=122.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 004249 97 DASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT 176 (765)
Q Consensus 97 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 176 (765)
.....++-.+|+.++-+-.- +.|..++....++..++-.|.+..++-.+.. -+...+.+.-+.||....++.
T Consensus 8 kI~Ks~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYk 79 (242)
T 3kae_A 8 KICKSIRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYK 79 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHH
Confidence 33445677888887654332 3455557777889999999999999887754 255677778889999999999
Q ss_pred HHHHHHHHHHhc-----------------CCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---
Q 004249 177 WAMSCLSEAVKA-----------------DPNDFK-LKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK--- 235 (765)
Q Consensus 177 ~A~~~~~~al~~-----------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--- 235 (765)
.|+.+++..+.- +|.+.+ .+..+|.++.+.|+-++|+.++.......|-.+.+-..+-.
T Consensus 80 kA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~v 159 (242)
T 3kae_A 80 KAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKV 159 (242)
T ss_dssp HHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCC
Confidence 999999999832 334444 45678999999999999999999998887654332211100
Q ss_pred --------HHHH------cCCHHHHHH--------HHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 236 --------LYQK------SGQIESSVD--------ILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 236 --------~~~~------~g~~~~A~~--------~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
+... ...+..... ..++....-|.-.. ......+..++..|-.++...+|......
T Consensus 160 p~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGS-Y~va~aa~~yf~lg~~d~s~~lf~~lR~k 237 (242)
T 3kae_A 160 PQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGS-YFISNAARRYFNLGMNDKSKACFELVRRK 237 (242)
T ss_dssp CCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchh-HHHHHHHHHHHhcccchhHHHHHHHHHhc
Confidence 0000 000111111 22222223343222 23347788899999999999999988877
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.068 Score=58.43 Aligned_cols=111 Identities=12% Similarity=0.161 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHHHHHH--Hc-CCHHHHHHHHHHHhc--------cCCCCH----------HHHHHH
Q 004249 107 YEEAISVLHEVIRLEEELPNSYHILGLVHD--AL-GNTAKAMGCYWLAAC--------YKQKDS----------SLWKLI 165 (765)
Q Consensus 107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~--~~-g~~~~A~~~~~~a~~--------~~p~~~----------~~~~~l 165 (765)
++.|+.++++....+|.... ++..+.+.. .. .+--+|+..+.+.++ ..+.+. ..+..-
T Consensus 265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 57788888887777765432 222222221 11 123345555555442 122221 123333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004249 166 FPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQ 218 (765)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 218 (765)
+..+...|+++-|+.+.++++...|.....|..|+.+|..+|+|+.|+-.+..
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 45555666666666666666666666666666666666666666666655443
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.055 Score=59.12 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=81.3
Q ss_pred cCC-HHHHHHHHHHHhccCCCCHHHHHHHHHHH--HHc-CCHHHHHHHHHHHHhc--------CCCC----------HHH
Q 004249 138 LGN-TAKAMGCYWLAACYKQKDSSLWKLIFPWL--IEQ-GDTTWAMSCLSEAVKA--------DPND----------FKL 195 (765)
Q Consensus 138 ~g~-~~~A~~~~~~a~~~~p~~~~~~~~la~~~--~~~-g~~~~A~~~~~~al~~--------~p~~----------~~~ 195 (765)
.|+ ++.|+..+++....+|.....+. .+.+. ... .+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 445 57899999999888886654332 22221 122 2334577777776632 2222 234
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249 196 KFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY 253 (765)
Q Consensus 196 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 253 (765)
+...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5566777788899999999999999999999999999999999999999998877665
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.16 E-value=0.28 Score=45.46 Aligned_cols=121 Identities=10% Similarity=0.003 Sum_probs=70.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249 99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA 178 (765)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 178 (765)
..+++.|+.++|+......++.+|.+......+...++-.|+++.|.+.++.+.+++|.....-..+-.+ -.|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHH
Confidence 3456677777888888777777887777777777777777888888887777777777654322111100 011
Q ss_pred HHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249 179 MSCLSEAVKA-----DPND---FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 179 ~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 226 (765)
...=.+++.- .+.. ......-+......|+.++|...-.++++..|..
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111111211 1111 1223334444555677777777777777665543
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.02 E-value=0.27 Score=49.77 Aligned_cols=118 Identities=15% Similarity=-0.001 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHH-HHHHHHHhccCCCCHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKA-MGCYWLAACYKQKDSSLWKLIFPWL 169 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~p~~~~~~~~la~~~ 169 (765)
+..+...|......|+.+.|...+.+++......+-. ... ...+-.+ ...++.. ...+...++..+
T Consensus 115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~ 181 (388)
T 2ff4_A 115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTAKAEAE 181 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 3445666766777899999999999999875332110 000 0111111 1111111 123455677788
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004249 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ 221 (765)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 221 (765)
...|++.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++.+
T Consensus 182 l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 182 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999999999999999888999999999999999999988888754
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.90 E-value=0.18 Score=56.38 Aligned_cols=105 Identities=7% Similarity=-0.064 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHH
Q 004249 265 VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIAD 344 (765)
Q Consensus 265 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 344 (765)
.++.+...|++.|+.++|..+|..+..........+...+..+...+++.|+.++|.++|+++.......+...|..+..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 46677778888888888888877654331111234556677777777777777777777777766665666777777777
Q ss_pred HHHcccc-HHHHHHHHHHHHhccCCC
Q 004249 345 LFKNREL-YSTALKYYHMLEANAGVH 369 (765)
Q Consensus 345 ~~~~~g~-~~~A~~~~~~~~~~~~~~ 369 (765)
.+.+.|+ .++|..+|+++...+..|
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~P 234 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKL 234 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCS
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCC
Confidence 7777776 466777777777665444
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.72 E-value=0.27 Score=45.57 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=84.2
Q ss_pred HHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHH
Q 004249 381 CSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCR 460 (765)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (765)
-..+.|+.++|+......++.+|.+.+.+..+..+++-.|+++.|.+.++.+.+.+|.. . ..+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~------------~----~~a~ 69 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY------------L----PGAS 69 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG------------H----HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh------------h----HHHH
Confidence 34567888888888888888889988888888888888899999988888888877775 0 1111
Q ss_pred HHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC
Q 004249 461 IYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG 527 (765)
Q Consensus 461 ~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 527 (765)
.|...=+-+ ..+..+-.......++..|..+.....-+......|+.++|...-..+++..|.
