Query 004252
Match_columns 765
No_of_seqs 282 out of 1397
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 20:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4248 Ubiquitin-like protein 100.0 5.1E-36 1.1E-40 344.8 8.1 541 21-678 327-931 (1143)
2 cd01807 GDX_N ubiquitin-like d 99.7 2.6E-17 5.7E-22 139.3 8.7 73 19-91 1-73 (74)
3 PTZ00044 ubiquitin; Provisiona 99.7 1.2E-16 2.6E-21 134.8 9.0 75 19-93 1-75 (76)
4 cd01793 Fubi Fubi ubiquitin-li 99.7 1E-16 2.2E-21 135.9 8.6 73 19-93 1-73 (74)
5 cd01806 Nedd8 Nebb8-like ubiq 99.7 4.4E-16 9.6E-21 130.1 9.6 75 19-93 1-75 (76)
6 cd01802 AN1_N ubiquitin-like d 99.6 5.4E-16 1.2E-20 141.1 9.8 78 16-93 25-102 (103)
7 cd01797 NIRF_N amino-terminal 99.6 4.3E-16 9.3E-21 134.9 8.4 74 19-92 1-76 (78)
8 cd01803 Ubiquitin Ubiquitin. U 99.6 5.7E-16 1.2E-20 129.4 8.9 75 19-93 1-75 (76)
9 cd01810 ISG15_repeat2 ISG15 ub 99.6 5.5E-16 1.2E-20 131.4 8.3 73 21-93 1-73 (74)
10 cd01805 RAD23_N Ubiquitin-like 99.6 1E-15 2.2E-20 129.2 9.4 74 19-92 1-76 (77)
11 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 1E-15 2.2E-20 131.4 8.7 72 18-89 1-72 (73)
12 cd01809 Scythe_N Ubiquitin-lik 99.6 1.6E-15 3.4E-20 125.6 8.7 72 19-90 1-72 (72)
13 cd01798 parkin_N amino-termina 99.6 1.2E-15 2.5E-20 127.8 7.7 70 21-90 1-70 (70)
14 cd01804 midnolin_N Ubiquitin-l 99.6 1.8E-15 4E-20 130.3 9.0 75 18-93 1-75 (78)
15 cd01794 DC_UbP_C dendritic cel 99.6 2.5E-15 5.4E-20 127.7 7.4 69 21-89 1-69 (70)
16 cd01792 ISG15_repeat1 ISG15 ub 99.6 4.3E-15 9.2E-20 128.1 8.4 75 18-92 2-78 (80)
17 cd01808 hPLIC_N Ubiquitin-like 99.6 8E-15 1.7E-19 123.3 8.1 71 19-90 1-71 (71)
18 cd01790 Herp_N Homocysteine-re 99.5 1.3E-14 2.7E-19 127.3 7.9 72 18-89 1-78 (79)
19 PF00240 ubiquitin: Ubiquitin 99.5 1.6E-14 3.5E-19 119.3 7.7 68 24-91 1-68 (69)
20 cd01796 DDI1_N DNA damage indu 99.5 4.3E-14 9.3E-19 119.8 7.4 68 21-88 1-70 (71)
21 cd01812 BAG1_N Ubiquitin-like 99.5 7E-14 1.5E-18 116.0 7.8 70 19-89 1-70 (71)
22 cd01800 SF3a120_C Ubiquitin-li 99.5 9.2E-14 2E-18 118.8 7.7 69 26-94 5-73 (76)
23 TIGR00601 rad23 UV excision re 99.5 1.3E-13 2.8E-18 150.1 9.7 76 19-94 1-79 (378)
24 cd01763 Sumo Small ubiquitin-r 99.5 4.5E-13 9.8E-18 117.7 10.7 80 14-93 7-86 (87)
25 KOG0005 Ubiquitin-like protein 99.4 6.1E-14 1.3E-18 117.7 4.6 70 19-88 1-70 (70)
26 cd01813 UBP_N UBP ubiquitin pr 99.4 2.4E-13 5.1E-18 116.8 7.8 70 19-89 1-73 (74)
27 KOG0010 Ubiquitin-like protein 99.4 5.4E-13 1.2E-17 147.6 9.7 78 17-95 14-91 (493)
28 KOG0004 Ubiquitin/40S ribosoma 99.4 1.5E-13 3.3E-18 133.2 3.8 77 19-95 1-77 (156)
29 KOG0003 Ubiquitin/60s ribosoma 99.4 6.5E-14 1.4E-18 129.1 -0.2 76 19-94 1-76 (128)
30 smart00213 UBQ Ubiquitin homol 99.4 1.8E-12 4E-17 103.9 7.2 64 19-83 1-64 (64)
31 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 1E-11 2.3E-16 108.3 5.1 54 37-90 19-75 (75)
32 cd01799 Hoil1_N Ubiquitin-like 99.2 3.2E-11 6.8E-16 104.3 7.7 65 24-89 8-74 (75)
33 cd01814 NTGP5 Ubiquitin-like N 99.2 1.8E-11 4E-16 113.8 6.4 79 17-95 3-95 (113)
34 KOG0011 Nucleotide excision re 99.2 2.5E-11 5.4E-16 129.4 7.2 75 19-93 1-77 (340)
35 cd01769 UBL Ubiquitin-like dom 99.2 7E-11 1.5E-15 95.9 7.6 68 22-89 1-68 (69)
36 PF11976 Rad60-SLD: Ubiquitin- 99.1 3.5E-10 7.6E-15 94.7 8.8 71 19-89 1-72 (72)
37 KOG4248 Ubiquitin-like protein 98.9 1.1E-09 2.4E-14 129.2 6.9 75 19-94 3-77 (1143)
38 cd01795 USP48_C USP ubiquitin- 98.9 3.3E-09 7.1E-14 97.4 6.8 65 29-93 15-80 (107)
39 KOG0001 Ubiquitin and ubiquiti 98.9 1.6E-08 3.5E-13 80.6 9.2 72 21-92 2-73 (75)
40 cd01789 Alp11_N Ubiquitin-like 98.9 1.5E-08 3.2E-13 89.2 9.5 72 19-90 2-81 (84)
41 PF14560 Ubiquitin_2: Ubiquiti 98.7 6.2E-08 1.3E-12 84.9 7.8 73 19-91 2-84 (87)
42 PF13881 Rad60-SLD_2: Ubiquiti 98.7 1.2E-07 2.7E-12 88.1 9.8 77 18-94 2-92 (111)
43 PLN02560 enoyl-CoA reductase 98.6 7.3E-08 1.6E-12 103.1 8.0 69 19-87 1-80 (308)
44 cd01801 Tsc13_N Ubiquitin-like 98.4 5.6E-07 1.2E-11 77.5 6.3 68 20-87 2-74 (77)
45 cd00196 UBQ Ubiquitin-like pro 98.4 1.4E-06 3.1E-11 64.9 7.4 67 23-89 2-68 (69)
46 cd01788 ElonginB Ubiquitin-lik 98.4 8.9E-07 1.9E-11 83.2 7.0 70 21-91 5-81 (119)
47 cd01811 OASL_repeat1 2'-5' oli 98.1 9.5E-06 2.1E-10 71.5 7.7 73 19-92 1-78 (80)
48 PF11543 UN_NPL4: Nuclear pore 97.9 1.8E-05 3.8E-10 69.9 5.7 71 17-88 3-78 (80)
49 KOG1769 Ubiquitin-like protein 97.8 0.0002 4.2E-09 66.2 11.0 79 16-94 18-96 (99)
50 KOG1872 Ubiquitin-specific pro 97.7 6.9E-05 1.5E-09 84.0 6.9 74 18-92 3-77 (473)
51 KOG0006 E3 ubiquitin-protein l 97.5 0.00011 2.5E-09 79.2 5.9 71 19-89 1-74 (446)
52 KOG3493 Ubiquitin-like protein 97.5 3.7E-05 7.9E-10 66.4 1.3 70 19-88 2-71 (73)
53 KOG0003 Ubiquitin/60s ribosoma 97.1 0.00015 3.2E-09 68.1 0.2 39 105-143 8-47 (128)
54 KOG0004 Ubiquitin/40S ribosoma 97.0 0.00021 4.6E-09 70.5 1.0 41 105-145 8-49 (156)
55 PF08817 YukD: WXG100 protein 96.9 0.0021 4.5E-08 55.9 5.6 70 18-87 2-78 (79)
56 PF00789 UBX: UBX domain; Int 96.9 0.0083 1.8E-07 51.8 9.3 74 15-88 3-81 (82)
57 cd01802 AN1_N ubiquitin-like d 96.7 0.00016 3.5E-09 66.5 -2.4 62 76-142 9-73 (103)
58 KOG0005 Ubiquitin-like protein 96.5 0.00062 1.3E-08 58.3 -0.3 43 103-145 6-49 (70)
59 KOG4495 RNA polymerase II tran 96.4 0.007 1.5E-07 56.2 6.1 61 19-80 3-65 (110)
60 KOG4583 Membrane-associated ER 96.2 0.0008 1.7E-08 73.3 -1.4 80 15-94 6-91 (391)
61 smart00166 UBX Domain present 96.2 0.032 7E-07 48.5 8.8 71 17-87 3-78 (80)
62 COG5227 SMT3 Ubiquitin-like pr 96.2 0.011 2.5E-07 54.3 5.9 78 16-93 22-99 (103)
63 PF10302 DUF2407: DUF2407 ubiq 96.1 0.013 2.8E-07 53.9 6.0 57 21-77 3-64 (97)
64 KOG0013 Uncharacterized conser 95.8 0.015 3.2E-07 60.4 5.6 71 19-89 146-217 (231)
65 cd01767 UBX UBX (ubiquitin reg 95.8 0.068 1.5E-06 46.1 8.8 68 18-87 2-74 (77)
66 COG5417 Uncharacterized small 95.7 0.042 9.1E-07 49.1 7.4 70 18-87 4-80 (81)
67 cd01793 Fubi Fubi ubiquitin-li 95.7 0.00052 1.1E-08 58.5 -4.6 36 107-142 8-44 (74)
68 PF13019 Telomere_Sde2: Telome 95.5 0.057 1.2E-06 54.1 8.4 76 19-94 1-88 (162)
69 PF11470 TUG-UBL1: GLUT4 regul 95.5 0.041 8.8E-07 47.5 6.2 63 25-87 3-65 (65)
70 cd01772 SAKS1_UBX SAKS1-like U 95.4 0.11 2.4E-06 45.5 8.9 70 17-87 3-77 (79)
71 cd01770 p47_UBX p47-like ubiqu 95.2 0.13 2.7E-06 45.5 8.5 68 18-85 4-75 (79)
72 cd01794 DC_UbP_C dendritic cel 95.1 0.0014 3E-08 56.2 -3.7 39 104-142 5-44 (70)
73 KOG1639 Steroid reductase requ 94.8 0.052 1.1E-06 57.8 5.9 69 19-87 1-76 (297)
74 cd01774 Faf1_like2_UBX Faf1 ik 94.7 0.23 5E-06 44.6 9.0 70 17-87 3-82 (85)
75 KOG3206 Alpha-tubulin folding 94.4 0.098 2.1E-06 54.5 6.7 75 19-93 2-84 (234)
76 cd01807 GDX_N ubiquitin-like d 94.2 0.0026 5.7E-08 54.2 -4.3 38 105-142 8-46 (74)
77 PTZ00044 ubiquitin; Provisiona 93.9 0.0029 6.2E-08 53.7 -4.5 38 105-142 8-46 (76)
78 cd01771 Faf1_UBX Faf1 UBX doma 93.7 0.51 1.1E-05 42.0 9.0 71 17-88 3-78 (80)
79 cd01796 DDI1_N DNA damage indu 93.7 0.0053 1.1E-07 52.4 -3.4 37 106-142 8-45 (71)
80 cd01810 ISG15_repeat2 ISG15 ub 93.6 0.0044 9.5E-08 52.9 -3.9 39 104-142 5-44 (74)
81 cd01773 Faf1_like1_UBX Faf1 ik 93.3 0.66 1.4E-05 41.9 9.2 73 16-89 3-80 (82)
82 cd01798 parkin_N amino-termina 92.6 0.0073 1.6E-07 50.9 -4.0 38 105-142 6-44 (70)
83 cd01799 Hoil1_N Ubiquitin-like 92.4 0.013 2.8E-07 51.1 -2.9 37 105-142 10-47 (75)
84 cd01791 Ubl5 UBL5 ubiquitin-li 91.9 0.012 2.6E-07 51.1 -3.6 38 105-142 9-47 (73)
85 cd01800 SF3a120_C Ubiquitin-li 91.4 0.015 3.2E-07 50.1 -3.6 38 105-142 5-43 (76)
86 cd01797 NIRF_N amino-terminal 90.8 0.018 4E-07 50.4 -3.6 38 105-142 8-48 (78)
87 PF09379 FERM_N: FERM N-termin 89.6 1.5 3.3E-05 37.3 7.2 68 23-90 1-77 (80)
88 cd01806 Nedd8 Nebb8-like ubiq 89.2 0.024 5.1E-07 47.5 -4.1 38 105-142 8-46 (76)
89 cd01804 midnolin_N Ubiquitin-l 88.5 0.026 5.6E-07 49.1 -4.5 38 105-142 9-47 (78)
90 cd01813 UBP_N UBP ubiquitin pr 88.5 0.041 9E-07 47.7 -3.2 37 105-141 7-44 (74)
91 PF15044 CLU_N: Mitochondrial 88.3 0.74 1.6E-05 40.6 4.5 56 35-90 1-58 (76)
92 cd01803 Ubiquitin Ubiquitin. U 87.7 0.035 7.7E-07 46.5 -4.0 38 105-142 8-46 (76)
93 cd00754 MoaD Ubiquitin domain 86.3 4.1 8.8E-05 34.6 7.7 57 30-91 17-77 (80)
94 PLN02799 Molybdopterin synthas 86.1 3.9 8.4E-05 35.6 7.6 68 18-90 1-78 (82)
95 cd01805 RAD23_N Ubiquitin-like 86.1 0.048 1E-06 46.3 -4.1 38 105-142 8-48 (77)
96 KOG0012 DNA damage inducible p 86.0 1.3 2.8E-05 49.5 5.6 67 27-93 11-79 (380)
97 cd01792 ISG15_repeat1 ISG15 ub 85.5 0.084 1.8E-06 45.9 -2.9 37 105-141 10-49 (80)
98 cd01812 BAG1_N Ubiquitin-like 84.7 0.1 2.2E-06 43.4 -2.7 36 107-142 9-45 (71)
99 smart00295 B41 Band 4.1 homolo 84.6 8.3 0.00018 37.5 10.0 75 17-91 2-84 (207)
100 cd06406 PB1_P67 A PB1 domain i 84.6 3.5 7.6E-05 37.4 6.7 45 20-66 4-48 (80)
101 cd01809 Scythe_N Ubiquitin-lik 83.3 0.077 1.7E-06 44.0 -4.0 38 105-142 8-46 (72)
102 PF12754 Blt1: Cell-cycle cont 83.2 0.36 7.9E-06 52.7 0.0 67 12-78 72-158 (309)
103 smart00666 PB1 PB1 domain. Pho 82.9 4.8 0.0001 34.5 6.8 46 19-65 2-47 (81)
104 PRK06437 hypothetical protein; 81.9 8.5 0.00019 33.1 7.8 55 27-90 9-63 (67)
105 cd06407 PB1_NLP A PB1 domain i 81.6 7.6 0.00016 34.9 7.7 71 19-90 1-81 (82)
106 PRK08364 sulfur carrier protei 81.6 11 0.00025 32.3 8.5 63 18-90 4-66 (70)
107 cd01763 Sumo Small ubiquitin-r 81.2 0.16 3.4E-06 45.1 -3.0 39 105-143 19-58 (87)
108 PRK06488 sulfur carrier protei 80.2 9.9 0.00021 31.9 7.5 57 27-91 6-62 (65)
109 PF14836 Ubiquitin_3: Ubiquiti 79.0 8.8 0.00019 35.4 7.3 64 29-93 14-83 (88)
110 PF00240 ubiquitin: Ubiquitin 78.1 0.1 2.2E-06 43.3 -5.0 38 105-142 3-41 (69)
111 cd01808 hPLIC_N Ubiquitin-like 77.7 0.17 3.6E-06 42.9 -3.8 36 106-142 9-45 (71)
112 cd06409 PB1_MUG70 The MUG70 pr 77.5 6 0.00013 36.2 5.8 45 20-64 2-49 (86)
113 PF14453 ThiS-like: ThiS-like 76.0 7.3 0.00016 33.3 5.5 56 19-90 1-56 (57)
114 TIGR02958 sec_mycoba_snm4 secr 75.3 14 0.00031 42.4 9.4 76 19-95 3-85 (452)
115 PF11620 GABP-alpha: GA-bindin 74.6 7.2 0.00016 36.1 5.4 63 30-92 4-66 (88)
116 cd01815 BMSC_UbP_N Ubiquitin-l 74.6 0.31 6.8E-06 43.3 -3.1 26 117-142 20-49 (75)
117 cd01795 USP48_C USP ubiquitin- 74.1 0.45 9.9E-06 44.8 -2.3 34 109-142 16-50 (107)
118 TIGR01682 moaD molybdopterin c 73.8 24 0.00052 30.6 8.4 57 30-91 17-77 (80)
119 PF00564 PB1: PB1 domain; Int 73.1 12 0.00027 32.0 6.4 47 18-65 1-48 (84)
120 TIGR01687 moaD_arch MoaD famil 72.9 20 0.00043 31.5 7.7 59 29-91 16-85 (88)
121 TIGR00601 rad23 UV excision re 72.8 0.4 8.7E-06 53.6 -3.5 38 105-142 8-49 (378)
