Query 004250
Match_columns 765
No_of_seqs 188 out of 532
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 19:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.4 1.2E-13 4.3E-18 118.7 4.7 59 11-69 5-63 (79)
2 2yum_A ZZZ3 protein, zinc fing 99.4 5.6E-13 1.9E-17 111.8 5.9 53 23-75 7-65 (75)
3 2cu7_A KIAA1915 protein; nucle 99.3 2.2E-12 7.6E-17 107.9 7.1 54 22-75 7-60 (72)
4 2iw5_B Protein corest, REST co 99.3 8.7E-13 3E-17 133.1 5.3 68 9-76 118-185 (235)
5 2xag_B REST corepressor 1; ami 99.2 5.8E-12 2E-16 138.1 5.4 67 11-77 367-433 (482)
6 2elk_A SPCC24B10.08C protein; 99.1 3.5E-11 1.2E-15 97.3 5.6 47 24-70 9-57 (58)
7 1x41_A Transcriptional adaptor 99.1 7.1E-11 2.4E-15 95.9 5.9 48 23-70 7-55 (60)
8 2eqr_A N-COR1, N-COR, nuclear 99.0 6E-10 2E-14 91.1 7.0 48 21-71 9-56 (61)
9 1irz_A ARR10-B; helix-turn-hel 99.0 7.9E-10 2.7E-14 92.7 7.2 55 21-75 4-63 (64)
10 1guu_A C-MYB, MYB proto-oncoge 98.9 8.9E-10 3E-14 86.4 6.1 47 23-69 2-49 (52)
11 2d9a_A B-MYB, MYB-related prot 98.9 1.9E-09 6.6E-14 86.9 5.6 48 22-69 6-54 (60)
12 1gvd_A MYB proto-oncogene prot 98.9 1.8E-09 6.3E-14 84.7 4.9 47 23-69 2-49 (52)
13 2ltp_A Nuclear receptor corepr 98.4 2.9E-10 9.8E-15 99.3 0.0 56 21-76 13-68 (89)
14 2cqr_A RSGI RUH-043, DNAJ homo 98.8 5.9E-09 2E-13 88.9 7.3 47 22-68 16-66 (73)
15 2din_A Cell division cycle 5-l 98.8 7.5E-09 2.6E-13 85.0 7.4 53 23-76 8-60 (66)
16 1w0t_A Telomeric repeat bindin 98.7 1.6E-08 5.4E-13 80.0 6.6 46 24-69 2-50 (53)
17 2dim_A Cell division cycle 5-l 98.7 8.8E-09 3E-13 85.5 5.4 48 22-69 7-55 (70)
18 2yqk_A Arginine-glutamic acid 98.7 1.2E-08 4.1E-13 84.2 5.8 46 23-71 8-54 (63)
19 1ity_A TRF1; helix-turn-helix, 98.7 2.2E-08 7.5E-13 83.0 6.8 49 21-69 7-58 (69)
20 2crg_A Metastasis associated p 98.6 4.2E-08 1.4E-12 82.7 6.3 47 22-71 6-53 (70)
21 2cjj_A Radialis; plant develop 98.6 6.4E-08 2.2E-12 86.0 7.6 54 23-76 7-64 (93)
22 3sjm_A Telomeric repeat-bindin 98.6 6.6E-08 2.3E-12 80.1 6.7 46 23-68 10-58 (64)
23 2k9n_A MYB24; R2R3 domain, DNA 98.6 6.9E-08 2.4E-12 85.7 6.5 52 23-74 52-103 (107)
24 2cqq_A RSGI RUH-037, DNAJ homo 98.5 1.8E-07 6.3E-12 79.5 6.6 46 22-68 6-55 (72)
25 3osg_A MYB21; transcription-DN 98.5 1.4E-07 4.8E-12 86.1 6.2 49 21-69 8-56 (126)
26 3osg_A MYB21; transcription-DN 98.5 1.3E-07 4.5E-12 86.3 5.9 50 22-71 60-109 (126)
27 1gv2_A C-MYB, MYB proto-oncoge 98.5 1.1E-07 3.6E-12 83.7 4.7 47 23-69 55-101 (105)
28 1wgx_A KIAA1903 protein; MYB D 98.4 3.1E-07 1E-11 78.8 6.3 44 23-66 7-54 (73)
29 2k9n_A MYB24; R2R3 domain, DNA 98.4 2.3E-07 8E-12 82.3 5.8 46 24-69 1-47 (107)
30 4a69_C Nuclear receptor corepr 98.4 1.2E-07 4E-12 84.1 3.8 43 22-64 41-83 (94)
31 1gv2_A C-MYB, MYB proto-oncoge 98.4 1.8E-07 6.1E-12 82.2 4.9 47 23-69 3-50 (105)
32 3zqc_A MYB3; transcription-DNA 98.4 3.4E-07 1.1E-11 83.9 5.7 49 22-70 52-100 (131)
33 2llk_A Cyclin-D-binding MYB-li 98.3 6E-07 2E-11 76.7 6.2 45 21-66 20-64 (73)
34 3zqc_A MYB3; transcription-DNA 98.3 2.6E-07 8.9E-12 84.7 3.3 46 24-69 2-48 (131)
35 1h8a_C AMV V-MYB, MYB transfor 98.3 6.3E-07 2.2E-11 81.6 5.5 48 22-69 25-73 (128)
36 1h8a_C AMV V-MYB, MYB transfor 98.3 3.5E-07 1.2E-11 83.2 3.3 46 23-68 78-123 (128)
37 2ckx_A NGTRF1, telomere bindin 98.2 2.5E-06 8.4E-11 74.4 6.6 46 25-70 1-51 (83)
38 2juh_A Telomere binding protei 98.1 6.2E-06 2.1E-10 76.6 7.3 53 18-70 11-68 (121)
39 1h89_C C-MYB, MYB proto-oncoge 98.1 1.5E-06 5.2E-11 81.6 3.1 47 22-68 108-154 (159)
40 4eef_G F-HB80.4, designed hema 98.0 3.8E-07 1.3E-11 78.6 -1.0 44 24-67 20-67 (74)
41 2aje_A Telomere repeat-binding 98.0 4.3E-06 1.5E-10 75.9 5.7 49 20-68 9-62 (105)
42 2roh_A RTBP1, telomere binding 98.0 9.2E-06 3.1E-10 75.5 7.6 50 21-70 28-82 (122)
43 1h89_C C-MYB, MYB proto-oncoge 98.0 4.3E-06 1.5E-10 78.5 5.2 48 22-69 56-104 (159)
44 1x58_A Hypothetical protein 49 98.0 5.9E-06 2E-10 69.2 5.3 46 21-66 5-53 (62)
45 1ign_A Protein (RAP1); RAP1,ye 97.4 7.6E-05 2.6E-09 76.4 3.4 50 22-71 6-61 (246)
46 2xag_B REST corepressor 1; ami 96.4 0.00058 2E-08 75.6 0.0 46 24-72 189-234 (482)
47 1ofc_X ISWI protein; nuclear p 96.2 0.0042 1.4E-07 65.3 5.2 48 25-72 111-159 (304)