T Consensus 70 ~yr~lI~aE----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 70 QLRHLVKAA----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHHHHH----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHH----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 111000000 111111111122344455555666666667777789999999999999887643
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.67 E-value=0.9 Score=45.92 Aligned_cols=111 Identities=16% Similarity=0.044 Sum_probs=62.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249 167 PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA-ADVYRQMVQLCPENIEALKMGAKLYQKSGQIES 245 (765)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 245 (765)
......|+...|...+.+++.+....+-. ... ...+-.+ ...++... ..+...++..+...|++.+
T Consensus 123 ~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 123 VHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHH
Confidence 33445688888888888888874322100 000 0111111 11111110 1234455666667777777
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 246 SVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 246 A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
++..+..++..+|-+.. ++..+..++...|+..+|+..|+++...
T Consensus 190 a~~~l~~~~~~~P~~E~--~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 190 VIAELEALTFEHPYREP--LWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHSTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777776655 5567777777777777777777776655
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.28 E-value=2.8 Score=49.26 Aligned_cols=59 Identities=12% Similarity=-0.008 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-I----EALKMGAKLYQKSGQIESSVDILED 252 (765)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~la~~~~~~g~~~~A~~~~~~ 252 (765)
..|..+..++.+.|.++.+++..+.+++..+.+ . ..|..+-..+...|+|++|...+..
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 344555555556666666666666665544322 1 1344455555566666666555533
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.02 E-value=1 Score=46.42 Aligned_cols=138 Identities=15% Similarity=0.189 Sum_probs=56.8
Q ss_pred CcHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----------hhCCCchHHHHHHHHHHHcCCHHHHH--------
Q 004249 87 VCPEIRRML--GDASLHYALGRYEEAISVLHEVIR-----------LEEELPNSYHILGLVHDALGNTAKAM-------- 145 (765)
Q Consensus 87 ~~~~~~~~~--~~a~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~-------- 145 (765)
..|++..++ ..-..++..+++++|..+-...+. .++-.+.+|+..+.++...|+.....
T Consensus 130 ~~pE~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ 209 (523)
T 4b4t_S 130 VTAEINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNII 209 (523)
T ss_dssp -------------------------------------------------------------------------CHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhh
Confidence 345555443 223446678899999888776541 13344577888888888888765532
Q ss_pred --HHHHHHh-----ccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhCCHH
Q 004249 146 --GCYWLAA-----CYKQK-DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND-------FKLKFHLASLYVELGNFQ 210 (765)
Q Consensus 146 --~~~~~a~-----~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~ 210 (765)
..+..++ ..++. ....+..+-+.|...+.+++|..+..++. .|.. ...++.+|.++.-+++|.
T Consensus 210 ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~ 287 (523)
T 4b4t_S 210 LRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYS 287 (523)
T ss_dssp HHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHH
Confidence 1222221 22332 23566778889999999999999999885 3432 345677899999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 004249 211 RAADVYRQMVQLCPEN 226 (765)
Q Consensus 211 ~A~~~~~~al~~~p~~ 226 (765)
+|.+++..++...|.+
T Consensus 288 eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 288 TANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9999999999888765
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.42 E-value=0.79 Score=47.10 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
++..+|..|...|++++|.+.|.++......... ...+.....++...+++..+...+.++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4555666666666666666666655544332221 334445555666666666666666666554
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.00 E-value=0.83 Score=46.92 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH----H
Q 004249 192 DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN---IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF----G 264 (765)
Q Consensus 192 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~ 264 (765)
-..++..+|..|...|+++.|.+.|.++....... .+.+.....++...+++..+...+.++.........+ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 34567888888888899988888888887654332 5677888888888899999888888876553333221 1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 265 VIDLLASMLVQMNAYDRVLKHIELVDLV 292 (765)
Q Consensus 265 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 292 (765)
.....|.++...++|.+|...|-.+...
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2224455666778888888888777655
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.91 E-value=15 Score=43.21 Aligned_cols=199 Identities=12% Similarity=0.055 Sum_probs=123.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-----------------
Q 004249 197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGH-P----------------- 258 (765)
Q Consensus 197 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p----------------- 258 (765)
..+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++...- .