122 cd01790 Herp_N Homocysteine-re 72.4 0.43 9.3E-06 42.7 -2.8 38 105-142 9-51 (79)
123 KOG2982 Uncharacterized conser 72.0 5.8 0.00013 44.3 5.0 55 34-88 353-415 (418)
124 PF10209 DUF2340: Uncharacteri 71.9 9.8 0.00021 37.1 6.0 60 31-90 17-108 (122)
125 PRK06083 sulfur carrier protei 71.2 30 0.00065 31.4 8.6 68 14-91 14-81 (84)
126 KOG2507 Ubiquitin regulatory p 68.3 37 0.00081 39.4 10.3 78 16-93 312-394 (506)
127 KOG2086 Protein tyrosine phosp 68.1 9.6 0.00021 43.2 5.8 68 18-85 305-376 (380)
128 smart00455 RBD Raf-like Ras-bi 67.5 14 0.00031 32.2 5.5 45 21-65 2-46 (70)
129 PF08337 Plexin_cytopl: Plexin 65.4 15 0.00033 43.3 7.0 77 16-92 187-291 (539)
130 cd05992 PB1 The PB1 domain is 65.0 22 0.00048 30.2 6.2 45 20-65 2-47 (81)
131 cd06408 PB1_NoxR The PB1 domai 64.9 28 0.0006 32.1 7.1 47 18-66 2-48 (86)
132 PF12436 USP7_ICP0_bdg: ICP0-b 64.2 15 0.00033 38.8 6.1 79 14-92 64-154 (249)
133 cd01760 RBD Ubiquitin-like dom 64.2 28 0.00061 30.8 6.8 45 21-65 2-46 (72)
134 smart00213 UBQ Ubiquitin homol 63.9 0.55 1.2E-05 37.6 -3.6 35 108-142 10-45 (64)
135 PF02597 ThiS: ThiS family; I 63.2 22 0.00048 29.9 5.8 60 30-91 13-74 (77)
136 PF10790 DUF2604: Protein of U 62.8 24 0.00051 31.5 5.9 66 26-91 3-72 (76)
137 cd01768 RA RA (Ras-associating 61.8 57 0.0012 28.4 8.3 35 28-62 12-48 (87)
138 PRK05863 sulfur carrier protei 58.5 44 0.00096 28.3 6.8 57 27-91 6-62 (65)
139 PRK05659 sulfur carrier protei 57.6 63 0.0014 26.9 7.5 58 27-91 6-63 (66)
140 cd06398 PB1_Joka2 The PB1 doma 56.6 48 0.001 30.5 7.2 71 20-91 2-88 (91)
141 smart00144 PI3K_rbd PI3-kinase 55.0 75 0.0016 29.7 8.3 75 17-91 16-105 (108)
142 PRK08053 sulfur carrier protei 54.4 94 0.002 26.3 8.1 58 27-91 6-63 (66)
143 cd00565 ThiS ThiaminS ubiquiti 53.9 47 0.001 27.9 6.2 58 27-91 5-62 (65)
144 KOG0001 Ubiquitin and ubiquiti 52.2 1.3 2.9E-05 35.0 -3.2 37 105-141 7-44 (75)
145 cd01787 GRB7_RA RA (RAS-associ 52.0 43 0.00093 30.9 6.0 58 19-76 3-67 (85)
146 PF00788 RA: Ras association ( 51.7 68 0.0015 27.6 7.1 56 20-75 4-72 (93)
147 cd01814 NTGP5 Ubiquitin-like N 49.9 1.8 3.9E-05 41.5 -3.2 31 112-142 20-58 (113)
148 KOG4250 TANK binding protein k 48.6 32 0.00069 42.0 5.9 43 26-68 322-364 (732)
149 TIGR01683 thiS thiamine biosyn 47.3 80 0.0017 26.5 6.6 59 26-91 3-61 (64)
150 KOG2561 Adaptor protein NUB1, 47.0 7.5 0.00016 45.0 0.5 58 33-90 54-111 (568)
151 PF02196 RBD: Raf-like Ras-bin 46.1 87 0.0019 27.4 6.8 51 21-71 3-55 (71)
152 PRK06944 sulfur carrier protei 45.7 1.1E+02 0.0025 25.2 7.2 57 27-91 6-62 (65)
153 PF00794 PI3K_rbd: PI3-kinase 45.5 93 0.002 28.5 7.3 75 16-90 14-102 (106)
154 cd06411 PB1_p51 The PB1 domain 45.2 44 0.00095 30.4 4.9 37 29-65 7-43 (78)
155 KOG0007 Splicing factor 3a, su 43.9 9.9 0.00022 41.9 0.9 50 25-74 289-339 (341)
156 cd01764 Urm1 Urm1-like ubuitin 43.8 71 0.0015 29.3 6.2 56 34-91 24-91 (94)
157 cd06410 PB1_UP2 Uncharacterize 41.3 76 0.0016 29.6 6.0 40 23-63 17-56 (97)
158 KOG1364 Predicted ubiquitin re 40.8 34 0.00073 38.6 4.3 65 20-84 279-349 (356)
159 cd06396 PB1_NBR1 The PB1 domai 40.2 83 0.0018 28.8 5.9 36 19-55 1-38 (81)
160 cd01769 UBL Ubiquitin-like dom 39.4 2.5 5.4E-05 34.2 -3.5 36 106-141 6-42 (69)
161 PRK11130 moaD molybdopterin sy 37.0 2.6E+02 0.0057 24.5 8.5 53 33-90 19-77 (81)
162 PRK11840 bifunctional sulfur c 36.6 1.7E+02 0.0038 32.9 8.9 61 27-94 6-66 (326)
163 PF14732 UAE_UbL: Ubiquitin/SU 35.4 46 0.001 30.2 3.6 56 33-88 2-67 (87)
164 PRK07440 hypothetical protein; 34.8 2.9E+02 0.0063 24.0 8.3 64 18-91 4-67 (70)
165 PF02017 CIDE-N: CIDE-N domain 33.0 1.4E+02 0.003 27.3 6.1 65 21-91 5-72 (78)
166 KOG2689 Predicted ubiquitin re 33.0 1.2E+02 0.0025 33.7 6.7 71 17-87 209-284 (290)
167 PF14533 USP7_C2: Ubiquitin-sp 32.1 1.1E+02 0.0024 31.7 6.2 104 29-134 34-160 (213)
168 PF10407 Cytokin_check_N: Cdc1 32.1 1.3E+02 0.0027 27.1 5.7 62 29-91 3-71 (73)
169 PF14451 Ub-Mut7C: Mut7-C ubiq 31.7 1.4E+02 0.0031 26.9 6.1 54 28-90 22-76 (81)
170 cd01777 SNX27_RA Ubiquitin dom 29.3 1E+02 0.0022 28.7 4.7 42 19-60 2-43 (87)
171 PRK07696 sulfur carrier protei 28.5 3.4E+02 0.0075 23.3 7.6 58 27-91 6-64 (67)
172 PF11069 DUF2870: Protein of u 27.9 75 0.0016 30.2 3.7 33 60-93 3-37 (98)
173 cd06397 PB1_UP1 Uncharacterize 27.4 1.6E+02 0.0035 27.2 5.6 57 20-77 2-63 (82)
174 cd01817 RGS12_RBD Ubiquitin do 26.6 3.2E+02 0.0069 24.8 7.2 43 23-65 4-46 (73)
175 PF08825 E2_bind: E2 binding d 26.4 78 0.0017 28.8 3.5 55 33-88 1-69 (84)
176 PF02505 MCR_D: Methyl-coenzym 26.0 1.2E+02 0.0026 30.9 5.0 57 18-82 67-124 (153)
177 KOG3439 Protein conjugation fa 25.9 2.6E+02 0.0055 27.4 6.9 52 17-68 29-84 (116)
178 KOG4146 Ubiquitin-like protein 25.9 5E+02 0.011 24.9 8.6 76 17-93 3-100 (101)
179 PF12436 USP7_ICP0_bdg: ICP0-b 25.6 1.4E+02 0.0031 31.6 5.8 44 19-62 177-223 (249)
180 KOG0011 Nucleotide excision re 25.3 14 0.0003 41.3 -1.8 40 103-142 6-48 (340)
181 PTZ00380 microtubule-associate 25.0 2.3E+02 0.0049 27.9 6.5 72 18-90 27-105 (121)
182 PF00276 Ribosomal_L23: Riboso 24.3 1.2E+02 0.0027 27.6 4.4 40 29-68 21-61 (91)
183 PRK01777 hypothetical protein; 24.0 5.1E+02 0.011 24.2 8.3 68 17-93 2-79 (95)
184 PF11388 DotA: Phagosome traff 23.8 34 0.00073 32.4 0.7 13 371-384 89-101 (105)
185 TIGR03260 met_CoM_red_D methyl 23.3 1.4E+02 0.0031 30.3 4.9 53 18-77 66-118 (150)
186 PF14847 Ras_bdg_2: Ras-bindin 23.0 2.2E+02 0.0047 27.1 5.8 36 21-56 3-38 (105)
187 PF08828 DSX_dimer: Doublesex 22.1 72 0.0016 28.1 2.3 23 704-726 12-34 (62)
188 PRK05738 rplW 50S ribosomal pr 21.5 1.9E+02 0.0042 26.6 5.1 40 28-67 20-60 (92)
189 COG2104 ThiS Sulfur transfer p 21.5 4.7E+02 0.01 23.1 7.2 62 19-90 3-64 (68)
190 smart00314 RA Ras association 21.3 3.4E+02 0.0074 23.8 6.5 53 19-71 5-65 (90)
191 KOG0010 Ubiquitin-like protein 20.6 17 0.00036 42.5 -2.3 34 109-142 26-60 (493)
192 cd01766 Ufm1 Urm1-like ubiquit 20.6 4.6E+02 0.0099 24.2 7.0 60 33-92 20-80 (82)
193 COG0089 RplW Ribosomal protein 20.2 2.9E+02 0.0062 26.1 5.9 40 27-66 20-60 (94)
No 1
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-36 Score=344.84 Aligned_cols=541 Identities=21% Similarity=0.187 Sum_probs=330.3
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCCCCC-C
Q 004252 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD-G 99 (765)
Q Consensus 21 I~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~psss-~ 99 (765)
...++++-..+...+.+..++...|.+|..++|||...++|+|-|..++++..+..|+.+.+...+..++.+....+. +
T Consensus 327 dl~~~l~~p~~~~~~~~~~~~~~~~p~~~~qtgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~aspa~s~~~~~ 406 (1143)
T KOG4248|consen 327 DLRCNLACPPPRHLHVVRPMSHYTTPMVLQQTGIPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQAASPAPSSTNVE 406 (1143)
T ss_pred HhhhcccCCCCceeeecchhhhccCceeeecccccccccceeeecccccCCCCCCccccccCCCCCccccCcCccccCCC
Confidence 344556666677666677788888999999999999999999999999999999999999999999877766544321 1
Q ss_pred ---CCCCC--CCCCCc-----ccccccCcccccccccccCCCCCchhHHHHHHHhhhcCCCCCC---CCCCCc-ccc---
Q 004252 100 ---THNLP--GTSRSH-----GSHVAPSVVIETFNLPDRGDGVPSEISQIVSAVLGSFGLSNIG---SGGGGI-DLR--- 162 (765)
Q Consensus 100 ---~~I~v--~tGrti-----tleVspSdTIesVKv~IqkEGIPpdqQRLIFavL~S~Gl~n~~---~G~~~~-d~~--- 162 (765)
+..-+ ..+..+ ...+......+-++...+-+++-..+-...-++...+|..++. ++..+. +..
T Consensus 407 tp~qGatt~~~~~~~~~~~~~~~~iSh~s~~dv~~~~~qle~i~~q~~Gv~~~~~~~lg~~Ga~~~na~~~~~~~l~Pth 486 (1143)
T KOG4248|consen 407 TPAQGATTPGPAGTPIGSHPRVIRISHQSVEDVVRMHMQLEDIGTQLGGVPGARTAVLGSPGAGQTNAQQVPGFDLAPTH 486 (1143)
T ss_pred CcccCCcCCCCCCCCCcccccceeccchhhhhHHHHHHHHHhhhhcccCCcccccccccccccCCCccccCCCCcCCCcc
Confidence 11111 111111 1122222111111111112222222222222222233222211 111111 111
Q ss_pred ----ccccCCCCcCCCCCCccCccCCCCCCC--CcccccCCCCccccCCCcCCCCCCCCCCCCCchh-------------
Q 004252 163 ----EHAMQRPERTSDAGSALDSAHQQPEQG--GTRFQSNRPHSAFGIPTAISLGTLQPPVIPDSLT------------- 223 (765)
Q Consensus 163 ----~~~~~~~~~ts~~~g~~~~~~~q~~q~--G~r~~~~~~~~~~~~P~~~~l~~~~~~ViPDSLt------------- 223 (765)
...+.+.++.+... ..+++++. |.-.... +. ++.-+||...
T Consensus 487 q~~~~pd~P~i~p~ssg~-----e~~s~~q~~~glstd~S-----~~----------q~~s~~dt~~~t~Pv~~lr~~vp 546 (1143)
T KOG4248|consen 487 QVIARPDGPGIGPFSSGG-----EPNSPTQQGAGLSTDHS-----LA----------QMVSGPDTQLTTIPVLVLRGCVP 546 (1143)
T ss_pred eeecCCCCCCCCCCCCCC-----CCcChhhhccccccccc-----hh----------hhccCCCccceeeccchhhccch
Confidence 00111111111100 01111111 1111111 11 2222233333
Q ss_pred -hHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004252 224 -TLSQYLSQLRHEFDGIGRGGGNNTAATNSTIEGNTNSASHPGSLQEGLPMPASLAEVMQSTRQMLIEQSAECLHQLARQ 302 (765)
Q Consensus 224 -TLsqyl~rmr~~f~~~~r~g~~~~~~~~~~~~~~~~s~~~s~~~~~~lptp~~La~v~~~t~qlL~g~a~~~Ls~la~q 302 (765)
+|..++++|...++ .|++. .. +.+.+ .....+.++.|++|++|+.+|+|||+|..++|||+++++
T Consensus 547 ~~l~~~~~qv~~a~d----~~nq~--~~---n~q~p-----~~~~~e~i~rp~hla~Ll~st~qll~g~~A~~lSnis~~ 612 (1143)
T KOG4248|consen 547 GMLPPPGPQVASALD----TGNQA--DT---NGQAP-----GGPAEEPIARPPHLAELLFSTRQLLSGEPAGCLSNISGV 612 (1143)
T ss_pred hhcCCcchhHHHhhh----ccccc--cc---cccCC-----CCCccccCCCchHHHHHHHHHHHHHhcCCcccccCcccc
Confidence 34444444444442 11111 11 22222 244567899999999999999999999999999999999
Q ss_pred HhhccCCCChhhhhhhh--hHHHHHhHHHHHHHHHHHhhccceeEeecCCCCcccccccCCeeEeCCCCCCccccCCCCC
Q 004252 303 LENQANVTDPSLRTSIQ--TTAWSAGLLLHNLGAFLLELGRTTMTLRLGQTPSEAVVNAGPAVFISPSGPNPLMVQPLPF 380 (765)
Q Consensus 303 Le~~~~~tD~~~R~~iQ--~~a~~~G~~mq~LGa~LlELGRttmtLrmG~tP~ea~Vn~GPAvfIspsGPNpimVqP~P~ 380 (765)
|+++++++||..|+++| ++.++.|.+|+|||+.||||||||+|++||+| .+|+||||||||+|+||+|++|||-
T Consensus 613 lsd~vsvSdPsaral~Q~~t~~~qsgs~le~lG~~ll~lgpaTst~tmgpS----~~~ag~av~iSP~Gr~p~~~t~les 688 (1143)
T KOG4248|consen 613 LSDTVSVSDPSARALRQGMTRFLQSGSLLEHLGIPLLELGPATSTQTMGPS----EPDAGIAVFISPGGRRPNRRTPLES 688 (1143)
T ss_pred ccCCcccCCCcchhhhhhhhhhhhhcccccCCCCccccCCCccccccCCCC----ccCcCcccccCCCCCCCcccCcccc
Confidence 99999999999999999 99999999999999999999999999999999 8999999999999999999999999
Q ss_pred CCCCCccccCCcccCCCCC-CCCcccCCCCCceeeeeeecCc-----------cccCCCCccccccccCCCCCCCCCccc
Q 004252 381 QPGTSFGAIPMGSVQPGSG-LVNGRSAGFLPRRIDIQIRRGS-----------SMVGSNAIQEERSNTQQAPGQGNTATA 448 (765)
Q Consensus 381 q~g~~fg~~p~gs~~~~~~-~~~~~g~~~~pR~i~i~i~~g~-----------~~~~~~~n~~e~~~~~~~~~~~~~~~~ 448 (765)
+--.+|-.|=.+ +.+ |....|...++|+++|+|+.|. +..++++++.+...+.+....++++.
