Query 004252
Match_columns 765
No_of_seqs 282 out of 1397
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 19:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 99.9 1.1E-22 3.7E-27 193.6 4.8 124 14-142 16-142 (172)
2 3rt3_B Ubiquitin-like protein 99.8 1.8E-22 6.3E-27 188.8 4.0 120 18-142 2-127 (159)
3 3b08_A Polyubiquitin-C, ubiqui 99.8 8E-21 2.7E-25 174.1 4.2 119 19-142 1-122 (152)
4 3phx_B Ubiquitin-like protein 99.8 2.6E-18 9E-23 143.5 10.2 77 17-93 3-79 (79)
5 4dwf_A HLA-B-associated transc 99.7 4.6E-18 1.6E-22 145.5 10.6 80 16-96 3-82 (90)
6 4hcn_B Polyubiquitin, ubiquiti 99.7 4.2E-18 1.4E-22 149.4 9.4 93 1-93 1-97 (98)
7 3dbh_I NEDD8; cell cycle, acti 99.7 6.9E-18 2.4E-22 142.8 10.3 81 13-93 7-87 (88)
8 3v6c_B Ubiquitin; structural g 99.7 1.2E-17 4.1E-22 144.0 10.7 81 12-92 11-91 (91)
9 1wx8_A Riken cDNA 4931431F19; 99.7 1.5E-17 5.1E-22 144.5 10.5 92 3-95 2-93 (96)
10 1wy8_A NP95-like ring finger p 99.7 4.6E-17 1.6E-21 138.8 12.2 81 16-96 5-87 (89)
11 4fbj_B NEDD8; effector-HOST ta 99.7 1.5E-17 5.2E-22 143.3 9.3 77 19-95 1-77 (88)
12 3plu_A Ubiquitin-like modifier 99.7 2.2E-17 7.5E-22 147.3 9.7 76 14-89 17-92 (93)
13 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 4.8E-17 1.6E-21 137.9 11.4 80 15-94 4-83 (87)
14 1ttn_A DC-UBP, dendritic cell- 99.7 2.9E-17 1E-21 146.4 10.4 82 14-95 19-100 (106)
15 2dzi_A Ubiquitin-like protein 99.7 4.9E-17 1.7E-21 135.3 10.8 78 15-92 4-81 (81)
16 1ndd_A NEDD8, protein (ubiquit 99.7 3.5E-17 1.2E-21 133.8 9.6 75 19-93 1-75 (76)
17 3mtn_B UBA80, ubcep1, ubiquiti 99.7 4.2E-17 1.4E-21 136.6 10.1 78 17-94 2-79 (85)
18 2uyz_B Small ubiquitin-related 99.7 3.3E-17 1.1E-21 136.9 9.3 77 17-93 2-78 (79)
19 3n3k_B Ubiquitin; hydrolase, p 99.7 2.6E-17 8.7E-22 138.2 8.4 78 17-94 2-79 (85)
20 4eew_A Large proline-rich prot 99.7 4.3E-17 1.5E-21 139.0 9.9 75 15-90 14-88 (88)
21 2wyq_A HHR23A, UV excision rep 99.7 5.6E-17 1.9E-21 136.7 10.3 78 16-93 3-83 (85)
22 1uh6_A Ubiquitin-like 5; beta- 99.7 4E-17 1.4E-21 147.1 9.7 79 11-89 21-99 (100)
23 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.4E-16 4.9E-21 141.5 13.2 83 14-97 13-95 (106)
24 2faz_A Ubiquitin-like containi 99.7 5.5E-17 1.9E-21 135.0 9.6 75 18-92 2-78 (78)
25 1wyw_B Ubiquitin-like protein 99.7 4.9E-17 1.7E-21 142.8 9.7 80 14-93 17-96 (97)
26 3a9j_A Ubiquitin; protein comp 99.7 7.7E-17 2.6E-21 131.8 10.1 75 19-93 1-75 (76)
27 1wgd_A Homocysteine-responsive 99.7 7.8E-17 2.7E-21 139.7 10.4 80 16-95 5-90 (93)
28 2kk8_A Uncharacterized protein 99.7 6.1E-17 2.1E-21 139.5 9.3 74 17-90 9-83 (84)
29 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 8E-17 2.7E-21 139.1 10.0 77 19-95 2-78 (96)
30 2hj8_A Interferon-induced 17 k 99.7 5.5E-17 1.9E-21 139.6 8.9 78 17-94 3-80 (88)
31 3m62_B UV excision repair prot 99.7 3.1E-17 1.1E-21 146.6 7.4 78 18-95 1-78 (106)
32 2kdi_A Ubiquitin, vacuolar pro 99.7 3.2E-17 1.1E-21 148.7 7.1 101 17-122 8-113 (114)
33 1uel_A HHR23B, UV excision rep 99.7 2.2E-16 7.6E-21 137.8 11.7 77 19-95 1-80 (95)
34 2kan_A Uncharacterized protein 99.7 2.2E-16 7.5E-21 138.6 10.8 80 15-95 12-92 (94)
35 2l7r_A Ubiquitin-like protein 99.7 1.3E-16 4.4E-21 139.2 8.5 78 14-93 15-92 (93)
36 1sif_A Ubiquitin; hydrophobic 99.7 1.7E-16 5.9E-21 136.7 9.0 77 18-94 9-85 (88)
37 3vdz_A Ubiquitin-40S ribosomal 99.7 3.1E-16 1.1E-20 141.2 10.8 77 17-93 34-110 (111)
38 2lxa_A Ubiquitin-like protein 99.7 9.4E-17 3.2E-21 140.4 7.1 74 18-91 1-78 (87)
39 4a20_A Ubiquitin-like protein 99.7 2E-16 7E-21 141.1 8.9 78 15-92 16-97 (98)
40 2bwf_A Ubiquitin-like protein 99.7 3.9E-16 1.3E-20 128.7 9.9 74 17-91 3-76 (77)
41 2klc_A Ubiquilin-1; ubiquitin- 99.6 4.6E-16 1.6E-20 138.0 10.7 79 15-94 22-100 (101)
42 1yqb_A Ubiquilin 3; structural 99.6 4E-16 1.4E-20 138.3 10.2 81 14-95 18-98 (100)
43 1v5o_A 1700011N24RIK protein; 99.6 4.6E-16 1.6E-20 137.8 10.2 82 17-98 6-92 (102)
44 1wia_A Hypothetical ubiquitin- 99.6 8.4E-16 2.9E-20 133.4 11.3 80 14-96 3-83 (95)
45 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.2E-15 4.2E-20 140.4 12.6 86 10-95 8-103 (116)
46 3b1l_X E3 ubiquitin-protein li 99.4 1.6E-17 5.5E-22 137.3 0.0 75 19-93 1-75 (76)
47 1v2y_A 3300001G02RIK protein; 99.6 3.6E-16 1.2E-20 141.7 8.5 80 16-95 5-100 (105)
48 1yx5_B Ubiquitin; proteasome, 99.6 7.4E-16 2.5E-20 134.5 10.0 76 19-94 1-76 (98)
49 1j8c_A Ubiquitin-like protein 99.6 1.4E-15 4.7E-20 140.4 12.3 80 16-96 30-109 (125)
50 3rt3_B Ubiquitin-like protein 99.6 1.4E-15 4.7E-20 142.3 10.6 79 16-94 79-157 (159)
51 2ojr_A Ubiquitin; lanthide-bin 99.6 2.1E-15 7E-20 135.5 11.1 78 16-93 33-110 (111)
52 1v86_A DNA segment, CHR 7, way 99.6 1.7E-15 5.9E-20 132.9 9.6 81 11-93 10-90 (95)
53 3l0w_B Monoubiquitinated proli 99.6 2.5E-15 8.6E-20 144.9 11.0 77 19-95 1-77 (169)
54 1wju_A NEDD8 ultimate buster-1 99.6 2.5E-15 8.7E-20 135.4 10.0 77 18-95 15-95 (100)
55 1wxv_A BAG-family molecular ch 99.6 4.7E-15 1.6E-19 128.1 11.3 78 16-94 5-88 (92)
56 1x1m_A Ubiquitin-like protein 99.6 3.1E-15 1.1E-19 133.7 10.1 80 16-95 10-104 (107)
57 1we6_A Splicing factor, putati 99.6 2.3E-15 7.8E-20 135.0 9.1 78 17-94 26-107 (111)
58 2kdb_A Homocysteine-responsive 99.6 1.7E-15 5.8E-20 135.3 7.6 75 14-88 19-99 (99)
59 1v5t_A 8430435I17RIK protein; 99.6 3.9E-15 1.3E-19 129.2 9.2 76 16-92 5-84 (90)
60 2gow_A HCG-1 protein, ubiquiti 99.6 4.2E-15 1.4E-19 138.3 9.6 79 16-94 15-103 (125)
61 1wgg_A Ubiquitin carboxyl-term 99.6 8.3E-15 2.8E-19 129.2 10.9 76 16-93 5-81 (96)
62 2fnj_B Transcription elongatio 99.6 4.2E-15 1.4E-19 137.5 8.0 72 19-90 1-80 (118)
63 3m63_B Ubiquitin domain-contai 99.6 1.6E-15 5.5E-20 134.8 5.0 74 17-91 27-100 (101)
64 1se9_A Ubiquitin family; ubiqu 99.6 8.8E-15 3E-19 136.7 10.1 79 16-94 14-106 (126)
65 2daf_A FLJ35834 protein; hypot 99.6 2E-14 6.7E-19 133.2 11.8 82 13-94 10-92 (118)
66 3q3f_A Ribonuclease/ubiquitin 99.5 8.4E-15 2.9E-19 144.6 9.7 78 17-94 104-181 (189)
67 4ajy_B Transcription elongatio 99.5 6.5E-15 2.2E-19 136.4 8.3 74 19-92 1-82 (118)
68 3u30_A Ubiquitin, linear DI-ub 99.5 8.6E-15 2.9E-19 139.3 9.3 77 17-93 95-171 (172)
69 3b08_A Polyubiquitin-C, ubiqui 99.5 1.8E-14 6.1E-19 132.0 10.5 77 17-93 75-151 (152)
70 1we7_A SF3A1 protein; structur 99.5 2E-14 6.9E-19 129.7 10.5 78 17-94 24-111 (115)
71 3u5e_m 60S ribosomal protein L 99.5 7.3E-16 2.5E-20 141.7 0.0 77 19-95 1-77 (128)
72 4dbg_A Ranbp-type and C3HC4-ty 99.5 2.9E-14 1E-18 129.5 10.1 78 15-92 21-101 (105)
73 2kd0_A LRR repeats and ubiquit 99.5 2.9E-14 9.9E-19 122.7 9.4 73 17-90 11-83 (85)
74 2dzm_A FAS-associated factor 1 99.5 7.3E-14 2.5E-18 125.4 10.3 78 15-93 5-84 (100)
75 3u5c_f 40S ribosomal protein S 99.5 4.6E-15 1.6E-19 141.8 0.0 77 19-95 1-77 (152)
76 1oqy_A HHR23A, UV excision rep 99.5 4.7E-14 1.6E-18 151.3 7.6 79 16-94 5-87 (368)
77 2kjr_A CG11242; UBL, ubiquitin 99.4 3.8E-13 1.3E-17 119.2 10.2 75 14-88 11-93 (95)
78 2dzj_A Synaptic glycoprotein S 99.4 2E-13 6.9E-18 119.1 7.5 72 16-87 8-85 (88)
79 4b6w_A Tubulin-specific chaper 99.4 1.7E-13 5.7E-18 119.4 6.6 75 18-92 2-85 (86)
80 3ai5_A Yeast enhanced green fl 99.4 3.5E-13 1.2E-17 141.7 10.0 80 13-92 228-307 (307)
81 2kj6_A Tubulin folding cofacto 99.4 1E-12 3.5E-17 117.1 9.6 75 16-90 12-95 (97)
82 1wf9_A NPL4 family protein; be 99.4 7.6E-13 2.6E-17 118.6 8.1 75 17-92 6-96 (107)
83 1v6e_A Cytoskeleton-associated 99.4 1.8E-12 6.2E-17 113.4 9.9 76 16-91 5-88 (95)
84 2io1_B Small ubiquitin-related 99.4 1.5E-12 5.2E-17 115.2 8.9 80 15-94 4-83 (94)
85 1t0y_A Tubulin folding cofacto 99.3 3.3E-12 1.1E-16 117.1 10.3 76 17-92 5-88 (122)
86 2xzm_9 RPS31E; ribosome, trans 99.3 1.6E-13 5.6E-18 135.8 0.0 72 19-95 1-72 (189)
87 2io0_B Small ubiquitin-related 99.3 1.9E-11 6.4E-16 107.8 10.7 78 17-94 4-81 (91)
88 1wz0_A Ubiquitin-like protein 99.3 2.5E-11 8.6E-16 109.6 11.7 81 15-95 21-101 (104)
89 2d07_B Ubiquitin-like protein 99.2 2.1E-11 7.1E-16 107.5 9.7 79 15-93 14-92 (93)
90 1wm3_A Ubiquitin-like protein 99.2 4.1E-11 1.4E-15 100.4 9.7 72 18-89 1-72 (72)
91 2kzr_A Ubiquitin thioesterase 99.2 1.3E-11 4.4E-16 106.1 6.8 72 19-91 1-78 (86)
92 2k8h_A Small ubiquitin protein 99.2 5.1E-11 1.7E-15 108.8 10.1 81 14-94 22-102 (110)
93 2eke_C Ubiquitin-like protein 99.2 6.6E-11 2.2E-15 107.5 10.7 79 14-93 27-105 (106)
94 3shq_A UBLCP1; phosphatase, hy 99.2 1.6E-11 5.4E-16 129.4 7.5 76 16-92 3-81 (320)
95 3a4r_A Nfatc2-interacting prot 99.2 1.2E-10 4.3E-15 99.5 10.9 73 16-88 5-78 (79)
96 1wjn_A Tubulin-folding protein 99.0 7.2E-10 2.5E-14 97.1 9.6 77 16-92 7-94 (97)
97 3kyd_D Small ubiquitin-related 98.9 1.1E-08 3.7E-13 94.5 10.7 77 16-92 38-114 (115)
98 3pge_A SUMO-modified prolifera 98.7 6.1E-08 2.1E-12 96.9 10.1 81 14-95 25-105 (200)
99 3tix_A Ubiquitin-like protein 98.6 5E-08 1.7E-12 97.5 8.5 80 14-94 53-132 (207)
100 3v7o_A Minor nucleoprotein VP3 98.3 6.4E-08 2.2E-12 97.8 0.1 80 14-94 17-96 (227)
101 2jxx_A Nfatc2-interacting prot 98.2 6.3E-06 2.1E-10 74.0 10.4 76 13-88 20-96 (97)
102 2pjh_A Protein NPL4, nuclear p 98.2 7.2E-07 2.5E-11 76.8 3.6 71 17-88 3-78 (80)
103 3goe_A DNA repair protein RAD6 98.1 1.5E-05 5.2E-10 69.7 10.1 73 17-89 8-81 (82)
104 3uf8_A Ubiquitin-like protein 98.1 1.1E-05 3.8E-10 80.2 9.6 81 14-95 17-97 (209)
105 2l76_A Nfatc2-interacting prot 97.9 7.6E-05 2.6E-09 67.2 10.4 78 13-91 16-93 (95)
106 3ix6_A TS, tsase, thymidylate 97.9 1.9E-06 6.4E-11 92.8 0.0 80 14-94 17-96 (360)
107 4da1_A Protein phosphatase 1K, 97.8 2.5E-06 8.7E-11 90.9 0.0 79 15-94 27-105 (389)
108 4efo_A Serine/threonine-protei 97.7 7.2E-05 2.5E-09 67.1 7.3 69 21-89 15-87 (94)
109 2kc2_A Talin-1, F1; FERM, adhe 97.3 0.0003 1E-08 66.2 6.2 71 20-90 13-122 (128)
110 2bps_A YUKD protein; ubiquitin 97.2 0.00064 2.2E-08 59.4 6.8 71 17-87 3-80 (81)
111 2al3_A TUG long isoform; TUG U 97.0 0.0014 4.7E-08 58.6 7.4 77 17-93 8-84 (90)
112 3qx1_A FAS-associated factor 1 96.9 0.0047 1.6E-07 52.9 9.3 74 15-89 4-82 (84)
113 2dzk_A UBX domain-containing p 96.6 0.015 5.1E-07 52.6 10.8 78 16-93 11-93 (109)
114 1wju_A NEDD8 ultimate buster-1 96.3 0.00029 9.8E-09 63.6 -2.1 63 66-142 2-65 (100)
115 3plu_A Ubiquitin-like modifier 96.2 0.00011 3.7E-09 65.8 -5.3 38 105-142 29-67 (93)
116 1wj4_A KIAA0794 protein; UBX d 96.2 0.016 5.5E-07 53.7 8.8 75 15-90 40-119 (124)
117 2xzm_9 RPS31E; ribosome, trans 96.1 0.00089 3E-08 66.6 0.0 39 105-143 8-47 (189)
118 4eew_A Large proline-rich prot 96.0 0.00011 3.9E-09 62.2 -6.4 59 79-142 2-63 (88)
119 2cr5_A Reproduction 8; UBX dom 95.8 0.083 2.8E-06 47.6 11.2 74 16-90 21-98 (109)
120 1uh6_A Ubiquitin-like 5; beta- 95.5 0.00038 1.3E-08 62.8 -4.9 38 105-142 36-74 (100)
121 1s3s_G P47 protein; AAA ATPase 95.3 0.049 1.7E-06 50.5 8.1 73 14-86 48-124 (127)
122 2lxa_A Ubiquitin-like protein 95.2 0.00063 2.1E-08 59.4 -4.5 38 105-142 9-50 (87)
123 3m63_B Ubiquitin domain-contai 95.1 0.00067 2.3E-08 60.1 -4.7 65 71-142 7-73 (101)
124 2daj_A KIAA0977 protein, COBL- 95.1 0.14 4.9E-06 45.6 10.1 75 14-91 6-83 (91)
125 3b1l_X E3 ubiquitin-protein li 93.9 0.0045 1.5E-07 50.6 0.0 38 105-142 8-46 (76)
126 4e71_A Plexin-B2, MM1; transme 94.8 0.16 5.6E-06 46.8 9.9 75 16-90 9-110 (111)
127 3ivf_A Talin-1; FERM domain, c 94.7 0.053 1.8E-06 57.2 7.4 98 18-122 3-110 (371)
128 3phx_B Ubiquitin-like protein 94.3 0.00084 2.9E-08 55.6 -5.8 38 105-142 12-50 (79)
129 3u5e_m 60S ribosomal protein L 94.2 0.0082 2.8E-07 55.0 0.0 38 105-142 8-46 (128)
130 2kjr_A CG11242; UBL, ubiquitin 94.2 0.0026 8.7E-08 56.3 -3.3 36 107-142 27-63 (95)
131 2r2o_A Plexin-B1; effector dom 94.2 0.16 5.5E-06 48.5 8.7 78 15-92 21-130 (138)
132 2dzm_A FAS-associated factor 1 94.1 0.0019 6.5E-08 58.0 -4.4 37 105-141 16-53 (100)
133 3dbh_I NEDD8; cell cycle, acti 94.0 0.0017 5.9E-08 54.4 -4.6 38 105-142 20-58 (88)
134 4b6w_A Tubulin-specific chaper 94.0 0.0054 1.9E-07 53.2 -1.6 34 108-141 15-49 (86)
135 4ajy_B Transcription elongatio 93.8 0.0017 5.7E-08 60.4 -5.4 34 109-142 13-47 (118)
136 2fnj_B Transcription elongatio 93.8 0.0017 5.7E-08 60.3 -5.4 34 109-142 13-47 (118)
137 3u5c_f 40S ribosomal protein S 93.8 0.011 3.8E-07 56.5 0.0 38 105-142 8-46 (152)
138 4dwf_A HLA-B-associated transc 93.8 0.0012 4.1E-08 56.1 -6.1 38 105-142 13-51 (90)
139 2kj6_A Tubulin folding cofacto 93.7 0.0037 1.3E-07 55.6 -3.2 35 108-142 27-62 (97)
140 2kk8_A Uncharacterized protein 93.4 0.0024 8.3E-08 54.7 -4.8 38 105-142 18-56 (84)
141 1wyw_B Ubiquitin-like protein 93.4 0.0047 1.6E-07 54.0 -3.1 38 105-142 29-67 (97)
142 3m62_B UV excision repair prot 93.1 0.0038 1.3E-07 55.5 -4.1 38 105-142 9-47 (106)
143 4fbj_B NEDD8; effector-HOST ta 93.1 0.0022 7.4E-08 54.9 -5.6 38 105-142 8-46 (88)
144 3v6c_B Ubiquitin; structural g 93.0 0.003 1E-07 54.0 -4.8 38 105-142 25-63 (91)
145 3jyu_A Ubiquitin carboxyl-term 92.9 0.55 1.9E-05 47.2 10.6 76 19-94 140-224 (231)
146 2uyz_B Small ubiquitin-related 92.7 0.0028 9.7E-08 52.4 -5.2 38 105-142 11-49 (79)
147 4a3p_A Ubiquitin carboxyl-term 92.5 0.62 2.1E-05 46.4 10.4 75 19-93 128-211 (217)
148 1v5t_A 8430435I17RIK protein; 92.3 0.0054 1.8E-07 52.9 -4.2 36 105-140 14-51 (90)
149 1wh3_A 59 kDa 2'-5'-oligoadeny 92.1 0.004 1.4E-07 52.3 -5.1 38 105-142 15-53 (87)
150 4dbg_A Ranbp-type and C3HC4-ty 91.8 0.0046 1.6E-07 56.3 -5.4 36 107-142 36-72 (105)
151 4a20_A Ubiquitin-like protein 91.7 0.007 2.4E-07 53.9 -4.2 38 105-142 27-68 (98)
152 2faz_A Ubiquitin-like containi 91.6 0.0039 1.3E-07 51.3 -5.7 38 105-142 10-50 (78)
153 3mtn_B UBA80, ubcep1, ubiquiti 91.5 0.01 3.5E-07 49.1 -3.2 38 105-142 11-49 (85)
154 1oey_A P67-PHOX, neutrophil cy 91.4 0.98 3.4E-05 39.7 9.0 73 15-90 2-81 (83)
155 2hj8_A Interferon-induced 17 k 91.3 0.0089 3.1E-07 51.0 -3.8 37 106-142 13-50 (88)
156 2l7r_A Ubiquitin-like protein 91.3 0.0041 1.4E-07 54.0 -6.1 43 100-142 20-63 (93)
157 1wgh_A Ubiquitin-like 3, HCG-1 91.1 0.01 3.5E-07 54.7 -3.9 38 105-142 24-70 (116)
158 1sif_A Ubiquitin; hydrophobic 91.1 0.0058 2E-07 52.3 -5.3 38 105-142 17-55 (88)
159 1wgg_A Ubiquitin carboxyl-term 91.0 0.0057 2E-07 53.7 -5.5 36 107-142 16-53 (96)
160 1wy8_A NP95-like ring finger p 90.9 0.0081 2.8E-07 50.7 -4.5 38 105-142 15-55 (89)
161 1wgd_A Homocysteine-responsive 90.9 0.01 3.5E-07 51.0 -4.0 34 109-142 21-57 (93)
162 4hcn_B Polyubiquitin, ubiquiti 90.8 0.0071 2.4E-07 52.7 -5.1 38 105-142 30-68 (98)
163 3n3k_B Ubiquitin; hydrolase, p 90.6 0.0089 3.1E-07 49.6 -4.4 38 105-142 11-49 (85)
164 1v5o_A 1700011N24RIK protein; 90.6 0.012 4.2E-07 51.8 -3.8 36 107-142 21-57 (102)
165 1se9_A Ubiquitin family; ubiqu 90.6 0.016 5.4E-07 54.3 -3.2 38 105-142 24-70 (126)
166 2gow_A HCG-1 protein, ubiquiti 90.5 0.013 4.6E-07 54.5 -3.8 38 105-142 25-71 (125)
167 3k9o_B Ubiquitin, UBB+1; E2-25 90.2 0.0075 2.6E-07 51.6 -5.3 38 105-142 9-47 (96)
168 1ttn_A DC-UBP, dendritic cell- 90.2 0.0093 3.2E-07 52.9 -4.9 38 105-142 31-69 (106)
169 3h6n_A Plexin-D1; structural g 90.2 1.1 3.9E-05 42.2 8.8 74 18-91 4-105 (127)
170 2dzi_A Ubiquitin-like protein 90.0 0.011 3.7E-07 48.6 -4.4 38 105-142 15-53 (81)
171 2kan_A Uncharacterized protein 90.0 0.0095 3.3E-07 52.0 -5.0 34 109-142 26-60 (94)
172 1uel_A HHR23B, UV excision rep 89.9 0.0088 3E-07 51.8 -5.2 38 105-142 8-49 (95)
173 4e74_A Plexin-A4; RBD, structu 89.4 0.94 3.2E-05 42.2 7.5 76 16-91 11-115 (117)
174 1v6e_A Cytoskeleton-associated 89.3 0.018 6.1E-07 50.1 -3.8 34 109-142 20-54 (95)
175 2kdb_A Homocysteine-responsive 89.3 0.02 6.8E-07 51.0 -3.5 34 109-142 37-73 (99)
176 1ndd_A NEDD8, protein (ubiquit 89.1 0.0094 3.2E-07 48.0 -5.3 38 105-142 8-46 (76)
177 3l0w_B Monoubiquitinated proli 89.0 0.011 3.7E-07 57.0 -5.9 38 105-142 8-46 (169)
178 2wyq_A HHR23A, UV excision rep 89.0 0.016 5.4E-07 48.3 -4.2 38 105-142 13-54 (85)
179 1vjk_A Molybdopterin convertin 88.8 2.7 9.3E-05 36.6 9.8 69 17-90 8-94 (98)
180 1ryj_A Unknown; beta/alpha pro 88.7 3.6 0.00012 34.0 10.0 64 18-91 4-67 (70)
181 2ojr_A Ubiquitin; lanthide-bin 88.7 0.0081 2.8E-07 53.7 -6.5 38 105-142 43-81 (111)
182 2l32_A Small archaeal modifier 88.4 1 3.5E-05 38.2 6.6 62 19-90 1-62 (74)
183 1v86_A DNA segment, CHR 7, way 88.3 0.017 5.9E-07 50.3 -4.5 37 106-142 25-62 (95)
184 1we7_A SF3A1 protein; structur 88.3 0.02 7E-07 51.3 -4.2 57 83-142 24-81 (115)
185 3q3f_A Ribonuclease/ubiquitin 88.1 0.015 5E-07 57.7 -5.8 38 105-142 113-151 (189)