48 3hm5_A DNA methyltransferase 1 95.3 0.039 1.3E-06 49.4 7.1 43 25-67 31-78 (93)
49 1fex_A TRF2-interacting telome 94.0 0.068 2.3E-06 43.7 5.1 46 24-69 2-57 (59)
50 1ug2_A 2610100B20RIK gene prod 93.9 0.16 5.5E-06 45.7 7.6 50 25-75 34-86 (95)
51 1ofc_X ISWI protein; nuclear p 93.1 0.2 6.9E-06 52.8 8.0 53 23-75 211-279 (304)
52 4b4c_A Chromodomain-helicase-D 93.0 0.14 5E-06 49.4 6.3 52 23-74 6-62 (211)
53 2y9y_A Imitation switch protei 92.4 0.11 3.8E-06 56.2 5.1 47 25-71 124-172 (374)
54 2hzd_A Transcriptional enhance 87.4 0.49 1.7E-05 41.7 4.1 46 22-67 4-70 (82)
55 2ebi_A DNA binding protein GT- 87.2 0.83 2.9E-05 38.9 5.3 45 23-67 3-61 (86)
56 4iej_A DNA methyltransferase 1 86.0 1.8 6.2E-05 38.9 7.0 52 24-75 30-86 (93)
57 4b4c_A Chromodomain-helicase-D 85.1 1.5 5.3E-05 42.3 6.6 52 24-76 134-200 (211)
58 2lr8_A CAsp8-associated protei 83.8 0.23 7.8E-06 42.7 0.0 41 26-67 16-59 (70)
59 1ig6_A MRF-2, modulator recogn 77.0 2.2 7.4E-05 37.9 4.2 48 44-98 55-107 (107)
60 2xb0_X Chromo domain-containin 60.1 8.6 0.00029 39.9 4.9 28 24-51 168-196 (270)
61 2xb0_X Chromo domain-containin 54.4 23 0.00078 36.8 6.9 44 24-67 3-51 (270)
62 1ign_A Protein (RAP1); RAP1,ye 47.7 30 0.001 35.8 6.4 28 45-72 173-200 (246)
63 2ohd_A Probable molybdenum cof 31.6 23 0.00078 34.3 2.5 27 436-462 46-72 (151)
64 2y9y_A Imitation switch protei 31.1 53 0.0018 35.8 5.4 49 23-72 227-291 (374)
65 2ekn_A Probable molybdenum cof 30.7 24 0.00082 34.4 2.5 26 436-461 55-80 (159)
66 2iih_A Molybdenum cofactor bio 30.5 24 0.00083 34.3 2.5 27 436-462 53-79 (157)
67 2eey_A Molybdopterin biosynthe 30.4 24 0.00084 34.4 2.5 27 436-462 55-81 (162)
68 2eqy_A RBP2 like, jumonji, at 29.9 2.1E+02 0.0073 25.9 8.5 47 31-77 44-101 (122)
69 1ekr_A Molybdenum cofactor bio 25.6 28 0.00096 34.0 2.0 27 436-462 55-81 (161)
70 2li6_A SWI/SNF chromatin-remod 20.2 1.1E+02 0.0038 27.4 4.6 32 44-75 71-102 (116)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=118.73 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=54.5
Q ss_pred cccCCCCcccccCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 11 VLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 11 v~K~rKPytitk~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
.+|.++++.....+..||+||+++||+||++||.+|.+||.+||+||..||+.|+++|+
T Consensus 5 ~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 5 SSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp SSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred ccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45788888888899999999999999999999999999999999999999999988763
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.6e-13 Score=111.83 Aligned_cols=53 Identities=38% Similarity=0.696 Sum_probs=49.1
Q ss_pred CCCcCCHHHHHHHHHHHHHhC------hhHHHHHHHhCCCCHHHHHhHHHHHHHHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYG------RAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YG------rdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~ 75 (765)
.++.||+||+++|+++|+.|| .+|.+||.+|++||..||+.|+|+||.++.+.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 577999999999999999999 79999999999999999999999999876543
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.32 E-value=2.2e-12 Score=107.95 Aligned_cols=54 Identities=31% Similarity=0.632 Sum_probs=50.2
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~ 75 (765)
..++.||+||+++|+++++.||.+|..||.+|++||..||+.|+++||.++.+.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 367899999999999999999999999999999999999999999998887554
No 4
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.31 E-value=8.7e-13 Score=133.08 Aligned_cols=68 Identities=29% Similarity=0.487 Sum_probs=62.0
Q ss_pred cccccCCCCcccccCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHHHHh
Q 004250 9 DLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (765)
Q Consensus 9 ~~v~K~rKPytitk~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~~ 76 (765)
+.+.+.|+|+.+.+...+||+||+++|++||++||++|..||.+|||||..||+.|+++|+.++....