T Consensus 689 ~~p~l~Tsi~s~----~~~~~Ta~~g~~ta~a~ssv~~~agpa~i~~~~~vgn~~~~~~~~q~d~sgtt~s~~sttPS~- 763 (1143)
T KOG4248|consen 689 HSPELFTSIRSG----NHIVLTAPRGSLTARAGSSVSTEAGPAGIQRLSGVGNIFEPGADGQLDFSGTTDSPLSQTPSM- 763 (1143)
T ss_pred cCchhhcccccc----cccccccccccccccccccccccCCCCCceeeeccccccCCCCCCccCCCcccCCccccCCCC-
Confidence 988888754222 222 4445666677777777666653 33334444444333333333332211
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCeeeeeeeeeeeecccCCCCCCCCC-CCCCceeeeeccceeeeee--ccccCCCCC
Q 004252 449 SGTDNLGSQATTRNSDGSSSAGESGVRVVPVRTMVAPVPAPFGRLPSDS-SSNPVSLYYPVLGRFQHVA--SGLVSGEQG 525 (765)
Q Consensus 449 s~~~~~~~~~~s~~~~~~~~~~~~~~r~~p~rt~vaa~p~~~~r~ps~s-~~~~~gl~~pv~~r~q~~~--~~~~~~~~g 525 (765)
. .-| -+|.+.-++++|| ....|-.++|...+++|+- .+..+.
T Consensus 764 -------------p----------------~~t---~l~t~~~~~~~ds~lq~qm~~~~~dv~n~g~~Q~p~~ia~~--- 808 (1143)
T KOG4248|consen 764 -------------P----------------DVT---NLPTGHPQPLQDSTLQPQLRSFFPDVYNGGHVQIPTPIAIR--- 808 (1143)
T ss_pred -------------C----------------Ccc---cccCCCCCCCCchhhhhhhhhhchhhhccccccccchhhhh---
Confidence 1 111 2344555677777 7888999999999998542 222211
Q ss_pred CCCCCCCCCCCCccCCCCCCCccc-cccCCCCCCCCCCCCCCccccccCCCceeeeccccCCCCCCChhhhhhhhhhHHH
Q 004252 526 HQVSGEHHPAGLQTEQPSVPDSIG-QQNAEDPARNGSLANPNSRQQEASHSHSVNVGTLSTAGTQDNQESERQIRSGVLQ 604 (765)
Q Consensus 526 ~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~q 604 (765)
.++....+.+.|... .+..-...|..+.. ..+| .+-.+++.++|.|
T Consensus 809 ---------~a~~~~~~~l~~l~~e~~s~~a~~~~~ds~--------------------~~pg----~~l~sEr~N~i~q 855 (1143)
T KOG4248|consen 809 ---------MALDTLGTGLEELVRESFSLVAVQRGVDSI--------------------IRPG----LRLLSERFNSIAQ 855 (1143)
T ss_pred ---------hhhhhhccchhhhccccccccCcccCcCcc--------------------cccc----cchHHHHhhhhhh
Confidence 123334455666663 33333333332211 1222 5667789999999
Q ss_pred HHHhhCCCCceeecCCCcccccCCCCccccccccccccccCCCcccccCC------CcchhHHHH--HHHHHhhhhhccC
Q 004252 605 LLRNLFPGGEIHVENGGLHGTASDSVPEHAATFRDRVVSSTGSSAAEASA------TDEGIFLSN--LLHQIMPFISQHS 676 (765)
Q Consensus 605 ~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~deg~~~sn--~l~~imp~isq~~ 676 (765)
+++.|-|.| ....|....+.+..... +.++-....+.+|-++.- +-||.|.|. ++.+||+||.|.+
T Consensus 856 ~vkpltps~-~aag~~e~~nq~~pe~~-----a~t~l~lgv~n~E~~~rq~~~~~~~~~g~~~sl~~frqq~mq~l~~~v 929 (1143)
T KOG4248|consen 856 HVKPLTPSG-FAAGLLELCNQALPECL-----ALTLLCLGVANAELAPRQNGRIRRMSEGVNPSLVSFRQQMMQFLLQVV 929 (1143)
T ss_pred ccccCCccc-cchhhHHHHhccchhhH-----HHHHHhhcccchhhhhhhhcccccccccccccHHHHHHHHHHHHHHhh
Confidence 999998875 55556666666655543 456666667777666644 339999887 9999999999998
Q ss_pred CC
Q 004252 677 SA 678 (765)
Q Consensus 677 ~~ 678 (765)
+.
T Consensus 930 a~ 931 (1143)
T KOG4248|consen 930 AE 931 (1143)
T ss_pred hc
Confidence 64
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.71 E-value=2.6e-17 Score=139.28 Aligned_cols=73 Identities=34% Similarity=0.537 Sum_probs=71.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
|+|+||+.+|+++.++|++++||++||++|++++|+|+++|||+|+||.|+|+.+|++|+|+++++|||++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>PTZ00044 ubiquitin; Provisional
Probab=99.68 E-value=1.2e-16 Score=134.82 Aligned_cols=75 Identities=33% Similarity=0.469 Sum_probs=73.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|+++++|||++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999765
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.68 E-value=1e-16 Score=135.92 Aligned_cols=73 Identities=30% Similarity=0.357 Sum_probs=70.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
|+|+||+. ++++++|++++||++||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||++|+++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 78999984 88999999999999999999999999999999999999999999999999999999999999876
No 5
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.66 E-value=4.4e-16 Score=130.10 Aligned_cols=75 Identities=32% Similarity=0.533 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||+++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998765
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.65 E-value=5.4e-16 Score=141.07 Aligned_cols=78 Identities=31% Similarity=0.444 Sum_probs=75.2
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
...|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+||.|+|+.+|++|+|+++++|||++++++
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999999865
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.64 E-value=4.3e-16 Score=134.85 Aligned_cols=74 Identities=31% Similarity=0.488 Sum_probs=70.8
Q ss_pred EEEEEEeCCCcE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 19 IEIKIKTLDSQT-YTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 19 MqI~VKtLdGKT-ftLe-VspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
|+|+||+++|++ +.++ +++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|+++++|||++|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 6895 8999999999999999999999999999999999999999999999999999999864
No 8
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.64 E-value=5.7e-16 Score=129.44 Aligned_cols=75 Identities=37% Similarity=0.564 Sum_probs=73.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|||++++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999765
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.64 E-value=5.5e-16 Score=131.45 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=70.8
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 21 I~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
|+||+++|++++++|++++||.+||++|+++.|+|+++|+|+|+||.|+|+++|++|+|+++++|+|++++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999765
No 10
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.63 E-value=1e-15 Score=129.17 Aligned_cols=74 Identities=39% Similarity=0.641 Sum_probs=71.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGI--PPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
|+|+||+.+|+++.++|++++||.+||++|++++|+ ++++|||+|+|+.|+|+.+|++|+|++|++|+++++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999999999999999999999999999999 99999999999999999999999999999999999865
No 11
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.62 E-value=1e-15 Score=131.41 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=69.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
+|.|+||++.|+.+.++|++++||.+||++|+++.|+++++|||+|.||.|+|+++|++|||++|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999999999999974
No 12
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.62 E-value=1.6e-15 Score=125.58 Aligned_cols=72 Identities=61% Similarity=0.871 Sum_probs=70.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
|+|+||+++|+++.+++++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|++|++|||+.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 13
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.61 E-value=1.2e-15 Score=127.82 Aligned_cols=70 Identities=29% Similarity=0.456 Sum_probs=68.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 21 I~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+||+|+|+.+|++|+|+++++|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999875
No 14
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.61 E-value=1.8e-15 Score=130.34 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=72.0
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.|+|+||+..|+.+.++|++++||.+||++|+++.++++++|||+|+||.|+|+ +|++|||++|++|||+..+.+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~ 75 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEA 75 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccc
Confidence 489999999999999999999999999999999999999999999999999999 999999999999999998765
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.59 E-value=2.5e-15 Score=127.71 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=67.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 21 I~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
++||.++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|+++++|||++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999986
No 16
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.58 E-value=4.3e-15 Score=128.13 Aligned_cols=75 Identities=31% Similarity=0.414 Sum_probs=72.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRL--IF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
.|+|+||.+.|+++.++|++++||.+||++|+++.++++++||| +|+|+.|+|+++|++|||++|++|||++++.
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 49999999999999999999999999999999999999999999 8999999999999999999999999999853
No 17
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.56 E-value=8e-15 Score=123.31 Aligned_cols=71 Identities=30% Similarity=0.493 Sum_probs=67.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
|+|+||+..|+ +.+++++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|+++++|||++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 57999999997 589999999999999999999999999999999999999999999999999999999975
No 18
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.54 E-value=1.3e-14 Score=127.34 Aligned_cols=72 Identities=26% Similarity=0.336 Sum_probs=65.0
Q ss_pred cEEEEEEeCCCcEEE--EEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCcchhcccC--CCCCCEEEEee
Q 004252 18 TIEIKIKTLDSQTYT--LRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYH--VEDGHTLHMVV 89 (765)
Q Consensus 18 tMqI~VKtLdGKTft--LeVspsdTV~dLKeKIeektG--IPPeqQRLIF~GKvLkDdkTLSDYG--IkdGSTIHLVl 89 (765)
.|+|+||+++++++. +++++++||.+||++|++..+ .++++|||||+||+|+|+.+|++|. ++++++||||+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 378999999999955 555899999999999999874 5579999999999999999999996 99999999997
No 19
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.54 E-value=1.6e-14 Score=119.34 Aligned_cols=68 Identities=50% Similarity=0.761 Sum_probs=66.1
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 24 KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 24 KtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
|+++|+.+.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|.+|+|++|++|+|++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999999999999875
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.50 E-value=4.3e-14 Score=119.75 Aligned_cols=68 Identities=31% Similarity=0.516 Sum_probs=64.7
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-chhcccCCCCCCEEEEe
Q 004252 21 IKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 21 I~VKtL-dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDd-kTLSDYGIkdGSTIHLV 88 (765)
|+||+. +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ .+|++|+|++|++|||-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999988 68999999999999983
No 21
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.49 E-value=7e-14 Score=115.96 Aligned_cols=70 Identities=30% Similarity=0.455 Sum_probs=67.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
|+|+||+. |+.+.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+++|++|+|++|++|+|+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999996 99999999999999999999999999999999999999999999999999999999999974
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.48 E-value=9.2e-14 Score=118.81 Aligned_cols=69 Identities=26% Similarity=0.449 Sum_probs=66.3
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 26 LdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
++|+++.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||+++.++.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 579999999999999999999999999999999999999999999999999999999999999998763
No 23
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=1.3e-13 Score=150.06 Aligned_cols=76 Identities=29% Similarity=0.530 Sum_probs=73.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektG---IPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
|+|+||+++|++|.|+|++++||.+||++|+++.| +++++|||||+||+|+|+++|++|+|+++++|+|++++++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~ 79 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKT 79 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCC
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999999987664
No 24
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.45 E-value=4.5e-13 Score=117.73 Aligned_cols=80 Identities=20% Similarity=0.388 Sum_probs=76.5
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.....|+|+|++.+|+.+.++|.+++++..||++++++.|+++++|||+|+|+.|+|+.|+++|+++++++|++++++.+
T Consensus 7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEeccc
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999876
No 25
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.1e-14 Score=117.71 Aligned_cols=70 Identities=33% Similarity=0.561 Sum_probs=68.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEe
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLV 88 (765)
|.|+||++.||.+.++++++++|+.+|++|+++.||||.+|||+|.||.+.||++-++|++.-|++||++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999985
No 26
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.44 E-value=2.4e-13 Score=116.79 Aligned_cols=70 Identities=30% Similarity=0.443 Sum_probs=66.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe---CCeecCCcchhcccCCCCCCEEEEee
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC---RGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF---~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
|.|.||. .|++|.++|++++||.+||++|++++++|+++|||+| +||.|+|+.+|++|+|++|++|+|+-
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 5788987 7999999999999999999999999999999999996 99999999999999999999999974
No 27
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.41 E-value=5.4e-13 Score=147.58 Aligned_cols=78 Identities=36% Similarity=0.581 Sum_probs=73.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
..++|+||+.++ ++.+.|..+.||++||++|.+.+++++++++|||+||+|||+++|..|||+||+|||||+|....+
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~ 91 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRP 91 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCC
Confidence 569999999887 899999999999999999999999999999999999999999999999999999999999976544
No 28
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.5e-13 Score=133.17 Aligned_cols=77 Identities=36% Similarity=0.550 Sum_probs=74.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
|+|+|+++.++++.++|..++||..+|.+|++++|||+++|||||.|+.|+|+.+|+||+|+..+||||++++.+..
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999988753
No 29
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=6.5e-14 Score=129.06 Aligned_cols=76 Identities=36% Similarity=0.544 Sum_probs=74.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
|+++++++.||+++++|++++||..||.+|..++|+|++.|+|+|+||.|+|..||++|+|+..+|||+++|+.++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999886
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.35 E-value=1.8e-12 Score=103.90 Aligned_cols=64 Identities=53% Similarity=0.788 Sum_probs=61.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGH 83 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGS 83 (765)
|+|+||+.+ +.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+++|++|+|++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999998 7999999999999999999999999999999999999999999999999999875
No 31
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.22 E-value=1e-11 Score=108.28 Aligned_cols=54 Identities=35% Similarity=0.493 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHh--CCC-CCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 37 KQVPVPALKEQIASVT--GVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 37 psdTV~dLKeKIeekt--GIP-PeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
.++||.+||++|+++. +++ +++|||||+||+|+|+++|++|+|++|++|||+.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 5789999999999995 575 89999999999999999999999999999999864
No 32
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.21 E-value=3.2e-11 Score=104.31 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=59.6
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecC-CcchhcccCCC-CCCEEEEee
Q 004252 24 KTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLK-DDQLLSAYHVE-DGHTLHMVV 89 (765)
Q Consensus 24 KtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLk-DdkTLSDYGIk-dGSTIHLVl 89 (765)
|...|+++.++|++++||.+||++|++++|+|+++||| |+|+.|. |+++|++|+|+ +|+++||.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 44568999999999999999999999999999999999 9999985 66999999998 889999975
No 33
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.21 E-value=1.8e-11 Score=113.84 Aligned_cols=79 Identities=27% Similarity=0.368 Sum_probs=69.1
Q ss_pred CcEEEEEEeCCCcEEE-EEecCCCCHHHHHHHHHH-----HhCCC--CCCeEEEeCCeecCCcchhcccC------CCCC
Q 004252 17 TTIEIKIKTLDSQTYT-LRVDKQVPVPALKEQIAS-----VTGVL--SEQQRLICRGKVLKDDQLLSAYH------VEDG 82 (765)
Q Consensus 17 stMqI~VKtLdGKTft-LeVspsdTV~dLKeKIee-----ktGIP--PeqQRLIF~GKvLkDdkTLSDYG------IkdG 82 (765)
..++|++|..+|..+- ..+++++||.+||++|++ ++++| +++|||||.||+|+|++||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 5789999999997654 789999999999999994 44555 99999999999999999999999 7778
Q ss_pred CEEEEeeecCCCC
Q 004252 83 HTLHMVVRQPVPS 95 (765)
Q Consensus 83 STIHLVlRlpg~p 95 (765)
.|+||++|.+...