T Consensus 816 ~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345556677777766654 445677888888999999999999999999998863211 1
Q ss_pred ---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 004249 259 ---TEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKEL-LLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD 334 (765)
Q Consensus 259 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 334 (765)
.......|..+..++.+.+.++.+++..+.+++....+++. ....+..+-..++..|+|++|...+...-.. ..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--~~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--PL 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--SS
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--HH
Confidence 11112345677888899999999999999999874433322 2336777788899999999998888665321 22
Q ss_pred hHHHHHHHHHHHHcccc------------HHHHHHHHHH-HHhccCCCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Q 004249 335 HAESINEIADLFKNREL------------YSTALKYYHM-LEANAGVHNDGCLHLKIAECSLALKEREKSI-IYFYKALQ 400 (765)
Q Consensus 335 ~~~~~~~la~~~~~~g~------------~~~A~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 400 (765)
..+.+..+...++..|. .++...++.. +.........+..|..|-..+...|++..|. ..|+.+.+
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 23444444444444433 3333333321 1111001112334444555566677765544 56677665
Q ss_pred H
Q 004249 401 I 401 (765)
Q Consensus 401 ~ 401 (765)
+
T Consensus 1050 L 1050 (1139)
T 4fhn_B 1050 Y 1050 (1139)
T ss_dssp H
T ss_pred h
Confidence 5
No 260
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.56 E-value=0.87 Score=47.33 Aligned_cols=80 Identities=16% Similarity=-0.029 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS 240 (765)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 240 (765)
.+..||.+......+..|..+|.+|..+.|.+...+..+|.+....|+.-+|+-+|.+++......+.+..++..++.+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 56778999888889999999999999999999999999999999999999999999999887777788888888877654
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.76 E-value=1.2 Score=45.80 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=64.2
Q ss_pred HHHcCCHHHHHHHHHHHHh---c--------CCCCHHHHHHHHHHHHHhCCHHHHH----------HHHHHHHHh-----
Q 004249 169 LIEQGDTTWAMSCLSEAVK---A--------DPNDFKLKFHLASLYVELGNFQRAA----------DVYRQMVQL----- 222 (765)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~----- 222 (765)
++..+++++|..+-...+. + ++-...+|+..+.++...|+..... ..+-.+++.
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 5567788888877765541 1 3334566777777777777665432 222222221
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Q 004249 223 CPEN-IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE-AD----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG 296 (765)
Q Consensus 223 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 296 (765)
++.. ...+..+-+.|...+.+++|..+..+.. .|.. .. .+.++.+|.++.-.++|.+|.+.+..++...+++
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 2211 4567788889999999999999998874 4543 11 4456678999999999999999999988774432
Q ss_pred CCcc---HHHHHHHHHHHHhcCChh
Q 004249 297 KELL---LALKIKAGICHIQLGNTD 318 (765)
Q Consensus 297 ~~~~---~~~~~~l~~~~~~~~~~~ 318 (765)
.... ..++-.+..+-+-+|+..
T Consensus 304 ~~a~gfr~~a~K~lI~V~LLlG~iP 328 (523)
T 4b4t_S 304 SKSLGFLQQSNKLHCCIQLLMGDIP 328 (523)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhhhhHHHHHHHHHHhHHhhcCCCC
Confidence 2221 223323344444456654
No 262
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.68 E-value=1.3 Score=46.05 Aligned_cols=81 Identities=17% Similarity=0.099 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249 194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML 273 (765)
Q Consensus 194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 273 (765)
..+..+|++......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++......+. +..++..++
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~--a~~nL~~~f 230 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA--ASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH--HHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh--HHHHHHHHH
Confidence 367889999999999999999999999999999999999999999999999999999999876544433 566777777
Q ss_pred HHh
Q 004249 274 VQM 276 (765)
Q Consensus 274 ~~~ 276 (765)
...
T Consensus 231 ~~~ 233 (497)
T 1ya0_A 231 SKA 233 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 263
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.09 E-value=1.2e-05 Score=80.20 Aligned_cols=234 Identities=12% Similarity=0.066 Sum_probs=119.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249 157 KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL 236 (765)
Q Consensus 157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 236 (765)
+.+.+|..+|.++...++..+|++.|-++ +++..+.....+..+.|.+++-+.+++.+-+. -..+.+-..|..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 34556777777777777777776666432 33334444555555666666666666655443 2233334455556
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC
Q 004249 237 YQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGN 316 (765)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (765)
|.+.++..+-.+. + ..|+... ....|.-++..|.|+.|.-+|..+- -+..++.++..+|+
T Consensus 126 yAk~~rL~elEef----l-~~~N~A~---iq~VGDrcf~e~lYeAAKilys~is------------N~akLAstLV~L~~ 185 (624)
T 3lvg_A 126 LAKTNRLAELEEF----I-NGPNNAH---IQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGE 185 (624)
T ss_dssp HHTSCSSSTTTST----T-SCCSSSC---THHHHHHHHHSCCSTTSSTTGGGSC------------CCTTTSSSSSSCSG
T ss_pred HHhhCcHHHHHHH----H-cCCCccc---HHHHHHHHHHccCHHHHHHHHHhCc------------cHHHHHHHHHHHHH
Confidence 6666664432211 1 1344433 2356666666666665555443221 11244555566666
Q ss_pred hhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249 317 TDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFY 396 (765)
Q Consensus 317 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 396 (765)
+..|++.-+++ +++.+|......+...+.+.-|..+--.++-. ++. +-.+...|...|-+++-+..++
T Consensus 186 yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ade---L~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 186 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---ADE---LEELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp GGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SSC---CSGGGSSSSTTCCCTTSTTTHH