T Consensus 118 ~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRlnLD~ 185 (235)
T 2iw5_B 118 GGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDE 185 (235)
T ss_dssp TTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHH
T ss_pred hhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhhHHH
Confidence 45668889999999999999999999999999999999999999999999999999999988854443
No 5
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.21 E-value=5.8e-12 Score=138.07 Aligned_cols=67 Identities=30% Similarity=0.524 Sum_probs=60.0
Q ss_pred cccCCCCcccccCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHHHHhh
Q 004250 11 VLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEAL 77 (765)
Q Consensus 11 v~K~rKPytitk~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~~~ 77 (765)
+...|.|+.+++...+||+|||++|++||++|||+|..|+++|||||..||++|+++|+.++....+
T Consensus 367 ~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ld~i 433 (482)
T 2xag_B 367 IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEV 433 (482)
T ss_dssp TGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHH
T ss_pred cccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhChHHH
Confidence 4466788888999999999999999999999999999999999999999999999999887654443
No 6
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.15 E-value=3.5e-11 Score=97.33 Aligned_cols=47 Identities=23% Similarity=0.519 Sum_probs=44.8
Q ss_pred CCcCCHHHHHHHHHHHHHhC-hhHHHHHHHhC-CCCHHHHHhHHHHHHH
Q 004250 24 RERWTEEEHNRFLEALKLYG-RAWQRIEEHIG-TKKAVQIRSHAQKFFS 70 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YG-rdWkkIAe~Vg-TRT~vQVRSHAQKYF~ 70 (765)
++.||.||+++|++++++|| .+|..||.+|+ +||..|||.|+++||+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 67899999999999999999 69999999999 9999999999999985
No 7
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.11 E-value=7.1e-11 Score=95.86 Aligned_cols=48 Identities=31% Similarity=0.542 Sum_probs=45.0
Q ss_pred CCCcCCHHHHHHHHHHHHHhC-hhHHHHHHHhCCCCHHHHHhHHHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFFS 70 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YG-rdWkkIAe~VgTRT~vQVRSHAQKYF~ 70 (765)
.+..||.||+++|+++++.|| .+|.+||.+|++||..|||.|+++||.
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 467999999999999999999 599999999999999999999998864
No 8
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=6e-10 Score=91.07 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=43.2
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHH
Q 004250 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSK 71 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~K 71 (765)
.+....||+|||++|++||.+||++|.+||.+|++||..||+-| ||+.
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~---Yy~~ 56 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLY---YYLT 56 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHH---HHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHH---HHHh
Confidence 45678999999999999999999999999999999999999866 5554
No 9
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=98.98 E-value=7.9e-10 Score=92.74 Aligned_cols=55 Identities=35% Similarity=0.469 Sum_probs=49.0
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhCh---hHHHHHHHhC--CCCHHHHHhHHHHHHHHHHHH
Q 004250 21 TKQRERWTEEEHNRFLEALKLYGR---AWQRIEEHIG--TKKAVQIRSHAQKFFSKLEKE 75 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGr---dWkkIAe~Vg--TRT~vQVRSHAQKYF~KL~k~ 75 (765)
.+.+.+||+|+|++|++|++.+|. -|++|-++++ .-|..||+||.|||++++.+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 467889999999999999999996 4899999855 579999999999999998763
No 10
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.95 E-value=8.9e-10 Score=86.39 Aligned_cols=47 Identities=26% Similarity=0.515 Sum_probs=44.0
Q ss_pred CCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
.++.||.||+++++++++.||. +|..||.+|++||..||+.|+++|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 3679999999999999999998 9999999999999999999998875
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.87 E-value=1.9e-09 Score=86.88 Aligned_cols=48 Identities=17% Similarity=0.473 Sum_probs=44.4
Q ss_pred cCCCcCCHHHHHHHHHHHHHhC-hhHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YG-rdWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
..++.||.||+++++++++.|| .+|..||.+|+.||..||+.|+++|+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 3578999999999999999999 59999999999999999999988764
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.86 E-value=1.8e-09 Score=84.74 Aligned_cols=47 Identities=26% Similarity=0.567 Sum_probs=43.9
Q ss_pred CCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
.++.||.||+++++++++.||. +|..||.+|+.||..||+.|+++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 3679999999999999999997 7999999999999999999998874
No 13
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.36 E-value=2.9e-10 Score=99.28 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=50.5
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHHHHh
Q 004250 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~~ 76 (765)
....+.||+||+++|++++..||.+|..||.+|++||..||+.|++.|+.++....
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~~ 68 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDE 68 (89)
Confidence 45678999999999999999999999999999999999999999999877765443
No 14
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.83 E-value=5.9e-09 Score=88.91 Aligned_cols=47 Identities=19% Similarity=0.399 Sum_probs=43.3
Q ss_pred cCCCcCCHHHHHHHHHHHHHhC----hhHHHHHHHhCCCCHHHHHhHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYG----RAWQRIEEHIGTKKAVQIRSHAQKF 68 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YG----rdWkkIAe~VgTRT~vQVRSHAQKY 68 (765)
.....||.+|..+|++||..|| .+|.+||.+|+.||..||+.|.+.+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 66 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3678999999999999999999 5899999999999999999997753
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=7.5e-09 Score=85.00 Aligned_cols=53 Identities=26% Similarity=0.525 Sum_probs=48.2
Q ss_pred CCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHHHHh
Q 004250 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~~ 76 (765)
.++.||.||+++++++++.||..|.+||.++| ||..||+.|++.|+....+..