186 1wx8_A Riken cDNA 4931431F19; 87.7 0.024 8.2E-07 48.8 -4.0 36 107-142 26-62 (96)
187 3kuz_A Plexin-C1; structural g 87.6 3 0.0001 39.4 9.7 74 16-89 17-125 (126)
188 1we6_A Splicing factor, putati 87.3 0.032 1.1E-06 49.7 -3.5 51 82-142 25-77 (111)
189 1yx5_B Ubiquitin; proteasome, 87.1 0.022 7.5E-07 49.3 -4.6 38 105-142 8-46 (98)
190 2klc_A Ubiquilin-1; ubiquitin- 87.1 0.037 1.3E-06 48.7 -3.2 36 107-142 34-70 (101)
191 2kd0_A LRR repeats and ubiquit 86.9 0.018 6.3E-07 49.1 -5.1 38 105-142 19-57 (85)
192 2kdi_A Ubiquitin, vacuolar pro 86.6 0.025 8.6E-07 51.0 -4.7 38 105-142 17-55 (114)
193 3vdz_A Ubiquitin-40S ribosomal 86.5 0.024 8.2E-07 50.8 -4.8 38 105-142 43-81 (111)
194 2bwf_A Ubiquitin-like protein 86.4 0.02 7E-07 46.5 -4.9 36 107-142 13-49 (77)
195 2dzj_A Synaptic glycoprotein S 86.3 0.048 1.6E-06 47.3 -2.9 38 105-142 18-60 (88)
196 1wxv_A BAG-family molecular ch 86.0 0.03 1E-06 47.9 -4.3 36 107-142 16-57 (92)
197 3a9j_A Ubiquitin; protein comp 85.8 0.019 6.7E-07 46.2 -5.3 37 106-142 9-46 (76)
198 1v2y_A 3300001G02RIK protein; 84.1 0.014 4.9E-07 52.8 -7.5 33 105-137 15-48 (105)
199 1wx7_A Ubiquilin 3; ubiquitin- 83.1 0.078 2.7E-06 46.7 -3.1 33 110-142 29-62 (106)
200 3rpf_C Molybdopterin convertin 83.0 3.5 0.00012 34.1 7.1 68 19-91 1-71 (74)
201 1yqb_A Ubiquilin 3; structural 82.8 0.034 1.2E-06 49.0 -5.5 33 110-142 34-67 (100)
202 3hm6_X Plexin-B1; structural g 81.9 3.5 0.00012 47.7 8.8 79 15-93 254-364 (644)
203 1t0y_A Tubulin folding cofacto 81.9 0.051 1.8E-06 49.5 -4.8 34 109-142 19-53 (122)
204 1vd2_A Protein kinase C, IOTA 81.4 5.9 0.0002 35.1 8.3 51 15-66 3-54 (89)
205 3po0_A Small archaeal modifier 81.1 11 0.00038 31.8 9.8 58 29-91 18-86 (89)
206 1j8c_A Ubiquitin-like protein 80.9 0.052 1.8E-06 49.9 -5.2 36 107-142 41-77 (125)
207 1wgk_A Riken cDNA 2900073H19 p 80.9 9.5 0.00032 34.8 9.7 76 17-94 10-108 (114)
208 1wf9_A NPL4 family protein; be 80.5 0.076 2.6E-06 47.3 -4.1 32 111-142 20-53 (107)
209 1tyg_B YJBS; alpha beta barrel 80.3 4 0.00014 35.8 6.8 67 15-91 17-84 (87)
210 4efo_A Serine/threonine-protei 79.8 0.054 1.9E-06 48.6 -5.3 38 106-143 22-60 (94)
211 1wgr_A Growth factor receptor- 79.4 10 0.00035 34.3 9.3 79 14-92 5-94 (100)
212 1ef1_A Moesin; membrane, FERM 79.3 6.5 0.00022 39.7 9.0 72 18-90 1-78 (294)
213 3ai5_A Yeast enhanced green fl 78.5 0.1 3.5E-06 55.2 -4.6 38 105-142 241-279 (307)
214 2juo_A GA-binding protein alph 77.9 5 0.00017 35.8 6.6 62 31-92 5-66 (89)
215 1h4r_A Merlin; FERM, neurofibr 77.2 6.6 0.00023 40.2 8.5 74 16-90 20-98 (314)
216 1ip9_A BEM1 protein; ubiquitin 75.7 9.7 0.00033 33.8 7.8 44 17-63 11-54 (85)
217 1wia_A Hypothetical ubiquitin- 75.5 0.13 4.3E-06 44.2 -4.1 35 105-142 15-50 (95)
218 3ig3_A Plxna3 protein; plexin 75.1 9 0.00031 44.2 9.4 78 15-92 230-336 (627)
219 1x1m_A Ubiquitin-like protein 74.8 0.14 4.7E-06 45.4 -4.2 29 114-142 40-73 (107)
220 1oqy_A HHR23A, UV excision rep 73.5 0.17 5.9E-06 54.6 -4.6 38 105-142 15-56 (368)
221 3shq_A UBLCP1; phosphatase, hy 73.2 0.22 7.5E-06 52.7 -3.8 35 106-140 13-48 (320)
222 3ivf_A Talin-1; FERM domain, c 72.8 13 0.00043 39.2 9.4 74 17-90 84-167 (371)
223 3dwg_C 9.5 kDa culture filtrat 72.6 12 0.0004 32.0 7.5 72 19-92 1-91 (93)
224 3qij_A Protein 4.1; cytoskelet 72.0 8.1 0.00028 39.7 7.6 79 12-90 11-95 (296)
225 2kvr_A Ubiquitin carboxyl-term 71.6 2.7 9.1E-05 39.3 3.5 33 31-63 58-90 (130)
226 1wgy_A RAP guanine nucleotide 70.3 14 0.00048 33.8 7.8 77 15-91 6-87 (104)
227 2kmc_A Fermitin family homolog 70.2 24 0.00081 32.3 9.1 73 18-90 19-99 (102)
228 2qjl_A URM1, ubiquitin-related 70.1 26 0.00089 30.4 9.3 71 19-91 2-96 (99)
229 1fm0_D Molybdopterin convertin 70.1 13 0.00044 30.6 7.0 56 29-90 17-77 (81)
230 2i1j_A Moesin; FERM, coiled-co 69.9 11 0.00037 42.8 8.6 73 17-90 3-81 (575)
231 2kzr_A Ubiquitin thioesterase 67.1 0.19 6.7E-06 42.7 -4.8 36 105-141 8-45 (86)
232 2k9x_A Tburm1, uncharacterized 65.8 2.1 7.1E-05 39.0 1.4 75 17-93 3-101 (110)
233 2l52_A Methanosarcina acetivor 63.7 24 0.00081 30.8 7.8 69 18-90 3-95 (99)
234 4eut_A Serine/threonine-protei 62.2 27 0.00092 36.1 9.2 53 27-79 320-374 (396)
235 1f0z_A THis protein; ubiquitin 61.1 16 0.00056 29.4 5.8 57 27-90 6-62 (66)
236 2kl0_A Putative thiamin biosyn 60.7 17 0.00059 30.5 6.1 59 27-93 6-64 (73)
237 2q5w_D Molybdopterin convertin 58.9 15 0.00051 30.0 5.3 56 29-90 16-73 (77)
238 1q1o_A Cell division control p 54.6 24 0.00083 31.9 6.3 38 18-55 5-49 (98)
239 2io1_B Small ubiquitin-related 54.5 0.58 2E-05 41.1 -4.2 41 105-145 15-56 (94)
240 2k5p_A THis protein, thiamine- 52.5 26 0.00089 29.8 5.9 63 27-94 6-69 (78)
241 3qa8_A MGC80376 protein; kinas 51.8 14 0.00049 42.7 5.5 51 27-77 320-371 (676)
242 2cu3_A Unknown function protei 51.1 26 0.00088 28.2 5.4 58 26-91 4-61 (64)
243 2kmm_A Guanosine-3',5'-BIS(dip 49.8 24 0.00083 28.3 5.1 63 19-90 1-63 (73)
244 2ylm_A Ubiquitin carboxyl-term 48.9 25 0.00087 39.4 6.7 77 15-91 127-218 (530)
245 2dhz_A RAP guanine nucleotide 47.1 45 0.0016 31.2 7.0 75 16-90 7-92 (120)
246 2daf_A FLJ35834 protein; hypot 46.5 0.77 2.6E-05 42.8 -4.9 36 107-142 26-62 (118)
247 1f2r_I Inhibitor of caspase-ac 43.6 1.1E+02 0.0036 27.9 8.6 75 12-91 12-90 (100)
248 2ylm_A Ubiquitin carboxyl-term 43.3 13 0.00046 41.6 3.4 32 31-62 38-69 (530)
249 1y8x_B Ubiquitin-activating en 42.1 18 0.00061 32.5 3.4 59 30-88 6-82 (98)
250 2g1e_A Hypothetical protein TA 38.8 84 0.0029 26.1 6.9 57 33-90 19-86 (90)
251 1wm3_A Ubiquitin-like protein 36.9 1.2 4E-05 36.9 -4.8 40 105-144 9-49 (72)
252 3au4_A Myosin-X; protein-prote 36.8 61 0.0021 35.9 7.4 58 17-74 215-278 (555)
253 2lgx_A Fermitin family homolog 34.1 16 0.00056 33.8 1.8 71 19-90 27-102 (112)
254 1rws_A Hypothetical protein PF 33.2 20 0.00069 29.9 2.2 48 33-89 25-72 (77)
255 2c7h_A RBBP6, retinoblastoma-b 33.0 1E+02 0.0035 27.3 6.7 44 18-61 6-51 (86)
256 2io0_B Small ubiquitin-related 31.1 2.1 7E-05 37.5 -4.4 41 105-145 13-54 (91)
257 3onh_A Ubiquitin-activating en 30.9 97 0.0033 29.3 6.5 53 37-90 18-79 (127)
258 3a4r_A Nfatc2-interacting prot 30.0 1.3 4.4E-05 37.5 -5.8 40 105-144 15-56 (79)
259 2eel_A Cell death activator CI 29.8 1.1E+02 0.0038 27.3 6.4 66 20-91 11-79 (91)
260 1wjn_A Tubulin-folding protein 29.5 5.9 0.0002 34.2 -1.8 36 106-141 21-57 (97)
261 4gmv_A RAS-associated and plec 28.5 1.8E+02 0.0063 30.3 8.8 73 17-89 30-113 (281)
262 2hj1_A Hypothetical protein; s 28.4 1.2E+02 0.0042 26.9 6.5 71 17-92 11-87 (97)
263 2v1y_A Phosphatidylinositol-4, 27.2 95 0.0033 28.5 5.6 74 16-90 17-104 (108)
264 2d07_B Ubiquitin-like protein 25.3 3.1 0.00011 36.3 -4.3 40 106-145 26-66 (93)
265 2k8h_A Small ubiquitin protein 22.8 3.1 0.00011 37.9 -5.0 40 105-144 34-74 (110)
266 2inc_C TOUB protein; DIIRON, 4 22.3 2.9E+02 0.0099 24.5 7.5 60 31-90 15-82 (83)
267 3pvl_A Myosin VIIA isoform 1; 21.7 1.1E+02 0.0037 35.3 6.1 40 17-56 262-301 (655)
268 1wz0_A Ubiquitin-like protein 21.4 3.5 0.00012 37.0 -4.9 41 105-145 32-73 (104)
269 3tca_A Amyloid beta A4 precurs 20.5 1.9E+02 0.0064 28.4 6.9 44 17-60 33-76 (291)
270 1j0g_A Hypothetical protein 18 20.1 2.3E+02 0.0078 25.3 6.3 63 31-93 26-89 (92)
271 3r8s_T 50S ribosomal protein L 20.0 1.8E+02 0.0061 25.8 5.8 40 28-67 27-67 (93)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.86 E-value=1.1e-22 Score=193.58 Aligned_cols=124 Identities=31% Similarity=0.469 Sum_probs=113.1
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.....|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||+++..+
T Consensus 16 ~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp ---CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCC--CCCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 94 PSSSDGTHNL--PGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 94 ~psss~~~I~--v~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.++ ...|+++.+.|++++||..||.+|+ ++|+|+++|||+|.
T Consensus 96 -----g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 96 -----GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp -----CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred -----cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 34333 3778999999999999999999999 99999999999975
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.85 E-value=1.8e-22 Score=188.83 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=110.8
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE-e-CCeecCCcchhcccCCCCCCEEEEeeec-CCC
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI-C-RGKVLKDDQLLSAYHVEDGHTLHMVVRQ-PVP 94 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI-F-~GKvLkDdkTLSDYGIkdGSTIHLVlRl-pg~ 94 (765)
.|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+ | +|+.|+|+++|++|+|++|++|||+++. ++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~- 80 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE- 80 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC-
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC-
Confidence 489999999999999999999999999999999999999999999 9 7999999999999999999999999984 33
Q ss_pred CCCCCCCCCC--CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 95 SSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 95 psss~~~I~v--~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.+++ ..|+++.++|++++||++||.+|+ ++|+|+++|||+|+
T Consensus 81 ----~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 81 ----PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp ----CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred ----cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 455544 678999999999999999999999 99999999999885
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.81 E-value=8e-21 Score=174.11 Aligned_cols=119 Identities=32% Similarity=0.482 Sum_probs=110.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCCCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSD 98 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~psss 98 (765)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|++|++|||+.+.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~----- 75 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG----- 75 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTT-----
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccc-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCCCC--CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 99 GTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 99 ~~~I~v--~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.+.+ ..|+.+.+.++++++|..||.+++ +.|+|++.|||+|.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 343433 678889999999999999999999 89999999999875
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=143.55 Aligned_cols=77 Identities=25% Similarity=0.316 Sum_probs=74.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+.|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999764
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=4.6e-18 Score=145.54 Aligned_cols=80 Identities=44% Similarity=0.666 Sum_probs=74.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
..+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+| +|++|||+++.++..
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 899999999987754
Q ss_pred C
Q 004252 96 S 96 (765)
Q Consensus 96 s 96 (765)
.
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 6
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.2e-18 Score=149.44 Aligned_cols=93 Identities=32% Similarity=0.430 Sum_probs=74.5
Q ss_pred CCCCCCCCCCC----CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcc
Q 004252 1 MESRGTVKIPG----AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSA 76 (765)
Q Consensus 1 M~s~Sse~i~~----ae~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSD 76 (765)
|++.+.+.-.+ ....+..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ 80 (98)
T 4hcn_B 1 MGSSHHHHHHSSGENLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 80 (98)
T ss_dssp ---------------------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGG
T ss_pred CCccccccCCCCCCCCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHH
Confidence 55554444332 33445689999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEeeecCC
Q 004252 77 YHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 77 YGIkdGSTIHLVlRlpg 93 (765)
|+|++|++|||++|+++
T Consensus 81 ~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 81 YNIQKESTLHLVLRLRG 97 (98)
T ss_dssp GTCCTTEEEEEECBCSC
T ss_pred CCCCCCCEEEEEEecCC
Confidence 99999999999999876
No 7
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.74 E-value=6.9e-18 Score=142.77 Aligned_cols=81 Identities=30% Similarity=0.487 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 13 e~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
..++..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.
T Consensus 7 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 7 VGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp SSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred CCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 004252 93 V 93 (765)
Q Consensus 93 g 93 (765)
+
T Consensus 87 G 87 (88)
T 3dbh_I 87 G 87 (88)
T ss_dssp C
T ss_pred C
Confidence 6
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=1.2e-17 Score=143.99 Aligned_cols=81 Identities=32% Similarity=0.500 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 12 ae~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
.......|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 004252 92 P 92 (765)
Q Consensus 92 p 92 (765)
+
T Consensus 91 r 91 (91)
T 3v6c_B 91 R 91 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1.5e-17 Score=144.48 Aligned_cols=92 Identities=29% Similarity=0.426 Sum_probs=81.7
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCC
Q 004252 3 SRGTVKIPGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDG 82 (765)
Q Consensus 3 s~Sse~i~~ae~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdG 82 (765)
+.++........+...|+|+||+. |+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g 80 (96)
T 1wx8_A 2 SSGSSGVSGREPSSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDG 80 (96)
T ss_dssp CCCCCCCCCSCCCSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTT
T ss_pred CCCCccccCCCCCCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCC
Confidence 344444444444667899999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeecCCCC
Q 004252 83 HTLHMVVRQPVPS 95 (765)
Q Consensus 83 STIHLVlRlpg~p 95 (765)
++|||+++..+.+
T Consensus 81 ~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 81 STVHVVVRSHSGP 93 (96)
T ss_dssp EEEECCBCCSSCS
T ss_pred CEEEEEEeCCCCC
Confidence 9999999987754
No 10
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.6e-17 Score=138.79 Aligned_cols=81 Identities=28% Similarity=0.445 Sum_probs=76.3
Q ss_pred CCcEEEEEEeCCC-cEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 16 ETTIEIKIKTLDS-QTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 16 ~stMqI~VKtLdG-KTftL-eVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
...|+|+||+++| +++.+ +|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||+++..+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 4679999999999 79999 599999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 004252 94 PSS 96 (765)
Q Consensus 94 ~ps 96 (765)
..+
T Consensus 85 G~~ 87 (89)
T 1wy8_A 85 GPS 87 (89)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.71 E-value=1.5e-17 Score=143.28 Aligned_cols=77 Identities=29% Similarity=0.483 Sum_probs=73.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++|++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998854
No 12
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.71 E-value=2.2e-17 Score=147.28 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=71.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
....+|+|+||++.|+++.++|++++||.+||++|++++|+|+++|||+|+||+|+|+.+|++|+|++|++|||..
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999964
No 13
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.8e-17 Score=137.89 Aligned_cols=80 Identities=26% Similarity=0.386 Sum_probs=76.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
+...|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++++.+.