T ss_pred HHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HHH---HHHHHHHHHhCCCHHHHHHHHH
Confidence 66665554443 22344555555555556555554443333321 221 1123344555666666666666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 004249 397 KALQILEDNIDARLTLASLLLEDAKDEEAISLL 429 (765)
Q Consensus 397 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (765)
.++.+..........||.+|.+- ++++-.+.+
T Consensus 254 aglglErAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 254 AALGLERAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred HHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 66655555555555566555443 233444333
No 264
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.02 E-value=8.3e-05 Score=74.24 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=166.4
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249 123 ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL 202 (765)
Q Consensus 123 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 202 (765)
+.+.+|..+|.++...|+..+|+..|-++ +++..+.....+..+.|.+++=+.++..+-+. ...+.+-..|..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 56789999999999999999999988765 34444556667778899999999998877654 3445555678888
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249 203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV 282 (765)
Q Consensus 203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A 282 (765)
|.+.++..+-.+++ ..|+.+. ....|.-++..|.|+.|.-+|..+ ++ |..|+.++..+|+|..|
T Consensus 126 yAk~~rL~elEefl-----~~~N~A~-iq~VGDrcf~e~lYeAAKilys~i----sN------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-----NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNV----SN------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-----SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGS----CC------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-----cCCCccc-HHHHHHHHHHccCHHHHHHHHHhC----cc------HHHHHHHHHHHHHHHHH
Confidence 88888865543332 2354443 457899999999999987766432 22 23788889999999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHH
Q 004249 283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHML 362 (765)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 362 (765)
++.-+++ .+...|-....++...+++.-|..+--.++-. ++-+-.+...|...|.+++-+.+++..
T Consensus 190 VdaArKA---------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 190 VDGARKA---------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp TTTTTTC---------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHhc---------CChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8876554 34455666777888999998887776665422 111233556788999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHh
Q 004249 363 EANAGVHNDGCLHLKIAECSLAL 385 (765)
Q Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~ 385 (765)
+.+ ..-+...+..||.+|.+-
T Consensus 256 lgl--ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 256 LGL--ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTS--TTCCHHHHHHHHHHHHSS
T ss_pred hCC--CchhHHHHHHHHHHHHhc
Confidence 987 677888888888888664
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.88 E-value=23 Score=34.20 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcC
Q 004249 389 EKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLT 430 (765)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (765)
.+|+.+-.+.=...-.+++.+..+|..|.+.|++.+|..+|-
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 444444443212234678999999999999999999999884
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.78 E-value=39 Score=32.65 Aligned_cols=138 Identities=16% Similarity=0.096 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCH----
Q 004249 89 PEIRRMLGDASLHYALGRY---EEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY--KQKDS---- 159 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~---- 159 (765)
..+...+.+-...+..|+| =+|-+.++.+ +.=|.+.++|++|++.+...... .-...
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi--------------~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLV--------------AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHH--------------HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 3455666677778888998 6777766644 33456678888887766543221 00111
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249 160 SLWKLIFPWLIEQGD--TTWAMSCLSEAVKADPN-DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL 236 (765)
Q Consensus 160 ~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 236 (765)
+.-..+..+|...+- -++...-+.+++...|. .+. .. .=..+|+.+-.+.-...-.++..+..+|..
T Consensus 76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~-r~---------~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~ 145 (336)
T 3lpz_A 76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPV-RK---------RFVKEMIDWSKKFGDYPAGDPELHHVVGTL 145 (336)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHH-HH---------HHHHHHHHHHHHHSSCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcH-HH---------HHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 112222234433321 12233333333333332 221 00 012233333333111123567888888888
Q ss_pred HHHcCCHHHHHHHH
Q 004249 237 YQKSGQIESSVDIL 250 (765)
Q Consensus 237 ~~~~g~~~~A~~~~ 250 (765)
|.+.+++.+|..+|
T Consensus 146 ~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 146 YVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHccCCHHHHHHHH
Confidence 88888888888777
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.74 E-value=44 Score=32.00 Aligned_cols=27 Identities=26% Similarity=0.079 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHhcC
Q 004249 404 DNIDARLTLASLLLEDAKDEEAISLLT 430 (765)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (765)
.+++.+..+|..+.+.|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578899999999999999999998875
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.97 E-value=64 Score=30.89 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWL 150 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 150 (765)
.+...+.+-...+..|+|=+|.+.++.+. .=|.+.+++++|++.+..