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHHhChHhcCC
Confidence 57899999999999999999999999999665 999999999999988876654
No 16
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.74 E-value=1.6e-08 Score=79.99 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=42.9
Q ss_pred CCcCCHHHHHHHHHHHHHhC-hhHHHHHHHhC--CCCHHHHHhHHHHHH
Q 004250 24 RERWTEEEHNRFLEALKLYG-RAWQRIEEHIG--TKKAVQIRSHAQKFF 69 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YG-rdWkkIAe~Vg--TRT~vQVRSHAQKYF 69 (765)
++.||+||+++++++++.|| .+|..|+.+++ .||..||+.++.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999 59999999999 999999999988764
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=8.8e-09 Score=85.46 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=44.3
Q ss_pred cCCCcCCHHHHHHHHHHHHHhC-hhHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YG-rdWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
..++.||.||.++++++++.|| .+|..||.+|++||..|||.|+++|+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 3578999999999999999999 69999999999999999999988763
No 18
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.2e-08 Score=84.18 Aligned_cols=46 Identities=26% Similarity=0.588 Sum_probs=40.8
Q ss_pred CCCcCCHHHHHHHHHHHHHhChhHHHHHH-HhCCCCHHHHHhHHHHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYGRAWQRIEE-HIGTKKAVQIRSHAQKFFSK 71 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWkkIAe-~VgTRT~vQVRSHAQKYF~K 71 (765)
....||+||+.+|++||.+||++|.+|+. +|++||+.||.-+ ||..
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f---YY~w 54 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITF---YYYW 54 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHH---HHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHH---Hhcc
Confidence 35799999999999999999999999998 5999999999644 6654
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.71 E-value=2.2e-08 Score=83.00 Aligned_cols=49 Identities=20% Similarity=0.500 Sum_probs=44.7
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhC-hhHHHHHHHhC--CCCHHHHHhHHHHHH
Q 004250 21 TKQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIG--TKKAVQIRSHAQKFF 69 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YG-rdWkkIAe~Vg--TRT~vQVRSHAQKYF 69 (765)
.+.++.||.||.++++++++.|| ..|..|+.+++ .||..||+.++..|+
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 45688999999999999999999 59999999999 999999999988753
No 20
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.62 E-value=4.2e-08 Score=82.66 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=42.2
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHH-HhCCCCHHHHHhHHHHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEE-HIGTKKAVQIRSHAQKFFSK 71 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe-~VgTRT~vQVRSHAQKYF~K 71 (765)
.....||+||+.+|++||.+||++|..|+. +|++||+.||.-| |+..
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f---YY~w 53 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEY---YYMW 53 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHH---HHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHH---HHhh
Confidence 467799999999999999999999999999 6999999999766 6643
No 21
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.62 E-value=6.4e-08 Score=85.99 Aligned_cols=54 Identities=15% Similarity=0.448 Sum_probs=47.9
Q ss_pred CCCcCCHHHHHHHHHHHHHhC----hhHHHHHHHhCCCCHHHHHhHHHHHHHHHHHHh
Q 004250 23 QRERWTEEEHNRFLEALKLYG----RAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YG----rdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~~ 76 (765)
..+.||.||..+|+++|..|| ..|.+||.+|+.||..||+.|+++++..+....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ie 64 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE 64 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 356899999999999999997 489999999999999999999999887775554
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.60 E-value=6.6e-08 Score=80.09 Aligned_cols=46 Identities=24% Similarity=0.559 Sum_probs=41.8
Q ss_pred CCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhC--CCCHHHHHhHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIG--TKKAVQIRSHAQKF 68 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~Vg--TRT~vQVRSHAQKY 68 (765)
.+..||+||.++++++++.||. +|..|+.+++ .||..||+-++..|
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999996 9999999866 89999999998764
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.57 E-value=6.9e-08 Score=85.71 Aligned_cols=52 Identities=19% Similarity=0.393 Sum_probs=47.3
Q ss_pred CCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEK 74 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k 74 (765)
.++.||+||+.++++++..||..|..||.+|++||..||+.|+..+..++.+
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHH
Confidence 5789999999999999999999999999999999999999998876665543
No 24
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.48 E-value=1.8e-07 Score=79.48 Aligned_cols=46 Identities=17% Similarity=0.563 Sum_probs=40.9
Q ss_pred cCCCcCCHHHHHHHHHHHHHhC----hhHHHHHHHhCCCCHHHHHhHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYG----RAWQRIEEHIGTKKAVQIRSHAQKF 68 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YG----rdWkkIAe~VgTRT~vQVRSHAQKY 68 (765)
.....||.||+.+|.++|.+|+ .+|.+||.+|| ||..||+.|++++
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L 55 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 3467899999999999999998 48999999995 9999999998763
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.48 E-value=1.4e-07 Score=86.06 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=45.6
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
...++.||.||.++++++++.||.+|..||.+|++||..||+.++.+|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 3457899999999999999999999999999999999999999988774
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.48 E-value=1.3e-07 Score=86.26 Aligned_cols=50 Identities=22% Similarity=0.483 Sum_probs=44.6
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSK 71 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~K 71 (765)
..++.||.||.++++++++.||..|..|+.+|++||..||+.|+..+..+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 35679999999999999999999999999999999999999997655333
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.46 E-value=1.1e-07 Score=83.68 Aligned_cols=47 Identities=26% Similarity=0.485 Sum_probs=43.8
Q ss_pred CCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
.++.||.||+.++++++..||..|..|+.+|++||..||+.|+..+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999977643
No 28
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.42 E-value=3.1e-07 Score=78.81 Aligned_cols=44 Identities=14% Similarity=0.391 Sum_probs=40.3
Q ss_pred CCCcCCHHHHHHHHHHHHHhCh----hHHHHHHHhCCCCHHHHHhHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYGR----AWQRIEEHIGTKKAVQIRSHAQ 66 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr----dWkkIAe~VgTRT~vQVRSHAQ 66 (765)
....||.+|..+|++||..|++ +|.+||++||+||..||+-|.+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 3568999999999999999996 7999999999999999998855
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.42 E-value=2.3e-07 Score=82.31 Aligned_cols=46 Identities=26% Similarity=0.490 Sum_probs=42.7
Q ss_pred CCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 24 RERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
.+.||.||.++++++++.||. +|..||.+|++||..||+.++.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 368999999999999999997 9999999999999999999988764
No 30
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.42 E-value=1.2e-07 Score=84.09 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=40.3
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhH
Q 004250 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSH 64 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSH 64 (765)
.....||+|||++|.++|..||++|.+|+.+|++||..||.-|
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~ 83 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLY 83 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHH
Confidence 4567999999999999999999999999999999999999866
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.41 E-value=1.8e-07 Score=82.25 Aligned_cols=47 Identities=26% Similarity=0.554 Sum_probs=43.6
Q ss_pred CCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
.++.||.||.++++++++.||. +|..||.+|++||..||+.|+++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 4679999999999999999997 8999999999999999999988763
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.36 E-value=3.4e-07 Score=83.94 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=44.6
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFS 70 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~ 70 (765)
..++.||.||++++++++..||..|..|+.+|++||..||+.|+..|+.