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998874
No 14
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.9e-17 Score=146.38 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=76.5
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.....|+|+||+++|+++.++|++++||.+||++|++++|+++++|||+|+||.|+|+++|++|+|++|++|||+++.+.
T Consensus 19 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 19 NSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp --CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 004252 94 PS 95 (765)
Q Consensus 94 ~p 95 (765)
.+
T Consensus 99 ~~ 100 (106)
T 1ttn_A 99 QN 100 (106)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 15
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.9e-17 Score=135.33 Aligned_cols=78 Identities=28% Similarity=0.469 Sum_probs=74.2
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
+...|+|+||+.+|+.+.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|++
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 446799999999999999999999999999999999999999999999999999999999999999999999999863
No 16
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.70 E-value=3.5e-17 Score=133.82 Aligned_cols=75 Identities=29% Similarity=0.501 Sum_probs=72.5
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999876
No 17
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.2e-17 Score=136.57 Aligned_cols=78 Identities=33% Similarity=0.494 Sum_probs=75.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998875
No 18
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.70 E-value=3.3e-17 Score=136.89 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=74.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
..|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+||.|+|+++|++|+|++|++|||++++.+
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999876
No 19
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=2.6e-17 Score=138.16 Aligned_cols=78 Identities=29% Similarity=0.457 Sum_probs=73.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
.+|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+.+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999875
No 20
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=138.97 Aligned_cols=75 Identities=45% Similarity=0.681 Sum_probs=71.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
....|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+| +|++|||++|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 34679999999999999999999999999999999999999999999999999999999999999 8999999986
No 21
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.70 E-value=5.6e-17 Score=136.66 Aligned_cols=78 Identities=28% Similarity=0.487 Sum_probs=72.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeek---tGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
...|+|+||+++|+.+.++|++++||.+||++|+++ +|+|+++|||+|+||.|+|+++|++|+|++|++|||+++.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 357999999999999999999999999999999998 89999999999999999999999999999999999999876
Q ss_pred C
Q 004252 93 V 93 (765)
Q Consensus 93 g 93 (765)
.
T Consensus 83 ~ 83 (85)
T 2wyq_A 83 K 83 (85)
T ss_dssp -
T ss_pred C
Confidence 5
No 22
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=4e-17 Score=147.06 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=74.9
Q ss_pred CCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 11 ~ae~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
.+++...+|+|+||++.|+++.|+|++++||.+||++|++++|+|+++|||+|.||+|+|+.+|++|+|+++++|||+.
T Consensus 21 ~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 21 GSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred cCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 4566677899999999999999999999999999999999999999999999999999999999999999999999975
No 23
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.4e-16 Score=141.49 Aligned_cols=83 Identities=28% Similarity=0.408 Sum_probs=76.9
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
..+..|+|+||+.+++ +.++|++++||.+||++|++++++++++|||+|+||.|+|+++|.+|+|++|++|||++++.+
T Consensus 13 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 13 QDPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp CCSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred CCCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 3467899999999886 799999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCC
Q 004252 94 PSSS 97 (765)
Q Consensus 94 ~pss 97 (765)
.+..
T Consensus 92 ~~~~ 95 (106)
T 1wx7_A 92 RAMG 95 (106)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 24
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.5e-17 Score=134.99 Aligned_cols=75 Identities=29% Similarity=0.471 Sum_probs=71.9
Q ss_pred cEEEEEEeCCCcEE-EEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 18 TIEIKIKTLDSQTY-TLR-VDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 18 tMqI~VKtLdGKTf-tLe-VspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
.|+|+||+++|+++ .++ |++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 59999999999985 899 9999999999999999999999999999999999999999999999999999999863
No 25
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.69 E-value=4.9e-17 Score=142.85 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=75.6
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.+...|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|||+|+||.|+|+++|++|+|++|++|||++++.+
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999876
No 26
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.69 E-value=7.7e-17 Score=131.76 Aligned_cols=75 Identities=37% Similarity=0.561 Sum_probs=73.1
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
|+|+||+.+|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999876
No 27
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=7.8e-17 Score=139.67 Aligned_cols=80 Identities=29% Similarity=0.381 Sum_probs=74.4
Q ss_pred CCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHh--CCCCCCeEEEeCCeecCCcchhccc--CCCCCCEEEEee
Q 004252 16 ETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVT--GVLSEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHMVV 89 (765)
Q Consensus 16 ~stMqI~VKtLdGK--TftLeVspsdTV~dLKeKIeekt--GIPPeqQRLIF~GKvLkDdkTLSDY--GIkdGSTIHLVl 89 (765)
...|+|+||+.+++ ++.++|++++||.+||++|++++ ++|+++|||+|+||.|+|+++|++| +|+++++|||++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45699999999998 67777889999999999999998 9999999999999999999999999 999999999999
Q ss_pred ecCCCC
Q 004252 90 RQPVPS 95 (765)
Q Consensus 90 Rlpg~p 95 (765)
+.++.+
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 988764
No 28
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=6.1e-17 Score=139.48 Aligned_cols=74 Identities=19% Similarity=0.365 Sum_probs=72.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee-cCCcchhcccCCCCCCEEEEeee
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV-LKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKv-LkDdkTLSDYGIkdGSTIHLVlR 90 (765)
..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||. |+|+++|++|+|++|++|+|+++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 579999999999999999999999999999999999999999999999999 99999999999999999999986
No 29
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.68 E-value=8e-17 Score=139.08 Aligned_cols=77 Identities=36% Similarity=0.541 Sum_probs=73.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.+..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988753
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=139.56 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=72.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++..+.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999998764
No 31
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.1e-17 Score=146.64 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=71.1
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
+|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||+++.+...
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999976643
No 32
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.2e-17 Score=148.65 Aligned_cols=101 Identities=30% Similarity=0.345 Sum_probs=91.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPSS 96 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ps 96 (765)
..++|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|++++++..
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~- 86 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS- 86 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC-
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc-
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCC-----CCCCCcccccccCccccc
Q 004252 97 SDGTHNLP-----GTSRSHGSHVAPSVVIET 122 (765)
Q Consensus 97 ss~~~I~v-----~tGrtitleVspSdTIes 122 (765)
.+++ ..|++++++|+++++|+.
T Consensus 87 ----~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 ----MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp ----CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ----eeeccccccccCceEEEEeccccccCC
Confidence 2222 357888999999988864
No 33
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=2.2e-16 Score=137.77 Aligned_cols=77 Identities=32% Similarity=0.559 Sum_probs=73.2
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---hCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASV---TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeek---tGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
|+|+||+++|+.+.++|++++||.+||++|+++ +|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999999876543
No 34
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=2.2e-16 Score=138.59 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=75.3
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-chhcccCCCCCCEEEEeeecCC
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDd-kTLSDYGIkdGSTIHLVlRlpg 93 (765)
....|+|+||++++ ++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ ++|++|+|++|++|+|++|+++
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 45679999999887 899999999999999999999999999999999999999999 9999999999999999999887
Q ss_pred CC
Q 004252 94 PS 95 (765)
Q Consensus 94 ~p 95 (765)
..
T Consensus 91 g~ 92 (94)
T 2kan_A 91 RA 92 (94)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 35
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=139.21 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=71.2
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.....|+|+||+ |+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|++|+.+
T Consensus 15 ~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 15 VPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp -----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred CCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 345679999998 899999999999999999999999999999999999999999999999999999999999999876
No 36
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.7e-16 Score=136.71 Aligned_cols=77 Identities=35% Similarity=0.555 Sum_probs=70.4
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
-|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|+|++|.+++
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999998764
No 37
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.66 E-value=3.1e-16 Score=141.22 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=74.9
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
..|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|+++++|||++|+++
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999876
No 38
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=9.4e-17 Score=140.41 Aligned_cols=74 Identities=18% Similarity=0.417 Sum_probs=70.1
Q ss_pred cEEEEEEeCCCcEEEEEec--CCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCCcchhcccCC-CCCCEEEEeeec
Q 004252 18 TIEIKIKTLDSQTYTLRVD--KQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVRQ 91 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVs--psdTV~dLKeKI-eektGIPPeqQRLIF~GKvLkDdkTLSDYGI-kdGSTIHLVlRl 91 (765)
+|+|+||+++|++++++|+ +++||.+||++| +++.|+|+++|||+|+||+|+|+.+|++|+| ++|++|+|+++.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 4999999999999998766 999999999999 9999999999999999999999999999999 799999999875
No 39
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.65 E-value=2e-16 Score=141.14 Aligned_cols=78 Identities=15% Similarity=0.394 Sum_probs=71.4
Q ss_pred CCCcEEEEEEeCCCcEEEE--EecCCCCHHHHHHHH-HHHhCCCCCCeEEEeCCeecCCcchhcccCC-CCCCEEEEeee
Q 004252 15 SETTIEIKIKTLDSQTYTL--RVDKQVPVPALKEQI-ASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVR 90 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftL--eVspsdTV~dLKeKI-eektGIPPeqQRLIF~GKvLkDdkTLSDYGI-kdGSTIHLVlR 90 (765)
....|+|+||+++|++|++ +|++++||.+||++| +++.|+|+++|||+|+||.|+|+.+|++|+| ++|++|+|+++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 4567999999999998777 566999999999999 8889999999999999999999999999999 99999999998
Q ss_pred cC
Q 004252 91 QP 92 (765)
Q Consensus 91 lp 92 (765)
++
T Consensus 96 kp 97 (98)
T 4a20_A 96 PN 97 (98)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 40
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.65 E-value=3.9e-16 Score=128.73 Aligned_cols=74 Identities=38% Similarity=0.678 Sum_probs=70.6
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
+.|+|+||+ +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||+.+.
T Consensus 3 M~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 3 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred eEEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 349999999 99999999999999999999999999999999999999999999999999999999999998764
No 41
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=137.95 Aligned_cols=79 Identities=28% Similarity=0.409 Sum_probs=74.1
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
....|+|+||+. |+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++++..
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 346799999998 8999999999999999999999999999999999999999999999999999999999999987653
No 42
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4e-16 Score=138.35 Aligned_cols=81 Identities=30% Similarity=0.429 Sum_probs=75.7
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
..+..|+|+||+.+|+ +.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.++
T Consensus 18 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp CCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 3446799999999886 799999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 004252 94 PS 95 (765)
Q Consensus 94 ~p 95 (765)
.+
T Consensus 97 ~p 98 (100)
T 1yqb_A 97 RA 98 (100)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 43
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=4.6e-16 Score=137.78 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=75.1
Q ss_pred CcEEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-chhcccCCCCCCEEEEeeec
Q 004252 17 TTIEIKIKTLDS----QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 17 stMqI~VKtLdG----KTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDd-kTLSDYGIkdGSTIHLVlRl 91 (765)
..|+|+||+..+ +++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+ ++|++|+|++|++|||+.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 569999999754 7999999999999999999999999999999999999999988 79999999999999999998
Q ss_pred CCCCCCC
Q 004252 92 PVPSSSD 98 (765)
Q Consensus 92 pg~psss 98 (765)
++.+..+
T Consensus 86 ~gg~~~~ 92 (102)
T 1v5o_A 86 NVGLRTP 92 (102)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 8765443
No 44
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=8.4e-16 Score=133.45 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=73.7
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCc-chhcccCCCCCCEEEEeeecC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDD-QLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDd-kTLSDYGIkdGSTIHLVlRlp 92 (765)
.++..|+|+||+++|+.+.++|++++||.+||++|++++ +++|||+|+||.|+|+ ++|++|+|++|++|||+++.+
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 345679999999999999999999999999999999987 8999999999999999 999999999999999999987
Q ss_pred CCCC
Q 004252 93 VPSS 96 (765)
Q Consensus 93 g~ps 96 (765)
....
T Consensus 80 ~~~~ 83 (95)
T 1wia_A 80 GAAV 83 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 45
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=1.2e-15 Score=140.36 Aligned_cols=86 Identities=16% Similarity=0.301 Sum_probs=76.6
Q ss_pred CCCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCC--CCCCeEEEeCCeecCCcchhcccCCCC
Q 004252 10 PGAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGV--LSEQQRLICRGKVLKDDQLLSAYHVED 81 (765)
Q Consensus 10 ~~ae~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIee------ktGI--PPeqQRLIF~GKvLkDdkTLSDYGIkd 81 (765)
+....+...|+|+||+++|++++++|++++||.+||++|++ ++++ ++++|||||.||+|+|+++|++|+|+.
T Consensus 8 ~~~~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~ 87 (116)
T 1wgh_A 8 MSSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPF 87 (116)
T ss_dssp CCCCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCS
T ss_pred ccCCCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCC
Confidence 44556677899999999999999999999999999999999 6675 699999999999999999999999976
Q ss_pred C--CEEEEeeecCCCC
Q 004252 82 G--HTLHMVVRQPVPS 95 (765)
Q Consensus 82 G--STIHLVlRlpg~p 95 (765)
+ .+|||++|.....
T Consensus 88 ~~~~tlhLvlr~~~~~ 103 (116)
T 1wgh_A 88 GKTTVMHLVARETLPE 103 (116)
T ss_dssp SCEEEEEEEECSSCSS
T ss_pred CCceEEEEEccCCCCC
Confidence 6 6899999987544
No 46
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.44 E-value=1.6e-17 Score=137.26 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=72.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999865
No 47
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=3.6e-16 Score=141.68 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=73.6
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC---------------CCeEEEeCCeecC-CcchhcccCC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS---------------EQQRLICRGKVLK-DDQLLSAYHV 79 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPP---------------eqQRLIF~GKvLk-DdkTLSDYGI 79 (765)
...|+|+||+++|+++.|+|.+++||.+||++|++++++|+ ++|||+|+||.|+ |+++|++|+|
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 35699999999999999999999999999999999999887 4679999999996 5699999999
Q ss_pred CCCCEEEEeeecCCCC
Q 004252 80 EDGHTLHMVVRQPVPS 95 (765)
Q Consensus 80 kdGSTIHLVlRlpg~p 95 (765)
++|++|||++++++..
T Consensus 85 ~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CSSEEEEEEECSCSCC
T ss_pred CCCCEEEEEehhccCC
Confidence 9999999999998753
No 48
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.63 E-value=7.4e-16 Score=134.48 Aligned_cols=76 Identities=37% Similarity=0.550 Sum_probs=73.7
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998764
No 49
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=1.4e-15 Score=140.41 Aligned_cols=80 Identities=30% Similarity=0.412 Sum_probs=71.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
...|+|+||+. |+++.++|++++||.+||++|++++++++++|||+|+||.|+|+++|.+|+|++|++|||++++.+..
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 46799999999 99999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred C
Q 004252 96 S 96 (765)
Q Consensus 96 s 96 (765)
.
T Consensus 109 ~ 109 (125)
T 1j8c_A 109 S 109 (125)
T ss_dssp -
T ss_pred C
Confidence 4
No 50
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=1.4e-15 Score=142.33 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=74.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
...|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|++|++|||++|++++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999998874
No 51
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=135.47 Aligned_cols=78 Identities=36% Similarity=0.528 Sum_probs=75.2
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
...|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++|+.+
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999999876
No 52
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=1.7e-15 Score=132.93 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=72.7
Q ss_pred CCCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 11 GAESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 11 ~ae~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
........|+|+||. .++++.++|++++||.+||++|++++|+|+++|||+|+||.| |+.+|++|+|+++++|||+.+
T Consensus 10 ~~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 10 GGGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred CCCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 344556789999995 799999999999999999999999999999999999999999 555999999999999999987
Q ss_pred cCC
Q 004252 91 QPV 93 (765)
Q Consensus 91 lpg 93 (765)
...
T Consensus 88 ~~~ 90 (95)
T 1v86_A 88 TIS 90 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 643
No 53
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.60 E-value=2.5e-15 Score=144.90 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=73.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|++++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998754
No 54
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=2.5e-15 Score=135.35 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=69.0
Q ss_pred cEEEEEEeCC----CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 18 TIEIKIKTLD----SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 18 tMqI~VKtLd----GKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
...|.|+..+ ++++.++|++++||.+||++|++++|+|+++|||||+||+|+|+++|++|+|++|++| +++++++
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 3466677776 7899999999999999999999999999999999999999999999999999999999 6666666
Q ss_pred CC
Q 004252 94 PS 95 (765)
Q Consensus 94 ~p 95 (765)
..
T Consensus 94 ~~ 95 (100)
T 1wju_A 94 SS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 55
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=4.7e-15 Score=128.06 Aligned_cols=78 Identities=26% Similarity=0.411 Sum_probs=71.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCC-----CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCC-cchhcccCCCCCCEEEEee
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQ-----VPVPALKEQIASVTGVLSEQQRLICRGKVLKD-DQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVsps-----dTV~dLKeKIeektGIPPeqQRLIF~GKvLkD-dkTLSDYGIkdGSTIHLVl 89 (765)
..+|+|+||+ .++.+.++|+++ +||.+||++|++++|+|+++|||+|+||.|+| +++|++|+|++|++|||+.
T Consensus 5 ~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 4579999998 589999999985 99999999999999999999999999999998 5689999999999999998
Q ss_pred ecCCC
Q 004252 90 RQPVP 94 (765)
Q Consensus 90 Rlpg~ 94 (765)
+....
T Consensus 84 ~~~~~ 88 (92)
T 1wxv_A 84 KKNSG 88 (92)
T ss_dssp CCSCS
T ss_pred cCCCC
Confidence 76554
No 56
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.1e-15 Score=133.69 Aligned_cols=80 Identities=26% Similarity=0.332 Sum_probs=72.8
Q ss_pred CCcEEEEEEeCCC---cEEEEEec--------C-CCCHHHHHHHHHHHh--CCCCCC-eEEEeCCeecCCcchhcccCCC
Q 004252 16 ETTIEIKIKTLDS---QTYTLRVD--------K-QVPVPALKEQIASVT--GVLSEQ-QRLICRGKVLKDDQLLSAYHVE 80 (765)
Q Consensus 16 ~stMqI~VKtLdG---KTftLeVs--------p-sdTV~dLKeKIeekt--GIPPeq-QRLIF~GKvLkDdkTLSDYGIk 80 (765)
...|+|+||+.++ +++.++|+ + ++||.+||++|++++ ++|+++ |||+|+||.|+|+++|++|+|+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 3569999999999 89999954 4 499999999999999 999999 9999999999999999999999
Q ss_pred CCCEEEEeeecCCCC
Q 004252 81 DGHTLHMVVRQPVPS 95 (765)
Q Consensus 81 dGSTIHLVlRlpg~p 95 (765)
+|++|||+++.+..+
T Consensus 90 ~g~~i~lv~~~~~~~ 104 (107)
T 1x1m_A 90 PGSTVHVLRKSWSGP 104 (107)
T ss_dssp TTCEEEEEESSCCSS
T ss_pred CCCEEEEEeCCCCCC
Confidence 999999999876543
No 57
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.59 E-value=2.3e-15 Score=134.96 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=74.9
Q ss_pred CcEEEEEEeC---CCcEEEEEecC-CCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 17 TTIEIKIKTL---DSQTYTLRVDK-QVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 17 stMqI~VKtL---dGKTftLeVsp-sdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
..|+|+||++ +|+.+.++|++ ++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||+++++
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~ 105 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRER 105 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSC
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcC
Confidence 5699999999 89999999998 9999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 004252 93 VP 94 (765)
Q Consensus 93 g~ 94 (765)
++
T Consensus 106 GG 107 (111)
T 1we6_A 106 SG 107 (111)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 58
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=135.32 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=66.1
Q ss_pred CCCCcEEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHH-hCCC-CCCeEEEeCCeecCCcchhccc--CCCCCCEEEE
Q 004252 14 SSETTIEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASV-TGVL-SEQQRLICRGKVLKDDQLLSAY--HVEDGHTLHM 87 (765)
Q Consensus 14 ~s~stMqI~VKtLdGK--TftLeVspsdTV~dLKeKIeek-tGIP-PeqQRLIF~GKvLkDdkTLSDY--GIkdGSTIHL 87 (765)
.....|+|+||+++++ +++++|++++||.+||++|+++ .|+| +++|||||+||.|+|+++|++| +|+++++|||
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 3446799999999998 6789999999999999999986 5666 4999999999999999999999 9999999998
Q ss_pred e
Q 004252 88 V 88 (765)
Q Consensus 88 V 88 (765)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 6
No 59
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.58 E-value=3.9e-15 Score=129.16 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=71.6
Q ss_pred CCcEEEEEEeCCCcEEEE-EecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 16 ETTIEIKIKTLDSQTYTL-RVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftL-eVspsdTV~dLKeKIeektGIPPeqQRLI---F~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
..+|+|+||. .|++|.+ +|++++||.+||++|++++|+|+++|||+ |+||.|+|+.+|++|+|++|++|||+...
T Consensus 5 ~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 4579999997 7999999 99999999999999999999999999999 99999999999999999999999999765
Q ss_pred C
Q 004252 92 P 92 (765)
Q Consensus 92 p 92 (765)
.
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 4
No 60
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.57 E-value=4.2e-15 Score=138.26 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=72.6
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HhCCC--CCCeEEEeCCeecCCcchhcccCCCCCC--EE
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS------VTGVL--SEQQRLICRGKVLKDDQLLSAYHVEDGH--TL 85 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIee------ktGIP--PeqQRLIF~GKvLkDdkTLSDYGIkdGS--TI 85 (765)
.+.|+|+||+++|++++++|++++||.+||++|++ ++++| +++|||||.||.|+|+++|++|+|++++ +|
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45699999999999999999999999999999998 77884 8999999999999999999999999765 89
Q ss_pred EEeeecCCC
Q 004252 86 HMVVRQPVP 94 (765)
Q Consensus 86 HLVlRlpg~ 94 (765)
||++|....
T Consensus 95 hlv~r~~~~ 103 (125)
T 2gow_A 95 HLVARETLP 103 (125)
T ss_dssp EEEECSCCS
T ss_pred EEEecCCCC
Confidence 999998764
No 61
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=8.3e-15 Score=129.18 Aligned_cols=76 Identities=21% Similarity=0.392 Sum_probs=71.0
Q ss_pred CCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 16 ETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 16 ~stMqI~VKtLdGKTf-tLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
..+|+|+||. .|++| .++|++++||.+||++|++++|+|+++|||+|+||.|+|+ +|++|+|++|++|||+.+...