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~--------------~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIA--------------NRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHH--------------HHHHHhcCHHHHHHHHHH
Confidence 35555666677788889888888877553 334455666666665443
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=71.51 E-value=40 Score=27.48 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEE 123 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 123 (765)
.+...-+..|..++..|..++.+++..+.....|-
T Consensus 5 ~el~kkLmeAK~~ildG~v~qGveii~k~~~ssni 39 (172)
T 1wy6_A 5 SEIIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTK 39 (172)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCc
Confidence 34556677889999999999999999998776553
No 270
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.90 E-value=75 Score=36.31 Aligned_cols=110 Identities=7% Similarity=-0.108 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC--HHHHHHHHHHHHHh
Q 004249 130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD-PND--FKLKFHLASLYVEL 206 (765)
Q Consensus 130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~--~~~~~~la~~~~~~ 206 (765)
.+...+...|.++-|.+ .+..-|.++..-+.+|.++...|++++|..+|+++-.-- ..+ .........+.-
T Consensus 815 ~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~-- 888 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE-- 888 (950)
T ss_dssp HHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH--
T ss_pred HHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC--
Confidence 35555666677765443 445556777677778888888888888888888765321 111 000000000000
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004249 207 GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGH 257 (765)
Q Consensus 207 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 257 (765)
..+........|...+.++...+-++.++...+.+++.-
T Consensus 889 ------------~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 889 ------------KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp ------------HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ------------cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 000011112356666777777777777777777777643
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.59 E-value=58 Score=37.24 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 198 HLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYL 254 (765)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 254 (765)
.+...+...|.++-|. ..+...|.++..-+.+|.++...|++++|..+|+++-
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3556667777776543 4556778888888999999999999999999999865
No 272
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=60.61 E-value=6.7 Score=28.32 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=25.9
Q ss_pred HHhHHHHHHHhchHHHHHHHHHHHHhhhh
Q 004249 684 LYNIARAYHHVGLVSLAASYYEKVLAMYQ 712 (765)
Q Consensus 684 ~~~lg~~~~~~g~~~~A~~~y~k~l~~~~ 712 (765)
...+||=|..+|+|+.|+.+|+-+++.=.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~ 43 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMN 43 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998754
No 273
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=59.53 E-value=31 Score=25.16 Aligned_cols=32 Identities=16% Similarity=0.398 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRL 120 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 120 (765)
..++.++..|..+++.++|.+|..+|+++...
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 35677889999999999999999999998754
No 274
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=58.96 E-value=16 Score=25.92 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=27.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhhCCCChH
Q 004249 608 ISGHQFTMISHHQDAAREYLEAYKLLPENPL 638 (765)
Q Consensus 608 ~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 638 (765)
.+|..+...|++++|+.+|.+|+..+|+...
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 3699999999999999999999999998643
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=52.60 E-value=41 Score=23.90 Aligned_cols=30 Identities=13% Similarity=0.426 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249 198 HLASLYVELGNFQRAADVYRQMVQLCPENI 227 (765)
Q Consensus 198 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 227 (765)
.+|..+...|++++|..+|-+|+...|.-.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 445555555555555555555555555443
No 276
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=50.37 E-value=77 Score=26.72 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--c-h---HH---HHHHHHHHHcCCHHHHHHHHHHHhc
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL--P-N---SY---HILGLVHDALGNTAKAMGCYWLAAC 153 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~-~---~~---~~l~~~~~~~g~~~~A~~~~~~a~~ 153 (765)
......+..+..++..|+|=+|-+.++.+-...+.. . . .+ ...|..+...|+..-|...+.+++.
T Consensus 30 ~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 30 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344556778888999999999999999888776544 1 1 22 2233344567888888888888765
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.37 E-value=98 Score=26.20 Aligned_cols=48 Identities=19% Similarity=0.063 Sum_probs=31.2
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc
Q 004249 355 ALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL 402 (765)
Q Consensus 355 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 402 (765)
+..+|..+...+.....+..|...|..+...|++.+|.++|+..++..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 445565555544455666667777777777777777777777777654
No 278
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=47.64 E-value=27 Score=25.85 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004249 88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIR 119 (765)
Q Consensus 88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 119 (765)
+.....++.+|...-..|+|++|+.+|..++.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456677888888888999999988887765
No 279
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=47.42 E-value=1.2e+02 Score=24.89 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=39.9
Q ss_pred HHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249 344 DLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQI 401 (765)
Q Consensus 344 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 401 (765)
..+..+|+-++-.+.+..++.. .+-+|+.+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445667777766777665544 5667888888888888888888888888887664
No 280
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=43.29 E-value=37 Score=24.47 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRL 120 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 120 (765)
.++...+..|+-+...|+|+.|+.+|+.++..
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 35667788889999999999999999988763
No 281
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=41.24 E-value=52 Score=24.10 Aligned_cols=30 Identities=27% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004249 90 EIRRMLGDASLHYALGRYEEAISVLHEVIR 119 (765)
Q Consensus 90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 119 (765)
.+..++.+|...=..|+|++|+.+|.++++
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344556677777777888888877776654
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.52 E-value=1.7e+02 Score=24.77 Aligned_cols=81 Identities=14% Similarity=0.032 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCC-----CCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc-CCCChHHHHHHHHHHHHccccHHHHH
Q 004249 283 LKHIELVDLVYYSG-----KELLLALKIKAGICHIQLGNTDKAEILLTAIHWE-NVSDHAESINEIADLFKNRELYSTAL 356 (765)
Q Consensus 283 ~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~ 356 (765)
..++++++..+..+ ++.-..+|...+.. . +.+..+|..+... -....+..|...|..+...|++.+|.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRL---C---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH---C---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh---c---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 55677777765432 22333344444432 1 3355566655432 23566788889999999999999999
Q ss_pred HHHHHHHhccCCC
Q 004249 357 KYYHMLEANAGVH 369 (765)
Q Consensus 357 ~~~~~~~~~~~~~ 369 (765)
.+|+..+.....|
T Consensus 117 ~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 117 AIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHTTCBS
T ss_pred HHHHHHHHcCCCc
Confidence 9999999874334
No 283
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=40.25 E-value=25 Score=26.45 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=26.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhhCCCC
Q 004249 608 ISGHQFTMISHHQDAAREYLEAYKLLPEN 636 (765)
Q Consensus 608 ~~g~~~~~~~~~~~A~~~~~~a~~~~p~~ 636 (765)
.+|..+...|+++.|+.+|.+|+..+|+.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 46999999999999999999999999974
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.24 E-value=1.4e+02 Score=26.67 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 354 TALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 354 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
++..+|.-+...+.....+..|...|..+...|++.+|..+|+..++....