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSIS 100 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTG
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999776543
No 33
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.34 E-value=6e-07 Score=76.65 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=42.2
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHH
Q 004250 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQ 66 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQ 66 (765)
...++.||+||.++++++++.||..|..||.++ .||..||+.++.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 457889999999999999999999999999999 999999999965
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.30 E-value=2.6e-07 Score=84.66 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=43.2
Q ss_pred CCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 24 RERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
++.||.||.++++++++.||. +|..||.+|++||..||+-|+++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 478999999999999999995 8999999999999999999998875
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.29 E-value=6.3e-07 Score=81.57 Aligned_cols=48 Identities=27% Similarity=0.577 Sum_probs=44.2
Q ss_pred cCCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
..++.||.||.++++++++.||. +|..||.+|++||..||+.|+.+|+
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 35789999999999999999997 7999999999999999999988764
No 36
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.26 E-value=3.5e-07 Score=83.22 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=43.0
Q ss_pred CCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKF 68 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKY 68 (765)
..+.||+||+++++++++.||..|..|+.+|++||..||+.|+..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999997653
No 37
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.18 E-value=2.5e-06 Score=74.41 Aligned_cols=46 Identities=13% Similarity=0.364 Sum_probs=41.9
Q ss_pred CcCCHHHHHHHHHHHHHhCh-hHHHHHHH----hCCCCHHHHHhHHHHHHH
Q 004250 25 ERWTEEEHNRFLEALKLYGR-AWQRIEEH----IGTKKAVQIRSHAQKFFS 70 (765)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGr-dWkkIAe~----VgTRT~vQVRSHAQKYF~ 70 (765)
..||.||.+.+++|+++||. .|..|+.. ++.||.+||+.++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 37999999999999999998 99999985 789999999999888644
No 38
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.07 E-value=6.2e-06 Score=76.59 Aligned_cols=53 Identities=13% Similarity=0.347 Sum_probs=46.9
Q ss_pred cccccCCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHh----CCCCHHHHHhHHHHHHH
Q 004250 18 YTITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHI----GTKKAVQIRSHAQKFFS 70 (765)
Q Consensus 18 ytitk~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~V----gTRT~vQVRSHAQKYF~ 70 (765)
....+.+..||.||.+.+++|+++||. .|..|+.+. ..||.+||+.++..++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 445678899999999999999999998 999999974 78999999999887643
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.06 E-value=1.5e-06 Score=81.58 Aligned_cols=47 Identities=26% Similarity=0.462 Sum_probs=43.4
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKF 68 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKY 68 (765)
...+.||+||+.+++++++.||..|..|+.+|++||..||+.|+..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999997653
No 40
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.05 E-value=3.8e-07 Score=78.59 Aligned_cols=44 Identities=16% Similarity=0.419 Sum_probs=39.7
Q ss_pred CCcCCHHHHHHHHHHHHHhCh----hHHHHHHHhCCCCHHHHHhHHHH
Q 004250 24 RERWTEEEHNRFLEALKLYGR----AWQRIEEHIGTKKAVQIRSHAQK 67 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr----dWkkIAe~VgTRT~vQVRSHAQK 67 (765)
...||.+|..+|..||..|++ +|.+||+.||.||+.||+.|+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 458999999999999999997 79999999999999999999874
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.04 E-value=4.3e-06 Score=75.91 Aligned_cols=49 Identities=12% Similarity=0.333 Sum_probs=44.0
Q ss_pred cccCCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHh----CCCCHHHHHhHHHHH
Q 004250 20 ITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHI----GTKKAVQIRSHAQKF 68 (765)
Q Consensus 20 itk~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~V----gTRT~vQVRSHAQKY 68 (765)
..+.+..||.||.+.+++|+++||. .|..|+... ..||.+||+.++..+
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 3567889999999999999999998 999999854 789999999998774
No 42
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.02 E-value=9.2e-06 Score=75.55 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=44.5
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHh----CCCCHHHHHhHHHHHHH
Q 004250 21 TKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHI----GTKKAVQIRSHAQKFFS 70 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~V----gTRT~vQVRSHAQKYF~ 70 (765)
.+.+..||.||.+.+++|+++||. .|..|+.+. ..||.+||+.++.+++.