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~ 81 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADA 81 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecchh
Confidence 4579999996 78999 6999999999999999999999999999999999999999 999999999999999987653
No 62
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.56 E-value=4.2e-15 Score=137.53 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=65.0
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCC-------CCCEEEEeee
Q 004252 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVE-------DGHTLHMVVR 90 (765)
Q Consensus 19 MqI~VKtLdGK-TftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIk-------dGSTIHLVlR 90 (765)
|.++|+...++ ++.++|++++||.+||++|++++|||+++|||+|+||.|+|+++|++|+|+ ++++|||++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 34444444455 699999999999999999999999999999999999999999999999999 7999999999
No 63
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.6e-15 Score=134.83 Aligned_cols=74 Identities=38% Similarity=0.678 Sum_probs=69.4
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
..|+|+||+ +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+++.
T Consensus 27 m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 27 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp --CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred cEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 568899998 89999999999999999999999999999999999999999999999999999999999999874
No 64
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.56 E-value=8.8e-15 Score=136.73 Aligned_cols=79 Identities=25% Similarity=0.424 Sum_probs=72.4
Q ss_pred CCcEEEEEEeCCCcEE-EEEecCCCCHHHHHHHH-----HHHhCCCC--CCeEEEeCCeecCCcchhcccCCCCC-----
Q 004252 16 ETTIEIKIKTLDSQTY-TLRVDKQVPVPALKEQI-----ASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDG----- 82 (765)
Q Consensus 16 ~stMqI~VKtLdGKTf-tLeVspsdTV~dLKeKI-----eektGIPP--eqQRLIF~GKvLkDdkTLSDYGIkdG----- 82 (765)
...|+|+||+++|+.+ .+++++++||.+||++| ++++++|+ ++|||||.||.|+|+++|++|+|+++
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 3689999999999988 69999999999999999 45678887 89999999999999999999999988
Q ss_pred -CEEEEeeecCCC
Q 004252 83 -HTLHMVVRQPVP 94 (765)
Q Consensus 83 -STIHLVlRlpg~ 94 (765)
.+|||++++++.
T Consensus 94 v~tmhlVlrl~g~ 106 (126)
T 1se9_A 94 VTTMHVIIQAPVT 106 (126)
T ss_dssp CEEEEEEECCCSS
T ss_pred cEEEEEEeccCCc
Confidence 689999998864
No 65
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=133.17 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=74.9
Q ss_pred CCCCCcEEEEEE-eCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 13 ESSETTIEIKIK-TLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 13 e~s~stMqI~VK-tLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
+..+..|.|+|+ ..+++.++++++++.||.+||++++++.++|+++|||+|+||.|+|+.+|.+|||++|.||||+++.
T Consensus 10 ~~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 10 SVEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CCCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred cccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 344567889988 5578899999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 004252 92 PVP 94 (765)
Q Consensus 92 pg~ 94 (765)
..+
T Consensus 90 ~~p 92 (118)
T 2daf_A 90 TNP 92 (118)
T ss_dssp SCT
T ss_pred CCC
Confidence 553
No 66
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.55 E-value=8.4e-15 Score=144.59 Aligned_cols=78 Identities=36% Similarity=0.493 Sum_probs=75.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
-.|+|+||+++|+++.++|++++||.+||++|++++++|+++|||+|+||.|+|+++|++|+|++|++|||++++.+.
T Consensus 104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 359999999999999999999999999999999999999999999999999999999999999999999999998874
No 67
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.55 E-value=6.5e-15 Score=136.38 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=67.9
Q ss_pred EEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCC-------CCEEEEeee
Q 004252 19 IEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVED-------GHTLHMVVR 90 (765)
Q Consensus 19 MqI~VKtLdGK-TftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkd-------GSTIHLVlR 90 (765)
|.+||+...+| ++.++|++++||.+||++|++++|+|+++|||||+||+|+|+++|++|||++ +++|||++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 55666666566 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred cC
Q 004252 91 QP 92 (765)
Q Consensus 91 lp 92 (765)
..
T Consensus 81 ~~ 82 (118)
T 4ajy_B 81 AD 82 (118)
T ss_dssp CS
T ss_pred cC
Confidence 63
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.55 E-value=8.6e-15 Score=139.25 Aligned_cols=77 Identities=36% Similarity=0.540 Sum_probs=71.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
..|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+++
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999876
No 69
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.54 E-value=1.8e-14 Score=131.99 Aligned_cols=77 Identities=36% Similarity=0.540 Sum_probs=74.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
..|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|||++|+++
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999876
No 70
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.54 E-value=2e-14 Score=129.74 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=73.3
Q ss_pred CcEEEEEEeC----------CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEE
Q 004252 17 TTIEIKIKTL----------DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLH 86 (765)
Q Consensus 17 stMqI~VKtL----------dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIH 86 (765)
..|+|+|+.. +|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+.+|++|+|++|++||
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4688998886 478999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q 004252 87 MVVRQPVP 94 (765)
Q Consensus 87 LVlRlpg~ 94 (765)
|+++++++
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99998874
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.53 E-value=7.3e-16 Score=141.73 Aligned_cols=77 Identities=36% Similarity=0.538 Sum_probs=0.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999988753
No 72
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.52 E-value=2.9e-14 Score=129.51 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=71.9
Q ss_pred CCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCC-CCCCEEEEeeec
Q 004252 15 SETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHV-EDGHTLHMVVRQ 91 (765)
Q Consensus 15 s~stMqI~VKtLdG--KTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGI-kdGSTIHLVlRl 91 (765)
.+..|+|+|+...+ .+++++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|.+||| ++|+++||++-.
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 35679999999885 789999999999999999999999999999999999999999999999999 599999999864
Q ss_pred C
Q 004252 92 P 92 (765)
Q Consensus 92 p 92 (765)
.
T Consensus 101 ~ 101 (105)
T 4dbg_A 101 A 101 (105)
T ss_dssp C
T ss_pred c
Confidence 3
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=2.9e-14 Score=122.66 Aligned_cols=73 Identities=30% Similarity=0.494 Sum_probs=67.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
.++.+.+ +++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|++|++|+|+.+
T Consensus 11 ~~~~~~~-~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 11 STIKLTV-KFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp CCEEEEE-EETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred CcEEEEE-EECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4555544 568999999999999999999999999999999999999999999999999999999999999875
No 74
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7.3e-14 Score=125.41 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=70.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF--~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
+...|.++++++.|++++|+|++++||.+||++|++++||||++|||+| .|+ |+|+.+|++|+|++|++|||+++..
T Consensus 5 ~~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 5 SSGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CCCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred CCcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 3346888888889999999999999999999999999999999999996 566 9999999999999999999998765
Q ss_pred C
Q 004252 93 V 93 (765)
Q Consensus 93 g 93 (765)
.
T Consensus 84 ~ 84 (100)
T 2dzm_A 84 P 84 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.46 E-value=4.6e-15 Score=141.78 Aligned_cols=77 Identities=36% Similarity=0.547 Sum_probs=0.0
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|++|++|||++++.++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998763
No 76
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.46 E-value=4.7e-14 Score=151.32 Aligned_cols=79 Identities=29% Similarity=0.500 Sum_probs=72.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH---HhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEE-EEeeec
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIAS---VTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTL-HMVVRQ 91 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIee---ktGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTI-HLVlRl 91 (765)
+..|+|+||+++|++|.|+|++++||.+||++|++ ++||++++|||||+||+|+|+++|++|+|++|++| ||+.|.
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 35799999999999999999999999999999999 67899999999999999999999999999999999 666666
Q ss_pred CCC
Q 004252 92 PVP 94 (765)
Q Consensus 92 pg~ 94 (765)
++.
T Consensus 85 ~~~ 87 (368)
T 1oqy_A 85 KAG 87 (368)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.43 E-value=3.8e-13 Score=119.20 Aligned_cols=75 Identities=20% Similarity=0.378 Sum_probs=67.4
Q ss_pred CCCCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--Ce---ec-CCcchhcccCCCCCCEE
Q 004252 14 SSETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR--GK---VL-KDDQLLSAYHVEDGHTL 85 (765)
Q Consensus 14 ~s~stMqI~VKtLdG--KTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~--GK---vL-kDdkTLSDYGIkdGSTI 85 (765)
.++..++|+|+...+ +.++++|++++||.+||++|++++|||+++|||+|. || .| +|+++|++|+|++|++|
T Consensus 11 ~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 11 GKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 346789999998766 488999999999999999999999999999999998 55 44 89999999999999999
Q ss_pred EEe
Q 004252 86 HMV 88 (765)
Q Consensus 86 HLV 88 (765)
||+
T Consensus 91 hlv 93 (95)
T 2kjr_A 91 HVV 93 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 78
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2e-13 Score=119.06 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=65.7
Q ss_pred CCcEEEEEEeCCCcEE--EE-EecCCCCHHHHHHHHHHH-hCCCCCCeEEEeC--CeecCCcchhcccCCCCCCEEEE
Q 004252 16 ETTIEIKIKTLDSQTY--TL-RVDKQVPVPALKEQIASV-TGVLSEQQRLICR--GKVLKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 16 ~stMqI~VKtLdGKTf--tL-eVspsdTV~dLKeKIeek-tGIPPeqQRLIF~--GKvLkDdkTLSDYGIkdGSTIHL 87 (765)
...|+|+||++.|+.+ .+ +|++++||.+||++|+++ .++++++|||+|. ||.|+|+++|++|+|+++++|||
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 3469999999998775 58 999999999999999994 8999999999976 99999999999999999999886
No 79
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.42 E-value=1.7e-13 Score=119.40 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=65.8
Q ss_pred cEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-------CCeecCCcchhcccCCCCCCEEEEe
Q 004252 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-------RGKVLKDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 18 tMqI~VKt--LdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF-------~GKvLkDdkTLSDYGIkdGSTIHLV 88 (765)
.++|.|.. .+.+.+.+++++++||.+||++|+.++|+|+++|||+| .||.|+|+++|++|+|++|++|||+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 45666654 34567889999999999999999999999999999997 4789999999999999999999999
Q ss_pred eecC
Q 004252 89 VRQP 92 (765)
Q Consensus 89 lRlp 92 (765)
-+.|
T Consensus 82 d~~P 85 (86)
T 4b6w_A 82 DLQP 85 (86)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 7654
No 80
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.41 E-value=3.5e-13 Score=141.74 Aligned_cols=80 Identities=35% Similarity=0.538 Sum_probs=74.0
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 13 e~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
.+....|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+||.|+|+++|++|+|+++++|||++|++
T Consensus 228 ~~~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 228 AGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp ESSCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred cCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999863
No 81
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=1e-12 Score=117.12 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=66.6
Q ss_pred CCcEEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCCcchhcccCCCCCCEEE
Q 004252 16 ETTIEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLH 86 (765)
Q Consensus 16 ~stMqI~VKtLdG--KTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G---Kv----LkDdkTLSDYGIkdGSTIH 86 (765)
+..+.|+|++... +.+.++|++++||.+||++|+.++|||+++|||+|.| |. ++|+++|++|+|++|++||
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 4578888887544 4789999999999999999999999999999999988 33 4889999999999999999
Q ss_pred Eeee
Q 004252 87 MVVR 90 (765)
Q Consensus 87 LVlR 90 (765)
|+-.
T Consensus 92 lvd~ 95 (97)
T 2kj6_A 92 IIDL 95 (97)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9864
No 82
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.37 E-value=7.6e-13 Score=118.58 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=68.6
Q ss_pred CcEEEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----------e----cCCcchhcccCCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVD-KQVPVPALKEQIASVTGVLSEQQRLICRGK-----------V----LKDDQLLSAYHVE 80 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVs-psdTV~dLKeKIeektGIPPeqQRLIF~GK-----------v----LkDdkTLSDYGIk 80 (765)
..|.|+||+.+|+. .|+|+ +++||.+||++|++++++|+++|||+|.|+ . ++|+++|++|+|+
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 34999999999976 79999 999999999999999999999999999988 4 5889999999999
Q ss_pred CCCEEEEeeecC
Q 004252 81 DGHTLHMVVRQP 92 (765)
Q Consensus 81 dGSTIHLVlRlp 92 (765)
+|++|||+....
T Consensus 85 ~G~~L~l~~~~~ 96 (107)
T 1wf9_A 85 HGSMVYLAYEGE 96 (107)
T ss_dssp TTCEEECCCSSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998743
No 83
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.8e-12 Score=113.42 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=66.9
Q ss_pred CCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCCcchhcccCCCCCCEEEE
Q 004252 16 ETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 16 ~stMqI~VKtLdGK-TftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G---Kv----LkDdkTLSDYGIkdGSTIHL 87 (765)
...|.|+|+..... .+.++|++++||.+||++|++++|+|+++|||+|.| +. ++|+++|++|+|++|++|||
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 34589999986543 688999999999999999999999999999999986 43 58999999999999999999
Q ss_pred eeec
Q 004252 88 VVRQ 91 (765)
Q Consensus 88 VlRl 91 (765)
+-..
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8754
No 84
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=1.5e-12 Score=115.19 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=75.5
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
....|+|+||+.+|+.+.++|.+++++..||++++++.|++++++||+|.|+.|++++|+++|++++|++|+|++++.+.
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998775
No 85
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.34 E-value=3.3e-12 Score=117.06 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=67.2
Q ss_pred CcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC---ee----cCCcchhcccCCCCCCEEEEe
Q 004252 17 TTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG---KV----LKDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 17 stMqI~VKtLdGK-TftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G---Kv----LkDdkTLSDYGIkdGSTIHLV 88 (765)
..|.|+|++.... .+.++|++++||.+||++|+.++|+|+++|||+|.| +. ++|+++|.+|+|++|++|||+
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4699999986553 688999999999999999999999999999999987 42 489999999999999999999
Q ss_pred eecC
Q 004252 89 VRQP 92 (765)
Q Consensus 89 lRlp 92 (765)
...+
T Consensus 85 d~~p 88 (122)
T 1t0y_A 85 DVTG 88 (122)
T ss_dssp ECTT
T ss_pred eCCC
Confidence 8543
No 86
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.31 E-value=1.6e-13 Score=135.78 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=0.4
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCCC
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVPS 95 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~p 95 (765)
|+|+||+++|++++|+|++++||.+||++|++++|||+++|||||+|++|+|+.+|+ +++||||++|+++..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 899999999999999999999999999999999999999999999999999999998 899999999988754
No 87
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.9e-11 Score=107.84 Aligned_cols=78 Identities=17% Similarity=0.315 Sum_probs=75.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
..|+|+||+.+|+.+.++|.+++++..||++++++.|++++++||+|+|+.|+++.|.++|++++|++|++++++.++
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999998774
No 88
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=2.5e-11 Score=109.59 Aligned_cols=81 Identities=16% Similarity=0.322 Sum_probs=76.9
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
....|+|+|+..+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.++.|+.+|++++|++|+|++++.+.
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred C
Q 004252 95 S 95 (765)
Q Consensus 95 p 95 (765)
.
T Consensus 101 ~ 101 (104)
T 1wz0_A 101 P 101 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.25 E-value=2.1e-11 Score=107.48 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=73.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
....|+|+|+..+|+.+.+.|.+++++..||++++++.|++++.+||+|.|+.|.++.|+.+|++++|++|++++++.+
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999998765
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.22 E-value=4.1e-11 Score=100.44 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=69.3
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
.|+|+|+..+|+.+.+.|.+++++..||++++++.|++++++||+|.|+.|.++.|.++|++++|++|++++
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999973
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.22 E-value=1.3e-11 Score=106.06 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=64.9
Q ss_pred EEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCeEEEeC--CeecC---CcchhcccCCCCCCEEEEeeec
Q 004252 19 IEIKIKTLDSQTYTLR-VDKQVPVPALKEQIASVTGVLSEQQRLICR--GKVLK---DDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 19 MqI~VKtLdGKTftLe-VspsdTV~dLKeKIeektGIPPeqQRLIF~--GKvLk---DdkTLSDYGIkdGSTIHLVlRl 91 (765)
|+|+||+.+|+.. ++ |++++||.+||++|++++|+++++|||+|+ +|.|+ |+++|++|||++|++|||....
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 7899999999654 77 999999999999999999999999999987 48874 6889999999999999998764
No 92
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.20 E-value=5.1e-11 Score=108.79 Aligned_cols=81 Identities=14% Similarity=0.278 Sum_probs=76.2
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.....|+|+|++.+|+.+.+.|.+++++..||++++++.|++++++||+|.|+.|.+++|+.+|++++|++|+|++.+.+
T Consensus 22 ~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 004252 94 P 94 (765)
Q Consensus 94 ~ 94 (765)
.
T Consensus 102 g 102 (110)
T 2k8h_A 102 G 102 (110)
T ss_dssp C
T ss_pred c
Confidence 3
No 93
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.20 E-value=6.6e-11 Score=107.51 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=73.6
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.....|+|+|++ +|+.+.++|.+++++..||++++++.|++++.+||+|.|+.|.+++|.++|++++|++|++++++.+
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence 345679999999 9999999999999999999999999999999999999999999999999999999999999998765
No 94
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.19 E-value=1.6e-11 Score=129.39 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=69.1
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI---F~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
..+|+|+||. .|++|.++|++++||.+||++|++++|||+++|||+ |+||.|+|+.+|++|+|++|++|||+....
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 3579999996 799999999999999999999999999999999999 899999999999999999999999997644
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.18 E-value=1.2e-10 Score=99.48 Aligned_cols=73 Identities=11% Similarity=0.297 Sum_probs=69.9
Q ss_pred CCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEe
Q 004252 16 ETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 16 ~stMqI~VKtLdGK-TftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLV 88 (765)
...|+|+|+..+|+ .+.+.|.+++++..||++++++.|++++++||+|.|+.|.+++|..+|++++|++|+++
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35799999999996 89999999999999999999999999999999999999999999999999999999986
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.04 E-value=7.2e-10 Score=97.11 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=66.8
Q ss_pred CCcEEEEEEe---CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC------ee-c-CCcchhcccCCCCCCE
Q 004252 16 ETTIEIKIKT---LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG------KV-L-KDDQLLSAYHVEDGHT 84 (765)
Q Consensus 16 ~stMqI~VKt---LdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G------Kv-L-kDdkTLSDYGIkdGST 84 (765)
...++|+|++ .+++.+.+++.+++||.+||.+|+..+|+|+..|||+|.+ .. | +|+++|.+|+|++|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 4568898886 4688899999999999999999999999999999999873 22 5 6778999999999999
Q ss_pred EEEeeecC
Q 004252 85 LHMVVRQP 92 (765)
Q Consensus 85 IHLVlRlp 92 (765)
|||....+
T Consensus 87 I~V~d~~p 94 (97)
T 1wjn_A 87 LLVRWSGP 94 (97)
T ss_dssp EEEECCSS
T ss_pred EEEEecCC
Confidence 99987543
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.86 E-value=1.1e-08 Score=94.55 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=73.0
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
...|+|+|+..+|+.+.+.|.+++++..|++.++++.|++++.+||+|.|+.|.++.|..++++++|++|++++.+.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998764
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.67 E-value=6.1e-08 Score=96.86 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=75.8
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.....|+|+|+ .+|+.+.+.|.+++++..||+.++++.|++++++|++|.|+.|.++.|..++++++|++|++++.+.+
T Consensus 25 ~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 25 KPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 44567999997 49999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 004252 94 PS 95 (765)
Q Consensus 94 ~p 95 (765)
..
T Consensus 104 g~ 105 (200)
T 3pge_A 104 GG 105 (200)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.64 E-value=5e-08 Score=97.51 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=74.3
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
++...|+|+|+. +|+.+.+.|.+++++..||+.++++.|+++..+|++|+|+.|.+++|..+++++||++|++++.+.+
T Consensus 53 dp~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 53 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp --CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred CCCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 345679999974 9999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred C
Q 004252 94 P 94 (765)
Q Consensus 94 ~ 94 (765)
.
T Consensus 132 G 132 (207)
T 3tix_A 132 G 132 (207)
T ss_dssp T
T ss_pred C
Confidence 5
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.33 E-value=6.4e-08 Score=97.82 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=0.5
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.+...|+|+| ..+|+.+.++|.+++++..||+.++++.|++++.+|++|+|+.|.+++|.++++++||++|+++..+.+
T Consensus 17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 4456899999 779999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 004252 94 P 94 (765)
Q Consensus 94 ~ 94 (765)
+
T Consensus 96 G 96 (227)
T 3v7o_A 96 G 96 (227)
T ss_dssp C
T ss_pred C
Confidence 5
No 101
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.22 E-value=6.3e-06 Score=73.99 Aligned_cols=76 Identities=12% Similarity=0.319 Sum_probs=70.5
Q ss_pred CCCCCcEEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEe
Q 004252 13 ESSETTIEIKIKTLDSQ-TYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 13 e~s~stMqI~VKtLdGK-TftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLV 88 (765)
......|+|+|+..+++ .+.+.|.+++++..|.+..+++.|++++..|++|.|+.|.++.|..++++++|++|.++
T Consensus 20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34557899999998885 88999999999999999999999999999999999999999999999999999999875
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.20 E-value=7.2e-07 Score=76.78 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=60.0
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCee---c--CCcchhcccCCCCCCEEEEe
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKV---L--KDDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKv---L--kDdkTLSDYGIkdGSTIHLV 88 (765)
+.|.|.||+.+| ++.++|++++|+.+||++|+++++++++.|.|.+.-.. | .++.+|+++||++|++|+|.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358999999876 67788999999999999999999999988887665443 3 47789999999999999875
No 103
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.11 E-value=1.5e-05 Score=69.74 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=68.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPe-qQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
+.|.+.++......+.+.|.++.+|.+|-+..+++.+|+++ ..||.|.|..|+.+.++.||+++||+.|.+++
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 46788889888888999999999999999999999999999 99999999999999999999999999999886
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.06 E-value=1.1e-05 Score=80.20 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=75.0
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
-+...|.|+|+. +++.+.++|..++++..||+.++++.|++++++|++|.|+.+.++++..++.++++++|.++.++.+
T Consensus 17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 345789999998 8888899999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 004252 94 PS 95 (765)
Q Consensus 94 ~p 95 (765)
..