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 455566655555445666777777777777777777777777777776543
No 285
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=37.05 E-value=72 Score=23.92 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004249 87 VCPEIRRMLGDASLHYALGRYEEAISVLHEVIR 119 (765)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 119 (765)
+-.....++.+|...=..|+|++|+.+|..++.
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344566677888888888888888888877654
No 286
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=36.95 E-value=65 Score=23.55 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIR 119 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 119 (765)
+..++.+|...=..|+|++|+.+|.++++
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455666666666777776666665543
No 287
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.04 E-value=2e+02 Score=24.26 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHH---H---HHHHHHHhCCHHHHHHHHHHHHH
Q 004249 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKF---H---LASLYVELGNFQRAADVYRQMVQ 221 (765)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~---~---la~~~~~~g~~~~A~~~~~~al~ 221 (765)
+.-+..++..|+|-+|-++++.+....+.. ...+. . .|....+.|+...|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344556667788888888888877765433 12222 2 23344566777777777777765
No 288
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=34.71 E-value=68 Score=32.69 Aligned_cols=88 Identities=5% Similarity=0.012 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHhCCCC------------H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCCCH
Q 004249 208 NFQRAADVYRQMVQLCPEN------------I----EALKMGAKLYQKSGQIESSVDILEDYLKGHP--------TEADF 263 (765)
Q Consensus 208 ~~~~A~~~~~~al~~~p~~------------~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--------~~~~~ 263 (765)
..+++...+.++....-.+ - .....+-.+|++.|+..-+...++..-...+ .....
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 3566777777776653211 0 1223455788899999988888866533322 11124
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH-hcC
Q 004249 264 GVIDLLASMLVQMNAYDRVLKHIELVDLV-YYS 295 (765)
Q Consensus 264 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 295 (765)
...+.+|.++...++|.+|.+.+..+... .+.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 46678999999999999999999999987 654
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.09 E-value=2e+02 Score=23.88 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=33.0
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 355 ALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 355 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
+..+|.-+...+.....+..|...|..+...|++.+|.++|+..++....
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 56666666555445566667777777777777777777777777766433
No 290
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=33.95 E-value=93 Score=27.51 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249 195 LKFHLASLYVELGNFQRAADVYRQMVQLCPEN 226 (765)
Q Consensus 195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 226 (765)
..+.+|.++...++|.+|.+.+..|+...|..
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 34455555555555555555555555555443
No 291
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.16 E-value=3.3e+02 Score=26.00 Aligned_cols=113 Identities=7% Similarity=-0.111 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChh--hHHHHHHHHHHHHHhhhcHHHHHHH-----HHHHHHh---
Q 004249 455 KIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHE--EHRLLIIDLCKTLASLHRYEDAIKI-----INLILKL--- 524 (765)
Q Consensus 455 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~-----~~~al~~--- 524 (765)
.+..|.-+...|++++|+..|..++... .+-.+-... +...-++.++.-|.-.=+.+.+++- ..+.+++
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i-~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAY 195 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRI-TLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAY 195 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh-heeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 4567888899999999999999988532 111111111 1222344444333221111111111 0111111
Q ss_pred -cc-CCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCch
Q 004249 525 -GY-GKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRL 568 (765)
Q Consensus 525 -~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 568 (765)
.. ...|.........+....++.++|..|....+++|+..|...
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 10 112333333333344488999999999999999999998643
No 292
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=32.85 E-value=60 Score=35.18 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG 139 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 139 (765)
+.+|...+..|+|.-|.++...++..+|++..+...++.+|.++|
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555554433
No 293
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=32.66 E-value=2.9e+02 Score=25.20 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249 497 LIIDLCKTLASLHRYEDAIKIINLILKLGY 526 (765)
Q Consensus 497 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 526 (765)
-+..++.+..+.++|++......++....+
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~ 35 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNE 35 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 456678888899999999999999988763
No 294
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=32.48 E-value=71 Score=25.24 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIR 119 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 119 (765)
..+..++.+|...=..|+|++|+.+|..++.
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455667777777778888888888877654
No 295
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=32.05 E-value=79 Score=23.15 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIR 119 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 119 (765)
..+..++.+|...=..|+|++|+.+|..++.
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555667777777778888888888877665
No 296
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=31.83 E-value=1e+02 Score=27.19 Aligned_cols=34 Identities=6% Similarity=-0.136 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 004249 91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL 124 (765)
Q Consensus 91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 124 (765)
+...+-.|..++..++|.+|.+.+.++++..|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 3344455555666666666666666666555543
No 297
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=31.67 E-value=99 Score=23.26 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 004249 95 LGDASLHYALGRYEEAISVLHEVIRLEEE 123 (765)
Q Consensus 95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 123 (765)
+..|..++..|+++.|+..|-+++...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46788899999999999988888887765
No 298
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.76 E-value=2.8e+02 Score=24.39 Aligned_cols=69 Identities=3% Similarity=-0.151 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249 335 HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404 (765)
Q Consensus 335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 404 (765)
...+|...+..+ ..+...++..+|.-+...+.....+..|...|..+...|++.+|..+|+..++....