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 467889999999999999999998 999999864 78999999999887543
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.01 E-value=4.3e-06 Score=78.52 Aligned_cols=48 Identities=25% Similarity=0.528 Sum_probs=44.2
Q ss_pred cCCCcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF 69 (765)
..++.||.||.+++++++..||. +|..||.++++||..||+.++++|+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 35789999999999999999996 7999999999999999999988764
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.01 E-value=5.9e-06 Score=69.18 Aligned_cols=46 Identities=24% Similarity=0.409 Sum_probs=41.2
Q ss_pred ccCCCcCCHHHHHHHHHHHHHhChhHHHHHH---HhCCCCHHHHHhHHH
Q 004250 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEE---HIGTKKAVQIRSHAQ 66 (765)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGrdWkkIAe---~VgTRT~vQVRSHAQ 66 (765)
+..+..||+||.+.+++|+++||+.|+.|.. |+..||.|.|.....
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHH
Confidence 4578899999999999999999999999995 778999999987644
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.37 E-value=7.6e-05 Score=76.39 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=44.0
Q ss_pred cCCCcCCHHHHHHHHHHHHHhChh------HHHHHHHhCCCCHHHHHhHHHHHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYGRA------WQRIEEHIGTKKAVQIRSHAQKFFSK 71 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrd------WkkIAe~VgTRT~vQVRSHAQKYF~K 71 (765)
..+..||+||.+..|+.+++||.. |..||.+++.||..|||.|+..|+.+
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 356799999999999999999874 99999999999999999999887533
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.35 E-value=0.00058 Score=75.58 Aligned_cols=46 Identities=22% Similarity=0.485 Sum_probs=0.0
Q ss_pred CCcCCHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHhHHHHHHHHH
Q 004250 24 RERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKL 72 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGrdWkkIAe~VgTRT~vQVRSHAQKYF~KL 72 (765)
...||.+|+.+|.+||..||++|.+|+.+|++||..+|--| ||..-
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~y---YY~WK 234 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKF---YYSWK 234 (482)
T ss_dssp -------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHH---hcccc
Confidence 45899999999999999999999999999999999999766 66543
No 47
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.15 E-value=0.0042 Score=65.34 Aligned_cols=48 Identities=23% Similarity=0.500 Sum_probs=45.0
Q ss_pred CcCCHHHHHHHHHHHHHhCh-hHHHHHHHhCCCCHHHHHhHHHHHHHHH
Q 004250 25 ERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFFSKL 72 (765)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGr-dWkkIAe~VgTRT~vQVRSHAQKYF~KL 72 (765)
+-||..+-..|+.|+.+||| +|..||..|++||+..|+-|++-|+.+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 47999999999999999999 9999999999999999999999887665
No 48
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=95.30 E-value=0.039 Score=49.41 Aligned_cols=43 Identities=9% Similarity=0.338 Sum_probs=39.0
Q ss_pred CcCCHHHHHHHHHHHHHhChhHHHHHHHh-----CCCCHHHHHhHHHH
Q 004250 25 ERWTEEEHNRFLEALKLYGRAWQRIEEHI-----GTKKAVQIRSHAQK 67 (765)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGrdWkkIAe~V-----gTRT~vQVRSHAQK 67 (765)
..||.||...+++..+.||..|-.|+... +.||..+|+.+.-.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~ 78 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHH
Confidence 79999999999999999999999999966 57999999988433
No 49
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=94.04 E-value=0.068 Score=43.75 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=41.3
Q ss_pred CCcCCHHHHHHHHHHHHHh--------Ch-hHHHHHH-HhCCCCHHHHHhHHHHHH
Q 004250 24 RERWTEEEHNRFLEALKLY--------GR-AWQRIEE-HIGTKKAVQIRSHAQKFF 69 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~Y--------Gr-dWkkIAe-~VgTRT~vQVRSHAQKYF 69 (765)
+..||+||...+++-|..| |. -|+.|++ .++.+|-.++|.|..|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999 54 8999999 799999999999977753
No 50
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=93.91 E-value=0.16 Score=45.72 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=44.0
Q ss_pred CcCCHHHHHHHHHHHHHhCh---hHHHHHHHhCCCCHHHHHhHHHHHHHHHHHH
Q 004250 25 ERWTEEEHNRFLEALKLYGR---AWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (765)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGr---dWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~ 75 (765)
.-||.||.+-.|...+.-|. .|..|+..+|.|++.||..+.|. +++|-..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~-Lm~Lf~~ 86 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE-LMQLFHT 86 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHH-HHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHH-HHHHHHH
Confidence 38999999999999999997 89999999999999999999886 4555443
No 51
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.05 E-value=0.2 Score=52.79 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=44.5
Q ss_pred CCCcCCHHHHHHHHHHHHHhCh----hHHHHH------------HHhCCCCHHHHHhHHHHHHHHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYGR----AWQRIE------------EHIGTKKAVQIRSHAQKFFSKLEKE 75 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr----dWkkIA------------e~VgTRT~vQVRSHAQKYF~KL~k~ 75 (765)
.+..||++|+..||-+|.+||- .|..|- -||.+||+.+|..|++--..-+.++
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999996 799996 3788999999999999654444454
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.95 E-value=0.14 Score=49.43 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=43.0
Q ss_pred CCCcCCHHHHHHHHHHHHHhC--h-hHHHHHHH--hCCCCHHHHHhHHHHHHHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYG--R-AWQRIEEH--IGTKKAVQIRSHAQKFFSKLEK 74 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YG--r-dWkkIAe~--VgTRT~vQVRSHAQKYF~KL~k 74 (765)
....||+.|-..|+.|+.+|| + +|..|+.. +..||...|+.+++-|..+..+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999 4 79999875 5689999999998876665544
No 53
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=92.42 E-value=0.11 Score=56.20 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=43.5
Q ss_pred CcCCHHHHHHHHHHHHHhCh-hHHHHHHHhC-CCCHHHHHhHHHHHHHH
Q 004250 25 ERWTEEEHNRFLEALKLYGR-AWQRIEEHIG-TKKAVQIRSHAQKFFSK 71 (765)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGr-dWkkIAe~Vg-TRT~vQVRSHAQKYF~K 71 (765)
+-||..+=..|+.|+.+||| +...|+..|+ +||+..|+-+++-|+.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999 7999999998 99999999999877765
No 54
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=87.41 E-value=0.49 Score=41.68 Aligned_cols=46 Identities=28% Similarity=0.414 Sum_probs=36.2
Q ss_pred cCCCcCCHHHHHHHHHHHHHhCh----hH------------HHHHHHhC-----CCCHHHHHhHHHH
Q 004250 22 KQRERWTEEEHNRFLEALKLYGR----AW------------QRIEEHIG-----TKKAVQIRSHAQK 67 (765)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGr----dW------------kkIAe~Vg-----TRT~vQVRSHAQK 67 (765)
...+.|.++-...|++||..|.. .+ ..|++||- .||..||-||-|-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHH
Confidence 35679999999999999999863 11 24666553 7999999999884
No 55
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=87.21 E-value=0.83 Score=38.88 Aligned_cols=45 Identities=11% Similarity=0.326 Sum_probs=36.6
Q ss_pred CCCcCCHHHHHHHHHHHHHhC----------hhHHHHHHHhC----CCCHHHHHhHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYG----------RAWQRIEEHIG----TKKAVQIRSHAQK 67 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YG----------rdWkkIAe~Vg----TRT~vQVRSHAQK 67 (765)
....||++|-.+||.+..... ..|..||+.+. .||+.||+.-...