T Consensus 83 ~TmHvvlr~~~~~ 95 (113)
T cd01814 83 ITMHVVVQPPLAD 95 (113)
T ss_pred eEEEEEecCCCCC
Confidence 9999999976643
No 34
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.19 E-value=2.5e-11 Score=129.37 Aligned_cols=75 Identities=31% Similarity=0.537 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektG--IPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
|+|+||++++++|+++|.+++||.++|++|+...| +|+++|+|||+||+|+|+.++.+|+|+++..|.|++.+.+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999998876
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.18 E-value=7e-11 Score=95.85 Aligned_cols=68 Identities=50% Similarity=0.751 Sum_probs=64.6
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 22 KIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 22 ~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
.||..+|+.+.+++.+++||.+||++|++.+++++++|+|+|+||.|+|+.+|.+|+++++++|+++.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 36778899999999999999999999999999999999999999999999999999999999999875
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.10 E-value=3.5e-10 Score=94.66 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=66.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPP-eqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
|+|+|+..+|+.+.+.|.+++++..|+++++++.+++. +..+|+|+|+.|++++|+++|++++|++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999974
No 37
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.1e-09 Score=129.22 Aligned_cols=75 Identities=39% Similarity=0.654 Sum_probs=71.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
.+|+||++|.++.++.|...+||++||+.|.++..|+.+.|||||.||+|.|+|++.+|+| ||.+|||+-|.+..
T Consensus 3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred cceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 3499999999999999999999999999999999999999999999999999999999999 99999999996543
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.88 E-value=3.3e-09 Score=97.39 Aligned_cols=65 Identities=26% Similarity=0.293 Sum_probs=59.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-chhcccCCCCCCEEEEeeecCC
Q 004252 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 29 KTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDd-kTLSDYGIkdGSTIHLVlRlpg 93 (765)
+...++|++++||.+||.+|.++++++|++|+|+|.|+.|.|+ ++|++|||..+++|+|.++.|.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP~ 80 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEPI 80 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCCc
Confidence 3467889999999999999999999999999999999999655 8999999999999999997654
No 39
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.86 E-value=1.6e-08 Score=80.58 Aligned_cols=72 Identities=39% Similarity=0.602 Sum_probs=68.7
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 21 I~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
+++++..|+++.+++.+..+|..+|.+|+.+.+++.++|+|.|.|+.|.|+.+|.+|+|..+.+++|+.+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 678889999999999999999999999999999999999999999999999999999999999999998765
No 40
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.85 E-value=1.5e-08 Score=89.18 Aligned_cols=72 Identities=26% Similarity=0.499 Sum_probs=60.1
Q ss_pred EEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCCe-----ec-CCcchhcccCCCCCCEEEEeee
Q 004252 19 IEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRGK-----VL-KDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 19 MqI~VKtLd-GKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI-F~GK-----vL-kDdkTLSDYGIkdGSTIHLVlR 90 (765)
++|+|+... ......++++.+||.+||++++..+|+++..|||+ |.|+ .| +|+++|.+|++++|++||++-.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 566676633 34455669999999999999999999999999995 8887 45 6778999999999999999864
No 41
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.67 E-value=6.2e-08 Score=84.92 Aligned_cols=73 Identities=27% Similarity=0.497 Sum_probs=59.6
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-C------eec-CCcchhcccCCCCCCEEEEe
Q 004252 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-G------KVL-KDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 19 MqI~VKtLdG--KTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~-G------KvL-kDdkTLSDYGIkdGSTIHLV 88 (765)
++|+|..... +....++++++||.+||.+|+..+|++++.|+|.+. . ..| +|+++|.+|++++|++||+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 6788877655 488899999999999999999999999999999876 2 124 56789999999999999998
Q ss_pred eec
Q 004252 89 VRQ 91 (765)
Q Consensus 89 lRl 91 (765)
=..
T Consensus 82 D~~ 84 (87)
T PF14560_consen 82 DTN 84 (87)
T ss_dssp E-T
T ss_pred eCC
Confidence 543
No 42
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.66 E-value=1.2e-07 Score=88.15 Aligned_cols=77 Identities=32% Similarity=0.500 Sum_probs=60.0
Q ss_pred cEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhC-------CCCCCeEEEeCCeecCCcchhcccCCCCCC------
Q 004252 18 TIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTG-------VLSEQQRLICRGKVLKDDQLLSAYHVEDGH------ 83 (765)
Q Consensus 18 tMqI~VKtLdGK-TftLeVspsdTV~dLKeKIeektG-------IPPeqQRLIF~GKvLkDdkTLSDYGIkdGS------ 83 (765)
.++|+++..+|+ +..+.+++++||.+||+.|..... ..+...||||.||.|+|+++|++|++..|.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 588999999999 777999999999999999987542 244679999999999999999999987655
Q ss_pred EEEEeeecCCC
Q 004252 84 TLHMVVRQPVP 94 (765)
Q Consensus 84 TIHLVlRlpg~ 94 (765)
++||+++....
T Consensus 82 vmHlvvrp~~~ 92 (111)
T PF13881_consen 82 VMHLVVRPNAP 92 (111)
T ss_dssp EEEEEE-SSSS
T ss_pred EEEEEecCCCC
Confidence 79999986553
No 43
>PLN02560 enoyl-CoA reductase
Probab=98.62 E-value=7.3e-08 Score=103.10 Aligned_cols=69 Identities=26% Similarity=0.393 Sum_probs=61.9
Q ss_pred EEEEEEeCCCcEE---EEEecCCCCHHHHHHHHHHHhCC-CCCCeEEEeC---C----eecCCcchhcccCCCCCCEEEE
Q 004252 19 IEIKIKTLDSQTY---TLRVDKQVPVPALKEQIASVTGV-LSEQQRLICR---G----KVLKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 19 MqI~VKtLdGKTf---tLeVspsdTV~dLKeKIeektGI-PPeqQRLIF~---G----KvLkDdkTLSDYGIkdGSTIHL 87 (765)
|+|+||..+||.+ ++++++++||++||++|+++.++ ++++|||++. | +.|+|+++|+|||+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 7899998889887 79999999999999999999986 8999999983 3 4889999999999999998766
No 44
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.40 E-value=5.6e-07 Score=77.54 Aligned_cols=68 Identities=31% Similarity=0.353 Sum_probs=54.5
Q ss_pred EEEEEeCCCcEEE-EEec-CCCCHHHHHHHHHHHhC-CCCCCeEEE--eCCeecCCcchhcccCCCCCCEEEE
Q 004252 20 EIKIKTLDSQTYT-LRVD-KQVPVPALKEQIASVTG-VLSEQQRLI--CRGKVLKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 20 qI~VKtLdGKTft-LeVs-psdTV~dLKeKIeektG-IPPeqQRLI--F~GKvLkDdkTLSDYGIkdGSTIHL 87 (765)
+|.++....+.+. ++++ ++.||.+||+.|++..+ +++++|||. +.|+.|+|+.+|.+|||++|++||+
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 4566654413332 4444 88999999999999876 578999985 8899999999999999999999886
No 45
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.39 E-value=1.4e-06 Score=64.93 Aligned_cols=67 Identities=39% Similarity=0.544 Sum_probs=61.4
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 23 VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
|+..+++...+.+.+..|+.+||++|.++.+++++.++|+++|+.+++...+.+|++.++++|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444788899999999999999999999999999999999999999999988999999999999874
No 46
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.36 E-value=8.9e-07 Score=83.19 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=60.4
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCC-------CCCCEEEEeeec
Q 004252 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-------EDGHTLHMVVRQ 91 (765)
Q Consensus 21 I~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGI-------kdGSTIHLVlRl 91 (765)
|.||- ...+|.+++.++.||.+||++|+.....||++|||+-.+.+|+|+++|+|||+ +...+|-|.+|.
T Consensus 5 lmIrR-~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 5 LMIRR-HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred EEEEe-cceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 34443 34556789999999999999999999999999999977789999999999999 668899888885
No 47
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.12 E-value=9.5e-06 Score=71.55 Aligned_cols=73 Identities=22% Similarity=0.400 Sum_probs=65.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---C--eecCCcchhcccCCCCCCEEEEeeecC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR---G--KVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~---G--KvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
++|+||......+++.|+|..+|.++|++|....+++- .|||.|. | +.|.+.++|++|||..+-.|.|+..-+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p 78 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP 78 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence 58999999999999999999999999999999999886 9999995 3 357899999999999998888887643
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.92 E-value=1.8e-05 Score=69.90 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=44.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---eec--CCcchhcccCCCCCCEEEEe
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KVL--KDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G---KvL--kDdkTLSDYGIkdGSTIHLV 88 (765)
..|-|.|++.+| .+.+++++++|+.+||++|.+..+++.+.|.|..+- +.| .++++|+++||++||.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 468999999765 467899999999999999999999999999886432 345 46799999999999999874
No 49
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.0002 Score=66.17 Aligned_cols=79 Identities=18% Similarity=0.374 Sum_probs=73.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
...|+|+|+..++....+.|..+.++..|++..+++.|+.....|++|+|+.+++.+|=.+++.++|+.|.++..+.++
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 4678999998788888999999999999999999999999999999999999999999999999999999999876553
No 50
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=6.9e-05 Score=84.01 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=68.0
Q ss_pred cEEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 18 TIEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 18 tMqI~VKtLdGKTftLe-VspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
...|.||. .|+.|.++ ++.++|+..||.+++..+|++|++||+.++|+.++|+-.+...+|+++.+|+|+....
T Consensus 3 ~~~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 3 SDTVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred cceEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 35688887 68999987 9999999999999999999999999999999999999999999999999999997654
No 51
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00011 Score=79.18 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=61.1
Q ss_pred EEEEEEeC---CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 19 IEIKIKTL---DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 19 MqI~VKtL---dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
|.+.|+.. ....+.++|+.+..|.+||+.++++.|+|+++.|+||.||.|.|+.++..+.+..-+.+|+++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 44555543 234577899999999999999999999999999999999999999999999988888888884
No 52
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=3.7e-05 Score=66.40 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=62.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEe
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLV 88 (765)
+++.+...-||...+.+.+++||.++|+.|+.++|..++...|---+.+++|.-+|++|.|++|..+.|.
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 5666766679999999999999999999999999999998888766678899999999999999988775
No 53
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.00015 Score=68.08 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=37.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFav 143 (765)
..|+++++++.++++|.++|.+|+ ++|||+++|+|+|+.
T Consensus 8 ~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~ 47 (128)
T KOG0003|consen 8 LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (128)
T ss_pred eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcc
Confidence 678999999999999999999999 999999999999873
No 54
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.00021 Score=70.46 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=38.1
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHHHhh
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFavL~ 145 (765)
..++++++++.++++|+++|.+|| +||||++||||||+-..
T Consensus 8 l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~q 49 (156)
T KOG0004|consen 8 LTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (156)
T ss_pred ccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcc
Confidence 778899999999999999999999 99999999999999543
No 55
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.87 E-value=0.0021 Score=55.92 Aligned_cols=70 Identities=23% Similarity=0.370 Sum_probs=51.0
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC------eEEE-eCCeecCCcchhcccCCCCCCEEEE
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ------QRLI-CRGKVLKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeq------QRLI-F~GKvLkDdkTLSDYGIkdGSTIHL 87 (765)
.++|+|...+++.+.+.+..+.+|++|...|.+..+.+... -+|. -+|+.|+++++|++|+|.+|++|+|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 46788887557899999999999999999999988764322 3455 5689999999999999999999987
No 56
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.87 E-value=0.0083 Score=51.79 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEE--eCCeecCCc--chhcccCCCCCCEEEEe
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLI--CRGKVLKDD--QLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeq-QRLI--F~GKvLkDd--kTLSDYGIkdGSTIHLV 88 (765)
......|.||..+|+.+...+.+++||.+|.+.|..+...+... .+|+ |-.+.|.++ ++|.+.++....+|+|-
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 34578999999999999999999999999999999887777665 7776 567888543 69999999999998873
No 57
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=96.73 E-value=0.00016 Score=66.46 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=52.7
Q ss_pred ccCCCCCCEEEEeeecCCCCCCCCCCCCC--CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 76 AYHVEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 76 DYGIkdGSTIHLVlRlpg~psss~~~I~v--~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
.|++.+-.++|++++... .|++++ ..|+++.++|++++||.+||.+|+ ++|+|+++|+|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~-----~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~ 73 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYD-----TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN 73 (103)
T ss_pred ccccCCcceeEEeeccCC-----CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence 356667789999998654 465555 778899999999999999999999 99999999999976
No 58
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.00062 Score=58.29 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=38.7
Q ss_pred CCCCCCCcccccccCccccccccccc-CCCCCchhHHHHHHHhh
Q 004252 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (765)
Q Consensus 103 ~v~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFavL~ 145 (765)
++.+++.+.+.++++|.|+.+|..++ ++||||.+|||||+.-.
T Consensus 6 ktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkq 49 (70)
T KOG0005|consen 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQ 49 (70)
T ss_pred eeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccc
Confidence 34788999999999999999999999 99999999999997543
No 59
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.42 E-value=0.007 Score=56.16 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=50.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCCcchhcccCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDDQLLSAYHVE 80 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G--KvLkDdkTLSDYGIk 80 (765)
|-|.||- ...+|.++.+++.||-+||.+++....-|++.|||+.-. ++|+|.++|+|+|..
T Consensus 3 ~f~~VrR-~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRR-HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeee-cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4455554 345677899999999999999999999999999998743 678999999999763
No 60
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0008 Score=73.27 Aligned_cols=80 Identities=26% Similarity=0.338 Sum_probs=62.5
Q ss_pred CCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCCcchhcccCCC--CCCEEEEe
Q 004252 15 SETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVE--DGHTLHMV 88 (765)
Q Consensus 15 s~stMqI~VKtLdG--KTftLeVspsdTV~dLKeKIeektGIPP--eqQRLIF~GKvLkDdkTLSDYGIk--dGSTIHLV 88 (765)
.+..+.++||..+. |.+.|..+...||.+||..++..+.-.+ .+|||||.||.|.|...|.|+-+| +.+++||+
T Consensus 6 ~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 6 FEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred CCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 34567788888765 4556677788999999999998765433 779999999999999999888654 46789999
Q ss_pred eecCCC
Q 004252 89 VRQPVP 94 (765)
Q Consensus 89 lRlpg~ 94 (765)
+..+..