T Consensus 79 YLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 79 FLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 345666666654 244467888888888776557778889999999999999999999999999987643
No 299
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.09 E-value=1.1e+02 Score=31.01 Aligned_cols=62 Identities=6% Similarity=0.045 Sum_probs=44.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCC
Q 004249 165 IFPWLIEQGDTTWAMSCLSEAVKADP----------NDFKLKFHLASLYVELGNFQRAADVYRQMVQL-CPEN 226 (765)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 226 (765)
+-.+|++.|+..-+...++..-...+ .-...++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 55778899998888888765433221 11345678888888888888888888888877 6654
No 300
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=29.82 E-value=88 Score=23.24 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249 162 WKLIFPWLIEQGDTTWAMSCLSEAV 186 (765)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al 186 (765)
+...+..+...|+|++|+.+.+++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3446666667777777766665554
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.79 E-value=5.5e+02 Score=27.58 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=18.7
Q ss_pred HHHHHHHH--HHhccHHHHHHHHHHHHHHcCCC
Q 004249 375 HLKIAECS--LALKEREKSIIYFYKALQILEDN 405 (765)
Q Consensus 375 ~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~ 405 (765)
+..+..++ ...|+++.|++.+++ +.+-|-+
T Consensus 539 Ll~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 539 LLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 33344444 677888888888777 4455653
No 302
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.75 E-value=1.3e+02 Score=22.57 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCc----h--HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004249 96 GDASLHYALGRYEEAISVLHEVIRLEEELP----N--SYHILGLVHDALGNTAKAMGCYWLAAC 153 (765)
Q Consensus 96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~--~~~~l~~~~~~~g~~~~A~~~~~~a~~ 153 (765)
..|..++..|+|=+|=+.++.+-...|... . +....|......|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 445666777777777777777766554311 1 112223333345555 6666665544
No 303
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.59 E-value=6e+02 Score=27.28 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHHHH--HHcCCHHHHHHhcCCC
Q 004249 410 LTLASLL--LEDAKDEEAISLLTPP 432 (765)
Q Consensus 410 ~~l~~~~--~~~g~~~~A~~~~~~~ 432 (765)
..+..++ ...|+++.|++.+++.
T Consensus 540 l~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 540 LNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3344444 7789999999999874
No 304
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.43 E-value=1.1e+02 Score=22.76 Aligned_cols=27 Identities=26% Similarity=0.151 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249 374 LHLKIAECSLALKEREKSIIYFYKALQ 400 (765)
Q Consensus 374 ~~~~la~~~~~~g~~~~A~~~~~~al~ 400 (765)
.+-..+..+...|+|++|+++.+++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566777777777777777666653
No 305
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.45 E-value=4.3e+02 Score=25.19 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh--HHHHHHHHHHHHHhhhcH------------HHHHHHHHH
Q 004249 455 KIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE--HRLLIIDLCKTLASLHRY------------EDAIKIINL 520 (765)
Q Consensus 455 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~------------~~A~~~~~~ 520 (765)
.+..|.-+...|++++|+..|..++... .+-.+-...+ ...-++.++.-|.-.=+. ++-...++-
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i-~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL 183 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSV-PLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM 183 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHG-GGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh-hheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence 4577888899999999999999998532 1111112111 222233333333211111 221111221
Q ss_pred HHHhcc-CCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCc
Q 004249 521 ILKLGY-GKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHR 567 (765)
Q Consensus 521 al~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 567 (765)
+.=... ...|.........+....++.++|..|...-+++|+..|..
T Consensus 184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 231 (320)
T 3mkr_B 184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP 231 (320)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 111111 11233333333334448899999999999999999998864
No 306
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=25.87 E-value=1.5e+02 Score=21.77 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249 336 AESINEIADLFKNRELYSTALKYYHMLEAN 365 (765)
Q Consensus 336 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 365 (765)
......-|.-+.+.++|.+|..+|+++...
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 445555666677888888888888888765
No 307
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.76 E-value=4.4e+02 Score=25.13 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Q 004249 89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEE 122 (765)
Q Consensus 89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 122 (765)
..+...+..|..++..|++++|+..|+.++..-|
T Consensus 112 ~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 145 (325)
T 3mv2_A 112 DVVNEKMNEGYKNFKLNKPDIAIECFREAIYRIT 145 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 3455678889999999999999999999987655
No 308
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.94 E-value=72 Score=23.31 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=13.6
Q ss_pred HHHHHhchHHHHHHHHHHHHhh
Q 004249 689 RAYHHVGLVSLAASYYEKVLAM 710 (765)
Q Consensus 689 ~~~~~~g~~~~A~~~y~k~l~~ 710 (765)
.-..+.|++.+|+.+|..+++.
T Consensus 27 ve~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 27 VKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 3335566667776666666665
No 309
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=23.69 E-value=78 Score=23.12 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=13.4
Q ss_pred HHHHHhchHHHHHHHHHHHHhh
Q 004249 689 RAYHHVGLVSLAASYYEKVLAM 710 (765)
Q Consensus 689 ~~~~~~g~~~~A~~~y~k~l~~ 710 (765)
.-..+.|++.+|+.+|..+++.