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~n 61 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRN 61 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 467999999999999987532 17999998643 7999999998654
No 56
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=86.01 E-value=1.8 Score=38.89 Aligned_cols=52 Identities=12% Similarity=0.325 Sum_probs=42.0
Q ss_pred CCcCCHHHHHHHHHHHHHhChhHHHHHHHh-----CCCCHHHHHhHHHHHHHHHHHH
Q 004250 24 RERWTEEEHNRFLEALKLYGRAWQRIEEHI-----GTKKAVQIRSHAQKFFSKLEKE 75 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGrdWkkIAe~V-----gTRT~vQVRSHAQKYF~KL~k~ 75 (765)
...||.||-..+++..+.|+-.|--|+... +.||..++..+.-..-.+|.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999999843 3799999998854444444443
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=85.07 E-value=1.5 Score=42.26 Aligned_cols=52 Identities=23% Similarity=0.500 Sum_probs=39.8
Q ss_pred CCcCCHHHHHHHHHHHHHhCh-hHHHHHH--Hh------------CCCCHHHHHhHHHHHHHHHHHHh
Q 004250 24 RERWTEEEHNRFLEALKLYGR-AWQRIEE--HI------------GTKKAVQIRSHAQKFFSKLEKEA 76 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr-dWkkIAe--~V------------gTRT~vQVRSHAQKYF~KL~k~~ 76 (765)
...||.+|...+|.|+-+||- .|..|-. -+ .+.+.+.+...+. |++++.+..
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~l~~~ 200 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKLLSRD 200 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHHHHHH
Confidence 457999999999999999997 9999976 11 2455667777776 677766544
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=83.84 E-value=0.23 Score=42.67 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHHHhCh---hHHHHHHHhCCCCHHHHHhHHHH
Q 004250 26 RWTEEEHNRFLEALKLYGR---AWQRIEEHIGTKKAVQIRSHAQK 67 (765)
Q Consensus 26 ~WTeEEHelFLeGLe~YGr---dWkkIAe~VgTRT~vQVRSHAQK 67 (765)
.||.||.+-.|...++-|. .|..||..+ .||+.||..+.|.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~ 59 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQ 59 (70)
Confidence 7999999999999999997 899999988 7999999999775
No 59
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=77.04 E-value=2.2 Score=37.90 Aligned_cols=48 Identities=29% Similarity=0.595 Sum_probs=33.9
Q ss_pred hhHHHHHHHhC-----CCCHHHHHhHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCC
Q 004250 44 RAWQRIEEHIG-----TKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKR 98 (765)
Q Consensus 44 rdWkkIAe~Vg-----TRT~vQVRSHAQKYF~KL~k~~~~kG~~~g~~~di~iPpprpKR 98 (765)
+.|+.|++.+| |-...+++.|-++|+...+..-. | ..+..||+..|++
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~--~-----~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIK--G-----EEDKPLPPIKPRK 107 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHH--H-----HTSSSSCTTCSCC
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHc--C-----CCCCCCCCCCCCC
Confidence 38999999766 23357899999999887776432 1 2356788887764
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=60.14 E-value=8.6 Score=39.93 Aligned_cols=28 Identities=32% Similarity=0.787 Sum_probs=25.5
Q ss_pred CCcCCHHHHHHHHHHHHHhCh-hHHHHHH
Q 004250 24 RERWTEEEHNRFLEALKLYGR-AWQRIEE 51 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr-dWkkIAe 51 (765)
.-.|+.+|...+|.|+-+||- .|..|-.
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 346999999999999999999 9999976
No 61
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=54.36 E-value=23 Score=36.83 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=36.5
Q ss_pred CCcCCHHHHHHHHHHHHHhCh---hHHHHHH--HhCCCCHHHHHhHHHH
Q 004250 24 RERWTEEEHNRFLEALKLYGR---AWQRIEE--HIGTKKAVQIRSHAQK 67 (765)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr---dWkkIAe--~VgTRT~vQVRSHAQK 67 (765)
.+.||+-|-++|+++|.+||. +|..|.. -+..|+...|+.-++-
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~ 51 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDE 51 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 457999999999999999995 8999976 3678888887766553
No 62
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=47.73 E-value=30 Score=35.84 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=24.9
Q ss_pred hHHHHHHHhCCCCHHHHHhHHHHHHHHH
Q 004250 45 AWQRIEEHIGTKKAVQIRSHAQKFFSKL 72 (765)
Q Consensus 45 dWkkIAe~VgTRT~vQVRSHAQKYF~KL 72 (765)
-|+.|+++.+.+|...+|....||..+.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 7999999999999999999988876554
No 63
>2ohd_A Probable molybdenum cofactor biosynthesis protein; alpha + beta, biosynthetic protein; 2.20A {Sulfolobus tokodaii str}
Probab=31.61 E-value=23 Score=34.33 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCCC
Q 004250 436 IAAATVAAATAWWAAHGLLPLCAPFHA 462 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~~ 462 (765)
++.|=+|+-.|==-++-|||||-||+.