T Consensus 86 cnsk~v 91 (391)
T KOG4583|consen 86 CNSKEV 91 (391)
T ss_pred cCCCCC
Confidence 876543
No 61
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.20 E-value=0.032 Score=48.48 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=59.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---cchhcccCCCCCCEEEE
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI--F~GKvLkD---dkTLSDYGIkdGSTIHL 87 (765)
...+|.||..+|+.+...+..++||.+|.+.|....+......+|+ |-.|.|.+ +++|.+.++....+|.|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4678999999999999999999999999999976666666667776 55677853 47999999988888766
No 62
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.011 Score=54.30 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=69.4
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
...|.++|...++.++.+.|..+.+...|.+..+...|-..+..|++|+|+.++-++|-.|++.++++.|..+..+-+
T Consensus 22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvG 99 (103)
T COG5227 22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVG 99 (103)
T ss_pred ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhc
Confidence 346778887778999999999999999999999999999999999999999999999999999999998877765443
No 63
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.09 E-value=0.013 Score=53.93 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=43.9
Q ss_pred EEEEeCC-CcEEEEEec--CCCCHHHHHHHHHHHhC--CCCCCeEEEeCCeecCCcchhccc
Q 004252 21 IKIKTLD-SQTYTLRVD--KQVPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAY 77 (765)
Q Consensus 21 I~VKtLd-GKTftLeVs--psdTV~dLKeKIeektG--IPPeqQRLIF~GKvLkDdkTLSDY 77 (765)
|.|+..+ -..+.+++. .+.||..||++|.++.+ ..-.++||||+||.|.|...|...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 4455544 244667777 78999999999999883 444778999999999999887654
No 64
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.015 Score=60.36 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=59.5
Q ss_pred EEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 19 IEIKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 19 MqI~VKtL-dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
..++++.. .++.+.+.+...+|+.++|.++..+.++.+-.|+++|.|++|-|...|.+|+|+.|....|-+
T Consensus 146 ~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 146 PILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred cchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 33344333 467888999999999999999999999999999999999999999999999999995444433
No 65
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.77 E-value=0.068 Score=46.08 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=54.0
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---cchhcccCCCCCCEEEE
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI--F~GKvLkD---dkTLSDYGIkdGSTIHL 87 (765)
..+|.||..+|+.+...+..++||.+|.+-|.....- ....+|+ |-.|.+.| +++|.+.|+.+ +++.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 4678999999999999999999999999999876443 5556776 45677854 78999999984 44444
No 66
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.74 E-value=0.042 Score=49.09 Aligned_cols=70 Identities=21% Similarity=0.439 Sum_probs=57.9
Q ss_pred cEEEE--EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCCcchhcccCCCCCCEEEE
Q 004252 18 TIEIK--IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 18 tMqI~--VKtLdGKTftLeVspsdTV~dLKeKIeektGIPP-----eqQRLIF~GKvLkDdkTLSDYGIkdGSTIHL 87 (765)
.|+|+ ++.-+|++|.++++...+|+.|-..+.+...+.. ...|..-+++.|.++..|.+|+|.+|+.|.+
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 34555 4566799999999999999999999988766432 3468888999999999999999999998865
No 67
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=95.66 E-value=0.00052 Score=58.53 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=33.2
Q ss_pred CCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 GrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
+++++++|++++||++||.+|+ ++|+|+++|+|+|+
T Consensus 8 ~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 8 QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence 3567899999999999999999 99999999999987
No 68
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.54 E-value=0.057 Score=54.15 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=59.8
Q ss_pred EEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe-EEEeC-Ceec--CCcchhcccCCCCC----CEEE
Q 004252 19 IEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ-RLICR-GKVL--KDDQLLSAYHVEDG----HTLH 86 (765)
Q Consensus 19 MqI~VKtLdG----KTftLeVspsdTV~dLKeKIeektGIPPeqQ-RLIF~-GKvL--kDdkTLSDYGIkdG----STIH 86 (765)
|+|+|++++| .++.+.+..+.||.+|+.+|.+.++++...| .|.+. ++.| .++..++.+.-.+. -+|+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 5888999999999999999999999999885 45553 4555 56667777654443 4788
Q ss_pred EeeecCCC
Q 004252 87 MVVRQPVP 94 (765)
Q Consensus 87 LVlRlpg~ 94 (765)
|.+++.++
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 88888775
No 69
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.47 E-value=0.041 Score=47.49 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=47.0
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEE
Q 004252 25 TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 25 tLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHL 87 (765)
..+++.+.+.|.++.++.++-++..+++++.+++-.|.|++|.|+-+.++.-.|+.+|++|.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 457899999999999999999999999999999999999999999999999999999998865
No 70
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.42 E-value=0.11 Score=45.55 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=57.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecCC---cchhcccCCCCCCEEEE
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLKD---DQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI--F~GKvLkD---dkTLSDYGIkdGSTIHL 87 (765)
...+|.||..+|+.+...+..++||.+|++.|....+.. ....|+ |--|.+.+ +++|.+.|+.+..+|+|
T Consensus 3 ~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 3 TETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred cEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 357899999999999999999999999999998765432 556776 56788853 48999999998888876
No 71
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.16 E-value=0.13 Score=45.53 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=54.6
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEE--eCCeecC-CcchhcccCCCCCCEE
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLI--CRGKVLK-DDQLLSAYHVEDGHTL 85 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIP-PeqQRLI--F~GKvLk-DdkTLSDYGIkdGSTI 85 (765)
..+|.||..||+.+..++..++||.+|++.|....+-+ .....|. |-.|.|. ++.||.|.|+.+...+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 56889999999999999999999999999999875432 3456676 6688885 4689999999865443
No 72
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=95.14 E-value=0.0014 Score=56.23 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=35.8
Q ss_pred CCCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 104 PGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 104 v~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
...|+++.+++++++||.++|.+|+ .+|+|+++|+|+|+
T Consensus 5 ~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~ 44 (70)
T cd01794 5 LSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS 44 (70)
T ss_pred cCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 3568889999999999999999999 99999999999875
No 73
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=94.78 E-value=0.052 Score=57.78 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=51.8
Q ss_pred EEEEEEeCCC-cEEE-EEecCCCCHHHHHHHHHH-HhCCCCCCeEEE----eCCeecCCcchhcccCCCCCCEEEE
Q 004252 19 IEIKIKTLDS-QTYT-LRVDKQVPVPALKEQIAS-VTGVLSEQQRLI----CRGKVLKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 19 MqI~VKtLdG-KTft-LeVspsdTV~dLKeKIee-ktGIPPeqQRLI----F~GKvLkDdkTLSDYGIkdGSTIHL 87 (765)
|+|+++...+ -.++ .+.+...||.|++++|.. +..+.+.++|+. -+||.|.|+.+|++|+..++.+|.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 6778877654 2344 567788999999977755 456777555544 4699999999999999999977655
No 74
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.68 E-value=0.23 Score=44.56 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=58.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecC--------CcchhcccCCCCCCEEE
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLK--------DDQLLSAYHVEDGHTLH 86 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G--KvLk--------DdkTLSDYGIkdGSTIH 86 (765)
..++|.||..+|+.+.-++..++||.+|.+-|.. .+..++..+|+++= |.+. .+.||.+.|+.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 4689999999999999999999999999999964 55667888998653 7775 35799999999887776
Q ss_pred E
Q 004252 87 M 87 (765)
Q Consensus 87 L 87 (765)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 75
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.098 Score=54.45 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=57.4
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-eCC--e---ec-CCcchhcccCCCCCCEEEEeee
Q 004252 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-CRG--K---VL-KDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 19 MqI~VKtLdGK-TftLeVspsdTV~dLKeKIeektGIPPeqQRLI-F~G--K---vL-kDdkTLSDYGIkdGSTIHLVlR 90 (765)
++|+|.+..-+ ....++.+++||.+||+|++.++|.+++.++|. |+| | .| +++..|..|+..+|..||++=.
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 45666543222 234567899999999999999999999999985 555 2 35 4668999999999999999865
Q ss_pred cCC
Q 004252 91 QPV 93 (765)
Q Consensus 91 lpg 93 (765)
...
T Consensus 82 ~~~ 84 (234)
T KOG3206|consen 82 NAQ 84 (234)
T ss_pred Ccc
Confidence 443
No 76
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=94.15 E-value=0.0026 Score=54.18 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+++.++|++++||++||.+++ ++|+|+++|+|+|+
T Consensus 8 ~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 8 LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 467888899999999999999999 99999999999976
No 77
>PTZ00044 ubiquitin; Provisional
Probab=93.93 E-value=0.0029 Score=53.67 Aligned_cols=38 Identities=8% Similarity=0.241 Sum_probs=35.2
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+++.+++.+++||+.||.+++ ..|+|++.|||+|+
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 567888999999999999999999 99999999999975
No 78
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.72 E-value=0.51 Score=41.97 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=60.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CcchhcccCCCCCCEEEEe
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI--F~GKvLk---DdkTLSDYGIkdGSTIHLV 88 (765)
...+|.||..+|+.+.-++..++++.+|.+-|..+ |.+++..+|+ |--|.+. .+.+|.+.|+....+|.|-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 46889999999999999999999999999999875 7778888887 5577774 3479999999988888763
No 79
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=93.66 E-value=0.0053 Score=52.40 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=34.3
Q ss_pred CCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 106 tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
.|+++.++++++.||++||.+|+ .+|+|+++|+|+|+
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~ 45 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYN 45 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 57788899999999999999999 99999999999975
No 80
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=93.64 E-value=0.0044 Score=52.92 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=35.6
Q ss_pred CCCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 104 PGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 104 v~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
+..|+++++++++++||++||.+|+ ++|+|+++|+|+|+
T Consensus 5 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 44 (74)
T cd01810 5 NDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFE 44 (74)
T ss_pred CCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 3568888999999999999999999 99999999999975
No 81
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.35 E-value=0.66 Score=41.92 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=62.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CcchhcccCCCCCCEEEEee
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI--F~GKvLk---DdkTLSDYGIkdGSTIHLVl 89 (765)
...-+|.||..+|+.+.-.+..++++.+|...|.. .|.+++..+|+ |--|++. .+.+|.+.|+....+|.|--
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 34568999999999999999999999999999988 57888999998 5567773 34899999999999988743
No 82
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=92.61 E-value=0.0073 Score=50.87 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=35.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+++.++++++++|+.||.+|+ ++|+|+++|+|+|+
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 567888999999999999999999 99999999999876
No 83
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=92.39 E-value=0.013 Score=51.14 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=33.5
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..+.+.++.+.+++||+.||.+++ ++|+|++.||| |.
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~ 47 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VI 47 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-Ec
Confidence 557788899999999999999999 99999999999 64
No 84
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=91.93 E-value=0.012 Score=51.08 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=34.1
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+++.+++||++||.+|+ +.|+|+++|||+|.
T Consensus 9 ~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~ 47 (73)
T cd01791 9 RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW 47 (73)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC
Confidence 456778889999999999999998 77999999999987
No 85
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=91.43 E-value=0.015 Score=50.12 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=34.9
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+++.+++++++||++||.+|+ ..|+|++.|+|+|.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~ 43 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE 43 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 457888999999999999999999 89999999999986
No 86
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=90.81 E-value=0.018 Score=50.35 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=32.6
Q ss_pred CCCCC-ccc-ccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRS-HGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrt-itl-eVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+. +.+ .+.+++||+.||.+|+ ++|+|+++|||+|.
T Consensus 8 ~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~ 48 (78)
T cd01797 8 MDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYR 48 (78)
T ss_pred CCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC
Confidence 45665 467 4889999999999999 99999999999985
No 87
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=89.64 E-value=1.5 Score=37.29 Aligned_cols=68 Identities=26% Similarity=0.281 Sum_probs=52.2
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe----CC--eecCCcchhcccCCC--CCCEEEEeee
Q 004252 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC----RG--KVLKDDQLLSAYHVE--DGHTLHMVVR 90 (765)
Q Consensus 23 VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeq-QRLIF----~G--KvLkDdkTLSDYGIk--dGSTIHLVlR 90 (765)
|+.+||...+++|+++.|+.+|-++|+++.++...+ .-|.| +| .-|+.+++|.++... ...++++.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 678999999999999999999999999999986533 45777 22 357888999999777 3445555443
No 88
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=89.18 E-value=0.024 Score=47.55 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++++++.+|+.||.+++ +.|+|++.|||+|+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~ 46 (76)
T cd01806 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC
Confidence 456778889999999999999999 88999999999975
No 89
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=88.54 E-value=0.026 Score=49.14 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=34.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++++++.||+++|.+|+ +.|+++++|||+|+
T Consensus 9 ~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~ 47 (78)
T cd01804 9 TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHR 47 (78)
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC
Confidence 456778899999999999999998 88999999999976
No 90
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=88.46 E-value=0.041 Score=47.70 Aligned_cols=37 Identities=8% Similarity=-0.010 Sum_probs=33.5
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIF 141 (765)
..++.+.++|.+++||++||..++ ..|+|+++|+|++
T Consensus 7 ~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 7 WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 356778889999999999999999 8999999999997
No 91
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=88.32 E-value=0.74 Score=40.62 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=46.1
Q ss_pred ecCCCCHHHHHHHHHHHhC-CCCCCeEEEeCCeecCCcchhccc-CCCCCCEEEEeee
Q 004252 35 VDKQVPVPALKEQIASVTG-VLSEQQRLICRGKVLKDDQLLSAY-HVEDGHTLHMVVR 90 (765)
Q Consensus 35 VspsdTV~dLKeKIeektG-IPPeqQRLIF~GKvLkDdkTLSDY-GIkdGSTIHLVlR 90 (765)
|+++++|.++|+.+..... ..--...|.++|+.|+|...|+++ +++++++|.|+.+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5688999999999987644 333456788999999999999988 5899999999865
No 92
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=87.73 E-value=0.035 Score=46.50 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.1
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++++++++|+.||.+++ ..|+|++.|+|+|+
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~ 46 (76)
T cd01803 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_pred CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 457778899999999999999999 89999999999874
No 93
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=86.28 E-value=4.1 Score=34.62 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=42.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC----CCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 30 TYTLRVDKQVPVPALKEQIASVTGV----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 30 TftLeVspsdTV~dLKeKIeektGI----PPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
...++++...||.+|++++..+++- ......+..+|+..+ .++-|++|+.|.++-..
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv 77 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPV 77 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCC
Confidence 4567777789999999999887542 234456677888877 45679999999998543
No 94
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=86.12 E-value=3.9 Score=35.57 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=46.5
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC--CCeEEEeCCeecCCcchhcccCCCCCCEEEE
Q 004252 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 18 tMqI~VKtLd------G-KTftLeVspsdTV~dLKeKIeektG-IPP--eqQRLIF~GKvLkDdkTLSDYGIkdGSTIHL 87 (765)
+|+|+|+... | +...+++....||.+|++.+..+.. +.. ..-.+..+|+... .++-|++|++|.+
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai 75 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAI 75 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEE
Confidence 4788888763 3 4566788888999999999977641 111 1123556777654 3556889999998
Q ss_pred eee
Q 004252 88 VVR 90 (765)
Q Consensus 88 VlR 90 (765)
+..
T Consensus 76 ~Pp 78 (82)
T PLN02799 76 IPP 78 (82)
T ss_pred eCC
Confidence 753
No 95
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=86.07 E-value=0.048 Score=46.27 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=34.2
Q ss_pred CCCCCcccccccCccccccccccc-CCCC--CchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGV--PSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGI--PpdqQRLIFa 142 (765)
..|+.+.+++.+++||..||..++ .+|+ |+++|+|+|+
T Consensus 8 ~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~ 48 (77)
T cd01805 8 LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS 48 (77)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC
Confidence 456788899999999999999999 8999 9999999975
No 96
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=85.96 E-value=1.3 Score=49.54 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=59.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc--chhcccCCCCCCEEEEeeecCC
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD--QLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDd--kTLSDYGIkdGSTIHLVlRlpg 93 (765)
..+++.+.|..+..+..|+..++..+|++.+..-|+|+++.|.++ ..|..||+++++++.+-.+...
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d 79 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSD 79 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCC
Confidence 678889999999999999999999999999999999999999755 6899999999999887655433
No 97
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=85.49 E-value=0.084 Score=45.91 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=33.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHH--HH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQI--VS 141 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRL--IF 141 (765)
..|+.+.++++++.||.+||..|+ +.|+|+++||| +|
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~ 49 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD 49 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc
Confidence 457778889999999999999998 88999999999 65
No 98
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=84.69 E-value=0.1 Score=43.44 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=32.5
Q ss_pred CCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 GrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
|+.+.+++.++.||+.||.+++ ..|+|++.|+|+|.
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 5667788999999999999999 89999999999965
No 99
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=84.64 E-value=8.3 Score=37.55 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=54.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC--C----eecCCcchhcccCCC-CCCEEEEe
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR--G----KVLKDDQLLSAYHVE-DGHTLHMV 88 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeq-QRLIF~--G----KvLkDdkTLSDYGIk-dGSTIHLV 88 (765)
..+.|.|..+||....+.+++.+|+.++.+.|+++.|+.... --|.+. + ..|+...+|.+...+ ....+++-
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 357889999999999999999999999999999999995422 234432 1 346667777777655 33455555
Q ss_pred eec
Q 004252 89 VRQ 91 (765)
Q Consensus 89 lRl 91 (765)
.|.
T Consensus 82 ~r~ 84 (207)
T smart00295 82 VKF 84 (207)
T ss_pred EEE
Confidence 543
No 100
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=84.60 E-value=3.5 Score=37.39 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=38.2
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004252 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (765)
Q Consensus 20 qI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GK 66 (765)
-|+|..- + ++.++|.+..+..+|+++|.++.++|+++.+|.|+..
T Consensus 4 vvKV~f~-~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 4 VVKVHFK-Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEEE-E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 3445442 2 8899999999999999999999999999999999753
No 101
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=83.33 E-value=0.077 Score=44.02 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=34.2
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+.++++++|..||.+++ ..|+|++.|+|+|+
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (72)
T cd01809 8 LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS 46 (72)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 456778899999999999999999 89999999999974
No 102
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=83.20 E-value=0.36 Score=52.75 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEec---C--CCCHHHHHHHHHH----------HhCCCCCCeE-----EEeCCeecCCc
Q 004252 12 AESSETTIEIKIKTLDSQTYTLRVD---K--QVPVPALKEQIAS----------VTGVLSEQQR-----LICRGKVLKDD 71 (765)
Q Consensus 12 ae~s~stMqI~VKtLdGKTftLeVs---p--sdTV~dLKeKIee----------ktGIPPeqQR-----LIF~GKvLkDd 71 (765)
..++...|.|++|.+..-.+.+.+. + +.+|.++|+.+++ ++++|.+..+ |+|+-|.+.|.
T Consensus 72 aPgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ 151 (309)
T PF12754_consen 72 APGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDS 151 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCc
Confidence 4455678999999987766655432 2 5889999999999 8999999988 99999999999
Q ss_pred chhcccC
Q 004252 72 QLLSAYH 78 (765)
Q Consensus 72 kTLSDYG 78 (765)
++|.|..
T Consensus 152 ktl~e~l 158 (309)
T PF12754_consen 152 KTLAEVL 158 (309)
T ss_dssp -------
T ss_pred CcHHHHH
Confidence 9998874
No 103
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=82.88 E-value=4.8 Score=34.50 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=39.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G 65 (765)
++|+++. ++..+.+.+....|..+|+.+|.+++++.....+|-|..