T Consensus 19 ve~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 3335566666666666666655
No 310
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=23.04 E-value=1.8e+02 Score=24.38 Aligned_cols=18 Identities=0% Similarity=-0.042 Sum_probs=8.2
Q ss_pred cHHHHHHHHHHHHhcCCh
Q 004249 300 LLALKIKAGICHIQLGNT 317 (765)
Q Consensus 300 ~~~~~~~l~~~~~~~~~~ 317 (765)
+....+.+|..|....++
T Consensus 40 p~~~kY~LA~SYI~~e~L 57 (161)
T 2ynq_A 40 PYVIQYELASSYVMTESL 57 (161)
T ss_dssp CHHHHHHHHHHHHHTSSS
T ss_pred ChhHHHHHHHHHHHccCC
Confidence 344444444444444433
No 311
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.21 E-value=4.3e+02 Score=23.39 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=35.8
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 004249 379 AECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLL 429 (765)
Q Consensus 379 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (765)
..++.+.|.+++|.+.+++....+|.+......|..+-.+..-+..-++.|
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqnF 171 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNF 171 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHTC
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHhc
Confidence 445677888888888888888877776667777777766665554444433
No 312
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.54 E-value=3.3e+02 Score=32.03 Aligned_cols=206 Identities=8% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-------------------------------
Q 004249 372 GCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDA------------------------------- 420 (765)
Q Consensus 372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------------------------------- 420 (765)
.+++.-+-..+...-+.+++.+.|+++++..|++..++..+...+....
T Consensus 1107 ~e~~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1186 (1354)
T 3lxu_X 1107 AESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQ 1186 (1354)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchhh
Q ss_pred -----CHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHH
Q 004249 421 -----KDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHR 495 (765)
Q Consensus 421 -----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~ 495 (765)
..++-++....++..-... .++..|..+.+.+.-..-...-+.+ ....-.
T Consensus 1187 ~~~~~~~~~ii~~ad~vi~~id~~-----------------~l~~~~g~k~d~~~~a~k~k~~m~~--------~k~~l~ 1241 (1354)
T 3lxu_X 1187 KKVRSALERIVKLADKVIQETDSE-----------------ALLSYYGLKNDTRADAAKIKTNMDK--------QKNTLI 1241 (1354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHT-----------------TTSTTCCSTHHHHCSSSCCHHHHHH--------HHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCHH-----------------HHHHHhcCCCCCchHHHHHHHHHHH--------HHHHHH
Q ss_pred HHHHH----HHHHHHhhhcHHHHHHHHHHHHHhccC-CCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhh
Q 004249 496 LLIID----LCKTLASLHRYEDAIKIINLILKLGYG-KFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTT 570 (765)
Q Consensus 496 ~~~~~----l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 570 (765)
+++.. |+.........++....|+.+.....+ -...+...+....+ -....++|..|+.++.++++..| ....
T Consensus 1242 ~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~-~~~~~~~~g~~~k~l~k~~~~k~-~~~~ 1319 (1354)
T 3lxu_X 1242 EALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALW-HAYAHGHYGRMYKYVVKLIEEKR-TRDH 1319 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHH-HHHHHTCHHHHHHHHHHHHHHTC-CHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHH-HHHHHHHHHHHHHHHHHHHhccc-cHHH
Q ss_pred hHHHHHHHhhhhhhhhHHHHHHHHH-HHhcCCCCCch
Q 004249 571 WNRYYKLVSRFEKIFSKHAKLLRNV-RAKYRDFVPPI 606 (765)
Q Consensus 571 ~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~p~~~~~~ 606 (765)
+..+..++...+-. --..+..++ .-++|....++
T Consensus 1320 ~~~~~~~~~~l~w~--h~~~~~~~~~~~~~p~~~~~f 1354 (1354)
T 3lxu_X 1320 FVELAAINGALGHE--HIRTVINRMMITAFPSSFRLF 1354 (1354)
T ss_dssp HHHHHHHHHHHSCH--HHHHHHHHHHHHHSCSSCCCC
T ss_pred HHHHHHHHHHcCCH--HHHHHHHhhhhhhCcccCCCC
No 313
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.21 E-value=3.8e+02 Score=22.27 Aligned_cols=86 Identities=6% Similarity=-0.088 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHH-HHHhcCChhHHHHHHHhhcccC-CCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249 282 VLKHIELVDLVYYSGKELLLALKIKAGI-CHIQLGNTDKAEILLTAIHWEN-VSDHAESINEIADLFKNRELYSTALKYY 359 (765)
Q Consensus 282 A~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~ 359 (765)
-..++++++..+..+..-..+..+.... .|.. ..+.+..+|.-+.... ....+..|...|..+...|++.+|..+|
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~--~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 124 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAE--YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVL 124 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHT--TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHH--hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567778877765433222222222211 1222 2344777777765332 3556778888999999999999999999
Q ss_pred HHHHhccCCC
Q 004249 360 HMLEANAGVH 369 (765)
Q Consensus 360 ~~~~~~~~~~ 369 (765)
+..+.....|
T Consensus 125 ~~Gi~~~A~P 134 (152)
T 4a1g_A 125 QRGIQNQAEP 134 (152)
T ss_dssp HHHHHTTCBS
T ss_pred HHHHHcCCcc
Confidence 9999874334
No 314
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.02 E-value=4.6e+02 Score=23.23 Aligned_cols=38 Identities=8% Similarity=-0.082 Sum_probs=22.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249 133 LVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI 170 (765)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 170 (765)
.++.+.|.|++|.+.+++....+|.+......|..+-.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~ 159 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIR 159 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Confidence 34566677777777777776655554444444444433
Done!