T Consensus 46 l~vAriAgImaaK~T~~LIPlCHpl~l 72 (151)
T 2ohd_A 46 ITVAKTAGILAAKKTPELIPMCHPIPL 72 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHhhhHhhhCcccCcCcc
Confidence 455666666666666799999999753
No 64
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=31.07 E-value=53 Score=35.77 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=40.0
Q ss_pred CCCcCCHHHHHHHHHHHHHhCh----hHHHHHH------------HhCCCCHHHHHhHHHHHHHHH
Q 004250 23 QRERWTEEEHNRFLEALKLYGR----AWQRIEE------------HIGTKKAVQIRSHAQKFFSKL 72 (765)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr----dWkkIAe------------~VgTRT~vQVRSHAQKYF~KL 72 (765)
.+..||++|...+|-+|-+||- .|.+|-. |+.+||+..|.-++.- ++++
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t-Li~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT-LLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH-HHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH-HHHH
Confidence 3568999999999999999996 5999932 3789999999988874 4444
No 65
>2ekn_A Probable molybdenum cofactor biosynthesis protein; structural genomic NPPSFA, national project on protein structural and function analyses; HET: FLC; 2.05A {Pyrococcus horikoshii}
Probab=30.71 E-value=24 Score=34.43 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCC
Q 004250 436 IAAATVAAATAWWAAHGLLPLCAPFH 461 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~ 461 (765)
++.|-+|+-.|==-+.-|||||-||+
T Consensus 55 l~vAriAgImaaK~T~~LIPlCHpl~ 80 (159)
T 2ekn_A 55 LATAQIAGILAVKRTPELIPLCHPIP 80 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCCC
T ss_pred HHHHHHHHHHHhhhHHhhCcccCccc
Confidence 45555666666566678999999965
No 66
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, structu genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A 3jqk_A 3jqm_A*
Probab=30.54 E-value=24 Score=34.30 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCCC
Q 004250 436 IAAATVAAATAWWAAHGLLPLCAPFHA 462 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~~ 462 (765)
++.|-+|+-.|==-+.-|||||-||+.
T Consensus 53 l~vAriAgImaAK~T~~LIPlCHpl~l 79 (157)
T 2iih_A 53 LVVAQLAGILAAKKTADLIPLCHPLPL 79 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhCcccCcccc
Confidence 445555555555566689999999753
No 67
>2eey_A Molybdopterin biosynthesis; molybdenium precursor bosynthesis, structural genomics; 1.94A {Geobacillus kaustophilus}
Probab=30.35 E-value=24 Score=34.43 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCCC
Q 004250 436 IAAATVAAATAWWAAHGLLPLCAPFHA 462 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~~ 462 (765)
++.|=+|+-.|==-+.-|||||-||+.
T Consensus 55 l~vAriAgImaAK~T~~LIPlCHpl~l 81 (162)
T 2eey_A 55 LAVAQVAGVMAAKKTADLIPMCHPLML 81 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhCcccCcccc
Confidence 344445555555556689999999753
No 68
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.89 E-value=2.1e+02 Score=25.91 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhC-------hhHHHHHHHhCCC----CHHHHHhHHHHHHHHHHHHhh
Q 004250 31 EHNRFLEALKLYG-------RAWQRIEEHIGTK----KAVQIRSHAQKFFSKLEKEAL 77 (765)
Q Consensus 31 EHelFLeGLe~YG-------rdWkkIAe~VgTR----T~vQVRSHAQKYF~KL~k~~~ 77 (765)
-+.+|..-.+.=| +.|+.|+..+|=. ...++|.|-+||+...+....
T Consensus 44 Ly~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~ 101 (122)
T 2eqy_A 44 LFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLS 101 (122)
T ss_dssp HHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHh
Confidence 3455555444433 3899999976532 246899999999998888653
No 69
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, MOCO DE translation; 2.00A {Escherichia coli} SCOP: d.58.21.1 PDB: 1eks_A*
Probab=25.60 E-value=28 Score=34.00 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCCC
Q 004250 436 IAAATVAAATAWWAAHGLLPLCAPFHA 462 (765)
Q Consensus 436 iaaATVAAAtAWWAahGLLPlcaPl~~ 462 (765)
++.|-+|+-.|==-++-|||||-||+.
T Consensus 55 l~vAriAgImaAK~T~~LIPlCHpl~l 81 (161)
T 1ekr_A 55 FATARIAGIQAAKRTWDLIPLCHPLML 81 (161)
T ss_dssp HHHHHHHHHHHHHTHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHHHhhhhhCcccCcCcc
Confidence 344444444444455689999999763
No 70
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.20 E-value=1.1e+02 Score=27.42 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=26.6
Q ss_pred hhHHHHHHHhCCCCHHHHHhHHHHHHHHHHHH
Q 004250 44 RAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (765)
Q Consensus 44 rdWkkIAe~VgTRT~vQVRSHAQKYF~KL~k~ 75 (765)
+.|+.|+..+|-....+++.|-.||+...+..
T Consensus 71 ~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~ 102 (116)
T 2li6_A 71 QQWSMVAQRLQISDYQQLESIYFRILLPYERH 102 (116)
T ss_dssp TCHHHHHHHHTSCCTTHHHHHHHHHHSHHHHH
T ss_pred CcHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 38999999877655889999999998887764
Done!