T Consensus 96 g~ 97 (209)
T 3uf8_A 96 GS 97 (209)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 105
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.87 E-value=7.6e-05 Score=67.18 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 13 ESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 13 e~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
......|.|+|+. +|....+.+..++....|.+..+++.|+.+...|++|.|..+.++.|-.+++++++++|.+++-.
T Consensus 16 ~~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 16 PETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp CSCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred CCCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 3445569999995 78999999999999999999999999999999999999999999999999999999999998753
No 106
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.87 E-value=1.9e-06 Score=92.79 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=0.0
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.+...|+|+|+. +|+.+.++|..++++..||+.++++.|++++.+|++|+|+.|.++.|.+++++++|++|+++.++.+
T Consensus 17 ~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 345689999997 7888899999999999999999999999999999999999999999999999999999999999877
Q ss_pred C
Q 004252 94 P 94 (765)
Q Consensus 94 ~ 94 (765)
.
T Consensus 96 ~ 96 (360)
T 3ix6_A 96 G 96 (360)
T ss_dssp -
T ss_pred h
Confidence 3
No 107
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.82 E-value=2.5e-06 Score=90.88 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
....|.|+|+. +++.+.++|..++++..||+.++++.|++++++|++|+|+.|.+++|.+++++++|++|++++.+.+.
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 44678899987 78888899999999999999999999999999999999999999999999999999999999998764
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.69 E-value=7.2e-05 Score=67.06 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=51.6
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeec--CCcchhcccCC-CCCCEEEEee
Q 004252 21 IKIKTL-DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVL--KDDQLLSAYHV-EDGHTLHMVV 89 (765)
Q Consensus 21 I~VKtL-dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvL--kDdkTLSDYGI-kdGSTIHLVl 89 (765)
|+|=.+ ..+.+.+.+.+++||..||++|++++|||+++|+|+|.||.| +.++.-..|-- ....-|.|+-
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 444334 467889999999999999999999999999999999999876 44455555543 2234444443
No 109
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.30 E-value=0.0003 Score=66.22 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=59.6
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-------------------------------------CeEEE
Q 004252 20 EIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-------------------------------------QQRLI 62 (765)
Q Consensus 20 qI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPe-------------------------------------qQRLI 62 (765)
.|+|+.+||+..++.|+.+.+|.+++..|+.+.||+.. +|||-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 68999999999999999999999999999999998854 34443
Q ss_pred e--CCeecCCcchhcccCCCCCCEEEEeee
Q 004252 63 C--RGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 63 F--~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
. ....|+++++|.++||.++++|.|-.+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 2 235678899999999999999766543
No 110
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.19 E-value=0.00064 Score=59.41 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=60.5
Q ss_pred CcEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHhCCCC-----CCeEEEeCCeecCCcchhcccCCCCCCEEEE
Q 004252 17 TTIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVTGVLS-----EQQRLICRGKVLKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 17 stMqI~VKt--LdGKTftLeVspsdTV~dLKeKIeektGIPP-----eqQRLIF~GKvLkDdkTLSDYGIkdGSTIHL 87 (765)
+-|+|+|.. -.++.+.++++...||++|++.+.+.++++. ...|+.-++..|.+++.|+||+|.+|+.|.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 346677764 4789999999999999999999999988655 2357778899999999999999999999875
No 111
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.03 E-value=0.0014 Score=58.58 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=70.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
.-|.|.|-..+++..++.|.+++++.++-++.++++|+.+++-.|.|++|.|+-+..+.-.||.+|++|.|+.+...
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999977543
No 112
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.89 E-value=0.0047 Score=52.89 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=63.4
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec---CCcchhcccCCCCCCEEEEee
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL---KDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI--F~GKvL---kDdkTLSDYGIkdGSTIHLVl 89 (765)
++...+|.||..+|+.+.-.+..++||.+|++.|.. .+.++...+|+ |-.|.| +.+++|.++|+.+..+|+|-.
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 345788999999999999999999999999999988 67788888998 457888 356899999999999988754
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.61 E-value=0.015 Score=52.61 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=65.9
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC---CcchhcccCCCCCCEEEEeee
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK---DDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI--F~GKvLk---DdkTLSDYGIkdGSTIHLVlR 90 (765)
....+|.||..+|+.+.-++..++||.+|++.|....+.+.....|+ |-.|.|. .+++|.+.|+.+..+|++...
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 34689999999999999999999999999999999888777778887 4578886 368999999999988888765
Q ss_pred cCC
Q 004252 91 QPV 93 (765)
Q Consensus 91 lpg 93 (765)
...
T Consensus 91 ~~~ 93 (109)
T 2dzk_A 91 GRP 93 (109)
T ss_dssp SSC
T ss_pred cCC
Confidence 433
No 114
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.33 E-value=0.00029 Score=63.62 Aligned_cols=63 Identities=8% Similarity=0.007 Sum_probs=46.1
Q ss_pred eecCCcchhcccCCCCCCEEEEeeecCCCCCCCCCCCCCCCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 66 KVLKDDQLLSAYHVEDGHTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 66 KvLkDdkTLSDYGIkdGSTIHLVlRlpg~psss~~~I~v~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
+.|.-.+.+.+-|+- ||++.++... ..++.+.++|++++||..||.+|+ ++|+|+++|||||+
T Consensus 2 ~k~~~~~~f~~tg~a---ti~V~~~~~~-----------~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 2 SSGSSGDNYRTTGIA---TIEVFLPPRL-----------KKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp CCCCCCCSSSCCCEE---EEEEECCTTT-----------CCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred CcchhhhhhhhcceE---EEEEEecCCC-----------CCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 444444444454543 6666543211 335788999999999999999999 99999999999987
No 115
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.25 E-value=0.00011 Score=65.83 Aligned_cols=38 Identities=5% Similarity=-0.064 Sum_probs=36.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+++.++|||++||.+|+ ++|+|+++|||+|+
T Consensus 29 ~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 29 RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp TTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 678999999999999999999999 99999999999885
No 116
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.20 E-value=0.016 Score=53.69 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=63.8
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeec--C-CcchhcccCCCCCCEEEEee
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVL--K-DDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI--F~GKvL--k-DdkTLSDYGIkdGSTIHLVl 89 (765)
.....+|.||..+|+.+.-++..++||.+|.+.|... +.++...+|+ |-.|.| . .+++|.+.|+.+..+|+|..
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 3457899999999999999999999999999999886 7777888888 557888 3 36899999999988888764
Q ss_pred e
Q 004252 90 R 90 (765)
Q Consensus 90 R 90 (765)
.
T Consensus 119 ~ 119 (124)
T 1wj4_A 119 S 119 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 117
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=96.13 E-value=0.00089 Score=66.58 Aligned_cols=39 Identities=5% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFav 143 (765)
.+|++++++|++++||++||.+|+ .+|||+++|||||+.
T Consensus 8 L~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~G 47 (189)
T 2xzm_9 8 LEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNG 47 (189)
T ss_dssp ----------------------------------------
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecC
Confidence 568899999999999999999999 999999999999973
No 118
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=95.96 E-value=0.00011 Score=62.20 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=37.7
Q ss_pred CCCCCEEEEeeecCCCCCCCCCCCCC--CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 79 VEDGHTLHMVVRQPVPSSSDGTHNLP--GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 79 IkdGSTIHLVlRlpg~psss~~~I~v--~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
+.++++++++++.+. .+.+++ ..|+.+.+.+++++||..||.+|+ +.|+|+++|||+|+
T Consensus 2 ~~~~~~~~~~~~~~~-----~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 2 MEPNDSTSTAVEEPD-----SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp -------------CC-----EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCCceEEeecCCC-----eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 344566666654332 233333 567888899999999999999999 89999999999875
No 119
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.78 E-value=0.083 Score=47.57 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE--eCCeecC--CcchhcccCCCCCCEEEEeee
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI--CRGKVLK--DDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI--F~GKvLk--DdkTLSDYGIkdGSTIHLVlR 90 (765)
....+|.||..+|+.+.-++..++||.+|.+.|..+ +..+...+|+ |-.|.|. .+++|.+.|+.+..+|+|..+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 467999999999999999999999999999999865 5566778887 5578885 468999999999988877654
No 120
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.54 E-value=0.00038 Score=62.80 Aligned_cols=38 Identities=5% Similarity=-0.115 Sum_probs=35.7
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|.+++||++||.+|+ ++|+|+++|||+|+
T Consensus 36 l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 36 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 567889999999999999999999 99999999999977
No 121
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.29 E-value=0.049 Score=50.51 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=59.1
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHh-CCCCCCeEEE--eCCeecCC-cchhcccCCCCCCEEE
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVT-GVLSEQQRLI--CRGKVLKD-DQLLSAYHVEDGHTLH 86 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeekt-GIPPeqQRLI--F~GKvLkD-dkTLSDYGIkdGSTIH 86 (765)
++....+|.||..||+.+.-++..++||.+|++.|.... +.......|+ |-.|.|.| +++|.+.|+.+..+|.
T Consensus 48 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 48 EAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp TTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 344568899999999999999999999999999998863 3556677887 45788875 5899999998855443
No 122
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.00063 Score=59.40 Aligned_cols=38 Identities=8% Similarity=-0.076 Sum_probs=34.0
Q ss_pred CCCCCcccccc--cCcccccccccc-c-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVA--PSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVs--pSdTIesVKv~I-q-kEGIPpdqQRLIFa 142 (765)
..|++++++|+ +++||..||.+| + ++|+|+++|||||+
T Consensus 9 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 9 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 50 (87)
T ss_dssp CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET
T ss_pred CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC
Confidence 56777888766 999999999999 7 89999999999986
No 123
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.00067 Score=60.13 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=36.2
Q ss_pred cchhcccCCCCCCEEEEeeecCCCCCCCCCCCCC-CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 71 DQLLSAYHVEDGHTLHMVVRQPVPSSSDGTHNLP-GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 71 dkTLSDYGIkdGSTIHLVlRlpg~psss~~~I~v-~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
...++||.|. +|.++.++..- .+.+.+ ..|+.+.+.|.+++||+.||.+|+ ++|+|+++|||+|+
T Consensus 7 ~~~~~~~~~~--~t~~l~l~~~m-----~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 7 HHPMSDYDIP--TTENLYFQGAM-----SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 73 (101)
T ss_dssp -----------------------------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET
T ss_pred cCCccccCCC--cceeecccCCc-----EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 3567888884 56666554221 122222 367888999999999999999999 89999999999975
No 124
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.13 E-value=0.14 Score=45.65 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=64.8
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC---CeecCCcchhcccCCCCCCEEEEeee
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR---GKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~---GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
-++.++++.|.....+...++|++..++.+|--.|++|..+.|++-.|.-. +..|+-+++|.||||++ |+.+-.
T Consensus 6 ~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~ 82 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDV 82 (91)
T ss_dssp CCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEEC
T ss_pred CCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheecc
Confidence 345789999999988999999999999999999999999999999988854 56899999999999986 555544
Q ss_pred c
Q 004252 91 Q 91 (765)
Q Consensus 91 l 91 (765)
.
T Consensus 83 ~ 83 (91)
T 2daj_A 83 N 83 (91)
T ss_dssp C
T ss_pred c
Confidence 3
No 125
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=93.91 E-value=0.0045 Score=50.57 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=34.7
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+++.+++||..||.+++ ..|+|++.|+|+|.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 8 NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 457778899999999999999999 99999999999986
No 126
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.78 E-value=0.16 Score=46.83 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=53.9
Q ss_pred CCcEEEEEEeCC--CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----CeecCCc----------
Q 004252 16 ETTIEIKIKTLD--SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GKVLKDD---------- 71 (765)
Q Consensus 16 ~stMqI~VKtLd--GKTftLeVspsdTV~dLKeKIeekt--GIP------PeqQRLIF~----GKvLkDd---------- 71 (765)
..+|.|+|-..+ +..+.+.|-..+||.++|+||-+.. |+| +++..|-+. |+.|.|.
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence 356778876543 4567888889999999999997642 332 356677763 4666542
Q ss_pred ---chhcccCCCCCCEEEEeee
Q 004252 72 ---QLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 72 ---kTLSDYGIkdGSTIHLVlR 90 (765)
.||..|+|.||++|-|+.+
T Consensus 89 krLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 89 KRVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CCCCBHHHHTCCTTCEEEEEEC
T ss_pred eEecchhhcCCCCCCEEEEEeC
Confidence 3689999999999998764
No 127
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.68 E-value=0.053 Score=57.19 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=71.7
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC----CCCCCeEEEe------CCeecCCcchhcccCCCCCCEEEE
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG----VLSEQQRLIC------RGKVLKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektG----IPPeqQRLIF------~GKvLkDdkTLSDYGIkdGSTIHL 87 (765)
.+.++|... +-+.++.+++++||.++..+|.++.. .++++--|.. +|+-|+++++|..|++++++.|+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 466777765 77788999999999999999988764 3567777776 456789999999999999999888
Q ss_pred eeecCCCCCCCCCCCCCCCCCCcccccccCccccc
Q 004252 88 VVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIET 122 (765)
Q Consensus 88 VlRlpg~psss~~~I~v~tGrtitleVspSdTIes 122 (765)
..+.... .+.-.+|....+.++.+.++..
T Consensus 82 ~~~~~~~------~V~l~dg~~~~~~vd~~tt~~e 110 (371)
T 3ivf_A 82 RKKQRPL------KIRMLDGTVKTIMVDDSKTVTD 110 (371)
T ss_dssp EECEEEE------EEECTTSCEEEEEEETTSBHHH
T ss_pred cCceeEE------EEECcCCCEEEEEECCCCCHHH
Confidence 7543221 1122455566667776655544
No 128
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=94.29 E-value=0.00084 Score=55.59 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=34.8
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+++.++|++++||..||.+|+ ++|+|+++|||+|+
T Consensus 12 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC
Confidence 457788899999999999999999 99999999999875
No 129
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=94.21 E-value=0.0082 Score=54.97 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
.+|+++.+.|++++||.+||.+|+ .+|+|+++|+|+|.
T Consensus 8 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (128)
T 3u5e_m 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (128)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC
Confidence 567888899999999999999999 99999999999985
No 130
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=94.20 E-value=0.0026 Score=56.31 Aligned_cols=36 Identities=6% Similarity=-0.006 Sum_probs=32.8
Q ss_pred CCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 GrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.+.+++.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 27 ~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 27 AVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp CEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred ceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 3467889999999999999999 99999999999985
No 131
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.15 E-value=0.16 Score=48.49 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=54.3
Q ss_pred CCCcEEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEe----CCee-cCCc----
Q 004252 15 SETTIEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLIC----RGKV-LKDD---- 71 (765)
Q Consensus 15 s~stMqI~VKtLd------GKTftLeVspsdTV~dLKeKIeekt--GIP------PeqQRLIF----~GKv-LkDd---- 71 (765)
...+|.|+|-..+ ...+.+.|-..+||.++|+||.+.. ++| +++.-|-+ .|+. |.|.
T Consensus 21 ey~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS 100 (138)
T 2r2o_A 21 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 100 (138)
T ss_dssp -CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred eeEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcc
Confidence 3467888876653 2468899999999999999997753 333 34455655 2443 5542
Q ss_pred ---------chhcccCCCCCCEEEEeeecC
Q 004252 72 ---------QLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 72 ---------kTLSDYGIkdGSTIHLVlRlp 92 (765)
.||+.|+|.+|.+|-|+.+..
T Consensus 101 ~~~~~wkrLNTL~HY~V~Dga~l~l~~~~~ 130 (138)
T 2r2o_A 101 EVQGLWRRLNTLQHYKVPDGATVALVPCLT 130 (138)
T ss_dssp CEETTEEECCBHHHHTCCTTCEEEEEEC--
T ss_pred cccCCceeecchhccCCCCCCEEEEEECCC
Confidence 279999999999999998754
No 132
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.07 E-value=0.0019 Score=57.97 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=33.6
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIF 141 (765)
..|+.+.+++.++++|+.||.+|+ ++|||+++|+|+|
T Consensus 16 ~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 16 YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc
Confidence 567888899999999999999999 9999999999853
No 133
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=93.97 E-value=0.0017 Score=54.38 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.7
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|.+++||..||.+|+ +.|+|++.|||+|.
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 457788899999999999999999 89999999999885
No 134
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=93.96 E-value=0.0054 Score=53.22 Aligned_cols=34 Identities=18% Similarity=0.064 Sum_probs=30.2
Q ss_pred CCcccccccCccccccccccc-CCCCCchhHHHHH
Q 004252 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (765)
Q Consensus 108 rtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIF 141 (765)
+.....+++++||+.||.+|+ ++|+|+++|||++
T Consensus 15 ~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~ 49 (86)
T 4b6w_A 15 RVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQL 49 (86)
T ss_dssp CEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEE
T ss_pred eEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 334567899999999999999 9999999999986
No 135
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=93.84 E-value=0.0017 Score=60.45 Aligned_cols=34 Identities=6% Similarity=-0.089 Sum_probs=31.9
Q ss_pred CcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 109 titleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.+++++++||..||.+|+ ++|+|+++|||||+
T Consensus 13 TI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~ 47 (118)
T 4ajy_B 13 TIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC
Confidence 57789999999999999999 99999999999986
No 136
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=93.83 E-value=0.0017 Score=60.29 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=32.0
Q ss_pred CcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 109 titleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.++|++++||..||.+|+ ++|||+++|||+|+
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKD 47 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 47889999999999999999 99999999999976
No 137
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=93.78 E-value=0.011 Score=56.48 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+++.++|.+++||.+||..|+ .+|+|+++|||+|+
T Consensus 8 l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (152)
T 3u5c_f 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp ---------------------------------------
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 567788899999999999999999 99999999999987
No 138
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=93.75 E-value=0.0012 Score=56.09 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=34.8
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|.+++||..||.+|+ ++|+|+++|||+|+
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 457788899999999999999999 99999999999986
No 139
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=93.71 E-value=0.0037 Score=55.64 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=32.1
Q ss_pred CCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 108 RSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 108 rtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
+.+.+.+.+++||+.||.+++ ++|||+++|||+|.
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 457789999999999999999 99999999999973
No 140
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=93.41 E-value=0.0024 Score=54.68 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=35.2
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|++++||++||.+|+ ++|+|+++|||+|+
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567888999999999999999999 99999999999975
No 141
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=93.40 E-value=0.0047 Score=53.96 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=35.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|.++++|+.||.+++ ++|+|+++|||+|+
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 456788899999999999999999 99999999999986
No 142
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.0038 Score=55.52 Aligned_cols=38 Identities=8% Similarity=-0.062 Sum_probs=35.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+.|.+++||.+||.+|+ +.|+|+++|||+|.
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 457788899999999999999999 99999999999986
No 143
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=93.05 E-value=0.0022 Score=54.95 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.8
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+++.+.|.+++||.+||.+|+ .+|+|+++|||+|+
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence 457788899999999999999999 99999999999985
No 144
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=93.04 E-value=0.003 Score=54.04 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=35.1
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+.|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 25 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 25 LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence 567888999999999999999999 89999999999975
No 145
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.88 E-value=0.55 Score=47.25 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=58.5
Q ss_pred EEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEe-C----CeecCC-cchhcccCCCCCCEEEEee
Q 004252 19 IEIKIKTLDSQ--TYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLIC-R----GKVLKD-DQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 19 MqI~VKtLdGK--TftLeVspsdTV~dLKeKIeektGIPPe-qQRLIF-~----GKvLkD-dkTLSDYGIkdGSTIHLVl 89 (765)
+.+++...... .+++.++..+||.+||+++++.++++++ +.||-. . -..|.| +++|.+++|.++..|.|=+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 45555544332 3557789999999999999999999997 688764 3 235665 5899999999999999988
Q ss_pred ecCCC
Q 004252 90 RQPVP 94 (765)
Q Consensus 90 Rlpg~ 94 (765)
+....
T Consensus 220 r~~dg 224 (231)
T 3jyu_A 220 QNEDG 224 (231)
T ss_dssp CCTTS
T ss_pred ecCCC
Confidence 86554
No 146
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=92.74 E-value=0.0028 Score=52.39 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=34.6
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|+++++|..||..++ ++|+|+++|||+|+
T Consensus 11 ~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 11 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence 456778899999999999999999 99999999999886
No 147
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.54 E-value=0.62 Score=46.41 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=57.8
Q ss_pred EEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEE--e-CC--eecCC-cchhcccCCCCCCEEEEee
Q 004252 19 IEIKIKTLDS--QTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLI--C-RG--KVLKD-DQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 19 MqI~VKtLdG--KTftLeVspsdTV~dLKeKIeektGIPPe-qQRLI--F-~G--KvLkD-dkTLSDYGIkdGSTIHLVl 89 (765)
+.|++..... ..+++.++..+||.+|++++.+.++++++ +.||- | .+ ..|+| +++|.+++|.++..|.|=+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 4455554432 23567889999999999999999999997 67875 3 33 35655 5799999999999999988
Q ss_pred ecCC
Q 004252 90 RQPV 93 (765)
Q Consensus 90 Rlpg 93 (765)
|...
T Consensus 208 r~~d 211 (217)
T 4a3p_A 208 KNED 211 (217)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8654
No 148
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=92.27 E-value=0.0054 Score=52.89 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=32.8
Q ss_pred CCCCCccc-ccccCccccccccccc-CCCCCchhHHHH
Q 004252 105 GTSRSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (765)
Q Consensus 105 ~tGrtitl-eVspSdTIesVKv~Iq-kEGIPpdqQRLI 140 (765)
..++.+.+ ++.+++||.+||.+|+ ++|+|+++|||+
T Consensus 14 ~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 14 WGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp ETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred ECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 35677788 9999999999999999 999999999998
No 149
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.11 E-value=0.004 Score=52.30 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=34.1
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..++.+.++|++++||..||.+|+ ..|+|+++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 15 PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence 346778899999999999999999 99999999999875
No 150
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=91.80 E-value=0.0046 Score=56.27 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 GrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
...+++.|.+++||..||.+|+ ++|||+++|||+|.