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 5677776 678889999999999999999999999887788888864
No 104
>PRK06437 hypothetical protein; Provisional
Probab=81.90 E-value=8.5 Score=33.05 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=44.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
.++...++++...||.+|-++ .+++++...+..+|+.+. .++-+++|+.|.++--
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEV 63 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEec
Confidence 557778888888899887755 478888888899999997 5677889999988753
No 105
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=81.60 E-value=7.6 Score=34.91 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=49.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCCcchhcc----cCCCCCCEEEEe
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSA----YHVEDGHTLHMV 88 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPP-eqQRLIF~GK-----vLkDdkTLSD----YGIkdGSTIHLV 88 (765)
|+|++.. ++..+.+.+.++.+..+|+++|.+++++.. ....|-|..- .|..+.-|.+ |.....++|.|.
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~ 79 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLL 79 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEE
Confidence 4566654 678899999999999999999999999865 5667777542 2344444444 444455677666
Q ss_pred ee
Q 004252 89 VR 90 (765)
Q Consensus 89 lR 90 (765)
+.
T Consensus 80 v~ 81 (82)
T cd06407 80 VH 81 (82)
T ss_pred ee
Confidence 53
No 106
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=81.59 E-value=11 Score=32.34 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=45.6
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
+|+|++... .+...++++...||.+|.+++ +++++.-.+..+|+.+. .++-+++|+.|.++.-
T Consensus 4 mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 4 MIRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEcc
Confidence 356666331 235677888889999988765 67777777788999884 3667899999988753
No 107
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=81.16 E-value=0.16 Score=45.12 Aligned_cols=39 Identities=5% Similarity=-0.062 Sum_probs=35.3
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFav 143 (765)
..|+.+.++|+++++++.||..+. ++|+++++|||+|+.
T Consensus 19 ~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G 58 (87)
T cd01763 19 QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDG 58 (87)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECC
Confidence 457788899999999999999988 999999999999974
No 108
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=80.20 E-value=9.9 Score=31.92 Aligned_cols=57 Identities=7% Similarity=0.220 Sum_probs=41.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
+|+.+.+ + ..||.+|.+.+ ++.++...+-.+++.+. .....++-+++||.|-++--.
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V 62 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPM 62 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEec
Confidence 6787776 3 45898888765 56666666778888876 344557779999999987543
No 109
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=78.97 E-value=8.8 Score=35.42 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=45.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----C-eecC-CcchhcccCCCCCCEEEEeeecCC
Q 004252 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G-KVLK-DDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 29 KTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~----G-KvLk-DdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
..++..+++.+||..+++.+.+.+.| .+.-||--. + ..|. .+.||.|.+|.+|.+|.+=.|...
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~D 83 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNED 83 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TT
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccC
Confidence 46778899999999999999999999 666787532 2 2454 557999999999999988777654
No 110
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=78.09 E-value=0.1 Score=43.32 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=34.6
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|.++++|..||..+. ..|+|++.|+|+|.
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~ 41 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN 41 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeee
Confidence 457788999999999999999999 88999999999986
No 111
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=77.73 E-value=0.17 Score=42.86 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=31.1
Q ss_pred CCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 106 tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
.|+ ..++++++.||+.||.+|+ ++|+++++|||+|+
T Consensus 9 ~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~ 45 (71)
T cd01808 9 KDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA 45 (71)
T ss_pred CCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 344 4689999999999999998 88999999999865
No 112
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=77.51 E-value=6 Score=36.22 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=39.3
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---CCeEEEeC
Q 004252 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---EQQRLICR 64 (765)
Q Consensus 20 qI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPP---eqQRLIF~ 64 (765)
.+++|...|+.+.+.+.++..+.+|++.|.++.|+.. ....|.|-
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 4678899999999999999999999999999999887 46677773
No 113
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=76.01 E-value=7.3 Score=33.33 Aligned_cols=56 Identities=14% Similarity=0.377 Sum_probs=40.3
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
|+|+| +|+ .+++....|+.+||+++... .=.+||+|=..+++ +-+++||.|.|+.|
T Consensus 1 M~I~v---N~k--~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d-----~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKV---NEK--EIETEENTTLFELRKESKPD------ADIVILNGFPTKED-----IELKEGDEVFLIKK 56 (57)
T ss_pred CEEEE---CCE--EEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCc-----cccCCCCEEEEEeC
Confidence 45555 445 35667788999999987653 23779999888774 55677899988764
No 114
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=75.32 E-value=14 Score=42.42 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=57.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCC----CCCCe--EEE-eCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGV----LSEQQ--RLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGI----PPeqQ--RLI-F~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
.+|+|... .+...+-+..+..|.||-..|-+..+- +.... +|. -+|..|+.+++|.+.+|.||++++|..+.
T Consensus 3 ~RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 3 CRVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 46777764 456778888899999999999887663 22222 333 36889999999999999999999999765
Q ss_pred CCCC
Q 004252 92 PVPS 95 (765)
Q Consensus 92 pg~p 95 (765)
...+
T Consensus 82 ~~~p 85 (452)
T TIGR02958 82 ATEP 85 (452)
T ss_pred CCCC
Confidence 4433
No 115
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=74.65 E-value=7.2 Score=36.06 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=45.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 30 TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 30 TftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
.+...++-..++..||+.++.+.++.-+.-.+...+..|+++++|-|-+|+-..++.+.+...
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~ 66 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIK 66 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEE
Confidence 345577788999999999999999999999998899889999999999999888888877643
No 116
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=74.60 E-value=0.31 Score=43.35 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=23.0
Q ss_pred Cccccccccccc-C--CCCC-chhHHHHHH
Q 004252 117 SVVIETFNLPDR-G--DGVP-SEISQIVSA 142 (765)
Q Consensus 117 SdTIesVKv~Iq-k--EGIP-pdqQRLIFa 142 (765)
++||+.||.+|+ + +|++ +++|||||+
T Consensus 20 ~~TV~~LK~kI~~~~~egi~~~dqQrLIy~ 49 (75)
T cd01815 20 GYQVSTLKQLIAAQLPDSLPDPELIDLIHC 49 (75)
T ss_pred cCcHHHHHHHHHHhhccCCCChHHeEEEeC
Confidence 689999999998 5 6785 999999987
No 117
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=74.06 E-value=0.45 Score=44.85 Aligned_cols=34 Identities=6% Similarity=-0.010 Sum_probs=31.4
Q ss_pred CcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 109 titleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..++.|.+++||+++|..|+ +.++++++|+|+++
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d 50 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID 50 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec
Confidence 34678999999999999999 99999999999998
No 118
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=73.79 E-value=24 Score=30.58 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=40.9
Q ss_pred EEEEEecCC-CCHHHHHHHHHHHhC-CC--CCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 30 TYTLRVDKQ-VPVPALKEQIASVTG-VL--SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 30 TftLeVsps-dTV~dLKeKIeektG-IP--PeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
...+++... .||.+|++.+.+++. +- ....++..+++...+ +..|++|+.|.++-..
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppv 77 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPV 77 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCC
Confidence 346788766 899999999988864 11 123456667777664 5678999999988543
No 119
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=73.06 E-value=12 Score=31.99 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=39.1
Q ss_pred cEEEEEEeCCCcEEE-EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004252 18 TIEIKIKTLDSQTYT-LRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (765)
Q Consensus 18 tMqI~VKtLdGKTft-LeVspsdTV~dLKeKIeektGIPPeqQRLIF~G 65 (765)
+++|+++.- +..+. +.+....+..+|+++|.++++.+....+|.|..
T Consensus 1 t~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 467788764 55555 899999999999999999999998888998864
No 120
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=72.88 E-value=20 Score=31.47 Aligned_cols=59 Identities=8% Similarity=0.137 Sum_probs=41.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCC-----CC------CCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 29 QTYTLRVDKQVPVPALKEQIASVTGV-----LS------EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 29 KTftLeVspsdTV~dLKeKIeektGI-----PP------eqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
....+++. ..||.+|++.+.+++.- -. ....+..+|+..+++.. +-|++|+.|.++...
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~Ppv 85 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPV 85 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCC
Confidence 34667776 89999999999887641 11 23456667877764432 678999999988544
No 121
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.77 E-value=0.4 Score=53.63 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=34.5
Q ss_pred CCCCCcccccccCccccccccccc-CCC---CCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDG---VPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEG---IPpdqQRLIFa 142 (765)
..|+++.++|++++||.+||.+|+ +.| +|+++|+|||+
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~ 49 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS 49 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC
Confidence 567888999999999999999998 666 99999999998
No 122
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=72.42 E-value=0.43 Score=42.74 Aligned_cols=38 Identities=0% Similarity=-0.121 Sum_probs=28.8
Q ss_pred CCCCC--cccccccCccccccccccc--CC-CCCchhHHHHHH
Q 004252 105 GTSRS--HGSHVAPSVVIETFNLPDR--GD-GVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrt--itleVspSdTIesVKv~Iq--kE-GIPpdqQRLIFa 142 (765)
..++. +.+++++++||..+|.++. .. ..++++|||||+
T Consensus 9 ~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~ 51 (79)
T cd01790 9 PNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS 51 (79)
T ss_pred CCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc
Confidence 34455 4556689999999999997 22 355899999987
No 123
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.97 E-value=5.8 Score=44.30 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=45.5
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCeEEEe---CCeec-----CCcchhcccCCCCCCEEEEe
Q 004252 34 RVDKQVPVPALKEQIASVTGVLSEQQRLIC---RGKVL-----KDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 34 eVspsdTV~dLKeKIeektGIPPeqQRLIF---~GKvL-----kDdkTLSDYGIkdGSTIHLV 88 (765)
-|+-+-||.+||+++..+.|+.+.++||+| .||.- +.++.|..|+|++|+.+.+-
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred EEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 455578999999999999999999999998 45543 34578999999999988764
No 124
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=71.85 E-value=9.8 Score=37.07 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=43.6
Q ss_pred EEE-EecC-CCCHHHHHHHHHHH----hCCCC------CCeEEEeCC-----------------eec---CCcchhcccC
Q 004252 31 YTL-RVDK-QVPVPALKEQIASV----TGVLS------EQQRLICRG-----------------KVL---KDDQLLSAYH 78 (765)
Q Consensus 31 ftL-eVsp-sdTV~dLKeKIeek----tGIPP------eqQRLIF~G-----------------KvL---kDdkTLSDYG 78 (765)
+.+ .|+. +.||.+||+.+.++ .|++| +..||+..- ..| +++++|.+||
T Consensus 17 ~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~g 96 (122)
T PF10209_consen 17 LVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELG 96 (122)
T ss_pred eeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcC
Confidence 334 4786 89999999888765 34555 446666531 356 6778899999
Q ss_pred CCCCCEEEEeee
Q 004252 79 VEDGHTLHMVVR 90 (765)
Q Consensus 79 IkdGSTIHLVlR 90 (765)
|++...|-+..+
T Consensus 97 v~nETEiSfF~~ 108 (122)
T PF10209_consen 97 VENETEISFFNM 108 (122)
T ss_pred CCccceeeeeCH
Confidence 999999888765
No 125
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=71.18 E-value=30 Score=31.37 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=47.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
.....|+|+| +|+.+.+ +...||.+|-+. .+++++..-+-++|..+. ......+-+++||.|.++--.
T Consensus 14 ~~~~~m~I~V---NG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~V 81 (84)
T PRK06083 14 AAMVLITISI---NDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAI 81 (84)
T ss_pred CCCceEEEEE---CCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEe
Confidence 3444566655 6776555 567788877664 467777777889999883 345667779999999887543
No 126
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=68.34 E-value=37 Score=39.37 Aligned_cols=78 Identities=10% Similarity=0.165 Sum_probs=63.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEE--EeCCeecCC---cchhcccCCCCCCEEEEeee
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRL--ICRGKVLKD---DQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRL--IF~GKvLkD---dkTLSDYGIkdGSTIHLVlR 90 (765)
.+...|.|+..||..|+-.+..++-+..+|+.+..+-++.....-| -|--|+..| +++|.++.+.+...|.|+-+
T Consensus 312 ~d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk 391 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPK 391 (506)
T ss_pred cceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEec
Confidence 3568899999999999999998999999999999887777666655 366777743 37999999999888888877
Q ss_pred cCC
Q 004252 91 QPV 93 (765)
Q Consensus 91 lpg 93 (765)
..+
T Consensus 392 ~r~ 394 (506)
T KOG2507|consen 392 KRA 394 (506)
T ss_pred CCc
Confidence 655
No 127
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=68.12 E-value=9.6 Score=43.17 Aligned_cols=68 Identities=21% Similarity=0.198 Sum_probs=52.0
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--eCCeecCC-cchhcccCCCCCCEE
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--CRGKVLKD-DQLLSAYHVEDGHTL 85 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPe-qQRLI--F~GKvLkD-dkTLSDYGIkdGSTI 85 (765)
+=.|.||..||+.+.+.++...||.+|+..|.....-.+. .+-|+ |--|.|.| +.||++-|+.+-..|
T Consensus 305 tTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 305 TTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred cceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 3457777789999999999999999999999987654443 45555 44688865 589999999875443
No 128
>smart00455 RBD Raf-like Ras-binding domain.
Probab=67.45 E-value=14 Score=32.20 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=40.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004252 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (765)
Q Consensus 21 I~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G 65 (765)
+.|-..+|+...+.+.+..||.++-+++.++.|+.++.-.|...|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 356678999999999999999999999999999999988888754
No 129
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=65.45 E-value=15 Score=43.34 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=49.0
Q ss_pred CCcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEe--C--Ce-ecCCc---------
Q 004252 16 ETTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLIC--R--GK-VLKDD--------- 71 (765)
Q Consensus 16 ~stMqI~VKtLd--GKTftLeVspsdTV~dLKeKIeekt--GIP------PeqQRLIF--~--GK-vLkDd--------- 71 (765)
-.++.|+|-..+ ...+.++|-..|||.++|+||-+.. +.| +++.-|.+ + |+ .|+|.
T Consensus 187 ~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 187 YKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred eEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCC
Confidence 456778865443 3557889999999999999997642 222 24444443 2 23 45432
Q ss_pred ----chhcccCCCCCCEEEEeeecC
Q 004252 72 ----QLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 72 ----kTLSDYGIkdGSTIHLVlRlp 92 (765)
.||..|+|.+|++|-|+.+..
T Consensus 267 wkrLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp EEE--BHHHHT--TTEEEEEEES--
T ss_pred ceEeccHhhcCCCCCceEEEeeccc
Confidence 368999999999999999864
No 130
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=64.99 E-value=22 Score=30.21 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=36.2
Q ss_pred EEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004252 20 EIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRG 65 (765)
Q Consensus 20 qI~VKtLdGKTftLeVs-psdTV~dLKeKIeektGIPPeqQRLIF~G 65 (765)
+|+++. +|..+.+.+. ...+..+|+.+|.+++++.....+|-|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 466665 4677888888 89999999999999999887666777754
No 131
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=64.90 E-value=28 Score=32.12 Aligned_cols=47 Identities=11% Similarity=0.267 Sum_probs=37.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK 66 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GK 66 (765)
.|+|+|.. .|..+.+.|.++.+..+|.++|.+++++. ...+|-|...
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 46677764 67899999999999999999999999985 4455555443
No 132
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=64.19 E-value=15 Score=38.77 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=53.7
Q ss_pred CCCCcEEEEEEeCCC--cEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----Ce--ecCCcchhcccCCCC
Q 004252 14 SSETTIEIKIKTLDS--QTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICR----GK--VLKDDQLLSAYHVED 81 (765)
Q Consensus 14 ~s~stMqI~VKtLdG--KTft----LeVspsdTV~dLKeKIeektGIPPeqQRLIF~----GK--vLkDdkTLSDYGIkd 81 (765)
.....+-||+|..|- +++. +-|+.+++|.+|-..|.++.|+|++..-++|. ++ .++...+|..+.|.+
T Consensus 64 ~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~ 143 (249)
T PF12436_consen 64 DPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQD 143 (249)
T ss_dssp -TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--T
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCC
Confidence 345578999998863 3333 46889999999999999999999988777775 33 478889999999999
Q ss_pred CCEEEEeeecC
Q 004252 82 GHTLHMVVRQP 92 (765)
Q Consensus 82 GSTIHLVlRlp 92 (765)
|+.|.+=....