T Consensus 36 ~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g 72 (105)
T 4dbg_A 36 TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG 72 (105)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc
Confidence 3578899999999999999999 99999999998754
No 151
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=91.74 E-value=0.007 Score=53.93 Aligned_cols=38 Identities=8% Similarity=-0.045 Sum_probs=32.1
Q ss_pred CCCCCccc--ccccCcccccccccc-c-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGS--HVAPSVVIETFNLPD-R-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitl--eVspSdTIesVKv~I-q-kEGIPpdqQRLIFa 142 (765)
..|+.+++ +|.+++||+.||.+| + ++|+|+++|||||+
T Consensus 27 l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~ 68 (98)
T 4a20_A 27 IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK 68 (98)
T ss_dssp CSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET
T ss_pred CCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC
Confidence 45666666 556999999999999 7 88999999999986
No 152
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=91.58 E-value=0.0039 Score=51.32 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=33.3
Q ss_pred CCCCCc-ccc-cccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSH-GSH-VAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrti-tle-VspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+ .++ +.+++||+.||.+|+ ++|+|+++|||+|+
T Consensus 10 ~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 10 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346664 788 999999999999999 99999999999874
No 153
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=91.51 E-value=0.01 Score=49.09 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.9
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..++.+.+++.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 11 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 346678889999999999999999 89999999999975
No 154
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=91.39 E-value=0.98 Score=39.72 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=53.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-----ecCCcchhcc-c-CCCCCCEEEE
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-----VLKDDQLLSA-Y-HVEDGHTLHM 87 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GK-----vLkDdkTLSD-Y-GIkdGSTIHL 87 (765)
+...|+|+|..- -++.|+|.+..+..+|+++|.++.+++++..+|.|+.+ ++..+..|.+ + .++++ .|.|
T Consensus 2 ~~~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~-~LtL 78 (83)
T 1oey_A 2 SHMAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY-CLTL 78 (83)
T ss_dssp CSSCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT-EEEE
T ss_pred CCCcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCC-cEEE
Confidence 345588888875 78999999999999999999999999999999999753 3333333332 2 23444 4666
Q ss_pred eee
Q 004252 88 VVR 90 (765)
Q Consensus 88 VlR 90 (765)
.++
T Consensus 79 ~C~ 81 (83)
T 1oey_A 79 WCE 81 (83)
T ss_dssp EEC
T ss_pred EEe
Confidence 554
No 155
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=91.34 E-value=0.0089 Score=51.00 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=33.6
Q ss_pred CCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 106 tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
.|+.+.++|.+++||+.||.+|+ ++|+|+++|||+|.
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 46778899999999999999999 99999999999874
No 156
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=91.33 E-value=0.0041 Score=53.96 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=35.8
Q ss_pred CCCCCCCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 100 THNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 100 ~~I~v~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
+.+++-.|+.+.++|++++||+.||.+|+ ++|+|+++|||+|+
T Consensus 20 m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 20 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred EEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 33333236778899999999999999999 99999999999875
No 157
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.12 E-value=0.01 Score=54.66 Aligned_cols=38 Identities=5% Similarity=0.041 Sum_probs=33.5
Q ss_pred CCCCCcccccccCccccccccccc-------CCCC--CchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGV--PSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-------kEGI--PpdqQRLIFa 142 (765)
..|++++++|++++||.+||.+|+ +||+ |+++|||||+
T Consensus 24 l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~ 70 (116)
T 1wgh_A 24 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 70 (116)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET
T ss_pred CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC
Confidence 567889999999999999999998 4575 6999999998
No 158
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=91.11 E-value=0.0058 Score=52.27 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=35.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+++.+++||+.||.+|+ ..|+|++.|||+|.
T Consensus 17 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 17 LTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp TTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC
Confidence 667888899999999999999999 89999999999875
No 159
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.01 E-value=0.0057 Score=53.67 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=32.5
Q ss_pred CCCc-ccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSH-GSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 Grti-tleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.+ .+++.+++||.+||.+|+ ++|+|+++|||+|.
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~ 53 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVK 53 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 4667 589999999999999999 99999999999964
No 160
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.94 E-value=0.0081 Score=50.70 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=33.3
Q ss_pred CCC-CCccc-ccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTS-RSHGS-HVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tG-rtitl-eVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..| +.+.+ .|.+++||..||.+|+ ++|+|+++|||+|.
T Consensus 15 ~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 15 IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred CCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 345 57788 5999999999999999 99999999999875
No 161
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.85 E-value=0.01 Score=51.02 Aligned_cols=34 Identities=3% Similarity=-0.161 Sum_probs=29.4
Q ss_pred CcccccccCccccccccccc-CC--CCCchhHHHHHH
Q 004252 109 SHGSHVAPSVVIETFNLPDR-GD--GVPSEISQIVSA 142 (765)
Q Consensus 109 titleVspSdTIesVKv~Iq-kE--GIPpdqQRLIFa 142 (765)
.+.+.+.+++||.+||.+|+ ++ |+|+++|||+|+
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 45566779999999999999 66 999999999986
No 162
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=90.76 E-value=0.0071 Score=52.71 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=34.8
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 567788899999999999999999 99999999999975
No 163
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=90.62 E-value=0.0089 Score=49.55 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=34.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..++.+.+++.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 346678889999999999999999 89999999999985
No 164
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.59 E-value=0.012 Score=51.76 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=33.1
Q ss_pred CCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 GrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.+.++|.+++||++||.+|+ ++|+|+++|||+|.
T Consensus 21 ~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 4677899999999999999999 99999999999875
No 165
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=90.57 E-value=0.016 Score=54.34 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=33.2
Q ss_pred CCCCCc-ccccccCcccccccccc-----c-CCCCCc--hhHHHHHH
Q 004252 105 GTSRSH-GSHVAPSVVIETFNLPD-----R-GDGVPS--EISQIVSA 142 (765)
Q Consensus 105 ~tGrti-tleVspSdTIesVKv~I-----q-kEGIPp--dqQRLIFa 142 (765)
.+|+.+ .+.+++++||.+||.+| + +||+|+ ++|||||+
T Consensus 24 ~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~ 70 (126)
T 1se9_A 24 TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA 70 (126)
T ss_dssp TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET
T ss_pred CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC
Confidence 456666 68999999999999999 6 899996 89999987
No 166
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=90.51 E-value=0.013 Score=54.46 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=33.7
Q ss_pred CCCCCcccccccCccccccccccc-------CCCCC--chhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-------GDGVP--SEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-------kEGIP--pdqQRLIFa 142 (765)
.+|++++++|.+++||++||.+|+ +||+| +++|||||+
T Consensus 25 l~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~ 71 (125)
T 2gow_A 25 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ 71 (125)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS
T ss_pred CCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC
Confidence 557889999999999999999987 47884 999999987
No 167
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=90.23 E-value=0.0075 Score=51.59 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.4
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+.|.+++||..||.+|+ ..|+|++.|||+|.
T Consensus 9 ~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC
Confidence 456778899999999999999999 89999999999986
No 168
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.22 E-value=0.0093 Score=52.86 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=34.5
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+.|.+++||+.||.+|+ +.|+|+++|||+|.
T Consensus 31 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 31 STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC
Confidence 356778899999999999999999 99999999999985
No 169
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=90.17 E-value=1.1 Score=42.24 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=51.6
Q ss_pred cEEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----Cee-cCC---------c--
Q 004252 18 TIEIKIKT--LDSQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GKV-LKD---------D-- 71 (765)
Q Consensus 18 tMqI~VKt--LdGKTftLeVspsdTV~dLKeKIeekt--GIP------PeqQRLIF~----GKv-LkD---------d-- 71 (765)
++.|++-. .++..+.+.|-..+||.++|+||-+.. ++| +++..|-+. |+. |.| +
T Consensus 4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k 83 (127)
T 3h6n_A 4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK 83 (127)
T ss_dssp EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence 45555433 234567888889999999999997642 333 366777762 333 554 1
Q ss_pred --chhcccCCCCCCEEEEeeec
Q 004252 72 --QLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 72 --kTLSDYGIkdGSTIHLVlRl 91 (765)
.||..|+|.||.+|-|+.+.
T Consensus 84 rLNTL~HY~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 84 KLNTLAHYKIPEGASLAMSLID 105 (127)
T ss_dssp CCCBTTTTTCCTTCEEEEEECC
T ss_pred EeccccccCCCCCCEEEEEEcc
Confidence 36899999999999998764
No 170
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.00 E-value=0.011 Score=48.63 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=33.6
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+++.+++||+.||.+|+ ..|+|++.|||+|.
T Consensus 15 ~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 15 LQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 345677889999999999999999 89999999999874
No 171
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=89.99 E-value=0.0095 Score=51.99 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=31.6
Q ss_pred CcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 109 titleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.++|.+++||+.||.+|+ ++|+|+++|||+|.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 67789999999999999999 99999999999874
No 172
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.90 E-value=0.0088 Score=51.83 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=33.7
Q ss_pred CCCCCcccccccCccccccccccc-C---CCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-k---EGIPpdqQRLIFa 142 (765)
..|+.+.++|.+++||+.||.+|+ . +|+|+++|||+|+
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~ 49 (95)
T 1uel_A 8 LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA 49 (95)
T ss_dssp TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC
Confidence 346778899999999999999998 5 8999999999975
No 173
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=89.35 E-value=0.94 Score=42.18 Aligned_cols=76 Identities=25% Similarity=0.398 Sum_probs=52.8
Q ss_pred CCcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEe-CC---e-ecCC---------
Q 004252 16 ETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLIC-RG---K-VLKD--------- 70 (765)
Q Consensus 16 ~stMqI~VKtLd---GKTftLeVspsdTV~dLKeKIeekt--GIP------PeqQRLIF-~G---K-vLkD--------- 70 (765)
..+|.|+|-..+ ...+.+.|-..+||.++|+||.+.. ++| +++..|-+ .| + .|.|
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence 356777775543 3457788889999999999997642 333 34566766 23 3 3443
Q ss_pred c----chhcccCCCCCCEEEEeeec
Q 004252 71 D----QLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 71 d----kTLSDYGIkdGSTIHLVlRl 91 (765)
+ .||+.|+|.+|++|-|+.|.
T Consensus 91 ~wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp -CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred cceEeccccccCCCCCCEEEEEeCC
Confidence 1 36899999999999998775
No 174
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.34 E-value=0.018 Score=50.09 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=31.3
Q ss_pred CcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 109 titleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
.+.+++.+++||+.||.+|+ ++|+|+++|||+|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 46788999999999999999 99999999999974
No 175
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=89.29 E-value=0.02 Score=51.01 Aligned_cols=34 Identities=6% Similarity=-0.047 Sum_probs=29.2
Q ss_pred CcccccccCccccccccccc--CCCCCc-hhHHHHHH
Q 004252 109 SHGSHVAPSVVIETFNLPDR--GDGVPS-EISQIVSA 142 (765)
Q Consensus 109 titleVspSdTIesVKv~Iq--kEGIPp-dqQRLIFa 142 (765)
.++++|.+++||..||.+|+ .+|+|+ ++|||||+
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~ 73 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS 73 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC
Confidence 45788899999999999999 467775 99999986
No 176
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=89.11 E-value=0.0094 Score=48.04 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=33.9
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+++.+++||..||.+++ ..|+|++.|||+|.
T Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 346778889999999999999999 89999999999875
No 177
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=89.01 E-value=0.011 Score=57.03 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=35.2
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|.+++||.+||.+|+ ++|+|+++|||+|+
T Consensus 8 ~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 457888899999999999999999 99999999999986
No 178
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=88.98 E-value=0.016 Score=48.28 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=33.6
Q ss_pred CCCCCcccccccCccccccccccc-C---CCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-G---DGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-k---EGIPpdqQRLIFa 142 (765)
..|+.+.++|.+++||..||.+|+ . +|+|+++|||+|.
T Consensus 13 ~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 13 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 346778899999999999999998 4 8999999999875
No 179
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=88.82 E-value=2.7 Score=36.60 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=50.1
Q ss_pred CcEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-C----------CCCCeEEEeCCeecCCcchhcccC
Q 004252 17 TTIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-V----------LSEQQRLICRGKVLKDDQLLSAYH 78 (765)
Q Consensus 17 stMqI~VKtLd------G-KTftLeVspsdTV~dLKeKIeektG-I----------PPeqQRLIF~GKvLkDdkTLSDYG 78 (765)
..|+|+||... | +...+++....||.+|++.+..++. + ......+..+|+.... ++-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 46999999874 3 4677888778999999999987642 1 1234556678887753 677
Q ss_pred CCCCCEEEEeee
Q 004252 79 VEDGHTLHMVVR 90 (765)
Q Consensus 79 IkdGSTIHLVlR 90 (765)
+++|+.|.++..
T Consensus 83 L~dGDeV~i~pp 94 (98)
T 1vjk_A 83 LKDGDVVGVFPP 94 (98)
T ss_dssp CCTTCEEEEESC
T ss_pred CCCCCEEEEECC
Confidence 899999988743
No 180
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=88.70 E-value=3.6 Score=33.96 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=48.5
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
.|+|+|.-. .....+++....||.+|.+++ +++++...+..+|+.+..+. -+++||.|.++.-.
T Consensus 4 ~m~i~vNg~-~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 4 GMKFTVITD-DGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVI 67 (70)
T ss_dssp CEEEEEEET-TEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECT
T ss_pred eEEEEEeCc-cCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecc
Confidence 488888763 334567787789999999876 56777777889999987554 68899999987543
No 181
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=88.70 E-value=0.0081 Score=53.66 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.7
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+.|.+++||..||.+|+ +.|+|++.|||+|.
T Consensus 43 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC
Confidence 346677889999999999999999 89999999999875
No 182
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=88.36 E-value=1 Score=38.15 Aligned_cols=62 Identities=11% Similarity=0.251 Sum_probs=47.6
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
|+|+||....+...+++....||.+|-+ +.+++++.--+..+|+.+..+. +.+||+|.++.-
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~ 62 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRL 62 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEe
Confidence 7888888755556689999999998765 5789998887778999886555 335888888643
No 183
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=88.34 E-value=0.017 Score=50.33 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 106 tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
.++.+.+++.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~ 62 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK 62 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSS
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 35667889999999999999999 99999999999963
No 184
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=88.32 E-value=0.02 Score=51.35 Aligned_cols=57 Identities=7% Similarity=0.082 Sum_probs=43.6
Q ss_pred CEEEEeeecCCCCCCCCCCCCCCCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 83 HTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 83 STIHLVlRlpg~psss~~~I~v~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|.|.++.+...... ..-..|+.+.+.|.+++||..||.+|+ .+|+|+++|||+|.
T Consensus 24 ~~i~l~V~~p~~~~~~---~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKT---EWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp SCEEEEEEECCCSSSC---SSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET
T ss_pred CCEEEEEEcCCCcccc---ccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC
Confidence 4677777765421100 111578889999999999999999999 99999999999985
No 185
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=88.10 E-value=0.015 Score=57.65 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=35.4
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+++.++|++++||.+||.+|+ ++|+|+++|||+|+
T Consensus 113 l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~ 151 (189)
T 3q3f_A 113 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 151 (189)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC
Confidence 567889999999999999999999 89999999999976
No 186
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.66 E-value=0.024 Score=48.78 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=33.0
Q ss_pred CCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 GrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.+.++|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 5677889999999999999999 99999999999875
No 187
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=87.61 E-value=3 Score=39.40 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=50.5
Q ss_pred CCcEEEEEEe---CC------CcEEEEEecCCCCHHHHHHHHHHH----hCCCC----CCeEEEeC-C---eecC-----
Q 004252 16 ETTIEIKIKT---LD------SQTYTLRVDKQVPVPALKEQIASV----TGVLS----EQQRLICR-G---KVLK----- 69 (765)
Q Consensus 16 ~stMqI~VKt---Ld------GKTftLeVspsdTV~dLKeKIeek----tGIPP----eqQRLIF~-G---KvLk----- 69 (765)
-.++.|+|-. .. ...+.+.|-..+||.++|+||-+. .++|- ++..|-+. | +.|.
T Consensus 17 y~tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~t 96 (126)
T 3kuz_A 17 QGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSS 96 (126)
T ss_dssp CCEEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTT
T ss_pred eEEEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCc
Confidence 4567888776 33 246888998999999999999543 36554 34555542 2 2332
Q ss_pred -----Cc----chhcccCCCCCCEEEEee
Q 004252 70 -----DD----QLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 70 -----Dd----kTLSDYGIkdGSTIHLVl 89 (765)
++ .||+.|+|.||++|-|+.
T Consensus 97 S~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 97 SVILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CCBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred ceEecCCeeEeccccccCCCCCCEEEEee
Confidence 21 367889999999998875
No 188
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=87.32 E-value=0.032 Score=49.69 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=40.3
Q ss_pred CCEEEEeeecCCCCCCCCCCCCCCCCCCccccccc-Cccccccccccc-CCCCCchhHHHHHH
Q 004252 82 GHTLHMVVRQPVPSSSDGTHNLPGTSRSHGSHVAP-SVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 82 GSTIHLVlRlpg~psss~~~I~v~tGrtitleVsp-SdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
...|.+.++.+.. ..|+.+.++|.+ ++||..||.+|+ .+|+|+++|||+|.
T Consensus 25 ~~~i~i~Vk~~~~----------~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 25 PGPATIRVSKPNE----------NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp CSCEEEEECCTTC----------SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred CCcEEEEEEeccc----------CCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 3456666664311 146778899998 999999999999 99999999999974
No 189
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=87.12 E-value=0.022 Score=49.30 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=33.9
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+.|++++||..||.+|+ ..|+|++.|||+|.
T Consensus 8 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 346677889999999999999999 99999999999985
No 190
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=87.10 E-value=0.037 Score=48.75 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=32.3
Q ss_pred CCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 GrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
|+.+.++|.+++||.+||.+|+ ..|+|++.|||+|.
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA 70 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 4457789999999999999999 89999999999875
No 191
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=86.95 E-value=0.018 Score=49.11 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=33.6
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+++.+++||++||.+|+ .+|+|+++|||+|.
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 345677889999999999999999 99999999999864
No 192
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=86.62 E-value=0.025 Score=51.04 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=34.9
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|.+++||..||.+|+ ..|+|+++|||+|+
T Consensus 17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 567888899999999999999999 99999999999875
No 193
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=86.54 E-value=0.024 Score=50.76 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=34.4
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.+.|.+++||..||.+|+ +.|+|+++|||+|.
T Consensus 43 ~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 43 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence 456778899999999999999999 89999999999975
No 194
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=86.40 E-value=0.02 Score=46.51 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=32.4
Q ss_pred CCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 GrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
|+.+.+++.+++||+.||.+++ ..|+|++.|||+|.
T Consensus 13 g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 4567789999999999999999 89999999999875
No 195
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.25 E-value=0.048 Score=47.30 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=31.1
Q ss_pred CCCCCc--cc-ccccCccccccccccc--CCCCCchhHHHHHH
Q 004252 105 GTSRSH--GS-HVAPSVVIETFNLPDR--GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrti--tl-eVspSdTIesVKv~Iq--kEGIPpdqQRLIFa 142 (765)
..|+.+ .+ +|.+++||.+||.+|+ ++|+|+++|||+|.
T Consensus 18 ~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~ 60 (88)
T 2dzj_A 18 AKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD 60 (88)
T ss_dssp SSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS
T ss_pred CCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec
Confidence 334443 36 8999999999999998 48999999999864
No 196
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.01 E-value=0.03 Score=47.91 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.1
Q ss_pred CCCcccccccC-----ccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSHGSHVAPS-----VVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 GrtitleVspS-----dTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.+.+++.++ .||..||.+|+ ..|+|+++|||+|.
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 45567788885 99999999999 99999999999864
No 197
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=85.75 E-value=0.019 Score=46.16 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 106 tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
.|+.+.+++.+++||..+|..++ ..|+|++.|||+|.
T Consensus 9 ~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 46677889999999999999999 89999999999874
No 198
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.14 E-value=0.014 Score=52.79 Aligned_cols=33 Identities=6% Similarity=-0.112 Sum_probs=29.5
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEIS 137 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQ 137 (765)
.+|+.+.++|.+++||++||.+|+ ++|+|++.|
T Consensus 15 l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q 48 (105)
T 1v2y_A 15 MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQERE 48 (105)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccc
Confidence 678899999999999999999999 899988544
No 199
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.10 E-value=0.078 Score=46.73 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.6
Q ss_pred cccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 110 itleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
+.++|.+++||..||.+|+ ..|+|+++|||+|.
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5789999999999999999 89999999999886
No 200
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=82.95 E-value=3.5 Score=34.10 Aligned_cols=68 Identities=7% Similarity=0.205 Sum_probs=45.1
Q ss_pred EEEEEEeCCC-cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 19 IEIKIKTLDS-QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 19 MqI~VKtLdG-KTftLeVspsdTV~dLKeKIeektGIPP--eqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
|+|+||.... +.-.+++ ...||.+|++++..+.++.. +.-.+..+|+.+.+ .++-+++|+.|.++...
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV 71 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence 5677777642 1133666 56899999999986543322 34556667777543 35678999999988543
No 201
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=82.78 E-value=0.034 Score=48.99 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=30.7
Q ss_pred cccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 110 HGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 110 itleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
+.++|.+++||+.||.+|+ ..|+|+++|||+|.
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 5789999999999999999 89999999999875
No 202
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=81.91 E-value=3.5 Score=47.66 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=53.2
Q ss_pred CCCcEEEEEEeCCC------cEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEeC----Ce-ecCCc----
Q 004252 15 SETTIEIKIKTLDS------QTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLICR----GK-VLKDD---- 71 (765)
Q Consensus 15 s~stMqI~VKtLdG------KTftLeVspsdTV~dLKeKIeekt--GIP------PeqQRLIF~----GK-vLkDd---- 71 (765)
.-.+|.|+|-..+| ..+.+.|-..+||.++|+||-+.. |+| +++..|-+. |+ .|.|.
T Consensus 254 e~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts 333 (644)
T 3hm6_X 254 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 333 (644)
T ss_dssp CCCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred cceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccc
Confidence 34567888765432 457788989999999999997642 333 355566652 33 35542
Q ss_pred ---------chhcccCCCCCCEEEEeeecCC
Q 004252 72 ---------QLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 72 ---------kTLSDYGIkdGSTIHLVlRlpg 93 (765)
.||+.|+|.||++|-|+.+...