T Consensus 144 GdIi~fQ~~~~ 154 (249)
T PF12436_consen 144 GDIICFQRAPS 154 (249)
T ss_dssp TEEEEEEE--G
T ss_pred CCEEEEEeccc
Confidence 99998866543
No 133
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=64.17 E-value=28 Score=30.78 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=39.6
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004252 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (765)
Q Consensus 21 I~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G 65 (765)
+.|-..+|+.-.+.|.+.+||.++-+++.++.|+.++.-.|.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456678999999999999999999999999999999888777654
No 134
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=63.85 E-value=0.55 Score=37.57 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=30.7
Q ss_pred CCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 108 rtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
+...+.+.++.||+.||..++ ..|+|++.|+|+|.
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 356678999999999999998 89999999999864
No 135
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=63.21 E-value=22 Score=29.87 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=47.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 30 TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 30 TftLeVspsdTV~dLKeKIeektGI--PPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
...+.+....||.+|.+++..++.- ..+...+..+|+.+.+ ...++-+++|+.|.++...
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppv 74 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPV 74 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEEST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCC
Confidence 5667888999999999999877531 2356778889999888 3667888999999998644
No 136
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=62.83 E-value=24 Score=31.46 Aligned_cols=66 Identities=15% Similarity=0.322 Sum_probs=52.3
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhC---CCCCCeEEE-eCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 26 LDSQTYTLRVDKQVPVPALKEQIASVTG---VLSEQQRLI-CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 26 LdGKTftLeVspsdTV~dLKeKIeektG---IPPeqQRLI-F~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
.+|+...++.+.+..+.-+.++--+.++ -|++.=.|- -.|.+|+-++.+.|||+.++-+|.|.++.
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 3678888888889888888777766654 566654443 35889999999999999999999998874
No 137
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=61.77 E-value=57 Score=28.39 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=29.3
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCC--CCCeEEE
Q 004252 28 SQTYTLRVDKQVPVPALKEQIASVTGVL--SEQQRLI 62 (765)
Q Consensus 28 GKTftLeVspsdTV~dLKeKIeektGIP--PeqQRLI 62 (765)
+...+|.|+.++|..++-+.+.+|+++. +++..|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6667899999999999999999999987 4555554
No 138
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=58.46 E-value=44 Score=28.35 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=40.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
+|+.+.+ ....||.+|-+. .+++++..-+.++++.+..+.- ..+ +++||.|.++--.
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~V 62 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTAV 62 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEeec
Confidence 6676555 456787776654 5788888899999998853322 235 9999999987543
No 139
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=57.63 E-value=63 Score=26.94 Aligned_cols=58 Identities=12% Similarity=0.245 Sum_probs=41.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
+|+.+ ++....||.+|-+. .+++.+..-+.++|+.+.-. ...++-+++|+.|.++--.
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHAL 63 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEe
Confidence 66755 45567888877654 57888888888999887543 2445568999999887543
No 140
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=56.60 E-value=48 Score=30.51 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=47.7
Q ss_pred EEEEEeCCCcEEEEEec-----CCCCHHHHHHHHHHHhCCCC-CCeEEEeCCe-----ecCCcchhccc-----CCCCCC
Q 004252 20 EIKIKTLDSQTYTLRVD-----KQVPVPALKEQIASVTGVLS-EQQRLICRGK-----VLKDDQLLSAY-----HVEDGH 83 (765)
Q Consensus 20 qI~VKtLdGKTftLeVs-----psdTV~dLKeKIeektGIPP-eqQRLIF~GK-----vLkDdkTLSDY-----GIkdGS 83 (765)
.|||+. ++....+.+. ++.+..+|+++|.+.+++++ ....|-|... .|.++.-|.++ .-....
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~ 80 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLN 80 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCc
Confidence 466665 5666667776 47999999999999999988 5566777542 24444444332 333567
Q ss_pred EEEEeeec
Q 004252 84 TLHMVVRQ 91 (765)
Q Consensus 84 TIHLVlRl 91 (765)
+|.+.++.
T Consensus 81 ~lrl~v~~ 88 (91)
T cd06398 81 PLRIDVTV 88 (91)
T ss_pred eEEEEEEE
Confidence 77777653
No 141
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=55.04 E-value=75 Score=29.72 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=51.3
Q ss_pred CcEEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHh----C--CCCC-CeEEEeCCe--ecCCcchhcccC-----CCC
Q 004252 17 TTIEIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVT----G--VLSE-QQRLICRGK--VLKDDQLLSAYH-----VED 81 (765)
Q Consensus 17 stMqI~VKtLd-GKTftLeVspsdTV~dLKeKIeekt----G--IPPe-qQRLIF~GK--vLkDdkTLSDYG-----Ikd 81 (765)
..+.|.|...+ ...+++.++.++++.+|.+.+..+. + -+++ +..|--.|+ -|..+..|.+|. ++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 45667776644 4678999999999999999887661 1 2222 445545565 356677777764 677
Q ss_pred CCEEEEeeec
Q 004252 82 GHTLHMVVRQ 91 (765)
Q Consensus 82 GSTIHLVlRl 91 (765)
|..+||++..
T Consensus 96 ~~~~~L~L~~ 105 (108)
T smart00144 96 GREPHLVLMT 105 (108)
T ss_pred CCCceEEEEe
Confidence 8888888764
No 142
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=54.43 E-value=94 Score=26.34 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=39.4
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
+|+.+.+ ....||.+|.+.+ ++......+-.+++.+.. ....++-+++||.|.++--.
T Consensus 6 Ng~~~~~--~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v 63 (66)
T PRK08053 6 NDQPMQC--AAGQTVHELLEQL----NQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVI 63 (66)
T ss_pred CCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEc
Confidence 5676555 5567899888653 555566777788888742 23345568999999887543
No 143
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=53.93 E-value=47 Score=27.89 Aligned_cols=58 Identities=14% Similarity=0.306 Sum_probs=41.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
+|+.+. +....||.+|.+++ +++.+...+..+|+.+..+ ...++-|++|+.|.++--.
T Consensus 5 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 5 NGEPRE--VEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred CCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEec
Confidence 556544 45678999988765 4777888888999987543 2344568999999987543
No 144
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=52.24 E-value=1.3 Score=34.99 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=32.5
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIF 141 (765)
..|+++.+.+.++++|..+|.+|. ++|+++++|++.+
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~ 44 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF 44 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE
Confidence 457788899999999999999999 8899999999554
No 145
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=52.04 E-value=43 Score=30.93 Aligned_cols=58 Identities=12% Similarity=0.257 Sum_probs=44.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCCcchhcc
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA 76 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~-------GKvLkDdkTLSD 76 (765)
.-|+|-..||....|.|+..+|+.++-+.+..|..+..+.-.-+|. .|.++|...|-+
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvd 67 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVE 67 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHH
Confidence 3467777899999999999999999999999999877655443332 467788766544
No 146
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=51.69 E-value=68 Score=27.58 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=39.5
Q ss_pred EEEEEeCCCc----EEEEEecCCCCHHHHHHHHHHHhCC--CCCCeEEE-e---CC--eecCCc-chhc
Q 004252 20 EIKIKTLDSQ----TYTLRVDKQVPVPALKEQIASVTGV--LSEQQRLI-C---RG--KVLKDD-QLLS 75 (765)
Q Consensus 20 qI~VKtLdGK----TftLeVspsdTV~dLKeKIeektGI--PPeqQRLI-F---~G--KvLkDd-kTLS 75 (765)
-|+|-..++. ..++.|+..+|+.+|-+.+.+++++ .+++..|+ + .| +.|.|+ ..|.
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~ 72 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQ 72 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHH
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHH
Confidence 3455555666 7889999999999999999999998 34555673 2 23 567654 4443
No 147
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=49.92 E-value=1.8 Score=41.51 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=26.9
Q ss_pred cccccCccccccccccc------CCCCC--chhHHHHHH
Q 004252 112 SHVAPSVVIETFNLPDR------GDGVP--SEISQIVSA 142 (765)
Q Consensus 112 leVspSdTIesVKv~Iq------kEGIP--pdqQRLIFa 142 (765)
+.+.+++||.+||.+|+ ++|+| +++|+|||+
T Consensus 20 ~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys 58 (113)
T cd01814 20 KRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA 58 (113)
T ss_pred cccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC
Confidence 46789999999999986 46777 999999998
No 148
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=48.65 E-value=32 Score=41.95 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=38.3
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 004252 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (765)
Q Consensus 26 LdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvL 68 (765)
.+...+.+-++++.|+..|++.|...+|||...|-|+|.|...
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 3567788899999999999999999999999999999987643
No 149
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=47.32 E-value=80 Score=26.47 Aligned_cols=59 Identities=12% Similarity=0.293 Sum_probs=41.1
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 26 LdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
++|+.+.+ ....||.+|.+++ +++++...+..+|+.+..+ ...++-+++||.|.++.-.
T Consensus 3 iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 3 VNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFV 61 (64)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEec
Confidence 35665554 5577899988764 5667777778899887422 2345679999999887543
No 150
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.96 E-value=7.5 Score=45.02 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=50.8
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 33 LeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
++.+...|=.+|..+|+++.||+-...|.|.+||+|.-.+||.+-|++....+.+++.
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 4566777888999999999999999999999999999999999999988776666554
No 151
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=46.09 E-value=87 Score=27.35 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=37.8
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC--eecCCc
Q 004252 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG--KVLKDD 71 (765)
Q Consensus 21 I~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G--KvLkDd 71 (765)
+.|-..+|+...+.|.+.+||.++-.++.++.++.++.-.+...| |.|.-+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~ 55 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD 55 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence 456668999999999999999999999999999999877665433 455433
No 152
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=45.68 E-value=1.1e+02 Score=25.25 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=37.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
+|+.+ ++....||.+|.+.+ ++. ....+.++|+.+..+. ..+.-+++||.|.++--.
T Consensus 6 Ng~~~--~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v 62 (65)
T PRK06944 6 NQQTL--SLPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPV 62 (65)
T ss_pred CCEEE--ECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeec
Confidence 56654 445678899888765 333 3456778888764322 334458899999988644
No 153
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=45.47 E-value=93 Score=28.52 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=48.7
Q ss_pred CCcEEEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHH--hCCCCC----CeEEEeCCe--ecCCcchhcccC-----CCC
Q 004252 16 ETTIEIKIKTL-DSQTYTLRVDKQVPVPALKEQIASV--TGVLSE----QQRLICRGK--VLKDDQLLSAYH-----VED 81 (765)
Q Consensus 16 ~stMqI~VKtL-dGKTftLeVspsdTV~dLKeKIeek--tGIPPe----qQRLIF~GK--vLkDdkTLSDYG-----Ikd 81 (765)
...+.|.|... +...+++.|+.+.|+.+|.+++..+ .+..+. +..|=-.|+ -|..+..|.+|. ++.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~ 93 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKR 93 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHC
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhc
Confidence 35688888887 5677899999999999999888766 222221 345545564 366788888884 566
Q ss_pred CCEEEEeee
Q 004252 82 GHTLHMVVR 90 (765)
Q Consensus 82 GSTIHLVlR 90 (765)
+-.++|++.
T Consensus 94 ~~~~~L~Lv 102 (106)
T PF00794_consen 94 GKDPHLVLV 102 (106)
T ss_dssp T--EEEEEE
T ss_pred CCCcEEEEE
Confidence 777777664
No 154
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=45.22 E-value=44 Score=30.44 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=33.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004252 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (765)
Q Consensus 29 KTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G 65 (765)
-++.+++.+..+..+|..+|.+|...+++.-+|.|+-
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 3556788899999999999999999999999999963
No 155
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=43.89 E-value=9.9 Score=41.92 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=43.6
Q ss_pred eCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchh
Q 004252 25 TLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLL 74 (765)
Q Consensus 25 tLdGKTftLeVs-psdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTL 74 (765)
..+|.+..+.+. ....+..+|++|....+|++..|++.|.|..|+|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 456788877776 78889999999999999999999999999999998444
No 156
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=43.76 E-value=71 Score=29.34 Aligned_cols=56 Identities=34% Similarity=0.477 Sum_probs=36.3
Q ss_pred EecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCCc---chh--cccCCCCCCEEEEeeec
Q 004252 34 RVDKQVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDD---QLL--SAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 34 eVspsdTV~dLKeKIeektGIPPeqQRLIF~-GK------vLkDd---kTL--SDYGIkdGSTIHLVlRl 91 (765)
+++...||.+|-+.|.+++ +..+-+|+.. |+ +|-++ ..| .++.+++|++|.++...
T Consensus 24 ~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v 91 (94)
T cd01764 24 DGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTL 91 (94)
T ss_pred cCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCC
Confidence 3445679999999998876 3444455543 31 23222 334 46889999999998644
No 157
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=41.35 E-value=76 Score=29.61 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=34.4
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 004252 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (765)
Q Consensus 23 VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF 63 (765)
++...|++..+.|+.+.+..+|+.++.+.+++... ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 56778999999999999999999999999998865 55544
No 158
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=40.76 E-value=34 Score=38.63 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=52.5
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH-hCCCCCCeEEEeCC---eec--CCcchhcccCCCCCCE
Q 004252 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASV-TGVLSEQQRLICRG---KVL--KDDQLLSAYHVEDGHT 84 (765)
Q Consensus 20 qI~VKtLdGKTftLeVspsdTV~dLKeKIeek-tGIPPeqQRLIF~G---KvL--kDdkTLSDYGIkdGST 84 (765)
.|.||..||+.....+.+.++|..|-..++.. .|.+-+..+|+++= |.| +.+.||.++||.+-.+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 49999999998888888999999887777654 45667788999876 666 4568999999998765
No 159
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=40.18 E-value=83 Score=28.78 Aligned_cols=36 Identities=8% Similarity=0.248 Sum_probs=30.5
Q ss_pred EEEEEEeCCCcEEEEEecC--CCCHHHHHHHHHHHhCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDK--QVPVPALKEQIASVTGVL 55 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVsp--sdTV~dLKeKIeektGIP 55 (765)
++|++.. +|.+..+.+++ +.+..+|++.|...+++.
T Consensus 1 V~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 3566654 68888899988 779999999999999999
No 160
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=39.42 E-value=2.5 Score=34.16 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=30.3
Q ss_pred CCCCcccccccCccccccccccc-CCCCCchhHHHHH
Q 004252 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (765)
Q Consensus 106 tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIF 141 (765)
.++.....+.++.+|+.||..+. ..|+|++.|+|+|
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~ 42 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY 42 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 35666678888999999999998 8899999998855
No 161
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=37.03 E-value=2.6e+02 Score=24.46 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=32.0
Q ss_pred EEecC-CCCHHHHHHHHHHHhCC-----CCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 33 LRVDK-QVPVPALKEQIASVTGV-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 33 LeVsp-sdTV~dLKeKIeektGI-----PPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
++++. ..||.+|++.+.+++.- .....++..+++... .++-|++|+.|-++-.
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~-----~~~~l~dgDeVai~PP 77 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFPP 77 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcC-----CCCCCCCCCEEEEeCC
Confidence 34433 47999999999887521 112223333443322 2456899999988753
No 162
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=36.61 E-value=1.7e+02 Score=32.89 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=45.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
+|+.+. +....||.+|-++ .+++++..-+.++|+.+. .....++-|++||.|.++--..++
T Consensus 6 NGk~~e--l~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 6 NGEPRQ--VPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred CCEEEe--cCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCC
Confidence 667544 4566788877654 578888888999999984 334557779999999999876664
No 163
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=35.37 E-value=46 Score=30.16 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred EEec-CCCCHHHHHHHHHH-HhCCCCC----CeEEEeCCee----cCCcchhcccCCCCCCEEEEe
Q 004252 33 LRVD-KQVPVPALKEQIAS-VTGVLSE----QQRLICRGKV----LKDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 33 LeVs-psdTV~dLKeKIee-ktGIPPe----qQRLIF~GKv----LkDdkTLSDYGIkdGSTIHLV 88 (765)
+.++ ..+|+.+|-++|-+ +.|+... .-+++|..-. -..+++|+++||++|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444 57899999998744 5665432 3345554332 234589999999999988764
No 164
>PRK07440 hypothetical protein; Provisional
Probab=34.78 E-value=2.9e+02 Score=24.03 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=44.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
.|+|+| +|+. +++....||.+|-+ ..+++++..-+.++|+.+.- ....++-+++||.|.++--.
T Consensus 4 ~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 4 PITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred ceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEe
Confidence 466655 5675 45566788888775 35677777778889988752 23445668999999887543
No 165
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=33.01 E-value=1.4e+02 Score=27.26 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=42.3
Q ss_pred EEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 21 IKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 21 I~VKtLd-GKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF--~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
++|+..+ .+.+-|-. .++.+|+.|..++++++.+.-+|+. .|..++|+.-+.. + +..|+.|+++.