T Consensus 334 ~~~~~wkrLNTL~HY~V~dga~v~L~p~~~~ 364 (644)
T 3hm6_X 334 EVQGLWRRLNTLQHYKVPDGATVALVPCLTK 364 (644)
T ss_dssp CEETTEEECCBTTTTTCCTTCEEEEEEC---
T ss_pred eecCcceeecchhhcCCCCCcEEEEEecccc
Confidence 3799999999999999877543
No 203
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=81.89 E-value=0.051 Score=49.54 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=31.0
Q ss_pred CcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 109 SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 109 titleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
.+...+.+++||+.||.+|+ ++|||+++|||+|.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 46678999999999999999 99999999999973
No 204
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=81.45 E-value=5.9 Score=35.11 Aligned_cols=51 Identities=8% Similarity=0.106 Sum_probs=42.3
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeCCe
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICRGK 66 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeq-QRLIF~GK 66 (765)
+...|+||+.. +|..+.+.|+++.+..+|+++|.+.+++..++ ..|-|...
T Consensus 3 ~~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 3 LGSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CSSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 44568899875 68899999999999999999999999987655 67777653
No 205
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=81.15 E-value=11 Score=31.76 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=42.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-C-----C-----CCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 29 QTYTLRVDKQVPVPALKEQIASVTG-V-----L-----SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 29 KTftLeVspsdTV~dLKeKIeektG-I-----P-----PeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
+...+++....||.+|++.+..++. + . ....++..+|+.... ++-+++|+.|.++-..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv 86 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPV 86 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCC
Confidence 6677888778899999999987653 1 0 012466678887764 5678999999988543
No 206
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=80.89 E-value=0.052 Score=49.91 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=33.0
Q ss_pred CCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 GrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
++.+.++|++++||.+||.+|+ +.|+|+++|||+|.
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 5667889999999999999999 89999999999986
No 207
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=80.87 E-value=9.5 Score=34.78 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=50.0
Q ss_pred CcEEEEEEeCC------C--cEEEEEecC---CCCHHHHHHHHHHHhCCCCCCeEEEeC-Ce------ecCCcc---hh-
Q 004252 17 TTIEIKIKTLD------S--QTYTLRVDK---QVPVPALKEQIASVTGVLSEQQRLICR-GK------VLKDDQ---LL- 74 (765)
Q Consensus 17 stMqI~VKtLd------G--KTftLeVsp---sdTV~dLKeKIeektGIPPeqQRLIF~-GK------vLkDdk---TL- 74 (765)
.+|+|+|+... | +.+.+++.. ..||.+|.+.+.+++ +..+.+|+.. |+ +|-++. .|
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 45999999874 2 467788873 369999999998875 2233344322 32 222222 33
Q ss_pred -cccCCCCCCEEEEeeecCCC
Q 004252 75 -SAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 75 -SDYGIkdGSTIHLVlRlpg~ 94 (765)
.+|.+++|+.|.++-...+.
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 36889999999998776664
No 208
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=80.47 E-value=0.076 Score=47.29 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=28.9
Q ss_pred ccccc-cCccccccccccc-CCCCCchhHHHHHH
Q 004252 111 GSHVA-PSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 111 tleVs-pSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
.++|. +++||.+||.+|+ +.|+|+++|||++.
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~ 53 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTN 53 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSS
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEEC
Confidence 57888 9999999999999 99999999999653
No 209
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=80.35 E-value=4 Score=35.82 Aligned_cols=67 Identities=6% Similarity=0.049 Sum_probs=44.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCC-CCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQ-VPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVsps-dTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
....|+|+| +|+.+ ++... .||.+|.+++ +++++...+..+|+.+..+ ...++.|++||.|-++--.
T Consensus 17 ~~~~M~I~v---NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 17 IGGRHMLQL---NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp -----CEEE---TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEEC
T ss_pred CCcceEEEE---CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEccc
Confidence 445676665 56654 45565 8999998876 5677777788899987543 3445679999999988643
No 210
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=79.85 E-value=0.054 Score=48.58 Aligned_cols=38 Identities=8% Similarity=-0.028 Sum_probs=33.8
Q ss_pred CCCCcccccccCccccccccccc-CCCCCchhHHHHHHH
Q 004252 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAV 143 (765)
Q Consensus 106 tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFav 143 (765)
....+.+.+.+.++|..||..++ ++|||+++|+|+|..
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 44567789999999999999999 999999999999764
No 211
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=79.41 E-value=10 Score=34.30 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=58.7
Q ss_pred CCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe-------CCeecCCcchh----cccCCCCC
Q 004252 14 SSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC-------RGKVLKDDQLL----SAYHVEDG 82 (765)
Q Consensus 14 ~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF-------~GKvLkDdkTL----SDYGIkdG 82 (765)
.+...+-|+|-..||....|.|++.+|+.++-+++..|.++..+.-.=+| --|.|+|...| +.+.+...
T Consensus 5 ~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~ 84 (100)
T 1wgr_A 5 SSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGD 84 (100)
T ss_dssp CCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSC
T ss_pred ccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCC
Confidence 34456788888899999999999999999999999999987655443222 23678887654 45566667
Q ss_pred CEEEEeeecC
Q 004252 83 HTLHMVVRQP 92 (765)
Q Consensus 83 STIHLVlRlp 92 (765)
..|.+..|..
T Consensus 85 nr~~F~kr~~ 94 (100)
T 1wgr_A 85 SRFVFRKNFA 94 (100)
T ss_dssp CEEEECSCCS
T ss_pred cEEEEecchh
Confidence 7777765543
No 212
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=79.25 E-value=6.5 Score=39.71 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=52.3
Q ss_pred cEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe---CCe--ecCCcchhcccCCCCCCEEEEeee
Q 004252 18 TIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC---RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 18 tMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeq-QRLIF---~GK--vLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
+|.|+|..+|| ++.+.|++..|+.+|-++|+++.|+...+ .-|.| +|. .|+.++.+.+.+++.+..+.|..|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 47889999998 67899999999999999999999987644 24554 232 467777777766554444444443
No 213
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=78.49 E-value=0.1 Score=55.23 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=35.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|.+++||..||.+|+ ++|+|+++|||+|.
T Consensus 241 l~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~ 279 (307)
T 3ai5_A 241 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279 (307)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC
Confidence 567888899999999999999999 99999999999975
No 214
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=77.87 E-value=5 Score=35.80 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=54.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecC
Q 004252 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 31 ftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlp 92 (765)
+.-.++-..++..||+.++.+.++.-+.-.+...+..|+++++|.|-+|+-...+.+.+...
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 34467778899999999999999999999999999889999999999999888888877643
No 215
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=77.25 E-value=6.6 Score=40.17 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=55.3
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEe--CCe--ecCCcchhcccCCCCCCEEEEeee
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLIC--RGK--VLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeq-QRLIF--~GK--vLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
...+.++|..+|| ++.+.|++..|+.+|-++|+++.|+...+ .-|.| +|. -|+.++.|.+..++.+..+.|..|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4678999999999 78899999999999999999999987533 24555 343 377788888876655554444444
No 216
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=75.72 E-value=9.7 Score=33.81 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=36.1
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF 63 (765)
..|+|+|-. ++..|.|.|..+.+..+||+||..+..+ +...|++
T Consensus 11 ~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ 54 (85)
T 1ip9_A 11 KTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQT 54 (85)
T ss_dssp CCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEE
T ss_pred CceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEE
Confidence 568888865 5679999999999999999999999888 4555443
No 217
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=75.54 E-value=0.13 Score=44.22 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=30.0
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
..|+.+.++|.++++|+.||.+|+ .+ +++|||+|.
T Consensus 15 ~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~ 50 (95)
T 1wia_A 15 LNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQ 50 (95)
T ss_dssp TTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEET
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEEC
Confidence 346678899999999999999999 54 899999975
No 218
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=75.09 E-value=9 Score=44.24 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=54.2
Q ss_pred CCCcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHHHh--CCC------CCCeEEEe----CCe-ecCCc-------
Q 004252 15 SETTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIASVT--GVL------SEQQRLIC----RGK-VLKDD------- 71 (765)
Q Consensus 15 s~stMqI~VKtLd---GKTftLeVspsdTV~dLKeKIeekt--GIP------PeqQRLIF----~GK-vLkDd------- 71 (765)
.-.+|+|+|-..+ ...+.+.|-..+||.++|+||-+.. ++| +++..|-+ .|+ .|.|.
T Consensus 230 e~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 309 (627)
T 3ig3_A 230 DYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIE 309 (627)
T ss_dssp CCCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEE
T ss_pred cceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCcccccc
Confidence 3457788876554 3568889989999999999997652 332 35566665 233 34431
Q ss_pred ------chhcccCCCCCCEEEEeeecC
Q 004252 72 ------QLLSAYHVEDGHTLHMVVRQP 92 (765)
Q Consensus 72 ------kTLSDYGIkdGSTIHLVlRlp 92 (765)
.||.+|+|.||.+|-|+.+..
T Consensus 310 ~~wkrLNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 310 CDWKRVNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp TTEEECCBTTTTTCCTTCEEEEEEC--
T ss_pred CceeEecchhhcCCCCCceEEEEeccc
Confidence 368999999999999988763
No 219
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.80 E-value=0.14 Score=45.44 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=25.7
Q ss_pred cccC-ccccccccccc-CC--CCCchh-HHHHHH
Q 004252 114 VAPS-VVIETFNLPDR-GD--GVPSEI-SQIVSA 142 (765)
Q Consensus 114 VspS-dTIesVKv~Iq-kE--GIPpdq-QRLIFa 142 (765)
|+++ +||..||.+|+ ++ |+|+++ |||+|.
T Consensus 40 v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 40 YSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp SCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred cCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 5565 99999999999 77 999999 999975
No 220
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=73.48 E-value=0.17 Score=54.59 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=34.0
Q ss_pred CCCCCcccccccCccccccccccc----CCCCCchhHHHHHH
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR----GDGVPSEISQIVSA 142 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq----kEGIPpdqQRLIFa 142 (765)
..|+.+.++|.+++||..||.+|+ ++|||+++|||||.
T Consensus 15 l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~ 56 (368)
T 1oqy_A 15 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 56 (368)
T ss_dssp TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS
T ss_pred CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC
Confidence 457788899999999999999997 37899999999987
No 221
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=73.21 E-value=0.22 Score=52.66 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=32.5
Q ss_pred CCCCcccccccCccccccccccc-CCCCCchhHHHH
Q 004252 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIV 140 (765)
Q Consensus 106 tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLI 140 (765)
.|+.+.+.+.+++||..||.+|+ ++|||+++|+|+
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi 48 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLL 48 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEET
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEe
Confidence 46678899999999999999999 999999999999
No 222
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=72.84 E-value=13 Score=39.16 Aligned_cols=74 Identities=23% Similarity=0.278 Sum_probs=52.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC-CeEEEeCC---------eecCCcchhcccCCCCCCEEE
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE-QQRLICRG---------KVLKDDQLLSAYHVEDGHTLH 86 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPe-qQRLIF~G---------KvLkDdkTLSDYGIkdGSTIH 86 (765)
..+.++|..+||....+.|+...|+.+|-++|+++.|+... ..-|.+.. +-|+.++++.+.++....+++
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 45788899999999999999999999999999999997653 33455532 234445556555554445555
Q ss_pred Eeee
Q 004252 87 MVVR 90 (765)
Q Consensus 87 LVlR 90 (765)
+.+|
T Consensus 164 frvK 167 (371)
T 3ivf_A 164 LRRK 167 (371)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5443
No 223
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=72.59 E-value=12 Score=31.98 Aligned_cols=72 Identities=6% Similarity=0.041 Sum_probs=45.0
Q ss_pred EEEEEEeCC------CcEEEEEecCCCCHHHHHHHHHHHhCC------C-------CCCeEEEeCCeecCCcchhcccCC
Q 004252 19 IEIKIKTLD------SQTYTLRVDKQVPVPALKEQIASVTGV------L-------SEQQRLICRGKVLKDDQLLSAYHV 79 (765)
Q Consensus 19 MqI~VKtLd------GKTftLeVspsdTV~dLKeKIeektGI------P-------PeqQRLIF~GKvLkDdkTLSDYGI 79 (765)
|+|+|+... |+...+++ ...||.+|++.+.+++.- . ....++..+|+...+..- .++-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 567777652 33334665 457999999999887530 1 013456667776653222 25678
Q ss_pred CCCCEEEEeeecC
Q 004252 80 EDGHTLHMVVRQP 92 (765)
Q Consensus 80 kdGSTIHLVlRlp 92 (765)
++|+.|.++-...
T Consensus 79 ~~gDeV~i~Ppv~ 91 (93)
T 3dwg_C 79 ADGDSVTILPAVA 91 (93)
T ss_dssp CTTCEEEEEECCT
T ss_pred CCCCEEEEECCCC
Confidence 9999999886543
No 224
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=72.01 E-value=8.1 Score=39.67 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=53.7
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC---C--eecCCcchhcccCCCCCCEE
Q 004252 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR---G--KVLKDDQLLSAYHVEDGHTL 85 (765)
Q Consensus 12 ae~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeq-QRLIF~---G--KvLkDdkTLSDYGIkdGSTI 85 (765)
.+.....|.++|..+||....+.|++..|+.+|-++|.++.|+...+ .-|.|. | ..|+.++.+.+.......++
T Consensus 11 ~~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l 90 (296)
T 3qij_A 11 RENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNF 90 (296)
T ss_dssp ------CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEE
T ss_pred CCCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEE
Confidence 34556789999999999999999999999999999999999987544 345553 2 34677777777643333445
Q ss_pred EEeee
Q 004252 86 HMVVR 90 (765)
Q Consensus 86 HLVlR 90 (765)
++.++
T Consensus 91 ~frvk 95 (296)
T 3qij_A 91 TFNVK 95 (296)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 54443
No 225
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=71.56 E-value=2.7 Score=39.28 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe
Q 004252 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC 63 (765)
Q Consensus 31 ftLeVspsdTV~dLKeKIeektGIPPeqQRLIF 63 (765)
..+.|.+++|+.+||+.|++.+|+|+++|||-+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467899999999999999999999999999864
No 226
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=70.27 E-value=14 Score=33.78 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=55.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE---eCCe--ecCCcchhcccCCCCCCEEEEee
Q 004252 15 SETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLI---CRGK--VLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 15 s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLI---F~GK--vLkDdkTLSDYGIkdGSTIHLVl 89 (765)
+.+.+...|-..|...+++.+....|+.+|+..+++|.+...+.+.|+ +.|. +|++++.--.-.+.-...|++..
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~ 85 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYR 85 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEE
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 344566777777888889999999999999999999999877788876 4663 45655443333445556777766
Q ss_pred ec
Q 004252 90 RQ 91 (765)
Q Consensus 90 Rl 91 (765)
|.
T Consensus 86 kd 87 (104)
T 1wgy_A 86 KD 87 (104)
T ss_dssp CC
T ss_pred hH
Confidence 63
No 227
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=70.18 E-value=24 Score=32.32 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=56.2
Q ss_pred cEEEEEEeCCC---cEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCC---eecCCcchhcccCCCCCCEEEEee
Q 004252 18 TIEIKIKTLDS---QTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRG---KVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 18 tMqI~VKtLdG---KTftLeVspsdTV~dLKeKIeektGIPP--eqQRLIF~G---KvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
.++|+|..++. ..++++|..+.-|..|.-||-++..++. .+--|-.-- ..|+-..+|..|||+.+..+++..
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 46777777554 6688999999999999999998877654 344444432 257888999999999999999875
Q ss_pred e
Q 004252 90 R 90 (765)
Q Consensus 90 R 90 (765)
.
T Consensus 99 ~ 99 (102)
T 2kmc_A 99 Q 99 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 228
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=70.11 E-value=26 Score=30.44 Aligned_cols=71 Identities=23% Similarity=0.336 Sum_probs=43.4
Q ss_pred EEEEEEeCC--------CcEEEEEec--CCCCHHHHHHHHHHHhCCCCCCeEE---EeCCe------ecCCcc---hh--
Q 004252 19 IEIKIKTLD--------SQTYTLRVD--KQVPVPALKEQIASVTGVLSEQQRL---ICRGK------VLKDDQ---LL-- 74 (765)
Q Consensus 19 MqI~VKtLd--------GKTftLeVs--psdTV~dLKeKIeektGIPPeqQRL---IF~GK------vLkDdk---TL-- 74 (765)
|+|+||... .+...+++. ...||.+|++.+.++..-. ..++ .-+|+ ++-|+. .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~--~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~ 79 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINN--PNDVSIFIEDDSIRPGIITLINDTDWELEGE 79 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSS--GGGHHHHEETTEECTTEEEEETTEEGGGGTG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchh--hHHHhhhccCCccccCeEEEECCEEccccCC
Confidence 788888752 245667776 5789999999998876311 1111 11221 222222 22
Q ss_pred cccCCCCCCEEEEeeec
Q 004252 75 SAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 75 SDYGIkdGSTIHLVlRl 91 (765)
.++-+++|+.|.++-..
T Consensus 80 ~d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 80 KDYILEDGDIISFTSTL 96 (99)
T ss_dssp GGCBCCTTCEEEEEECT
T ss_pred CCcCcCCCCEEEEECCC
Confidence 36779999999887543
No 229
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=70.06 E-value=13 Score=30.60 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=38.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhC-----CCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 29 QTYTLRVDKQVPVPALKEQIASVTG-----VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 29 KTftLeVspsdTV~dLKeKIeektG-----IPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
+...++ ....||.+|++.+..+.. +......+..+|+.... ++-+++|+.|.++..
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPP 77 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCC
Confidence 345555 567799999999875531 22334567788887753 567899999998753
No 230
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=69.86 E-value=11 Score=42.77 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=55.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCC-eEEEeC---C--eecCCcchhcccCCCCCCEEEEeee
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQ-QRLICR---G--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeq-QRLIF~---G--KvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
..|.|.|..+|| ++.+.|++..|+.+|-+.|+.+.|+.... .-|.|. | ..|+.++.|.+.+++.+..+.|.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 578999999998 67899999999999999999999986543 346553 2 3567778888877666555554444
No 231
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=67.14 E-value=0.19 Score=42.66 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=29.5
Q ss_pred CCCCCcccc-cccCccccccccccc-CCCCCchhHHHHH
Q 004252 105 GTSRSHGSH-VAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (765)
Q Consensus 105 ~tGrtitle-VspSdTIesVKv~Iq-kEGIPpdqQRLIF 141 (765)
.+|+.+ +. +.+++||..||..|+ +.|+|+++|||++
T Consensus 8 ~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~ 45 (86)
T 2kzr_A 8 KGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILV 45 (86)
T ss_dssp TTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE
T ss_pred CCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEe
Confidence 344433 55 889999999999999 9999999999964
No 232
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=65.79 E-value=2.1 Score=39.01 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=46.2
Q ss_pred CcEEEEEEeCC------CcEEEEEecC----CCCHHHHHHHHHHHhCCCCCCeEEEe-CC--e------ecCCcc---hh
Q 004252 17 TTIEIKIKTLD------SQTYTLRVDK----QVPVPALKEQIASVTGVLSEQQRLIC-RG--K------VLKDDQ---LL 74 (765)
Q Consensus 17 stMqI~VKtLd------GKTftLeVsp----sdTV~dLKeKIeektGIPPeqQRLIF-~G--K------vLkDdk---TL 74 (765)
+.|+|+||... |+...+++.. ..||.+|-+.|.+++ +..+-+|+. +| + +|-++. .|
T Consensus 3 ~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l 80 (110)
T 2k9x_A 3 NHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVV 80 (110)
T ss_dssp CSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHH
T ss_pred CccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeecc
Confidence 35888888764 3555666663 248999888888765 223334432 24 2 332332 23
Q ss_pred --cccCCCCCCEEEEeeecCC
Q 004252 75 --SAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 75 --SDYGIkdGSTIHLVlRlpg 93 (765)
.+|.+++||+|.++-...+
T Consensus 81 ~gldt~L~dgD~V~fistlhg 101 (110)
T 2k9x_A 81 GGMDYVLNDGDTVEFISTLHG 101 (110)
T ss_dssp TSSCCCCCSSCEEEEEECCCC
T ss_pred CCcccCCCCcCEEEEeCCCcc
Confidence 3588999999888765544
No 233
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=63.74 E-value=24 Score=30.84 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=43.9
Q ss_pred cEEEEEEeCC------C-cEEEEEecCCCCHHHHHHHHHHHhC-CCC---------CCe-------EEEeCCeecCCcch
Q 004252 18 TIEIKIKTLD------S-QTYTLRVDKQVPVPALKEQIASVTG-VLS---------EQQ-------RLICRGKVLKDDQL 73 (765)
Q Consensus 18 tMqI~VKtLd------G-KTftLeVspsdTV~dLKeKIeektG-IPP---------eqQ-------RLIF~GKvLkDdkT 73 (765)
+|+|+|+... | +.+.++ ..||.+|.+.+..++. +.. ... .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 4889998874 2 344444 6899999999987742 111 012 5666776553221
Q ss_pred hcccCCCCCCEEEEeee
Q 004252 74 LSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 74 LSDYGIkdGSTIHLVlR 90 (765)
-.++-+++|+.|.++-.
T Consensus 79 ~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 79 GLETLLKDSDEIGILPP 95 (99)
T ss_dssp STTSCCCTTEEEEEECC
T ss_pred CCCCCCCCCCEEEEECC
Confidence 23556899999988753
No 234
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=62.16 E-value=27 Score=36.10 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCC-eec-CCcchhcccCC
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRG-KVL-KDDQLLSAYHV 79 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~G-KvL-kDdkTLSDYGI 79 (765)
.-+...+.+.+..|+.++|+++++.++++++.|.|+|.+ +.. +.......|.-
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 345667889999999999999999999999999999998 443 33344555543
No 235
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=61.10 E-value=16 Score=29.44 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=41.2
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
+|+.+ ++....||.+|.+++ +++++...+..+|+.+..+ ...++-+++|+.|.++--
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEES
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEee
Confidence 56654 456678999999876 5666777777888887532 334567899999988754
No 236
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=60.70 E-value=17 Score=30.49 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=43.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
+|+.+.+ ...||.+|.++ .+++++..-+.++|+.+.. ....++-+++||.|-++--..+
T Consensus 6 NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgG 64 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQG 64 (73)
T ss_dssp TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCC
T ss_pred CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccC
Confidence 5775554 56899998764 5788888888899988743 3455678999999999865544
No 237
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=58.89 E-value=15 Score=30.00 Aligned_cols=56 Identities=4% Similarity=0.149 Sum_probs=40.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCCCCCCe--EEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 29 QTYTLRVDKQVPVPALKEQIASVTGVLSEQQ--RLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 29 KTftLeVspsdTV~dLKeKIeektGIPPeqQ--RLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
+...+++....||.+|++.+..+.. ..+.. .+..+|+.... +..+++|+.|.++..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEECC
Confidence 4556677777899999999977642 01233 67788888765 357899999988753
No 238
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=54.64 E-value=24 Score=31.89 Aligned_cols=38 Identities=26% Similarity=0.213 Sum_probs=32.0
Q ss_pred cEEEEEEeCC-------CcEEEEEecCCCCHHHHHHHHHHHhCCC
Q 004252 18 TIEIKIKTLD-------SQTYTLRVDKQVPVPALKEQIASVTGVL 55 (765)
Q Consensus 18 tMqI~VKtLd-------GKTftLeVspsdTV~dLKeKIeektGIP 55 (765)
.|+|+|...+ +..+.|.|.++.+..+|..+|.+|.+++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4888887653 5678999999999999999999998864
No 239
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=54.48 E-value=0.58 Score=41.13 Aligned_cols=41 Identities=2% Similarity=-0.129 Sum_probs=35.4
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHHHhh
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFavL~ 145 (765)
..|+.+.++|+++++++.|+.... ++|++++++||+|+--.
T Consensus 15 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~ 56 (94)
T 2io1_B 15 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 56 (94)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 356778899999999999999888 99999999999987443
No 240
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=52.52 E-value=26 Score=29.80 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=43.8
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCC-CCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeecCCC
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVL-SEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPVP 94 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIP-PeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRlpg~ 94 (765)
+|+.+.+......||.+|.++ .+++ ++..-+.++|+.+..+ ...++-+++||.|-++--..++
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 577554321156899998775 4677 7777788999988533 4556778999999998655543
No 241
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=51.79 E-value=14 Score=42.66 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=41.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCe-ecCCcchhccc
Q 004252 27 DSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGK-VLKDDQLLSAY 77 (765)
Q Consensus 27 dGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GK-vLkDdkTLSDY 77 (765)
..+.+.+.+.+++|+.+||+.|++.+||+++.|.|++... .+........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 4566778899999999999999999999999999998754 45555555554
No 242
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=51.13 E-value=26 Score=28.17 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=41.1
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 26 LDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 26 LdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
.+|+.+.+ ...||.+|.+++ +++++...+..+|+.+..+ ...++.+++|+.|.++.-.
T Consensus 4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V 61 (64)
T 2cu3_A 4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALM 61 (64)
T ss_dssp ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECC
T ss_pred ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeec
Confidence 46776654 568999999877 4566666777888877532 3345678999999988543
No 243
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=49.80 E-value=24 Score=28.27 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=39.8
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
|+|+|...+|+. +++....|+.+|-+.|....+ .+..-...+|+..+- ++-+++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl-----~~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPL-----SYVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCT-----TCBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCC-----CcCcCCCCEEEEEEC
Confidence 567777778886 566678999999888732211 111222357776544 366778888887753
No 244
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=48.87 E-value=25 Score=39.39 Aligned_cols=77 Identities=10% Similarity=0.218 Sum_probs=60.5
Q ss_pred CCCcEEEEEEeCCC--cEEE----EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC----C--eecC-Ccchhccc--CC
Q 004252 15 SETTIEIKIKTLDS--QTYT----LRVDKQVPVPALKEQIASVTGVLSEQQRLICR----G--KVLK-DDQLLSAY--HV 79 (765)
Q Consensus 15 s~stMqI~VKtLdG--KTft----LeVspsdTV~dLKeKIeektGIPPeqQRLIF~----G--KvLk-DdkTLSDY--GI 79 (765)
....+-||+|..|- +++. +-|+.+.+|.+|-..|.++.|+|++.--++|. + ..|+ .+.+|.++ .|
T Consensus 127 ~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL 206 (530)
T 2ylm_A 127 KDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDEL 206 (530)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTC
T ss_pred CCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcc
Confidence 34568999998863 4443 47889999999999999999999987766664 2 3567 57899999 99
Q ss_pred CCCCEEEEeeec
Q 004252 80 EDGHTLHMVVRQ 91 (765)
Q Consensus 80 kdGSTIHLVlRl 91 (765)
.+|++|.+=...
T Consensus 207 ~~GdII~fQ~~~ 218 (530)
T 2ylm_A 207 MDGDIIVFQKDD 218 (530)
T ss_dssp CTTEEEEEEECC
T ss_pred cCCCEEEEEecC
Confidence 999998776543
No 245
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=47.15 E-value=45 Score=31.16 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=52.7
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC------CeEEE---eCCe--ecCCcchhcccCCCCCCE
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE------QQRLI---CRGK--VLKDDQLLSAYHVEDGHT 84 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPe------qQRLI---F~GK--vLkDdkTLSDYGIkdGST 84 (765)
.+.+...|-..|...+++++....|+.+|+..+++|.+...+ .+.|+ +.|. +|++++.--.-.+.-...
T Consensus 7 ~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgR 86 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSH 86 (120)
T ss_dssp CCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEE
T ss_pred CCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccce
Confidence 346777787778888889999999999999999999987554 67776 5663 455443322222334567
Q ss_pred EEEeee
Q 004252 85 LHMVVR 90 (765)
Q Consensus 85 IHLVlR 90 (765)
|++..|
T Consensus 87 Lfvc~k 92 (120)
T 2dhz_A 87 LFACTR 92 (120)
T ss_dssp EEEECT
T ss_pred EEEeeh
Confidence 777665
No 246
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.54 E-value=0.77 Score=42.83 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=32.7
Q ss_pred CCCcccccccCccccccccccc-CCCCCchhHHHHHH
Q 004252 107 SRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSA 142 (765)
Q Consensus 107 GrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFa 142 (765)
+..++..++++.+|.+||..+. ..++|+++|||+|+
T Consensus 26 ~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 26 GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence 4567788999999999999988 89999999999998
No 247
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=43.64 E-value=1.1e+02 Score=27.93 Aligned_cols=75 Identities=11% Similarity=0.170 Sum_probs=44.8
Q ss_pred CCCCCCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCC--CeEEE--eCCeecCCcchhcccCCCCCCEEEE
Q 004252 12 AESSETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSE--QQRLI--CRGKVLKDDQLLSAYHVEDGHTLHM 87 (765)
Q Consensus 12 ae~s~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPe--qQRLI--F~GKvLkDdkTLSDYGIkdGSTIHL 87 (765)
+......=-++|+....+. ..-|- -.++.+|+.|..++++++.. .-+|+ ..|..++|+.-+... +..|+.+
T Consensus 12 ~~~~~~~kPfkV~~~~~r~-k~GV~-A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lm 86 (100)
T 1f2r_I 12 PDDVRPLKPCLLRRNHSRD-QHGVA-ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFV 86 (100)
T ss_dssp CTTSCCCEEEEEEETTEEE-EEEEE-ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEE
T ss_pred cccCCCCCCEEEeeCCCcc-EEeEE-cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEE
Confidence 3333344445666433333 44342 35799999999999999753 34554 468888776544332 3556666
Q ss_pred eeec
Q 004252 88 VVRQ 91 (765)
Q Consensus 88 VlRl 91 (765)
++..
T Consensus 87 vL~~ 90 (100)
T 1f2r_I 87 ALAC 90 (100)
T ss_dssp EECS
T ss_pred EEcC
Confidence 6653
No 248
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=43.35 E-value=13 Score=41.61 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=29.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEE
Q 004252 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLI 62 (765)
Q Consensus 31 ftLeVspsdTV~dLKeKIeektGIPPeqQRLI 62 (765)
..++|.+++|+.+||++|+++.|+++++|||-
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 36789999999999999999999999999974
No 249
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=42.11 E-value=18 Score=32.53 Aligned_cols=59 Identities=8% Similarity=0.202 Sum_probs=41.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCC-----------CeEEEeCC-eecC------CcchhcccCCCCCCEEEEe
Q 004252 30 TYTLRVDKQVPVPALKEQIASVTGVLSE-----------QQRLICRG-KVLK------DDQLLSAYHVEDGHTLHMV 88 (765)
Q Consensus 30 TftLeVspsdTV~dLKeKIeektGIPPe-----------qQRLIF~G-KvLk------DdkTLSDYGIkdGSTIHLV 88 (765)
...++|+++.|+.+|-+.+.+.-.+--+ ...|++.. ..|+ -+++|.+.|+.+|+.|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999984332111 23344444 2343 2567999999999999884
No 250
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=38.77 E-value=84 Score=26.08 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=37.8
Q ss_pred EEecCCCCHHHHHHHHHHHhC------C-----CCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 33 LRVDKQVPVPALKEQIASVTG------V-----LSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 33 LeVspsdTV~dLKeKIeektG------I-----PPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
++++...||.+|.+.+..+.. + ......+..+|+..... .-.++-+++|+.|.++-.
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCC
Confidence 455556899999999987642 1 01345677788766422 123556899999998753
No 251
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=36.90 E-value=1.2 Score=36.90 Aligned_cols=40 Identities=3% Similarity=-0.119 Sum_probs=33.8
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHHHh
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFavL 144 (765)
..|+.+.++|+++++++.++.... +.|+++.++||+|+.-
T Consensus 9 ~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~ 49 (72)
T 1wm3_A 9 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ 49 (72)
T ss_dssp TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCE
Confidence 356678899999999999998777 8999999999988643
No 252
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=36.77 E-value=61 Score=35.92 Aligned_cols=58 Identities=5% Similarity=0.107 Sum_probs=45.2
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCC----eecCCcchh
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRG----KVLKDDQLL 74 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPP--eqQRLIF~G----KvLkDdkTL 74 (765)
..+.+.|..+||....+.|+...|+.+|-+.|+++.|+.. +..-|.+.. +.|++++.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i 278 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVV 278 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBH
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCch
Confidence 4688999999999999999999999999999999999974 334455432 235555443
No 253
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=34.07 E-value=16 Score=33.81 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=51.9
Q ss_pred EEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC--CCeEEEeCC---eecCCcchhcccCCCCCCEEEEeee
Q 004252 19 IEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS--EQQRLICRG---KVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 19 MqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPP--eqQRLIF~G---KvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
++|+|..++ +..+++|..+.-|..|.-||-++..++. .+--|-.-- ..|+-..+|..|||+.+..+++...
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 556665544 8889999999999999999998876554 233333322 2568889999999999998887643
No 254
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=33.21 E-value=20 Score=29.89 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=35.8
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEee
Q 004252 33 LRVDKQVPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVV 89 (765)
Q Consensus 33 LeVspsdTV~dLKeKIeektGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVl 89 (765)
+++....||.+|.+++ +++.+...+..+|+.+..+ +-|++||.|-++.
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 4556678999998765 4666666788899988654 6688899887764
No 255
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=32.98 E-value=1e+02 Score=27.30 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=30.7
Q ss_pred cEEEEEEeCCCcEE-EEEec-CCCCHHHHHHHHHHHhCCCCCCeEE
Q 004252 18 TIEIKIKTLDSQTY-TLRVD-KQVPVPALKEQIASVTGVLSEQQRL 61 (765)
Q Consensus 18 tMqI~VKtLdGKTf-tLeVs-psdTV~dLKeKIeektGIPPeqQRL 61 (765)
+..|+-|....+.+ ++.++ ...+|.+||++|..+.++...+--|
T Consensus 6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 44566666655544 47887 5679999999999888775444433
No 256
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=31.10 E-value=2.1 Score=37.54 Aligned_cols=41 Identities=2% Similarity=-0.129 Sum_probs=34.8
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHHHhh
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFavL~ 145 (765)
..|+.+.++|+++++++.|+.... +.|+++.++||+|+.-.
T Consensus 13 ~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~ 54 (91)
T 2io0_B 13 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 54 (91)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 346678899999999999998877 99999999999987443
No 257
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=30.91 E-value=97 Score=29.29 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeec-----C--CcchhcccCCCCCCEEEEeee
Q 004252 37 KQVPVPALKEQIASVTGVLSEQQRLIC--RGKVL-----K--DDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 37 psdTV~dLKeKIeektGIPPeqQRLIF--~GKvL-----k--DdkTLSDYGIkdGSTIHLVlR 90 (765)
...|+.+|-+.|..++|+.. ..-++- ..|.| + -+++|.+.||++|+.|.+.=-
T Consensus 18 ~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 18 NKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred cccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 35799999888999999863 444442 23444 2 248999999999999888743
No 258
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=29.95 E-value=1.3 Score=37.50 Aligned_cols=40 Identities=5% Similarity=-0.028 Sum_probs=33.5
Q ss_pred CCCC-CcccccccCccccccccccc-CCCCCchhHHHHHHHh
Q 004252 105 GTSR-SHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (765)
Q Consensus 105 ~tGr-titleVspSdTIesVKv~Iq-kEGIPpdqQRLIFavL 144 (765)
..|+ .+.++|++++.++.|+.... +.|++++++||+|+.-
T Consensus 15 ~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~ 56 (79)
T 3a4r_A 15 KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGT 56 (79)
T ss_dssp SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTE
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 4564 67899999999999998877 8999999999988643
No 259
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.77 E-value=1.1e+02 Score=27.30 Aligned_cols=66 Identities=12% Similarity=0.240 Sum_probs=44.5
Q ss_pred EEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEe--CCeecCCcchhcccCCCCCCEEEEeeec
Q 004252 20 EIKIKTLD-SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLIC--RGKVLKDDQLLSAYHVEDGHTLHMVVRQ 91 (765)
Q Consensus 20 qI~VKtLd-GKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF--~GKvLkDdkTLSDYGIkdGSTIHLVlRl 91 (765)
-++|+..+ .+.+-|.. .++.+|+.|..+++.++...-+|+. .|..++|+.-+..+ +..|+.|++..
T Consensus 11 pfkV~~~~Rs~k~GV~A---~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 11 PFRVSNHDRSSRRGVMA---SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp EEEEECTTSCCCEEEEE---SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CEEEecCCCCeEEeEEc---CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 35555544 23344443 4799999999999999766677665 58888887665443 36677777664
No 260
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=29.54 E-value=5.9 Score=34.19 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=30.8
Q ss_pred CCCCcccccccCccccccccccc-CCCCCchhHHHHH
Q 004252 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVS 141 (765)
Q Consensus 106 tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIF 141 (765)
.+..+...+.++.||..||.+++ .-|+|+..|+|.+
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~ 57 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSY 57 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEE
Confidence 34556678889999999999999 9999999999864
No 261
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=28.49 E-value=1.8e+02 Score=30.26 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=52.5
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-------CeecCCcchhcc----cCCCCCCEE
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-------GKVLKDDQLLSA----YHVEDGHTL 85 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~-------GKvLkDdkTLSD----YGIkdGSTI 85 (765)
..+-|+|-..||....|.|++++|+.+|-+.+..+.++....-..+|. -|.|+|...+.+ +.......|
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l 109 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKL 109 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceE
Confidence 445677777789999999999999999999999988876555444442 267777766544 445555666
Q ss_pred EEee
Q 004252 86 HMVV 89 (765)
Q Consensus 86 HLVl 89 (765)
.+..
T Consensus 110 ~f~~ 113 (281)
T 4gmv_A 110 IFME 113 (281)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5543
No 262
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=28.37 E-value=1.2e+02 Score=26.91 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=49.2
Q ss_pred CcEEEEEEeCC---CcEEEEEecCCCCHHHHHHHHHH--H-hCCCCCCeEEEeCCeecCCcchhcccCCCCCCEEEEeee
Q 004252 17 TTIEIKIKTLD---SQTYTLRVDKQVPVPALKEQIAS--V-TGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 17 stMqI~VKtLd---GKTftLeVspsdTV~dLKeKIee--k-tGIPPeqQRLIF~GKvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
++|+|.|-..- .+.+.+++....||.++-+...- + ..|......+..+|+..+ .++-+++||.|-++--
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRP 85 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEec
Confidence 46777765442 24556788899999998887643 2 234455677888888877 4566889999998765
Q ss_pred cC
Q 004252 91 QP 92 (765)
Q Consensus 91 lp 92 (765)
..
T Consensus 86 l~ 87 (97)
T 2hj1_A 86 LL 87 (97)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 263
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=27.20 E-value=95 Score=28.46 Aligned_cols=74 Identities=9% Similarity=0.085 Sum_probs=50.2
Q ss_pred CCcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhC-C-------CCCCeEEEe---CCe--ecCCc-chhcccCCCC
Q 004252 16 ETTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTG-V-------LSEQQRLIC---RGK--VLKDD-QLLSAYHVED 81 (765)
Q Consensus 16 ~stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektG-I-------PPeqQRLIF---~GK--vLkDd-kTLSDYGIkd 81 (765)
...+.|.+-..+|-.+.++++.+.|+.++|+.+.++.. . .++...+.+ .|. .|.|+ +.|.|+...
T Consensus 17 ~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf- 95 (108)
T 2v1y_A 17 PPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF- 95 (108)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-
T ss_pred CCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-
Confidence 45677888788999999999999999999999977633 1 222223332 122 36444 788887765
Q ss_pred CCEEEEeee
Q 004252 82 GHTLHMVVR 90 (765)
Q Consensus 82 GSTIHLVlR 90 (765)
-..|.|+-|
T Consensus 96 ~piLklver 104 (108)
T 2v1y_A 96 QPFLKVIEP 104 (108)
T ss_dssp SSEEEEECC
T ss_pred ceEEEEEee
Confidence 456666554
No 264
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=25.25 E-value=3.1 Score=36.26 Aligned_cols=40 Identities=3% Similarity=-0.124 Sum_probs=34.0
Q ss_pred CCCCcccccccCccccccccccc-CCCCCchhHHHHHHHhh
Q 004252 106 TSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (765)
Q Consensus 106 tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFavL~ 145 (765)
.|+.+.+.|++++++..|+.... +.|++++++||+|+.-.
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 66 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 66 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEE
Confidence 45667899999999999998877 99999999999987544
No 265
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=22.83 E-value=3.1 Score=37.86 Aligned_cols=40 Identities=3% Similarity=-0.051 Sum_probs=33.9
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHHHh
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVL 144 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFavL 144 (765)
..|+.+.++|++++++..|+.... +.|++++++||+|+--
T Consensus 34 ~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~ 74 (110)
T 2k8h_A 34 ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGT 74 (110)
T ss_dssp TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSC
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE
Confidence 346678899999999999998877 8999999999998643
No 266
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=22.32 E-value=2.9e+02 Score=24.46 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=47.5
Q ss_pred EEEEecCCCCHHHHHHHHHHH-hC--CCC---CCeEEEeCC--eecCCcchhcccCCCCCCEEEEeee
Q 004252 31 YTLRVDKQVPVPALKEQIASV-TG--VLS---EQQRLICRG--KVLKDDQLLSAYHVEDGHTLHMVVR 90 (765)
Q Consensus 31 ftLeVspsdTV~dLKeKIeek-tG--IPP---eqQRLIF~G--KvLkDdkTLSDYGIkdGSTIHLVlR 90 (765)
.-+.|+..+|+.++-+|++.. .| +.+ .-.|..++| +.|..+.++++-||+.-+.|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 446899999999999999764 22 322 236778899 8999999999999999888877653
No 267
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=21.68 E-value=1.1e+02 Score=35.28 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=36.8
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLS 56 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPP 56 (765)
..|.++|..+||....++|+...|+.+|-+.|+.+.|+..
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e 301 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD 301 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc
Confidence 4689999999999999999999999999999999998653
No 268
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.44 E-value=3.5 Score=37.04 Aligned_cols=41 Identities=2% Similarity=-0.129 Sum_probs=34.4
Q ss_pred CCCCCcccccccCccccccccccc-CCCCCchhHHHHHHHhh
Q 004252 105 GTSRSHGSHVAPSVVIETFNLPDR-GDGVPSEISQIVSAVLG 145 (765)
Q Consensus 105 ~tGrtitleVspSdTIesVKv~Iq-kEGIPpdqQRLIFavL~ 145 (765)
..|+.+.+.|++++++..|+.... +.|+++.++||+|+--.
T Consensus 32 ~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~ 73 (104)
T 1wz0_A 32 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 73 (104)
T ss_dssp SSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSB
T ss_pred CCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEE
Confidence 345678899999999999998877 99999999999987443
No 269
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=20.49 E-value=1.9e+02 Score=28.44 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=36.3
Q ss_pred CcEEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE
Q 004252 17 TTIEIKIKTLDSQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR 60 (765)
Q Consensus 17 stMqI~VKtLdGKTftLeVspsdTV~dLKeKIeektGIPPeqQR 60 (765)
..+.|+|-..||....+.|++.+|+.+|-+.+.++.++..+...
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~ 76 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDW 76 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTE
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCe
Confidence 34566777778999999999999999999999999998765443
No 270
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=20.11 E-value=2.3e+02 Score=25.26 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=52.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCeEEEeC-CeecCCcchhcccCCCCCCEEEEeeecCC
Q 004252 31 YTLRVDKQVPVPALKEQIASVTGVLSEQQRLICR-GKVLKDDQLLSAYHVEDGHTLHMVVRQPV 93 (765)
Q Consensus 31 ftLeVspsdTV~dLKeKIeektGIPPeqQRLIF~-GKvLkDdkTLSDYGIkdGSTIHLVlRlpg 93 (765)
..+.|........+-+..++++.+|+..--+|.+ |--+...++-...-+|.|+.|.|+.|-+.
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRV 89 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRV 89 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSS
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccc
Confidence 3468888888998888999999999988877765 66678888888888899999999988654
No 271
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=20.05 E-value=1.8e+02 Score=25.85 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=34.7
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCCCCCCeE-EEeCCee
Q 004252 28 SQTYTLRVDKQVPVPALKEQIASVTGVLSEQQR-LICRGKV 67 (765)
Q Consensus 28 GKTftLeVspsdTV~dLKeKIeektGIPPeqQR-LIF~GKv 67 (765)
...+.+.|++..+=.++|+.|+..+++.+..-+ ++..||.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 368999999999999999999999999998875 6677764
Done!