T Consensus 5 ~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--L-p~nT~lm~L~~ 72 (78)
T PF02017_consen 5 FKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--L-PDNTVLMLLEK 72 (78)
T ss_dssp EEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--S-SSSEEEEEEES
T ss_pred EEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--C-CCCCEEEEECC
Confidence 4555544 23344444 5899999999999999987777765 6888877654433 2 44566666553
No 166
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.98 E-value=1.2e+02 Score=33.67 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=54.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC-Cc--chhcccCCCCCCEEEE
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK-DD--QLLSAYHVEDGHTLHM 87 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI--F~GKvLk-Dd--kTLSDYGIkdGSTIHL 87 (765)
....|.||..||+++...+....++..|+..|.-+.+...+-..|. |--+.+. || ++|..+++..-.+|.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 5678888999999999999999999999999999988665433333 3345553 22 6888888877766654
No 167
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=32.14 E-value=1.1e+02 Score=31.69 Aligned_cols=104 Identities=22% Similarity=0.160 Sum_probs=50.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCC---CeEEE--eCCee---cCCcchhcccCCCCCCEEEEeeecCCC--CC-C
Q 004252 29 QTYTLRVDKQVPVPALKEQIASVTGVLSE---QQRLI--CRGKV---LKDDQLLSAYHVEDGHTLHMVVRQPVP--SS-S 97 (765)
Q Consensus 29 KTftLeVspsdTV~dLKeKIeektGIPPe---qQRLI--F~GKv---LkDdkTLSDYGIkdGSTIHLVlRlpg~--ps-s 97 (765)
+.+.+.|.++.||.+|.+++.++.+++.+ ..||. +++|. +..+..|... .+..++++=.-.... .. .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35778899999999999999999998765 44543 57764 5677777665 222232221110000 00 0
Q ss_pred --CCCCCCC---------CCCCCcccccccCccccccccccc-CCCCCc
Q 004252 98 --DGTHNLP---------GTSRSHGSHVAPSVVIETFNLPDR-GDGVPS 134 (765)
Q Consensus 98 --s~~~I~v---------~tGrtitleVspSdTIesVKv~Iq-kEGIPp 134 (765)
...-+.+ .-|--+-+.|.++.++..+|.+++ +-|++.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 0000000 112234568888999999998888 777754
No 168
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=32.12 E-value=1.3e+02 Score=27.13 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=38.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-CCCCCeEEEe------CCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 29 QTYTLRVDKQVPVPALKEQIASVTG-VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 29 KTftLeVspsdTV~dLKeKIeektG-IPPeqQRLIF------~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
+.|-+-.+++.|+.+|++.|.+++. +.|....+.. .|--|+.+-...|. +..+++|.++++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 4555567899999999999998875 4554433321 12223333333333 2467888888763
No 169
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=31.73 E-value=1.4e+02 Score=26.94 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=41.4
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-CCeecCCcchhcccCCCCCCEEEEeee
Q 004252 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-RGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 28 GKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF-~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
++.+.+.++...||+++-+ ..|+|..+-.+|+ +|+...- +|-+++|+.|.+.-.
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYPV 76 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEec
Confidence 4567788889999888664 4799998887664 7887653 478889999988753
No 170
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=29.35 E-value=1e+02 Score=28.72 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=36.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR 60 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQR 60 (765)
++|.|-..||..+.++|..+++..++-+.+..+.++|.+-.+
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 466777789999999999999999999999999999976553
No 171
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=28.52 E-value=3.4e+02 Score=23.27 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=39.2
Q ss_pred CCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 27 DSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 27 dGKTftLeVsps-dTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
+|+.+.+ ... .||.+|-+ ..+++++..-+.++++.+.-+ ...++-+++||.|.++--.
T Consensus 6 NG~~~~~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 6 NGNQIEV--PESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred CCEEEEc--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEe
Confidence 6776544 443 57777665 357777777788899988532 3445668999999887543
No 172
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=27.92 E-value=75 Score=30.18 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=23.2
Q ss_pred EEEeCCeecCCcchhcccCCCCCC--EEEEeeecCC
Q 004252 60 RLICRGKVLKDDQLLSAYHVEDGH--TLHMVVRQPV 93 (765)
Q Consensus 60 RLIF~GKvLkDdkTLSDYGIkdGS--TIHLVlRlpg 93 (765)
.|-|.||.|..+++|+|| |.... .|.+-+..++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl~~~g 37 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKLQKRG 37 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEeccCC
Confidence 478999999999999999 54444 4444444444
No 173
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=27.40 E-value=1.6e+02 Score=27.24 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=41.8
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---e--ecCCcchhccc
Q 004252 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---K--VLKDDQLLSAY 77 (765)
Q Consensus 20 qI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G---K--vLkDdkTLSDY 77 (765)
+.+||. +|.+..+.+...-+...|++||+..+.+|+...-|.|-. - -|.++.-|.++
T Consensus 2 ~fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 2 QFKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eEEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 567765 677777778888899999999999999999877776632 1 24455555544
No 174
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=26.61 E-value=3.2e+02 Score=24.80 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=37.4
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC
Q 004252 23 IKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG 65 (765)
Q Consensus 23 VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G 65 (765)
|--.||+.-.+.+.+.+||.++-.++.++.|+.++.-.++.-|
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 3456889889999999999999999999999999888777655
No 175
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=26.38 E-value=78 Score=28.84 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=38.8
Q ss_pred EEecCCCCHHHHHHHHHHHhCCC-------CCCeEEEeCCe-ec------CCcchhcccCCCCCCEEEEe
Q 004252 33 LRVDKQVPVPALKEQIASVTGVL-------SEQQRLICRGK-VL------KDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 33 LeVspsdTV~dLKeKIeektGIP-------PeqQRLIF~GK-vL------kDdkTLSDYGIkdGSTIHLV 88 (765)
|+|++++|+.+|-+.++++..+- -..-.|++.+- .| +-+++|.+. +.+|..|.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 57899999999999999874332 23344555442 23 235789999 9999988874
No 176
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=26.04 E-value=1.2e+02 Score=30.86 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=37.0
Q ss_pred cEEEEEEeCCCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCC
Q 004252 18 TIEIKIKTLDSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDG 82 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVsp-sdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdG 82 (765)
.|+++|+. -.+.+++.. .+.+.++++..++.+.++-+ +..|+-++...|+.|| ++.|
T Consensus 67 ~veL~V~v---Gri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY-~KyG 124 (153)
T PF02505_consen 67 EVELTVKV---GRIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY-AKYG 124 (153)
T ss_pred EEEEEEEE---eEEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh-hhcC
Confidence 45666665 345677776 56666666665555543322 4569999999999998 4443
No 177
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=25.92 E-value=2.6e+02 Score=27.42 Aligned_cols=52 Identities=2% Similarity=0.182 Sum_probs=41.6
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec
Q 004252 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL 68 (765)
Q Consensus 17 stMqI~VKtLdG----KTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvL 68 (765)
..+.|.+|...+ |.-.+.|++++|++.+-..|.+..+++..++-.+|=..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 457777776544 4556789999999999999999999999999888765543
No 178
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.92 E-value=5e+02 Score=24.86 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=47.3
Q ss_pred CcEEEEEEeCCC--------cEEEEEec---CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe------ec-C--Ccchh--
Q 004252 17 TTIEIKIKTLDS--------QTYTLRVD---KQVPVPALKEQIASVTGVLSEQQRLICRGK------VL-K--DDQLL-- 74 (765)
Q Consensus 17 stMqI~VKtLdG--------KTftLeVs---psdTV~dLKeKIeektGIPPeqQRLIF~GK------vL-k--DdkTL-- 74 (765)
..+.++|+.+.| |.+.++.+ ...||.+|-..|..++--.+++ -++.+|. +| + |...|
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllek 81 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEK 81 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcc
Confidence 457888887754 22333332 4578999988888865433333 3444542 23 2 34455
Q ss_pred cccCCCCCCEEEEeeecCC
Q 004252 75 SAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 75 SDYGIkdGSTIHLVlRlpg 93 (765)
.+|.+++|+.|.++-++-+
T Consensus 82 edy~ledgD~ivfiSTlHG 100 (101)
T KOG4146|consen 82 EDYPLEDGDHIVFISTLHG 100 (101)
T ss_pred cccCcccCCEEEEEEeccC
Confidence 4799999999988866543
No 179
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=25.64 E-value=1.4e+02 Score=31.65 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=32.9
Q ss_pred EEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 004252 19 IEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (765)
Q Consensus 19 MqI~VKtLd---GKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI 62 (765)
+.|+++... ...|.++++..+|-.+|-++|+++.++.|+..||.
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 566666643 34899999999999999999999999999998886
No 180
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=25.33 E-value=14 Score=41.35 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=35.1
Q ss_pred CCCCCCCcccccccCccccccccccc-CCC--CCchhHHHHHH
Q 004252 103 LPGTSRSHGSHVAPSVVIETFNLPDR-GDG--VPSEISQIVSA 142 (765)
Q Consensus 103 ~v~tGrtitleVspSdTIesVKv~Iq-kEG--IPpdqQRLIFa 142 (765)
++..+.++++.+.++++|..+|.+|. ..| .|..+|.||++
T Consensus 6 KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~ 48 (340)
T KOG0011|consen 6 KTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYS 48 (340)
T ss_pred eeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeec
Confidence 44677888999999999999999998 444 99999999998
No 181
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=25.00 E-value=2.3e+02 Score=27.86 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=49.3
Q ss_pred cEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcc----cCCCCCCEEEEeee
Q 004252 18 TIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSA----YHVEDGHTLHMVVR 90 (765)
Q Consensus 18 tMqI~VKtLd---GKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSD----YGIkdGSTIHLVlR 90 (765)
.+-|.|.... .|...+-|..+.||.+|...|.++.++.+++.-|+.++..+..+.++.+ |+= ++..|++...
T Consensus 27 rIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KD-eDGFLYi~Ys 105 (121)
T PTZ00380 27 HVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKR-DDGFLYVSVR 105 (121)
T ss_pred ccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcC-CCCeEEEEEc
Confidence 4555554432 2334446999999999999999999999998555566766666667654 333 3456777654
No 182
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=24.27 E-value=1.2e+02 Score=27.63 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=35.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCeec
Q 004252 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKVL 68 (765)
Q Consensus 29 KTftLeVspsdTV~dLKeKIeektGIPPeqQR-LIF~GKvL 68 (765)
..+++.|++.+|=.++|+.|+..+++.+..-+ +++.||.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 67899999999999999999999999998876 56777753
No 183
>PRK01777 hypothetical protein; Validated
Probab=23.95 E-value=5.1e+02 Score=24.18 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=44.0
Q ss_pred CcEEEEEEeCC-C--cEEEEEecCCCCHHHHHHHHHHHhCCCCC--C-----eEEEeCCeecCCcchhcccCCCCCCEEE
Q 004252 17 TTIEIKIKTLD-S--QTYTLRVDKQVPVPALKEQIASVTGVLSE--Q-----QRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (765)
Q Consensus 17 stMqI~VKtLd-G--KTftLeVspsdTV~dLKeKIeektGIPPe--q-----QRLIF~GKvLkDdkTLSDYGIkdGSTIH 86 (765)
.+|+|.|-... . +...+++....||.++-+.. ||+.+ + -++.-.||..+. |+-+++|+.|-
T Consensus 2 ~~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVe 72 (95)
T PRK01777 2 GKIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVE 72 (95)
T ss_pred CeeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEE
Confidence 36777776543 2 33557888999999876554 65554 2 245556665543 55678999999
Q ss_pred EeeecCC
Q 004252 87 MVVRQPV 93 (765)
Q Consensus 87 LVlRlpg 93 (765)
+.-.+..
T Consensus 73 IyrPL~~ 79 (95)
T PRK01777 73 IYRPLLA 79 (95)
T ss_pred EecCCCC
Confidence 8865443
No 184
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=23.84 E-value=34 Score=32.37 Aligned_cols=13 Identities=69% Similarity=1.027 Sum_probs=9.9
Q ss_pred CccccCCCCCCCCC
Q 004252 371 NPLMVQPLPFQPGT 384 (765)
Q Consensus 371 NpimVqP~P~q~g~ 384 (765)
|-|||| +|.|||.
T Consensus 89 NsmmvQ-lPGQPGi 101 (105)
T PF11388_consen 89 NSMMVQ-LPGQPGI 101 (105)
T ss_pred cceEEe-cCCCCCC
Confidence 678887 5888874
No 185
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=23.29 E-value=1.4e+02 Score=30.29 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=35.6
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhccc
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAY 77 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDY 77 (765)
.|.++|+. -.+.+++...+.+.++++...+.+.++- -+..||-+++..|+.||
T Consensus 66 ~veL~V~V---GrI~le~~~~~~i~~I~eiC~e~~pF~y----~i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 66 DVELRVQV---GRIILELEDEDIVEEIEEICKEMLPFGY----EVRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEEEE---eEEEEEecCHHHHHHHHHHHHhhCCCce----EeeeeeEeecCCchhhh
Confidence 45666665 3355666666677777766666554432 25568899999999998
No 186
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=22.96 E-value=2.2e+02 Score=27.13 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=28.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 004252 21 IKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (765)
Q Consensus 21 I~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPP 56 (765)
|+|-..+|.+..+.|....+-.++|.++-+|+|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 556667999999999999999999999999999887
No 187
>PF08828 DSX_dimer: Doublesex dimerisation domain; InterPro: IPR014932 Doublesex (DSX) is a transcription factor that regulates somatic sexual differences in Drosophila. The structure has revealed a novel dimeric arrangement of ubiquitin-associated folds that has not previously been identified in a transcription factor []. ; PDB: 1ZV1_B 2JZ0_A 2JZ1_B.
Probab=22.09 E-value=72 Score=28.07 Aligned_cols=23 Identities=35% Similarity=0.777 Sum_probs=18.5
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhh
Q 004252 704 RLLNQLQLQWLFMPLVRLILDSV 726 (765)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~ 726 (765)
.||.+++.-|=.|||+-.||...
T Consensus 12 kLlEkf~YpWEmmpLmyVILK~A 34 (62)
T PF08828_consen 12 KLLEKFRYPWEMMPLMYVILKYA 34 (62)
T ss_dssp HHHHHTT--GGGHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhc
Confidence 68999999999999999998653
No 188
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=21.50 E-value=1.9e+02 Score=26.61 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=34.5
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee
Q 004252 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV 67 (765)
Q Consensus 28 GKTftLeVspsdTV~dLKeKIeektGIPPeqQR-LIF~GKv 67 (765)
...+.+.|++.+|=.++|+.|+..+++++..-+ +++.||.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 478999999999999999999999999998876 5566654
No 189
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=21.47 E-value=4.7e+02 Score=23.08 Aligned_cols=62 Identities=15% Similarity=0.312 Sum_probs=42.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
|+|.+ +||. ++++...|+.+|-++ .+++++.--+.++|..+..+ ...++-+++||.|.++.-
T Consensus 3 m~i~~---ng~~--~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 3 MTIQL---NGKE--VEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRV 64 (68)
T ss_pred EEEEE---CCEE--EEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEe
Confidence 44444 3564 455556899887754 67888878888999887533 234666888888887753
No 190
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=21.34 E-value=3.4e+02 Score=23.76 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=37.2
Q ss_pred EEEEEEe-CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEE--e-CC--eecCCc
Q 004252 19 IEIKIKT-LDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLI--C-RG--KVLKDD 71 (765)
Q Consensus 19 MqI~VKt-LdGKTftLeVspsdTV~dLKeKIeektGIPP--eqQRLI--F-~G--KvLkDd 71 (765)
++|+.-. .++...+|.|..++|+.++-+.+.+++++.. +.-.|+ + .| +.|.++
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~ 65 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDD 65 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCC
Confidence 4444432 2366778999999999999999999999875 455554 2 34 456543
No 191
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=20.63 E-value=17 Score=42.48 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=30.8
Q ss_pred CcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 109 titleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
...+.|....+|+.||..|. .-++++|+++|||+
T Consensus 26 k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfa 60 (493)
T KOG0010|consen 26 KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYA 60 (493)
T ss_pred ceeEecccchHHHHHHHHHHHhcCCChhHeeeeec
Confidence 35678899999999999998 88999999999998
No 192
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=20.56 E-value=4.6e+02 Score=24.21 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=49.7
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 33 LeVspsdTV~dLKeKIeektGIPPeqQRLIF~-GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
+.|........+-+..++++++++..--+|-+ |--++..++-..+-++.|+.|.|+.|-+
T Consensus 20 lsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 20 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 57877888888888889999999988777754 6667888898999999999999987754
No 193
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=20.16 E-value=2.9e+02 Score=26.12 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=34.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCe
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGK 66 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQR-LIF~GK 66 (765)
+...+++.|+++.|=.++|+.|++.+++.+..-. |+..|+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCc
Confidence 4578999999999999999999999999988875 555553
Done!